Query 036677
Match_columns 78
No_of_seqs 114 out of 409
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w63_Q Adapter-related protein 99.8 2.8E-19 9.5E-24 122.2 5.2 64 2-78 32-95 (158)
2 2vgl_S AP-2 complex subunit si 99.8 6.3E-19 2.1E-23 117.9 6.0 64 2-78 32-95 (142)
3 3tjz_C Coatomer subunit zeta-1 99.7 1.5E-18 5.1E-23 119.0 4.2 61 2-78 45-105 (153)
4 1w63_M Adaptor-related protein 99.5 3.8E-14 1.3E-18 108.0 4.6 64 2-78 30-95 (423)
5 2vgl_M AP-2 complex subunit MU 99.4 7E-14 2.4E-18 106.8 5.1 61 5-78 32-93 (435)
6 1yb3_A Hypothetical protein; s 54.4 5.6 0.00019 28.0 1.7 31 45-78 80-110 (175)
7 2r17_C Vacuolar protein sortin 24.8 17 0.0006 26.9 0.3 15 63-77 231-245 (298)
8 3doe_B ADP-ribosylation factor 24.7 27 0.00093 24.1 1.2 23 55-77 56-78 (165)
9 3lyv_A Ribosome-associated fac 17.8 49 0.0017 19.4 1.2 9 31-39 39-47 (66)
10 3cue_C Transport protein parti 16.7 1.3E+02 0.0043 19.8 3.2 28 45-72 83-113 (159)
No 1
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.77 E-value=2.8e-19 Score=122.15 Aligned_cols=64 Identities=50% Similarity=1.048 Sum_probs=61.2
Q ss_pred HHHHHHHHHhCCCCceeeeecCCCCCCccccceEEeecccceeeeceEEEEEeCCCCChhHHHHHHHHHHhhhccCC
Q 036677 2 IRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEILDIIHHYVEILDLYF 78 (78)
Q Consensus 2 ~~ei~~~il~R~~~~cnf~e~~~~k~~~~~~~~iVYRr~~~~~YAsLyFi~~vD~~eNEL~~LelIh~fVE~LD~yF 78 (78)
++++++++.+|++++|+|+++++.+ +|||| ||+|||++++|.++|||.++|+||.|||+||+||
T Consensus 32 ~~~~~~~i~~~~~~~~~~i~~~~~~--------~vy~~-----~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf 95 (158)
T 1w63_Q 32 VRELMQVVLARKPKMCSFLEWRDLK--------VVYKR-----YASLYFCCAIEGQDNELITLELIHRYVELLDKYF 95 (158)
T ss_dssp HHHHHHHHHTSCSSSCSEEEETTEE--------EEEEE-----ETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCeEEECCEE--------EEEEE-----ECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999998 99999 9999999999999999999999999999999987
No 2
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.76 E-value=6.3e-19 Score=117.86 Aligned_cols=64 Identities=47% Similarity=0.916 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCCCceeeeecCCCCCCccccceEEeecccceeeeceEEEEEeCCCCChhHHHHHHHHHHhhhccCC
Q 036677 2 IRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEILDIIHHYVEILDLYF 78 (78)
Q Consensus 2 ~~ei~~~il~R~~~~cnf~e~~~~k~~~~~~~~iVYRr~~~~~YAsLyFi~~vD~~eNEL~~LelIh~fVE~LD~yF 78 (78)
++++.+++.+|++++|+|+++++.+ +|||| ||+|||+++++.++|||+++|+||.|||+||+||
T Consensus 32 ~~~f~~~v~~~~~~~~~~~~~~~~~--------~vy~~-----~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf 95 (142)
T 2vgl_S 32 IEEVHAVVTVRDAKHTNFVEFRNFK--------IIYRR-----YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF 95 (142)
T ss_dssp HHHHHHHHHTCCTTSCSEEEETTEE--------EEEEE-----ETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCCEEEECCEE--------EEEEE-----ECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5778899999988999999999998 99999 9999999999999999999999999999999997
No 3
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.73 E-value=1.5e-18 Score=119.02 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCCCceeeeecCCCCCCccccceEEeecccceeeeceEEEEEeCCCCChhHHHHHHHHHHhhhccCC
Q 036677 2 IRELSGIILTRSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEILDIIHHYVEILDLYF 78 (78)
Q Consensus 2 ~~ei~~~il~R~~~~cnf~e~~~~k~~~~~~~~iVYRr~~~~~YAsLyFi~~vD~~eNEL~~LelIh~fVE~LD~yF 78 (78)
++++++++ +|++ |+++++++.+ +|||| ||+|||++++|.+||||+++|+||.|||+||+||
T Consensus 45 e~~i~~~~-~r~~--~~i~~~~~~~--------~vy~~-----~~~Lyfv~~~~~~eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 45 EKNIFNKT-HRTD--SEIALLEGLT--------VVYKS-----SIDLYFYVIGSSYENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHH-SSCC--CCEEEETTEE--------EEEEE-----CSSCEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCC--CCEEEECCEE--------EEEEE-----ECCEEEEEEEcCCCChHHHHHHHHHHHHHHHHHh
Confidence 56899997 6754 8999999999 99999 9999999999999999999999999999999987
No 4
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=3.8e-14 Score=108.02 Aligned_cols=64 Identities=13% Similarity=0.274 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCC--CCceeeeecCCCCCCccccceEEeecccceeeeceEEEEEeCCCCChhHHHHHHHHHHhhhccCC
Q 036677 2 IRELSGIILTRS--PKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEILDIIHHYVEILDLYF 78 (78)
Q Consensus 2 ~~ei~~~il~R~--~~~cnf~e~~~~k~~~~~~~~iVYRr~~~~~YAsLyFi~~vD~~eNEL~~LelIh~fVE~LD~yF 78 (78)
.+...+++.+|. .++|+|+++++.+ +||++ ||+|||+++++.++|||.+||+||.|||+||.||
T Consensus 30 ~~~f~~~v~~~~~~~~~~~~i~~~~~~--------~vy~~-----~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf 95 (423)
T 1w63_M 30 VEHFMPILMEKEEEGMLSPILAHGGVR--------FMWIK-----HNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYF 95 (423)
T ss_dssp HHHHHHHHHHHHHTSCCCSEEEETTEE--------EEEEE-----ETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhccccCCCCCEEEECCEE--------EEEEE-----ECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345567777763 5799999999988 99999 9999999999999999999999999999999997
No 5
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.44 E-value=7e-14 Score=106.84 Aligned_cols=61 Identities=8% Similarity=0.177 Sum_probs=54.9
Q ss_pred HHHHHHh-CCCCceeeeecCCCCCCccccceEEeecccceeeeceEEEEEeCCCCChhHHHHHHHHHHhhhccCC
Q 036677 5 LSGIILT-RSPKLCNFVEWNGGLPTSIIFNTKCYPRENVIIYSGLYFCMCVDPDDNELEILDIIHHYVEILDLYF 78 (78)
Q Consensus 5 i~~~il~-R~~~~cnf~e~~~~k~~~~~~~~iVYRr~~~~~YAsLyFi~~vD~~eNEL~~LelIh~fVE~LD~yF 78 (78)
..+.+.+ |++++|+|+++++.+ +||++ ||+|||+++++.++|||.+||+||.|||+||.||
T Consensus 32 f~~~v~~~~~~~~~~ii~~~~~~--------~vy~~-----~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf 93 (435)
T 2vgl_M 32 FRVNVIHARQQVRSPVTNIARTS--------FFHVK-----RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYF 93 (435)
T ss_dssp HHHHTTTCSSCCCCSEEEETTEE--------EEEEE-----ETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCEEEECCEE--------EEEEE-----ECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455554 555899999999998 99999 9999999999999999999999999999999987
No 6
>1yb3_A Hypothetical protein; structural genomics, protein structure initiative, PSI; 1.60A {Pyrococcus furiosus} SCOP: d.296.1.2
Probab=54.43 E-value=5.6 Score=28.00 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=26.0
Q ss_pred eeceEEEEEeCCCCChhHHHHHHHHHHhhhccCC
Q 036677 45 YSGLYFCMCVDPDDNELEILDIIHHYVEILDLYF 78 (78)
Q Consensus 45 YAsLyFi~~vD~~eNEL~~LelIh~fVE~LD~yF 78 (78)
.-+.||++++.. ++|. .+++-.|+|.++|+|
T Consensus 80 ~~~~yfv~~v~K--e~ls-~~Fi~~fl~~f~k~~ 110 (175)
T 1yb3_A 80 PQGFYFVFAFPK--EELS-KEFIEDVIRAFEKLF 110 (175)
T ss_dssp TTEEEEEEEEEG--GGCC-HHHHHHHHHHCSEEE
T ss_pred cceEEEEEEecH--HHHh-HHHHHHHHHhcchhh
Confidence 568999999998 4455 899999999998865
No 7
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=24.80 E-value=17 Score=26.89 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhccC
Q 036677 63 ILDIIHHYVEILDLY 77 (78)
Q Consensus 63 ~LelIh~fVE~LD~y 77 (78)
...-++.|||+||+|
T Consensus 231 ~~~~v~LfveILn~y 245 (298)
T 2r17_C 231 PSLQVQLFIEILNRY 245 (298)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 346799999999987
No 8
>3doe_B ADP-ribosylation factor-like protein 2-binding protein; binder of ARL2, small GTPase, effector, complex structure, GTP-binding, lipoprotein; HET: GTP; 2.25A {Homo sapiens} PDB: 3dof_B* 2k9a_A 2k0s_A
Probab=24.66 E-value=27 Score=24.06 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=19.9
Q ss_pred CCCCChhHHHHHHHHHHhhhccC
Q 036677 55 DPDDNELEILDIIHHYVEILDLY 77 (78)
Q Consensus 55 D~~eNEL~~LelIh~fVE~LD~y 77 (78)
|.+||.|..-++-+-|.+..+++
T Consensus 56 d~EENKLeYT~I~~eY~~LVE~~ 78 (165)
T 3doe_B 56 DTEENKLIYTPIFNEYISLVEKY 78 (165)
T ss_dssp SSSSBCTTHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHH
Confidence 67899999999999999887764
No 9
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=17.76 E-value=49 Score=19.45 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=7.0
Q ss_pred ccceEEeec
Q 036677 31 IFNTKCYPR 39 (78)
Q Consensus 31 ~~~~iVYRr 39 (78)
+..++||||
T Consensus 39 g~~nVVYRR 47 (66)
T 3lyv_A 39 GATNILYRR 47 (66)
T ss_dssp CSEEEEEEC
T ss_pred CCEEEEEEE
Confidence 445699999
No 10
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=16.72 E-value=1.3e+02 Score=19.83 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=22.7
Q ss_pred eeceEEEEEeCCCCChh-HHHHHHH--HHHh
Q 036677 45 YSGLYFCMCVDPDDNEL-EILDIIH--HYVE 72 (78)
Q Consensus 45 YAsLyFi~~vD~~eNEL-~~LelIh--~fVE 72 (78)
=.++=|++..|..++++ .+|--|| .||+
T Consensus 83 ~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 83 ASGLWFVLLSDFKQQSYTQVLQYIYSHIYVK 113 (159)
T ss_dssp SSCCEEEEECCSSSSCTHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCcchHHHHHHHHHHHHHHH
Confidence 45788999999998888 6677776 7887
Done!