BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036678
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/470 (31%), Positives = 237/470 (50%), Gaps = 52/470 (11%)
Query: 12 EVTKITPFPNSTTSFHLPLTYFDTFWILTPPVERLFFYEVAHLTSEIFNLTILPKLKHSL 71
E ++++P P++ L LT+FD FW+ +PP+ LFFYE+ +T F T++P +KHSL
Sbjct: 11 EQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSL 69
Query: 72 SLTLFHYLPLAGHLT-WPSDAEKPAIYYSPNDGVSVTVAVSNADFNILASDGIREAAEFR 130
S+TL H+ P G L +P+ +KP I Y D V+VT A N D N L + R +F
Sbjct: 70 SITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCDKFY 129
Query: 131 PLTPQLVISEDKAEAV-----AIQITLFPNEGFSIGISFHHVVADGKSSTTFMKAWAYLC 185
L P L S ++ + ++Q+TLFPN+G +IGI+ HH + D + F+KAW +
Sbjct: 130 DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIA 189
Query: 186 KLKATEKNPYLLSPDLTPSFDRTVIKDTKGLDMVYLKSMLAAIGSDSSRSLKHDF-SAGL 244
+ +++ L+ P +DR + LD YLK S D+ + L
Sbjct: 190 RSGNNDES--FLANGTRPLYDRII--KYPMLDEAYLKRA-------KVESFNEDYVTQSL 238
Query: 245 VNQNNLVRATFKLTREDINKLRYKVLSINGNQYEVGQSKQL-HLSTFVLSLSYAYVCMVK 303
++ +RATF LTR IN+L+ +VL+ Q L ++S+F ++ +Y + C+ K
Sbjct: 239 AGPSDKLRATFILTRAVINQLKDRVLA---------QLPTLEYVSSFTVACAYIWSCIAK 289
Query: 304 ANGEEAS-------TNDRLDPPVPVNYFGNCVESLAMAAKASDFMTENGIAFVA------ 350
+ ++ R+ PP+P YFGNCV A AK + + + G A
Sbjct: 290 SRNDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGEN 349
Query: 351 --EKLSDLSKGLEGDDIKGSKRKIVKLIRMYTQQPALVLSVAGSTHFGLYESDFGWFRPK 408
+ L+D G+ DD++ + + P + V+G+ Y+ DFGW +PK
Sbjct: 350 LHKTLTDYKDGVLKDDMESFNDLVSE------GMPTTMTWVSGTPKLRFYDMDFGWGKPK 403
Query: 409 KVEIVSVDKTGTIAMSDCRDRDXXXXXXXXXXLDKLKMELFASLFVDGLK 458
K+E VS+D G I+++ C++ + + +ME F +F DGLK
Sbjct: 404 KLETVSIDHNGAISINSCKESN--EDLEIGVCISATQMEDFVHIFDDGLK 451
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 229/471 (48%), Gaps = 51/471 (10%)
Query: 12 EVTKITPFPNSTTSFHLPLTYFDTFWILTPPVERLFFYEVAHLTSEIFNLTILPKLKHSL 71
E ++ P P S T LPLTYFD W+ R+ FY++ ++ F TI+P LK SL
Sbjct: 6 EQCQVVPSPGSATELTLPLTYFDHVWLAFHRXRRILFYKLP-ISRPDFVQTIIPTLKDSL 64
Query: 72 SLTLFHYLPLAGHLTWPSD-AEKPAIYYSPNDGVSVTVAVSNADFNILASDGIREAAEFR 130
SLTL +YLPLAG++ P D + P + Y + VSV + S+ DFN L R +F
Sbjct: 65 SLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRNTKDFY 124
Query: 131 PLTPQLVISEDK-----AEAVAIQITLFPNEGFSIGISFHHVVADGKSSTTFMKAWAYLC 185
PQL +D A +AIQ+TLFPN G SIG + HHV DG + F++AWA L
Sbjct: 125 HFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLN 184
Query: 186 KLKATEKNPYLLSPDLTPSFDRTVIKDTKGLDMVYLKSMLAAIGSDSSRSLKHDFSAGLV 245
K E+ L+ + P +DR+VIKD G+ +I ++ + + +V
Sbjct: 185 KFGGDEQ---FLANEFIPFYDRSVIKDPNGVGX--------SIWNEXKKYKHXXKXSDVV 233
Query: 246 NQNNLVRATFKLTREDINKLRYKVLSINGNQYEVGQSKQLHLSTFVLSLSYAYVCMVK-- 303
+ VR TF +TR DI KL+ VL+ + K H+++F ++ +Y + C++K
Sbjct: 234 TPPDKVRGTFIITRHDIGKLKNLVLT--------RRPKLTHVTSFTVTCAYVWTCIIKSE 285
Query: 304 -ANGEEASTND------------RLDPPVPVNYFGNCVESLAMAAKASDFMTENGIAFVA 350
A GEE N + +PP+P +YFGN + + D + G
Sbjct: 286 AATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAV 345
Query: 351 EKLSDLSKGLEGDD---IKGSKRKIVKLIRMYTQQPA-LVLSVAGSTHFGLYESDFGWFR 406
E + + + D+ + GS + Y + A LSVAGS LY +DFGW R
Sbjct: 346 ELIGEAIRKRXKDEEWILSGS------WFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGR 399
Query: 407 PKKVEIVSVDKTGTIAMSDCRDRDXXXXXXXXXXLDKLKMELFASLFVDGL 457
P+K+E VS+D I+ S + +D L K + FA+ F G+
Sbjct: 400 PEKLEFVSIDNDDGISXSLSKSKDSDGDLEIGLSLSKTRXNAFAAXFTHGI 450
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 147/470 (31%), Positives = 235/470 (50%), Gaps = 52/470 (11%)
Query: 12 EVTKITPFPNSTTSFHLPLTYFDTFWILTPPVERLFFYEVAHLTSEIFNLTILPKLKHSL 71
E ++++P P++ L LT+FD FW+ +PP+ LFFYE+ +T F T++P +KHSL
Sbjct: 11 EQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSL 69
Query: 72 SLTLFHYLPLAGHLT-WPSDAEKPAIYYSPNDGVSVTVAVSNADFNILASDGIREAAEFR 130
S+TL H+ P G L +P+ +KP I Y D V+VT A N D N L + R +F
Sbjct: 70 SITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCDKFY 129
Query: 131 PLTPQLVISEDKAEAV-----AIQITLFPNEGFSIGISFHHVVADGKSSTTFMKAWAYLC 185
L P L S ++ + ++Q+TLFPN+G +IGI+ HH + D + F+KAW +
Sbjct: 130 DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIA 189
Query: 186 KLKATEKNPYLLSPDLTPSFDRTVIKDTKGLDMVYLKSMLAAIGSDSSRSLKHDF-SAGL 244
+ +++ L+ P +DR +IK LD YLK S D+ + L
Sbjct: 190 RSGNNDES--FLANGTRPLYDR-IIK-YPXLDEAYLKRA-------KVESFNEDYVTQSL 238
Query: 245 VNQNNLVRATFKLTREDINKLRYKVLSINGNQYEVGQSKQL-HLSTFVLSLSYAYVCMVK 303
++ +RATF LTR IN+L+ +VL+ Q L ++S+F ++ +Y + C+ K
Sbjct: 239 AGPSDKLRATFILTRAVINQLKDRVLA---------QLPTLEYVSSFTVACAYIWSCIAK 289
Query: 304 ANGEEAS-------TNDRLDPPVPVNYFGNCVESLAMAAKASDFMTENGIAFVA------ 350
+ ++ R PP+P YFGNCV A AK + + + G A
Sbjct: 290 SRNDKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGEN 349
Query: 351 --EKLSDLSKGLEGDDIKGSKRKIVKLIRMYTQQPALVLSVAGSTHFGLYESDFGWFRPK 408
+ L+D G+ DD + + + P V+G+ Y+ DFGW +PK
Sbjct: 350 LHKTLTDYKDGVLKDDXESFNDLVSE------GXPTTXTWVSGTPKLRFYDXDFGWGKPK 403
Query: 409 KVEIVSVDKTGTIAMSDCRDRDXXXXXXXXXXLDKLKMELFASLFVDGLK 458
K+E VS+D G I+++ C++ + + + E F +F DGLK
Sbjct: 404 KLETVSIDHNGAISINSCKESN--EDLEIGVCISATQXEDFVHIFDDGLK 451
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 154/386 (39%), Gaps = 61/386 (15%)
Query: 46 LFFYEVAHLTSEIFNLTILPKLKHSLSLTLFHYLPLAGHLTWPSDAEKPAIYYSPN-DGV 104
++FY +S F+ +L K +LS L + P+AG L D I N +GV
Sbjct: 41 VYFYRPTG-SSNFFDAKVL---KDALSRALVPFYPMAGRLKRDEDGR---IEIECNGEGV 93
Query: 105 SVTVAVSNA---DFNILASDGIREAAEFRPLTPQLVISEDKAE--AVAIQITLFPNEGFS 159
A S+ DF A E R L P + S+ + + +Q+T F G S
Sbjct: 94 LFVEAESDGVVDDFGDFAP-----TLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVS 148
Query: 160 IGISFHHVVADGKSSTTFMKAWAYLCKLKATEKNPYLLSPDLTPSFDRTVI--KDTKGLD 217
+G+ H ADG S F+ +W+ + + L L P DRT++ +D
Sbjct: 149 LGVGMRHHAADGFSGLHFINSWSDMAR---------GLDVTLPPFIDRTLLRARDPPQPQ 199
Query: 218 MVYLKSMLAAIGSDSSRSLKHDFSAGLVNQNNLVRATFKLTREDINKLRYKVLSINGNQY 277
+++ S ++ K D + + FKLTRE I+ L+ K +GN
Sbjct: 200 FQHIEYQPPPALKVSPQTAKSD------SVPETAVSIFKLTREQISALKAKSKE-DGN-- 250
Query: 278 EVGQSKQLHLSTFVLSLSYAYVCMVKANGEEASTND----------RLDPPVPVNYFGNC 327
+ S++ + + + C KA G E RL P +P YFGN
Sbjct: 251 ------TISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNV 304
Query: 328 VESLAMAAKASDFMTENGIAFVAEKLSDLSKGLEGDDIKGS------KRKIVKLIRMYTQ 381
+ + A A D + + + A K+ D ++ D ++ + + + L+R
Sbjct: 305 IFTATPIAIAGD-LEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHT 363
Query: 382 QPALVLSVAGSTHFGLYESDFGWFRP 407
L + ++++DFGW RP
Sbjct: 364 FKCPNLGITSWVRLPIHDADFGWGRP 389
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 154/386 (39%), Gaps = 61/386 (15%)
Query: 46 LFFYEVAHLTSEIFNLTILPKLKHSLSLTLFHYLPLAGHLTWPSDAEKPAIYYSPN-DGV 104
++FY +S F+ +L K +LS L + P+AG L D I N +GV
Sbjct: 44 VYFYRPTG-SSNFFDAKVL---KDALSRALVPFYPMAGRLKRDEDGR---IEIECNGEGV 96
Query: 105 SVTVAVSNA---DFNILASDGIREAAEFRPLTPQLVISEDKAE--AVAIQITLFPNEGFS 159
A S+ DF A E R L P + S+ + + +Q+T F G S
Sbjct: 97 LFVEAESDGVVDDFGDFAP-----TLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVS 151
Query: 160 IGISFHHVVADGKSSTTFMKAWAYLCKLKATEKNPYLLSPDLTPSFDRTVIK--DTKGLD 217
+G+ H ADG S F+ +W+ + + L L P DRT+++ D
Sbjct: 152 LGVGMRHHAADGFSGLHFINSWSDMARG---------LDVTLPPFIDRTLLRARDPPQPQ 202
Query: 218 MVYLKSMLAAIGSDSSRSLKHDFSAGLVNQNNLVRATFKLTREDINKLRYKVLSINGNQY 277
+++ + S ++ D + + FKLTRE I+ L+ K +GN
Sbjct: 203 FQHIEYQPPPALAVSPQTAASD------SVPETAVSIFKLTREQISALKAKSKE-DGNT- 254
Query: 278 EVGQSKQLHLSTFVLSLSYAYVCMVKANGEEASTND----------RLDPPVPVNYFGNC 327
+ S++ + + + C KA G E RL P +P YFGN
Sbjct: 255 -------ISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNV 307
Query: 328 VESLAMAAKASDFMTENGIAFVAEKLSDLSKGLEGDDIKGS------KRKIVKLIRMYTQ 381
+ + A A D + + + A K+ D ++ D ++ + + + L+R
Sbjct: 308 IFTATPIAIAGD-LEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHT 366
Query: 382 QPALVLSVAGSTHFGLYESDFGWFRP 407
L + ++++DFGW RP
Sbjct: 367 FKXPNLGITSWVRLPIHDADFGWGRP 392
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 154/386 (39%), Gaps = 61/386 (15%)
Query: 46 LFFYEVAHLTSEIFNLTILPKLKHSLSLTLFHYLPLAGHLTWPSDAEKPAIYYSPN-DGV 104
++FY +S F+ +L K +LS L + P+AG L D I N +GV
Sbjct: 44 VYFYRPTG-SSNFFDAKVL---KDALSRALVPFYPMAGRLKRDEDGR---IEIECNGEGV 96
Query: 105 SVTVAVSNA---DFNILASDGIREAAEFRPLTPQLVISEDKAE--AVAIQITLFPNEGFS 159
A S+ DF A E R L P + S+ + + +Q+T F G S
Sbjct: 97 LFVEAESDGVVDDFGDFAP-----TLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVS 151
Query: 160 IGISFHHVVADGKSSTTFMKAWAYLCKLKATEKNPYLLSPDLTPSFDRTVIK--DTKGLD 217
+G+ H ADG S F+ +W+ + + L L P DRT+++ D
Sbjct: 152 LGVGMRHHAADGFSGLHFINSWSDMARG---------LDVTLPPFIDRTLLRARDPPQPQ 202
Query: 218 MVYLKSMLAAIGSDSSRSLKHDFSAGLVNQNNLVRATFKLTREDINKLRYKVLSINGNQY 277
+++ + S ++ D + + FKLTRE I+ L+ K +GN
Sbjct: 203 FQHIEYQPPPALAVSPQTAASD------SVPETAVSIFKLTREQISALKAKSKE-DGNT- 254
Query: 278 EVGQSKQLHLSTFVLSLSYAYVCMVKANGEEASTND----------RLDPPVPVNYFGNC 327
+ S++ + + + C KA G E RL P +P YFGN
Sbjct: 255 -------ISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNV 307
Query: 328 VESLAMAAKASDFMTENGIAFVAEKLSDLSKGLEGDDIKGS------KRKIVKLIRMYTQ 381
+ + A A D + + + A K+ D ++ D ++ + + + L+R
Sbjct: 308 IFTATPIAIAGD-LEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHT 366
Query: 382 QPALVLSVAGSTHFGLYESDFGWFRP 407
L + ++++DFGW RP
Sbjct: 367 FKXPNLGITSWVRLPIHDADFGWGRP 392
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 97/450 (21%), Positives = 166/450 (36%), Gaps = 79/450 (17%)
Query: 1 MAATHNLVRLDEVTKITPFPNSTTSFHLPLTYFDTFWILTPPVERLFFYEVAHLTSEIFN 60
MA V + + +P P S + + ++ D +LT + + FY L S +
Sbjct: 1 MAPQMEKVSEELILPSSPTPQSLKCYKI--SHLDQL-LLTCHIPFILFYP-NPLDSNLDP 56
Query: 61 LTILPKLKHSLSLTLFHYLPLAGHLTWPSDAEKPAIYYSPNDGVSVTVAVSNADFNILAS 120
LK SLS L H+ PLAG + S + + GV A A S
Sbjct: 57 AQTSQHLKQSLSKVLTHFYPLAGRINVNSSVD------CNDSGVPFVEARVQAQL----S 106
Query: 121 DGIREAAEFRPLT--------PQLVISEDKAEAVAIQITLFPNEGFSIGISFHHVVADGK 172
I+ E L P I ++ +A++I+ F G +IG++ H +AD
Sbjct: 107 QAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVL 166
Query: 173 SSTTFMKAWAYLCKLKATEKNPYLLSPDLTPSFDRTVIKDTKGLDMVYLKSMLAAIGSDS 232
S TF+ AW C+ TE + P+FD + +
Sbjct: 167 SLATFLNAWTATCR-GETEI--------VLPNFD---------------------LAARH 196
Query: 233 SRSLKHDFSAGLVNQNNLVRATFKLTREDINKLRYKVLSINGNQYEVGQSKQLHLSTFVL 292
+ + S LV N+V F +E I LR + S S++ + S L
Sbjct: 197 FPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASS---------ASEEKNFSRVQL 247
Query: 293 SLSYAYVCMVKANG------------EEASTNDRLDPPVPVNYFGNCVESLAMAAKASDF 340
++Y + ++ + + R++PP+P GN + +L AA +++
Sbjct: 248 VVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGN-IATLLFAAVDAEW 306
Query: 341 MTENGIAFVAEKLSDLSKGLEGDDIKGSKRKIVKLIRMYTQQPALVLSVAGSTHFGLYES 400
+ + + L LE + + + + +Y +P +LS G Y+
Sbjct: 307 DKD-----FPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQELLSFTSWCRLGFYDL 361
Query: 401 DFGWFRPKKVEIVSVDKTGTIAMSDCRDRD 430
DFGW +P + K + D R D
Sbjct: 362 DFGWGKPLSACTTTFPKRNAALLMDTRSGD 391
>pdb|1IZL|D Chain D, Crystal Structure Of Photosystem Ii
pdb|1IZL|N Chain N, Crystal Structure Of Photosystem Ii
pdb|1S5L|D Chain D, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1S5L|DD Chain d, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1W5C|D Chain D, Photosystem Ii From Thermosynechococcus Elongatus
pdb|1W5C|J Chain J, Photosystem Ii From Thermosynechococcus Elongatus
pdb|2AXT|D Chain D, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|DD Chain d, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|D Chain D, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|D Chain D, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
Of 2). This File Contains Second Monomer Of Psii Dimer
pdb|3KZI|D Chain D, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|D Chain D, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File Contains
First Monomer Of Psii Dimer
pdb|3PRR|D Chain D, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File Contains
Second Monomer Of Psii Dimer
pdb|4FBY|D Chain D, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|Q Chain Q, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4IXQ|D Chain D, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|DD Chain d, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|D Chain D, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|DD Chain d, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 352
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 7 LVRLDEVTKITPF-PNSTTSFHLPLTYFDTFWILTPPVERLFFYEVAHLTSEIFNLTILP 65
++R E+ ++ P + +F P+ F + +++ P + +F+ + + IF +
Sbjct: 126 MLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFF 185
Query: 66 KLKHSLSLTLFHYLPLAGHLTWPSDAEKPAIYYSPNDGVSVTVAVSNADF-NILASDGIR 124
+ H+ +L FH + +AG L G ++ A+ A N L DG
Sbjct: 186 QGFHNWTLNPFHMMGVAGVL-----------------GGALLCAIHGATVENTLFQDG-E 227
Query: 125 EAAEFRPLTP 134
A+ FR P
Sbjct: 228 GASTFRAFNP 237
>pdb|3ARC|D Chain D, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
pdb|3ARC|DD Chain d, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
Length = 342
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 7 LVRLDEVTKITPF-PNSTTSFHLPLTYFDTFWILTPPVERLFFYEVAHLTSEIFNLTILP 65
++R E+ ++ P + +F P+ F + +++ P + +F+ + + IF +
Sbjct: 116 MLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFF 175
Query: 66 KLKHSLSLTLFHYLPLAGHLTWPSDAEKPAIYYSPNDGVSVTVAVSNADF-NILASDGIR 124
+ H+ +L FH + +AG L G ++ A+ A N L DG
Sbjct: 176 QGFHNWTLNPFHMMGVAGVL-----------------GGALLCAIHGATVENTLFQDG-E 217
Query: 125 EAAEFRPLTP 134
A+ FR P
Sbjct: 218 GASTFRAFNP 227
>pdb|1Y7E|A Chain A, The Crystal Structure Of Aminopeptidase I From Borrelia
Burgdorferi B31
Length = 458
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 190 TEKNPYLLSPDLTPSFDRTVIKDTKGLDMVYLKSMLAAIGS 230
E +P + PD+ P DR + ++ K ++V +++ IGS
Sbjct: 156 NENDPVFVIPDILPHLDRKIQRNKKSDEIVEGENLKILIGS 196
>pdb|3A0B|D Chain D, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0B|DD Chain d, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0H|D Chain D, Crystal Structure Of I-Substituted Photosystem Ii Complex
pdb|3A0H|DD Chain d, Crystal Structure Of I-Substituted Photosystem Ii Complex
Length = 340
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 7 LVRLDEVTKITPF-PNSTTSFHLPLTYFDTFWILTPPVERLFFYEVAHLTSEIFNLTILP 65
++R E+ ++ P + +F P+ F + +++ P + +F+ + + IF +
Sbjct: 114 MLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFF 173
Query: 66 KLKHSLSLTLFHYLPLAGHLTWPSDAEKPAIYYSPNDGVSVTVAVSNADF-NILASDGIR 124
+ H+ +L FH + +AG L G ++ A+ A N L DG
Sbjct: 174 QGFHNWTLNPFHMMGVAGVL-----------------GGALLCAIHGATVENTLFQDG-E 215
Query: 125 EAAEFRPLTP 134
A+ FR P
Sbjct: 216 GASTFRAFNP 225
>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSH|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
Length = 236
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 51 VAHLTSEIFNLTILPKLKHSLSLTLFH----YLPLAGHLTWPSDAEKPAIYYSPNDGVSV 106
+++L + L P L H++ + + + H W S AE Y P +
Sbjct: 18 ISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERI 77
Query: 107 TVAVSNADFNILASDGIREAAEFRPLTPQ-LVISED 141
+ AD N + I +RPLTP+ +V++ D
Sbjct: 78 IITKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHD 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,609,135
Number of Sequences: 62578
Number of extensions: 499110
Number of successful extensions: 1148
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 17
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)