Query 036679
Match_columns 294
No_of_seqs 314 out of 2128
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.6 7.8E-15 1.7E-19 146.8 9.3 175 3-178 86-271 (968)
2 PLN00113 leucine-rich repeat r 99.5 1.4E-13 3E-18 137.9 9.8 132 2-135 156-294 (968)
3 PLN03210 Resistant to P. syrin 99.4 4.2E-12 9.1E-17 128.6 11.6 237 2-254 626-902 (1153)
4 PLN03210 Resistant to P. syrin 99.3 7.2E-12 1.6E-16 126.9 10.2 229 2-254 604-878 (1153)
5 KOG4194 Membrane glycoprotein 99.1 1.9E-11 4.1E-16 110.2 2.7 124 124-257 292-428 (873)
6 KOG4341 F-box protein containi 99.1 3E-12 6.5E-17 110.9 -2.9 269 11-289 139-466 (483)
7 KOG4194 Membrane glycoprotein 99.0 6.2E-11 1.3E-15 106.9 1.6 210 31-255 217-449 (873)
8 KOG2120 SCF ubiquitin ligase, 99.0 4E-11 8.8E-16 100.0 -0.6 167 11-177 186-373 (419)
9 KOG0444 Cytoskeletal regulator 99.0 3E-11 6.5E-16 109.8 -2.8 44 1-46 94-137 (1255)
10 KOG2120 SCF ubiquitin ligase, 99.0 1.1E-10 2.4E-15 97.3 0.1 150 8-159 208-376 (419)
11 cd00116 LRR_RI Leucine-rich re 98.9 6.6E-09 1.4E-13 90.9 10.5 249 9-286 22-318 (319)
12 cd00116 LRR_RI Leucine-rich re 98.9 6.3E-09 1.4E-13 91.1 8.4 252 13-288 1-291 (319)
13 KOG4341 F-box protein containi 98.9 2.2E-10 4.8E-15 99.5 -1.1 241 7-254 161-461 (483)
14 PRK15387 E3 ubiquitin-protein 98.8 9.4E-09 2E-13 98.7 7.3 224 2-257 216-457 (788)
15 KOG3207 Beta-tubulin folding c 98.7 2E-09 4.4E-14 94.1 0.8 171 6-177 142-336 (505)
16 PRK15370 E3 ubiquitin-protein 98.6 5.1E-08 1.1E-12 93.9 5.9 18 268-285 408-425 (754)
17 PRK15387 E3 ubiquitin-protein 98.6 9.6E-08 2.1E-12 91.9 7.2 153 11-179 202-354 (788)
18 PF14580 LRR_9: Leucine-rich r 98.6 5.3E-08 1.1E-12 77.2 4.5 126 7-135 16-150 (175)
19 KOG0444 Cytoskeletal regulator 98.6 3.5E-10 7.6E-15 103.1 -8.9 42 2-45 47-88 (1255)
20 PRK15370 E3 ubiquitin-protein 98.4 2.9E-07 6.3E-12 88.8 4.6 221 10-256 199-426 (754)
21 KOG3207 Beta-tubulin folding c 98.4 5.3E-08 1.2E-12 85.4 -0.5 103 77-179 171-283 (505)
22 KOG1909 Ran GTPase-activating 98.3 5E-07 1.1E-11 77.3 3.0 101 78-179 157-282 (382)
23 KOG1909 Ran GTPase-activating 98.2 9.6E-07 2.1E-11 75.6 3.4 38 98-135 90-130 (382)
24 KOG0618 Serine/threonine phosp 98.2 6.4E-07 1.4E-11 85.3 1.2 229 3-255 61-320 (1081)
25 PF14580 LRR_9: Leucine-rich r 98.1 2E-06 4.2E-11 68.3 3.0 101 33-136 17-124 (175)
26 KOG1259 Nischarin, modulator o 98.1 6E-07 1.3E-11 75.6 -0.3 126 9-136 283-410 (490)
27 KOG1947 Leucine rich repeat pr 97.9 1.7E-06 3.6E-11 80.0 -1.1 114 25-138 178-308 (482)
28 KOG0618 Serine/threonine phosp 97.9 1E-06 2.2E-11 84.1 -3.1 129 6-137 355-488 (1081)
29 KOG1947 Leucine rich repeat pr 97.8 5.4E-06 1.2E-10 76.6 1.1 166 7-179 240-439 (482)
30 KOG3665 ZYG-1-like serine/thre 97.8 2E-05 4.3E-10 75.6 4.8 127 7-135 145-285 (699)
31 KOG0617 Ras suppressor protein 97.7 8.9E-07 1.9E-11 68.7 -4.8 163 5-177 28-200 (264)
32 KOG3665 ZYG-1-like serine/thre 97.6 6.1E-05 1.3E-09 72.3 4.3 120 57-179 122-262 (699)
33 KOG0472 Leucine-rich repeat pr 97.6 1.1E-07 2.4E-12 82.7 -12.9 163 76-255 112-285 (565)
34 PRK15386 type III secretion pr 97.5 0.00021 4.6E-09 63.9 6.1 32 125-156 156-187 (426)
35 KOG0617 Ras suppressor protein 97.5 2.1E-06 4.6E-11 66.7 -5.8 142 34-179 32-185 (264)
36 PF13855 LRR_8: Leucine rich r 97.4 9E-05 2E-09 48.0 2.4 57 78-135 1-59 (61)
37 KOG1259 Nischarin, modulator o 97.4 8.9E-05 1.9E-09 62.8 2.3 150 27-179 174-364 (490)
38 KOG1859 Leucine-rich repeat pr 97.4 1.1E-05 2.4E-10 75.5 -3.6 124 3-134 102-263 (1096)
39 PRK15386 type III secretion pr 97.3 0.0015 3.3E-08 58.5 9.0 134 31-177 48-187 (426)
40 PF13855 LRR_8: Leucine rich r 97.2 5.7E-05 1.2E-09 48.9 -0.4 56 10-67 1-59 (61)
41 KOG4237 Extracellular matrix p 97.1 4E-05 8.6E-10 67.0 -2.4 82 165-257 272-358 (498)
42 KOG0472 Leucine-rich repeat pr 97.0 1.1E-05 2.4E-10 70.5 -6.9 126 3-134 176-306 (565)
43 COG4886 Leucine-rich repeat (L 96.9 0.00048 1E-08 62.3 2.5 166 7-179 113-289 (394)
44 PF12799 LRR_4: Leucine Rich r 96.9 0.00072 1.6E-08 40.6 1.9 35 10-46 1-35 (44)
45 COG5238 RNA1 Ran GTPase-activa 96.8 0.0032 7E-08 52.8 6.2 23 9-31 29-51 (388)
46 KOG4658 Apoptotic ATPase [Sign 96.8 0.00088 1.9E-08 66.2 3.4 125 8-134 543-677 (889)
47 KOG4658 Apoptotic ATPase [Sign 96.8 0.00044 9.5E-09 68.3 1.1 82 6-89 567-653 (889)
48 KOG2123 Uncharacterized conser 96.8 0.00012 2.7E-09 61.3 -2.3 107 9-121 18-136 (388)
49 KOG2982 Uncharacterized conser 96.6 0.0017 3.7E-08 55.2 3.2 127 9-136 70-210 (418)
50 PF12799 LRR_4: Leucine Rich r 96.6 0.0033 7.1E-08 37.7 3.5 38 100-140 1-38 (44)
51 KOG2982 Uncharacterized conser 96.6 0.0048 1E-07 52.5 5.5 192 81-285 48-259 (418)
52 COG4886 Leucine-rich repeat (L 96.5 0.0012 2.5E-08 59.8 1.4 157 33-193 114-284 (394)
53 KOG2739 Leucine-rich acidic nu 96.3 0.001 2.2E-08 55.2 0.1 38 98-136 89-127 (260)
54 COG5238 RNA1 Ran GTPase-activa 96.3 0.0053 1.2E-07 51.6 4.0 146 30-177 87-282 (388)
55 KOG1644 U2-associated snRNP A' 96.2 0.005 1.1E-07 49.4 3.3 57 78-135 64-123 (233)
56 KOG2123 Uncharacterized conser 96.0 0.00045 9.8E-09 58.0 -3.4 77 58-135 20-98 (388)
57 PLN03150 hypothetical protein; 95.9 0.0084 1.8E-07 57.6 4.3 100 11-111 419-526 (623)
58 PLN03150 hypothetical protein; 95.7 0.021 4.6E-07 54.9 6.1 78 80-158 420-502 (623)
59 KOG1644 U2-associated snRNP A' 95.6 0.0093 2E-07 47.9 2.7 70 212-290 57-128 (233)
60 KOG0532 Leucine-rich repeat (L 95.5 0.0017 3.7E-08 59.7 -2.2 126 2-134 113-243 (722)
61 KOG3864 Uncharacterized conser 95.3 0.0045 9.7E-08 49.6 -0.1 58 103-161 104-166 (221)
62 KOG0531 Protein phosphatase 1, 95.1 0.0059 1.3E-07 55.7 -0.0 122 9-134 71-195 (414)
63 KOG0532 Leucine-rich repeat (L 94.8 0.00084 1.8E-08 61.6 -6.1 94 59-157 145-245 (722)
64 PF07723 LRR_2: Leucine Rich R 94.8 0.036 7.8E-07 29.0 2.5 25 11-35 1-26 (26)
65 KOG0531 Protein phosphatase 1, 94.6 0.0099 2.1E-07 54.2 0.2 103 6-113 91-199 (414)
66 PF07723 LRR_2: Leucine Rich R 93.7 0.069 1.5E-06 27.9 2.2 25 101-125 1-26 (26)
67 KOG1859 Leucine-rich repeat pr 93.7 0.0051 1.1E-07 58.3 -3.7 55 9-67 186-242 (1096)
68 PF13516 LRR_6: Leucine Rich r 93.4 0.056 1.2E-06 27.5 1.6 22 9-30 1-22 (24)
69 smart00367 LRR_CC Leucine-rich 93.3 0.08 1.7E-06 27.5 2.1 23 9-31 1-24 (26)
70 KOG3864 Uncharacterized conser 93.1 0.019 4E-07 46.2 -0.8 58 13-72 104-166 (221)
71 KOG2739 Leucine-rich acidic nu 93.1 0.035 7.6E-07 46.3 0.6 95 78-174 43-150 (260)
72 PF08387 FBD: FBD; InterPro: 92.3 0.21 4.6E-06 30.8 3.3 38 244-283 13-50 (51)
73 smart00579 FBD domain in FBox 90.4 0.5 1.1E-05 31.4 3.9 41 245-287 5-45 (72)
74 smart00368 LRR_RI Leucine rich 89.3 0.43 9.3E-06 25.3 2.3 23 10-32 2-24 (28)
75 PF13504 LRR_7: Leucine rich r 88.7 0.26 5.6E-06 22.8 1.0 13 10-22 1-13 (17)
76 KOG4237 Extracellular matrix p 82.8 1.4 2.9E-05 39.5 3.3 23 2-24 82-105 (498)
77 PF00560 LRR_1: Leucine Rich R 81.1 1.2 2.6E-05 21.9 1.5 9 127-135 2-10 (22)
78 PF13306 LRR_5: Leucine rich r 79.1 3.2 7E-05 30.5 4.0 54 77-133 57-111 (129)
79 PF13306 LRR_5: Leucine rich r 78.0 3.9 8.6E-05 30.0 4.2 36 96-133 54-89 (129)
80 smart00370 LRR Leucine-rich re 68.3 3.6 7.8E-05 20.9 1.3 15 9-23 1-15 (26)
81 smart00369 LRR_TYP Leucine-ric 68.3 3.6 7.8E-05 20.9 1.3 15 9-23 1-15 (26)
82 KOG4579 Leucine-rich repeat (L 67.6 0.29 6.3E-06 37.2 -4.1 57 78-136 53-111 (177)
83 KOG4579 Leucine-rich repeat (L 64.7 1.3 2.8E-05 33.8 -1.2 35 78-112 77-112 (177)
84 smart00365 LRR_SD22 Leucine-ri 50.6 11 0.00024 19.5 1.3 14 9-22 1-14 (26)
85 KOG3763 mRNA export factor TAP 49.3 8.7 0.00019 36.0 1.2 61 7-68 215-281 (585)
86 KOG3763 mRNA export factor TAP 45.1 17 0.00037 34.1 2.4 74 57-131 218-307 (585)
87 KOG1665 AFH1-interacting prote 27.5 26 0.00057 28.9 0.6 16 99-114 195-210 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=7.8e-15 Score=146.76 Aligned_cols=175 Identities=11% Similarity=0.046 Sum_probs=87.1
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccc---cccCCc
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARV---SICGPN 79 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~---~~~~~~ 79 (294)
|..+..+++|++|+|++|.+++.....+...+++|++|+++++.-........+++|++|++++|.-...+ ....++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 33445677777777777766544444455567777777777664322233334556666666665411111 113456
Q ss_pred ccEEEeeCCCC--CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc--c-ccccceEEee
Q 036679 80 VRLVDISSLHA--PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI--S-SPYLKKLLVR 154 (294)
Q Consensus 80 L~~L~l~~c~~--~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i--~-~~~L~~L~l~ 154 (294)
|+.|++++|.. ..+..+..+++|++|+++++.+++. ++..+.++++|+.|+++++.-...++. . .++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 66666666542 1222344555666666665554432 333345555666666555432211111 1 1455555555
Q ss_pred cccCceeee---ccCCCccEEEEcCce
Q 036679 155 FCNKLYEFK---LDTPNLSVFDYEGDM 178 (294)
Q Consensus 155 ~c~~l~~~~---~~~p~L~~l~~~g~~ 178 (294)
+|.....++ .+.++|++|++.++.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCe
Confidence 554222222 123455555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.47 E-value=1.4e-13 Score=137.87 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=77.6
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccCCcccc---ccc
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARV---SIC 76 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~~l~~~---~~~ 76 (294)
+|..+..+++|++|+|++|.+.. .++..+.++++|++|++++|.-...+ .+.++++|++|+++++.-...+ ...
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 46667788999999999987653 23344678889999999887532221 2345567777777766421111 123
Q ss_pred CCcccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 77 GPNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
.++|+.|++++|... .+..++.+++|++|+++++.+++. ++..+.++++|+.|++++|
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCC
Confidence 456677777666521 223345556666666666655432 2233344555666665554
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=4.2e-12 Score=128.56 Aligned_cols=237 Identities=18% Similarity=0.132 Sum_probs=131.1
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCCccccc--ccC
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARVS--ICG 77 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~l~~~~--~~~ 77 (294)
+|.+...+++|+.|+|+++... ..++. ++.+++|+.|++++|..+..+. +..+++|+.|++++|..++.+. +..
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCC
Confidence 3555667888888888876421 12222 4567888888888887765543 3456778888888777555442 245
Q ss_pred CcccEEEeeCCCCCcccccccccccceEEecccccChH---------------------------HH-HHHhcCCCCCcE
Q 036679 78 PNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNE---------------------------WL-CNQFSELPFLEY 129 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~---------------------------~l-~~l~~~~~~L~~ 129 (294)
++|+.|++++|...... .....+|++|++.++.+..- .+ ......+++|+.
T Consensus 704 ~sL~~L~Lsgc~~L~~~-p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSF-PDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCCEEeCCCCCCcccc-ccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 67777777777411000 00123444444444432210 00 001122467888
Q ss_pred Eeecccccceeecccc---cccceEEeecccCceeeec--cCCCccEEEEcCcee-eee-cCccccceEEEEEEEeccCh
Q 036679 130 LEIFRCMKIRSIKISS---PYLKKLLVRFCNKLYEFKL--DTPNLSVFDYEGDMV-SFS-SNALALSETSLCLDSINVDN 202 (294)
Q Consensus 130 L~l~~c~~l~~l~i~~---~~L~~L~l~~c~~l~~~~~--~~p~L~~l~~~g~~~-~~~-~~~~~L~~~~i~~~~~~~~~ 202 (294)
|++++|+.+..++... ++|+.|++.+|..++.++. +.++|++++++|+.. ..+ ....+++.+.+.-..
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~----- 857 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG----- 857 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC-----
Confidence 8888777666554322 6788888888887776653 457788888887643 111 122345555542111
Q ss_pred hHHHHHHHHHhcCcccceeEEEee-eeeeecchhhhhccCCCCCCCceEEEEE
Q 036679 203 QWLVKFIELLAKLNHCSNVLNLEC-YAAAIIPRELREILSSPLTYENHVCFII 254 (294)
Q Consensus 203 ~~~~~~~~~l~~l~~l~~LL~~~~-~~~~~~p~~~~~~~~~~f~~Lk~L~L~~ 254 (294)
...++..+..+++|+.| .+.. .....+|.. ...+++|+.|.+..
T Consensus 858 --i~~iP~si~~l~~L~~L-~L~~C~~L~~l~~~-----~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 858 --IEEVPWWIEKFSNLSFL-DMNGCNNLQRVSLN-----ISKLKHLETVDFSD 902 (1153)
T ss_pred --CccChHHHhcCCCCCEE-ECCCCCCcCccCcc-----cccccCCCeeecCC
Confidence 11123344566777774 4432 333445543 34556666666654
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.31 E-value=7.2e-12 Score=126.88 Aligned_cols=229 Identities=15% Similarity=0.120 Sum_probs=151.4
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccCCcccccc---cC
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNEDRLARVSI---CG 77 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~~l~~~~~---~~ 77 (294)
+|... .+.+|+.|++.++.+. .+..-+..+++|+.|+++++..++.+. ++.+++|++|++++|..+..+.. ..
T Consensus 604 lP~~f-~~~~L~~L~L~~s~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGSKLE--KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCCcC-CccCCcEEECcCcccc--ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc
Confidence 45444 5789999999999773 344446789999999999988766543 55678999999999986655432 45
Q ss_pred CcccEEEeeCCCC--CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec------------c
Q 036679 78 PNVRLVDISSLHA--PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK------------I 143 (294)
Q Consensus 78 ~~L~~L~l~~c~~--~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~------------i 143 (294)
++|+.|++++|.. ..+..+ .+++|+.|++++|..... ++. ..++|+.|+++++. ++.++ +
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~-~p~---~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKS-FPD---ISTNISWLDLDETA-IEEFPSNLRLENLDELIL 754 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccc-ccc---ccCCcCeeecCCCc-cccccccccccccccccc
Confidence 7899999999862 122222 678999999998853221 221 13455666655432 11111 0
Q ss_pred ---------------------cccccceEEeecccCceeeec---cCCCccEEEEcCcee-eee---cCccccceEEEEE
Q 036679 144 ---------------------SSPYLKKLLVRFCNKLYEFKL---DTPNLSVFDYEGDMV-SFS---SNALALSETSLCL 195 (294)
Q Consensus 144 ---------------------~~~~L~~L~l~~c~~l~~~~~---~~p~L~~l~~~g~~~-~~~---~~~~~L~~~~i~~ 195 (294)
..++|+.|++++|..+..++. +.++|+.|++.++.. ... ...++|+.+.+.
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls- 833 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS- 833 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC-
Confidence 125899999999987766653 578899999988743 111 234567666652
Q ss_pred EEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEE
Q 036679 196 DSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFII 254 (294)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~ 254 (294)
. +.. +..++...++++. |.++.+....+|.. ...+++|+.|.+..
T Consensus 834 -~---c~~----L~~~p~~~~nL~~-L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~ 878 (1153)
T PLN03210 834 -G---CSR----LRTFPDISTNISD-LNLSRTGIEEVPWW-----IEKFSNLSFLDMNG 878 (1153)
T ss_pred -C---CCc----cccccccccccCE-eECCCCCCccChHH-----HhcCCCCCEEECCC
Confidence 1 111 1223344467777 47777777778876 45788999999876
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.14 E-value=1.9e-11 Score=110.16 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCCCcEEeecccccceeecccc----cccceEEeecccCceeeec----cCCCccEEEEcCcee-----eeecCccccce
Q 036679 124 LPFLEYLEIFRCMKIRSIKISS----PYLKKLLVRFCNKLYEFKL----DTPNLSVFDYEGDMV-----SFSSNALALSE 190 (294)
Q Consensus 124 ~~~L~~L~l~~c~~l~~l~i~~----~~L~~L~l~~c~~l~~~~~----~~p~L~~l~~~g~~~-----~~~~~~~~L~~ 190 (294)
+..|+.|++++ +.+.++.+.. ++|+.|+++... ++.+.- ....|++|.++.+.+ ..+.+.++|.+
T Consensus 292 Lt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 292 LTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cchhhhhccch-hhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 44555555554 3344444432 455555555443 222211 122344555554433 12334555665
Q ss_pred EEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679 191 TSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSE 257 (294)
Q Consensus 191 ~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~ 257 (294)
+++.-+.+... . .+....+.+++.|+. |.+.++....+|... ...|.+|+||+|..|..
T Consensus 370 LdLr~N~ls~~--I-EDaa~~f~gl~~Lrk-L~l~gNqlk~I~krA----fsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 370 LDLRSNELSWC--I-EDAAVAFNGLPSLRK-LRLTGNQLKSIPKRA----FSGLEALEHLDLGDNAI 428 (873)
T ss_pred hcCcCCeEEEE--E-ecchhhhccchhhhh-eeecCceeeecchhh----hccCcccceecCCCCcc
Confidence 55521111000 0 011223455777777 466666666676542 45577888888876533
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.12 E-value=3e-12 Score=110.91 Aligned_cols=269 Identities=17% Similarity=0.182 Sum_probs=133.6
Q ss_pred CccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCCCCee---cc-CCCCCccEEEccccCCcccc-----cccCCcc
Q 036679 11 SLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EF-LNLGKLSKFMVRNEDRLARV-----SICGPNV 80 (294)
Q Consensus 11 ~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~-~~l~~L~~L~l~~c~~l~~~-----~~~~~~L 80 (294)
.||.|++++|. +.++.+..+...||++|.|++.+|.++..- ++ ..|++|+.+++..|..+... .-.+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56777777773 455667777777777777777777644211 11 12455555555555533222 2245555
Q ss_pred cEEEeeCCCCCcc----cccc--------------------------cccccceEEeccc-ccChHHHHHHhcCCCCCcE
Q 036679 81 RLVDISSLHAPCG----INVA--------------------------LCKNLKELKLFKL-SITNEWLCNQFSELPFLEY 129 (294)
Q Consensus 81 ~~L~l~~c~~~~~----~~~~--------------------------~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~ 129 (294)
+++++++|..-.. .... .++-+.++++..+ .++|+++..+-..|..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 5555555541000 1112 2233444454454 3666665555556777777
Q ss_pred Eeecccccceeecc-----cccccceEEeecccCcee-----eeccCCCccEEEEcCcee-------eeecCccccceEE
Q 036679 130 LEIFRCMKIRSIKI-----SSPYLKKLLVRFCNKLYE-----FKLDTPNLSVFDYEGDMV-------SFSSNALALSETS 192 (294)
Q Consensus 130 L~l~~c~~l~~l~i-----~~~~L~~L~l~~c~~l~~-----~~~~~p~L~~l~~~g~~~-------~~~~~~~~L~~~~ 192 (294)
|+.++|..+.+..+ .+++|+.+.+..|..+++ +.-+++.|+.++..++.. .-..+++.++++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 77777776655332 225777777777776543 334667777777665543 1123455666665
Q ss_pred EEEEEeccChhHHHHHHHHHhcCccccee-EEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHh
Q 036679 193 LCLDSINVDNQWLVKFIELLAKLNHCSNV-LNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLL 271 (294)
Q Consensus 193 i~~~~~~~~~~~~~~~~~~l~~l~~l~~L-L~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL 271 (294)
++......+. -...+...-.+..+++.+ |+-........-+. ...-++||.+.+.. +..-. ...+..+-
T Consensus 379 lshce~itD~-gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-----l~~c~~Leri~l~~--~q~vt--k~~i~~~~ 448 (483)
T KOG4341|consen 379 LSHCELITDE-GIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-----LSICRNLERIELID--CQDVT--KEAISRFA 448 (483)
T ss_pred hhhhhhhhhh-hhhhhhhccccccccceeeecCCCCchHHHHHH-----HhhCcccceeeeec--hhhhh--hhhhHHHH
Confidence 5311110010 000111111123333333 22111111222222 22235777766664 21111 12345567
Q ss_pred hcCCCCCeeEEeeCCCCC
Q 036679 272 WISPHAETLSIKCNDCDH 289 (294)
Q Consensus 272 ~~~P~le~l~i~~~~~~~ 289 (294)
..+|+.++....+.--++
T Consensus 449 ~~lp~i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 449 THLPNIKVHAYFAPVTPP 466 (483)
T ss_pred hhCccceehhhccCCCCc
Confidence 778888777766643333
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.04 E-value=6.2e-11 Score=106.89 Aligned_cols=210 Identities=15% Similarity=0.131 Sum_probs=117.9
Q ss_pred HhcCCCCCEEEEEcCC--CCCeeccCCCCCccEEEccccC--Cccc-ccccCCcccEEEeeCCCCC--cccccccccccc
Q 036679 31 VAGCPLIERLKIIDCR--GLKSLEFLNLGKLSKFMVRNED--RLAR-VSICGPNVRLVDISSLHAP--CGINVALCKNLK 103 (294)
Q Consensus 31 ~~~~~~Le~L~L~~c~--~l~~l~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~ 103 (294)
+..+|+|+.|+|..+. -.+.+.+.++++|+.+.+..+. .+++ ....+..+++|++..+... ..-.+.++..|+
T Consensus 217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~ 296 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLE 296 (873)
T ss_pred hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhh
Confidence 3445555555554442 1123344455555555555443 2222 1223455666666655421 112344566777
Q ss_pred eEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----cccceEEeecccCceeee----ccCCCccEEEEc
Q 036679 104 ELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----PYLKKLLVRFCNKLYEFK----LDTPNLSVFDYE 175 (294)
Q Consensus 104 ~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~ 175 (294)
.|+++++.|..-.+ ..-+-|++|+.|++++ +.++++.-++ .+|+.|.++... ++.+. ....+|+.|+++
T Consensus 297 ~L~lS~NaI~rih~-d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 297 QLDLSYNAIQRIHI-DSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhccchhhhheeec-chhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCc
Confidence 77777776433111 1124588999999987 4566665444 578888887764 22222 234677888877
Q ss_pred Ccee--------eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCC
Q 036679 176 GDMV--------SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYE 247 (294)
Q Consensus 176 g~~~--------~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~L 247 (294)
.+.+ ..+.+.++|+++++.-+. ....-++-+++++.|+. |++..+.+.++..+. ..++ +|
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq------lk~I~krAfsgl~~LE~-LdL~~NaiaSIq~nA----Fe~m-~L 441 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQ------LKSIPKRAFSGLEALEH-LDLGDNAIASIQPNA----FEPM-EL 441 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCce------eeecchhhhccCcccce-ecCCCCcceeecccc----cccc-hh
Confidence 6654 234567788888773222 11122445677888888 477777666665552 3344 89
Q ss_pred ceEEEEEc
Q 036679 248 NHVCFIIN 255 (294)
Q Consensus 248 k~L~L~~~ 255 (294)
|.|.+...
T Consensus 442 k~Lv~nSs 449 (873)
T KOG4194|consen 442 KELVMNSS 449 (873)
T ss_pred hhhhhccc
Confidence 99988763
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4e-11 Score=99.95 Aligned_cols=167 Identities=15% Similarity=0.190 Sum_probs=119.8
Q ss_pred CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCe--eccCCCCCccEEEccccCCcccc-----cccCCcccEE
Q 036679 11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKS--LEFLNLGKLSKFMVRNEDRLARV-----SICGPNVRLV 83 (294)
Q Consensus 11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~--l~~~~l~~L~~L~l~~c~~l~~~-----~~~~~~L~~L 83 (294)
.|++|+|++..++...+..+.+.|.+|+.|++.+..-=.. ..++.-..|+.+++++|.++.+. ...+.+|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5889999998888888899999999999998887531111 11333468999999999877543 2357889999
Q ss_pred EeeCCCCCcc----cccccccccceEEecccc--cChHHHHHHhcCCCCCcEEeecccccceeecc----cccccceEEe
Q 036679 84 DISSLHAPCG----INVALCKNLKELKLFKLS--ITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI----SSPYLKKLLV 153 (294)
Q Consensus 84 ~l~~c~~~~~----~~~~~~~~L~~L~L~~~~--i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i----~~~~L~~L~l 153 (294)
++++|....+ ....--++|+.|+++++. +.+..+..+...||.|..||+++|..++.--+ ..+.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 9999973322 111233789999999874 55556778888999999999999988775211 1268999999
Q ss_pred ecccCce---eeec-cCCCccEEEEcCc
Q 036679 154 RFCNKLY---EFKL-DTPNLSVFDYEGD 177 (294)
Q Consensus 154 ~~c~~l~---~~~~-~~p~L~~l~~~g~ 177 (294)
+.|..+. -+++ ..|.|.+|++.|+
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 9998653 2333 3567777776665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.98 E-value=3e-11 Score=109.85 Aligned_cols=44 Identities=16% Similarity=0.025 Sum_probs=34.3
Q ss_pred CCCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC
Q 036679 1 DSPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR 46 (294)
Q Consensus 1 ~~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~ 46 (294)
|||.++.++..|..|+|+.|++. ..+.-+..-.++-.|+|+++.
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNN 137 (1255)
T ss_pred CCCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCc
Confidence 58999999999999999999874 333334556778888888864
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.1e-10 Score=97.34 Aligned_cols=150 Identities=20% Similarity=0.272 Sum_probs=112.7
Q ss_pred CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee----ccCCCCCccEEEccccCCcccc-----cccCC
Q 036679 8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL----EFLNLGKLSKFMVRNEDRLARV-----SICGP 78 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l----~~~~l~~L~~L~l~~c~~l~~~-----~~~~~ 78 (294)
.|.+||.|+|.+.++.|.... -+..-.+|++|++++|.++..- -+++|..|..|+++.|.-..+. ....+
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 467899999999999765444 4577799999999999987543 2467899999999999733322 22468
Q ss_pred cccEEEeeCCCCC---cc--cccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeeccccccee---eccc-cccc
Q 036679 79 NVRLVDISSLHAP---CG--INVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKIRS---IKIS-SPYL 148 (294)
Q Consensus 79 ~L~~L~l~~c~~~---~~--~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l~~---l~i~-~~~L 148 (294)
+|..|+++||.-. .. .-...||+|..|+|+++. +++. .-..+-.++.|++|.++.|..+.- +... .|+|
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence 8999999999621 11 224689999999999974 6664 444466799999999999987531 2222 3899
Q ss_pred ceEEeecccCc
Q 036679 149 KKLLVRFCNKL 159 (294)
Q Consensus 149 ~~L~l~~c~~l 159 (294)
.+|++.+|-.-
T Consensus 366 ~yLdv~g~vsd 376 (419)
T KOG2120|consen 366 VYLDVFGCVSD 376 (419)
T ss_pred EEEEeccccCc
Confidence 99999998644
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=6.6e-09 Score=90.94 Aligned_cols=249 Identities=14% Similarity=0.026 Sum_probs=112.3
Q ss_pred CCCccEEEeeecccChH---HHHHHHhcCCCCCEEEEEcCCCCC------ee--ccCCCCCccEEEccccCCcc---ccc
Q 036679 9 LSSLRELGLFKCAANDE---AIRDIVAGCPLIERLKIIDCRGLK------SL--EFLNLGKLSKFMVRNEDRLA---RVS 74 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~---~l~~~~~~~~~Le~L~L~~c~~l~------~l--~~~~l~~L~~L~l~~c~~l~---~~~ 74 (294)
+++|++|+++++.+++. .+...+...+.+++|+++++.--. .+ .+..+++|++|++++|..-. ...
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 34466666666666543 233344555666666666543110 00 11234566666666554210 000
Q ss_pred ccC---CcccEEEeeCCCCCcc------cccccc-cccceEEecccccChHH---HHHHhcCCCCCcEEeeccccccee-
Q 036679 75 ICG---PNVRLVDISSLHAPCG------INVALC-KNLKELKLFKLSITNEW---LCNQFSELPFLEYLEIFRCMKIRS- 140 (294)
Q Consensus 75 ~~~---~~L~~L~l~~c~~~~~------~~~~~~-~~L~~L~L~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~~l~~- 140 (294)
... ++|+.|++++|..... ..+..+ ++|+.|+++++.+++.. +...+..++.|+.|++++|. ++.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchH
Confidence 011 3366666666543210 112233 55666666666555321 22334445566666666543 211
Q ss_pred ----ecc---cccccceEEeecccCce----ee---eccCCCccEEEEcCceeeeecCccccceEEEEEEEeccCh-hHH
Q 036679 141 ----IKI---SSPYLKKLLVRFCNKLY----EF---KLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDN-QWL 205 (294)
Q Consensus 141 ----l~i---~~~~L~~L~l~~c~~l~----~~---~~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~~~~-~~~ 205 (294)
+.. ..++|++|++++|..-. .+ .-..|+|+.++++++.+ .. ...
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l---------------------~~~~~~ 239 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL---------------------TDAGAA 239 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC---------------------chHHHH
Confidence 100 01355556555553210 00 01233444444444321 11 011
Q ss_pred HHHHHHHhcCcccceeEEEeeeeee-----ecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCee
Q 036679 206 VKFIELLAKLNHCSNVLNLECYAAA-----IIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETL 280 (294)
Q Consensus 206 ~~~~~~l~~l~~l~~LL~~~~~~~~-----~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l 280 (294)
.....+....+.++.| .+...... .+.+. .+.+++|+++.+..|..... +...+..-+....++++++
T Consensus 240 ~l~~~~~~~~~~L~~L-~l~~n~i~~~~~~~l~~~-----~~~~~~L~~l~l~~N~l~~~-~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 240 ALASALLSPNISLLTL-SLSCNDITDDGAKDLAEV-----LAEKESLLELDLRGNKFGEE-GAQLLAESLLEPGNELESL 312 (319)
T ss_pred HHHHHHhccCCCceEE-EccCCCCCcHHHHHHHHH-----HhcCCCccEEECCCCCCcHH-HHHHHHHHHhhcCCchhhc
Confidence 1111122234677775 55433221 22222 44557899999987544222 2233333344444899998
Q ss_pred EEeeCC
Q 036679 281 SIKCND 286 (294)
Q Consensus 281 ~i~~~~ 286 (294)
.+..++
T Consensus 313 ~~~~~~ 318 (319)
T cd00116 313 WVKDDS 318 (319)
T ss_pred ccCCCC
Confidence 876654
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.88 E-value=6.3e-09 Score=91.06 Aligned_cols=252 Identities=17% Similarity=0.099 Sum_probs=146.8
Q ss_pred cEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCC----CCee--ccCCCCCccEEEccccCCc------ccc---cccC
Q 036679 13 RELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRG----LKSL--EFLNLGKLSKFMVRNEDRL------ARV---SICG 77 (294)
Q Consensus 13 k~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~----l~~l--~~~~l~~L~~L~l~~c~~l------~~~---~~~~ 77 (294)
+.|+|..+.++++....++...+.|++|++++|.- ...+ .+...+.+++++++++..- ..+ ....
T Consensus 1 ~~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred CccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 35788888887766667778888899999999862 1111 1234567899988876421 111 1135
Q ss_pred CcccEEEeeCCCCCc--ccccccc---cccceEEecccccChHHHH---HHhcCC-CCCcEEeecccccce----eec--
Q 036679 78 PNVRLVDISSLHAPC--GINVALC---KNLKELKLFKLSITNEWLC---NQFSEL-PFLEYLEIFRCMKIR----SIK-- 142 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~--~~~~~~~---~~L~~L~L~~~~i~~~~l~---~l~~~~-~~L~~L~l~~c~~l~----~l~-- 142 (294)
++|+.|++++|.... ...+..+ ++|++|++.++.+++.... ..+..+ ++|+.|++++|.--. .+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 789999999887431 1122222 4599999999888764433 334556 889999999875221 111
Q ss_pred c-cccccceEEeecccCce----eee---ccCCCccEEEEcCceeeeecCccccceEEEEEEEeccChhHHHHHHHHHhc
Q 036679 143 I-SSPYLKKLLVRFCNKLY----EFK---LDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAK 214 (294)
Q Consensus 143 i-~~~~L~~L~l~~c~~l~----~~~---~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~ 214 (294)
+ ..++|++|++.+|..-. .+. ...++|+.++++++.. .......+...+..
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i---------------------~~~~~~~l~~~~~~ 219 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL---------------------TDEGASALAETLAS 219 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc---------------------ChHHHHHHHHHhcc
Confidence 1 11478888887775321 111 1223555555554421 11122234455666
Q ss_pred CcccceeEEEeeeeeee-cchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCCC
Q 036679 215 LNHCSNVLNLECYAAAI-IPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCD 288 (294)
Q Consensus 215 l~~l~~LL~~~~~~~~~-~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~~ 288 (294)
+++|+.| .++.+.... ....+..........|++|.+..+...+. +... +...+...|+|+.+.+..++-+
T Consensus 220 ~~~L~~L-~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~-~~~~-l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 220 LKSLEVL-NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD-GAKD-LAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred cCCCCEE-ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH-HHHH-HHHHHhcCCCccEEECCCCCCc
Confidence 7788885 666543221 11122221122357999999997543222 2233 3445666699999999886544
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.87 E-value=2.2e-10 Score=99.51 Aligned_cols=241 Identities=15% Similarity=0.181 Sum_probs=150.9
Q ss_pred CCCCCccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCCCCeec----cCCCCCccEEEccccCCc-----cccccc
Q 036679 7 VTLSSLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNEDRL-----ARVSIC 76 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c~~l-----~~~~~~ 76 (294)
..+|+++.|.+.+|. ++|..+..+...|++|+.|++..|..+.... ..+|++|+++++++|+.+ +.+..+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 457888888888884 6777778888888888888888887653221 236788888888888733 233334
Q ss_pred CCcccEEEeeCCCC--------------------------Cccc----ccccccccceEEeccc-ccChHHHHHHhcCCC
Q 036679 77 GPNVRLVDISSLHA--------------------------PCGI----NVALCKNLKELKLFKL-SITNEWLCNQFSELP 125 (294)
Q Consensus 77 ~~~L~~L~l~~c~~--------------------------~~~~----~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~ 125 (294)
+..++.+..+||.. .... .-.+|..|+.+..+++ .+++..+..+..+|+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 44555554555530 0000 0134677888888886 577777888888999
Q ss_pred CCcEEeecccccceeec-----ccccccceEEeecccCce-----eeeccCCCccEEEEcCcee---e---eecC-cccc
Q 036679 126 FLEYLEIFRCMKIRSIK-----ISSPYLKKLLVRFCNKLY-----EFKLDTPNLSVFDYEGDMV---S---FSSN-ALAL 188 (294)
Q Consensus 126 ~L~~L~l~~c~~l~~l~-----i~~~~L~~L~l~~c~~l~-----~~~~~~p~L~~l~~~g~~~---~---~~~~-~~~L 188 (294)
+|+.|.++.|..+++.. -.++.|+.+++..|.... .+..++|.|+.+.++.+.. . .+.. .-++
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 99999999998765532 234789999999987654 3457888999888774422 0 0000 0112
Q ss_pred ceEEEEEEEeccChhHHHHHHHHHhcCccccee-E-EEeeeeeeecchhhhhccCCCCCCCceEEEEE
Q 036679 189 SETSLCLDSINVDNQWLVKFIELLAKLNHCSNV-L-NLECYAAAIIPRELREILSSPLTYENHVCFII 254 (294)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~L-L-~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~ 254 (294)
..+.+ -.++.........-+++..+++++.+ + .+.....+.+.+. ...+++++...+..
T Consensus 401 ~~l~~--lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~-----~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 401 EGLEV--LELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF-----ATHLPNIKVHAYFA 461 (483)
T ss_pred cccce--eeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH-----HhhCccceehhhcc
Confidence 22222 11222334455566788999999997 3 4444444444333 34456666666553
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=9.4e-09 Score=98.69 Aligned_cols=224 Identities=15% Similarity=0.042 Sum_probs=108.3
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCccc
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVR 81 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~ 81 (294)
+|..+. ++|+.|++.+|.++. ++ ...++|++|+++++ .+..+.- ..++|+.|+++++. +..+.....+|+
T Consensus 216 LP~~l~--~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N-~LtsLP~-lp~sL~~L~Ls~N~-L~~Lp~lp~~L~ 285 (788)
T PRK15387 216 LPDCLP--AHITTLVIPDNNLTS--LP---ALPPELRTLEVSGN-QLTSLPV-LPPGLLELSIFSNP-LTHLPALPSGLC 285 (788)
T ss_pred CCcchh--cCCCEEEccCCcCCC--CC---CCCCCCcEEEecCC-ccCcccC-cccccceeeccCCc-hhhhhhchhhcC
Confidence 455443 478888888887742 22 23578888888876 4444331 23466666666653 222211223455
Q ss_pred EEEeeCCCCCcccccccccccceEEecccccChHHHHHHh----------------cC-CCCCcEEeecccccceeeccc
Q 036679 82 LVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQF----------------SE-LPFLEYLEIFRCMKIRSIKIS 144 (294)
Q Consensus 82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~----------------~~-~~~L~~L~l~~c~~l~~l~i~ 144 (294)
.|++++|....-. ...++|+.|++++|.++. ++.+. .. .++|+.|++++ +.++.++..
T Consensus 286 ~L~Ls~N~Lt~LP--~~p~~L~~LdLS~N~L~~--Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~l 360 (788)
T PRK15387 286 KLWIFGNQLTSLP--VLPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPTL 360 (788)
T ss_pred EEECcCCcccccc--ccccccceeECCCCcccc--CCCCcccccccccccCccccccccccccceEecCC-CccCCCCCC
Confidence 5555555421100 112445555555554432 11100 01 12566666655 234443322
Q ss_pred ccccceEEeecccCceeeeccCCCccEEEEcCceeeee-cCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEE
Q 036679 145 SPYLKKLLVRFCNKLYEFKLDTPNLSVFDYEGDMVSFS-SNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLN 223 (294)
Q Consensus 145 ~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~g~~~~~~-~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~ 223 (294)
.++|+.|+++++. ++.++-..++|+.|+++++.+... ...++|+.+.+..+.+ ..++....+++. |+
T Consensus 361 p~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~L----------ssIP~l~~~L~~-L~ 428 (788)
T PRK15387 361 PSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRL----------TSLPMLPSGLLS-LS 428 (788)
T ss_pred Ccccceehhhccc-cccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcC----------CCCCcchhhhhh-hh
Confidence 3455666555443 333333334666666666654211 1223455554421111 111112234444 45
Q ss_pred EeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679 224 LECYAAAIIPRELREILSSPLTYENHVCFIINSE 257 (294)
Q Consensus 224 ~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~ 257 (294)
++.+....+|+. ...+.+|+.|.|+.|..
T Consensus 429 Ls~NqLt~LP~s-----l~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 429 VYRNQLTRLPES-----LIHLSSETTVNLEGNPL 457 (788)
T ss_pred hccCcccccChH-----HhhccCCCeEECCCCCC
Confidence 555555667765 34567888888877533
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2e-09 Score=94.08 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=114.5
Q ss_pred CCCCCCccEEEeeecccCh-HHHHHHHhcCCCCCEEEEEcCCCC---CeeccCCCCCccEEEccccC-C---cccccccC
Q 036679 6 NVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIERLKIIDCRGL---KSLEFLNLGKLSKFMVRNED-R---LARVSICG 77 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~-~~l~~~~~~~~~Le~L~L~~c~~l---~~l~~~~l~~L~~L~l~~c~-~---l~~~~~~~ 77 (294)
.-.|++++.|+|+.|-++. ..+.+++..+|+||.|+++.+.-. ....-..+++|+.|.+++|. . +..+...+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 3458999999999997765 677889999999999999987521 11111135789999999995 2 22234468
Q ss_pred CcccEEEeeCCC-C-CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----------c
Q 036679 78 PNVRLVDISSLH-A-PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----------S 145 (294)
Q Consensus 78 ~~L~~L~l~~c~-~-~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----------~ 145 (294)
|+|+.|.+.++. . .......-+..|++|+|+++.+-+.......+.+|.|+.|+++.|. +.++... .
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccc
Confidence 999999998884 1 1112233456799999999986654444557789999999998753 4444322 1
Q ss_pred cccceEEeecccC--ceeee--ccCCCccEEEEcCc
Q 036679 146 PYLKKLLVRFCNK--LYEFK--LDTPNLSVFDYEGD 177 (294)
Q Consensus 146 ~~L~~L~l~~c~~--l~~~~--~~~p~L~~l~~~g~ 177 (294)
++|++|++...+. ...+. ...++|+.+.+.+.
T Consensus 301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 6899999987764 22221 12456666665544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.61 E-value=5.1e-08 Score=93.94 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=7.9
Q ss_pred HHHhhcCCCCCeeEEeeC
Q 036679 268 DSLLWISPHAETLSIKCN 285 (294)
Q Consensus 268 ~~lL~~~P~le~l~i~~~ 285 (294)
..++..+|.++++.+..+
T Consensus 408 ~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred HHHhhcCCCccEEEeeCC
Confidence 333444444444444443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.59 E-value=9.6e-08 Score=91.86 Aligned_cols=153 Identities=20% Similarity=0.130 Sum_probs=96.3
Q ss_pred CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccEEEeeCCCC
Q 036679 11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHA 90 (294)
Q Consensus 11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~ 90 (294)
.-+.|+++++.++ .++.-+ .++|+.|++.++ +++.+. ...++|++|+++++ .+..+....++|+.|++.+|.+
T Consensus 202 ~~~~LdLs~~~Lt--sLP~~l--~~~L~~L~L~~N-~Lt~LP-~lp~~Lk~LdLs~N-~LtsLP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 202 GNAVLNVGESGLT--TLPDCL--PAHITTLVIPDN-NLTSLP-ALPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CCcEEEcCCCCCC--cCCcch--hcCCCEEEccCC-cCCCCC-CCCCCCcEEEecCC-ccCcccCcccccceeeccCCch
Confidence 3456788888764 232212 147888888875 455444 23478999999887 4444433457888998888863
Q ss_pred CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeecccCceeeeccCCCcc
Q 036679 91 PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNLS 170 (294)
Q Consensus 91 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~~l~~~~~~~p~L~ 170 (294)
.... ....+|+.|++.+|.++. ++. ..++|+.|+++++ .++.++....+|+.|++++|. ++.++.-.++|+
T Consensus 275 ~~Lp--~lp~~L~~L~Ls~N~Lt~--LP~---~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~-L~~LP~lp~~Lq 345 (788)
T PRK15387 275 THLP--ALPSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQ-LTSLPTLPSGLQ 345 (788)
T ss_pred hhhh--hchhhcCEEECcCCcccc--ccc---cccccceeECCCC-ccccCCCCcccccccccccCc-cccccccccccc
Confidence 2111 123578889998887764 332 3478999999885 455554333567778777764 334443234677
Q ss_pred EEEEcCcee
Q 036679 171 VFDYEGDMV 179 (294)
Q Consensus 171 ~l~~~g~~~ 179 (294)
.|+++++.+
T Consensus 346 ~LdLS~N~L 354 (788)
T PRK15387 346 ELSVSDNQL 354 (788)
T ss_pred eEecCCCcc
Confidence 888777655
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=5.3e-08 Score=77.21 Aligned_cols=126 Identities=18% Similarity=0.152 Sum_probs=42.3
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--Cccc-ccccCCcccE
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLAR-VSICGPNVRL 82 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~ 82 (294)
.+.-+++.|+|.++.++ .+..+-..+.+|+.|++++|. ++.+ .+..+++|++|+++++. .+.. +...+|+|+.
T Consensus 16 ~n~~~~~~L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS--TIENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34556788888888773 333333356788888888874 3222 13456778888887764 2221 1124677888
Q ss_pred EEeeCCCCCcc---cccccccccceEEecccccChHH--HHHHhcCCCCCcEEeeccc
Q 036679 83 VDISSLHAPCG---INVALCKNLKELKLFKLSITNEW--LCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 83 L~l~~c~~~~~---~~~~~~~~L~~L~L~~~~i~~~~--l~~l~~~~~~L~~L~l~~c 135 (294)
|.++++.+... ..+..+++|+.|++.+|.+++.. -..++..+|+|+.||-...
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 87777763211 23456777777777777765421 2334556777777765443
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.59 E-value=3.5e-10 Score=103.06 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=25.2
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcC
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDC 45 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c 45 (294)
+|.-+..+.+|+.|+++.|++ ..+..-++.+|.|+.+.+..+
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhHHHhhhcc
Confidence 566666677777777777765 233333455566666555544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.38 E-value=2.9e-07 Score=88.79 Aligned_cols=221 Identities=14% Similarity=0.144 Sum_probs=115.1
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccc-cCCcccEEEeeCC
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSI-CGPNVRLVDISSL 88 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~c 88 (294)
++|+.|+|++|.++. ++..+ +++|+.|++++| ++..+...-.++|+.|++++|. +..+.. ...+|+.|+++++
T Consensus 199 ~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N-~LtsLP~~l~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKS--LPENL--QGNIKTLYANSN-QLTSIPATLPDTIQEMELSINR-ITELPERLPSALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCc--CChhh--ccCCCEEECCCC-ccccCChhhhccccEEECcCCc-cCcCChhHhCCCCEEECcCC
Confidence 468888888887642 22212 257888888776 3444432223467788887764 222211 1246788888776
Q ss_pred CCCc-ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc-ccccceEEeecccCceeeecc-
Q 036679 89 HAPC-GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS-SPYLKKLLVRFCNKLYEFKLD- 165 (294)
Q Consensus 89 ~~~~-~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~-~~~L~~L~l~~c~~l~~~~~~- 165 (294)
.+.. +.. -+++|+.|++++|.++. ++..+ .+.|+.|+++++ .++.++.. .++|+.|++.+|. ++.++..
T Consensus 273 ~L~~LP~~--l~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l 344 (754)
T PRK15370 273 KISCLPEN--LPEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSN-SLTALPETLPPGLKTLEAGENA-LTSLPASL 344 (754)
T ss_pred ccCccccc--cCCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCC-ccccCCccccccceeccccCCc-cccCChhh
Confidence 5321 111 22578888888776653 22111 135667777663 34443322 2577777777765 3334321
Q ss_pred CCCccEEEEcCceeeee--cCccccceEEEEEEEeccChhHHHHHHHHHhcC-cccceeEEEeeeeeeecchhhhhccCC
Q 036679 166 TPNLSVFDYEGDMVSFS--SNALALSETSLCLDSINVDNQWLVKFIELLAKL-NHCSNVLNLECYAAAIIPRELREILSS 242 (294)
Q Consensus 166 ~p~L~~l~~~g~~~~~~--~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l-~~l~~LL~~~~~~~~~~p~~~~~~~~~ 242 (294)
.++|+.|+++++....+ ..+++|+.+.+.-+.+ ..++..+ ..++. |.++.+....+|+.+... ..
T Consensus 345 ~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~L----------t~LP~~l~~sL~~-LdLs~N~L~~LP~sl~~~-~~ 412 (754)
T PRK15370 345 PPELQVLDVSKNQITVLPETLPPTITTLDVSRNAL----------TNLPENLPAALQI-MQASRNNLVRLPESLPHF-RG 412 (754)
T ss_pred cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcC----------CCCCHhHHHHHHH-HhhccCCcccCchhHHHH-hh
Confidence 25777777777654211 1124566665521111 1111111 23455 355555555666553221 22
Q ss_pred CCCCCceEEEEEcc
Q 036679 243 PLTYENHVCFIINS 256 (294)
Q Consensus 243 ~f~~Lk~L~L~~~~ 256 (294)
..+++..|.+..|.
T Consensus 413 ~~~~l~~L~L~~Np 426 (754)
T PRK15370 413 EGPQPTRIIVEYNP 426 (754)
T ss_pred cCCCccEEEeeCCC
Confidence 34567778777653
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.3e-08 Score=85.38 Aligned_cols=103 Identities=18% Similarity=0.060 Sum_probs=59.0
Q ss_pred CCcccEEEeeCCCCCcc---cccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc---cccce
Q 036679 77 GPNVRLVDISSLHAPCG---INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---PYLKK 150 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~~~---~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~~L~~ 150 (294)
.|+|+.|.++.+.+..+ ..-..+++|+.|.+.+|.++..++..++..||+|+.|.+.+...+..-..+. ..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 45555555555542211 1112456777777777777766677777778888888877654332211111 46777
Q ss_pred EEeecccCcee----eeccCCCccEEEEcCcee
Q 036679 151 LLVRFCNKLYE----FKLDTPNLSVFDYEGDMV 179 (294)
Q Consensus 151 L~l~~c~~l~~----~~~~~p~L~~l~~~g~~~ 179 (294)
|++++...+.. .....|+|+.+.++.+++
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCc
Confidence 77777665431 123456666666655544
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.27 E-value=5e-07 Score=77.28 Aligned_cols=101 Identities=21% Similarity=0.291 Sum_probs=47.8
Q ss_pred CcccEEEeeCCCCCc------ccccccccccceEEecccccChHHH---HHHhcCCCCCcEEeeccccccee---ecc--
Q 036679 78 PNVRLVDISSLHAPC------GINVALCKNLKELKLFKLSITNEWL---CNQFSELPFLEYLEIFRCMKIRS---IKI-- 143 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~------~~~~~~~~~L~~L~L~~~~i~~~~l---~~l~~~~~~L~~L~l~~c~~l~~---l~i-- 143 (294)
+.|+.+....+.+-. ...+..++.|+.+.+..+.|..+++ ...+..|++|+.|+|.+.. ++. ..+
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHH
Confidence 455555555554211 0123445566666666665544332 2334456666666666532 111 001
Q ss_pred --c-ccccceEEeecccCce--------eeeccCCCccEEEEcCcee
Q 036679 144 --S-SPYLKKLLVRFCNKLY--------EFKLDTPNLSVFDYEGDMV 179 (294)
Q Consensus 144 --~-~~~L~~L~l~~c~~l~--------~~~~~~p~L~~l~~~g~~~ 179 (294)
+ .++|+.|++.+|-.-. .+.-.+|+|+.+.+.|+.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 1 1456666666663211 1112366777777666643
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.21 E-value=9.6e-07 Score=75.59 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=21.6
Q ss_pred cccccceEEecccccChH---HHHHHhcCCCCCcEEeeccc
Q 036679 98 LCKNLKELKLFKLSITNE---WLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 98 ~~~~L~~L~L~~~~i~~~---~l~~l~~~~~~L~~L~l~~c 135 (294)
+||.|++++|++|.+... .+..++++|..|+.|.+.+|
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 445566666666554432 24455566666666666665
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.15 E-value=6.4e-07 Score=85.34 Aligned_cols=229 Identities=18% Similarity=0.136 Sum_probs=117.7
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCC-cccc-c----
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDR-LARV-S---- 74 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~-l~~~-~---- 74 (294)
|..+-.+++|+.|.++.+.+ ...+.-++++.+|++|.|.... +..+. ++.+.+|+.|+++.+.. ..+. .
T Consensus 61 p~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt 137 (1081)
T KOG0618|consen 61 PIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLT 137 (1081)
T ss_pred CchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhh
Confidence 44455566777777777755 3334456667777777776542 33322 33445666666665541 1100 0
Q ss_pred ---------------ccCCcccEEEeeCCCCC--cccccccccccc-eEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 75 ---------------ICGPNVRLVDISSLHAP--CGINVALCKNLK-ELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 75 ---------------~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~-~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
.....++.+++..+... ...++ .+++ .|+|.++.++.. .++.++.|+.+... +.
T Consensus 138 ~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i---~~l~~~ldLr~N~~~~~----dls~~~~l~~l~c~-rn 209 (1081)
T KOG0618|consen 138 AEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI---YNLTHQLDLRYNEMEVL----DLSNLANLEVLHCE-RN 209 (1081)
T ss_pred HHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch---hhhheeeecccchhhhh----hhhhccchhhhhhh-hc
Confidence 01112333333333211 11222 2344 488888876522 24568888888755 36
Q ss_pred cceeecccccccceEEeecccCceeeeccC-CCccEEEEcCceeee----ecCccccceEEEEEEEeccChhHHHHHHHH
Q 036679 137 KIRSIKISSPYLKKLLVRFCNKLYEFKLDT-PNLSVFDYEGDMVSF----SSNALALSETSLCLDSINVDNQWLVKFIEL 211 (294)
Q Consensus 137 ~l~~l~i~~~~L~~L~l~~c~~l~~~~~~~-p~L~~l~~~g~~~~~----~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~ 211 (294)
.+..+.+..++|+.|+.+.|+..+...-.. .+|++++++...... ...+.+++.+.+..+. + ..+..=
T Consensus 210 ~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~------l-~~lp~r 282 (1081)
T KOG0618|consen 210 QLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR------L-VALPLR 282 (1081)
T ss_pred ccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh------H-HhhHHH
Confidence 677888888999999999998653222222 367777776543311 1234455555542111 1 111111
Q ss_pred HhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEc
Q 036679 212 LAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIIN 255 (294)
Q Consensus 212 l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~ 255 (294)
+...+.|+. +.+..++.+-+|+. ..++..|++|.|..|
T Consensus 283 i~~~~~L~~-l~~~~nel~yip~~-----le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 283 ISRITSLVS-LSAAYNELEYIPPF-----LEGLKSLRTLDLQSN 320 (1081)
T ss_pred HhhhhhHHH-HHhhhhhhhhCCCc-----ccccceeeeeeehhc
Confidence 122233333 34444444455544 344566666666543
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=2e-06 Score=68.29 Aligned_cols=101 Identities=22% Similarity=0.217 Sum_probs=22.1
Q ss_pred cCCCCCEEEEEcCC--CCCeeccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCCCcc-ccc-ccccccceEE
Q 036679 33 GCPLIERLKIIDCR--GLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAPCG-INV-ALCKNLKELK 106 (294)
Q Consensus 33 ~~~~Le~L~L~~c~--~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~~~-~~~-~~~~~L~~L~ 106 (294)
++..+++|+|.++. .++.+. ..+.+|+.|++++|. .++.+. ..++|+.|+++++..... ..+ ..+|+|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~l~-~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEGLP-GLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccchh-hhhcCCCEEECCCCCCccccCcc-ChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34456777776653 222222 124566666666653 222211 234555555555542211 111 2345555555
Q ss_pred ecccccChH-HHHHHhcCCCCCcEEeecccc
Q 036679 107 LFKLSITNE-WLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 107 L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~ 136 (294)
++++.+.+- .+. -++.+|+|+.|++.+.+
T Consensus 95 L~~N~I~~l~~l~-~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 95 LSNNKISDLNELE-PLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TTS---SCCCCG-GGGG-TT--EEE-TT-G
T ss_pred CcCCcCCChHHhH-HHHcCCCcceeeccCCc
Confidence 555554331 111 13345555555555433
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.09 E-value=6e-07 Score=75.55 Aligned_cols=126 Identities=18% Similarity=0.114 Sum_probs=85.7
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--CcccccccCCcccEEEee
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDIS 86 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~ 86 (294)
...|..|+|++|.+ ..+.+.+.-.|.++.|+++++.-...-++..+++|+.|+++++. .+.......-++++|.++
T Consensus 283 Wq~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccch--hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 46788999999977 45666677789999999999864433345567889999988764 222222334567778777
Q ss_pred CCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 87 SLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 87 ~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
++....-..++.+-+|..|++.+++|..-+-...+++.|.||.+.+.+.+
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 77533223445566788888888877653333446778888888777654
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.90 E-value=1.7e-06 Score=80.00 Aligned_cols=114 Identities=20% Similarity=0.311 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCeec----cCCCCCccEEEcccc-CCc-------ccccccCCcccEEEeeCCCCCc
Q 036679 25 EAIRDIVAGCPLIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNE-DRL-------ARVSICGPNVRLVDISSLHAPC 92 (294)
Q Consensus 25 ~~l~~~~~~~~~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c-~~l-------~~~~~~~~~L~~L~l~~c~~~~ 92 (294)
.....+...+|.|+.|.+.+|..+.... ...++.|+.|++++| ... ..+...+++|+.+++++|....
T Consensus 178 ~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 178 KILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 4444455556666666666665543211 123466666666652 111 0112234666666666665211
Q ss_pred c----cccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeecccccc
Q 036679 93 G----INVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKI 138 (294)
Q Consensus 93 ~----~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l 138 (294)
. .....|++|++|.+..+. ++++++..+...|+.|+.|++++|..+
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1 112346777777766665 677677777777777777777776655
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.87 E-value=1e-06 Score=84.06 Aligned_cols=129 Identities=18% Similarity=0.162 Sum_probs=92.8
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--CcccccccCCcc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLARVSICGPNV 80 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L 80 (294)
...++.|+.|++.+|.++|+.++. +.++++|+.|+|+++. +..+ .+.+++.|++|+++++. .+......++.|
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL 432 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence 345778899999999999888775 5778999999999983 2222 23456778888888874 232223356778
Q ss_pred cEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccccc
Q 036679 81 RLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMK 137 (294)
Q Consensus 81 ~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 137 (294)
++|...++.......+...+.|+.++++.++++...+++.... |.|++|++++...
T Consensus 433 ~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 433 HTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 8887777763322255677889999999998877666665443 8999999998664
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.83 E-value=5.4e-06 Score=76.60 Aligned_cols=166 Identities=22% Similarity=0.275 Sum_probs=95.2
Q ss_pred CCCCCccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCCCCeec----cCCCCCccEEEccccCCccc-----cccc
Q 036679 7 VTLSSLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNEDRLAR-----VSIC 76 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c~~l~~-----~~~~ 76 (294)
..+++|+.|+++.+. ++|.++..+...||+|++|.+.+|..+.... ...++.|++|+++.|..+.. +...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 346888889998887 7888888888889999999988887643211 13578899999988875422 2234
Q ss_pred CCcccEEEeeCCCC--------------Cc--c---cccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccccc
Q 036679 77 GPNVRLVDISSLHA--------------PC--G---INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMK 137 (294)
Q Consensus 77 ~~~L~~L~l~~c~~--------------~~--~---~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 137 (294)
+++++.+.+..+.. .. . ..+..|++++.+.+..+..++......+.+|+.|+ ..+..+..
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~ 398 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC 398 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc
Confidence 66666655433320 00 0 12345566666666655544433334455555552 22111110
Q ss_pred ceeecccccccceEEeecccCceeeecc-----CCCccEEEEcCcee
Q 036679 138 IRSIKISSPYLKKLLVRFCNKLYEFKLD-----TPNLSVFDYEGDMV 179 (294)
Q Consensus 138 l~~l~i~~~~L~~L~l~~c~~l~~~~~~-----~p~L~~l~~~g~~~ 179 (294)
....++.|.+..|...+.-.+. +.++..+.+.|+..
T Consensus 399 ------~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 399 ------RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ------cCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 0112777888888765533221 44555666665543
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=2e-05 Score=75.64 Aligned_cols=127 Identities=21% Similarity=0.249 Sum_probs=90.0
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccC-----CcccccccCCcc
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNED-----RLARVSICGPNV 80 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~-----~l~~~~~~~~~L 80 (294)
..||+|++|.+.+..+..+.+..+..++|+|..||+++++ +..+. ++.+++|+.|.+.+-. .+.. -+...+|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLID-LFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHH-HhcccCC
Confidence 4589999999999888777788899999999999999985 33222 3456677776665433 1111 2356789
Q ss_pred cEEEeeCCCCC-cc-------cccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 81 RLVDISSLHAP-CG-------INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 81 ~~L~l~~c~~~-~~-------~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
+.|+++..... .. .....+|+|+.|+.+++.++++.+..++..-|+|+.+..-+|
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 99999876421 11 112357899999999998888877777777778777765543
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.73 E-value=8.9e-07 Score=68.74 Aligned_cols=163 Identities=18% Similarity=0.154 Sum_probs=98.1
Q ss_pred CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC-Ccccccc-cCCcc
Q 036679 5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED-RLARVSI-CGPNV 80 (294)
Q Consensus 5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~-~l~~~~~-~~~~L 80 (294)
++..+.+...|.|+.++++. ++.-+....+||.|+++++. ++.+ .++++++|+.|+++.++ ..-+-.+ ..|-|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 34566777888888887642 22225566778888887753 3333 35677888888887654 1111111 35778
Q ss_pred cEEEeeCCCCCc---ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc---cccceEEee
Q 036679 81 RLVDISSLHAPC---GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---PYLKKLLVR 154 (294)
Q Consensus 81 ~~L~l~~c~~~~---~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~~L~~L~l~ 154 (294)
+.|+++++...- +-.+-.+..|+.|++.++.+.- ++.-+++..+|+.|.+.+..-+ +++-.. .+|+.|.|.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 888888776321 2234455667778888876532 4444667888888888874433 333222 578888887
Q ss_pred cccCceeeeccCCCccEEEEcCc
Q 036679 155 FCNKLYEFKLDTPNLSVFDYEGD 177 (294)
Q Consensus 155 ~c~~l~~~~~~~p~L~~l~~~g~ 177 (294)
+.. ++. --|.+-.+++-|.
T Consensus 182 gnr-l~v---lppel~~l~l~~~ 200 (264)
T KOG0617|consen 182 GNR-LTV---LPPELANLDLVGN 200 (264)
T ss_pred cce-eee---cChhhhhhhhhhh
Confidence 764 222 2344544544443
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=6.1e-05 Score=72.35 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=65.7
Q ss_pred CCccEEEccccCCc-----ccccccCCcccEEEeeCCCCCcc---cccccccccceEEecccccChHHHHHHhcCCCCCc
Q 036679 57 GKLSKFMVRNEDRL-----ARVSICGPNVRLVDISSLHAPCG---INVALCKNLKELKLFKLSITNEWLCNQFSELPFLE 128 (294)
Q Consensus 57 ~~L~~L~l~~c~~l-----~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~ 128 (294)
.+|++|+|++...+ ..+....|+|++|.+++-.+... .-..++|+|..|+++++++++- ..+++..+|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 46777777664322 12233467777777766543211 2234667777777777776652 3455667777
Q ss_pred EEeecccccceeec---ccc-cccceEEeecccCcee---------eeccCCCccEEEEcCcee
Q 036679 129 YLEIFRCMKIRSIK---ISS-PYLKKLLVRFCNKLYE---------FKLDTPNLSVFDYEGDMV 179 (294)
Q Consensus 129 ~L~l~~c~~l~~l~---i~~-~~L~~L~l~~c~~l~~---------~~~~~p~L~~l~~~g~~~ 179 (294)
.|.+.+.+-...-. +.. ++|+.|||+.-..... .....|+|+.++.+|..+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 77666533221111 111 5677777765443321 123367788888777654
No 33
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.59 E-value=1.1e-07 Score=82.74 Aligned_cols=163 Identities=18% Similarity=0.115 Sum_probs=79.8
Q ss_pred cCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---ccccccceE
Q 036679 76 CGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---ISSPYLKKL 151 (294)
Q Consensus 76 ~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i~~~~L~~L 151 (294)
..+++..++++.+.+. .+..++.+..++.++...++++. ++..+.+|.+|..+++.+ ++++.++ +..+.|+++
T Consensus 112 s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhhhhccccceeecCchHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhc
Confidence 3456666666665522 23445566667776666665543 333344566666666665 2333332 223566666
Q ss_pred EeecccCceeeeccCCC---ccEEEEcCcee---eeecCccccceEEEEEEEeccChhHHHHH-HHHHhcCcccceeEEE
Q 036679 152 LVRFCNKLYEFKLDTPN---LSVFDYEGDMV---SFSSNALALSETSLCLDSINVDNQWLVKF-IELLAKLNHCSNVLNL 224 (294)
Q Consensus 152 ~l~~c~~l~~~~~~~p~---L~~l~~~g~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~-~~~l~~l~~l~~LL~~ 224 (294)
+.... .++.++-+.-. |+-+++..+.+ ..+.+++.|.++.++... ..++ .+..+.++++.. |++
T Consensus 189 d~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~-------i~~lpae~~~~L~~l~v-LDL 259 (565)
T KOG0472|consen 189 DCNSN-LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ-------IEMLPAEHLKHLNSLLV-LDL 259 (565)
T ss_pred ccchh-hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH-------HHhhHHHHhccccccee-eec
Confidence 54221 13344433222 33333444433 235566667666552221 1111 223334444444 466
Q ss_pred eeeeeeecchhhhhccCCCCCCCceEEEEEc
Q 036679 225 ECYAAAIIPRELREILSSPLTYENHVCFIIN 255 (294)
Q Consensus 225 ~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~ 255 (294)
..++...+|.+ ...+.+|.+|+++.|
T Consensus 260 RdNklke~Pde-----~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 260 RDNKLKEVPDE-----ICLLRSLERLDLSNN 285 (565)
T ss_pred cccccccCchH-----HHHhhhhhhhcccCC
Confidence 66666666766 334556666666653
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00021 Score=63.86 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=18.4
Q ss_pred CCCcEEeecccccceeecccccccceEEeecc
Q 036679 125 PFLEYLEIFRCMKIRSIKISSPYLKKLLVRFC 156 (294)
Q Consensus 125 ~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c 156 (294)
++|+.|++++|..+.....-..+|++|.++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 46777777777654321111146777777553
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.49 E-value=2.1e-06 Score=66.69 Aligned_cols=142 Identities=16% Similarity=0.156 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcCCCCCe--eccCCCCCccEEEccccCCcccc---cccCCcccEEEeeCCCCC-cccccccccccceEEe
Q 036679 34 CPLIERLKIIDCRGLKS--LEFLNLGKLSKFMVRNEDRLARV---SICGPNVRLVDISSLHAP-CGINVALCKNLKELKL 107 (294)
Q Consensus 34 ~~~Le~L~L~~c~~l~~--l~~~~l~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L 107 (294)
+.++..|.++.+. +.. -++..+.+|+.|++++++ ++.+ ....+.|+.|+++-+... .+..++++|.|+.|++
T Consensus 32 ~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 3456666776653 222 234455677777777664 2222 223566666666655422 3456778888888888
Q ss_pred cccccChHHHHHHhcCCCCCcEEeecccccceeecccc---cccceEEeecccCceeee---ccCCCccEEEEcCcee
Q 036679 108 FKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---PYLKKLLVRFCNKLYEFK---LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 108 ~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~g~~~ 179 (294)
.++++.+..++.-+-....|+-|.+++ +..+.++-.. .+|+.|.+.+...++ ++ .+...|+.++++|+..
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhccccee
Confidence 888776654433222233445555555 2334333222 456666665554332 22 2334677788888765
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.45 E-value=9e-05 Score=47.99 Aligned_cols=57 Identities=28% Similarity=0.342 Sum_probs=31.5
Q ss_pred CcccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 78 PNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 78 ~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
|+|++|++++|.+. .+..+.++++|++|+++++.++.- -+..+.++++|+.|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 34555555555422 123455666777777776665432 1234556677777776664
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.40 E-value=8.9e-05 Score=62.76 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=88.3
Q ss_pred HHHHHhcCCCCCEEEEEcCCC----------CCeeccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCC----
Q 036679 27 IRDIVAGCPLIERLKIIDCRG----------LKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHA---- 90 (294)
Q Consensus 27 l~~~~~~~~~Le~L~L~~c~~----------l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~---- 90 (294)
+..+..-|..|..|..+...+ +-.++++-+.+|+.+.++.|. ++..+...-|.|+++.......
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~ 253 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP 253 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc
Confidence 444555566777777766542 112333445677788888776 4545544556666665443220
Q ss_pred ---C------------------cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee-cccc-cc
Q 036679 91 ---P------------------CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI-KISS-PY 147 (294)
Q Consensus 91 ---~------------------~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l-~i~~-~~ 147 (294)
+ ....+..++.|++++|+++.|+. +.+...-.|.++.|++++.. +..+ .... ++
T Consensus 254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~ 330 (490)
T KOG1259|consen 254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNR-IRTVQNLAELPQ 330 (490)
T ss_pred cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccc-eeeehhhhhccc
Confidence 0 00123456678999999988764 33334446899999999843 4333 2222 68
Q ss_pred cceEEeecccC--ceeeeccCCCccEEEEcCcee
Q 036679 148 LKKLLVRFCNK--LYEFKLDTPNLSVFDYEGDMV 179 (294)
Q Consensus 148 L~~L~l~~c~~--l~~~~~~~p~L~~l~~~g~~~ 179 (294)
|++|++++... +..+....-|.+++.+.++.+
T Consensus 331 L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 331 LQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred ceEeecccchhHhhhhhHhhhcCEeeeehhhhhH
Confidence 88888887642 223334455677777777655
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.38 E-value=1.1e-05 Score=75.48 Aligned_cols=124 Identities=23% Similarity=0.327 Sum_probs=67.5
Q ss_pred CCCCCCCCCccEEEeeecccCh-HHHHHHHhcCCCCCEEE-----------EEcCC-----C-----CCeecc-------
Q 036679 3 PTRNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIERLK-----------IIDCR-----G-----LKSLEF------- 53 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~-~~l~~~~~~~~~Le~L~-----------L~~c~-----~-----l~~l~~------- 53 (294)
|+++..|.+||.|.|++|.+.. .++..+-.. ||.|- +..|. + |...++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~q---Le~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQ---LEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHh---hhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 7788999999999999998753 333333221 22211 11121 1 111111
Q ss_pred -----CCCCCccEEEccccCCcccc--cccCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCC
Q 036679 54 -----LNLGKLSKFMVRNEDRLARV--SICGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSEL 124 (294)
Q Consensus 54 -----~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~ 124 (294)
.-++.|+.|+++.++ +..+ ...++.|++|+|+.+.... .....+|. |..|.+.+|.++. +.. +.++
T Consensus 179 mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~g-ie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRG-IENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhh-HHhh
Confidence 113566777777664 1111 2246778888887776321 12334555 7777777776543 221 3346
Q ss_pred CCCcEEeecc
Q 036679 125 PFLEYLEIFR 134 (294)
Q Consensus 125 ~~L~~L~l~~ 134 (294)
.+|+.||+++
T Consensus 254 ksL~~LDlsy 263 (1096)
T KOG1859|consen 254 KSLYGLDLSY 263 (1096)
T ss_pred hhhhccchhH
Confidence 6777777775
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.0015 Score=58.52 Aligned_cols=134 Identities=18% Similarity=0.227 Sum_probs=84.8
Q ss_pred HhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCccccc-ccCCcccEEEeeCCC-CCcccccccccccceEEec
Q 036679 31 VAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVS-ICGPNVRLVDISSLH-APCGINVALCKNLKELKLF 108 (294)
Q Consensus 31 ~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~c~-~~~~~~~~~~~~L~~L~L~ 108 (294)
+..|+++..|++++| .++.+. .-.++|++|.+++|..+..+. ...++|+.|++++|. .. .-.++|+.|++.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-----sLP~sLe~L~L~ 120 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-----GLPESVRSLEIK 120 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-----ccccccceEEeC
Confidence 456799999999999 677665 222469999999998775543 224689999999984 21 112468888887
Q ss_pred ccccChHHHHHHhcCCCCCcEEeecccccceeeccc---ccccceEEeecccCceeeeccC-CCccEEEEcCc
Q 036679 109 KLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS---SPYLKKLLVRFCNKLYEFKLDT-PNLSVFDYEGD 177 (294)
Q Consensus 109 ~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~---~~~L~~L~l~~c~~l~~~~~~~-p~L~~l~~~g~ 177 (294)
.+.... +.. -.++|+.|.+.+........+. .++|++|.+.+|..+. ++-.. ++|++|.+..+
T Consensus 121 ~n~~~~--L~~---LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDS--IKN---VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCCcc--ccc---CcchHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEEEeccc
Confidence 544322 222 1247888887543321111111 2589999999998653 22112 36777776543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.25 E-value=5.7e-05 Score=48.94 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=33.0
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEcccc
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNE 67 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c 67 (294)
|+|++|++++|.++. .....+.++++|++|+++++ .+..+. +.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESE-ECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 567777877776642 11234566777777777755 333332 345566666666654
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.15 E-value=4e-05 Score=67.02 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=54.8
Q ss_pred cCCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhc
Q 036679 165 DTPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREI 239 (294)
Q Consensus 165 ~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~ 239 (294)
..|+|+.++++++.+ -.|.+.++++++.+. .+.....-...+.++.+|+. |+++.+.+..+..+.
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~------~N~l~~v~~~~f~~ls~L~t-L~L~~N~it~~~~~a--- 341 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT------RNKLEFVSSGMFQGLSGLKT-LSLYDNQITTVAPGA--- 341 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcC------cchHHHHHHHhhhcccccee-eeecCCeeEEEeccc---
Confidence 468899999998866 235566777777662 22222223446778888888 588877776665553
Q ss_pred cCCCCCCCceEEEEEccc
Q 036679 240 LSSPLTYENHVCFIINSE 257 (294)
Q Consensus 240 ~~~~f~~Lk~L~L~~~~~ 257 (294)
..+...|..|.|-.|.+
T Consensus 342 -F~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 342 -FQTLFSLSTLNLLSNPF 358 (498)
T ss_pred -ccccceeeeeehccCcc
Confidence 44667889999977533
No 42
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.02 E-value=1.1e-05 Score=70.55 Aligned_cols=126 Identities=18% Similarity=0.256 Sum_probs=51.2
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC-C-cc-cccccCC
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED-R-LA-RVSICGP 78 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~-~-l~-~~~~~~~ 78 (294)
|...+.++.|+.|+...|.+ +.++.-++++.+|+.|++..+. +..+ .+.+|..|+++.++.+. . +. +.....+
T Consensus 176 ~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~ 252 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLN 252 (565)
T ss_pred CHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence 33334444555555444433 2333334445555555554442 2221 23344444444443332 0 00 0011234
Q ss_pred cccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 79 NVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 79 ~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
++..|++.++... .+..+.-+++|++|+++++.++. ++..+++. +|+.|.+.+
T Consensus 253 ~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLALEG 306 (565)
T ss_pred cceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehhhcC
Confidence 4555555555421 12223334455555555554443 33333444 444444444
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.94 E-value=0.00048 Score=62.28 Aligned_cols=166 Identities=23% Similarity=0.271 Sum_probs=89.3
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcC-CCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC--CcccccccCCccc
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGC-PLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLARVSICGPNVR 81 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~-~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~ 81 (294)
..++.++.|++.++.+++ ++...... ++|++|++++.. ++.+ .+..++.|+.|+++.+. .+.......+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCccccc--Cccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 344667778887776643 23333444 377888877763 3333 45667788888887775 2222222567777
Q ss_pred EEEeeCCCCCc-ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee--cccc-cccceEEeeccc
Q 036679 82 LVDISSLHAPC-GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI--KISS-PYLKKLLVRFCN 157 (294)
Q Consensus 82 ~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l--~i~~-~~L~~L~l~~c~ 157 (294)
.|+++++.+.. +........|+++.+.++.+.. ....+.+...+..+.+.+.. +..+ .+.. ++++.|++.++.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCccee--cchhhhhcccccccccCCce-eeeccchhccccccceecccccc
Confidence 88887776332 2222334457777777774221 12223445555555544322 2221 1111 457777776654
Q ss_pred Cceeee--ccCCCccEEEEcCcee
Q 036679 158 KLYEFK--LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 158 ~l~~~~--~~~p~L~~l~~~g~~~ 179 (294)
++++. ....+++.+++.|...
T Consensus 267 -i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 267 -ISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred -ccccccccccCccCEEeccCccc
Confidence 22332 2335667777766543
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.85 E-value=0.00072 Score=40.56 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR 46 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~ 46 (294)
++|++|++++|.+++ ++..++++++|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 579999999999864 45557899999999999884
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.84 E-value=0.0032 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=15.9
Q ss_pred CCCccEEEeeecccChHHHHHHH
Q 036679 9 LSSLRELGLFKCAANDEAIRDIV 31 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~ 31 (294)
+..++.++|++|.+..++...+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~ 51 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELC 51 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHH
Confidence 56678888888888765554443
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.83 E-value=0.00088 Score=66.24 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=71.6
Q ss_pred CCCCccEEEeeeccc-ChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCCccccc---ccCCccc
Q 036679 8 TLSSLRELGLFKCAA-NDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARVS---ICGPNVR 81 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~-~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~ 81 (294)
.++.|++|-+.++.. -......++..+|.|+.|++++|..+..|+ ++.+-+|++|++++.. +..+. -....|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhh
Confidence 355777777777642 112233456778888888888887766653 5567778888877653 22221 1234666
Q ss_pred EEEeeCCC-C-CcccccccccccceEEeccccc--ChHHHHHHhcCCCCCcEEeecc
Q 036679 82 LVDISSLH-A-PCGINVALCKNLKELKLFKLSI--TNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 82 ~L~l~~c~-~-~~~~~~~~~~~L~~L~L~~~~i--~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
+|++.... . ..+.....+++|++|.+..... +...+.+ +.+..+|+.+.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITI 677 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeec
Confidence 77766554 1 1122334477888888776542 2222222 24556666666544
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.81 E-value=0.00044 Score=68.33 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=55.5
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCCcccc---cccCCcc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARV---SICGPNV 80 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~l~~~---~~~~~~L 80 (294)
+..+|.|++|+|++|.- ...+++.++.+-+|++|++++.. ++.++ +..+..|.+|++.....+..+ .....+|
T Consensus 567 f~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 56789999999998632 25677778888899999998874 44332 345567777877765543322 2235778
Q ss_pred cEEEeeCCC
Q 036679 81 RLVDISSLH 89 (294)
Q Consensus 81 ~~L~l~~c~ 89 (294)
++|.+....
T Consensus 645 r~L~l~~s~ 653 (889)
T KOG4658|consen 645 RVLRLPRSA 653 (889)
T ss_pred cEEEeeccc
Confidence 888776543
No 48
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.00012 Score=61.25 Aligned_cols=107 Identities=21% Similarity=0.327 Sum_probs=73.7
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--Cccccc--ccCCcccEE
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVS--ICGPNVRLV 83 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~--~~~~~L~~L 83 (294)
+.+.|+|+.++|.++|-. ++..+|.||.|.|+-+. +..| .+..|.+|++|.+..+. .+.++. .+.|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 567899999999987643 56789999999999874 3333 24567899999887654 333332 368999999
Q ss_pred EeeCCC--CC--c---ccccccccccceEEecccccChHHHHHHh
Q 036679 84 DISSLH--AP--C---GINVALCKNLKELKLFKLSITNEWLCNQF 121 (294)
Q Consensus 84 ~l~~c~--~~--~---~~~~~~~~~L~~L~L~~~~i~~~~l~~l~ 121 (294)
.|..+. .. . ...+..+|+|++|+ +..++++.+...+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~AL 136 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEEAL 136 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHHHH
Confidence 987654 11 1 13456789999874 5556665555443
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.0017 Score=55.16 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=66.7
Q ss_pred CCCccEEEeeecccCh-HHHHHHHhcCCCCCEEEEEcCC---CCCeeccCCCCCccEEEccccC----CcccccccCCcc
Q 036679 9 LSSLRELGLFKCAAND-EAIRDIVAGCPLIERLKIIDCR---GLKSLEFLNLGKLSKFMVRNED----RLARVSICGPNV 80 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~-~~l~~~~~~~~~Le~L~L~~c~---~l~~l~~~~l~~L~~L~l~~c~----~l~~~~~~~~~L 80 (294)
++.++.|+|.+|.++| +.+..+..++|.|+.|+++.+. -+.++.+ ...+|+.+.+.+-. ......-..|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4566777777777766 6666777777777777776553 1222321 12456666665532 112222344566
Q ss_pred cEEEeeCCCCC---ccc-ccc-cccccceEEecccccCh-HHHHHHhcCCCCCcEEeecccc
Q 036679 81 RLVDISSLHAP---CGI-NVA-LCKNLKELKLFKLSITN-EWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 81 ~~L~l~~c~~~---~~~-~~~-~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
+.|+++.+... ... ... .-+.+++++.-.|...- ....++...||+++.+.+..|+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 66666665311 110 000 11345555555553211 1233445567888888777765
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.61 E-value=0.0033 Score=37.67 Aligned_cols=38 Identities=42% Similarity=0.479 Sum_probs=25.7
Q ss_pred cccceEEecccccChHHHHHHhcCCCCCcEEeeccccccee
Q 036679 100 KNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRS 140 (294)
Q Consensus 100 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~ 140 (294)
++|++|+++++.+++ ++..++++++|+.|++++++ +++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~-i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP-ISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC-CSB
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC-CCC
Confidence 467888888887775 55556778888888888763 444
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.0048 Score=52.51 Aligned_cols=192 Identities=17% Similarity=0.100 Sum_probs=101.5
Q ss_pred cEEEeeCCCCCccc----ccccccccceEEecccccCh-HHHHHHhcCCCCCcEEeecccc---cceeecccccccceEE
Q 036679 81 RLVDISSLHAPCGI----NVALCKNLKELKLFKLSITN-EWLCNQFSELPFLEYLEIFRCM---KIRSIKISSPYLKKLL 152 (294)
Q Consensus 81 ~~L~l~~c~~~~~~----~~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~---~l~~l~i~~~~L~~L~ 152 (294)
+-+.+.+|.++... ....+..++.++|.++.+++ +++..++.+.|+|+.|+++..+ .+.+++.+..+|+.|.
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 34455566543321 12467889999999999887 4577788899999999998632 2333443446888888
Q ss_pred eecccC----ceeeeccCCCccEEEEcCcee-------eeecC-ccccceEEEEEEEeccChhHHHHHHHHHhcCcccce
Q 036679 153 VRFCNK----LYEFKLDTPNLSVFDYEGDMV-------SFSSN-ALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSN 220 (294)
Q Consensus 153 l~~c~~----l~~~~~~~p~L~~l~~~g~~~-------~~~~~-~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~ 220 (294)
+.+... .+...-+.|.++.|+++.+.. ..... .+.+..+.. .. .....|. ..-++-..||++..
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~--~~-c~~~~w~-~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ--LP-CLEQLWL-NKNKLSRIFPNVNS 203 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc--CC-cHHHHHH-HHHhHHhhcccchh
Confidence 876431 223334567777776665422 00000 011222211 10 0011232 23345567888888
Q ss_pred eEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeC
Q 036679 221 VLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCN 285 (294)
Q Consensus 221 LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~ 285 (294)
+ .++.........+ ...-+|+.+--|.|..+ +..+|+ .++. |...|.+..|.+...
T Consensus 204 v-~v~e~PlK~~s~e---k~se~~p~~~~LnL~~~---~idswa-svD~-Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 204 V-FVCEGPLKTESSE---KGSEPFPSLSCLNLGAN---NIDSWA-SVDA-LNGFPQLVDLRVSEN 259 (418)
T ss_pred e-eeecCcccchhhc---ccCCCCCcchhhhhccc---ccccHH-HHHH-HcCCchhheeeccCC
Confidence 5 4433222111111 01234455556777652 223333 4565 666677777666543
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.47 E-value=0.0012 Score=59.79 Aligned_cols=157 Identities=19% Similarity=0.120 Sum_probs=82.8
Q ss_pred cCCCCCEEEEEcCCC--CCeeccCCCC-CccEEEccccCCcccc---cccCCcccEEEeeCCCCCc-ccccccccccceE
Q 036679 33 GCPLIERLKIIDCRG--LKSLEFLNLG-KLSKFMVRNEDRLARV---SICGPNVRLVDISSLHAPC-GINVALCKNLKEL 105 (294)
Q Consensus 33 ~~~~Le~L~L~~c~~--l~~l~~~~l~-~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L 105 (294)
..+.+..|++.+..- +... ..... +|+.|++++.. +..+ ....++|+.|+++.|.... +......++|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccc-cccchhhcccccccccc-hhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 336777777766542 2211 11222 68888887764 2222 2356788888888876332 2222256778888
Q ss_pred EecccccChHHHHHHhcCCCCCcEEeecccccceeecccc--cccceEEeecccCce--eeeccCCCccEEEEcCceeee
Q 036679 106 KLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS--PYLKKLLVRFCNKLY--EFKLDTPNLSVFDYEGDMVSF 181 (294)
Q Consensus 106 ~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~--~~L~~L~l~~c~~l~--~~~~~~p~L~~l~~~g~~~~~ 181 (294)
+++++.+.+ ++.......+|+.|.+++...++.+.... .++..+.+.+..... ......++++++++.++.+..
T Consensus 192 ~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCcccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 888887665 33333344568888877653333222111 344444433322211 222344567788877776521
Q ss_pred ---ecCccccceEEE
Q 036679 182 ---SSNALALSETSL 193 (294)
Q Consensus 182 ---~~~~~~L~~~~i 193 (294)
.....+++.+.+
T Consensus 270 i~~~~~~~~l~~L~~ 284 (394)
T COG4886 270 ISSLGSLTNLRELDL 284 (394)
T ss_pred cccccccCccCEEec
Confidence 223344555554
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.001 Score=55.22 Aligned_cols=38 Identities=34% Similarity=0.412 Sum_probs=19.0
Q ss_pred cccccceEEecccccChH-HHHHHhcCCCCCcEEeecccc
Q 036679 98 LCKNLKELKLFKLSITNE-WLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 98 ~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~ 136 (294)
.+|+|+++.++++.+.+- .+. -+....+|..|++.+|.
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred hCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC
Confidence 446666666666654431 111 12334556666666654
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.27 E-value=0.0053 Score=51.58 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=87.4
Q ss_pred HHhcCCCCCEEEEEcCC-CCCee-----ccCCCCCccEEEccccCCcccc-----------------cccCCcccEEEee
Q 036679 30 IVAGCPLIERLKIIDCR-GLKSL-----EFLNLGKLSKFMVRNEDRLARV-----------------SICGPNVRLVDIS 86 (294)
Q Consensus 30 ~~~~~~~Le~L~L~~c~-~l~~l-----~~~~l~~L~~L~l~~c~~l~~~-----------------~~~~~~L~~L~l~ 86 (294)
..-+||+|+..+|+++- +.+.. .+++-..|++|.+++|. +.++ ..+.|.|+.+...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 35577888888887764 22211 13444677777777763 2221 1245788888777
Q ss_pred CCCCC-cc-----cccccccccceEEecccccChHHHHHH----hcCCCCCcEEeeccccccee-----ec---cccccc
Q 036679 87 SLHAP-CG-----INVALCKNLKELKLFKLSITNEWLCNQ----FSELPFLEYLEIFRCMKIRS-----IK---ISSPYL 148 (294)
Q Consensus 87 ~c~~~-~~-----~~~~~~~~L~~L~L~~~~i~~~~l~~l----~~~~~~L~~L~l~~c~~l~~-----l~---i~~~~L 148 (294)
.+.+- .+ ..+.+-.+|+++.+..+.|..+++..+ +..|.+|+.|++.+.. .+. +. ...+.|
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchh
Confidence 76621 11 123333588999999998877655433 3468899999998743 211 11 112568
Q ss_pred ceEEeecccCcee---------eeccCCCccEEEEcCc
Q 036679 149 KKLLVRFCNKLYE---------FKLDTPNLSVFDYEGD 177 (294)
Q Consensus 149 ~~L~l~~c~~l~~---------~~~~~p~L~~l~~~g~ 177 (294)
+.|.+.+|-.-.. -....|+|..|....+
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 9999988852210 1145688888776654
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.18 E-value=0.005 Score=49.43 Aligned_cols=57 Identities=25% Similarity=0.255 Sum_probs=29.0
Q ss_pred CcccEEEeeCCCCC-cccc-cccccccceEEecccccChH-HHHHHhcCCCCCcEEeeccc
Q 036679 78 PNVRLVDISSLHAP-CGIN-VALCKNLKELKLFKLSITNE-WLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 78 ~~L~~L~l~~c~~~-~~~~-~~~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c 135 (294)
++|.+|.+..+.+. .... -..+|+|+.|.|.++++..- ++.. +..||.|++|.+-+.
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN 123 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence 45555555555421 1111 12456677777777664431 1222 345677777776654
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00045 Score=57.98 Aligned_cols=77 Identities=23% Similarity=0.178 Sum_probs=51.5
Q ss_pred CccEEEccccCCcccccc--cCCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 58 KLSKFMVRNEDRLARVSI--CGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 58 ~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
+.++|+.++| ++.++.+ .+|.|+.|.|+-+.+..-..+..|.+|++|+|..|.|.+-+--+-+.+.|+|+.|+|...
T Consensus 20 ~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCC-CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3455555555 4444433 467788888877765444456788999999999888776322234567899999988763
No 57
>PLN03150 hypothetical protein; Provisional
Probab=95.93 E-value=0.0084 Score=57.57 Aligned_cols=100 Identities=6% Similarity=-0.004 Sum_probs=65.9
Q ss_pred CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccCCcc---cccccCCcccEEEe
Q 036679 11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLA---RVSICGPNVRLVDI 85 (294)
Q Consensus 11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l 85 (294)
.++.|+|+++.+.. .++..+..+++|+.|+|+++.--..+ .+..+++|+.|+++++.--. .....+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 37889999988754 33445788999999999987532222 25678899999999886221 11225689999999
Q ss_pred eCCCCC--ccccccc-ccccceEEecccc
Q 036679 86 SSLHAP--CGINVAL-CKNLKELKLFKLS 111 (294)
Q Consensus 86 ~~c~~~--~~~~~~~-~~~L~~L~L~~~~ 111 (294)
++|.+. .+..+.. ..++..+++.++.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 998732 2222222 2345667776653
No 58
>PLN03150 hypothetical protein; Provisional
Probab=95.73 E-value=0.021 Score=54.86 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=41.1
Q ss_pred ccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc--c-ccccceEEee
Q 036679 80 VRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI--S-SPYLKKLLVR 154 (294)
Q Consensus 80 L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i--~-~~~L~~L~l~ 154 (294)
++.|+++++... .+..+..+++|+.|+|+++.+.+. ++..++.+++|+.|+++++.--..++. . .++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 555666655422 223345566666666666665542 444455666666666666432222221 1 1466666666
Q ss_pred cccC
Q 036679 155 FCNK 158 (294)
Q Consensus 155 ~c~~ 158 (294)
++..
T Consensus 499 ~N~l 502 (623)
T PLN03150 499 GNSL 502 (623)
T ss_pred CCcc
Confidence 6553
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.65 E-value=0.0093 Score=47.93 Aligned_cols=70 Identities=27% Similarity=0.298 Sum_probs=51.7
Q ss_pred HhcCccccee--EEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCCCC
Q 036679 212 LAKLNHCSNV--LNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDCDH 289 (294)
Q Consensus 212 l~~l~~l~~L--L~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~~~ 289 (294)
+..||++..| |.++.+.+..+.+++ .+.+++|+.|.|..|+... +.++ +- |..||.|+.|++.+++..|
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~~---l~dl-~p-La~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQE---LGDL-DP-LASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred cccCCCccccceEEecCCcceeeccch----hhhccccceEEecCcchhh---hhhc-ch-hccCCccceeeecCCchhc
Confidence 4567777777 788888777776663 3456789999999865533 3333 32 7899999999999988877
Q ss_pred c
Q 036679 290 E 290 (294)
Q Consensus 290 ~ 290 (294)
+
T Consensus 128 k 128 (233)
T KOG1644|consen 128 K 128 (233)
T ss_pred c
Confidence 6
No 60
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.47 E-value=0.0017 Score=59.69 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=65.9
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC--CcccccccC
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLARVSICG 77 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~--~l~~~~~~~ 77 (294)
||..+..+..|.+|+|+.|+++ .++.-+..|| |+.|-++++. +..+ .+...++|..|+.+.|. .+..-....
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l 188 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL 188 (722)
T ss_pred cchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence 6777788888888888888763 3333344455 6777776653 3322 24445677777777664 121111223
Q ss_pred CcccEEEeeCCC-CCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 78 PNVRLVDISSLH-APCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 78 ~~L~~L~l~~c~-~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
.+|+.|.+..+. ...+..+. +-.|.+|+++.|+++. ++--+.+...|++|.|.+
T Consensus 189 ~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhheeeeecc
Confidence 344555444443 11222222 2235555655555543 333344455566655554
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0045 Score=49.65 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=27.0
Q ss_pred ceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-----ccccccceEEeecccCcee
Q 036679 103 KELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-----ISSPYLKKLLVRFCNKLYE 161 (294)
Q Consensus 103 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-----i~~~~L~~L~l~~c~~l~~ 161 (294)
+.++-+++.|..+++.. +.+++.++.|.+.+|..+.+.. -..++|+.|+|++|+.+++
T Consensus 104 eaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred EEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 34444444444444433 2345555555555554443321 1124555555555555543
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.09 E-value=0.0059 Score=55.70 Aligned_cols=122 Identities=23% Similarity=0.135 Sum_probs=64.3
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccC--CcccccccCCcccEEEe
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNED--RLARVSICGPNVRLVDI 85 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l 85 (294)
+..++.++++.+.+.. ...-+..+.+|+.|++.++.--+..+ +..+++|+.|+++++. .+..+. .++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh-hccchhhhee
Confidence 4455555555554422 12224556667777766653212222 3456677777777654 222221 2344777777
Q ss_pred eCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 86 SSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 86 ~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
.+|.......+..+++|+.+++.++.+.+-.-.. ...+..++.+.+.+
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG 195 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence 7776433333444667777777777655421101 34566777776665
No 63
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.81 E-value=0.00084 Score=61.59 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=58.4
Q ss_pred ccEEEccccC---CcccccccCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 59 LSKFMVRNED---RLARVSICGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 59 L~~L~l~~c~---~l~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
|+.|-+++++ ..+++. ..+.|..|+.+.|... .+..+++..+|+.|.+..+++.+ ++.-+. +-.|..||++
T Consensus 145 Lkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~-~LpLi~lDfS- 219 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELC-SLPLIRLDFS- 219 (722)
T ss_pred ceeEEEecCccccCCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHh-CCceeeeecc-
Confidence 6666666554 112223 4466777777777632 23345566777777777776543 333233 5678888877
Q ss_pred cccceeecccc---cccceEEeeccc
Q 036679 135 CMKIRSIKISS---PYLKKLLVRFCN 157 (294)
Q Consensus 135 c~~l~~l~i~~---~~L~~L~l~~c~ 157 (294)
|+++..+++.. .+|++|.+.+.+
T Consensus 220 cNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 220 CNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred cCceeecchhhhhhhhheeeeeccCC
Confidence 68888888765 577777777765
No 64
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=94.76 E-value=0.036 Score=28.97 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=21.7
Q ss_pred CccEEEeeecccCh-HHHHHHHhcCC
Q 036679 11 SLRELGLFKCAAND-EAIRDIVAGCP 35 (294)
Q Consensus 11 ~Lk~L~L~~~~~~~-~~l~~~~~~~~ 35 (294)
+||+|.|..+.+.+ ..+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 58999999999866 47899999997
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.62 E-value=0.0099 Score=54.21 Aligned_cols=103 Identities=20% Similarity=0.195 Sum_probs=72.0
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC--CCCeeccCCCCCccEEEccccC--CcccccccCCccc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR--GLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVR 81 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~--~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~ 81 (294)
...+.+|..|++.++.+ +.+...+..+++|+.|+++++. ++.. +..++.|+.|++.++. .+..+. ..++|+
T Consensus 91 l~~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~-~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLE-SLKSLK 165 (414)
T ss_pred cccccceeeeeccccch--hhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCc-cchhhh
Confidence 56688999999999987 4444446789999999999875 2332 3345668889888875 222221 257788
Q ss_pred EEEeeCCCCCcccc--cccccccceEEecccccC
Q 036679 82 LVDISSLHAPCGIN--VALCKNLKELKLFKLSIT 113 (294)
Q Consensus 82 ~L~l~~c~~~~~~~--~~~~~~L~~L~L~~~~i~ 113 (294)
.++++++....... ...+.+++.+.+.++.+.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 88888887433222 367788888888887654
No 66
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=93.73 E-value=0.069 Score=27.89 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=20.9
Q ss_pred ccceEEecccccChH-HHHHHhcCCC
Q 036679 101 NLKELKLFKLSITNE-WLCNQFSELP 125 (294)
Q Consensus 101 ~L~~L~L~~~~i~~~-~l~~l~~~~~ 125 (294)
+||+|+|..+.+.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 489999999987665 5889999887
No 67
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.67 E-value=0.0051 Score=58.32 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=29.0
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC--CCCeeccCCCCCccEEEcccc
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR--GLKSLEFLNLGKLSKFMVRNE 67 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~--~l~~l~~~~l~~L~~L~l~~c 67 (294)
++.|+.|+|+.|++++ .. .+..|+.|+.|+|+++. .+-.+...+|. |..|.++++
T Consensus 186 l~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HHHhhhhccchhhhhh--hH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 4566667777766643 22 24556667777776653 12223333333 555555554
No 68
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.43 E-value=0.056 Score=27.46 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=15.9
Q ss_pred CCCccEEEeeecccChHHHHHH
Q 036679 9 LSSLRELGLFKCAANDEAIRDI 30 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~ 30 (294)
+++|++|+|++|.++++++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4789999999999988777654
No 69
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.34 E-value=0.08 Score=27.53 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=17.2
Q ss_pred CCCccEEEeeecc-cChHHHHHHH
Q 036679 9 LSSLRELGLFKCA-ANDEAIRDIV 31 (294)
Q Consensus 9 l~~Lk~L~L~~~~-~~~~~l~~~~ 31 (294)
+++|+.|+|++|. ++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 5778888888884 7887776654
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=0.019 Score=46.19 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=32.9
Q ss_pred cEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCC-----CeeccCCCCCccEEEccccCCccc
Q 036679 13 RELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGL-----KSLEFLNLGKLSKFMVRNEDRLAR 72 (294)
Q Consensus 13 k~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l-----~~l~~~~l~~L~~L~l~~c~~l~~ 72 (294)
+.++=+++.|..+++.. +..++.|+.|.+.+|..+ +.+.- ..++|+.|++++|+.+.+
T Consensus 104 eaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITD 166 (221)
T ss_pred EEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeech
Confidence 34444444444455544 356777777777777643 22221 236777777777775544
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.05 E-value=0.035 Score=46.31 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=57.3
Q ss_pred CcccEEEeeCCCCCcccccccccccceEEeccc--ccChHHHHHHhcCCCCCcEEeecccccceeec-ccc----cccce
Q 036679 78 PNVRLVDISSLHAPCGINVALCKNLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS----PYLKK 150 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~----~~L~~ 150 (294)
..|+.+.+.++.......+-.+|+|++|.++.+ ++.. ++.-+...||+|++|++++. +++.+. +.. ++|+.
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCC-ccccccccchhhhhcchhh
Confidence 344444444444322233446688999999988 4443 36666778899999999983 343321 111 57889
Q ss_pred EEeecccCce------eeeccCCCccEEEE
Q 036679 151 LLVRFCNKLY------EFKLDTPNLSVFDY 174 (294)
Q Consensus 151 L~l~~c~~l~------~~~~~~p~L~~l~~ 174 (294)
|++.+|+-.. .+-.-.|+|+.++.
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccc
Confidence 9999987442 11123566665543
No 72
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=92.33 E-value=0.21 Score=30.79 Aligned_cols=38 Identities=13% Similarity=-0.005 Sum_probs=31.4
Q ss_pred CCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEe
Q 036679 244 LTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIK 283 (294)
Q Consensus 244 f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~ 283 (294)
..+||.+.+.. +.....-..++.++++.+|.||+++|+
T Consensus 13 ~s~Lk~v~~~~--f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKG--FRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEe--eeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 47999999975 445555677899999999999999986
No 73
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=90.42 E-value=0.5 Score=31.36 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=33.1
Q ss_pred CCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCC
Q 036679 245 TYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDC 287 (294)
Q Consensus 245 ~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~ 287 (294)
.+||.+++.. +.....-..++..+|+.+|.||++.|..++.
T Consensus 5 ~~Lk~v~i~~--f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~ 45 (72)
T smart00579 5 SSLEVLEIKG--YRGTEEEKELVKYFLENAPCLKKLTISVETS 45 (72)
T ss_pred heEEEEEEEe--ccCcHHHHHHHHHHHhcchhheEEEEEeecC
Confidence 5688899986 4445556778899999999999999988653
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.29 E-value=0.43 Score=25.27 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=18.6
Q ss_pred CCccEEEeeecccChHHHHHHHh
Q 036679 10 SSLRELGLFKCAANDEAIRDIVA 32 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~ 32 (294)
++|++|+|++|.+.+++...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 68999999999998877665543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.70 E-value=0.26 Score=22.79 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=6.5
Q ss_pred CCccEEEeeeccc
Q 036679 10 SSLRELGLFKCAA 22 (294)
Q Consensus 10 ~~Lk~L~L~~~~~ 22 (294)
++||.|+|++|.+
T Consensus 1 ~~L~~L~l~~n~L 13 (17)
T PF13504_consen 1 PNLRTLDLSNNRL 13 (17)
T ss_dssp TT-SEEEETSS--
T ss_pred CccCEEECCCCCC
Confidence 4566666666654
No 76
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=82.79 E-value=1.4 Score=39.51 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=17.8
Q ss_pred CC-CCCCCCCCccEEEeeecccCh
Q 036679 2 SP-TRNVTLSSLRELGLFKCAAND 24 (294)
Q Consensus 2 ~p-~~~~~l~~Lk~L~L~~~~~~~ 24 (294)
|| .....+++||.|+|++|.|+.
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~Is~ 105 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNNISF 105 (498)
T ss_pred CChhhccchhhhceecccccchhh
Confidence 56 344778999999999998753
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=81.14 E-value=1.2 Score=21.92 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=4.3
Q ss_pred CcEEeeccc
Q 036679 127 LEYLEIFRC 135 (294)
Q Consensus 127 L~~L~l~~c 135 (294)
|+.|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 444444444
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.08 E-value=3.2 Score=30.48 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=19.8
Q ss_pred CCcccEEEeeCCCCCc-ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeec
Q 036679 77 GPNVRLVDISSLHAPC-GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIF 133 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~ 133 (294)
+++++.+.+....... ...+..+++|+.+.+... +..- -...+.++ .|+.+.+.
T Consensus 57 ~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~-~~~i-~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 57 CKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN-ITEI-GSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TT-EEEEETSTT-EE-TTTTTT-TTECEEEETTT--BEE-HTTTTTT--T--EEE-T
T ss_pred ccccccccccccccccccccccccccccccccCcc-ccEE-chhhhcCC-CceEEEEC
Confidence 3356666654322111 123445666777666432 1110 01224455 66666554
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=78.05 E-value=3.9 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=15.8
Q ss_pred cccccccceEEecccccChHHHHHHhcCCCCCcEEeec
Q 036679 96 VALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIF 133 (294)
Q Consensus 96 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~ 133 (294)
+..+++++.+.+... +..- -...+..|+.|+.+++.
T Consensus 54 F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 54 FSNCKSLESITFPNN-LKSI-GDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TT-EEEEETST-T-EE--TTTTTT-TTECEEEET
T ss_pred eeccccccccccccc-cccc-ccccccccccccccccC
Confidence 455556666666442 1110 01234456677766664
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=68.29 E-value=3.6 Score=20.94 Aligned_cols=15 Identities=40% Similarity=0.476 Sum_probs=11.3
Q ss_pred CCCccEEEeeecccC
Q 036679 9 LSSLRELGLFKCAAN 23 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~ 23 (294)
+++|++|+|++|.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 467888888888764
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=68.29 E-value=3.6 Score=20.94 Aligned_cols=15 Identities=40% Similarity=0.476 Sum_probs=11.3
Q ss_pred CCCccEEEeeecccC
Q 036679 9 LSSLRELGLFKCAAN 23 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~ 23 (294)
+++|++|+|++|.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 467888888888764
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=67.57 E-value=0.29 Score=37.21 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=28.8
Q ss_pred CcccEEEeeCCCCC-ccccc-ccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 78 PNVRLVDISSLHAP-CGINV-ALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 78 ~~L~~L~l~~c~~~-~~~~~-~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
..|...+++++.+. ++..+ ..++.++.++++.+.+++ ++.-+...|.|+.|+++..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCc
Confidence 34555566666532 12111 133456666666666554 22224556666666666533
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=64.74 E-value=1.3 Score=33.82 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=15.3
Q ss_pred CcccEEEeeCCCCC-cccccccccccceEEeccccc
Q 036679 78 PNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSI 112 (294)
Q Consensus 78 ~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i 112 (294)
|..+.+++..+... .+..+..++.|+.|+++.+.+
T Consensus 77 ~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 77 PTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred chhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 34444444444321 122234445555555555443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.59 E-value=11 Score=19.50 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=10.0
Q ss_pred CCCccEEEeeeccc
Q 036679 9 LSSLRELGLFKCAA 22 (294)
Q Consensus 9 l~~Lk~L~L~~~~~ 22 (294)
+.+|+.|+|+.|.|
T Consensus 1 L~~L~~L~L~~NkI 14 (26)
T smart00365 1 LTNLEELDLSQNKI 14 (26)
T ss_pred CCccCEEECCCCcc
Confidence 35677778777766
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.32 E-value=8.7 Score=35.95 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=41.7
Q ss_pred CCCCCccEEEeeecccCh-HHHHHHHhcCCCCCEEEEEcCCCCC----ee-ccCCCCCccEEEccccC
Q 036679 7 VTLSSLRELGLFKCAAND-EAIRDIVAGCPLIERLKIIDCRGLK----SL-EFLNLGKLSKFMVRNED 68 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~-~~l~~~~~~~~~Le~L~L~~c~~l~----~l-~~~~l~~L~~L~l~~c~ 68 (294)
-++|.+..++|++|++-. +.+..+....|+|..|+|+++.... .+ .+.+ ..|++|-+.+++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCc
Confidence 357788888898887654 7777788888999999998873221 11 1222 457777777765
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.07 E-value=17 Score=34.08 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=39.2
Q ss_pred CCccEEEccccC-----CcccccccCCcccEEEeeCCC--CCcc---cccccccccceEEecccccCh------HHHHHH
Q 036679 57 GKLSKFMVRNED-----RLARVSICGPNVRLVDISSLH--APCG---INVALCKNLKELKLFKLSITN------EWLCNQ 120 (294)
Q Consensus 57 ~~L~~L~l~~c~-----~l~~~~~~~~~L~~L~l~~c~--~~~~---~~~~~~~~L~~L~L~~~~i~~------~~l~~l 120 (294)
+.+..+.+++++ .+..+...+|.|..|+|+++. .... ..+++ .-|++|-+.++.+.. +.+..+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHHHHH
Confidence 444445555443 222333456777777777763 1111 11222 347788888876433 224444
Q ss_pred hcCCCCCcEEe
Q 036679 121 FSELPFLEYLE 131 (294)
Q Consensus 121 ~~~~~~L~~L~ 131 (294)
-..||.|..||
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 55677777775
No 87
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=27.49 E-value=26 Score=28.86 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=8.8
Q ss_pred ccccceEEecccccCh
Q 036679 99 CKNLKELKLFKLSITN 114 (294)
Q Consensus 99 ~~~L~~L~L~~~~i~~ 114 (294)
|.+++--.|.+|++.+
T Consensus 195 caN~eGA~L~gcNfed 210 (302)
T KOG1665|consen 195 CANAEGASLKGCNFED 210 (302)
T ss_pred ecccccccccCcCCCC
Confidence 4455555566665544
Done!