Query 036679
Match_columns 294
No_of_seqs 314 out of 2128
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:53:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.7 1.3E-15 4.4E-20 133.6 14.0 251 6-286 62-322 (347)
2 4fmz_A Internalin; leucine ric 99.6 2E-15 6.8E-20 132.4 14.4 252 6-286 84-344 (347)
3 2id5_A Lingo-1, leucine rich r 99.6 2.1E-16 7.2E-21 144.7 8.3 261 5-286 51-331 (477)
4 2p1m_B Transport inhibitor res 99.6 1.5E-15 5E-20 142.5 12.3 97 98-194 287-405 (594)
5 3v47_A TOLL-like receptor 5B a 99.6 2.7E-16 9.3E-21 142.9 6.3 103 166-286 298-406 (455)
6 3ogk_B Coronatine-insensitive 99.6 3.8E-15 1.3E-19 139.7 14.1 40 243-287 486-525 (592)
7 3rgz_A Protein brassinosteroid 99.6 3.1E-15 1.1E-19 144.8 12.9 187 6-193 219-425 (768)
8 3ogk_B Coronatine-insensitive 99.6 4.7E-15 1.6E-19 139.1 13.7 180 96-286 289-499 (592)
9 2ast_B S-phase kinase-associat 99.6 2.5E-15 8.5E-20 131.1 9.5 174 3-177 86-282 (336)
10 4fcg_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 130.2 10.2 171 2-177 96-287 (328)
11 1o6v_A Internalin A; bacterial 99.6 4E-14 1.4E-18 129.3 16.4 251 6-287 64-343 (466)
12 3rgz_A Protein brassinosteroid 99.6 4.5E-15 1.5E-19 143.6 10.5 191 2-193 92-325 (768)
13 1o6v_A Internalin A; bacterial 99.6 3.2E-14 1.1E-18 129.9 15.5 56 77-135 176-231 (466)
14 3o6n_A APL1; leucine-rich repe 99.6 1.2E-14 4.2E-19 129.6 11.9 127 7-136 42-176 (390)
15 2p1m_B Transport inhibitor res 99.6 6.6E-15 2.3E-19 138.0 9.0 38 8-45 182-221 (594)
16 4fcg_A Uncharacterized protein 99.5 2.6E-14 9.1E-19 124.6 11.0 172 2-176 119-310 (328)
17 1z7x_W Ribonuclease inhibitor; 99.5 4.1E-14 1.4E-18 128.7 12.6 78 208-288 333-411 (461)
18 2id5_A Lingo-1, leucine rich r 99.5 6.3E-15 2.2E-19 134.8 7.1 240 3-257 73-332 (477)
19 2z80_A TOLL-like receptor 2, v 99.5 1E-13 3.6E-18 121.9 14.2 242 2-257 46-313 (353)
20 3v47_A TOLL-like receptor 5B a 99.5 8.1E-15 2.8E-19 133.2 7.0 126 10-136 30-165 (455)
21 3vq2_A TLR4, TOLL-like recepto 99.5 8.2E-15 2.8E-19 137.9 7.0 234 6-255 303-555 (606)
22 3oja_B Anopheles plasmodium-re 99.5 2.2E-14 7.6E-19 135.0 10.0 126 7-135 48-181 (597)
23 4ecn_A Leucine-rich repeat pro 99.5 2.2E-14 7.6E-19 139.6 10.0 172 2-178 440-655 (876)
24 4eco_A Uncharacterized protein 99.5 4.9E-15 1.7E-19 140.4 4.1 173 2-178 198-413 (636)
25 1z7x_W Ribonuclease inhibitor; 99.5 8.3E-14 2.8E-18 126.6 11.8 147 77-227 112-294 (461)
26 3j0a_A TOLL-like receptor 5; m 99.5 1.1E-13 3.7E-18 135.3 12.5 127 8-135 22-158 (844)
27 4eco_A Uncharacterized protein 99.5 4.9E-15 1.7E-19 140.4 2.7 44 2-46 239-284 (636)
28 3t6q_A CD180 antigen; protein- 99.5 3.9E-14 1.3E-18 133.3 8.4 127 6-135 274-410 (606)
29 3oja_B Anopheles plasmodium-re 99.5 1.3E-13 4.5E-18 129.7 11.9 253 7-287 72-336 (597)
30 3j0a_A TOLL-like receptor 5; m 99.5 3.4E-13 1.2E-17 131.8 14.6 111 3-114 41-162 (844)
31 2z7x_B TOLL-like receptor 1, v 99.5 2.1E-12 7.3E-17 119.2 19.1 126 2-136 15-149 (520)
32 3t6q_A CD180 antigen; protein- 99.5 5.4E-15 1.8E-19 139.2 1.6 133 2-135 293-435 (606)
33 1xku_A Decorin; proteoglycan, 99.5 4.3E-14 1.5E-18 123.2 6.6 258 10-284 52-328 (330)
34 4ecn_A Leucine-rich repeat pro 99.5 1.4E-14 4.8E-19 140.9 3.7 131 2-135 481-629 (876)
35 3bz5_A Internalin-J, INLJ; leu 99.5 2.3E-13 7.9E-18 123.9 11.3 177 6-193 38-219 (457)
36 3vq2_A TLR4, TOLL-like recepto 99.5 9.6E-14 3.3E-18 130.6 8.6 255 6-286 281-556 (606)
37 2ft3_A Biglycan; proteoglycan, 99.4 5.2E-14 1.8E-18 122.8 4.6 259 9-285 53-330 (332)
38 3o6n_A APL1; leucine-rich repe 99.4 1.4E-13 4.9E-18 122.6 6.3 122 7-135 66-196 (390)
39 3bz5_A Internalin-J, INLJ; leu 99.4 6.7E-13 2.3E-17 120.9 10.3 141 6-157 102-244 (457)
40 1ogq_A PGIP-2, polygalacturona 99.4 2E-13 6.9E-18 118.2 6.0 169 10-179 50-233 (313)
41 3g06_A SSPH2 (leucine-rich rep 99.4 1.5E-12 5.1E-17 122.6 12.2 100 2-113 55-154 (622)
42 3o53_A Protein LRIM1, AGAP0063 99.4 1.7E-12 5.8E-17 112.5 11.0 204 8-221 32-267 (317)
43 2ca6_A RAN GTPase-activating p 99.4 5.3E-13 1.8E-17 118.8 7.9 229 6-261 28-319 (386)
44 3oja_A Leucine-rich immune mol 99.4 6.6E-13 2.3E-17 121.9 8.5 231 8-282 32-269 (487)
45 1ziw_A TOLL-like receptor 3; i 99.4 4.1E-13 1.4E-17 128.0 7.0 64 213-286 557-620 (680)
46 2z63_A TOLL-like receptor 4, v 99.4 3E-12 1E-16 119.3 12.5 169 2-177 22-210 (570)
47 2z63_A TOLL-like receptor 4, v 99.4 3.9E-13 1.3E-17 125.3 6.4 236 3-255 275-528 (570)
48 1h6u_A Internalin H; cell adhe 99.4 6.4E-12 2.2E-16 108.5 13.5 175 9-193 40-224 (308)
49 3g06_A SSPH2 (leucine-rich rep 99.4 3.9E-12 1.3E-16 119.8 11.9 217 8-257 79-296 (622)
50 2z66_A Variable lymphocyte rec 99.3 2.4E-12 8.1E-17 110.8 9.5 214 9-257 27-260 (306)
51 1xku_A Decorin; proteoglycan, 99.3 1.2E-12 4E-17 114.0 7.6 256 10-288 31-306 (330)
52 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 6.4E-12 2.2E-16 117.2 13.1 126 2-136 46-180 (562)
53 2z81_A CD282 antigen, TOLL-lik 99.3 5.2E-12 1.8E-16 117.3 12.4 216 2-225 20-259 (549)
54 3zyi_A Leucine-rich repeat-con 99.3 3.4E-12 1.2E-16 116.0 10.8 167 77-256 122-301 (452)
55 3zyj_A Leucine-rich repeat-con 99.3 3.9E-12 1.3E-16 115.2 10.7 40 212-256 251-290 (440)
56 2z7x_B TOLL-like receptor 1, v 99.3 4.3E-11 1.5E-15 110.5 17.9 257 7-277 217-500 (520)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 4.4E-12 1.5E-16 118.3 10.8 104 4-110 70-179 (562)
58 1ziw_A TOLL-like receptor 3; i 99.3 1.4E-12 4.7E-17 124.4 7.5 270 3-286 289-595 (680)
59 2z81_A CD282 antigen, TOLL-lik 99.3 1.4E-11 4.9E-16 114.3 13.8 38 9-46 222-262 (549)
60 1ozn_A Reticulon 4 receptor; N 99.3 8E-12 2.7E-16 106.4 11.1 182 9-194 31-233 (285)
61 1ozn_A Reticulon 4 receptor; N 99.3 7.5E-12 2.6E-16 106.6 10.7 172 4-179 50-237 (285)
62 2xwt_C Thyrotropin receptor; s 99.3 9.6E-12 3.3E-16 103.2 10.9 168 9-179 30-217 (239)
63 3oja_A Leucine-rich immune mol 99.3 3E-12 1E-16 117.5 8.6 205 3-221 51-267 (487)
64 2z66_A Variable lymphocyte rec 99.3 4.7E-12 1.6E-16 109.0 8.9 190 2-194 43-256 (306)
65 1h6u_A Internalin H; cell adhe 99.3 3.1E-11 1.1E-15 104.1 13.9 166 5-179 58-229 (308)
66 1jl5_A Outer protein YOPM; leu 99.3 1.5E-11 5.3E-16 111.8 12.2 158 10-179 131-309 (454)
67 3zyi_A Leucine-rich repeat-con 99.3 6.6E-12 2.3E-16 114.1 9.6 184 3-194 92-298 (452)
68 1jl5_A Outer protein YOPM; leu 99.3 2.7E-11 9.1E-16 110.2 12.9 77 35-113 131-208 (454)
69 3o53_A Protein LRIM1, AGAP0063 99.3 6.1E-13 2.1E-17 115.3 2.0 230 25-283 24-270 (317)
70 1ogq_A PGIP-2, polygalacturona 99.3 6.2E-12 2.1E-16 108.8 8.1 189 2-194 68-276 (313)
71 3zyj_A Leucine-rich repeat-con 99.3 1.9E-11 6.6E-16 110.6 11.4 183 4-194 82-287 (440)
72 1h6t_A Internalin B; cell adhe 99.3 4.1E-11 1.4E-15 102.5 12.1 162 8-179 44-212 (291)
73 2ast_B S-phase kinase-associat 99.3 3.4E-12 1.2E-16 111.2 5.0 150 5-156 113-282 (336)
74 2ft3_A Biglycan; proteoglycan, 99.2 2.6E-12 8.7E-17 112.0 3.5 254 10-288 33-307 (332)
75 2z62_A TOLL-like receptor 4, v 99.2 3.2E-11 1.1E-15 102.2 9.8 180 10-193 28-231 (276)
76 4ezg_A Putative uncharacterize 99.2 1.1E-10 3.9E-15 93.9 12.1 142 34-179 43-193 (197)
77 2ca6_A RAN GTPase-activating p 99.2 8.9E-12 3.1E-16 110.8 6.0 246 16-288 10-316 (386)
78 1wwl_A Monocyte differentiatio 99.2 2E-11 6.7E-16 105.5 7.9 167 12-179 65-265 (312)
79 2o6q_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 100.9 9.8 123 10-135 37-167 (270)
80 1p9a_G Platelet glycoprotein I 99.2 6.6E-11 2.3E-15 101.2 10.3 179 6-193 6-202 (290)
81 2xwt_C Thyrotropin receptor; s 99.2 4.2E-11 1.4E-15 99.3 8.9 168 4-177 49-236 (239)
82 3rfs_A Internalin B, repeat mo 99.2 7.6E-11 2.6E-15 99.8 10.6 166 7-179 38-217 (272)
83 1wwl_A Monocyte differentiatio 99.2 2.1E-11 7.3E-16 105.3 7.1 183 8-193 93-303 (312)
84 1m9s_A Internalin B; cell inva 99.2 6.1E-11 2.1E-15 111.4 10.3 162 9-179 42-209 (605)
85 4glp_A Monocyte differentiatio 99.2 2.4E-11 8.3E-16 104.8 6.7 183 9-193 90-301 (310)
86 4ezg_A Putative uncharacterize 99.2 7.6E-11 2.6E-15 94.9 8.9 143 7-157 41-192 (197)
87 2z80_A TOLL-like receptor 2, v 99.2 6.9E-10 2.4E-14 97.3 15.5 119 35-157 52-185 (353)
88 3rfs_A Internalin B, repeat mo 99.2 8.4E-11 2.9E-15 99.5 9.2 161 5-175 58-230 (272)
89 4glp_A Monocyte differentiatio 99.2 3.2E-11 1.1E-15 104.0 6.4 210 8-227 62-304 (310)
90 2z62_A TOLL-like receptor 4, v 99.1 9.1E-11 3.1E-15 99.4 8.7 171 4-179 46-236 (276)
91 1h6t_A Internalin B; cell adhe 99.1 2.8E-10 9.7E-15 97.3 11.8 143 6-157 64-211 (291)
92 3goz_A Leucine-rich repeat-con 99.1 4.9E-11 1.7E-15 105.2 6.5 146 9-157 21-207 (362)
93 2ell_A Acidic leucine-rich nuc 99.1 8E-11 2.7E-15 92.2 6.5 129 7-136 21-158 (168)
94 1m9s_A Internalin B; cell inva 99.1 4.2E-10 1.4E-14 105.7 12.4 145 5-158 60-209 (605)
95 2o6q_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 97.6 8.7 149 4-156 55-215 (270)
96 1xeu_A Internalin C; cellular 99.1 4.7E-10 1.6E-14 94.5 10.4 141 7-157 38-183 (263)
97 2je0_A Acidic leucine-rich nuc 99.1 8.6E-11 2.9E-15 90.1 4.1 125 8-133 15-148 (149)
98 3m19_A Variable lymphocyte rec 99.0 4.4E-10 1.5E-14 93.9 8.2 162 11-179 15-191 (251)
99 1p9a_G Platelet glycoprotein I 99.0 3.2E-09 1.1E-13 90.7 10.7 189 32-257 7-207 (290)
100 2o6s_A Variable lymphocyte rec 98.9 8.5E-10 2.9E-14 89.4 5.4 142 9-157 27-176 (208)
101 1xeu_A Internalin C; cellular 98.9 5.3E-09 1.8E-13 88.0 9.7 123 5-136 58-183 (263)
102 3goz_A Leucine-rich repeat-con 98.9 5.4E-09 1.9E-13 92.0 9.6 168 7-178 47-264 (362)
103 3m19_A Variable lymphocyte rec 98.9 2.9E-09 1E-13 88.8 7.0 150 2-157 29-190 (251)
104 3e6j_A Variable lymphocyte rec 98.8 7.6E-09 2.6E-13 85.2 7.5 121 10-134 40-168 (229)
105 2v70_A SLIT-2, SLIT homolog 2 98.8 7E-09 2.4E-13 84.9 7.1 118 36-157 33-164 (220)
106 4g8a_A TOLL-like receptor 4; l 98.8 5.1E-09 1.8E-13 98.4 6.8 123 10-135 52-183 (635)
107 4ay9_X Follicle-stimulating ho 98.8 1.9E-08 6.5E-13 88.1 9.9 173 2-179 24-214 (350)
108 3cvr_A Invasion plasmid antige 98.8 1.9E-08 6.6E-13 93.6 10.1 167 11-193 60-237 (571)
109 4ay9_X Follicle-stimulating ho 98.8 1.4E-08 4.6E-13 89.1 8.6 189 2-193 45-253 (350)
110 2v9t_B SLIT homolog 2 protein 98.8 1.1E-08 3.9E-13 83.6 7.6 56 78-134 80-137 (220)
111 1a9n_A U2A', U2A'; complex (nu 98.8 7.8E-09 2.7E-13 81.4 6.4 127 6-136 15-151 (176)
112 4g8a_A TOLL-like receptor 4; l 98.7 2.4E-08 8.4E-13 93.7 8.0 237 6-257 302-579 (635)
113 3e4g_A ATP synthase subunit S, 98.7 1.5E-08 5.3E-13 79.3 5.4 84 78-161 61-154 (176)
114 2xot_A Amphoterin-induced prot 98.7 2.2E-08 7.4E-13 88.2 6.5 142 10-156 39-199 (361)
115 3cvr_A Invasion plasmid antige 98.6 6.6E-08 2.3E-12 90.0 8.8 51 101-157 121-171 (571)
116 2je0_A Acidic leucine-rich nuc 98.6 8.5E-08 2.9E-12 73.1 7.0 103 33-136 15-124 (149)
117 2o6s_A Variable lymphocyte rec 98.6 3.6E-08 1.2E-12 79.7 5.1 122 5-136 47-176 (208)
118 3e4g_A ATP synthase subunit S, 98.6 3.8E-08 1.3E-12 77.1 4.7 42 99-141 113-155 (176)
119 2ra8_A Uncharacterized protein 98.6 1.1E-07 3.6E-12 83.7 7.8 126 8-134 137-288 (362)
120 2ell_A Acidic leucine-rich nuc 98.6 7E-08 2.4E-12 75.2 5.5 109 2-113 41-160 (168)
121 1ds9_A Outer arm dynein; leuci 98.6 6.2E-09 2.1E-13 83.7 -0.7 108 28-136 41-151 (198)
122 3un9_A NLR family member X1; l 98.5 3.1E-08 1.1E-12 87.5 2.8 146 9-157 71-250 (372)
123 3un9_A NLR family member X1; l 98.5 3.2E-08 1.1E-12 87.5 2.1 167 9-179 46-251 (372)
124 3e6j_A Variable lymphocyte rec 98.4 4.3E-07 1.5E-11 74.5 7.6 109 3-113 57-172 (229)
125 2v9t_B SLIT homolog 2 protein 98.4 4.6E-07 1.6E-11 73.9 7.4 98 78-178 56-163 (220)
126 1dce_A Protein (RAB geranylger 98.4 3.9E-07 1.3E-11 85.0 5.9 101 35-136 441-544 (567)
127 1a9n_A U2A', U2A'; complex (nu 98.3 5.6E-07 1.9E-11 70.6 5.9 103 32-136 16-124 (176)
128 2v70_A SLIT-2, SLIT homolog 2 98.3 5.9E-07 2E-11 73.3 6.1 131 2-136 26-164 (220)
129 1w8a_A SLIT protein; signaling 98.3 5.3E-07 1.8E-11 71.9 5.6 98 36-135 30-136 (192)
130 1ds9_A Outer arm dynein; leuci 98.3 9.2E-09 3.2E-13 82.6 -5.1 122 5-131 43-180 (198)
131 2wfh_A SLIT homolog 2 protein 98.3 1.5E-06 5E-11 69.4 7.0 57 77-134 77-135 (193)
132 2xot_A Amphoterin-induced prot 98.3 7.8E-07 2.7E-11 78.1 5.8 124 8-135 62-199 (361)
133 3sb4_A Hypothetical leucine ri 98.3 4E-06 1.4E-10 72.5 10.1 73 118-193 219-304 (329)
134 2o6r_A Variable lymphocyte rec 98.2 2.8E-06 9.5E-11 66.6 7.4 118 12-136 9-135 (177)
135 3sb4_A Hypothetical leucine ri 98.2 4.4E-06 1.5E-10 72.3 9.1 89 99-192 225-327 (329)
136 1w8a_A SLIT protein; signaling 98.2 9.9E-07 3.4E-11 70.3 3.6 100 11-112 30-138 (192)
137 4b8c_D Glucose-repressible alc 98.1 1.4E-06 4.8E-11 83.6 4.9 56 77-134 246-302 (727)
138 4b8c_D Glucose-repressible alc 98.1 1.9E-06 6.6E-11 82.6 5.3 105 29-136 218-327 (727)
139 1io0_A Tropomodulin; LRR prote 98.1 8.6E-06 2.9E-10 64.5 7.6 111 25-136 26-162 (185)
140 2wfh_A SLIT homolog 2 protein 98.1 1.4E-05 4.8E-10 63.7 8.8 98 79-179 32-138 (193)
141 2o6r_A Variable lymphocyte rec 98.1 1.5E-05 5E-10 62.4 8.6 79 97-178 49-135 (177)
142 1dce_A Protein (RAB geranylger 98.1 1.1E-05 3.7E-10 75.2 8.7 140 29-173 403-566 (567)
143 2ra8_A Uncharacterized protein 98.0 2.7E-05 9.1E-10 68.4 9.5 124 8-136 170-318 (362)
144 4fdw_A Leucine rich hypothetic 97.8 0.00013 4.5E-09 64.9 10.7 120 54-178 223-356 (401)
145 3g39_A Variable lymphocyte rec 97.6 0.00017 5.7E-09 56.0 7.0 11 12-22 11-21 (170)
146 3g39_A Variable lymphocyte rec 97.5 0.0002 6.8E-09 55.6 6.6 56 78-134 30-87 (170)
147 2r9u_A Variable lymphocyte rec 97.5 0.00012 4.2E-09 57.1 5.2 96 12-113 14-118 (174)
148 1io0_A Tropomodulin; LRR prote 97.5 0.00012 4E-09 57.8 5.0 78 55-132 34-128 (185)
149 2r9u_A Variable lymphocyte rec 97.5 0.00032 1.1E-08 54.7 7.3 38 96-134 53-90 (174)
150 2ifg_A High affinity nerve gro 97.3 0.0003 1E-08 61.0 5.7 95 14-113 12-116 (347)
151 2ifg_A High affinity nerve gro 97.2 0.0006 2.1E-08 59.0 6.8 87 2-91 24-116 (347)
152 4fdw_A Leucine rich hypothetic 97.1 0.0063 2.1E-07 54.0 12.0 217 11-254 136-379 (401)
153 3rw6_A Nuclear RNA export fact 96.8 0.0017 5.8E-08 54.2 6.1 16 98-113 194-209 (267)
154 3rw6_A Nuclear RNA export fact 96.4 0.0017 5.8E-08 54.2 3.1 77 30-107 165-258 (267)
155 4fs7_A Uncharacterized protein 95.6 0.091 3.1E-06 46.1 10.7 14 96-109 249-262 (394)
156 1pgv_A TMD-1, tropomodulin TMD 95.6 0.036 1.2E-06 43.9 7.2 21 25-45 31-51 (197)
157 4gt6_A Cell surface protein; l 94.3 0.17 5.9E-06 44.3 8.7 96 31-134 261-366 (394)
158 1pgv_A TMD-1, tropomodulin TMD 94.3 0.089 3E-06 41.6 6.1 80 56-135 40-136 (197)
159 4fs7_A Uncharacterized protein 93.2 0.21 7.2E-06 43.7 7.3 171 7-191 205-393 (394)
160 4gt6_A Cell surface protein; l 92.7 0.24 8.1E-06 43.4 6.9 98 53-156 261-367 (394)
161 4h09_A Hypothetical leucine ri 82.3 2.1 7.1E-05 36.9 5.8 105 31-142 213-325 (379)
162 4h09_A Hypothetical leucine ri 82.1 2 6.7E-05 37.1 5.6 111 55-174 215-340 (379)
163 3rfe_A Platelet glycoprotein I 66.4 1.4 4.7E-05 32.0 0.3 12 56-67 54-65 (130)
164 3rfe_A Platelet glycoprotein I 53.3 12 0.0004 26.9 3.4 34 79-112 32-67 (130)
165 2lz0_A Uncharacterized protein 23.0 50 0.0017 22.3 2.4 35 96-134 16-52 (100)
166 2agh_C Zinc finger protein HRX 21.4 62 0.0021 16.2 1.8 18 264-281 9-26 (31)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=1.3e-15 Score=133.62 Aligned_cols=251 Identities=14% Similarity=0.062 Sum_probs=145.3
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccE
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRL 82 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~ 82 (294)
+..+++|++|++++|.+++-. . +..+++|++|++++|. +..+ .+.++++|++|+++++. .+.. ....++|+.
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDIS--P-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hhhcCCccEEEccCCccccch--h-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 567899999999999886522 1 7889999999999884 3333 25677889999988875 2222 235678888
Q ss_pred EEeeCCC-CCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-cc-ccccceEEeecccCc
Q 036679 83 VDISSLH-APCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-IS-SPYLKKLLVRFCNKL 159 (294)
Q Consensus 83 L~l~~c~-~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~-~~~L~~L~l~~c~~l 159 (294)
|++++|. ......+..+++|++|++.++.+.+.. . +..+++|+.|++++|. ++.+. .. .++|+.+++.++...
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--P-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCch--h-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCC
Confidence 8888885 222233567778888888887765422 1 5667888888887764 33332 12 256777777666432
Q ss_pred eee-eccCCCccEEEEcCceee---eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchh
Q 036679 160 YEF-KLDTPNLSVFDYEGDMVS---FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRE 235 (294)
Q Consensus 160 ~~~-~~~~p~L~~l~~~g~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~ 235 (294)
... ....++|+++++.++... .+...++|+.+.+....+... +.+..+++++. |.++.+....++.
T Consensus 213 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~-L~l~~n~l~~~~~- 282 (347)
T 4fmz_A 213 DITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--------NAVKDLTKLKM-LNVGSNQISDISV- 282 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--------GGGTTCTTCCE-EECCSSCCCCCGG-
T ss_pred CCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--------hhHhcCCCcCE-EEccCCccCCChh-
Confidence 211 124566777777666541 133445566665522111110 12344555555 3554443333321
Q ss_pred hhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679 236 LREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND 286 (294)
Q Consensus 236 ~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~ 286 (294)
...+++|++|.+..+..... ....+..+|+|++|.+...+
T Consensus 283 -----~~~l~~L~~L~L~~n~l~~~------~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 283 -----LNNLSQLNSLFLNNNQLGNE------DMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -----GGGCTTCSEEECCSSCCCGG------GHHHHHTCTTCSEEECCSSS
T ss_pred -----hcCCCCCCEEECcCCcCCCc------ChhHhhccccCCEEEccCCc
Confidence 23445666666665322111 11124455666666666543
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=2e-15 Score=132.41 Aligned_cols=252 Identities=13% Similarity=0.090 Sum_probs=132.2
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccc--cccCCcccEE
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARV--SICGPNVRLV 83 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L 83 (294)
...+++|++|++++|.+++ ++ .+..+++|++|++++|.--..-.+..+++|++|++++|.....+ ...+++|+.|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 4556777777777776643 11 25667777777777664211112455667777777766533222 1245667777
Q ss_pred EeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCcee
Q 036679 84 DISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLYE 161 (294)
Q Consensus 84 ~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~~ 161 (294)
++++|.......+..+++|++|+++++.+++. .. +..+++|+.|+++++. ++.+. +.. ++|++|++++|... .
T Consensus 161 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~-~ 235 (347)
T 4fmz_A 161 TVTESKVKDVTPIANLTDLYSLSLNYNQIEDI--SP-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKIT-D 235 (347)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC--GG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCC-C
T ss_pred EecCCCcCCchhhccCCCCCEEEccCCccccc--cc-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCccC-C
Confidence 77776533222355667777777777665542 11 4566777777776643 22222 222 56777777766532 2
Q ss_pred ee--ccCCCccEEEEcCcee---eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhh
Q 036679 162 FK--LDTPNLSVFDYEGDMV---SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPREL 236 (294)
Q Consensus 162 ~~--~~~p~L~~l~~~g~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~ 236 (294)
++ ...++|+++++.++.. ..+...++|+.+.+....+... ..+..+++++. |+++.+.....+...
T Consensus 236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~-L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 236 LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--------SVLNNLSQLNS-LFLNNNQLGNEDMEV 306 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSE-EECCSSCCCGGGHHH
T ss_pred CcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--------hhhcCCCCCCE-EECcCCcCCCcChhH
Confidence 22 2456677777766644 1233445566665522111110 12445566666 355544333222221
Q ss_pred hhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679 237 REILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND 286 (294)
Q Consensus 237 ~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~ 286 (294)
...+++|++|.+..+..... .. +..+|.|++|.+...+
T Consensus 307 ----l~~l~~L~~L~L~~n~l~~~------~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 ----IGGLTNLTTLFLSQNHITDI------RP--LASLSKMDSADFANQV 344 (347)
T ss_dssp ----HHTCTTCSEEECCSSSCCCC------GG--GGGCTTCSEESSSCC-
T ss_pred ----hhccccCCEEEccCCccccc------cC--hhhhhccceeehhhhc
Confidence 22356677777765422111 11 5566777777665543
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=144.69 Aligned_cols=261 Identities=18% Similarity=0.099 Sum_probs=136.5
Q ss_pred CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCC--cc-cccccCC
Q 036679 5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDR--LA-RVSICGP 78 (294)
Q Consensus 5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~--l~-~~~~~~~ 78 (294)
.+.++++|++|+|++|.+++. .+..+.++++|++|+++++. +..+. +.++++|++|+++++.- +. .....++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 344455555555555544321 11224455555555555542 22221 23456666666666541 10 1112346
Q ss_pred cccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEE
Q 036679 79 NVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLL 152 (294)
Q Consensus 79 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~ 152 (294)
+|+.|+++++.... +..+..+++|++|+++++.+++. ....+.++++|+.|+++++. +..+... .++|++|+
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceee
Confidence 67777776665321 22455667777777777766542 23345667777777777754 3333221 15788888
Q ss_pred eecccCceeeec---cCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEE
Q 036679 153 VRFCNKLYEFKL---DTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNL 224 (294)
Q Consensus 153 l~~c~~l~~~~~---~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~ 224 (294)
+++|..+..++. ..++|++|++.++.+. .+...++|+.+++....+.... ...+..+++|+. |.+
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~-L~L 279 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE------GSMLHELLRLQE-IQL 279 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC------TTSCTTCTTCCE-EEC
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC------hhhccccccCCE-EEC
Confidence 887776655542 3347777777776541 2334556666666221110000 112344566666 466
Q ss_pred eeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679 225 ECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND 286 (294)
Q Consensus 225 ~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~ 286 (294)
+.+....++.. ....+++|++|.|..+.... +....+..+|.|++|.+...+
T Consensus 280 ~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 280 VGGQLAVVEPY----AFRGLNYLRVLNVSGNQLTT------LEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CSSCCSEECTT----TBTTCTTCCEEECCSSCCSC------CCGGGBSCGGGCCEEECCSSC
T ss_pred CCCccceECHH----HhcCcccCCEEECCCCcCce------eCHhHcCCCcccCEEEccCCC
Confidence 55544444322 13456777777777643311 122345667788888877653
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=1.5e-15 Score=142.51 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=62.4
Q ss_pred cccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee---cccccccceEEeec--------ccCceee----
Q 036679 98 LCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI---KISSPYLKKLLVRF--------CNKLYEF---- 162 (294)
Q Consensus 98 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l---~i~~~~L~~L~l~~--------c~~l~~~---- 162 (294)
.+++|++|+++++.+++..+..++.+|++|+.|++.+|..-..+ ....++|++|++.+ |..+++.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 46789999999988888778888888999999999987221111 11247888898844 3333321
Q ss_pred -eccCCCccEEEEcCcee-----eee-cCccccceEEEE
Q 036679 163 -KLDTPNLSVFDYEGDMV-----SFS-SNALALSETSLC 194 (294)
Q Consensus 163 -~~~~p~L~~l~~~g~~~-----~~~-~~~~~L~~~~i~ 194 (294)
...+|+|+++.+.+..+ ... ..+++|+.+++.
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 12467888886554433 111 135667777773
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.62 E-value=2.7e-16 Score=142.91 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=56.0
Q ss_pred CCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeec-chhhhhc
Q 036679 166 TPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAII-PRELREI 239 (294)
Q Consensus 166 ~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~-p~~~~~~ 239 (294)
.++|++|+++++.+. .+...++|+.+.+....+... ....++.+++|+. |+++.+....+ |..
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~---- 366 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI------DSRMFENLDKLEV-LDLSYNHIRALGDQS---- 366 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CGGGGTTCTTCCE-EECCSSCCCEECTTT----
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc------ChhHhcCcccCCE-EECCCCcccccChhh----
Confidence 456777777666441 223445566665522111000 0123455666666 46665555444 333
Q ss_pred cCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679 240 LSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND 286 (294)
Q Consensus 240 ~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~ 286 (294)
...+++|++|.+..|.... +....+..+|.|++|.+...+
T Consensus 367 -~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 367 -FLGLPNLKELALDTNQLKS------VPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -TTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSC
T ss_pred -ccccccccEEECCCCcccc------CCHhHhccCCcccEEEccCCC
Confidence 4456788888887643321 122345777888888887754
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=3.8e-15 Score=139.72 Aligned_cols=40 Identities=5% Similarity=-0.129 Sum_probs=23.3
Q ss_pred CCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCC
Q 036679 243 PLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDC 287 (294)
Q Consensus 243 ~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~ 287 (294)
.+++|++|+|+.+.. .+ ..+..+.+.+|+|+.|.+.....
T Consensus 486 ~~~~L~~L~l~~n~l---~~--~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCF---SE--RAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp CCTTCCEEEEESCCC---BH--HHHHHHHHHCSSCCEEEEESCBC
T ss_pred cCcccCeeeccCCCC---cH--HHHHHHHHhcCccCeeECcCCcC
Confidence 346777777776321 11 12333456677888887776543
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.61 E-value=3.1e-15 Score=144.79 Aligned_cols=187 Identities=16% Similarity=0.076 Sum_probs=106.5
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCccc----ccccCCccc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLAR----VSICGPNVR 81 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~----~~~~~~~L~ 81 (294)
+..+++|++|+|++|.+++. ++..+..+++|++|++++|.-........+++|++|++++|.-... +...+++|+
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCS
T ss_pred cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCC
Confidence 56677777777777766532 3344567777777777776422222222457777887777651111 111247788
Q ss_pred EEEeeCCCC--CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc---c-ccceEEeec
Q 036679 82 LVDISSLHA--PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---P-YLKKLLVRF 155 (294)
Q Consensus 82 ~L~l~~c~~--~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~-~L~~L~l~~ 155 (294)
.|++++|.. ..+..++.+++|++|+++++.+++..-...+.++++|+.|+++++.-...++... + +|++|++++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCS
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccC
Confidence 888888763 2334567778888888888876643222336678888888888764322222111 2 677777776
Q ss_pred ccCceeeec-----cCCCccEEEEcCceee-----eecCccccceEEE
Q 036679 156 CNKLYEFKL-----DTPNLSVFDYEGDMVS-----FSSNALALSETSL 193 (294)
Q Consensus 156 c~~l~~~~~-----~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i 193 (294)
|.....++. ..++|+.+++.++... .+...++|+.+++
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 653322221 1345666666665441 1223445555555
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=4.7e-15 Score=139.10 Aligned_cols=180 Identities=13% Similarity=0.026 Sum_probs=109.7
Q ss_pred cccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee---cccccccceEEeec----------ccCceee
Q 036679 96 VALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI---KISSPYLKKLLVRF----------CNKLYEF 162 (294)
Q Consensus 96 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l---~i~~~~L~~L~l~~----------c~~l~~~ 162 (294)
+..+++|++|+++++.+++..+..++.+|++|+.|++.++..-..+ .-..++|++|++.+ |..++..
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 3456788888888888877777777788899999888743221111 11237899999985 7666532
Q ss_pred -----eccCCCccEEEEcCcee-----eee-cCccccceEEEEEE----EeccChhHHHHHHHHHhcCcccceeEEEe--
Q 036679 163 -----KLDTPNLSVFDYEGDMV-----SFS-SNALALSETSLCLD----SINVDNQWLVKFIELLAKLNHCSNVLNLE-- 225 (294)
Q Consensus 163 -----~~~~p~L~~l~~~g~~~-----~~~-~~~~~L~~~~i~~~----~~~~~~~~~~~~~~~l~~l~~l~~LL~~~-- 225 (294)
...+|+|+++.+....+ ..+ ..+++|+.+++... .+... .....+..++.++++|+.| .++
T Consensus 369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~~~~~~~~~~~~~L~~L-~L~~~ 446 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLDNGVRSLLIGCKKLRRF-AFYLR 446 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCHHHHHHHHHHCTTCCEE-EEECC
T ss_pred HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHHHHHHHHHHhCCCCCEE-EEecC
Confidence 23578999998854433 111 23667888887311 11100 0112355667788999996 442
Q ss_pred ee-eeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679 226 CY-AAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND 286 (294)
Q Consensus 226 ~~-~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~ 286 (294)
.. .....+..+ ...+++|++|.+..+.. .+ . .+..+++.||+|++|.|...+
T Consensus 447 ~~~l~~~~~~~~----~~~~~~L~~L~L~~n~l---~~-~-~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 447 QGGLTDLGLSYI----GQYSPNVRWMLLGYVGE---SD-E-GLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp GGGCCHHHHHHH----HHSCTTCCEEEECSCCS---SH-H-HHHHHHTCCTTCCEEEEESCC
T ss_pred CCCccHHHHHHH----HHhCccceEeeccCCCC---CH-H-HHHHHHhcCcccCeeeccCCC
Confidence 21 111122221 12357899999985322 21 1 245568899999999998865
No 9
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=2.5e-15 Score=131.14 Aligned_cols=174 Identities=13% Similarity=0.179 Sum_probs=133.0
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCe---eccCCCCCccEEEccccCCccc-----cc
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKS---LEFLNLGKLSKFMVRNEDRLAR-----VS 74 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~---l~~~~l~~L~~L~l~~c~~l~~-----~~ 74 (294)
+....++++|++|+|++|.+++..++..+..+++|++|++++|. +.. -.++.+++|++|++++|..+.. ..
T Consensus 86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 34466789999999999999877788889999999999999985 321 1245689999999999964442 22
Q ss_pred ccCCcccEEEeeCC-CCCc---cccccccc-ccceEEeccc--ccChHHHHHHhcCCCCCcEEeecccccceeecc---c
Q 036679 75 ICGPNVRLVDISSL-HAPC---GINVALCK-NLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI---S 144 (294)
Q Consensus 75 ~~~~~L~~L~l~~c-~~~~---~~~~~~~~-~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i---~ 144 (294)
..+++|++|++++| .... +..+..++ +|++|+++++ .+++..++..+.++++|+.|++++|..++.... .
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 35789999999999 6542 23456788 9999999999 677777888888899999999999875543221 1
Q ss_pred -ccccceEEeecccCceee----eccCCCccEEEEcCc
Q 036679 145 -SPYLKKLLVRFCNKLYEF----KLDTPNLSVFDYEGD 177 (294)
Q Consensus 145 -~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~g~ 177 (294)
.++|++|++++|..+... -..+|+|++|++.|+
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 278999999999755432 125788888888876
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=3.5e-15 Score=130.22 Aligned_cols=171 Identities=21% Similarity=0.295 Sum_probs=78.2
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccCCcccccc----
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARVSI---- 75 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~~l~~~~~---- 75 (294)
+|..+.++++|++|+|++|.++ .++..++.+++|++|++++|. +..+ .+.++++|++|++++|.....+..
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred cChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 3444555555555555555543 222234455555555555543 2222 133445555555555442222110
Q ss_pred --------cCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc--
Q 036679 76 --------CGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS-- 144 (294)
Q Consensus 76 --------~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~-- 144 (294)
..++|+.|++++|.+. .+..+..+++|++|+++++.+++ ++..+..+++|+.|++++|.....++..
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 1445555555555422 12234445555555555555442 2223444555555555555444333211
Q ss_pred -ccccceEEeecccCceeee---ccCCCccEEEEcCc
Q 036679 145 -SPYLKKLLVRFCNKLYEFK---LDTPNLSVFDYEGD 177 (294)
Q Consensus 145 -~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~g~ 177 (294)
.++|++|++++|...+.++ ...++|+.++++++
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 1455555555555444333 13445555555543
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.58 E-value=4e-14 Score=129.26 Aligned_cols=251 Identities=16% Similarity=0.089 Sum_probs=120.9
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--CcccccccCCcccEE
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLV 83 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L 83 (294)
+..+++|++|+|++|.+++-. . +..+++|++|++++|.--....+.++++|++|++++|. .+.. ...+++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 455677777777777665421 1 56677777777776642211124556667777776664 2211 1234566666
Q ss_pred EeeCCCCCccccc---------------------ccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec
Q 036679 84 DISSLHAPCGINV---------------------ALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK 142 (294)
Q Consensus 84 ~l~~c~~~~~~~~---------------------~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~ 142 (294)
++++|.......+ ..+++|++|+++++.+++. . .+..+++|+.|+++++.--....
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--S-VLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGG
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--h-hhccCCCCCEEEecCCccccccc
Confidence 6666542211122 3334444444444443321 1 13344455555554432111111
Q ss_pred cc-ccccceEEeecccCceeee--ccCCCccEEEEcCcee---eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCc
Q 036679 143 IS-SPYLKKLLVRFCNKLYEFK--LDTPNLSVFDYEGDMV---SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLN 216 (294)
Q Consensus 143 i~-~~~L~~L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~ 216 (294)
.. .++|+.|++++|. ++.++ ...++|+.++++++.. ..+...++|+.+.+....+... .. +..++
T Consensus 217 ~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-------~~-~~~l~ 287 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-------SP-LAGLT 287 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-------GG-GTTCT
T ss_pred ccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc-------cc-ccCCC
Confidence 11 1455555555543 22221 2345666666665543 1123344555555521111110 11 34556
Q ss_pred ccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCC
Q 036679 217 HCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDC 287 (294)
Q Consensus 217 ~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~ 287 (294)
+|+. |.++.+....++. ...+++|++|.+..+..... . . +..+|+|++|.+.....
T Consensus 288 ~L~~-L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~---~---~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 288 ALTN-LELNENQLEDISP------ISNLKNLTYLTLYFNNISDI---S---P--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp TCSE-EECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCC---G---G--GGGCTTCCEEECCSSCC
T ss_pred ccCe-EEcCCCcccCchh------hcCCCCCCEEECcCCcCCCc---h---h--hccCccCCEeECCCCcc
Confidence 6666 3555444433332 23456777777776433111 1 1 46778888888876543
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=4.5e-15 Score=143.62 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=118.2
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHH-HHHhcCCCCCEEEEEcCCC--------------CCeec--------------
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIR-DIVAGCPLIERLKIIDCRG--------------LKSLE-------------- 52 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~-~~~~~~~~Le~L~L~~c~~--------------l~~l~-------------- 52 (294)
+|..+.++++|++|+|++|.+++.... ..++.+++|++|++++|.- |+.++
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 467888999999999999988642221 1478899999999988741 12221
Q ss_pred --cCCCCCccEEEccccCCcccc-cccCCcccEEEeeCCCCCc-ccccccccccceEEecccccChHHHHHHhcCCCCCc
Q 036679 53 --FLNLGKLSKFMVRNEDRLARV-SICGPNVRLVDISSLHAPC-GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLE 128 (294)
Q Consensus 53 --~~~l~~L~~L~l~~c~~l~~~-~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~ 128 (294)
+.++++|++|++++|.-.... ...+++|++|++++|.... ...++.+++|++|+++++.+++. ++..+.++++|+
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~ 250 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELK 250 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCC
T ss_pred hhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCC
Confidence 122344444444444310000 1245678888888776321 12267888999999999888764 566678899999
Q ss_pred EEeecccccceeecc-cccccceEEeecccCceeeec----cCCCccEEEEcCceee-----eecCccccceEEE
Q 036679 129 YLEIFRCMKIRSIKI-SSPYLKKLLVRFCNKLYEFKL----DTPNLSVFDYEGDMVS-----FSSNALALSETSL 193 (294)
Q Consensus 129 ~L~l~~c~~l~~l~i-~~~~L~~L~l~~c~~l~~~~~----~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i 193 (294)
.|++++|.-...++. ..++|++|++++|.....++. .+++|+++++.++... .+...++|+.+.+
T Consensus 251 ~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp EEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred EEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence 999998754332222 226788888877763322221 1367777777766541 1234455666655
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.58 E-value=3.2e-14 Score=129.94 Aligned_cols=56 Identities=21% Similarity=0.064 Sum_probs=27.0
Q ss_pred CCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 77 GPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
+++|+.|++++|.......+..+++|++|+++++.+++.. . +..+++|+.|+++++
T Consensus 176 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--P-LGILTNLDELSLNGN 231 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GGGCTTCCEEECCSS
T ss_pred CCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc--c-ccccCCCCEEECCCC
Confidence 3455566665554322223445555555555555544321 1 334555555555553
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.57 E-value=1.2e-14 Score=129.55 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=83.0
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-ccccCCcc
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSICGPNV 80 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L 80 (294)
..++++++|+++++.+.. ....++..+++|++|+++++. +..+ .+.++++|++|+++++. .+.. .....++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchhh-CChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 457889999999887743 223456778999999998874 4433 34567788888888775 1211 11245778
Q ss_pred cEEEeeCCCCCc-c-cccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 81 RLVDISSLHAPC-G-INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 81 ~~L~l~~c~~~~-~-~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
+.|++++|.... + ..+..+++|++|+++++.+++. ....+.++++|+.|+++++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCCCc
Confidence 888888876331 2 2246677888888887776542 22335667788888877643
No 15
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=6.6e-15 Score=138.04 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=28.6
Q ss_pred CCCCccEEEeeecc--cChHHHHHHHhcCCCCCEEEEEcC
Q 036679 8 TLSSLRELGLFKCA--ANDEAIRDIVAGCPLIERLKIIDC 45 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~--~~~~~l~~~~~~~~~Le~L~L~~c 45 (294)
.+++|++|++++|. ++++.+..++..+++|++|++++|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 56678888887774 556777777777888888888877
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.54 E-value=2.6e-14 Score=124.61 Aligned_cols=172 Identities=19% Similarity=0.196 Sum_probs=132.4
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-----------cCCCCCccEEEccccC--
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-----------FLNLGKLSKFMVRNED-- 68 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-----------~~~l~~L~~L~l~~c~-- 68 (294)
+|..+..+++|++|+|++|.++ .++..+..+++|++|++++|..+..+. +.++++|++|++++|.
T Consensus 119 lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 119 LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 6888899999999999999886 445558899999999999987654442 1237899999999985
Q ss_pred CcccccccCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc---
Q 036679 69 RLARVSICGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS--- 144 (294)
Q Consensus 69 ~l~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~--- 144 (294)
.+.......++|+.|++++|... .+..+..+++|++|++++|.+.+. ++..+.++++|+.|++++|.....++..
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 22222235789999999999843 234577889999999999876653 4555778999999999999877766533
Q ss_pred ccccceEEeecccCceeeec---cCCCccEEEEcC
Q 036679 145 SPYLKKLLVRFCNKLYEFKL---DTPNLSVFDYEG 176 (294)
Q Consensus 145 ~~~L~~L~l~~c~~l~~~~~---~~p~L~~l~~~g 176 (294)
.++|++|++++|..++.++- ..++|+.+.+..
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 27999999999998877663 456676666554
No 17
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=4.1e-14 Score=128.66 Aligned_cols=78 Identities=17% Similarity=0.067 Sum_probs=43.8
Q ss_pred HHHHHhcCcccceeEEEeeeeeeec-chhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679 208 FIELLAKLNHCSNVLNLECYAAAII-PRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND 286 (294)
Q Consensus 208 ~~~~l~~l~~l~~LL~~~~~~~~~~-p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~ 286 (294)
+...+..+++++.| +++.+..... +..+........++|++|.+..+... ..+ +..+...+..+|+|++|.+....
T Consensus 333 l~~~l~~~~~L~~L-~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~-~~~-~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 333 FSSVLAQNRFLLEL-QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS-DSS-CSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHCSSCCEE-ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC-HHH-HHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHhhCCCccEE-EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC-hhh-HHHHHHHHHhCCCccEEECCCCC
Confidence 45556667777774 6655433221 22222222223568888888764332 112 22344557778999999887765
Q ss_pred CC
Q 036679 287 CD 288 (294)
Q Consensus 287 ~~ 288 (294)
.+
T Consensus 410 i~ 411 (461)
T 1z7x_W 410 LG 411 (461)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.54 E-value=6.3e-15 Score=134.83 Aligned_cols=240 Identities=18% Similarity=0.152 Sum_probs=169.9
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-cccc
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSIC 76 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~~ 76 (294)
|..+.++++|++|+|++|.++. .....+.++++|++|+++++. +..+ .+.++++|++|+++++. .+.. ....
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred hhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccC
Confidence 6677889999999999998753 122346789999999999985 3332 35678999999999875 1111 1225
Q ss_pred CCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc---cccceE
Q 036679 77 GPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS---PYLKKL 151 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~---~~L~~L 151 (294)
+++|+.|++++|.... ...+..+++|+.|++.++.+.+. ....+..+++|+.|++++|..+..+.... .+|++|
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 6899999999997432 23467889999999999987653 22346789999999999988777765433 589999
Q ss_pred EeecccCceeee----ccCCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeE
Q 036679 152 LVRFCNKLYEFK----LDTPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVL 222 (294)
Q Consensus 152 ~l~~c~~l~~~~----~~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL 222 (294)
++++|. ++.++ ...++|+.|+++++.+ ..+...++|+.+.+.-..+... ....+..+++|+. |
T Consensus 230 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~-L 301 (477)
T 2id5_A 230 SITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV------EPYAFRGLNYLRV-L 301 (477)
T ss_dssp EEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE------CTTTBTTCTTCCE-E
T ss_pred ECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE------CHHHhcCcccCCE-E
Confidence 999986 44444 3578999999998865 1244567788887732211100 0123456677777 5
Q ss_pred EEeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679 223 NLECYAAAIIPRELREILSSPLTYENHVCFIINSE 257 (294)
Q Consensus 223 ~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~ 257 (294)
+++.+....+|+.. ...+++|++|.+..|..
T Consensus 302 ~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 302 NVSGNQLTTLEESV----FHSVGNLETLILDSNPL 332 (477)
T ss_dssp ECCSSCCSCCCGGG----BSCGGGCCEEECCSSCE
T ss_pred ECCCCcCceeCHhH----cCCCcccCEEEccCCCc
Confidence 88877777777652 34578999999987633
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.53 E-value=1e-13 Score=121.89 Aligned_cols=242 Identities=14% Similarity=0.180 Sum_probs=163.8
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cc
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SI 75 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~ 75 (294)
+|..+ .++|++|++++|.+++- ....+..+++|++|+++++. +..+. +.++++|++|+++++. .+..- ..
T Consensus 46 iP~~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 46 IPSGL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp CCTTC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred ccccc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 45433 35899999999988641 12246789999999999884 54442 5677899999999885 22221 12
Q ss_pred cCCcccEEEeeCCCCCc-c--cccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeecccccceeecc---c-ccc
Q 036679 76 CGPNVRLVDISSLHAPC-G--INVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI---S-SPY 147 (294)
Q Consensus 76 ~~~~L~~L~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i---~-~~~ 147 (294)
..++|++|+++++.... + ..+..+++|++|+++++. +++. ....+.++++|+.|+++++. ++.+.. . .++
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQN 199 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSE
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEECCCCC-cCccCHHHHhcccc
Confidence 46899999999987432 2 246788999999999984 4432 23446788999999999865 444321 1 268
Q ss_pred cceEEeecccCceeee----ccCCCccEEEEcCceeee--------ecCccccceEEEEEEEeccChhHHHHHHHHHhcC
Q 036679 148 LKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVSF--------SSNALALSETSLCLDSINVDNQWLVKFIELLAKL 215 (294)
Q Consensus 148 L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~~--------~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l 215 (294)
|++|+++++.. +.++ -..++|+.++++++.... ......++.+.+ ............+.+.+..+
T Consensus 200 L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L--~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 200 VSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF--RNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp EEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE--ESCBCCHHHHHHHHHHHHTC
T ss_pred CCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc--ccccccCcchhhhHHHHhcc
Confidence 99999998873 3332 247899999999876511 112334555555 33333443334556667788
Q ss_pred cccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679 216 NHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSE 257 (294)
Q Consensus 216 ~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~ 257 (294)
++|+. |+++.+....+|.+. ...+++|++|.+..|..
T Consensus 277 ~~L~~-L~Ls~N~l~~i~~~~----~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 277 SGLLE-LEFSRNQLKSVPDGI----FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TTCCE-EECCSSCCCCCCTTT----TTTCTTCCEEECCSSCB
T ss_pred cCCCE-EECCCCCCCccCHHH----HhcCCCCCEEEeeCCCc
Confidence 88888 588877777888763 24678999999998644
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.53 E-value=8.1e-15 Score=133.16 Aligned_cols=126 Identities=11% Similarity=-0.009 Sum_probs=75.2
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCC--ccc-ccccCCcccEE
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDR--LAR-VSICGPNVRLV 83 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~--l~~-~~~~~~~L~~L 83 (294)
++|++|+|++|.+++. .+..++++++|++|+++++.-...+ .+.++++|++|+++++.- +.. .....++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 6778888888776532 1233567778888888777533232 245567777777777651 111 11235677777
Q ss_pred EeeCCCCCc--c--cccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 84 DISSLHAPC--G--INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 84 ~l~~c~~~~--~--~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
++++|.... + ..+..+++|++|+++++.+++......+.++++|+.|+++++.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 777776432 1 1255667777777777766543212235567777777777653
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=8.2e-15 Score=137.92 Aligned_cols=234 Identities=14% Similarity=0.084 Sum_probs=118.6
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--Cc---ccccccCCcc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RL---ARVSICGPNV 80 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l---~~~~~~~~~L 80 (294)
+..+++|++|++++|.+. .++.+ .+++|++|++++|.......+..+++|++|+++++. .. ......+++|
T Consensus 303 l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred ccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 344455555555555542 12222 555666666666544444444555666666666654 11 1111235666
Q ss_pred cEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec--cc-ccccceEEeecc
Q 036679 81 RLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK--IS-SPYLKKLLVRFC 156 (294)
Q Consensus 81 ~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~--i~-~~~L~~L~l~~c 156 (294)
+.|++++|... .+..+..+++|++|+++++.+++......+.++++|+.|++++|......+ +. .++|++|++++|
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 77776666521 123455666777777777665543111345566777777777655322221 11 156777777776
Q ss_pred cCcee-ee---ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeee
Q 036679 157 NKLYE-FK---LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECY 227 (294)
Q Consensus 157 ~~l~~-~~---~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~ 227 (294)
..... ++ ...++|++++++++... .+...++|+.+.+....+... .+..++.+++|+. |+++.+
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~-L~l~~N 531 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL------DSSHYNQLYSLST-LDCSFN 531 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE------EGGGTTTCTTCCE-EECTTS
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc------CHHHccCCCcCCE-EECCCC
Confidence 53321 22 24567777777766441 123445566665522111100 0122344555555 466655
Q ss_pred eeeecchhhhhccCCCCC-CCceEEEEEc
Q 036679 228 AAAIIPRELREILSSPLT-YENHVCFIIN 255 (294)
Q Consensus 228 ~~~~~p~~~~~~~~~~f~-~Lk~L~L~~~ 255 (294)
....+|.+ ...++ +|++|.+..|
T Consensus 532 ~l~~~p~~-----~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 532 RIETSKGI-----LQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CCCCEESC-----GGGSCTTCCEEECCSC
T ss_pred cCcccCHh-----HhhhcccCcEEEccCC
Confidence 55566654 22333 4777777664
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=2.2e-14 Score=134.95 Aligned_cols=126 Identities=11% Similarity=0.093 Sum_probs=74.5
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Ccccc-cccCCcc
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLARV-SICGPNV 80 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~~-~~~~~~L 80 (294)
..+++++.|++.++.++. ....++..+++|+.|+++++. +..+ .+.++++|++|++++|. .+..- ...+++|
T Consensus 48 l~l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 346777888887776642 223446677888888887764 3333 24556777777777664 11111 1245677
Q ss_pred cEEEeeCCCCCc-c-cccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 81 RLVDISSLHAPC-G-INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 81 ~~L~l~~c~~~~-~-~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
+.|++++|.+.. + ..+..+++|++|+++++.+++. .+..+.++++|+.|+++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCC
Confidence 777777776321 1 2245667777777777765542 2233556677777777664
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2.2e-14 Score=139.60 Aligned_cols=172 Identities=10% Similarity=0.085 Sum_probs=113.6
Q ss_pred CCCCCCCCCCccEEEeeecccChH----------------HHHHHHh--cCCCCCEEEEEcCCCCCee--ccCCCCCccE
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDE----------------AIRDIVA--GCPLIERLKIIDCRGLKSL--EFLNLGKLSK 61 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~----------------~l~~~~~--~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~ 61 (294)
+|..+.++++|++|+|++|.++++ .++..++ ++++|++|++++|.-...+ .+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 687888999999999999988752 2444445 8999999999998644333 2566788999
Q ss_pred EEccccCCccc--c----------cccCCcccEEEeeCCCCC-ccc--ccccccccceEEecccccChHHHHHHhcCCCC
Q 036679 62 FMVRNEDRLAR--V----------SICGPNVRLVDISSLHAP-CGI--NVALCKNLKELKLFKLSITNEWLCNQFSELPF 126 (294)
Q Consensus 62 L~l~~c~~l~~--~----------~~~~~~L~~L~l~~c~~~-~~~--~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~ 126 (294)
|+++++..+.. + ....++|+.|++++|.+. .+. .+..+++|+.|+++++.++. ++ .++++++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc--ch-hhcCCCc
Confidence 99988852321 1 113458888888888743 223 46677888888888887762 44 5667788
Q ss_pred CcEEeecccccceeecccc---cc-cceEEeecccCceeeec-----cCCCccEEEEcCce
Q 036679 127 LEYLEIFRCMKIRSIKISS---PY-LKKLLVRFCNKLYEFKL-----DTPNLSVFDYEGDM 178 (294)
Q Consensus 127 L~~L~l~~c~~l~~l~i~~---~~-L~~L~l~~c~~l~~~~~-----~~p~L~~l~~~g~~ 178 (294)
|+.|+++++. ++.++... ++ |+.|++++|.. +.++- ..++|+.|+++++.
T Consensus 597 L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 597 LTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp ESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSC
T ss_pred ceEEECcCCc-cccchHHHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCc
Confidence 8888887754 33333111 45 77777777652 23331 11236666665554
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.51 E-value=4.9e-15 Score=140.42 Aligned_cols=173 Identities=13% Similarity=0.128 Sum_probs=110.1
Q ss_pred CCCCCCCCCCccEEEeeecccChH----------------HHHHHHh--cCCCCCEEEEEcCCCCCee--ccCCCCCccE
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDE----------------AIRDIVA--GCPLIERLKIIDCRGLKSL--EFLNLGKLSK 61 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~----------------~l~~~~~--~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~ 61 (294)
+|..+.++++|++|+|++|.+++. .++..++ ++++|++|++++|.-...+ .+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 577788899999999999988652 1455566 8999999999998643333 3566788999
Q ss_pred EEccccCCccc--cc--c-------cCCcccEEEeeCCCCC-ccc--ccccccccceEEecccccChHHHHHHhcCCCCC
Q 036679 62 FMVRNEDRLAR--VS--I-------CGPNVRLVDISSLHAP-CGI--NVALCKNLKELKLFKLSITNEWLCNQFSELPFL 127 (294)
Q Consensus 62 L~l~~c~~l~~--~~--~-------~~~~L~~L~l~~c~~~-~~~--~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L 127 (294)
|++++|..+.. +. + .+++|+.|++++|.+. .+. .++.+++|++|+++++.+++. ++ .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE-CC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc-hh-hhCCCCCC
Confidence 99988863332 21 1 1378888888888743 223 466777888888888776632 33 45566777
Q ss_pred cEEeecccccceeecccc---cc-cceEEeecccCceeeec-----cCCCccEEEEcCce
Q 036679 128 EYLEIFRCMKIRSIKISS---PY-LKKLLVRFCNKLYEFKL-----DTPNLSVFDYEGDM 178 (294)
Q Consensus 128 ~~L~l~~c~~l~~l~i~~---~~-L~~L~l~~c~~l~~~~~-----~~p~L~~l~~~g~~ 178 (294)
+.|+++++. ++.++... ++ |++|+++++... .++- ..++|+.++++++.
T Consensus 356 ~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 356 ASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp SEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence 777777653 33332211 34 677777666522 3321 12245555555543
No 25
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.51 E-value=8.3e-14 Score=126.62 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=70.8
Q ss_pred CCcccEEEeeCCCCCcc--cc-----cccccccceEEecccccChHH---HHHHhcCCCCCcEEeecccccceeecc---
Q 036679 77 GPNVRLVDISSLHAPCG--IN-----VALCKNLKELKLFKLSITNEW---LCNQFSELPFLEYLEIFRCMKIRSIKI--- 143 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~~~--~~-----~~~~~~L~~L~L~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~~l~~l~i--- 143 (294)
+++|++|++++|..... .. ....++|++|+++++.+++.. +...+..+++|+.|+++++. +.....
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l 190 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVL 190 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHH
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHH
Confidence 45666666666553210 00 111335666666666655432 33445556677777776654 222111
Q ss_pred ------cccccceEEeecccCcee----ee---ccCCCccEEEEcCceeee----------ecCccccceEEEEEEEecc
Q 036679 144 ------SSPYLKKLLVRFCNKLYE----FK---LDTPNLSVFDYEGDMVSF----------SSNALALSETSLCLDSINV 200 (294)
Q Consensus 144 ------~~~~L~~L~l~~c~~l~~----~~---~~~p~L~~l~~~g~~~~~----------~~~~~~L~~~~i~~~~~~~ 200 (294)
..++|++|++++|..-.. +. ...++|++++++++.+.. ....++|+.+.+.... .
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~--l 268 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG--I 268 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC--C
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC--C
Confidence 013677777777642210 11 135677777777765410 0124556666552111 1
Q ss_pred ChhHHHHHHHHHhcCcccceeEEEeee
Q 036679 201 DNQWLVKFIELLAKLNHCSNVLNLECY 227 (294)
Q Consensus 201 ~~~~~~~~~~~l~~l~~l~~LL~~~~~ 227 (294)
.......+.+.+..+++|+.| +++.+
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L-~Ls~n 294 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKEL-SLAGN 294 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEE-ECTTC
T ss_pred CHHHHHHHHHHHhhCCCcceE-ECCCC
Confidence 111122244455566777774 55443
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=135.30 Aligned_cols=127 Identities=15% Similarity=-0.004 Sum_probs=67.6
Q ss_pred CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cc-ccccccCCccc
Q 036679 8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RL-ARVSICGPNVR 81 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l-~~~~~~~~~L~ 81 (294)
-.++|++|+|++|.++.. .+..+.++++|++|++++|.....+ .+.++++|++|+++++. .+ .......++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 356777777777766431 1223566777777777777544333 24455666666666654 11 01112345666
Q ss_pred EEEeeCCCCCc--c--cccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 82 LVDISSLHAPC--G--INVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 82 ~L~l~~c~~~~--~--~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
+|++++|.... + ..+..+++|++|+++++.+++......++++++|+.|+++++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 66666665321 1 124555666666666665543222233455666666666553
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.49 E-value=4.9e-15 Score=140.43 Aligned_cols=44 Identities=11% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCCCCC--CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC
Q 036679 2 SPTRNV--TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR 46 (294)
Q Consensus 2 ~p~~~~--~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~ 46 (294)
+|..+. ++++|++|+|++|.+.. .++..+.++++|++|++++|.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCT
T ss_pred CchhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCC
Confidence 455555 56666666666655432 122334455555555555554
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.49 E-value=3.9e-14 Score=133.30 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=62.4
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCC--eeccCCCCCccEEEccccCCcccc----cccCCc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLK--SLEFLNLGKLSKFMVRNEDRLARV----SICGPN 79 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~--~l~~~~l~~L~~L~l~~c~~l~~~----~~~~~~ 79 (294)
+..+++|++|++++|.++ .++..+..+++|++|++++|.--. ...+.++++|++|+++++.....+ ...+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 455666666666666553 222234556666666666653111 112344556666666655421111 113455
Q ss_pred ccEEEeeCCCCCc----ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 80 VRLVDISSLHAPC----GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 80 L~~L~l~~c~~~~----~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
|+.|++++|.... +..+..+++|++|+++++.+++. .+..+..+++|+.|+++++
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTC
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCC
Confidence 6666665554221 12344555566666655554332 1223444555555555554
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=1.3e-13 Score=129.69 Aligned_cols=253 Identities=14% Similarity=0.097 Sum_probs=176.8
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccCCcc
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICGPNV 80 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~~~L 80 (294)
..+++|++|+|++|.+++. .+..++.+++|++|++++|. +..+. +.++++|++|++++|. .+..- ....++|
T Consensus 72 ~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 5689999999999988642 22246889999999999985 43332 4678999999999985 22211 1356899
Q ss_pred cEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeecccC
Q 036679 81 RLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNK 158 (294)
Q Consensus 81 ~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~~ 158 (294)
+.|++++|.+. .+..+..+++|++|+++++.+++.. ++.+++|+.|+++++ .++.+... ++|+.|+++++..
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n-~l~~l~~~-~~L~~L~ls~n~l 223 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYN-LLSTLAIP-IAVEELDASHNSI 223 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSS-CCSEEECC-TTCSEEECCSSCC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccC-ccccccCC-chhheeeccCCcc
Confidence 99999999743 2235778899999999999887642 456899999999985 35544322 5799999999874
Q ss_pred ceeee-ccCCCccEEEEcCcee---eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecch
Q 036679 159 LYEFK-LDTPNLSVFDYEGDMV---SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPR 234 (294)
Q Consensus 159 l~~~~-~~~p~L~~l~~~g~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~ 234 (294)
+.++ ...++|+.|++.++.. ..+...++|+.+.+....+... .+..+..+++|+. |.++.+....+|.
T Consensus 224 -~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~-L~Ls~N~l~~l~~ 295 (597)
T 3oja_B 224 -NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLER-LYISNNRLVALNL 295 (597)
T ss_dssp -CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCE-EECTTSCCCEEEC
T ss_pred -cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC------CHHHhcCccCCCE-EECCCCCCCCCCc
Confidence 3333 3346899999998866 2344567788887732221110 1223556777777 5777776666765
Q ss_pred hhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCCC
Q 036679 235 ELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCNDC 287 (294)
Q Consensus 235 ~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~~ 287 (294)
. ...+++|++|.|..|... ..+. -+..+|+|++|.+.....
T Consensus 296 ~-----~~~l~~L~~L~Ls~N~l~---~i~~----~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 296 Y-----GQPIPTLKVLDLSHNHLL---HVER----NQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp S-----SSCCTTCCEEECCSSCCC---CCGG----GHHHHTTCSEEECCSSCC
T ss_pred c-----cccCCCCcEEECCCCCCC---ccCc----ccccCCCCCEEECCCCCC
Confidence 5 456789999999975442 2111 135568999999987644
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=3.4e-13 Score=131.79 Aligned_cols=111 Identities=14% Similarity=-0.004 Sum_probs=80.1
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcc----c-cc
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLA----R-VS 74 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~----~-~~ 74 (294)
|..+.++++|++|+|++|.......+..+.++++|++|++++|. +..+ .+.++++|++|++++|.-.. . ..
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 56788899999999999854322223447889999999999885 3333 35678899999999885211 1 02
Q ss_pred ccCCcccEEEeeCCCCC---cccccccccccceEEecccccCh
Q 036679 75 ICGPNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITN 114 (294)
Q Consensus 75 ~~~~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~ 114 (294)
...++|+.|++++|... .+..++.+++|++|+++++.+++
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 24688999999998742 22356788999999999887654
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.48 E-value=2.1e-12 Score=119.24 Aligned_cols=126 Identities=14% Similarity=0.059 Sum_probs=94.4
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCccccc-ccC
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVS-ICG 77 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~~-~~~ 77 (294)
+|..+. ++|++|+|++|.+++. .+..+.++++|++|+++++. +..+ .+.++++|++|+++++. +..+. ...
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l 89 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK-LVKISCHPT 89 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC-CCEEECCCC
T ss_pred cccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc-eeecCcccc
Confidence 565544 8999999999988642 23457889999999999985 4443 35678999999999885 22221 167
Q ss_pred CcccEEEeeCCCCC---cccccccccccceEEecccccChHHHHHHhcCCCCC--cEEeecccc
Q 036679 78 PNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFL--EYLEIFRCM 136 (294)
Q Consensus 78 ~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L--~~L~l~~c~ 136 (294)
++|++|++++|... .+..++.+++|++|+++++.+++.. +..+++| +.|+++++.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECT
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh----ccccccceeeEEEeeccc
Confidence 89999999999743 3356788999999999999887633 4556777 888888764
No 32
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.48 E-value=5.4e-15 Score=139.16 Aligned_cols=133 Identities=18% Similarity=0.138 Sum_probs=55.5
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCC--cc--c-c
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDR--LA--R-V 73 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~--l~--~-~ 73 (294)
+|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.....+ .+.++++|++|+++++.- .. . .
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 344444555555555555544321 1122344555555555554321111 123345555555554431 10 0 0
Q ss_pred cccCCcccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 74 SICGPNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 74 ~~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
...+++|+.|++++|... .+..+..+++|++|+++++.+++......+.++++|+.|++++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 112345555555555421 11223444555555555554433211222344555555555544
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.47 E-value=4.3e-14 Score=123.18 Aligned_cols=258 Identities=13% Similarity=0.059 Sum_probs=147.6
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCccccc-ccCCcccEEEe
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVS-ICGPNVRLVDI 85 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l 85 (294)
++|++|+|++|.+++. ....+..+++|++|+++++. +..+ .+.++++|++|+++++. +..+. ...++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEEC
Confidence 6788888888876531 11235677888888888774 3222 24567788888888764 22221 12367888888
Q ss_pred eCCCCCc--ccccccccccceEEecccccChHH-HHHHhcCCCCCcEEeecccccceeecccc-cccceEEeecccCcee
Q 036679 86 SSLHAPC--GINVALCKNLKELKLFKLSITNEW-LCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLVRFCNKLYE 161 (294)
Q Consensus 86 ~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~-l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l~~c~~l~~ 161 (294)
+++.... +..+..+++|++|+++++.++..+ ....+.++++|+.|+++++. ++.++... ++|++|+++++. ++.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~-l~~ 206 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNK-ITK 206 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSC-CCE
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCc-CCc
Confidence 8776432 123567788888888887765321 23345677888888888754 44433222 678888888776 333
Q ss_pred ee----ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeec
Q 036679 162 FK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAII 232 (294)
Q Consensus 162 ~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~ 232 (294)
+. ...++|++++++++.+. .+...++|+.+.+....+. .++..+..+++++. |.++.+....+
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~-L~l~~N~i~~~ 278 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQV-VYLHNNNISAI 278 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCE-EECCSSCCCCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCE-EECCCCcCCcc
Confidence 32 24578888888877551 2334456776666322111 11122344556666 46666656566
Q ss_pred chhhhhcc--CCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEee
Q 036679 233 PRELREIL--SSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKC 284 (294)
Q Consensus 233 p~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~ 284 (294)
+...+... ...+..++.|.+..|.. ..+.+...-..+++.++.+.+..
T Consensus 279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~----~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 279 GSNDFCPPGYNTKKASYSGVSLFSNPV----QYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSSS----CGGGSCGGGGTTCCCGGGEEC--
T ss_pred ChhhcCCcccccccccccceEeecCcc----cccccCccccccccceeEEEecc
Confidence 55432211 11245677777765322 11122233466677777776654
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=1.4e-14 Score=140.95 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=72.4
Q ss_pred CCCCCC--CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCe--e---------ccCCCCCccEEEccccC
Q 036679 2 SPTRNV--TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKS--L---------EFLNLGKLSKFMVRNED 68 (294)
Q Consensus 2 ~p~~~~--~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~--l---------~~~~l~~L~~L~l~~c~ 68 (294)
+|..+. ++++|++|+|++|.+... ++..+.++++|+.|+++++..+.. + .+..+++|++|+++++.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 677766 788888888877765432 234466777777777777653321 1 11233466666666654
Q ss_pred --Cccc--ccccCCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCC-CcEEeeccc
Q 036679 69 --RLAR--VSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPF-LEYLEIFRC 135 (294)
Q Consensus 69 --~l~~--~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~-L~~L~l~~c 135 (294)
.+.. .....++|+.|++++|.+..-..+..+++|+.|+++++.++ .++..+.++++ |+.|+++++
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSS
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCC
Confidence 1111 11134566666666665321114455566666666666554 13333445555 666666654
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.46 E-value=2.3e-13 Score=123.94 Aligned_cols=177 Identities=13% Similarity=0.139 Sum_probs=122.2
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccc-cCCcccEEE
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSI-CGPNVRLVD 84 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~ 84 (294)
+.++++|++|+++++.+++- + -+..+++|++|++++|. +..+.+..+++|++|+++++. +..+.+ ..++|+.|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNN-ITTLDLSQNTNLTYLACDSNK-LTNLDVTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCc-CCeEccccCCCCCEEECcCCC-CceeecCCCCcCCEEE
Confidence 34578999999999988642 2 36788999999999884 555567788899999998875 222222 467899999
Q ss_pred eeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc-cccceEEeecccCceeee
Q 036679 85 ISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLVRFCNKLYEFK 163 (294)
Q Consensus 85 l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l~~c~~l~~~~ 163 (294)
+++|.... ..++.+++|++|+++++.+++- . ++.+++|+.|+++++..+..+.+.. ++|++|+++++. ++.++
T Consensus 113 L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~l~ 186 (457)
T 3bz5_A 113 CDTNKLTK-LDVSQNPLLTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELD 186 (457)
T ss_dssp CCSSCCSC-CCCTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCCCC
T ss_pred CCCCcCCe-ecCCCCCcCCEEECCCCcccee--c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cceec
Confidence 98887432 2367788899999988887763 1 5678888888888876666554443 678888887764 33343
Q ss_pred c-cCCCccEEEEcCcee--eeecCccccceEEE
Q 036679 164 L-DTPNLSVFDYEGDMV--SFSSNALALSETSL 193 (294)
Q Consensus 164 ~-~~p~L~~l~~~g~~~--~~~~~~~~L~~~~i 193 (294)
+ ..++|+.+++.++.. ..+...++|+.+++
T Consensus 187 l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~L 219 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDC 219 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEEC
T ss_pred cccCCCCCEEECcCCcCCeeccccCCCCCEEEC
Confidence 2 356677777766654 22334455666555
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.46 E-value=9.6e-14 Score=130.60 Aligned_cols=255 Identities=16% Similarity=0.128 Sum_probs=167.3
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccCCcccccc-cCCcccEE
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNEDRLARVSI-CGPNVRLV 83 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L 83 (294)
...+++|+.|+++++.+.. ++ .+..+++|++|++++|.- ..+. + .+++|++|+++++.....+.. ..++|+.|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~--l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY--LE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC--CC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchh--hh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence 4567888888888887743 22 466778899999988864 3332 3 678899999988864444322 56889999
Q ss_pred EeeCCCCCc----ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---c-cccccceEEeec
Q 036679 84 DISSLHAPC----GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---I-SSPYLKKLLVRF 155 (294)
Q Consensus 84 ~l~~c~~~~----~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i-~~~~L~~L~l~~ 155 (294)
++++|.... +..+..+++|++|+++++.+++ ++..+..+++|+.|+++++.-..... + ..++|++|++++
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 998887321 3345678889999999887665 22456678999999999865322222 1 126899999999
Q ss_pred ccCceeee---ccCCCccEEEEcCceee------eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEee
Q 036679 156 CNKLYEFK---LDTPNLSVFDYEGDMVS------FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLEC 226 (294)
Q Consensus 156 c~~l~~~~---~~~p~L~~l~~~g~~~~------~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~ 226 (294)
|......+ ...++|+++++.++... .+...++|+.+++.-..+.. .....++.+++|+. |.++.
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~-L~Ls~ 506 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ------ISWGVFDTLHRLQL-LNMSH 506 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCE-EECCS
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc------cChhhhcccccCCE-EECCC
Confidence 87543232 35688999999888652 23455778888773221110 01223456777777 57776
Q ss_pred eeeeec-chhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCC-CCCeeEEeeCC
Q 036679 227 YAAAII-PRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISP-HAETLSIKCND 286 (294)
Q Consensus 227 ~~~~~~-p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P-~le~l~i~~~~ 286 (294)
+....+ |.. ...+++|++|.+..|... ..+ .. +...| .|++|.+...+
T Consensus 507 N~l~~~~~~~-----~~~l~~L~~L~l~~N~l~---~~p---~~-~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 507 NNLLFLDSSH-----YNQLYSLSTLDCSFNRIE---TSK---GI-LQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SCCSCEEGGG-----TTTCTTCCEEECTTSCCC---CEE---SC-GGGSCTTCCEEECCSCC
T ss_pred CcCCCcCHHH-----ccCCCcCCEEECCCCcCc---ccC---Hh-HhhhcccCcEEEccCCC
Confidence 655444 544 556789999999875332 111 22 55666 59999998864
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.43 E-value=5.2e-14 Score=122.80 Aligned_cols=259 Identities=14% Similarity=0.083 Sum_probs=147.0
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccccc-cCCcccEEE
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVSI-CGPNVRLVD 84 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~ 84 (294)
.++|++|++++|.+.+- .+..+..+++|++|++++|. +..+ .+.++++|++|+++++. +..+.. ..++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEE
T ss_pred CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEE
Confidence 35777777777766431 12235677788888887764 3333 24566778888887764 222211 126788888
Q ss_pred eeCCCCCc--ccccccccccceEEecccccChHH-HHHHhcCCCCCcEEeecccccceeecccc-cccceEEeecccCce
Q 036679 85 ISSLHAPC--GINVALCKNLKELKLFKLSITNEW-LCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLVRFCNKLY 160 (294)
Q Consensus 85 l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~-l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l~~c~~l~ 160 (294)
++++.... +..+..+++|++|+++++.+++.+ ....+..+ +|+.|+++++. ++.++... ++|++|+++++...
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~- 206 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQ- 206 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCC-
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCCcCC-
Confidence 87776321 123567778888888887765321 12223334 77778877754 44433222 57888888877532
Q ss_pred eee----ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeee
Q 036679 161 EFK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAI 231 (294)
Q Consensus 161 ~~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~ 231 (294)
.+. ...++|+.|+++++.+. .+...++|+.+.+....+. .++..+..+++|+. |.++.+....
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~-L~l~~N~l~~ 278 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-------RVPAGLPDLKLLQV-VYLHTNNITK 278 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-------BCCTTGGGCTTCCE-EECCSSCCCB
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-------ecChhhhcCccCCE-EECCCCCCCc
Confidence 222 24578888888877551 2334566777766322211 11222455667777 4777666666
Q ss_pred cchhhhhcc--CCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeC
Q 036679 232 IPRELREIL--SSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCN 285 (294)
Q Consensus 232 ~p~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~ 285 (294)
++....... ...+.+|++|.+..+... ...+.......++.|+.+.+...
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~----~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVP----YWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSC----GGGSCGGGGTTBCCSTTEEC---
T ss_pred cChhHccccccccccccccceEeecCccc----ccccCcccccccchhhhhhcccc
Confidence 655432211 112567888888764221 11222344677888888877653
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=1.4e-13 Score=122.63 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=80.6
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCc
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPN 79 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~ 79 (294)
..+++|++|+|++|.+.+. ....+..+++|++|+++++. +..+ .+.++++|++|+++++. +..+ ....++
T Consensus 66 ~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPK 142 (390)
T ss_dssp HHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCC
Confidence 4578899999988877542 12236778889999988875 3222 24567888888888875 2222 124678
Q ss_pred ccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 80 VRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 80 L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
|++|++++|.... +..+..+++|++|+++++.+++.. +..+++|+.|+++++
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYN 196 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSS
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeecccc
Confidence 8888888886332 233667788888888888776532 344666666666653
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.41 E-value=6.7e-13 Score=120.89 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=94.6
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccc-cCCcccEEE
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSI-CGPNVRLVD 84 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~ 84 (294)
+..+++|++|++++|.+++ ++ ++.+++|++|+++++. +..+++..+++|++|++++|..+..+.+ ..++|+.|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence 5678899999999998754 22 6788899999998874 4445677778888888888764444322 356788888
Q ss_pred eeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc-cccceEEeeccc
Q 036679 85 ISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS-PYLKKLLVRFCN 157 (294)
Q Consensus 85 l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~-~~L~~L~l~~c~ 157 (294)
+++|.... ..+..+++|+.|+++++.+++. -+..+++|+.|+++++. ++.+++.. ++|++|+++++.
T Consensus 177 ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 177 CSFNKITE-LDVSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CCSSCCCC-CCCTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSC
T ss_pred CCCCccce-eccccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCc
Confidence 87776332 1255667777777777766653 14566777777777643 44444332 567777776654
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.40 E-value=2e-13 Score=118.20 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=112.5
Q ss_pred CCccEEEeeecccCh-HHHHHHHhcCCCCCEEEEEcCCCCC-ee--ccCCCCCccEEEccccCCc---ccccccCCcccE
Q 036679 10 SSLRELGLFKCAAND-EAIRDIVAGCPLIERLKIIDCRGLK-SL--EFLNLGKLSKFMVRNEDRL---ARVSICGPNVRL 82 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~-~~l~~~~~~~~~Le~L~L~~c~~l~-~l--~~~~l~~L~~L~l~~c~~l---~~~~~~~~~L~~ 82 (294)
.+++.|+|+++.+++ ..++..+..+++|++|+++++..+. .+ .+.++++|++|+++++.-- .......++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999998864 0234457889999999999643332 12 3567789999999887521 111224678999
Q ss_pred EEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCC-CCcEEeecccccceeecc--cccccceEEeeccc
Q 036679 83 VDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELP-FLEYLEIFRCMKIRSIKI--SSPYLKKLLVRFCN 157 (294)
Q Consensus 83 L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~-~L~~L~l~~c~~l~~l~i--~~~~L~~L~l~~c~ 157 (294)
|++++|.+. .+..+..+++|++|+++++.+++. ++..+..++ .|+.|+++++.--..++. ...+|++|+++++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCc
Confidence 999888732 344567788999999998887643 344466676 899999988653222221 12248888888875
Q ss_pred Cceeee---ccCCCccEEEEcCcee
Q 036679 158 KLYEFK---LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 158 ~l~~~~---~~~p~L~~l~~~g~~~ 179 (294)
.....+ ...++|+.++++++..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCce
Confidence 332222 2456778888777654
No 41
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=1.5e-12 Score=122.63 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=57.4
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCccc
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVR 81 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~ 81 (294)
+|..+. ++|++|+|++|.++. ++. .+++|++|++++|. +..+.- .+++|++|+++++. +..+....++|+
T Consensus 55 lp~~l~--~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~-l~~l~~~l~~L~ 124 (622)
T 3g06_A 55 LPDCLP--AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIFSNP-LTHLPALPSGLC 124 (622)
T ss_dssp CCSCCC--TTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCC-CSCCCC-CCTTCCEEEECSCC-CCCCCCCCTTCC
T ss_pred cChhhC--CCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCc-CCcCCC-CCCCCCEEECcCCc-CCCCCCCCCCcC
Confidence 454443 788888888887742 221 56788888888874 444432 45677777777663 222222445666
Q ss_pred EEEeeCCCCCcccccccccccceEEecccccC
Q 036679 82 LVDISSLHAPCGINVALCKNLKELKLFKLSIT 113 (294)
Q Consensus 82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~ 113 (294)
.|++++|.+.... ..+++|++|++++|.++
T Consensus 125 ~L~L~~N~l~~lp--~~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 125 KLWIFGNQLTSLP--VLPPGLQELSVSDNQLA 154 (622)
T ss_dssp EEECCSSCCSCCC--CCCTTCCEEECCSSCCS
T ss_pred EEECCCCCCCcCC--CCCCCCCEEECcCCcCC
Confidence 6666666522110 12355666666665544
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=1.7e-12 Score=112.53 Aligned_cols=204 Identities=14% Similarity=0.084 Sum_probs=112.4
Q ss_pred CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCccccc-------------
Q 036679 8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVS------------- 74 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~------------- 74 (294)
.+++|++|+|++|.+++. .+..+..+++|++|++++|.--....+..+++|++|++++|. +..+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQELLVGPSIETLHAANN 109 (317)
T ss_dssp TGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE-EEEEEECTTCCEEECCSS
T ss_pred cCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc-cccccCCCCcCEEECCCC
Confidence 356899999999988642 234568889999999988753222335566677777776663 21111
Q ss_pred -------ccCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc-
Q 036679 75 -------ICGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS- 144 (294)
Q Consensus 75 -------~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~- 144 (294)
...++|+.|++++|.... +..+..+++|++|+++++.+++.....+...+++|+.|+++++. ++.+...
T Consensus 110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 188 (317)
T 3o53_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV 188 (317)
T ss_dssp CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC
T ss_pred ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccccc
Confidence 123455555555554221 12344566677777776665543223333456677777776643 3333211
Q ss_pred -ccccceEEeecccCceeee---ccCCCccEEEEcCceeee----ecCccccceEEEEEEEeccChhHH-HHHHHHHhcC
Q 036679 145 -SPYLKKLLVRFCNKLYEFK---LDTPNLSVFDYEGDMVSF----SSNALALSETSLCLDSINVDNQWL-VKFIELLAKL 215 (294)
Q Consensus 145 -~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~g~~~~~----~~~~~~L~~~~i~~~~~~~~~~~~-~~~~~~l~~l 215 (294)
.++|++|+++++. ++.++ ...++|+.++++++.+.. +...++|+.+.+.- +.+. ..+..++..+
T Consensus 189 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~------N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 189 VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG------NGFHCGTLRDFFSKN 261 (317)
T ss_dssp CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT------CCCBHHHHHHHHHTC
T ss_pred ccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC------CCccCcCHHHHHhcc
Confidence 2567777776664 22332 234667777777665411 22334555555521 1111 2345566666
Q ss_pred ccccee
Q 036679 216 NHCSNV 221 (294)
Q Consensus 216 ~~l~~L 221 (294)
+.++.|
T Consensus 262 ~~L~~l 267 (317)
T 3o53_A 262 QRVQTV 267 (317)
T ss_dssp HHHHHH
T ss_pred ccceEE
Confidence 666664
No 43
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=5.3e-13 Score=118.81 Aligned_cols=229 Identities=13% Similarity=0.050 Sum_probs=130.7
Q ss_pred CCCCCCccEEEeeecccChHHHH---HHHhcCCCCCEEEEEcCC--CCC-----ee-----ccCCCCCccEEEccccCCc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIR---DIVAGCPLIERLKIIDCR--GLK-----SL-----EFLNLGKLSKFMVRNEDRL 70 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~---~~~~~~~~Le~L~L~~c~--~l~-----~l-----~~~~l~~L~~L~l~~c~~l 70 (294)
+..+++|++|+|++|.+++.... ..+..+++|++|++++|. .+. .+ .+..+++|++|+++++.--
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34567888888888888765443 335578888888888873 221 01 0245678888888877511
Q ss_pred c----cc---cccCCcccEEEeeCCCCCcc------cccccc---------cccceEEecccccChHHHH---HHhcCCC
Q 036679 71 A----RV---SICGPNVRLVDISSLHAPCG------INVALC---------KNLKELKLFKLSITNEWLC---NQFSELP 125 (294)
Q Consensus 71 ~----~~---~~~~~~L~~L~l~~c~~~~~------~~~~~~---------~~L~~L~L~~~~i~~~~l~---~l~~~~~ 125 (294)
. .+ ...+++|++|++++|.+... ..+..+ ++|++|+++++.+++..++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 1 11 12457788888888764211 112223 6788888888877754444 4455677
Q ss_pred CCcEEeeccccccee-----e---cc-cccccceEEeecccCc----eeee---ccCCCccEEEEcCceeeeecCccccc
Q 036679 126 FLEYLEIFRCMKIRS-----I---KI-SSPYLKKLLVRFCNKL----YEFK---LDTPNLSVFDYEGDMVSFSSNALALS 189 (294)
Q Consensus 126 ~L~~L~l~~c~~l~~-----l---~i-~~~~L~~L~l~~c~~l----~~~~---~~~p~L~~l~~~g~~~~~~~~~~~L~ 189 (294)
+|+.|++++|. ++. + .+ ..++|++|++++|..- ..++ ...|+|+.|+++++.+
T Consensus 188 ~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i---------- 256 (386)
T 2ca6_A 188 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL---------- 256 (386)
T ss_dssp TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC----------
T ss_pred CcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC----------
Confidence 88888888763 321 1 11 1256777777776531 1111 2345666666665432
Q ss_pred eEEEEEEEeccChhHHHHHHHHHhc--CcccceeEEEeeeeeee-----cchhhhhccCCCCCCCceEEEEEccccchh
Q 036679 190 ETSLCLDSINVDNQWLVKFIELLAK--LNHCSNVLNLECYAAAI-----IPRELREILSSPLTYENHVCFIINSEYNTF 261 (294)
Q Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~l~~--l~~l~~LL~~~~~~~~~-----~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~ 261 (294)
.......+.+.+.. +++|+.| .++.+.... +|..+. ..+++|++|.+..|......
T Consensus 257 -----------~~~~~~~l~~~l~~~~~~~L~~L-~L~~n~i~~~g~~~l~~~l~----~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 257 -----------SARGAAAVVDAFSKLENIGLQTL-RLQYNEIELDAVRTLKTVID----EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp -----------CHHHHHHHHHHHHTCSSCCCCEE-ECCSSCCBHHHHHHHHHHHH----HHCTTCCEEECTTSBSCTTS
T ss_pred -----------chhhHHHHHHHHhhccCCCeEEE-ECcCCcCCHHHHHHHHHHHH----hcCCCceEEEccCCcCCcch
Confidence 11111223344433 6777774 666554433 555532 23578888888875443333
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=6.6e-13 Score=121.89 Aligned_cols=231 Identities=14% Similarity=0.111 Sum_probs=144.6
Q ss_pred CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccEEEeeC
Q 036679 8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISS 87 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~ 87 (294)
.+++|++|+|++|.+++. .+..+..+++|++|++++|.--...++.++++|++|++++|. +..+. ..++|+.|++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~-~~~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQELL-VGPSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE-EEEEE-ECTTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc-CCCCC-CCCCcCEEECcC
Confidence 355888888888877542 223467888888888888753223446677888888888874 33332 237888888888
Q ss_pred CCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---c--cccccceEEeecccCceee
Q 036679 88 LHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---I--SSPYLKKLLVRFCNKLYEF 162 (294)
Q Consensus 88 c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i--~~~~L~~L~l~~c~~l~~~ 162 (294)
|.+... ....+++|+.|+++++.+++. .+..++++++|+.|+++++. ++.+. + ..++|++|++++|.. +.+
T Consensus 109 N~l~~~-~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~~ 184 (487)
T 3oja_A 109 NNISRV-SCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI-YDV 184 (487)
T ss_dssp SCCCCE-EECCCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC-CEE
T ss_pred CcCCCC-CccccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcc-ccc
Confidence 874322 123567888888888887653 23345667888888888754 33322 1 126788888888763 333
Q ss_pred e--ccCCCccEEEEcCceeeeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhcc
Q 036679 163 K--LDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREIL 240 (294)
Q Consensus 163 ~--~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~ 240 (294)
+ ...++|+.|+++++.+ +.+ . .-+..+++|+. |+++.+....+|..
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l---------~~~---------~--------~~~~~l~~L~~-L~Ls~N~l~~lp~~----- 232 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSSNKL---------AFM---------G--------PEFQSAAGVTW-ISLRNNKLVLIEKA----- 232 (487)
T ss_dssp ECCCCCTTCCEEECCSSCC---------CEE---------C--------GGGGGGTTCSE-EECTTSCCCEECTT-----
T ss_pred cccccCCCCCEEECCCCCC---------CCC---------C--------HhHcCCCCccE-EEecCCcCcccchh-----
Confidence 2 2356777777776533 110 0 01345677777 57777766677776
Q ss_pred CCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEE
Q 036679 241 SSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSI 282 (294)
Q Consensus 241 ~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i 282 (294)
...+++|++|.+..|... + +.+...+..+|.++++.+
T Consensus 233 l~~l~~L~~L~l~~N~l~---c--~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFH---C--GTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCCCTTCCEEECTTCCBC---H--HHHHHHHTTCHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCc---C--cchHHHHHhCCCCcEEec
Confidence 456789999999764331 0 112233455555555554
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.38 E-value=4.1e-13 Score=128.01 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=33.0
Q ss_pred hcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeCC
Q 036679 213 AKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCND 286 (294)
Q Consensus 213 ~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~~ 286 (294)
+++++|+. |+++.+....+|++. ...+++|++|.|..|...... ...+ -...|.|+++.+.+.+
T Consensus 557 ~~l~~L~~-L~Ls~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~--~~~~---~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 557 KDLFELKI-IDLGLNNLNTLPASV----FNNQVSLKSLNLQKNLITSVE--KKVF---GPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTCTTCCE-EECCSSCCCCCCTTT----TTTCTTCCEEECTTSCCCBCC--HHHH---HHHHTTCSEEECTTCC
T ss_pred ccccCcce-eECCCCCCCcCCHhH----hCCCCCCCEEECCCCcCCccC--hhHh---cccccccCEEEccCCC
Confidence 34444555 355555555555442 234567777777654332111 1111 1245788888887753
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.37 E-value=3e-12 Score=119.34 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=112.7
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----c
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----S 74 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~ 74 (294)
+|..+ .+++++|+|++|.+++-. ...+.++++|++|++++|. +..+. +.++++|++|+++++. +..+ .
T Consensus 22 ip~~l--~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (570)
T 2z63_A 22 IPDNL--PFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (570)
T ss_dssp CCSSS--CSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred cCCCc--cccccEEEccCCccCccC-hhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhh
Confidence 45433 368999999999875421 2246789999999999984 54443 5678899999999885 2221 2
Q ss_pred ccCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----ccc
Q 036679 75 ICGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----PYL 148 (294)
Q Consensus 75 ~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L 148 (294)
..+++|++|+++++.... ...++.+++|++|+++++.+++..++..++++++|+.|+++++. ++.+.... ++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhcc
Confidence 256889999999887432 23477889999999999887653345567889999999999864 44432221 345
Q ss_pred ----ceEEeecccCceeee---ccCCCccEEEEcCc
Q 036679 149 ----KKLLVRFCNKLYEFK---LDTPNLSVFDYEGD 177 (294)
Q Consensus 149 ----~~L~l~~c~~l~~~~---~~~p~L~~l~~~g~ 177 (294)
+.++++++.. +.+. +...+|+.+++.++
T Consensus 176 ~~~~~~L~l~~n~l-~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 176 PLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp TTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESC
T ss_pred chhhhhcccCCCCc-eecCHHHhccCcceeEecccc
Confidence 6677776653 2222 12234666665543
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=125.34 Aligned_cols=236 Identities=16% Similarity=0.153 Sum_probs=122.2
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCccccc-ccCCccc
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVS-ICGPNVR 81 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~ 81 (294)
|..+..+++|++|+++++.+.. ++..+..+ +|++|++++|. +..+....+++|++|+++++....... ..+++|+
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~ 350 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred hhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCC
Confidence 4445556777777777776542 33334455 67777777664 223333455677777777665222111 3456777
Q ss_pred EEEeeCCCCCc----ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---c-cccccceEEe
Q 036679 82 LVDISSLHAPC----GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---I-SSPYLKKLLV 153 (294)
Q Consensus 82 ~L~l~~c~~~~----~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i-~~~~L~~L~l 153 (294)
.|++++|.... +..+..+++|++|+++++.+++. ...+..+++|+.|+++++.-..... . ..++|++|++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE--EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccc--cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 77777765321 12345667777777777665432 1115567777777777654221111 1 1256777777
Q ss_pred ecccCceeee---ccCCCccEEEEcCceee------eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEE
Q 036679 154 RFCNKLYEFK---LDTPNLSVFDYEGDMVS------FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNL 224 (294)
Q Consensus 154 ~~c~~l~~~~---~~~p~L~~l~~~g~~~~------~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~ 224 (294)
++|......+ ...++|+.+++.++... .+...++|+.+++.-..+... ....+..+++|+. |.+
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~-L~l 501 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL------SPTAFNSLSSLQV-LNM 501 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCE-EEC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC------ChhhhhcccCCCE-EeC
Confidence 7765332222 23567777777766441 123344555555521111000 0112334555555 355
Q ss_pred eeeeeeecchhhhhccCCCCCCCceEEEEEc
Q 036679 225 ECYAAAIIPRELREILSSPLTYENHVCFIIN 255 (294)
Q Consensus 225 ~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~ 255 (294)
+.+....+|.+. ...+++|++|.+..|
T Consensus 502 ~~n~l~~~~~~~----~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 502 ASNQLKSVPDGI----FDRLTSLQKIWLHTN 528 (570)
T ss_dssp CSSCCSCCCTTT----TTTCTTCCEEECCSS
T ss_pred CCCcCCCCCHHH----hhcccCCcEEEecCC
Confidence 544444444321 334566666666654
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=6.4e-12 Score=108.49 Aligned_cols=175 Identities=20% Similarity=0.203 Sum_probs=86.3
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEEe
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDI 85 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l 85 (294)
+++|++|+++++.+.+ ++ -+..+++|++|++++|. +..+ .+.++++|++|+++++. .+.. ....++|+.|++
T Consensus 40 l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCcCCCchh-hcCCCCCCEEEC
Confidence 5566666666665543 11 14556666666666653 2211 14455666666666654 1111 113456666666
Q ss_pred eCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCceeee
Q 036679 86 SSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLYEFK 163 (294)
Q Consensus 86 ~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~~~~ 163 (294)
++|.......+..+++|++|+++++.+++. .. +..+++|+.|+++++. ++.+. +.. ++|++|+++++.. +.++
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l-~~~~ 189 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNI--SP-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKI-SDIS 189 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-CCCG
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcC--cc-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCcc-CcCh
Confidence 666532222345556666666666655432 11 4455666666666542 33222 111 4566666655542 2222
Q ss_pred --ccCCCccEEEEcCcee---eeecCccccceEEE
Q 036679 164 --LDTPNLSVFDYEGDMV---SFSSNALALSETSL 193 (294)
Q Consensus 164 --~~~p~L~~l~~~g~~~---~~~~~~~~L~~~~i 193 (294)
...++|+.++++++.+ ..+...++|+.+.+
T Consensus 190 ~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l 224 (308)
T 1h6u_A 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224 (308)
T ss_dssp GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred hhcCCCCCCEEEccCCccCccccccCCCCCCEEEc
Confidence 2345566666655544 11233445555555
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.35 E-value=3.9e-12 Score=119.80 Aligned_cols=217 Identities=17% Similarity=0.088 Sum_probs=152.3
Q ss_pred CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccEEEeeC
Q 036679 8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISS 87 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~ 87 (294)
.+++|++|+|++|.++. ++ ..+++|++|++++|. +..+.- .+++|+.|+++++. +..+....++|++|++++
T Consensus 79 ~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~-l~~l~~-~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~ 150 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD 150 (622)
T ss_dssp CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEECSCC-CCCCCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECcCCc-CCCCCC-CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcC
Confidence 57899999999998853 22 278999999999874 444432 46789999999874 444444568999999999
Q ss_pred CCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeecccCceeeeccCC
Q 036679 88 LHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTP 167 (294)
Q Consensus 88 c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~~l~~~~~~~p 167 (294)
|.+.... ...++|+.|++.++.++. ++ ..+++|+.|+++++. ++.++...++|+.|++.+|. ++.++...+
T Consensus 151 N~l~~l~--~~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~ 221 (622)
T 3g06_A 151 NQLASLP--ALPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPS 221 (622)
T ss_dssp SCCSCCC--CCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCT
T ss_pred CcCCCcC--CccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCC
Confidence 8743211 245789999999988775 22 567899999999854 55555445789999998875 445555568
Q ss_pred CccEEEEcCceeee-ecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCC
Q 036679 168 NLSVFDYEGDMVSF-SSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTY 246 (294)
Q Consensus 168 ~L~~l~~~g~~~~~-~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~ 246 (294)
+|++|+++++.+.. ....++|+.+.+..+.+ ..++..+++|+. |.++.+....+|.. ...+++
T Consensus 222 ~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L----------~~lp~~~~~L~~-L~Ls~N~L~~lp~~-----l~~l~~ 285 (622)
T 3g06_A 222 GLKELIVSGNRLTSLPVLPSELKELMVSGNRL----------TSLPMLPSGLLS-LSVYRNQLTRLPES-----LIHLSS 285 (622)
T ss_dssp TCCEEECCSSCCSCCCCCCTTCCEEECCSSCC----------SCCCCCCTTCCE-EECCSSCCCSCCGG-----GGGSCT
T ss_pred CCCEEEccCCccCcCCCCCCcCcEEECCCCCC----------CcCCcccccCcE-EeCCCCCCCcCCHH-----Hhhccc
Confidence 89999998886622 23456677777632211 112225677777 57777666678876 345788
Q ss_pred CceEEEEEccc
Q 036679 247 ENHVCFIINSE 257 (294)
Q Consensus 247 Lk~L~L~~~~~ 257 (294)
|+.|.|..|..
T Consensus 286 L~~L~L~~N~l 296 (622)
T 3g06_A 286 ETTVNLEGNPL 296 (622)
T ss_dssp TCEEECCSCCC
T ss_pred cCEEEecCCCC
Confidence 99999987543
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=2.4e-12 Score=110.85 Aligned_cols=214 Identities=13% Similarity=0.015 Sum_probs=122.9
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-----ccCCCCCccEEEccccC--CcccccccCCccc
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-----EFLNLGKLSKFMVRNED--RLARVSICGPNVR 81 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-----~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~ 81 (294)
.++|++|+|++|.+++ .....+..+++|++|+++++. +... .+.++++|++|+++++. .+.......++|+
T Consensus 27 ~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 3678888888887752 122345677888888887764 3221 22346778888887764 1111122457778
Q ss_pred EEEeeCCCCC---cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccce-eecc--c-ccccceEEee
Q 036679 82 LVDISSLHAP---CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIR-SIKI--S-SPYLKKLLVR 154 (294)
Q Consensus 82 ~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~-~l~i--~-~~~L~~L~l~ 154 (294)
+|+++++... ....+..+++|++|+++++.+++. ....+..+++|+.|+++++.-.. .++. . .++|++|+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 8877777522 112456677788888877765542 23345667778888877754222 1111 1 1577777777
Q ss_pred cccCceeee----ccCCCccEEEEcCceeeeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeee
Q 036679 155 FCNKLYEFK----LDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAA 230 (294)
Q Consensus 155 ~c~~l~~~~----~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~ 230 (294)
+|.. +.+. ...++|++|+++++.+. .+ .. ..++.+++|+. |+++.+...
T Consensus 184 ~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~---------~~---------~~-------~~~~~l~~L~~-L~L~~N~l~ 236 (306)
T 2z66_A 184 QCQL-EQLSPTAFNSLSSLQVLNMSHNNFF---------SL---------DT-------FPYKCLNSLQV-LDYSLNHIM 236 (306)
T ss_dssp TSCC-CEECTTTTTTCTTCCEEECTTSCCS---------BC---------CS-------GGGTTCTTCCE-EECTTSCCC
T ss_pred CCCc-CCcCHHHhcCCCCCCEEECCCCccC---------cc---------Ch-------hhccCcccCCE-eECCCCCCc
Confidence 7653 3331 13456666666665331 00 00 01345677777 477765544
Q ss_pred ec-chhhhhccCCCC-CCCceEEEEEccc
Q 036679 231 II-PRELREILSSPL-TYENHVCFIINSE 257 (294)
Q Consensus 231 ~~-p~~~~~~~~~~f-~~Lk~L~L~~~~~ 257 (294)
.. |.. ...+ .+|++|.+..|..
T Consensus 237 ~~~~~~-----~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 237 TSKKQE-----LQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp BCSSSS-----CCCCCTTCCEEECTTCCE
T ss_pred ccCHHH-----HHhhhccCCEEEccCCCe
Confidence 33 333 3344 4899999987644
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=1.2e-12 Score=114.01 Aligned_cols=256 Identities=16% Similarity=0.125 Sum_probs=166.5
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-ccccCCcccEE
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSICGPNVRLV 83 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L 83 (294)
.+++.++++++.++. ++. .-.+.++.|+++++. +..+ .+.++++|++|+++++. .+.. .....++|++|
T Consensus 31 c~l~~l~~~~~~l~~--lp~--~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK--VPK--DLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCCS--CCC--SCCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCccc--cCc--cCCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 378999998886642 221 124789999999985 4333 35678999999999885 2211 12246899999
Q ss_pred EeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccccccee--ec---cc-ccccceEEeeccc
Q 036679 84 DISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRS--IK---IS-SPYLKKLLVRFCN 157 (294)
Q Consensus 84 ~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~--l~---i~-~~~L~~L~l~~c~ 157 (294)
+++++..... .....++|++|+++++.+++. ....+.++++|+.|+++++.. +. +. +. .++|++|+++++.
T Consensus 106 ~Ls~n~l~~l-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKEL-PEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSBC-CSSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCC-CGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCcc-ChhhcccccEEECCCCccccc-CHhHhcCCccccEEECCCCcC-CccCcChhhccCCCCcCEEECCCCc
Confidence 9999874311 112237999999999987753 344578899999999998653 21 11 11 2789999999886
Q ss_pred Cceeeec-cCCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeee
Q 036679 158 KLYEFKL-DTPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAI 231 (294)
Q Consensus 158 ~l~~~~~-~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~ 231 (294)
. +.++. ..++|++++++++.+ ..+...++|+.+.+....+.... ...+..+++|+. |.++.+....
T Consensus 183 l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~-L~L~~N~l~~ 254 (330)
T 1xku_A 183 I-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------NGSLANTPHLRE-LHLNNNKLVK 254 (330)
T ss_dssp C-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC------TTTGGGSTTCCE-EECCSSCCSS
T ss_pred c-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC------hhhccCCCCCCE-EECCCCcCcc
Confidence 3 33432 237899999998865 12445667888877322211100 123556788888 5887777778
Q ss_pred cchhhhhccCCCCCCCceEEEEEccccchhhHHHHHH--HHhhcCCCCCeeEEeeCCCC
Q 036679 232 IPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLD--SLLWISPHAETLSIKCNDCD 288 (294)
Q Consensus 232 ~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~--~lL~~~P~le~l~i~~~~~~ 288 (294)
+|++ ...+++|++|.+..|....... ..+. ......+.++.+.+.+.+.+
T Consensus 255 lp~~-----l~~l~~L~~L~l~~N~i~~~~~--~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 255 VPGG-----LADHKYIQVVYLHNNNISAIGS--NDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCTT-----TTTCSSCCEEECCSSCCCCCCT--TSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CChh-----hccCCCcCEEECCCCcCCccCh--hhcCCcccccccccccceEeecCccc
Confidence 8876 5567899999998753321110 0010 11223578889998887653
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.35 E-value=6.4e-12 Score=117.25 Aligned_cols=126 Identities=16% Similarity=0.090 Sum_probs=91.7
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCccccc-ccC
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVS-ICG 77 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~~-~~~ 77 (294)
+|... .++|++|+|++|.+++- .+..+.++++|++|++++|. +..+. +.++++|++|+++++. +..+. ...
T Consensus 46 ip~~~--~~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l 120 (562)
T 3a79_B 46 VPKDL--PPRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPM 120 (562)
T ss_dssp CCTTS--CTTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSC-CCEECSCCC
T ss_pred CCCCC--CCCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCc-CCccCcccc
Confidence 56544 38999999999988542 12346889999999999884 54442 5677899999999886 22221 157
Q ss_pred CcccEEEeeCCCCC---cccccccccccceEEecccccChHHHHHHhcCCCCC--cEEeecccc
Q 036679 78 PNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFL--EYLEIFRCM 136 (294)
Q Consensus 78 ~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L--~~L~l~~c~ 136 (294)
++|++|++++|... .+..++.+++|++|+++++.+++.. +..+++| +.|+++++.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEESS
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEeeccc
Confidence 89999999999743 2346788899999999999887643 3344555 999888754
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.35 E-value=5.2e-12 Score=117.33 Aligned_cols=216 Identities=13% Similarity=0.126 Sum_probs=138.0
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cc
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SI 75 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~ 75 (294)
+|... +++|++|+|++|.+++.. +..+.++++|++|+++++. +..+. +.++++|++|+++++. .+..- ..
T Consensus 20 ip~~~--~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 20 IPSGL--TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp CCSCC--CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred ccccC--CCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 56544 379999999999886421 2346889999999999984 44432 5678899999999885 22221 22
Q ss_pred cCCcccEEEeeCCCCC---cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc--c-ccccc
Q 036679 76 CGPNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI--S-SPYLK 149 (294)
Q Consensus 76 ~~~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i--~-~~~L~ 149 (294)
..++|++|++++|... .+..++.+++|++|+++++...+......+.++++|+.|+++++.--...+. . .++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 5689999999999743 2345778899999999998732221123467789999999998653222221 1 26888
Q ss_pred eEEeecccCceeee----ccCCCccEEEEcCceeee--------ecCccccceEEEEEEEeccChhHHHHHHHHHhcCcc
Q 036679 150 KLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVSF--------SSNALALSETSLCLDSINVDNQWLVKFIELLAKLNH 217 (294)
Q Consensus 150 ~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~~--------~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~ 217 (294)
+|+++.+..- .++ -..++|+.++++++.... ....++++.+.+.... ........+.+.+..+++
T Consensus 176 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV--LTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE--EEHHHHHHHHGGGGGCTT
T ss_pred eEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc--cchhHHHHHHHHhhhhcc
Confidence 8988877632 111 236789999988875511 1234567777763222 122222233344455666
Q ss_pred cceeEEEe
Q 036679 218 CSNVLNLE 225 (294)
Q Consensus 218 l~~LL~~~ 225 (294)
++.+ .+.
T Consensus 253 L~~l-~l~ 259 (549)
T 2z81_A 253 LSEV-EFD 259 (549)
T ss_dssp CCEE-EEE
T ss_pred cccc-ccc
Confidence 6664 444
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.35 E-value=3.4e-12 Score=115.96 Aligned_cols=167 Identities=17% Similarity=0.172 Sum_probs=85.7
Q ss_pred CCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccce
Q 036679 77 GPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKK 150 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~ 150 (294)
.++|++|++++|.+.. +..+..+++|++|+++++.++.- ....+.++++|+.|++++|..++.+... .++|++
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 3455555555554221 12244555666666666554431 1123445566666666665555554322 145666
Q ss_pred EEeecccCceeee--ccCCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEE
Q 036679 151 LLVRFCNKLYEFK--LDTPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLN 223 (294)
Q Consensus 151 L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~ 223 (294)
|++++|.. +.++ ...++|+.|+++++.+ ..+.+.++|+.+.+....+.... ...+..+++|+. |+
T Consensus 201 L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~-L~ 272 (452)
T 3zyi_A 201 LNLGMCNI-KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE------RNAFDGLASLVE-LN 272 (452)
T ss_dssp EECTTSCC-SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC------TTTTTTCTTCCE-EE
T ss_pred EECCCCcc-cccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC------HHHhcCCCCCCE-EE
Confidence 66655542 2222 2345566666665543 12234445555554211110000 122456677777 57
Q ss_pred EeeeeeeecchhhhhccCCCCCCCceEEEEEcc
Q 036679 224 LECYAAAIIPRELREILSSPLTYENHVCFIINS 256 (294)
Q Consensus 224 ~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~ 256 (294)
++.+....+|.+. ...+++|++|.|..|.
T Consensus 273 L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 273 LAHNNLSSLPHDL----FTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCSSCCSCCCTTS----STTCTTCCEEECCSSC
T ss_pred CCCCcCCccChHH----hccccCCCEEEccCCC
Confidence 7777666777652 4567899999998763
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=3.9e-12 Score=115.21 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=27.5
Q ss_pred HhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEcc
Q 036679 212 LAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINS 256 (294)
Q Consensus 212 l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~ 256 (294)
+..+++|+. |+++.+....+|... ...+++|+.|.|..|.
T Consensus 251 ~~~l~~L~~-L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVE-INLAHNNLTLLPHDL----FTPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCE-EECTTSCCCCCCTTT----TSSCTTCCEEECCSSC
T ss_pred hcCCCCCCE-EECCCCCCCccChhH----hccccCCCEEEcCCCC
Confidence 345667777 577777666676652 4557889999998763
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.34 E-value=4.3e-11 Score=110.48 Aligned_cols=257 Identities=14% Similarity=0.092 Sum_probs=127.0
Q ss_pred CCCCCccEEEeeecccChHHHHHHHh--cCCCCCEEEEEcCCCCCee--cc-----CCCCCccEEEccccCC-cc--ccc
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVA--GCPLIERLKIIDCRGLKSL--EF-----LNLGKLSKFMVRNEDR-LA--RVS 74 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~--~~~~Le~L~L~~c~~l~~l--~~-----~~l~~L~~L~l~~c~~-l~--~~~ 74 (294)
..+++|+.|+++++.+++..+..+.. .+++|++|++++|.--..+ .+ .++++|+.++++++.. +. .+.
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~ 296 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHH
T ss_pred ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhh
Confidence 44556666666666655443333322 2457777777776411011 11 3455566666655432 10 000
Q ss_pred --ccCCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-----cc-cc
Q 036679 75 --ICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-----IS-SP 146 (294)
Q Consensus 75 --~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-----i~-~~ 146 (294)
...++|+.|+++++..........+++|++|+++++.+++. ++..+.++++|+.|+++++. ++.+. +. .+
T Consensus 297 ~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~ 374 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMK 374 (520)
T ss_dssp HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCT
T ss_pred cccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh-hhhhhccCCCCCEEEccCCc-cCccccchHHHhhCC
Confidence 01134666666665532211124556666666666665542 22334556666666666543 22211 11 15
Q ss_pred ccceEEeecccCceeee----ccCCCccEEEEcCcee--eeecCc-cccceEEEEEEEeccChhHHHHHHHHHhcCcccc
Q 036679 147 YLKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMV--SFSSNA-LALSETSLCLDSINVDNQWLVKFIELLAKLNHCS 219 (294)
Q Consensus 147 ~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~--~~~~~~-~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~ 219 (294)
+|++|++++|.....++ ...++|++++++++.. ..+... ++|+.+++....+. .++..+..+++|+
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-------~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-------SIPKQVVKLEALQ 447 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-------CCCGGGGGCTTCC
T ss_pred CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-------ccchhhhcCCCCC
Confidence 66666666655332232 1235666666666544 111111 35555555221111 1112233677888
Q ss_pred eeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCC
Q 036679 220 NVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHA 277 (294)
Q Consensus 220 ~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~l 277 (294)
. |+++.+....+|.. ....+++|++|.+..|.....-....++...++..+..
T Consensus 448 ~-L~L~~N~l~~l~~~----~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~ 500 (520)
T 2z7x_B 448 E-LNVASNQLKSVPDG----IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 500 (520)
T ss_dssp E-EECCSSCCCCCCTT----TTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT
T ss_pred E-EECCCCcCCccCHH----HhccCCcccEEECcCCCCcccCCchHHHHHHHHhcccc
Confidence 8 57777777777765 24567899999998865433333333434445544443
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.33 E-value=4.4e-12 Score=118.35 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=65.4
Q ss_pred CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--Ccc--cccccCCc
Q 036679 4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RLA--RVSICGPN 79 (294)
Q Consensus 4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l~--~~~~~~~~ 79 (294)
..+..+++|++|+|++|.+++- .+..+.++++|++|+++++. +..+.-..+++|++|+++++. .+. ......++
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred hhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEECCCCCccccCchHhhcccCc
Confidence 5677889999999999987542 12346778999999998874 555544467788888888775 211 11224567
Q ss_pred ccEEEeeCCCCCccccccccccc--ceEEeccc
Q 036679 80 VRLVDISSLHAPCGINVALCKNL--KELKLFKL 110 (294)
Q Consensus 80 L~~L~l~~c~~~~~~~~~~~~~L--~~L~L~~~ 110 (294)
|+.|+++++.... ..+..+++| ++|+++++
T Consensus 148 L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 148 LTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CCEEEEECSBCCT-TTTGGGTTSCEEEEEEEES
T ss_pred ccEEecCCCcccc-CchhhhhhceeeEEEeecc
Confidence 7777777765321 122333333 55555444
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.33 E-value=1.4e-12 Score=124.37 Aligned_cols=270 Identities=17% Similarity=0.141 Sum_probs=159.6
Q ss_pred CCCCCCCCCccEEEeeecccChH----HHHH----HHhcCCCCCEEEEEcCCC--CCeeccCCCCCccEEEccccC-Ccc
Q 036679 3 PTRNVTLSSLRELGLFKCAANDE----AIRD----IVAGCPLIERLKIIDCRG--LKSLEFLNLGKLSKFMVRNED-RLA 71 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~----~l~~----~~~~~~~Le~L~L~~c~~--l~~l~~~~l~~L~~L~l~~c~-~l~ 71 (294)
|..+..+++|++|+++++..... .++. .+..+++|++|+++++.- +..-.+.++++|++|++++|. ...
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence 56677889999999987643211 1111 356788999999988752 111124567888999888775 222
Q ss_pred ccc------ccCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc
Q 036679 72 RVS------ICGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI 143 (294)
Q Consensus 72 ~~~------~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i 143 (294)
.+. ...++|+.|++++|.... +..+..+++|+.|+++++.+++......+.++++|+.|+++++. +..+..
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 447 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTR 447 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCT
T ss_pred hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeCh
Confidence 211 123578888888886432 23456778888888888876542112346678888888888865 333321
Q ss_pred c----ccccceEEeecccCc--eeee---ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHHHHH-
Q 036679 144 S----SPYLKKLLVRFCNKL--YEFK---LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWLVKF- 208 (294)
Q Consensus 144 ~----~~~L~~L~l~~c~~l--~~~~---~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~~- 208 (294)
. .++|+.|++.++..- ..++ ..+++|+.++++++.+. .+.+.++|+.+++.-..+. ..+...+
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~ 525 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA--RLWKHANP 525 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG--GGGSTTST
T ss_pred hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc--ccchhhcc
Confidence 1 267888888776531 1121 24577888888777541 1334566777766322110 0000000
Q ss_pred ---HHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEeeC
Q 036679 209 ---IELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIKCN 285 (294)
Q Consensus 209 ---~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~~~ 285 (294)
..+++.+++|+. |+++.+....+|.+. ...+++|++|.|..|... . +....+..+|.|++|.+...
T Consensus 526 ~~~~~~~~~l~~L~~-L~L~~N~l~~i~~~~----~~~l~~L~~L~Ls~N~l~---~---l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHI-LNLESNGFDEIPVEV----FKDLFELKIIDLGLNNLN---T---LPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TSCCCTTTTCTTCCE-EECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC---C---CCTTTTTTCTTCCEEECTTS
T ss_pred CCcchhhcCCCCCCE-EECCCCCCCCCCHHH----cccccCcceeECCCCCCC---c---CCHhHhCCCCCCCEEECCCC
Confidence 012445666666 577766666676542 345678888888764332 1 22334567788888888765
Q ss_pred C
Q 036679 286 D 286 (294)
Q Consensus 286 ~ 286 (294)
.
T Consensus 595 ~ 595 (680)
T 1ziw_A 595 L 595 (680)
T ss_dssp C
T ss_pred c
Confidence 3
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.32 E-value=1.4e-11 Score=114.34 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=24.6
Q ss_pred CCCccEEEeeecccChHHHH---HHHhcCCCCCEEEEEcCC
Q 036679 9 LSSLRELGLFKCAANDEAIR---DIVAGCPLIERLKIIDCR 46 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~---~~~~~~~~Le~L~L~~c~ 46 (294)
+++|++|+++++.+++..+. .....+++|+.|++++|.
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 55666666666666553333 334667888888888774
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.32 E-value=8e-12 Score=106.45 Aligned_cols=182 Identities=15% Similarity=0.029 Sum_probs=128.4
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCccc
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVR 81 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~ 81 (294)
.++|++|+++++.+++- ....+..+++|++|+++++. +..+ .+.++++|++|+++++..+..+ ....++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 57899999999988642 22346789999999999874 4444 3567789999999988634333 22468999
Q ss_pred EEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeec
Q 036679 82 LVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRF 155 (294)
Q Consensus 82 ~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~ 155 (294)
+|++++|.... +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+... .++|++|++++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-CHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence 99999987432 23467789999999999887652 22346778999999999864 5555432 27899999998
Q ss_pred ccCceeee---ccCCCccEEEEcCceee-----eecCccccceEEEE
Q 036679 156 CNKLYEFK---LDTPNLSVFDYEGDMVS-----FSSNALALSETSLC 194 (294)
Q Consensus 156 c~~l~~~~---~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~ 194 (294)
+......+ ...++|+.++++++.+. .+...++|+.+.+.
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 87432212 24678999999887651 23455677777763
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.32 E-value=7.5e-12 Score=106.63 Aligned_cols=172 Identities=16% Similarity=0.100 Sum_probs=127.3
Q ss_pred CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-ccccC
Q 036679 4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSICG 77 (294)
Q Consensus 4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~~~ 77 (294)
..+..+++|++|+|++|.+++. .+..+..+++|++|+++++..+..+ .+.++++|++|+++++. .+.. .....
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred HHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence 4567899999999999988542 1334678999999999999755544 35578999999999986 2211 12246
Q ss_pred CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceE
Q 036679 78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKL 151 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L 151 (294)
++|++|++++|.... +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+... .++|++|
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEe
Confidence 899999999997432 23367889999999999987752 22346779999999999965 4444221 2799999
Q ss_pred EeecccCceeee----ccCCCccEEEEcCcee
Q 036679 152 LVRFCNKLYEFK----LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 152 ~l~~c~~l~~~~----~~~p~L~~l~~~g~~~ 179 (294)
+++++.. +.++ ...++|+.+++.+++.
T Consensus 207 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 207 YLFANNL-SALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECCSSCC-SCCCHHHHTTCTTCCEEECCSSCE
T ss_pred eCCCCcC-CcCCHHHcccCcccCEEeccCCCc
Confidence 9999863 3343 3478999999998865
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.31 E-value=9.6e-12 Score=103.23 Aligned_cols=168 Identities=18% Similarity=0.147 Sum_probs=120.2
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCccccc----ccCCccc
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVS----ICGPNVR 81 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~ 81 (294)
.++|++|+++++.++.- ....+.++++|++|+++++..+..+. +.++++|++|++++|..+..+. ..+++|+
T Consensus 30 ~~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 34899999999988541 12246789999999999987566553 4567899999999844444332 2468999
Q ss_pred EEEeeCCCCCcccccccccccc---eEEeccc-ccChHHHHHHhcCCCCCc-EEeecccccceeeccc---ccccceEEe
Q 036679 82 LVDISSLHAPCGINVALCKNLK---ELKLFKL-SITNEWLCNQFSELPFLE-YLEIFRCMKIRSIKIS---SPYLKKLLV 153 (294)
Q Consensus 82 ~L~l~~c~~~~~~~~~~~~~L~---~L~L~~~-~i~~~~l~~l~~~~~~L~-~L~l~~c~~l~~l~i~---~~~L~~L~l 153 (294)
.|++++|.......+..+++|+ +|+++++ .+++- ....+.++++|+ .|+++++. ++.++.. .++|++|++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEEC
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEc
Confidence 9999998743222366777787 9999998 76542 123466789999 99998754 5555432 268999999
Q ss_pred ecccCceeeec----cC-CCccEEEEcCcee
Q 036679 154 RFCNKLYEFKL----DT-PNLSVFDYEGDMV 179 (294)
Q Consensus 154 ~~c~~l~~~~~----~~-p~L~~l~~~g~~~ 179 (294)
+++..++.++. .. ++|+.++++++.+
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 99876666642 34 7889999888765
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=3e-12 Score=117.49 Aligned_cols=205 Identities=12% Similarity=0.061 Sum_probs=143.6
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccE
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRL 82 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~ 82 (294)
|..+..+++|++|+|++|.+++.. + +..+++|++|++++|. +..+. ..++|++|++++|.--.......++|+.
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~~N~l~~~~~~~l~~L~~ 124 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAANNNISRVSCSRGQGKKN 124 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECCSSCCCCEEECCCSSCEE
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECcCCcCCCCCccccCCCCE
Confidence 356788999999999999886422 1 7889999999999983 44443 2388999999988622111224689999
Q ss_pred EEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc--ccccceEEeecccC
Q 036679 83 VDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS--SPYLKKLLVRFCNK 158 (294)
Q Consensus 83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~--~~~L~~L~l~~c~~ 158 (294)
|++++|.+.. +..++.+++|++|+++++.+++.....+...+++|+.|+++++. ++.+... .++|++|+++++.
T Consensus 125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~- 202 (487)
T 3oja_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK- 202 (487)
T ss_dssp EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSC-
T ss_pred EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCC-
Confidence 9999998432 34567889999999999998764334444578999999999965 4444322 3799999999986
Q ss_pred ceeee---ccCCCccEEEEcCceeee----ecCccccceEEEEEEEeccChhH-HHHHHHHHhcCccccee
Q 036679 159 LYEFK---LDTPNLSVFDYEGDMVSF----SSNALALSETSLCLDSINVDNQW-LVKFIELLAKLNHCSNV 221 (294)
Q Consensus 159 l~~~~---~~~p~L~~l~~~g~~~~~----~~~~~~L~~~~i~~~~~~~~~~~-~~~~~~~l~~l~~l~~L 221 (294)
++.++ ...++|+.|+++++.+.. +...++|+.+.+.. +.+ ...++.++..++.++.+
T Consensus 203 l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~------N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG------NGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT------CCBCHHHHHHHHTTCHHHHHH
T ss_pred CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC------CCCcCcchHHHHHhCCCCcEE
Confidence 44443 256899999999886622 23345677766621 112 13445666677777665
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=4.7e-12 Score=108.99 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=135.0
Q ss_pred CCCC-CCCCCCccEEEeeecccChH-HHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC--Cccc--c
Q 036679 2 SPTR-NVTLSSLRELGLFKCAANDE-AIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLAR--V 73 (294)
Q Consensus 2 ~p~~-~~~l~~Lk~L~L~~~~~~~~-~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~--~l~~--~ 73 (294)
+|.. +.++++|++|+|++|.++.. .....+..+++|++|+++++. +..+ .+.++++|++|+++++. .+.. .
T Consensus 43 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 121 (306)
T 2z66_A 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121 (306)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchh
Confidence 4544 47899999999999988642 112234578999999999985 3222 24567999999999875 2222 2
Q ss_pred cccCCcccEEEeeCCCCC--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc---c-ccc
Q 036679 74 SICGPNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI---S-SPY 147 (294)
Q Consensus 74 ~~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i---~-~~~ 147 (294)
....++|+.|++++|... .+..+..+++|++|+++++.+++..++..+..+++|+.|+++++. ++.+.. . .++
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCC
Confidence 235689999999998743 223467789999999999988764455567789999999999964 454422 1 278
Q ss_pred cceEEeecccCceeee----ccCCCccEEEEcCceee-----eecCc-cccceEEEE
Q 036679 148 LKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVS-----FSSNA-LALSETSLC 194 (294)
Q Consensus 148 L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~-----~~~~~-~~L~~~~i~ 194 (294)
|++|+++++... .+. ...++|+.++++++.+. .+... ++|+.+++.
T Consensus 201 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 201 LQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCccC-ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 999999998743 322 24689999999988651 12233 367777773
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=3.1e-11 Score=104.13 Aligned_cols=166 Identities=16% Similarity=0.123 Sum_probs=116.5
Q ss_pred CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCccc
Q 036679 5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVR 81 (294)
Q Consensus 5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~ 81 (294)
.+..+++|++|+|++|.+++-. . +..+++|++|+++++. +..+ .+..+++|++|++++|. .+.. ....++|+
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ 132 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred hhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence 4566889999999998876421 2 7788899999998875 3333 35567889999998875 2222 22467899
Q ss_pred EEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCc
Q 036679 82 LVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKL 159 (294)
Q Consensus 82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l 159 (294)
.|++++|.......+..+++|+.|+++++.+++- .. +..+++|+.|+++++. ++.+. +.. ++|++|++++|...
T Consensus 133 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCCC
T ss_pred EEECCCCccCcCccccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCccC
Confidence 9999888744333367788899999998887752 22 6778899999998864 44433 222 68899999888633
Q ss_pred eeee-ccCCCccEEEEcCcee
Q 036679 160 YEFK-LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 160 ~~~~-~~~p~L~~l~~~g~~~ 179 (294)
...+ ...++|+.+++.++.+
T Consensus 209 ~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 209 DVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp BCGGGTTCTTCCEEEEEEEEE
T ss_pred ccccccCCCCCCEEEccCCee
Confidence 2222 3567888888888765
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=1.5e-11 Score=111.77 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=76.3
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---------------------ccCCCCCccEEEccccC
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---------------------EFLNLGKLSKFMVRNED 68 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---------------------~~~~l~~L~~L~l~~c~ 68 (294)
++|++|++++|.+++ ++. ++.+++|++|+++++. +..+ .+.++++|++|++++|.
T Consensus 131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc
Confidence 466666666665542 222 4556666666666553 2111 12334555555555543
Q ss_pred CcccccccCCcccEEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccccccc
Q 036679 69 RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYL 148 (294)
Q Consensus 69 ~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L 148 (294)
+..+....++|+.|++++|....-..+..+++|++|+++++.+++ ++ ...++|+.|+++++. ++.++...++|
T Consensus 207 -l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l~~N~-l~~l~~~~~~L 279 (454)
T 1jl5_A 207 -LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT--LP---DLPPSLEALNVRDNY-LTDLPELPQSL 279 (454)
T ss_dssp -CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS--CC---SCCTTCCEEECCSSC-CSCCCCCCTTC
T ss_pred -CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc--cc---ccccccCEEECCCCc-ccccCcccCcC
Confidence 111212234566666666653211134566666777776665543 11 123566666666543 33332222456
Q ss_pred ceEEeecccCceeeeccCCCccEEEEcCcee
Q 036679 149 KKLLVRFCNKLYEFKLDTPNLSVFDYEGDMV 179 (294)
Q Consensus 149 ~~L~l~~c~~l~~~~~~~p~L~~l~~~g~~~ 179 (294)
++|++++|. ++.++...++|+.++++++..
T Consensus 280 ~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 280 TFLDVSENI-FSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp CEEECCSSC-CSEESCCCTTCCEEECCSSCC
T ss_pred CEEECcCCc-cCcccCcCCcCCEEECcCCcC
Confidence 666665554 222222224555555554433
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.30 E-value=6.6e-12 Score=114.06 Aligned_cols=184 Identities=21% Similarity=0.151 Sum_probs=126.2
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cc
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SI 75 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~ 75 (294)
|..+.++++|++|+|++|.+++- ....+.++++|++|+++++. +..+. +.++++|++|+++++. +..+ ..
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 168 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFN 168 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTT
T ss_pred HHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHh
Confidence 56678899999999999988642 22346789999999999985 43332 4567899999998875 2222 22
Q ss_pred cCCcccEEEeeCCCC-C--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----cccc
Q 036679 76 CGPNVRLVDISSLHA-P--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYL 148 (294)
Q Consensus 76 ~~~~L~~L~l~~c~~-~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L 148 (294)
..++|+.|++++|.. . ....+..+++|++|+++++.+++- + .+..+++|+.|+++++. ++.+... .++|
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSL 244 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C-CCTTCTTCCEEECTTSC-CSEECGGGGTTCTTC
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c-cccccccccEEECcCCc-CcccCcccccCccCC
Confidence 468899999988652 1 112466788899999998887652 2 25678889999998864 4444221 2688
Q ss_pred ceEEeecccCceeee----ccCCCccEEEEcCceee-----eecCccccceEEEE
Q 036679 149 KKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLC 194 (294)
Q Consensus 149 ~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~ 194 (294)
++|+++++.. +.+. .+.++|+.|+++++.+. .+...++|+.+++.
T Consensus 245 ~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 245 KKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred CEEEeCCCcC-ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 8888888763 3332 24578888888887651 23345667777763
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.28 E-value=2.7e-11 Score=110.22 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=44.5
Q ss_pred CCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcccccccCCcccEEEeeCCCCCcccccccccccceEEecccccC
Q 036679 35 PLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLSIT 113 (294)
Q Consensus 35 ~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~ 113 (294)
++|++|++++|. +..+ .+.++++|++|+++++. +..+....++|++|++++|.......+..+++|++|+++++.++
T Consensus 131 ~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECcCCC-CCCCcccCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence 456666666653 2222 24556778888887764 33332234577888887776322223556666666666666554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=6.1e-13 Score=115.31 Aligned_cols=230 Identities=9% Similarity=0.028 Sum_probs=152.9
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCC--cccccccCCcccEEEeeCCCCCcccccccc
Q 036679 25 EAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDR--LARVSICGPNVRLVDISSLHAPCGINVALC 99 (294)
Q Consensus 25 ~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~--l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 99 (294)
+.+..+...+++|++|+++++. +..+ .+.++++|++|+++++.- ..+ ....++|++|++++|.+. .+...
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~---~l~~~ 98 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ---ELLVG 98 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE---EEEEC
T ss_pred hhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc---cccCC
Confidence 4556677888999999999985 3332 356789999999999862 222 235689999999998642 22345
Q ss_pred cccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec---cc-ccccceEEeecccCceeee-----ccCCCcc
Q 036679 100 KNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---IS-SPYLKKLLVRFCNKLYEFK-----LDTPNLS 170 (294)
Q Consensus 100 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i~-~~~L~~L~l~~c~~l~~~~-----~~~p~L~ 170 (294)
++|++|+++++.+++.. ...+++|+.|+++++. ++.+. .. .++|++|+++++... .+. ...++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNISRVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccCCcC----ccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-cccHHHHhhccCcCC
Confidence 88999999999877532 2357899999999864 44332 12 268999999988643 332 2468999
Q ss_pred EEEEcCceee---eecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCC
Q 036679 171 VFDYEGDMVS---FSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYE 247 (294)
Q Consensus 171 ~l~~~g~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~L 247 (294)
.++++++.+. .....++|+.+++....+... ...+..+++|+. |+++.+....+|+. ...+++|
T Consensus 173 ~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l-------~~~~~~l~~L~~-L~L~~N~l~~l~~~-----~~~l~~L 239 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-------GPEFQSAAGVTW-ISLRNNKLVLIEKA-----LRFSQNL 239 (317)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-------CGGGGGGTTCSE-EECTTSCCCEECTT-----CCCCTTC
T ss_pred EEECCCCcCcccccccccccCCEEECCCCcCCcc-------hhhhcccCcccE-EECcCCcccchhhH-----hhcCCCC
Confidence 9999988662 122356788777732221110 111456677777 58887777778876 5667899
Q ss_pred ceEEEEEccccchhhHHHHHHHHhhcCCCCCeeEEe
Q 036679 248 NHVCFIINSEYNTFSLAKLLDSLLWISPHAETLSIK 283 (294)
Q Consensus 248 k~L~L~~~~~~~~~~~~~~~~~lL~~~P~le~l~i~ 283 (294)
++|.+..|.... +.+...+...|.|+++.+.
T Consensus 240 ~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 240 EHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CEEECTTCCCBH-----HHHHHHHHTCHHHHHHHHH
T ss_pred CEEEccCCCccC-----cCHHHHHhccccceEEECC
Confidence 999998753310 1233345566666666654
No 70
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.28 E-value=6.2e-12 Score=108.81 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=131.9
Q ss_pred CCCCCCCCCCccEEEeee-cccChHHHHHHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccCC---cccccc
Q 036679 2 SPTRNVTLSSLRELGLFK-CAANDEAIRDIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDR---LARVSI 75 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~-~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~~---l~~~~~ 75 (294)
+|..+.++++|++|+|++ +.+.+. ++..+..+++|++|+++++.--..+ .+.++++|++|+++++.- +.....
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 577788999999999995 766432 3334788999999999998532122 256789999999998861 212223
Q ss_pred cCCcccEEEeeCCCCC--ccccccccc-ccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee-cc--c-cccc
Q 036679 76 CGPNVRLVDISSLHAP--CGINVALCK-NLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI-KI--S-SPYL 148 (294)
Q Consensus 76 ~~~~L~~L~l~~c~~~--~~~~~~~~~-~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l-~i--~-~~~L 148 (294)
..++|++|++++|.+. .+..+..++ +|++|+++++.+++. ++..+..++ |+.|+++++. ++.. +. . .++|
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-IPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNT 223 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-CCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCC
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-CChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCC
Confidence 5789999999999743 334566676 899999999987643 344455565 9999999865 3332 21 1 2789
Q ss_pred ceEEeecccCceeee--ccCCCccEEEEcCceee-----eecCccccceEEEE
Q 036679 149 KKLLVRFCNKLYEFK--LDTPNLSVFDYEGDMVS-----FSSNALALSETSLC 194 (294)
Q Consensus 149 ~~L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~ 194 (294)
++|+++++.....++ ...++|++|+++++.+. .+...++|+.+++.
T Consensus 224 ~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp SEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 999999886432222 24578999999988652 23455678877773
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.27 E-value=1.9e-11 Score=110.61 Aligned_cols=183 Identities=19% Similarity=0.208 Sum_probs=118.7
Q ss_pred CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----ccc
Q 036679 4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SIC 76 (294)
Q Consensus 4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~ 76 (294)
..+.++++|++|+|++|.++.- ....+.++++|++|+++++. +..+ .+.++++|++|+++++. +..+ ...
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~ 158 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR 158 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTT
T ss_pred HHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhh
Confidence 4456677777777777766431 11235667777777777763 3322 24456778888887764 2221 124
Q ss_pred CCcccEEEeeCCCC-C--cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccc
Q 036679 77 GPNVRLVDISSLHA-P--CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLK 149 (294)
Q Consensus 77 ~~~L~~L~l~~c~~-~--~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~ 149 (294)
.++|+.|++++|.. . ....+.++++|++|+++++.+++ ++. +..+++|+.|+++++. ++.+... .++|+
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPN-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CCC-CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--ccc-cCCCcccCEEECCCCc-cCccChhhhccCccCC
Confidence 57888888887652 1 11246778899999999998764 232 5678899999999864 5554322 26899
Q ss_pred eEEeecccCceeee----ccCCCccEEEEcCceee-----eecCccccceEEEE
Q 036679 150 KLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLC 194 (294)
Q Consensus 150 ~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~ 194 (294)
+|++.++. ++.+. .+.++|+.|+++++.+. .+...++|+.+++.
T Consensus 235 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 235 KLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp EEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred EEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcC
Confidence 99998876 33443 24688999999888651 12345677777773
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=4.1e-11 Score=102.54 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=116.4
Q ss_pred CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEE
Q 036679 8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVD 84 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~ 84 (294)
.+++|++|++++|.+.+- +. +..+++|++|++++|. +..+ .+.++++|++|+++++. .+.. ...+++|+.|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 467899999999887542 22 6778999999999885 2222 26678899999998875 2222 22468899999
Q ss_pred eeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeecccCceee
Q 036679 85 ISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCNKLYEF 162 (294)
Q Consensus 85 l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~~l~~~ 162 (294)
+++|.......+..+++|+.|+++++.+++- ..+..+++|+.|+++++. ++.+. +.. ++|++|+++++. ++.+
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~-i~~l 193 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNH-ISDL 193 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCBC
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCc-CCCC
Confidence 9988754334567788999999999887763 346778999999998864 44432 222 689999998885 3333
Q ss_pred e--ccCCCccEEEEcCcee
Q 036679 163 K--LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 163 ~--~~~p~L~~l~~~g~~~ 179 (294)
+ ...++|+.+++.++.+
T Consensus 194 ~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GGGTTCTTCSEEEEEEEEE
T ss_pred hhhccCCCCCEEECcCCcc
Confidence 3 3567888898888765
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=3.4e-12 Score=111.16 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=113.5
Q ss_pred CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCe--ec--cCCCCCccEEEccccCCccc-----ccc
Q 036679 5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKS--LE--FLNLGKLSKFMVRNEDRLAR-----VSI 75 (294)
Q Consensus 5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~--l~--~~~l~~L~~L~l~~c~~l~~-----~~~ 75 (294)
....+++|++|+|++|.+++..+. .++.+++|++|++++|..+.. +. +.++++|++|++++|..+.. ...
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 346789999999999998766555 456799999999999976552 21 34679999999999954432 223
Q ss_pred cCC-cccEEEeeCCC--CC---cccccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeecccccceeec---cc-
Q 036679 76 CGP-NVRLVDISSLH--AP---CGINVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKIRSIK---IS- 144 (294)
Q Consensus 76 ~~~-~L~~L~l~~c~--~~---~~~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~---i~- 144 (294)
.++ +|++|++++|. .. .+..+..+++|++|+++++. +++..+. .+..+++|+.|++++|..+.... +.
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence 578 99999999994 22 12345678999999999998 7765444 46788999999999997554332 22
Q ss_pred ccccceEEeecc
Q 036679 145 SPYLKKLLVRFC 156 (294)
Q Consensus 145 ~~~L~~L~l~~c 156 (294)
.++|++|++++|
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 379999999999
No 74
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=2.6e-12 Score=112.01 Aligned_cols=254 Identities=16% Similarity=0.093 Sum_probs=164.7
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccE
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRL 82 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~ 82 (294)
.+++.++++++.+.. ++. .-.++++.|+++++. +..+ .+.++++|++|+++++. +..+ ...+++|++
T Consensus 33 c~l~~l~~~~~~l~~--ip~--~~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA--VPK--EISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp EETTEEECCSSCCSS--CCS--CCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCE
T ss_pred ccCCEEECCCCCccc--cCC--CCCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCE
Confidence 379999999987642 221 124789999999985 4444 35678999999999885 2222 224689999
Q ss_pred EEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-----ccccccceEEeecc
Q 036679 83 VDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-----ISSPYLKKLLVRFC 156 (294)
Q Consensus 83 L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-----i~~~~L~~L~l~~c 156 (294)
|+++++... .+.. ..++|++|+++++.+++. ....+.++++|+.|+++++. ++... ....+|++|+++++
T Consensus 107 L~L~~n~l~~l~~~--~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n 182 (332)
T 2ft3_A 107 LYISKNHLVEIPPN--LPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEA 182 (332)
T ss_dssp EECCSSCCCSCCSS--CCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSS
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCC
Confidence 999998743 1222 238999999999987652 23347789999999999864 32211 11138999999888
Q ss_pred cCceeeecc-CCCccEEEEcCcee-----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeee
Q 036679 157 NKLYEFKLD-TPNLSVFDYEGDMV-----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAA 230 (294)
Q Consensus 157 ~~l~~~~~~-~p~L~~l~~~g~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~ 230 (294)
. ++.++.. .++|++++++++.+ ..+...++|+.+.+....+.... ...+..+++|+. |+++.+...
T Consensus 183 ~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~-L~L~~N~l~ 254 (332)
T 2ft3_A 183 K-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE------NGSLSFLPTLRE-LHLDNNKLS 254 (332)
T ss_dssp B-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC------TTGGGGCTTCCE-EECCSSCCC
T ss_pred C-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC------hhHhhCCCCCCE-EECCCCcCe
Confidence 6 3334422 36899999988765 12345567777776322211111 123566788888 587777777
Q ss_pred ecchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHH--HhhcCCCCCeeEEeeCCCC
Q 036679 231 IIPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDS--LLWISPHAETLSIKCNDCD 288 (294)
Q Consensus 231 ~~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~--lL~~~P~le~l~i~~~~~~ 288 (294)
.+|.+ ...+++|++|.+..|....... ..+.. +....+.++++.+.+.+..
T Consensus 255 ~lp~~-----l~~l~~L~~L~l~~N~l~~~~~--~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 255 RVPAG-----LPDLKLLQVVYLHTNNITKVGV--NDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp BCCTT-----GGGCTTCCEEECCSSCCCBCCT--TSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ecChh-----hhcCccCCEEECCCCCCCccCh--hHccccccccccccccceEeecCccc
Confidence 88876 3457899999998754422110 11110 1122578899999887654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.23 E-value=3.2e-11 Score=102.23 Aligned_cols=180 Identities=18% Similarity=0.186 Sum_probs=124.1
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccc-cccccCCcccEE
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLA-RVSICGPNVRLV 83 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~-~~~~~~~~L~~L 83 (294)
++|++|++++|.+++.. ...+..+++|++|++++|. +..+. +.++++|++|+++++. .+. ......++|+.|
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccC-HhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 57999999999886421 2246789999999999984 44442 5567899999999885 111 112246899999
Q ss_pred EeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----cccc----eEEe
Q 036679 84 DISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----PYLK----KLLV 153 (294)
Q Consensus 84 ~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L~----~L~l 153 (294)
+++++.... +..+..+++|++|+++++.+++..++..+.++++|+.|+++++. ++.+.... ++|+ +|++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeec
Confidence 999987432 23467889999999999988764345667889999999999864 44443221 4555 7788
Q ss_pred ecccCceeee---ccCCCccEEEEcCceee-----eecCccccceEEE
Q 036679 154 RFCNKLYEFK---LDTPNLSVFDYEGDMVS-----FSSNALALSETSL 193 (294)
Q Consensus 154 ~~c~~l~~~~---~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i 193 (294)
+++. ++.++ ...++|+.++++++... .+...++|+.+.+
T Consensus 185 s~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 185 SLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp CSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred CCCc-ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 7775 33443 23447888888887651 1233455666655
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=1.1e-10 Score=93.85 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=85.6
Q ss_pred CCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcccc--cccCCcccEEEeeCCCCCc--ccccccccccceEEec
Q 036679 34 CPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARV--SICGPNVRLVDISSLHAPC--GINVALCKNLKELKLF 108 (294)
Q Consensus 34 ~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~ 108 (294)
+++|++|+++++. +..+ .+..+++|++|++++|. +..+ ...+++|++|++++|.... +..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSC-CSCCTTGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCC-ccChHHHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3455555555542 1111 23344555666665552 2111 1135677777777776432 3446678888888888
Q ss_pred ccccChHHHHHHhcCCCCCcEEeecccccceeecc-c-ccccceEEeecccCceeee--ccCCCccEEEEcCcee
Q 036679 109 KLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI-S-SPYLKKLLVRFCNKLYEFK--LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 109 ~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i-~-~~~L~~L~l~~c~~l~~~~--~~~p~L~~l~~~g~~~ 179 (294)
++.+++.. ...+..+++|+.|++++|..++.++. . .++|++|++++|. +++++ ...|+|+.+++.|+.+
T Consensus 121 ~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC--
T ss_pred CCccCcHh-HHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCccc
Confidence 88887643 34467788899999888775665542 1 2688888888876 33332 3467888888887653
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.22 E-value=8.9e-12 Score=110.82 Aligned_cols=246 Identities=12% Similarity=-0.019 Sum_probs=141.2
Q ss_pred EeeecccChHHH---HHHHhcCCCCCEEEEEcCCCC----Cee--ccCCCCCccEEEccccC--Ccc-----cc------
Q 036679 16 GLFKCAANDEAI---RDIVAGCPLIERLKIIDCRGL----KSL--EFLNLGKLSKFMVRNED--RLA-----RV------ 73 (294)
Q Consensus 16 ~L~~~~~~~~~l---~~~~~~~~~Le~L~L~~c~~l----~~l--~~~~l~~L~~L~l~~c~--~l~-----~~------ 73 (294)
.|..+.+++..+ ...+..+++|++|++++|.-- ..+ .+..+++|++|++++|. .+. .+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 334444555443 445778999999999998411 111 14467899999998873 221 11
Q ss_pred cccCCcccEEEeeCCCCCc------ccccccccccceEEecccccChHH---HHHHhcCC---------CCCcEEeeccc
Q 036679 74 SICGPNVRLVDISSLHAPC------GINVALCKNLKELKLFKLSITNEW---LCNQFSEL---------PFLEYLEIFRC 135 (294)
Q Consensus 74 ~~~~~~L~~L~l~~c~~~~------~~~~~~~~~L~~L~L~~~~i~~~~---l~~l~~~~---------~~L~~L~l~~c 135 (294)
...+++|++|++++|.+.. +..+..+++|++|++++|.+++.. +...+..+ ++|+.|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 0245788888888877432 123566788888888888776532 23333334 78888888775
Q ss_pred ccceeecc--------cccccceEEeecccCce-e-------eeccCCCccEEEEcCceeeeecCccccceEEEEEEEec
Q 036679 136 MKIRSIKI--------SSPYLKKLLVRFCNKLY-E-------FKLDTPNLSVFDYEGDMVSFSSNALALSETSLCLDSIN 199 (294)
Q Consensus 136 ~~l~~l~i--------~~~~L~~L~l~~c~~l~-~-------~~~~~p~L~~l~~~g~~~~~~~~~~~L~~~~i~~~~~~ 199 (294)
. ++...+ ..++|++|++++|..-. . .-...++|+.|+++++.+
T Consensus 170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-------------------- 228 (386)
T 2ca6_A 170 R-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-------------------- 228 (386)
T ss_dssp C-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC--------------------
T ss_pred C-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC--------------------
Confidence 4 221111 12467777777764210 0 011344555555544321
Q ss_pred cChhHHHHHHHHHhcCcccceeEEEeeeeeee-----cchhhhhccCCCCCCCceEEEEEccccchhhHHHHHHHHhhcC
Q 036679 200 VDNQWLVKFIELLAKLNHCSNVLNLECYAAAI-----IPRELREILSSPLTYENHVCFIINSEYNTFSLAKLLDSLLWIS 274 (294)
Q Consensus 200 ~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~-----~p~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~~~~~~lL~~~ 274 (294)
...-...+...+..+++|+.| .++.+.... +++.+. ...+++|++|.|..|.... .+...+...+...+
T Consensus 229 -~~~g~~~l~~~l~~~~~L~~L-~L~~n~i~~~~~~~l~~~l~---~~~~~~L~~L~L~~n~i~~-~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 229 -THLGSSALAIALKSWPNLREL-GLNDCLLSARGAAAVVDAFS---KLENIGLQTLRLQYNEIEL-DAVRTLKTVIDEKM 302 (386)
T ss_dssp -HHHHHHHHHHHGGGCTTCCEE-ECTTCCCCHHHHHHHHHHHH---TCSSCCCCEEECCSSCCBH-HHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHHHccCCCcCEE-ECCCCCCchhhHHHHHHHHh---hccCCCeEEEECcCCcCCH-HHHHHHHHHHHhcC
Confidence 111123345566778888884 666544322 344321 1347899999999754422 22333444444778
Q ss_pred CCCCeeEEeeCCCC
Q 036679 275 PHAETLSIKCNDCD 288 (294)
Q Consensus 275 P~le~l~i~~~~~~ 288 (294)
|+|++|.+.....+
T Consensus 303 ~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 303 PDLLFLELNGNRFS 316 (386)
T ss_dssp TTCCEEECTTSBSC
T ss_pred CCceEEEccCCcCC
Confidence 99999999886544
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.22 E-value=2e-11 Score=105.53 Aligned_cols=167 Identities=14% Similarity=0.090 Sum_probs=95.0
Q ss_pred ccEEEeeecccChHHHHHH-------HhcCCCCCEEEEEcCCCCCee--c--cCCCCCccEEEccccC--Cccccccc--
Q 036679 12 LRELGLFKCAANDEAIRDI-------VAGCPLIERLKIIDCRGLKSL--E--FLNLGKLSKFMVRNED--RLARVSIC-- 76 (294)
Q Consensus 12 Lk~L~L~~~~~~~~~l~~~-------~~~~~~Le~L~L~~c~~l~~l--~--~~~l~~L~~L~l~~c~--~l~~~~~~-- 76 (294)
|+.|+|+++.+....++.. ...+++|++|+++++.--..+ . +.++++|++|+++++. ........
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 6666776665532111111 225778888888877521111 1 2556778888887765 11110001
Q ss_pred ---CCcccEEEeeCCCCCc--ccccccccccceEEecccccChH-HHHHHh--cCCCCCcEEeecccccceeec-c----
Q 036679 77 ---GPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNE-WLCNQF--SELPFLEYLEIFRCMKIRSIK-I---- 143 (294)
Q Consensus 77 ---~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~-~l~~l~--~~~~~L~~L~l~~c~~l~~l~-i---- 143 (294)
.++|++|++++|.... +..+..+++|++|+++++.+.+. .+...+ ..+++|+.|+++++. ++.+. +
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 223 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSAL 223 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHH
Confidence 2678888888776321 23456777888888888775542 122222 667888888888754 33221 1
Q ss_pred --cccccceEEeecccCceeee----ccCCCccEEEEcCcee
Q 036679 144 --SSPYLKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 144 --~~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~ 179 (294)
..++|++|+++++......+ ...++|+.|+++++.+
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 11578888887776333221 1246788888877755
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=4.7e-11 Score=100.92 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=52.2
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Cccc-ccccCCcccEE
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLAR-VSICGPNVRLV 83 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L 83 (294)
++|++|+|+++.++.- ....+..+++|++|+++++. +..+. +.++++|++|+++++. .+.. .....++|+.|
T Consensus 37 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 3455555555544321 11123445555555555542 22221 2334555555555543 1110 01123455555
Q ss_pred EeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 84 DISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 84 ~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
+++++.... +..+..+++|++|+++++.+++. ....+..+++|+.|+++++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-CHhHccCCcccceeEecCC
Confidence 555554211 12234455555555555544331 1112344555555555543
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.20 E-value=6.6e-11 Score=101.22 Aligned_cols=179 Identities=15% Similarity=0.075 Sum_probs=104.3
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc--cccCCcc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV--SICGPNV 80 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~--~~~~~~L 80 (294)
..++++++.+++.++.++. ++. .-.+.++.|+++++. +..+ .+.++++|++|+++++. +..+ ....++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~--ip~--~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA--LPP--DLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSS--CCS--CCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTC
T ss_pred ccccCCccEEECCCCCCCc--CCC--CCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcC
Confidence 4667778888877776642 111 113567778777764 3333 24556777777777764 2221 1245677
Q ss_pred cEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeec
Q 036679 81 RLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRF 155 (294)
Q Consensus 81 ~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~ 155 (294)
+.|+++++.+. .+..+..+++|++|+++++.++.- ....+.++++|+.|+++++. ++.+... .++|+.|++++
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCC
Confidence 77777777632 223345667777888777776542 12335667778888777743 4444321 15777777777
Q ss_pred ccCceeeec----cCCCccEEEEcCceeee----ecCccccceEEE
Q 036679 156 CNKLYEFKL----DTPNLSVFDYEGDMVSF----SSNALALSETSL 193 (294)
Q Consensus 156 c~~l~~~~~----~~p~L~~l~~~g~~~~~----~~~~~~L~~~~i 193 (294)
+. ++.++. ..++|+.++++++.+.. .....+++.+.+
T Consensus 158 N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 158 NN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp SC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred Cc-CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 65 334432 34677777777765521 122334666655
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.20 E-value=4.2e-11 Score=99.30 Aligned_cols=168 Identities=11% Similarity=0.027 Sum_probs=120.9
Q ss_pred CCCCCCCCccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--CcccccccC
Q 036679 4 TRNVTLSSLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARVSICG 77 (294)
Q Consensus 4 ~~~~~l~~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~~~~~ 77 (294)
..+..+++|++|++++|. ++. .....+.++++|++|++++|..+..+. +.++++|++|+++++. .+.. ....
T Consensus 49 ~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l 126 (239)
T 2xwt_C 49 HAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKV 126 (239)
T ss_dssp TTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTC
T ss_pred HHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccc
Confidence 356789999999999996 643 112246789999999999977777664 3467899999999885 3322 1245
Q ss_pred Cccc---EEEeeCC-CCCc--ccccccccccc-eEEecccccChHHHH-HHhcCCCCCcEEeecccccceeeccc----c
Q 036679 78 PNVR---LVDISSL-HAPC--GINVALCKNLK-ELKLFKLSITNEWLC-NQFSELPFLEYLEIFRCMKIRSIKIS----S 145 (294)
Q Consensus 78 ~~L~---~L~l~~c-~~~~--~~~~~~~~~L~-~L~L~~~~i~~~~l~-~l~~~~~~L~~L~l~~c~~l~~l~i~----~ 145 (294)
++|+ .|+++++ .... +..+..+++|+ +|+++++.++. ++ ..+.. ++|+.|++++++.++.+... .
T Consensus 127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence 6676 9999999 5432 23467889999 99999998763 22 22333 79999999998667766432 3
Q ss_pred -cccceEEeecccCceeeec-cCCCccEEEEcCc
Q 036679 146 -PYLKKLLVRFCNKLYEFKL-DTPNLSVFDYEGD 177 (294)
Q Consensus 146 -~~L~~L~l~~c~~l~~~~~-~~p~L~~l~~~g~ 177 (294)
++|+.|+++++. ++.++. ..++|+.|++.+.
T Consensus 204 ~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 204 YSGPSLLDVSQTS-VTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp SBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC
T ss_pred ccCCcEEECCCCc-cccCChhHhccCceeeccCc
Confidence 689999999875 444443 4678888887654
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=7.6e-11 Score=99.79 Aligned_cols=166 Identities=13% Similarity=0.060 Sum_probs=109.8
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--Ccccc-cccCCcccE
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARV-SICGPNVRL 82 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~-~~~~~~L~~ 82 (294)
..+++|+.|+++++.+.+ +. -+..+++|++|+++++. +..+ .+..+++|++|++++|. .+..- ...+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 346788889988887753 11 15678899999988875 3222 35567888888888875 22111 124678888
Q ss_pred EEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc---c-ccccceEEeecc
Q 036679 83 VDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI---S-SPYLKKLLVRFC 156 (294)
Q Consensus 83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i---~-~~~L~~L~l~~c 156 (294)
|++++|.... +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+.. . .++|++|++++|
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCcc-CHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC
Confidence 8888887432 22356778888888888877642 22345678888888888864 444432 1 268888888887
Q ss_pred cCceeee----ccCCCccEEEEcCcee
Q 036679 157 NKLYEFK----LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 157 ~~l~~~~----~~~p~L~~l~~~g~~~ 179 (294)
... .+. ...++|+.+++.++..
T Consensus 192 ~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 192 QLK-SVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCC-ccCHHHHhCCcCCCEEEccCCCc
Confidence 633 332 2457788888777654
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=2.1e-11 Score=105.32 Aligned_cols=183 Identities=15% Similarity=0.115 Sum_probs=124.4
Q ss_pred CCCCccEEEeeecccChHHHHHH-HhcCCCCCEEEEEcCCCCCeec--cCC-----CCCccEEEccccC--Ccc-ccccc
Q 036679 8 TLSSLRELGLFKCAANDEAIRDI-VAGCPLIERLKIIDCRGLKSLE--FLN-----LGKLSKFMVRNED--RLA-RVSIC 76 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~-~~~~~~Le~L~L~~c~~l~~l~--~~~-----l~~L~~L~l~~c~--~l~-~~~~~ 76 (294)
.+++|++|+|++|.+++.....+ +..+++|++|+++++. +.... +.. .++|++|+++++. .+. .....
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 68999999999998864333322 3789999999999985 32211 112 2789999999886 222 11225
Q ss_pred CCcccEEEeeCCCCCc----c--cccccccccceEEecccccCh--HHHHHHhcCCCCCcEEeecccccceeec-cc---
Q 036679 77 GPNVRLVDISSLHAPC----G--INVALCKNLKELKLFKLSITN--EWLCNQFSELPFLEYLEIFRCMKIRSIK-IS--- 144 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~~----~--~~~~~~~~L~~L~L~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~--- 144 (294)
.++|+.|++++|.... + ..+..+++|++|+++++.+++ .....++.++++|+.|+++++. ++... ..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence 6899999999997321 1 223788999999999999874 2234556788999999999865 43322 11
Q ss_pred -ccccceEEeecccCceeeeccC-CCccEEEEcCceeee---ecCccccceEEE
Q 036679 145 -SPYLKKLLVRFCNKLYEFKLDT-PNLSVFDYEGDMVSF---SSNALALSETSL 193 (294)
Q Consensus 145 -~~~L~~L~l~~c~~l~~~~~~~-p~L~~l~~~g~~~~~---~~~~~~L~~~~i 193 (294)
.++|++|+++++.. +.++... ++|+.++++++.+.. +...++|+.+++
T Consensus 251 ~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGL-KQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSL 303 (312)
T ss_dssp CCTTCCEEECTTSCC-SSCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEEC
T ss_pred hcCCCCEEECCCCcc-ChhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEec
Confidence 26899999999873 3554322 689999999887622 223344555544
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=6.1e-11 Score=111.43 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=74.5
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccC--CcccccccCCcccEEEee
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDIS 86 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~ 86 (294)
+++|+.|++++|.+.+ ++ -+..+++|+.|+|++|.--....+..+++|+.|++++|. .+.. ...+++|+.|+++
T Consensus 42 L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT-STTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh-hccCCCCCEEEec
Confidence 4555555555555432 11 144555666666655531111113445555555555553 1111 1134555555555
Q ss_pred CCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceee-cccc-cccceEEeecccCceeee-
Q 036679 87 SLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSI-KISS-PYLKKLLVRFCNKLYEFK- 163 (294)
Q Consensus 87 ~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l-~i~~-~~L~~L~l~~c~~l~~~~- 163 (294)
+|.+.....+..+++|+.|+|+++.+++. ..+..+++|+.|+|++|. +..+ ++.. ++|+.|++++|. ++.++
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-i~~l~~ 192 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNH-ISDLRA 192 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCBCGG
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCC-CCCChH
Confidence 55533222344555555555555555432 234455555555555543 2222 1111 455555555553 22222
Q ss_pred -ccCCCccEEEEcCcee
Q 036679 164 -LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 164 -~~~p~L~~l~~~g~~~ 179 (294)
...++|+.|++.++.+
T Consensus 193 l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GTTCTTCSEEECCSEEE
T ss_pred HccCCCCCEEEccCCcC
Confidence 1345555555555443
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.18 E-value=2.4e-11 Score=104.83 Aligned_cols=183 Identities=13% Similarity=0.076 Sum_probs=111.7
Q ss_pred CCCccEEEeeecccChHHHHHHH-hcCCCCCEEEEEcCCCCC------eeccCCCCCccEEEccccCC--ccc-ccccCC
Q 036679 9 LSSLRELGLFKCAANDEAIRDIV-AGCPLIERLKIIDCRGLK------SLEFLNLGKLSKFMVRNEDR--LAR-VSICGP 78 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~-~~~~~Le~L~L~~c~~l~------~l~~~~l~~L~~L~l~~c~~--l~~-~~~~~~ 78 (294)
+++|++|++++|.+++.....++ ..+++|++|+++++.--. ...+..+++|++|++++|.- +.. .....+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 45688888888876543222222 677888888888875221 12234567888888887752 111 112467
Q ss_pred cccEEEeeCCCCCc------ccccccccccceEEecccccCh--HHHHHHhcCCCCCcEEeecccccceee-c--cc-c-
Q 036679 79 NVRLVDISSLHAPC------GINVALCKNLKELKLFKLSITN--EWLCNQFSELPFLEYLEIFRCMKIRSI-K--IS-S- 145 (294)
Q Consensus 79 ~L~~L~l~~c~~~~------~~~~~~~~~L~~L~L~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~l~~l-~--i~-~- 145 (294)
+|++|++++|.... ...+..+++|++|+++++.++. .....++.++++|+.|+++++. ++.. + +. .
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhcc
Confidence 88888888886321 1223567888888888888763 1122245677888888888754 3332 1 11 1
Q ss_pred --cccceEEeecccCceeeecc-CCCccEEEEcCceee---eecCccccceEEE
Q 036679 146 --PYLKKLLVRFCNKLYEFKLD-TPNLSVFDYEGDMVS---FSSNALALSETSL 193 (294)
Q Consensus 146 --~~L~~L~l~~c~~l~~~~~~-~p~L~~l~~~g~~~~---~~~~~~~L~~~~i 193 (294)
++|++|+++++.. +.++.. .++|+.|+++++.+. .+...++|+.+.+
T Consensus 249 ~~~~L~~L~Ls~N~l-~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 249 WSSALNSLNLSFAGL-EQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp CCTTCCCEECCSSCC-CSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred CcCcCCEEECCCCCC-CchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence 5788888887763 344322 368888888877652 2234456666655
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=7.6e-11 Score=94.88 Aligned_cols=143 Identities=18% Similarity=0.154 Sum_probs=108.0
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcc---cccccCCcccE
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLA---RVSICGPNVRL 82 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~---~~~~~~~~L~~ 82 (294)
..+++|++|+++++.+++ ++ -+..+++|++|++++| .+..+ .+..+++|++|+++++.--. .....+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 457899999999998864 22 3788999999999999 44443 46678999999999986211 11225689999
Q ss_pred EEeeCCCCCc--ccccccccccceEEecccc-cChHHHHHHhcCCCCCcEEeecccccceeec-ccc-cccceEEeeccc
Q 036679 83 VDISSLHAPC--GINVALCKNLKELKLFKLS-ITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-ISS-PYLKKLLVRFCN 157 (294)
Q Consensus 83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~~-~~L~~L~l~~c~ 157 (294)
|++++|.... +..+..+++|++|+++++. +++- + .+..+++|+.|++++|. ++.+. +.. ++|++|++++..
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 9999998543 3456788999999999997 7653 3 47789999999999875 45443 222 789999998765
No 87
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.17 E-value=6.9e-10 Score=97.35 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc-c-cccccccccceE
Q 036679 35 PLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC-G-INVALCKNLKEL 105 (294)
Q Consensus 35 ~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~-~-~~~~~~~~L~~L 105 (294)
++|++|+++++. +..+ .+.++++|++|+++++. +..+ ....++|++|++++|.... + ..+..+++|++|
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 355555555543 2222 13344555555555543 1111 1123455555555554221 1 113445555555
Q ss_pred EecccccChHHHHH--HhcCCCCCcEEeecccccceeeccc----ccccceEEeeccc
Q 036679 106 KLFKLSITNEWLCN--QFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCN 157 (294)
Q Consensus 106 ~L~~~~i~~~~l~~--l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~ 157 (294)
+++++.+++ ++. .+.++++|+.|+++++..++.+... .++|++|++++|.
T Consensus 130 ~L~~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 130 NLLGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 555554442 111 2344555555555554333333211 1355555555544
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.16 E-value=8.4e-11 Score=99.53 Aligned_cols=161 Identities=17% Similarity=0.117 Sum_probs=117.3
Q ss_pred CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccCC
Q 036679 5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICGP 78 (294)
Q Consensus 5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~~ 78 (294)
.+..+++|++|++++|.+++ +. .+..+++|++|++++|. +..+. +.++++|++|++++|. .+..- ....+
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 46679999999999998865 22 46789999999999984 33332 4678999999999986 22211 12468
Q ss_pred cccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEE
Q 036679 79 NVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLL 152 (294)
Q Consensus 79 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~ 152 (294)
+|+.|++++|.+.. +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+... .++|++|+
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEE
Confidence 99999999997432 23357889999999999988753 23446789999999999865 4444322 27999999
Q ss_pred eecccCceeeeccCCCccEEEEc
Q 036679 153 VRFCNKLYEFKLDTPNLSVFDYE 175 (294)
Q Consensus 153 l~~c~~l~~~~~~~p~L~~l~~~ 175 (294)
+++++.. ..+|+++.++..
T Consensus 212 l~~N~~~----~~~~~l~~l~~~ 230 (272)
T 3rfs_A 212 LHDNPWD----CTCPGIRYLSEW 230 (272)
T ss_dssp CCSSCBC----CCTTTTHHHHHH
T ss_pred ccCCCcc----ccCcHHHHHHHH
Confidence 9988632 346666665544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=3.2e-11 Score=104.05 Aligned_cols=210 Identities=13% Similarity=0.070 Sum_probs=139.0
Q ss_pred CCCCccEEEeeecccChHHHHHHHh--cCCCCCEEEEEcCCCC--Ceecc--CCCCCccEEEccccCCccc------c-c
Q 036679 8 TLSSLRELGLFKCAANDEAIRDIVA--GCPLIERLKIIDCRGL--KSLEF--LNLGKLSKFMVRNEDRLAR------V-S 74 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~~~--~~~~Le~L~L~~c~~l--~~l~~--~~l~~L~~L~l~~c~~l~~------~-~ 74 (294)
+-..++.|.+.++.+++..+..+.. .+++|++|++++|.-- ....+ ..+++|++|+++++.--.. . .
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3456889999999887765554432 4577999999998622 22223 5678999999999862111 1 1
Q ss_pred ccCCcccEEEeeCCCCC--cccccccccccceEEecccccChH-HHHH--HhcCCCCCcEEeecccccceeecc------
Q 036679 75 ICGPNVRLVDISSLHAP--CGINVALCKNLKELKLFKLSITNE-WLCN--QFSELPFLEYLEIFRCMKIRSIKI------ 143 (294)
Q Consensus 75 ~~~~~L~~L~l~~c~~~--~~~~~~~~~~L~~L~L~~~~i~~~-~l~~--l~~~~~~L~~L~l~~c~~l~~l~i------ 143 (294)
...++|++|++++|... .+..+..+++|++|+++++.+.+. .+.. .+..+++|++|++++|. ++.+..
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence 24789999999999843 224567889999999999986653 2322 23578999999999974 444321
Q ss_pred -cccccceEEeecccCceeee---cc---CCCccEEEEcCceeeee--cCccccceEEEEEEEeccChhHHHHHHHHHhc
Q 036679 144 -SSPYLKKLLVRFCNKLYEFK---LD---TPNLSVFDYEGDMVSFS--SNALALSETSLCLDSINVDNQWLVKFIELLAK 214 (294)
Q Consensus 144 -~~~~L~~L~l~~c~~l~~~~---~~---~p~L~~l~~~g~~~~~~--~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~ 214 (294)
..++|++|+++++......+ .. .++|++|+++++.+... ...++|+.+++....+... ..+..
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~--------~~~~~ 292 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA--------PQPDE 292 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC--------CCTTS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC--------chhhh
Confidence 12799999999987433222 12 27999999998876221 1235788887743322111 11456
Q ss_pred CcccceeEEEeee
Q 036679 215 LNHCSNVLNLECY 227 (294)
Q Consensus 215 l~~l~~LL~~~~~ 227 (294)
+++++.| .++.+
T Consensus 293 l~~L~~L-~L~~N 304 (310)
T 4glp_A 293 LPEVDNL-TLDGN 304 (310)
T ss_dssp CCCCSCE-ECSST
T ss_pred CCCccEE-ECcCC
Confidence 7778874 66544
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.15 E-value=9.1e-11 Score=99.38 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=121.5
Q ss_pred CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccC
Q 036679 4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICG 77 (294)
Q Consensus 4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~ 77 (294)
..+.++++|++|++++|.++.. ....+..+++|++|+++++. +..+. +.++++|++|+++++. .+... ....
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 123 (276)
T 2z62_A 46 YSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (276)
T ss_dssp TTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred hHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccC
Confidence 3667899999999999987541 12346789999999999885 43332 5678999999999886 22221 2246
Q ss_pred CcccEEEeeCCCCC---cccccccccccceEEecccccChH---HHHHHhcCCCCCc-EEeecccccceeecccc---cc
Q 036679 78 PNVRLVDISSLHAP---CGINVALCKNLKELKLFKLSITNE---WLCNQFSELPFLE-YLEIFRCMKIRSIKISS---PY 147 (294)
Q Consensus 78 ~~L~~L~l~~c~~~---~~~~~~~~~~L~~L~L~~~~i~~~---~l~~l~~~~~~L~-~L~l~~c~~l~~l~i~~---~~ 147 (294)
++|+.|+++++... .+..+..+++|++|+++++.+++. .+.. +.+.+.|. .|+++++. ++.+.... .+
T Consensus 124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~ 201 (276)
T 2z62_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNP-MNFIQPGAFKEIR 201 (276)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCEEEECCSSC-CCEECTTSSCSCC
T ss_pred CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhhccccceeeecCCCc-ccccCccccCCCc
Confidence 89999999999743 245677889999999999987652 2222 22344444 88988854 55543222 48
Q ss_pred cceEEeecccCceeee----ccCCCccEEEEcCcee
Q 036679 148 LKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 148 L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~ 179 (294)
|++|+++++. ++.++ ...++|+.+++.+++.
T Consensus 202 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 202 LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ccEEECCCCc-eeecCHhHhcccccccEEEccCCcc
Confidence 9999999987 44444 2468999999998865
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.15 E-value=2.8e-10 Score=97.31 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=110.7
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccE
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRL 82 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~ 82 (294)
+..+++|++|+|++|.+++-. . +..+++|++|+++++. +..+ .+..+++|++|++++|. .+.. ....++|+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~i~~~~~-l~~l~~L~~ 138 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLES 138 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCCCCCGG-GGGCTTCCE
T ss_pred HhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCcCCCChh-hcCCCCCCE
Confidence 567899999999999986522 2 7899999999999985 3333 25678999999999986 3322 225689999
Q ss_pred EEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc-c-ccccceEEeeccc
Q 036679 83 VDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI-S-SPYLKKLLVRFCN 157 (294)
Q Consensus 83 L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i-~-~~~L~~L~l~~c~ 157 (294)
|++++|.......+..+++|+.|+++++.+++.. . +..+++|+.|+++++. ++.++. . .++|+.|++++++
T Consensus 139 L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred EEccCCcCCcchhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 9999998544355778899999999999987632 2 7889999999999864 555432 2 2799999999886
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=4.9e-11 Score=105.20 Aligned_cols=146 Identities=12% Similarity=0.052 Sum_probs=83.4
Q ss_pred CCCccEEEeeecccCh---HHHHHHHhcCC-CCCEEEEEcCCCCCee---ccCC-----CCCccEEEccccCCcccc---
Q 036679 9 LSSLRELGLFKCAAND---EAIRDIVAGCP-LIERLKIIDCRGLKSL---EFLN-----LGKLSKFMVRNEDRLARV--- 73 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~---~~l~~~~~~~~-~Le~L~L~~c~~l~~l---~~~~-----l~~L~~L~l~~c~~l~~~--- 73 (294)
.++|++|+|++|.+++ ..+...+..++ +|++|++++|. +... .+.. +++|++|++++|. +...
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 4458888888887765 33335566777 78888888874 2111 1111 2678888888775 2111
Q ss_pred -----cccC-CcccEEEeeCCCCCcc--cc----ccc-ccccceEEecccccChHH---HHHHhcCCC-CCcEEeecccc
Q 036679 74 -----SICG-PNVRLVDISSLHAPCG--IN----VAL-CKNLKELKLFKLSITNEW---LCNQFSELP-FLEYLEIFRCM 136 (294)
Q Consensus 74 -----~~~~-~~L~~L~l~~c~~~~~--~~----~~~-~~~L~~L~L~~~~i~~~~---l~~l~~~~~-~L~~L~l~~c~ 136 (294)
.... ++|++|++++|.+... .. +.. +++|++|+++++.+++.+ +...+...+ +|+.|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 0112 6788888877763211 11 222 357788888877766532 333444555 78888877764
Q ss_pred cceeecc--------cc-cccceEEeeccc
Q 036679 137 KIRSIKI--------SS-PYLKKLLVRFCN 157 (294)
Q Consensus 137 ~l~~l~i--------~~-~~L~~L~l~~c~ 157 (294)
++.... .. ++|++|++++|.
T Consensus 179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 179 -LASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred -CchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 322211 01 367777777665
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=8e-11 Score=92.15 Aligned_cols=129 Identities=28% Similarity=0.315 Sum_probs=86.8
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--C-cccccccCCcccE
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--R-LARVSICGPNVRL 82 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~-l~~~~~~~~~L~~ 82 (294)
...++|+.|++++|.+++..++..+..+++|++|++++|. +..+ .+..+++|++|++++|. . +......+++|+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3457899999999988644455556788899999998885 3322 34567788888888875 2 2222223678888
Q ss_pred EEeeCCCCCc-c--cccccccccceEEecccccChHH--HHHHhcCCCCCcEEeecccc
Q 036679 83 VDISSLHAPC-G--INVALCKNLKELKLFKLSITNEW--LCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 83 L~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~i~~~~--l~~l~~~~~~L~~L~l~~c~ 136 (294)
|++++|.+.. + ..+..+++|+.|+++++.+++.. ....+..+++|+.|++++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8888876332 1 34567778888888887766531 12356677888888877765
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=4.2e-10 Score=105.73 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=111.3
Q ss_pred CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCccc
Q 036679 5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVR 81 (294)
Q Consensus 5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~ 81 (294)
.+..+++|+.|+|++|.+++-. . +..+++|+.|+|++|. +..+ .+..+++|+.|++++|. .+.. ...+++|+
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~ 134 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLE 134 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCS
T ss_pred HHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccC
Confidence 4677999999999999886522 1 7899999999999985 3322 35678999999999986 3322 23578999
Q ss_pred EEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecc-c-ccccceEEeecccC
Q 036679 82 LVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKI-S-SPYLKKLLVRFCNK 158 (294)
Q Consensus 82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i-~-~~~L~~L~l~~c~~ 158 (294)
.|++++|.+.....+..+++|+.|+|+++.+++. .. +..+++|+.|+|++|. ++.++. . .++|+.|++++|..
T Consensus 135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEEE
T ss_pred EEECCCCccCCchhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCcC
Confidence 9999999854445577889999999999988763 22 7889999999999864 454432 2 27899999998863
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=1.6e-10 Score=97.59 Aligned_cols=149 Identities=18% Similarity=0.143 Sum_probs=103.3
Q ss_pred CCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccC
Q 036679 4 TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICG 77 (294)
Q Consensus 4 ~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~ 77 (294)
..+..+++|++|+|++|.++. ....++..+++|++|+++++. +..+. +.++++|++|+++++. .+..- ....
T Consensus 55 ~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 132 (270)
T 2o6q_A 55 KAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132 (270)
T ss_dssp TSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred HHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC
Confidence 356789999999999998753 223345789999999999885 33332 4567899999999875 22211 2256
Q ss_pred CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceE
Q 036679 78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKL 151 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L 151 (294)
++|+.|++++|.+.. ...+..+++|++|+++++.+++. ....+.++++|+.|+++++ .++.+... .++|+.|
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEE
Confidence 899999999997432 23367889999999999987652 1234667899999999886 34444321 1345555
Q ss_pred Eeecc
Q 036679 152 LVRFC 156 (294)
Q Consensus 152 ~l~~c 156 (294)
++.++
T Consensus 211 ~l~~N 215 (270)
T 2o6q_A 211 QLQEN 215 (270)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 55443
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=4.7e-10 Score=94.50 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=82.9
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEE
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLV 83 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L 83 (294)
..+++|++|++++|.+++ ++ -+..+++|++|+++++. +..+ .+.++++|++|+++++. .+..+.. ++|+.|
T Consensus 38 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred hhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 346777777777776643 11 25667777777777764 2222 15566777777777764 2222221 677777
Q ss_pred EeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec-cc-ccccceEEeeccc
Q 036679 84 DISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK-IS-SPYLKKLLVRFCN 157 (294)
Q Consensus 84 ~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~-i~-~~~L~~L~l~~c~ 157 (294)
++++|.......+..+++|+.|+++++.+++- . .+..+++|+.|+++++. ++.+. +. .++|++|++++++
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 77777643333456667777777777766652 2 35567777777777643 33331 11 1466666666654
No 97
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=8.6e-11 Score=90.08 Aligned_cols=125 Identities=27% Similarity=0.327 Sum_probs=67.8
Q ss_pred CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCC---cccccccCCcccEE
Q 036679 8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDR---LARVSICGPNVRLV 83 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~---l~~~~~~~~~L~~L 83 (294)
.+++|+.|++++|.+++..++..+..+++|++|++++|. +..+ .+..+++|++|++++|.- +.......++|+.|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 457788888888877633444456777888888887763 3222 234556677777666641 11111124556666
Q ss_pred EeeCCCCCc-c--cccccccccceEEecccccChHHH--HHHhcCCCCCcEEeec
Q 036679 84 DISSLHAPC-G--INVALCKNLKELKLFKLSITNEWL--CNQFSELPFLEYLEIF 133 (294)
Q Consensus 84 ~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~i~~~~l--~~l~~~~~~L~~L~l~ 133 (294)
++++|.+.. + ..+..+++|++|+++++.+++... ...+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666555321 1 334455556666666655443210 1234455555555543
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.04 E-value=4.4e-10 Score=93.91 Aligned_cols=162 Identities=14% Similarity=0.057 Sum_probs=85.5
Q ss_pred CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCC--CCeeccCCCCCccEEEccccC--Cccc-ccccCCcccEEEe
Q 036679 11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRG--LKSLEFLNLGKLSKFMVRNED--RLAR-VSICGPNVRLVDI 85 (294)
Q Consensus 11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~--l~~l~~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L~l 85 (294)
+.+.++++++.++. ++. .-.+.++.|+++++.- +..-.+.++++|++|+++++. .+.. .....++|+.|++
T Consensus 15 ~~~~l~~~~~~l~~--~p~--~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDS--VPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSS--CCS--CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccc--cCC--CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45566666554421 111 1124566666666541 111123455666677666654 1111 1123466777777
Q ss_pred eCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeecccCc
Q 036679 86 SSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCNKL 159 (294)
Q Consensus 86 ~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~~l 159 (294)
+++.+.. +..+..+++|++|+++++.+++- ....+..+++|+.|+++++ .++.+... .++|++|+++++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l- 167 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQL- 167 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcC-
Confidence 7665321 12345667777777777766532 1223456677777777764 34444321 15777777777652
Q ss_pred eeee----ccCCCccEEEEcCcee
Q 036679 160 YEFK----LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 160 ~~~~----~~~p~L~~l~~~g~~~ 179 (294)
+.++ ...++|+.+++.++..
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CccCHHHHhCCCCCCEEEeeCCce
Confidence 2222 1346777777777654
No 99
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.96 E-value=3.2e-09 Score=90.70 Aligned_cols=189 Identities=14% Similarity=0.032 Sum_probs=114.4
Q ss_pred hcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCcccccccccccceEEe
Q 036679 32 AGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPCGINVALCKNLKELKL 107 (294)
Q Consensus 32 ~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L 107 (294)
++++++++++++++ ++..+...-.++++.|+++++. +..+ ....++|+.|+++++.+........+++|++|++
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred cccCCccEEECCCC-CCCcCCCCCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 45677888877664 3444432223578888888775 2111 2245778888888776432222356778888888
Q ss_pred cccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeecccCceeeec----cCCCccEEEEcCcee
Q 036679 108 FKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCNKLYEFKL----DTPNLSVFDYEGDMV 179 (294)
Q Consensus 108 ~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~~l~~~~~----~~p~L~~l~~~g~~~ 179 (294)
+++.++. ++..+..+++|+.|+++++. ++.+... .++|++|+++++. ++.++. ..++|+.|+++++.+
T Consensus 85 s~N~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 85 SHNQLQS--LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp CSSCCSS--CCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCcCCc--CchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcC
Confidence 8877653 34445667788888887743 4444321 1577777777764 333331 345666666665532
Q ss_pred eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCCCCCceEEEEEccc
Q 036679 180 SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPLTYENHVCFIINSE 257 (294)
Q Consensus 180 ~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f~~Lk~L~L~~~~~ 257 (294)
. .+ . ...+..+++|+. |.++.+....+|++ .....+|++|.|..|..
T Consensus 161 ~---------~l---------~-------~~~~~~l~~L~~-L~L~~N~l~~ip~~-----~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 161 T---------EL---------P-------AGLLNGLENLDT-LLLQENSLYTIPKG-----FFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp S---------CC---------C-------TTTTTTCTTCCE-EECCSSCCCCCCTT-----TTTTCCCSEEECCSCCB
T ss_pred C---------cc---------C-------HHHhcCcCCCCE-EECCCCcCCccChh-----hcccccCCeEEeCCCCc
Confidence 1 00 0 112345677777 58887777788887 34456899999987643
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.93 E-value=8.5e-10 Score=89.35 Aligned_cols=142 Identities=14% Similarity=0.112 Sum_probs=81.3
Q ss_pred CCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccCCcccE
Q 036679 9 LSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICGPNVRL 82 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~~~L~~ 82 (294)
.++|++|+++++.++. .....+..+++|++|+++++. +..+. +.++++|++|+++++. .+... ....++|+.
T Consensus 27 ~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 4678888888887753 122335677888888888763 33322 3456777788777764 11111 123567777
Q ss_pred EEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeeccc
Q 036679 83 VDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCN 157 (294)
Q Consensus 83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~ 157 (294)
|+++++.+.. +..+..+++|++|+++++.+++. ....+..+++|+.|++++++-. ...++|++|+++.+.
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWINK 176 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHHHHHH
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCee----cCCCCHHHHHHHHHh
Confidence 7777765321 12245667777777777765532 1233456677777777765321 122445555554443
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=5.3e-09 Score=88.03 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=96.0
Q ss_pred CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec-cCCCCCccEEEccccC--CcccccccCCccc
Q 036679 5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE-FLNLGKLSKFMVRNED--RLARVSICGPNVR 81 (294)
Q Consensus 5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~-~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~ 81 (294)
.+..+++|++|+|++|.+++-. . +..+++|++|+++++. +..+. +.. ++|++|++++|. .+.. ...+++|+
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~ 131 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKNLE 131 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTTCC
T ss_pred HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc-cCCcCcccc-CcccEEEccCCccCCChh-hcCccccc
Confidence 5677899999999999986522 2 7899999999999985 33332 233 899999999985 2322 22578999
Q ss_pred EEEeeCCCCCcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 82 LVDISSLHAPCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
.|++++|.......+..+++|++|+++++.+++. ..+..+++|+.|++++++
T Consensus 132 ~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 132 ILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred EEECCCCcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence 9999999854334577889999999999998874 457789999999999854
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.89 E-value=5.4e-09 Score=92.03 Aligned_cols=168 Identities=13% Similarity=0.098 Sum_probs=110.8
Q ss_pred CCCC-CccEEEeeecccCh---HHHHHHHhcC-CCCCEEEEEcCCCCCeec-------cCCC-CCccEEEccccCCcccc
Q 036679 7 VTLS-SLRELGLFKCAAND---EAIRDIVAGC-PLIERLKIIDCRGLKSLE-------FLNL-GKLSKFMVRNEDRLARV 73 (294)
Q Consensus 7 ~~l~-~Lk~L~L~~~~~~~---~~l~~~~~~~-~~Le~L~L~~c~~l~~l~-------~~~l-~~L~~L~l~~c~~l~~~ 73 (294)
..++ +|++|+|++|.+++ ..+...+... ++|++|++++|. +.... +..+ ++|++|++++|. +...
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~ 124 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK 124 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcH
Confidence 3566 89999999999876 3344444554 999999999986 22110 2234 789999999986 2221
Q ss_pred c-------c-c-CCcccEEEeeCCCCCcc------ccccccc-ccceEEecccccChH---HHHHHhcCCC-CCcEEeec
Q 036679 74 S-------I-C-GPNVRLVDISSLHAPCG------INVALCK-NLKELKLFKLSITNE---WLCNQFSELP-FLEYLEIF 133 (294)
Q Consensus 74 ~-------~-~-~~~L~~L~l~~c~~~~~------~~~~~~~-~L~~L~L~~~~i~~~---~l~~l~~~~~-~L~~L~l~ 133 (294)
. + . ..+|++|++++|.+... ..+...+ +|++|++++|.+++. .+...+..++ +|+.|+++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 1 1 1 35999999999974321 1223444 899999999988753 3455566774 99999999
Q ss_pred cccccee-----ecc--c--ccccceEEeecccCceeee--------ccCCCccEEEEcCce
Q 036679 134 RCMKIRS-----IKI--S--SPYLKKLLVRFCNKLYEFK--------LDTPNLSVFDYEGDM 178 (294)
Q Consensus 134 ~c~~l~~-----l~i--~--~~~L~~L~l~~c~~l~~~~--------~~~p~L~~l~~~g~~ 178 (294)
++. ++. +.. . .++|++|++++|. +++.. -..++|+.++++++.
T Consensus 205 ~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 205 ANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 875 433 111 1 1479999998875 32221 133566777666554
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.87 E-value=2.9e-09 Score=88.82 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=107.7
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccc-cccc
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLA-RVSI 75 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~-~~~~ 75 (294)
+|..+. +++++|+|+++.++.. ....+.++++|++|+++++. +..+. +.++++|++|+++++. .+. ....
T Consensus 29 ~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 104 (251)
T 3m19_A 29 VPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104 (251)
T ss_dssp CCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence 454443 6899999999988542 12346789999999999974 33322 4567899999999885 221 1122
Q ss_pred cCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccc
Q 036679 76 CGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLK 149 (294)
Q Consensus 76 ~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~ 149 (294)
..++|+.|+++++.+.. +..+..+++|++|+++++.+++. ....+..+++|+.|+++++. ++.+... .++|+
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCC
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCC
Confidence 56899999999997432 23357789999999999987752 22346788999999999864 5544321 26899
Q ss_pred eEEeeccc
Q 036679 150 KLLVRFCN 157 (294)
Q Consensus 150 ~L~l~~c~ 157 (294)
+|++++++
T Consensus 183 ~L~l~~N~ 190 (251)
T 3m19_A 183 TITLFGNQ 190 (251)
T ss_dssp EEECCSCC
T ss_pred EEEeeCCc
Confidence 99998875
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.82 E-value=7.6e-09 Score=85.16 Aligned_cols=121 Identities=13% Similarity=0.067 Sum_probs=62.4
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcccE
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVRL 82 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~ 82 (294)
++|++|+|++|.++.. .+..+..+++|++|+++++. +..+. +.++++|+.|+++++. +..+ ....++|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCe
Confidence 6677777777766431 12235566777777776664 33222 2345666666666653 2111 113455666
Q ss_pred EEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 83 VDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 83 L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
|+++++.+. .+..+..+++|++|+++++.++.- ....+..+++|+.|++.+
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTT
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeC
Confidence 666655522 122344555666666666554431 112344455566665554
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.81 E-value=7e-09 Score=84.88 Aligned_cols=118 Identities=19% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCCCCeec----cCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc--ccccccccccceE
Q 036679 36 LIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC--GINVALCKNLKEL 105 (294)
Q Consensus 36 ~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L 105 (294)
.+++|+++++. +..+. +.++++|++|+++++. +..+ ....++|+.|+++++.+.. +..+..+++|++|
T Consensus 33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 45566665553 33221 2345566666666553 1111 1134566666666665321 1234556666666
Q ss_pred EecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeeccc
Q 036679 106 KLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCN 157 (294)
Q Consensus 106 ~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~ 157 (294)
+++++.+++. .+..+..+++|+.|+++++. ++.+... .++|++|++++++
T Consensus 111 ~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 111 MLRSNRITCV-GNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ECTTSCCCCB-CTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCcCCeE-CHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 6666665432 12334456666666666632 3333111 1466666666543
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.80 E-value=5.1e-09 Score=98.37 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=81.7
Q ss_pred CCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcccE
Q 036679 10 SSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVRL 82 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~ 82 (294)
+++++|+|++|.++. ..+..+.++++|++|+|++| .++.+. +.++++|++|+++++. +..+ ....++|++
T Consensus 52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence 478888888887753 11233677888888888887 355442 4567788888888774 2222 124577888
Q ss_pred EEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 83 VDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 83 L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
|++++|.... +..++.+++|++|+++++.++...++..++.++.|+.|+++++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 8888876321 2346677888888888877654334455667788888887764
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.80 E-value=1.9e-08 Score=88.15 Aligned_cols=173 Identities=19% Similarity=0.141 Sum_probs=92.8
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCccccc----
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVS---- 74 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~~---- 74 (294)
+|.++ .+++++|+|++|.++. .....+.++++|++|+|+++.-++.+. +.++++++++.+.++..+..+.
T Consensus 24 iP~~l--~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 24 IPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp CCTTC--CTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred cCcCc--CCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 56554 4689999999998752 112346788999999999987555543 3456666665555444444331
Q ss_pred ccCCcccEEEeeCCCCCcc--cccccccccceEEeccc-ccChHHHHHHhcCC-CCCcEEeecccccceeecccc---cc
Q 036679 75 ICGPNVRLVDISSLHAPCG--INVALCKNLKELKLFKL-SITNEWLCNQFSEL-PFLEYLEIFRCMKIRSIKISS---PY 147 (294)
Q Consensus 75 ~~~~~L~~L~l~~c~~~~~--~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~-~~L~~L~l~~c~~l~~l~i~~---~~ 147 (294)
...++|+.|+++++..... ..+....++..+++.++ .+..-. ...+... ..++.|+++++ .++.+.... .+
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQ 178 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-TTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhcccccccccc-ccchhhcchhhhhhccccc-cccCCChhhccccc
Confidence 2457788888877763211 11222334455555442 222110 0111222 34555666552 344443221 45
Q ss_pred cceEEeecccCceeeec----cCCCccEEEEcCcee
Q 036679 148 LKKLLVRFCNKLYEFKL----DTPNLSVFDYEGDMV 179 (294)
Q Consensus 148 L~~L~l~~c~~l~~~~~----~~p~L~~l~~~g~~~ 179 (294)
|+.+.+.++..++.++- ..++|+.|+++++.+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 66666655555555542 234566666665544
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=1.9e-08 Score=93.64 Aligned_cols=167 Identities=16% Similarity=0.049 Sum_probs=108.1
Q ss_pred CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCCcccccccCCcccEEEeeCCCC
Q 036679 11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHA 90 (294)
Q Consensus 11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~ 90 (294)
+|+.|+|+++.+++ ++.- -+++|++|+++++. +..+. ..+++|++|+++++. +..+.....+|+.|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~--l~~~L~~L~Ls~N~-l~~ip-~~l~~L~~L~Ls~N~-l~~ip~l~~~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDN--LPPQITVLEITQNA-LISLP-ELPASLEYLDACDNR-LSTLPELPASLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSC--CCSC--CCTTCSEEECCSSC-CSCCC-CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC
T ss_pred CccEEEeCCCCCCc--cCHh--HcCCCCEEECcCCC-Ccccc-cccCCCCEEEccCCC-CCCcchhhcCCCEEECCCCcC
Confidence 78899999988754 3221 24789999998874 55555 556889999998874 222222223899999988874
Q ss_pred CcccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeecccCceeeeccCCCc-
Q 036679 91 PCGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCNKLYEFKLDTPNL- 169 (294)
Q Consensus 91 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~~l~~~~~~~p~L- 169 (294)
..... .+++|+.|++++|.+++ ++. .+++|+.|+++++. ++.++.-.++|++|+++++. ++.++.-.++|
T Consensus 133 ~~lp~--~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~-L~~lp~~~~~L~ 203 (571)
T 3cvr_A 133 TMLPE--LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNL-LESLPAVPVRNH 203 (571)
T ss_dssp SCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCC----
T ss_pred CCCCC--cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCC-CCchhhHHHhhh
Confidence 32111 57889999999888765 332 56889999998864 44443322789999998875 33443322266
Q ss_pred ------cEEEEcCceeee----ecCccccceEEE
Q 036679 170 ------SVFDYEGDMVSF----SSNALALSETSL 193 (294)
Q Consensus 170 ------~~l~~~g~~~~~----~~~~~~L~~~~i 193 (294)
+.|+++++.+.. +...++|+.+.+
T Consensus 204 ~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 204 HSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp ----CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred cccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 888888876521 223556766666
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.79 E-value=1.4e-08 Score=89.06 Aligned_cols=189 Identities=16% Similarity=0.104 Sum_probs=124.8
Q ss_pred CCC-CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-c
Q 036679 2 SPT-RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-S 74 (294)
Q Consensus 2 ~p~-~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~ 74 (294)
+|. .+.++++|++|+|++|.+.+......+.++++++++...++..+..+. +.++++|++|+++++. .+... .
T Consensus 45 i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence 454 467899999999999987432222346788898888887777887764 4568999999999875 22221 2
Q ss_pred ccCCcccEEEeeCCC-CC-c-ccccccc-cccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----c
Q 036679 75 ICGPNVRLVDISSLH-AP-C-GINVALC-KNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----P 146 (294)
Q Consensus 75 ~~~~~L~~L~l~~c~-~~-~-~~~~~~~-~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~ 146 (294)
....++..+++.++. .. . ...+... ..++.|+++++.++. ++........|+.|++.+++.++.++... +
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred cccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 234567788887754 21 1 1223333 468889999998764 33333345789999999888888876432 7
Q ss_pred ccceEEeecccCceeeecc-CCCccEEEEcCcee-e---eecCccccceEEE
Q 036679 147 YLKKLLVRFCNKLYEFKLD-TPNLSVFDYEGDMV-S---FSSNALALSETSL 193 (294)
Q Consensus 147 ~L~~L~l~~c~~l~~~~~~-~p~L~~l~~~g~~~-~---~~~~~~~L~~~~i 193 (294)
+|+.|+++++. ++.++.. ..+|+.|+..+... . .+...++|+.+.+
T Consensus 203 ~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 203 GPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp CCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred ccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 89999999885 5566543 45788887765532 1 1223345555544
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.79 E-value=1.1e-08 Score=83.61 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=24.6
Q ss_pred CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
++|+.|+++++.+.. +..+.++++|++|+++++.+++. ....+..+++|+.|++++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe-CHHHcCCCCCCCEEECCC
Confidence 445555555444211 11234445555555555544431 112234455555555554
No 111
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.79 E-value=7.8e-09 Score=81.44 Aligned_cols=127 Identities=19% Similarity=0.239 Sum_probs=80.5
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccCCcccc----cccCCcc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARV----SICGPNV 80 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L 80 (294)
...+++|+.|++++|.++. ++.+....++|+.|+++++. +..+ .+.++++|++|+++++. +..+ ...+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 3457889999999988753 23344445589999998874 4433 34566788888888774 2222 1245777
Q ss_pred cEEEeeCCCCCc-cc--ccccccccceEEecccccChH--HHHHHhcCCCCCcEEeecccc
Q 036679 81 RLVDISSLHAPC-GI--NVALCKNLKELKLFKLSITNE--WLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 81 ~~L~l~~c~~~~-~~--~~~~~~~L~~L~L~~~~i~~~--~l~~l~~~~~~L~~L~l~~c~ 136 (294)
+.|++++|.+.. +. .+..+++|+.|+++++.+++. .-...+..+++|+.|+++++.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 778777776421 21 455677777777777766531 112245667777777776654
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.70 E-value=2.4e-08 Score=93.72 Aligned_cols=237 Identities=13% Similarity=0.063 Sum_probs=124.7
Q ss_pred CCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCC---------------------CCCeeccCCCCCccEEEc
Q 036679 6 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCR---------------------GLKSLEFLNLGKLSKFMV 64 (294)
Q Consensus 6 ~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~---------------------~l~~l~~~~l~~L~~L~l 64 (294)
...+.+++.+.+.++.+.. +. -+..++.++.|++.++. .-.......+++|+.+++
T Consensus 302 ~~~~~~l~~l~~~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 302 FNCLTNVSSFSLVSVTIER--VK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 378 (635)
T ss_dssp TGGGTTCSEEEEESCEEEE--CG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEEC
T ss_pred hhhhccccccccccccccc--cc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchh
Confidence 3445667777776665422 11 13455667777776653 111111123456666666
Q ss_pred cccCCc--cc---ccccCCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccc
Q 036679 65 RNEDRL--AR---VSICGPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKI 138 (294)
Q Consensus 65 ~~c~~l--~~---~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l 138 (294)
+.+... .. ......+|+.+++..+... ....+..+++|+.+++..+......-...+..++.++.++++++. +
T Consensus 379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l 457 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-T 457 (635)
T ss_dssp CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-C
T ss_pred hccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccc-c
Confidence 554310 00 0113445666666555411 112344566777777766653322112234566777777777643 2
Q ss_pred eeeccc----ccccceEEeecccCceeee----ccCCCccEEEEcCceee-----eecCccccceEEEEEEEeccChhHH
Q 036679 139 RSIKIS----SPYLKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDMVS-----FSSNALALSETSLCLDSINVDNQWL 205 (294)
Q Consensus 139 ~~l~i~----~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~ 205 (294)
..+... .++|+.|+++++.....+. ...++|+.|+++++... .+.+.++|+.+.+.-..+....
T Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~--- 534 (635)
T 4g8a_A 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD--- 534 (635)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC---
T ss_pred ccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC---
Confidence 222111 1578888888776443221 34577888888877551 2345567777766322111111
Q ss_pred HHHHHHHhcCcccceeEEEeeeeeeecchhhhhccCCCC-CCCceEEEEEccc
Q 036679 206 VKFIELLAKLNHCSNVLNLECYAAAIIPRELREILSSPL-TYENHVCFIINSE 257 (294)
Q Consensus 206 ~~~~~~l~~l~~l~~LL~~~~~~~~~~p~~~~~~~~~~f-~~Lk~L~L~~~~~ 257 (294)
...++.+++|+. |+++.+....++++. ...+ .+|++|.|..|.+
T Consensus 535 ---~~~~~~l~~L~~-L~Ls~N~l~~~~~~~----l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 535 ---TFPYKCLNSLQV-LDYSLNHIMTSKKQE----LQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ---CGGGTTCTTCCE-EECTTSCCCBCCSSC----TTCCCTTCCEEECTTCCB
T ss_pred ---hhHHhCCCCCCE-EECCCCcCCCCCHHH----HHhhhCcCCEEEeeCCCC
Confidence 122456777777 588877666655431 3334 6899999987633
No 113
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.70 E-value=1.5e-08 Score=79.30 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=55.3
Q ss_pred CcccEEEeeCCCCCcc--cccccccccceEEeccc-ccChHHHHHHhcC---CCCCcEEeecccccceeecc----cccc
Q 036679 78 PNVRLVDISSLHAPCG--INVALCKNLKELKLFKL-SITNEWLCNQFSE---LPFLEYLEIFRCMKIRSIKI----SSPY 147 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~~--~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~l~~c~~l~~l~i----~~~~ 147 (294)
..|+.|++++|.+... ..+.+|++|++|+|++| .++|.++..+... |++|+.|++++|.++++-.+ ..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4577777777763221 22457778888888887 4777777766542 56788888888877665322 2367
Q ss_pred cceEEeecccCcee
Q 036679 148 LKKLLVRFCNKLYE 161 (294)
Q Consensus 148 L~~L~l~~c~~l~~ 161 (294)
|++|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 78888888777664
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.68 E-value=2.2e-08 Score=88.18 Aligned_cols=142 Identities=14% Similarity=0.107 Sum_probs=86.5
Q ss_pred CCccEEEeeecccChHHHHHHHh-cCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCccc
Q 036679 10 SSLRELGLFKCAANDEAIRDIVA-GCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVR 81 (294)
Q Consensus 10 ~~Lk~L~L~~~~~~~~~l~~~~~-~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~ 81 (294)
+.++.|+|++|.++.-. ...+. .+++|++|+++++. +..+. +.++++|++|+++++. +..+ ....++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 45788888888775411 12233 77888888888763 44432 4567788888888775 2222 12457788
Q ss_pred EEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHh---cCCCCCcEEeecccccceeecccc----cc--cce
Q 036679 82 LVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQF---SELPFLEYLEIFRCMKIRSIKISS----PY--LKK 150 (294)
Q Consensus 82 ~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~l~~l~i~~----~~--L~~ 150 (294)
.|++++|.+.. +..+..+++|+.|+|+++.++.-. ...+ ..+++|+.|+++++ .++.++... +. ++.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTT
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcce
Confidence 88888876432 234667788888888888766411 1122 45788888888874 355443221 22 466
Q ss_pred EEeecc
Q 036679 151 LLVRFC 156 (294)
Q Consensus 151 L~l~~c 156 (294)
|++.++
T Consensus 194 l~l~~N 199 (361)
T 2xot_A 194 LYLHNN 199 (361)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 777654
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.64 E-value=6.6e-08 Score=90.05 Aligned_cols=51 Identities=24% Similarity=0.186 Sum_probs=21.5
Q ss_pred ccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccccccceEEeeccc
Q 036679 101 NLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISSPYLKKLLVRFCN 157 (294)
Q Consensus 101 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~~~L~~L~l~~c~ 157 (294)
+|++|++++|.+++ ++. .+++|+.|+++++. ++.++...++|++|++++|.
T Consensus 121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQ 171 (571)
T ss_dssp TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCC--CCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCC
Confidence 45555555544433 221 34455555554432 22222222345555554443
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.60 E-value=8.5e-08 Score=73.13 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=69.5
Q ss_pred cCCCCCEEEEEcCCCC-Ceec--cCCCCCccEEEccccCCcccc--cccCCcccEEEeeCCCCCc--ccccccccccceE
Q 036679 33 GCPLIERLKIIDCRGL-KSLE--FLNLGKLSKFMVRNEDRLARV--SICGPNVRLVDISSLHAPC--GINVALCKNLKEL 105 (294)
Q Consensus 33 ~~~~Le~L~L~~c~~l-~~l~--~~~l~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L 105 (294)
..++|++|++++|.-- ..+. +..+++|++|++++|. +..+ ....++|+.|++++|.... +..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3467999999988521 1222 3567888999988875 2222 2246788888888887432 2334457888888
Q ss_pred EecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 106 KLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 106 ~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
+++++.+++......+..+++|+.|+++++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 8888887764333557778888888888764
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.60 E-value=3.6e-08 Score=79.65 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=89.5
Q ss_pred CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccc-cccCC
Q 036679 5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARV-SICGP 78 (294)
Q Consensus 5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~-~~~~~ 78 (294)
.+..+++|++|++++|.++. .....+..+++|++|+++++. +..+. +.++++|++|+++++. .+..- ....+
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 124 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT 124 (208)
T ss_dssp TTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC
Confidence 35689999999999998853 223346789999999999984 33332 4567899999999885 22211 22468
Q ss_pred cccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 79 NVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 79 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
+|+.|+++++.+.. +..+..+++|++|+++++.+. ..|+.|+.|+++.+.
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINK 176 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHH
T ss_pred cCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHh
Confidence 99999999997432 233677899999999998654 357888888877643
No 118
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.59 E-value=3.8e-08 Score=77.07 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=30.5
Q ss_pred ccccceEEeccc-ccChHHHHHHhcCCCCCcEEeecccccceee
Q 036679 99 CKNLKELKLFKL-SITNEWLCNQFSELPFLEYLEIFRCMKIRSI 141 (294)
Q Consensus 99 ~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l 141 (294)
+++|++|++++| .++|.++..+ .+|++|+.|++++|+.++..
T Consensus 113 ~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 113 QKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCch
Confidence 456777777776 4777777664 46788888888888877653
No 119
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=1.1e-07 Score=83.70 Aligned_cols=126 Identities=16% Similarity=0.080 Sum_probs=65.4
Q ss_pred CCCCccEEEeeecccC--------hHHHHHHHhcCCCCCEEEEEcCCCCCeeccCCCCCccEEEccccCC----ccccc-
Q 036679 8 TLSSLRELGLFKCAAN--------DEAIRDIVAGCPLIERLKIIDCRGLKSLEFLNLGKLSKFMVRNEDR----LARVS- 74 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~--------~~~l~~~~~~~~~Le~L~L~~c~~l~~l~~~~l~~L~~L~l~~c~~----l~~~~- 74 (294)
++++|+.|.+.+.... ...+..++..+|+|++|+++++.+++.-.+. .++|++|++..|.- +..+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHH
Confidence 4667777777554221 1135556677777777777766433221222 46777777765541 11111
Q ss_pred ccCCcccEEEeeCCC---C-C--c-----ccccccccccceEEecccccChHHHHHHh--cCCCCCcEEeecc
Q 036679 75 ICGPNVRLVDISSLH---A-P--C-----GINVALCKNLKELKLFKLSITNEWLCNQF--SELPFLEYLEIFR 134 (294)
Q Consensus 75 ~~~~~L~~L~l~~c~---~-~--~-----~~~~~~~~~L~~L~L~~~~i~~~~l~~l~--~~~~~L~~L~l~~ 134 (294)
...|+|+.|+++.+. . . . ......+|+|+.|.+.++.+++.....+. ..+|.|+.|+++.
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 135677777764211 0 0 0 01112466777777777666554333222 2356677777754
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.55 E-value=7e-08 Score=75.16 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=81.2
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccC--Cccc--ccc
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNED--RLAR--VSI 75 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~--~l~~--~~~ 75 (294)
+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.--..+. +..+++|++|++++|. .+.. ...
T Consensus 41 i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp CSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred HHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 566678899999999999988643 457889999999999986322121 2347899999999986 2221 123
Q ss_pred cCCcccEEEeeCCCCCc-c----cccccccccceEEecccccC
Q 036679 76 CGPNVRLVDISSLHAPC-G----INVALCKNLKELKLFKLSIT 113 (294)
Q Consensus 76 ~~~~L~~L~l~~c~~~~-~----~~~~~~~~L~~L~L~~~~i~ 113 (294)
.+++|+.|++++|.+.. + ..+..+++|++|++.++.+.
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 57899999999997322 2 24678899999999988654
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.55 E-value=6.2e-09 Score=83.65 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=66.0
Q ss_pred HHHHhcCCCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCCCcccccccccccce
Q 036679 28 RDIVAGCPLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKE 104 (294)
Q Consensus 28 ~~~~~~~~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~ 104 (294)
+..+..+++|++|+++++. +..+ .+.++++|+.|++++|. .+......+++|+.|++++|.+.....+..+++|++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~ 119 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119 (198)
T ss_dssp HHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSE
T ss_pred hHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCE
Confidence 3356778888888887763 2222 33456778888887764 222212234677777777776432224556677778
Q ss_pred EEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 105 LKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 105 L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
|+++++.+++-.....+..+++|+.|++++++
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 88777777653222345667777777777754
No 122
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.52 E-value=3.1e-08 Score=87.55 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=102.2
Q ss_pred CCCccEEEeeecccChHHHH---HHHh-cCCCCCEEEEEcCCCCCe--e-c-cCCCCCccEEEccccCCccc-----cc-
Q 036679 9 LSSLRELGLFKCAANDEAIR---DIVA-GCPLIERLKIIDCRGLKS--L-E-FLNLGKLSKFMVRNEDRLAR-----VS- 74 (294)
Q Consensus 9 l~~Lk~L~L~~~~~~~~~l~---~~~~-~~~~Le~L~L~~c~~l~~--l-~-~~~l~~L~~L~l~~c~~l~~-----~~- 74 (294)
.++|++|+|++|.+++.... ..+. .+++|++|++++|. +.. . . ...+++|++|++++|. +.. +.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence 46899999999999874443 3333 34799999999985 321 1 0 1234689999999985 221 11
Q ss_pred ---ccCCcccEEEeeCCCCCcc------cccccccccceEEecccccChHHH---HHHhcCCCCCcEEeecccccceeec
Q 036679 75 ---ICGPNVRLVDISSLHAPCG------INVALCKNLKELKLFKLSITNEWL---CNQFSELPFLEYLEIFRCMKIRSIK 142 (294)
Q Consensus 75 ---~~~~~L~~L~l~~c~~~~~------~~~~~~~~L~~L~L~~~~i~~~~l---~~l~~~~~~L~~L~l~~c~~l~~l~ 142 (294)
...++|++|++++|.+... ..+..+++|++|+|++|.+++.+. ...+..++.|+.|++++|. ++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence 1357899999999974321 123567899999999999887654 4456778899999999974 43321
Q ss_pred ---c-----cccccceEEeeccc
Q 036679 143 ---I-----SSPYLKKLLVRFCN 157 (294)
Q Consensus 143 ---i-----~~~~L~~L~l~~c~ 157 (294)
+ ..++|++|++++|.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHhCCCCCEEeccCCC
Confidence 1 12689999999986
No 123
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=3.2e-08 Score=87.47 Aligned_cols=167 Identities=10% Similarity=0.056 Sum_probs=106.8
Q ss_pred CCCccEEEeeecc--cChHHHHHHHhcCCCCCEEEEEcCCCCCe-----ec--c-CCCCCccEEEccccCC----ccccc
Q 036679 9 LSSLRELGLFKCA--ANDEAIRDIVAGCPLIERLKIIDCRGLKS-----LE--F-LNLGKLSKFMVRNEDR----LARVS 74 (294)
Q Consensus 9 l~~Lk~L~L~~~~--~~~~~l~~~~~~~~~Le~L~L~~c~~l~~-----l~--~-~~l~~L~~L~l~~c~~----l~~~~ 74 (294)
++..+.+++..|- +.++.+.. ...+.|++|++++|. +.. +. + ...++|++|++++|.- +..+.
T Consensus 46 ~~~~~~lnl~~cl~e~~~~~l~~--~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 122 (372)
T 3un9_A 46 LPPSELLDHLFFHYEFQNQRFSA--EVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL 122 (372)
T ss_dssp SCHHHHHHHHHHHHHHHTHHHHH--HHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH
T ss_pred CChhhhHHHHHHHHHhcCHHHHH--HHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH
Confidence 3444555555552 22233332 234689999999986 221 11 1 2336899999999851 12222
Q ss_pred ccCCcccEEEeeCCCCCcc--cc----c-ccccccceEEecccccChHHH---HHHhcCCCCCcEEeecccccceeec--
Q 036679 75 ICGPNVRLVDISSLHAPCG--IN----V-ALCKNLKELKLFKLSITNEWL---CNQFSELPFLEYLEIFRCMKIRSIK-- 142 (294)
Q Consensus 75 ~~~~~L~~L~l~~c~~~~~--~~----~-~~~~~L~~L~L~~~~i~~~~l---~~l~~~~~~L~~L~l~~c~~l~~l~-- 142 (294)
...++|+.|++++|.+... .. + ...++|++|+|++|.+++.+. ...+..+++|+.|++++|. ++...
T Consensus 123 ~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~ 201 (372)
T 3un9_A 123 PVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLE 201 (372)
T ss_dssp HHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHH
T ss_pred HHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHH
Confidence 2346899999999975422 11 1 245789999999999887543 4445778999999999875 43221
Q ss_pred -----c-cccccceEEeecccCce----eee---ccCCCccEEEEcCcee
Q 036679 143 -----I-SSPYLKKLLVRFCNKLY----EFK---LDTPNLSVFDYEGDMV 179 (294)
Q Consensus 143 -----i-~~~~L~~L~l~~c~~l~----~~~---~~~p~L~~l~~~g~~~ 179 (294)
+ ..++|+.|++++|..-. .+. ...++|++|+++++.+
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 1 12589999999986321 111 2468999999998865
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.44 E-value=4.3e-07 Score=74.54 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=81.6
Q ss_pred CCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--CcccccccC
Q 036679 3 PTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARVSICG 77 (294)
Q Consensus 3 p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~~~~~ 77 (294)
|..+..+++|++|+|++|.+.. .....+..+++|+.|+++++. +..+. +..+++|++|+++++. .+.......
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 134 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL 134 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGC
T ss_pred HHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCcccccCcccccC
Confidence 5567789999999999998843 122346789999999999984 44432 4568999999999885 222112356
Q ss_pred CcccEEEeeCCCCCc--ccccccccccceEEecccccC
Q 036679 78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSIT 113 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~ 113 (294)
++|+.|+++++.+.. ...+..+++|+.|++.++.+.
T Consensus 135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 899999999997432 234678899999999999765
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.42 E-value=4.6e-07 Score=73.92 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=47.0
Q ss_pred CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceE
Q 036679 78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKL 151 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L 151 (294)
++|+.|+++++.+.. +..+.++++|++|+++++.++.- ....+.++++|+.|+++++. ++.+... .++|++|
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEE
Confidence 455555555554221 12345556666666666655431 11234455666666666532 3333211 1456666
Q ss_pred EeecccCceeee----ccCCCccEEEEcCce
Q 036679 152 LVRFCNKLYEFK----LDTPNLSVFDYEGDM 178 (294)
Q Consensus 152 ~l~~c~~l~~~~----~~~p~L~~l~~~g~~ 178 (294)
+++++.. +.++ ...++|+.+++.+++
T Consensus 134 ~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 134 SLYDNKL-QTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcC-CEECHHHHhCCCCCCEEEeCCCC
Confidence 6666542 2222 124455566655554
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.35 E-value=3.9e-07 Score=84.98 Aligned_cols=101 Identities=15% Similarity=0.065 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCCCCee-ccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCCCcccccccccccceEEecccc
Q 036679 35 PLIERLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKELKLFKLS 111 (294)
Q Consensus 35 ~~Le~L~L~~c~~l~~l-~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~L~~L~L~~~~ 111 (294)
..|+.|+++++. +..+ .+.++++|+.|+++++. .+.......++|+.|++++|.+.....++.+++|++|++++|.
T Consensus 441 ~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp TTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred cCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence 368888888874 3322 25567889999998875 2222223568899999998874322267788899999999988
Q ss_pred cChHHHHHHhcCCCCCcEEeecccc
Q 036679 112 ITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 112 i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
+++...+..+..+++|+.|++++++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 7763215567788999999998854
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.35 E-value=5.6e-07 Score=70.63 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=59.1
Q ss_pred hcCCCCCEEEEEcCCCCCeec-cCCC-CCccEEEccccCCcccc--cccCCcccEEEeeCCCCCc-c-cccccccccceE
Q 036679 32 AGCPLIERLKIIDCRGLKSLE-FLNL-GKLSKFMVRNEDRLARV--SICGPNVRLVDISSLHAPC-G-INVALCKNLKEL 105 (294)
Q Consensus 32 ~~~~~Le~L~L~~c~~l~~l~-~~~l-~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~~~-~-~~~~~~~~L~~L 105 (294)
..+++|++|++++|. +..+. +..+ ++|+.|+++++. +..+ ....++|+.|++++|.+.. + ..+..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 356778888888774 32221 2222 377778777764 2222 1235677777777776331 1 123566777777
Q ss_pred EecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 106 KLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 106 ~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
+++++.+++-.-...+..+++|+.|++++++
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 7777766541111135567777777777654
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.34 E-value=5.9e-07 Score=73.27 Aligned_cols=131 Identities=13% Similarity=0.162 Sum_probs=96.7
Q ss_pred CCCCCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC--Cccc-ccc
Q 036679 2 SPTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED--RLAR-VSI 75 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~--~l~~-~~~ 75 (294)
+|..+ .+.+++|+|++|.++.......+..+++|++|+++++. +..+ .+.++++|++|+++++. .+.. ...
T Consensus 26 iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 26 IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhc
Confidence 45433 45689999999988643223346889999999999885 4444 25678999999999886 2222 122
Q ss_pred cCCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 76 CGPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 76 ~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
..++|++|+++++.+.. +..+..+++|++|+++++.+++. .+..+..+++|+.|++++.+
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcC
Confidence 57899999999998432 34567889999999999987753 24557789999999999854
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.34 E-value=5.3e-07 Score=71.91 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCCCeec----cCCCCCccEEEccccC--Cccc-ccccCCcccEEEeeCCCCCc--ccccccccccceEE
Q 036679 36 LIERLKIIDCRGLKSLE----FLNLGKLSKFMVRNED--RLAR-VSICGPNVRLVDISSLHAPC--GINVALCKNLKELK 106 (294)
Q Consensus 36 ~Le~L~L~~c~~l~~l~----~~~l~~L~~L~l~~c~--~l~~-~~~~~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~ 106 (294)
++++|+++++. +..+. +..+++|++|+++++. .+.. .....++|+.|+++++.+.. +..+..+++|++|+
T Consensus 30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 56666665553 22211 2345566666666553 1111 11134566666666665321 12245566677777
Q ss_pred ecccccChHHHHHHhcCCCCCcEEeeccc
Q 036679 107 LFKLSITNEWLCNQFSELPFLEYLEIFRC 135 (294)
Q Consensus 107 L~~~~i~~~~l~~l~~~~~~L~~L~l~~c 135 (294)
++++.+++. .+..+..+++|+.|++++.
T Consensus 109 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 109 LYDNQISCV-MPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCSSCCCEE-CTTSSTTCTTCCEEECTTC
T ss_pred CCCCcCCee-CHHHhhcCCCCCEEEeCCC
Confidence 777665542 2333455667777776664
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=9.2e-09 Score=82.62 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=89.2
Q ss_pred CCCCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec--cCCCCCccEEEccccCCcccc--cccCCcc
Q 036679 5 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARV--SICGPNV 80 (294)
Q Consensus 5 ~~~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~--~~~l~~L~~L~l~~c~~l~~~--~~~~~~L 80 (294)
.+..+++|++|+|++|.+++ ++ .+..+++|+.|++++|. +..+. +..+++|++|++++|. +..+ ...+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCCccccCCCC
Confidence 56678999999999998865 33 56788999999999984 32222 2234789999999885 2222 1245789
Q ss_pred cEEEeeCCCCCc-c--cccccccccceEEecccccChH---------HHHHHhcCCCCCcEEe
Q 036679 81 RLVDISSLHAPC-G--INVALCKNLKELKLFKLSITNE---------WLCNQFSELPFLEYLE 131 (294)
Q Consensus 81 ~~L~l~~c~~~~-~--~~~~~~~~L~~L~L~~~~i~~~---------~l~~l~~~~~~L~~L~ 131 (294)
+.|++++|.+.. + ..+..+++|++|+++++.+++. .....+..+++|+.|+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999987542 2 2467889999999999987543 1233467789999987
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.28 E-value=1.5e-06 Score=69.44 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=28.0
Q ss_pred CCcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 77 GPNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
.++|+.|+++++.+.. +..+..+++|++|+++++.++.- ....+..+++|+.|++++
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCS
T ss_pred CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCC
Confidence 3455555555554221 12344556666666666655431 112344556666666655
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.28 E-value=7.8e-07 Score=78.14 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=87.9
Q ss_pred CCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcc
Q 036679 8 TLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNV 80 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L 80 (294)
.+++|++|+|++|.++.- ....+..+++|++|+++++. +..+. +.++++|++|+++++. +..+ ....++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL 138 (361)
T ss_dssp CCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred cccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence 799999999999988641 12346789999999999985 55542 4578999999999886 2222 2246899
Q ss_pred cEEEeeCCCCCc-cc-cc---ccccccceEEecccccChHHHHHHhcCCCC--CcEEeeccc
Q 036679 81 RLVDISSLHAPC-GI-NV---ALCKNLKELKLFKLSITNEWLCNQFSELPF--LEYLEIFRC 135 (294)
Q Consensus 81 ~~L~l~~c~~~~-~~-~~---~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~--L~~L~l~~c 135 (294)
+.|++++|.+.. +. .+ ..+++|+.|+|+++.++.-.. ..+..++. ++.|++.+.
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSS
T ss_pred CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCC
Confidence 999999997432 22 22 568999999999998775322 22344565 477888773
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=4e-06 Score=72.53 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=47.5
Q ss_pred HHHhcCCCCCcEEeecccccceeecccc----cccceEEeecccCceeee----ccCCCcc-EEEEcCcee----eeecC
Q 036679 118 CNQFSELPFLEYLEIFRCMKIRSIKISS----PYLKKLLVRFCNKLYEFK----LDTPNLS-VFDYEGDMV----SFSSN 184 (294)
Q Consensus 118 ~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L~~L~l~~c~~l~~~~----~~~p~L~-~l~~~g~~~----~~~~~ 184 (294)
..+...|++|+.+++.++. ++.++-.. .+|+.+++.+. ++.++ .++++|+ ++.+..... ..+.+
T Consensus 219 ~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~ 295 (329)
T 3sb4_A 219 KLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMG 295 (329)
T ss_dssp HHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTT
T ss_pred HHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhC
Confidence 3333458888998888643 66655432 68888888663 55555 3567788 888865321 34567
Q ss_pred ccccceEEE
Q 036679 185 ALALSETSL 193 (294)
Q Consensus 185 ~~~L~~~~i 193 (294)
+.+|+.+.+
T Consensus 296 c~~L~~l~l 304 (329)
T 3sb4_A 296 CDNLRYVLA 304 (329)
T ss_dssp CTTEEEEEE
T ss_pred CccCCEEEe
Confidence 778888876
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.22 E-value=2.8e-06 Score=66.56 Aligned_cols=118 Identities=15% Similarity=0.089 Sum_probs=62.0
Q ss_pred ccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcccEEE
Q 036679 12 LRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVRLVD 84 (294)
Q Consensus 12 Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~ 84 (294)
.+.++++++.++. ++ ....++|++|+++++. +..+. +.++++|++|+++++. +..+ ....++|+.|+
T Consensus 9 ~~~l~~~~~~l~~--~p--~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLTS--VP--TGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCSS--CC--TTCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCcc--CC--CCCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEE
Confidence 3555555554432 11 1123566666666653 22221 2345666666666653 1111 12356677777
Q ss_pred eeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 85 ISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 85 l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
++++.+.. +..+..+++|++|+++++.++.- ....+..+++|+.|++++++
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence 77665321 12245667777777777766532 12234556777777777653
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=4.4e-06 Score=72.26 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=64.0
Q ss_pred ccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeecccc----cccc-eEEeecccCceeee----ccCCCc
Q 036679 99 CKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKISS----PYLK-KLLVRFCNKLYEFK----LDTPNL 169 (294)
Q Consensus 99 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~~----~~L~-~L~l~~c~~l~~~~----~~~p~L 169 (294)
|++|+++++.++.++.- -...+.+|++|+.+++.+ +++.+.-.. ++|+ .+.+.+ .++.++ .++++|
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 78999999998765531 123578899999999987 376665433 6798 999877 566665 357899
Q ss_pred cEEEEcCcee-----eeecCccccceEE
Q 036679 170 SVFDYEGDMV-----SFSSNALALSETS 192 (294)
Q Consensus 170 ~~l~~~g~~~-----~~~~~~~~L~~~~ 192 (294)
+++.+.+..+ ..+.++++|+.+.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 9999876654 2455677777664
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.16 E-value=9.9e-07 Score=70.31 Aligned_cols=100 Identities=11% Similarity=0.173 Sum_probs=40.2
Q ss_pred CccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEE
Q 036679 11 SLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLV 83 (294)
Q Consensus 11 ~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L 83 (294)
+|++|++++|.++.-.....+..+++|++|+++++. +..+ .+.++++|++|+++++. +..+ ....++|+.|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEE
Confidence 455555555544321111123444555555555442 2111 12334455555555443 1111 1123445555
Q ss_pred EeeCCCCCc--ccccccccccceEEeccccc
Q 036679 84 DISSLHAPC--GINVALCKNLKELKLFKLSI 112 (294)
Q Consensus 84 ~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i 112 (294)
+++++.+.. +..+..+++|++|+++++.+
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 555544221 12233444555555555443
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.15 E-value=1.4e-06 Score=83.64 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=25.1
Q ss_pred CCcccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 77 GPNVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 77 ~~~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
.++|+.|++++|.+. .+..+..+++|++|+|++|.++. ++..+.++++|+.|+|++
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEECCS
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEECCC
Confidence 344555555544422 12223444555555555554441 333344445555555554
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.12 E-value=1.9e-06 Score=82.65 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=63.8
Q ss_pred HHHhcCCCCCEEEEEcCCCCCee--ccCCCCCccEEEccccC--CcccccccCCcccEEEeeCCCCC-cccccccccccc
Q 036679 29 DIVAGCPLIERLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAP-CGINVALCKNLK 103 (294)
Q Consensus 29 ~~~~~~~~Le~L~L~~c~~l~~l--~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~L~ 103 (294)
..+..++.|+.|+|+++. +..+ .+.++++|++|+++++. .+......+++|+.|++++|.+. .+..++.+++|+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp ----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 345667778888877764 2222 13356777777777764 12111124567888888777633 234466777788
Q ss_pred eEEecccccChHHHHHHhcCCCCCcEEeecccc
Q 036679 104 ELKLFKLSITNEWLCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 104 ~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 136 (294)
+|+|++|.++. ++..+.++++|+.|+|+++.
T Consensus 297 ~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EEECCSSCCCC--CCSSTTSCTTCCCEECTTSC
T ss_pred EEECCCCCCCc--cChhhhcCCCccEEeCCCCc
Confidence 88888777653 44446677788888887754
No 139
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=8.6e-06 Score=64.48 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=67.9
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCe-----e--ccCCCCCccEEEccccCCccc-----c---cccCCcccEEEeeCCC
Q 036679 25 EAIRDIVAGCPLIERLKIIDCRGLKS-----L--EFLNLGKLSKFMVRNEDRLAR-----V---SICGPNVRLVDISSLH 89 (294)
Q Consensus 25 ~~l~~~~~~~~~Le~L~L~~c~~l~~-----l--~~~~l~~L~~L~l~~c~~l~~-----~---~~~~~~L~~L~l~~c~ 89 (294)
+.+...+..++.|++|++++|..+.. + .+...++|++|++++|. +.+ + ....++|++|++++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 55666777788888888877733321 1 12334677777777764 211 1 1134677778877776
Q ss_pred CCcc------cccccccccceEEe--cccccChHH---HHHHhcCCCCCcEEeecccc
Q 036679 90 APCG------INVALCKNLKELKL--FKLSITNEW---LCNQFSELPFLEYLEIFRCM 136 (294)
Q Consensus 90 ~~~~------~~~~~~~~L~~L~L--~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~ 136 (294)
+... ..+...++|++|++ .++.+++++ +...+..++.|+.|+++++.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4321 22445567888888 677777754 34445566778888887653
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.08 E-value=1.4e-05 Score=63.65 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=43.0
Q ss_pred cccEEEeeCCCCC-cccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEe
Q 036679 79 NVRLVDISSLHAP-CGINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLV 153 (294)
Q Consensus 79 ~L~~L~l~~c~~~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l 153 (294)
+|+.|+++++.+. .+..+..+++|++|+++++.+++. ....+.++++|+.|+++++. ++.+... .++|++|++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 4444444444321 112334445555555555544431 11223445555555555432 3333211 145555555
Q ss_pred ecccCceeeec----cCCCccEEEEcCcee
Q 036679 154 RFCNKLYEFKL----DTPNLSVFDYEGDMV 179 (294)
Q Consensus 154 ~~c~~l~~~~~----~~p~L~~l~~~g~~~ 179 (294)
+++. ++.++. ..++|+.+++.+++.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 5543 222221 245666777666644
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.07 E-value=1.5e-05 Score=62.36 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=33.4
Q ss_pred ccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeecccCceeee----ccCCC
Q 036679 97 ALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFCNKLYEFK----LDTPN 168 (294)
Q Consensus 97 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~~l~~~~----~~~p~ 168 (294)
..+++|++|+++++.++.. ....+..+++|+.|+++++. ++.+... .++|++|+++++. ++.++ ...++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~ 125 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTS 125 (177)
T ss_dssp TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred cCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcc
Confidence 3444555555555444321 11123344555555555432 2222211 1345555555443 22222 12455
Q ss_pred ccEEEEcCce
Q 036679 169 LSVFDYEGDM 178 (294)
Q Consensus 169 L~~l~~~g~~ 178 (294)
|+.+++.++.
T Consensus 126 L~~L~l~~N~ 135 (177)
T 2o6r_A 126 LQKIWLHTNP 135 (177)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEecCCC
Confidence 6666666553
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.05 E-value=1.1e-05 Score=75.22 Aligned_cols=140 Identities=16% Similarity=0.074 Sum_probs=93.7
Q ss_pred HHHhcCCCCCEEE-EEcCC--CCCeec-----cCC--CCCccEEEccccC--CcccccccCCcccEEEeeCCCCC-cccc
Q 036679 29 DIVAGCPLIERLK-IIDCR--GLKSLE-----FLN--LGKLSKFMVRNED--RLARVSICGPNVRLVDISSLHAP-CGIN 95 (294)
Q Consensus 29 ~~~~~~~~Le~L~-L~~c~--~l~~l~-----~~~--l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~~-~~~~ 95 (294)
..++.+++|+.|+ ++... .+..+. +.. ...|+.|+++++. .+.. ...+++|+.|++++|.+. .+..
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~ 481 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA 481 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchh
Confidence 3456778888887 33321 111111 110 1368899999875 3333 234679999999999843 3456
Q ss_pred cccccccceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec--c--c-ccccceEEeecccCceeee------c
Q 036679 96 VALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK--I--S-SPYLKKLLVRFCNKLYEFK------L 164 (294)
Q Consensus 96 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~--i--~-~~~L~~L~l~~c~~l~~~~------~ 164 (294)
++.+++|+.|+++++.+++ ++ .++++++|+.|+++++. ++.+. . . .++|+.|+++++..-...+ -
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred hhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 7889999999999999886 45 57889999999999854 55542 1 1 2799999999987432211 2
Q ss_pred cCCCccEEE
Q 036679 165 DTPNLSVFD 173 (294)
Q Consensus 165 ~~p~L~~l~ 173 (294)
..|+|+.|+
T Consensus 558 ~lp~L~~L~ 566 (567)
T 1dce_A 558 MLPSVSSIL 566 (567)
T ss_dssp HCTTCSEEE
T ss_pred HCcccCccC
Confidence 367777764
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=2.7e-05 Score=68.37 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=81.7
Q ss_pred CCCCccEEEeeecc-cChHHHHHHHhcCCCCCEEEEEcCCC----CCeeccCCCCCccEEEccccC-------Ccccc--
Q 036679 8 TLSSLRELGLFKCA-ANDEAIRDIVAGCPLIERLKIIDCRG----LKSLEFLNLGKLSKFMVRNED-------RLARV-- 73 (294)
Q Consensus 8 ~l~~Lk~L~L~~~~-~~~~~l~~~~~~~~~Le~L~L~~c~~----l~~l~~~~l~~L~~L~l~~c~-------~l~~~-- 73 (294)
.+|+|+.|+|+++. +. +.. + ..++|++|++..|.- +..+....+|+|++|+++.+. .+..+
T Consensus 170 ~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp TCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred cCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 46899999998873 21 111 2 378899999987641 112222357889999885321 12111
Q ss_pred -c--ccCCcccEEEeeCCCCCcc-----cccccccccceEEecccccChHHHHHHh---cCCCCCcEEeecccc
Q 036679 74 -S--ICGPNVRLVDISSLHAPCG-----INVALCKNLKELKLFKLSITNEWLCNQF---SELPFLEYLEIFRCM 136 (294)
Q Consensus 74 -~--~~~~~L~~L~l~~c~~~~~-----~~~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~ 136 (294)
. ..+|+|+.|++.+|..... .....+++|++|+|+.+.+++.+...+. .++++|+.|++++|.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1 1368999999998874311 1123578999999999999887655543 457999999998874
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.79 E-value=0.00013 Score=64.88 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=62.2
Q ss_pred CCCCCccEEEccccC-CcccccccCCcccEEEeeCCCCCc-ccccccccccceEEecccccChH----HHHHHhcCCCCC
Q 036679 54 LNLGKLSKFMVRNED-RLARVSICGPNVRLVDISSLHAPC-GINVALCKNLKELKLFKLSITNE----WLCNQFSELPFL 127 (294)
Q Consensus 54 ~~l~~L~~L~l~~c~-~l~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~~i~~~----~l~~l~~~~~~L 127 (294)
.+|++|+.+++...- .+..-.+...+|+.+.+...-... ...+.+|++|+.+.+.++.+... --...+.+|++|
T Consensus 223 ~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 223 LKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp TTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred hCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 345666666665421 111112223566776664432111 23456777888887766543200 011346677788
Q ss_pred cEEeecccccceeecccc----cccceEEeecccCceeee----ccCCCccEEEEcCce
Q 036679 128 EYLEIFRCMKIRSIKISS----PYLKKLLVRFCNKLYEFK----LDTPNLSVFDYEGDM 178 (294)
Q Consensus 128 ~~L~l~~c~~l~~l~i~~----~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~g~~ 178 (294)
+.+++.. +++.+.-.. .+|+.+.+... ++.+. .++ +|+++.+.+..
T Consensus 303 ~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 303 ARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 8877763 355554322 56777776432 44443 234 67777776653
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.56 E-value=0.00017 Score=56.02 Aligned_cols=11 Identities=0% Similarity=-0.333 Sum_probs=5.5
Q ss_pred ccEEEeeeccc
Q 036679 12 LRELGLFKCAA 22 (294)
Q Consensus 12 Lk~L~L~~~~~ 22 (294)
.+.++++++.+
T Consensus 11 ~~~l~~s~n~l 21 (170)
T 3g39_A 11 GTTVDCSGKSL 21 (170)
T ss_dssp TTEEECTTSCC
T ss_pred CCEEEeCCCCc
Confidence 34555555544
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.50 E-value=0.0002 Score=55.59 Aligned_cols=56 Identities=14% Similarity=0.047 Sum_probs=23.5
Q ss_pred CcccEEEeeCCCCCc--ccccccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 78 PNVRLVDISSLHAPC--GINVALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 78 ~~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
++|+.|+++++.+.. +..+..+++|++|+++++.++.- ....+.++++|+.|++++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCC
Confidence 344444444444211 12234445555555555544321 112233445555555544
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.48 E-value=0.00012 Score=57.06 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=63.6
Q ss_pred ccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEEE
Q 036679 12 LRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVD 84 (294)
Q Consensus 12 Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~ 84 (294)
-+.++++++.++. ++. .-.++|++|+++++. +..+ .+.++++|++|+++++. +..+ ....++|+.|+
T Consensus 14 ~~~l~~~~n~l~~--iP~--~~~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRLAS--VPA--GIPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSCCSS--CCS--CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCCCc--cCC--CcCCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEE
Confidence 4677888776632 221 113678888888774 3332 24567888888888874 2222 12467899999
Q ss_pred eeCCCCCc-c-cccccccccceEEecccccC
Q 036679 85 ISSLHAPC-G-INVALCKNLKELKLFKLSIT 113 (294)
Q Consensus 85 l~~c~~~~-~-~~~~~~~~L~~L~L~~~~i~ 113 (294)
++++.+.. + ..+..+++|++|+++++.+.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99887432 2 23677899999999998765
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.47 E-value=0.00012 Score=57.82 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=43.3
Q ss_pred CCCCccEEEccccCCccc-----c---cccCCcccEEEeeCCCCCcc------cccccccccceEEecccccChHHHH--
Q 036679 55 NLGKLSKFMVRNEDRLAR-----V---SICGPNVRLVDISSLHAPCG------INVALCKNLKELKLFKLSITNEWLC-- 118 (294)
Q Consensus 55 ~l~~L~~L~l~~c~~l~~-----~---~~~~~~L~~L~l~~c~~~~~------~~~~~~~~L~~L~L~~~~i~~~~l~-- 118 (294)
..++|++|++++|..+.. + ....++|++|++++|.+... ..+...++|++|+|+++.+++++..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 346777777777622211 1 11245677777777664321 1123445677777777777665433
Q ss_pred -HHhcCCCCCcEEee
Q 036679 119 -NQFSELPFLEYLEI 132 (294)
Q Consensus 119 -~l~~~~~~L~~L~l 132 (294)
..+..++.|+.|++
T Consensus 114 ~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 114 VEALQSNTSLIELRI 128 (185)
T ss_dssp HHGGGGCSSCCEEEC
T ss_pred HHHHHhCCCceEEEe
Confidence 33445566777777
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.46 E-value=0.00032 Score=54.67 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=15.8
Q ss_pred cccccccceEEecccccChHHHHHHhcCCCCCcEEeecc
Q 036679 96 VALCKNLKELKLFKLSITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 96 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
+..+++|++|+|+++.++.- ....+.++++|+.|++++
T Consensus 53 ~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred hcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCC
Confidence 33444445555544444321 111223444455555444
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.27 E-value=0.0003 Score=60.95 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=52.8
Q ss_pred EEEeeec-ccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccCCcccc----cccCCcccEEEe
Q 036679 14 ELGLFKC-AANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDI 85 (294)
Q Consensus 14 ~L~L~~~-~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l 85 (294)
.++++++ .++ .++. +..+++|++|+|++++.+..+. +.++++|+.|+++++. +..+ ....++|+.|+|
T Consensus 12 ~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence 3455555 453 2444 5666677777776544555443 4556677777777664 2222 124567777777
Q ss_pred eCCCCCc-c-cccccccccceEEecccccC
Q 036679 86 SSLHAPC-G-INVALCKNLKELKLFKLSIT 113 (294)
Q Consensus 86 ~~c~~~~-~-~~~~~~~~L~~L~L~~~~i~ 113 (294)
+++.+.. + ..+...+ |+.|++.++.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7776321 1 1222333 777777777654
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.20 E-value=0.0006 Score=59.03 Aligned_cols=87 Identities=16% Similarity=0.119 Sum_probs=63.1
Q ss_pred CCCCCCCCCCccEEEeee-cccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--Ccccccc
Q 036679 2 SPTRNVTLSSLRELGLFK-CAANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARVSI 75 (294)
Q Consensus 2 ~p~~~~~l~~Lk~L~L~~-~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~~~ 75 (294)
+|. +..+++|++|+|++ |.+.. .....+.++++|+.|+|+++ .+..+. +.++++|++|+++++. .+..-.+
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred cCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 677 88889999999996 87753 12234778999999999998 465553 4578999999999875 2222122
Q ss_pred cCCcccEEEeeCCCCC
Q 036679 76 CGPNVRLVDISSLHAP 91 (294)
Q Consensus 76 ~~~~L~~L~l~~c~~~ 91 (294)
...+|+.|++.++.+.
T Consensus 101 ~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 101 QGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCCEEECCSSCCC
T ss_pred ccCCceEEEeeCCCcc
Confidence 3334999999988754
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.06 E-value=0.0063 Score=53.97 Aligned_cols=217 Identities=11% Similarity=0.098 Sum_probs=118.3
Q ss_pred CccEEEeeec--ccChHHHHHHHhcCCCCCEEEEEcCCCCCeec---cCCCCCccEEEccccC--CcccccccCCcccEE
Q 036679 11 SLRELGLFKC--AANDEAIRDIVAGCPLIERLKIIDCRGLKSLE---FLNLGKLSKFMVRNED--RLARVSICGPNVRLV 83 (294)
Q Consensus 11 ~Lk~L~L~~~--~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l~---~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L 83 (294)
+|+.+.+.++ .+.+.+ +.+| +|+++.+.. +++.+. +.+|++|+.+++.++. .+..-.+.+.+|+.+
T Consensus 136 ~L~~i~l~~~i~~I~~~a----F~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMA----FFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCSEEECCTTCCEECTTT----TTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred CccEEEeCCCccEECHHh----cCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 6777777654 122222 2333 578877764 454443 4567888888887542 222223345778888
Q ss_pred EeeCCCCCc-ccccccccccceEEeccc--ccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeecc
Q 036679 84 DISSLHAPC-GINVALCKNLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRFC 156 (294)
Q Consensus 84 ~l~~c~~~~-~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c 156 (294)
.+...-... ...+.+|++|+.+.+..+ .+.+. .+.+ .+|+.+.+.. +++.+... +++|+.+.+.+.
T Consensus 209 ~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~----aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 209 LLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQE----AFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp ECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTT----TTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESS
T ss_pred EeCCchheehhhHhhCCCCCCEEecCCCccCcccc----cccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc
Confidence 876542111 234667888888888653 13222 2333 5788888743 35555332 267888887654
Q ss_pred cC----ceeee----ccCCCccEEEEcCcee----eeecCccccceEEEEEEEeccChhHHHHHHHHHhcCcccceeEEE
Q 036679 157 NK----LYEFK----LDTPNLSVFDYEGDMV----SFSSNALALSETSLCLDSINVDNQWLVKFIELLAKLNHCSNVLNL 224 (294)
Q Consensus 157 ~~----l~~~~----~~~p~L~~l~~~g~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~l~~l~~LL~~ 224 (294)
.. .+.+. .++++|+++.+..... ..+.++.+|+.+.+.-....... ..+.++ +|+. +.+
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~-------~aF~~~-~L~~-l~l 352 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINF-------SAFNNT-GIKE-VKV 352 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECT-------TSSSSS-CCCE-EEE
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcH-------HhCCCC-CCCE-EEE
Confidence 32 11233 3567888887764311 34556778888877211100111 123445 6777 577
Q ss_pred eeeeeeecchhhhhccCCCC-CCCceEEEEE
Q 036679 225 ECYAAAIIPRELREILSSPL-TYENHVCFII 254 (294)
Q Consensus 225 ~~~~~~~~p~~~~~~~~~~f-~~Lk~L~L~~ 254 (294)
..+....++++.+ ..+ .+++.|.+-.
T Consensus 353 ~~n~~~~l~~~~F----~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 353 EGTTPPQVFEKVW----YGFPDDITVIRVPA 379 (401)
T ss_dssp CCSSCCBCCCSSC----CCSCTTCCEEEECG
T ss_pred cCCCCcccccccc----cCCCCCccEEEeCH
Confidence 7665555554422 222 2566666653
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.84 E-value=0.0017 Score=54.22 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=7.7
Q ss_pred cccccceEEecccccC
Q 036679 98 LCKNLKELKLFKLSIT 113 (294)
Q Consensus 98 ~~~~L~~L~L~~~~i~ 113 (294)
.+++|+.|+|++|.++
T Consensus 194 ~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 194 KAPNLKILNLSGNELK 209 (267)
T ss_dssp HSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCccC
Confidence 4444555555544443
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.39 E-value=0.0017 Score=54.23 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=48.5
Q ss_pred HHhcCCCCCEEEEEcCCCCCeec-----cCCCCCccEEEccccC--Ccccccc-cCCcccEEEeeCCCCCc--c------
Q 036679 30 IVAGCPLIERLKIIDCRGLKSLE-----FLNLGKLSKFMVRNED--RLARVSI-CGPNVRLVDISSLHAPC--G------ 93 (294)
Q Consensus 30 ~~~~~~~Le~L~L~~c~~l~~l~-----~~~l~~L~~L~l~~c~--~l~~~~~-~~~~L~~L~l~~c~~~~--~------ 93 (294)
+..++|+|+.|+|+++. +..+. +..+++|+.|+++++. .+..+.. ...+|+.|++.++.+.. +
T Consensus 165 ~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 34678888888888874 33221 1257888888888775 3322211 11288999998887431 1
Q ss_pred -cccccccccceEEe
Q 036679 94 -INVALCKNLKELKL 107 (294)
Q Consensus 94 -~~~~~~~~L~~L~L 107 (294)
..+..+|+|+.|+=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 23567888888753
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.59 E-value=0.091 Score=46.08 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=7.3
Q ss_pred cccccccceEEecc
Q 036679 96 VALCKNLKELKLFK 109 (294)
Q Consensus 96 ~~~~~~L~~L~L~~ 109 (294)
+..|.+++.+.+..
T Consensus 249 f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 249 FYGCTDLESISIQN 262 (394)
T ss_dssp TTTCSSCCEEEECC
T ss_pred ccccccceeEEcCC
Confidence 34555555555543
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.58 E-value=0.036 Score=43.86 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCCCEEEEEcC
Q 036679 25 EAIRDIVAGCPLIERLKIIDC 45 (294)
Q Consensus 25 ~~l~~~~~~~~~Le~L~L~~c 45 (294)
+.+..+...-+.|++|+|+++
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~n 51 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNM 51 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTC
T ss_pred HHHHHHHhcCCCccEEECCCC
Confidence 566677777777888877664
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.26 E-value=0.17 Score=44.26 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=52.0
Q ss_pred HhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc-cccccccccc
Q 036679 31 VAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC-GINVALCKNL 102 (294)
Q Consensus 31 ~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L 102 (294)
+.+|+.|+.+.+... +..+ .+.+|+.|+.+.+.. .+..+ ...+.+|+.+.+...-... ...+.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred eeecccccEEecccc--cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence 456777777766432 2222 233456677666643 22222 1245677777765432111 1245677778
Q ss_pred ceEEeccc--ccChHHHHHHhcCCCCCcEEeecc
Q 036679 103 KELKLFKL--SITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 103 ~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
+.+.+-.. .+.+ ..+.+|.+|+.+++.+
T Consensus 337 ~~i~ip~sv~~I~~----~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 337 ERIAIPSSVTKIPE----SAFSNCTALNNIEYSG 366 (394)
T ss_dssp CEEEECTTCCBCCG----GGGTTCTTCCEEEESS
T ss_pred CEEEECcccCEEhH----hHhhCCCCCCEEEECC
Confidence 88777432 1322 2466788888877765
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.26 E-value=0.089 Score=41.56 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=49.3
Q ss_pred CCCccEEEccccCCccc-----c---cccCCcccEEEeeCCCCCcc------cccccccccceEEecccccChHHHHH--
Q 036679 56 LGKLSKFMVRNEDRLAR-----V---SICGPNVRLVDISSLHAPCG------INVALCKNLKELKLFKLSITNEWLCN-- 119 (294)
Q Consensus 56 l~~L~~L~l~~c~~l~~-----~---~~~~~~L~~L~l~~c~~~~~------~~~~~~~~L~~L~L~~~~i~~~~l~~-- 119 (294)
-++|++|+++++..+.. + .....+|+.|++++|.+... ..+..-..|++|+|+.+.+++++...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 36788888876532221 1 11346788888888874321 12334467888888888888765443
Q ss_pred -HhcCCCCCcEEeeccc
Q 036679 120 -QFSELPFLEYLEIFRC 135 (294)
Q Consensus 120 -l~~~~~~L~~L~l~~c 135 (294)
.+..-..|+.|+++++
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 3444566888888754
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.23 E-value=0.21 Score=43.72 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=81.2
Q ss_pred CCCCCccEEEeeecccChHHHHHHHhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccC-Ccccc-cccCCccc
Q 036679 7 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNED-RLARV-SICGPNVR 81 (294)
Q Consensus 7 ~~l~~Lk~L~L~~~~~~~~~l~~~~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~-~l~~~-~~~~~~L~ 81 (294)
..++.|+.+.+...... +......+..|+.+.+... +..+ ...++..|+.+.+.... .+..- ...+..++
T Consensus 205 ~~~~~L~~i~~~~~~~~---i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 205 AECILLENMEFPNSLYY---LGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLK 279 (394)
T ss_dssp TTCTTCCBCCCCTTCCE---ECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCC
T ss_pred ccccccceeecCCCceE---eehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccc
Confidence 45666777666554211 0111334567777777542 2222 23455667766665422 11110 11344555
Q ss_pred EEEeeCCCCCcccccccccccceEEeccc--ccChHHHHHHhcCCCCCcEEeecccccceeeccc----ccccceEEeec
Q 036679 82 LVDISSLHAPCGINVALCKNLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFRCMKIRSIKIS----SPYLKKLLVRF 155 (294)
Q Consensus 82 ~L~l~~c~~~~~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~i~----~~~L~~L~l~~ 155 (294)
.........+ ...+..|.+|+.+.+... .+.+ ..+.+|.+|+.+++.. +++.+.-. +.+|+.+.+..
T Consensus 280 ~~~~~~~~i~-~~~F~~~~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 280 KVIYGSVIVP-EKTFYGCSSLTEVKLLDSVKFIGE----EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp EEEECSSEEC-TTTTTTCTTCCEEEECTTCCEECT----TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT
T ss_pred eeccCceeec-cccccccccccccccccccceech----hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc
Confidence 5444332211 123456667777766443 1222 2355677777777642 34444322 24666666543
Q ss_pred ccCceeee----ccCCCccEEEEcCcee---eeecCccccceE
Q 036679 156 CNKLYEFK----LDTPNLSVFDYEGDMV---SFSSNALALSET 191 (294)
Q Consensus 156 c~~l~~~~----~~~p~L~~l~~~g~~~---~~~~~~~~L~~~ 191 (294)
. ++.+. .+|++|+++.+..... ..+.++.+|+.+
T Consensus 353 ~--l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 353 S--LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp T--CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred c--ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 2 33443 2456677766643311 334555555554
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.67 E-value=0.24 Score=43.38 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=61.5
Q ss_pred cCCCCCccEEEccccC-Cccc-ccccCCcccEEEeeCCCCCc-ccccccccccceEEeccc--ccChHHHHHHhcCCCCC
Q 036679 53 FLNLGKLSKFMVRNED-RLAR-VSICGPNVRLVDISSLHAPC-GINVALCKNLKELKLFKL--SITNEWLCNQFSELPFL 127 (294)
Q Consensus 53 ~~~l~~L~~L~l~~c~-~l~~-~~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L 127 (294)
+.+|..|+.+.+.+.. .+.. ....+++|+.+.+...-... ...+.+|.+|+.+.+... .+.+ ..+.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTC
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCC
Confidence 3467788888875422 1111 12256788888886543211 234778999999999653 2433 347789999
Q ss_pred cEEeecccccceeeccc----ccccceEEeecc
Q 036679 128 EYLEIFRCMKIRSIKIS----SPYLKKLLVRFC 156 (294)
Q Consensus 128 ~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c 156 (294)
+.+.+.. +++.+.-. +.+|+.+++.+.
T Consensus 337 ~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 9999953 35555432 367888877654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.28 E-value=2.1 Score=36.91 Aligned_cols=105 Identities=11% Similarity=0.194 Sum_probs=57.2
Q ss_pred HhcCCCCCEEEEEcCCCCCee---ccCCCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc-cccccccccc
Q 036679 31 VAGCPLIERLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC-GINVALCKNL 102 (294)
Q Consensus 31 ~~~~~~Le~L~L~~c~~l~~l---~~~~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L 102 (294)
...+.+|+.+.+.. ++..+ ...++..|+.+.+... +..+ ...+.+|+.+.+...-... ...+.+|.+|
T Consensus 213 f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTC
T ss_pred cccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccccceecccccccccccc
Confidence 44566777776643 23332 2345567777776542 2222 1235667777765442111 1345678888
Q ss_pred ceEEecccccChHHHHHHhcCCCCCcEEeecccccceeec
Q 036679 103 KELKLFKLSITNEWLCNQFSELPFLEYLEIFRCMKIRSIK 142 (294)
Q Consensus 103 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~l~ 142 (294)
+.+.+..+.++.- -...+.+|.+|+.+++.. +++.+.
T Consensus 289 ~~i~l~~~~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~ 325 (379)
T 4h09_A 289 TKVVMDNSAIETL-EPRVFMDCVKLSSVTLPT--ALKTIQ 325 (379)
T ss_dssp CEEEECCTTCCEE-CTTTTTTCTTCCEEECCT--TCCEEC
T ss_pred cccccccccccee-hhhhhcCCCCCCEEEcCc--cccEEH
Confidence 8888876543220 012466788888888753 344443
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.06 E-value=2 Score=37.06 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCCCccEEEccccCCcccc----cccCCcccEEEeeCCCCCc-ccccccccccceEEeccc--ccChHHHHHHhcCCCCC
Q 036679 55 NLGKLSKFMVRNEDRLARV----SICGPNVRLVDISSLHAPC-GINVALCKNLKELKLFKL--SITNEWLCNQFSELPFL 127 (294)
Q Consensus 55 ~l~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~~~-~~~~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L 127 (294)
.+..|+.+.+... +..+ ...+..|+.+.+...-... ...+..|.+|+.+.+... .+.+ ..+.+|++|
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~----~aF~~c~~L 288 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPY----LLCSGCSNL 288 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECT----TTTTTCTTC
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccccceeccc----ccccccccc
Confidence 4567777776542 2222 2246778888876553211 134567888999988653 1222 346789999
Q ss_pred cEEeecccccceeeccc----ccccceEEeecccCceeee----ccCCCccEEEE
Q 036679 128 EYLEIFRCMKIRSIKIS----SPYLKKLLVRFCNKLYEFK----LDTPNLSVFDY 174 (294)
Q Consensus 128 ~~L~l~~c~~l~~l~i~----~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~ 174 (294)
+.+.+.+ ..++.+.-. +.+|+.+.+.. .++.+. .+|.+|+++.+
T Consensus 289 ~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 289 TKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred ccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 9999875 235555432 25677777642 233443 23455555544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=66.39 E-value=1.4 Score=31.98 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=6.0
Q ss_pred CCCccEEEcccc
Q 036679 56 LGKLSKFMVRNE 67 (294)
Q Consensus 56 l~~L~~L~l~~c 67 (294)
+++|+.|++.++
T Consensus 54 l~~L~~L~L~~N 65 (130)
T 3rfe_A 54 LPALRTAHLGAN 65 (130)
T ss_dssp CTTCCEEECCSS
T ss_pred ccccCEEEecCC
Confidence 345555555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=53.30 E-value=12 Score=26.85 Aligned_cols=34 Identities=6% Similarity=-0.103 Sum_probs=20.2
Q ss_pred cccEEEeeCCCCCc--ccccccccccceEEeccccc
Q 036679 79 NVRLVDISSLHAPC--GINVALCKNLKELKLFKLSI 112 (294)
Q Consensus 79 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~L~~~~i 112 (294)
+|+.|+|+++.+.. ...+..+++|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 56666666665321 22345666777777777653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.95 E-value=50 Score=22.31 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=15.9
Q ss_pred cccccccceEEeccc--ccChHHHHHHhcCCCCCcEEeecc
Q 036679 96 VALCKNLKELKLFKL--SITNEWLCNQFSELPFLEYLEIFR 134 (294)
Q Consensus 96 ~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~ 134 (294)
|.+|.+|+.+.+-.. .+.+. .+.+|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~v~~Ig~~----aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIGLLYDG----MFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTTSSCCCTT----SSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCchheEcHH----HHhccCCccEEEEcC
Confidence 445555555555332 12221 244555555555543
No 166
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=21.42 E-value=62 Score=16.19 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=14.5
Q ss_pred HHHHHHHhhcCCCCCeeE
Q 036679 264 AKLLDSLLWISPHAETLS 281 (294)
Q Consensus 264 ~~~~~~lL~~~P~le~l~ 281 (294)
.+++++.|+..|.++.|.
T Consensus 9 sdimdfvlkntpsmqal~ 26 (31)
T 2agh_C 9 SDIMDFVLKNTPSMQALG 26 (31)
T ss_dssp HHHHHHHHHHSCCCCCCC
T ss_pred HHHHHHHHhCChhHHHHh
Confidence 467788999999988773
Done!