Query 036681
Match_columns 159
No_of_seqs 170 out of 1325
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 06:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 4.5E-52 1.5E-56 317.0 11.1 149 9-159 33-183 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 4.2E-52 1.4E-56 311.8 9.0 149 6-156 3-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 1.4E-36 4.9E-41 223.3 5.1 132 10-147 19-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 1.7E-31 5.7E-36 195.0 1.2 138 5-144 4-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 9.6E-27 3.3E-31 170.1 2.9 103 9-113 3-111 (149)
6 2js7_A Myeloid differentiation 99.9 3.7E-26 1.3E-30 168.9 5.3 102 9-112 14-120 (160)
7 2j67_A TOLL like receptor 10; 99.9 5.3E-26 1.8E-30 170.7 4.1 105 8-114 32-142 (178)
8 1t3g_A X-linked interleukin-1 99.9 3.2E-25 1.1E-29 163.7 7.2 100 10-109 1-114 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 2.3E-19 7.8E-24 160.4 7.1 99 9-109 668-774 (844)
10 1eiw_A Hypothetical protein MT 98.4 1.8E-07 6E-12 64.6 4.3 72 10-104 3-74 (111)
11 3hyn_A Putative signal transdu 97.5 0.00061 2.1E-08 50.6 8.7 82 19-106 27-118 (189)
12 2f62_A Nucleoside 2-deoxyribos 95.9 0.055 1.9E-06 39.2 8.6 70 25-94 26-99 (161)
13 2khz_A C-MYC-responsive protei 93.7 0.61 2.1E-05 33.5 9.2 84 7-94 7-104 (165)
14 4fyk_A Deoxyribonucleoside 5'- 91.5 1.6 5.3E-05 31.2 8.7 77 13-94 4-95 (152)
15 3ehd_A Uncharacterized conserv 89.8 2.8 9.6E-05 30.1 8.9 75 25-104 19-104 (162)
16 1s2d_A Purine trans deoxyribos 88.3 3.5 0.00012 29.7 8.5 80 13-94 9-110 (167)
17 2yvq_A Carbamoyl-phosphate syn 76.1 8.4 0.00029 26.7 6.3 62 14-77 27-107 (143)
18 1f8y_A Nucleoside 2-deoxyribos 75.0 10 0.00034 26.9 6.6 69 25-94 18-107 (157)
19 1v95_A Nuclear receptor coacti 65.9 30 0.001 23.8 7.6 57 12-71 9-67 (130)
20 1byr_A Protein (endonuclease); 64.8 25 0.00087 23.6 6.8 37 26-63 14-51 (155)
21 1sc3_B Interleukin-1 beta conv 57.2 2.4 8.3E-05 27.2 0.2 23 17-39 23-45 (88)
22 2ql9_B Caspase-7; cysteine pro 56.3 5 0.00017 26.0 1.6 33 7-39 6-47 (97)
23 2jug_A TUBC protein; docking d 55.6 11 0.00038 23.2 3.1 49 29-94 8-60 (78)
24 1ccw_A Protein (glutamate muta 53.6 39 0.0013 22.9 6.0 72 30-109 22-94 (137)
25 1qtn_B Caspase-8; apoptosis, d 51.0 2.8 9.6E-05 27.2 -0.3 33 7-39 8-49 (95)
26 2dko_B Caspase-3; low barrier 48.9 3.6 0.00012 27.1 0.0 32 8-39 13-53 (103)
27 1pyo_B Caspase-2; apoptosis, c 48.4 3.8 0.00013 27.1 0.0 31 9-39 12-51 (105)
28 2i2x_B MTAC, methyltransferase 46.8 78 0.0027 23.8 7.3 73 29-109 141-213 (258)
29 3dt5_A Uncharacterized protein 46.8 8.1 0.00028 25.5 1.4 61 75-146 36-100 (135)
30 2pw6_A Uncharacterized protein 46.5 43 0.0015 25.7 5.8 69 25-95 95-164 (271)
31 1wu7_A Histidyl-tRNA synthetas 45.4 36 0.0012 27.6 5.5 58 11-73 332-390 (434)
32 4g84_A Histidine--tRNA ligase, 44.6 60 0.002 26.3 6.8 60 9-72 364-424 (464)
33 1evl_A Threonyl-tRNA synthetas 44.3 30 0.001 27.7 4.8 57 11-71 298-355 (401)
34 2i4l_A Proline-tRNA ligase; al 43.5 27 0.00092 28.7 4.5 45 11-55 365-412 (458)
35 4g85_A Histidine-tRNA ligase, 42.8 63 0.0021 26.9 6.7 61 9-73 417-478 (517)
36 3net_A Histidyl-tRNA synthetas 42.1 48 0.0016 27.3 5.9 62 10-75 370-431 (465)
37 2xzd_B Caspase-3; hydrolase-pr 42.0 5.8 0.0002 26.9 0.2 31 9-39 13-52 (118)
38 2a5l_A Trp repressor binding p 39.6 93 0.0032 21.6 6.8 65 25-92 20-96 (200)
39 3rjm_B Caspase-2; caspase-2, c 37.4 6.8 0.00023 26.5 -0.1 31 9-39 13-52 (117)
40 4a6h_A Phosphatidylinositol 4, 36.8 22 0.00074 23.7 2.4 20 132-151 101-120 (120)
41 2yxb_A Coenzyme B12-dependent 36.7 1E+02 0.0036 21.3 8.5 89 12-109 19-109 (161)
42 3lc0_A Histidyl-tRNA synthetas 36.7 80 0.0027 26.0 6.4 60 10-73 360-419 (456)
43 1qe0_A Histidyl-tRNA synthetas 36.5 30 0.001 27.8 3.6 58 11-73 329-387 (420)
44 1nj1_A PROR, proline-tRNA synt 35.8 41 0.0014 28.1 4.5 46 10-55 313-363 (501)
45 1htt_A Histidyl-tRNA synthetas 35.4 39 0.0013 27.1 4.2 57 11-71 327-386 (423)
46 2h1v_A Ferrochelatase; rossman 35.3 91 0.0031 24.2 6.2 65 26-92 62-135 (310)
47 4hde_A SCO1/SENC family lipopr 34.9 48 0.0016 22.8 4.2 56 50-110 21-79 (170)
48 3aon_B V-type sodium ATPase su 33.5 64 0.0022 21.4 4.4 50 33-88 15-64 (115)
49 3hjn_A DTMP kinase, thymidylat 33.4 60 0.0021 23.2 4.6 31 15-45 2-34 (197)
50 3pid_A UDP-glucose 6-dehydroge 33.1 33 0.0011 28.2 3.5 49 21-69 347-400 (432)
51 3b6i_A Flavoprotein WRBA; flav 32.8 92 0.0031 21.5 5.5 52 25-79 16-82 (198)
52 4e51_A Histidine--tRNA ligase; 32.6 61 0.0021 26.7 5.0 62 11-73 354-416 (467)
53 3sm9_A Mglur3, metabotropic gl 32.5 53 0.0018 26.8 4.6 59 14-72 188-249 (479)
54 1z0j_A RAB-22, RAS-related pro 31.9 1.1E+02 0.0037 20.0 7.0 62 50-114 63-125 (170)
55 1v5p_A Pleckstrin homology dom 31.3 30 0.001 23.1 2.5 20 132-151 103-122 (126)
56 3czq_A Putative polyphosphate 30.9 82 0.0028 24.7 5.2 99 13-112 86-204 (304)
57 2yry_A Pleckstrin homology dom 30.8 31 0.001 22.1 2.4 18 133-150 104-121 (122)
58 3ikl_A DNA polymerase subunit 30.7 70 0.0024 26.6 5.0 25 22-46 361-387 (459)
59 1ydg_A Trp repressor binding p 30.5 75 0.0026 22.5 4.7 54 25-79 21-92 (211)
60 2fcj_A Small toprim domain pro 30.2 79 0.0027 21.2 4.4 74 16-93 30-104 (119)
61 1xrs_B D-lysine 5,6-aminomutas 30.2 1.8E+02 0.0062 22.1 7.0 71 35-110 152-225 (262)
62 2cof_A Protein KIAA1914; PH do 29.1 39 0.0013 21.2 2.6 19 132-150 84-102 (107)
63 3fni_A Putative diflavin flavo 28.7 1.4E+02 0.0048 20.3 8.7 62 14-79 7-70 (159)
64 3l4e_A Uncharacterized peptida 28.2 1.6E+02 0.0056 21.2 6.3 66 13-85 30-96 (206)
65 1egw_A MADS box transcription 27.7 13 0.00045 23.2 0.1 32 61-92 36-67 (77)
66 3n75_A LDC, lysine decarboxyla 27.6 1.6E+02 0.0056 25.8 7.1 69 26-109 17-85 (715)
67 3ojo_A CAP5O; rossmann fold, c 27.6 66 0.0023 26.4 4.3 61 20-81 329-392 (431)
68 2j3l_A Prolyl-tRNA synthetase; 26.7 58 0.002 27.4 3.9 61 11-75 470-533 (572)
69 4a7p_A UDP-glucose dehydrogena 26.6 51 0.0017 27.2 3.5 62 20-81 336-406 (446)
70 1bax_A M-PMV MA, M-PMV matrix 26.5 36 0.0012 22.1 2.0 18 25-42 9-26 (94)
71 1upq_A PEPP1; PH domain, phosp 26.2 39 0.0013 21.6 2.3 24 132-155 92-115 (123)
72 2d00_A V-type ATP synthase sub 26.2 1.4E+02 0.0047 19.4 6.9 43 33-78 16-58 (109)
73 2fzv_A Putative arsenical resi 25.9 2E+02 0.007 21.9 6.7 54 25-79 75-137 (279)
74 1qf6_A THRRS, threonyl-tRNA sy 25.8 65 0.0022 27.8 4.1 60 11-75 539-599 (642)
75 2amj_A Modulator of drug activ 25.2 1.8E+02 0.0062 20.6 6.0 56 26-84 34-90 (204)
76 2d9v_A Pleckstrin homology dom 25.0 48 0.0016 21.8 2.6 21 132-152 97-117 (130)
77 3h5l_A Putative branched-chain 24.8 1.3E+02 0.0045 23.3 5.6 58 14-72 167-225 (419)
78 1nyr_A Threonyl-tRNA synthetas 24.6 70 0.0024 27.5 4.1 59 11-73 545-604 (645)
79 2efe_B Small GTP-binding prote 24.6 1.6E+02 0.0053 19.5 6.8 61 50-113 69-130 (181)
80 3p57_A Myocyte-specific enhanc 24.6 18 0.00062 23.3 0.3 34 60-93 35-68 (90)
81 3kp1_A D-ornithine aminomutase 24.4 1.8E+02 0.0062 25.7 6.5 72 33-109 628-701 (763)
82 3vqt_A RF-3, peptide chain rel 24.4 3E+02 0.01 23.1 7.9 52 49-104 107-159 (548)
83 2zt5_A Glycyl-tRNA synthetase; 24.4 1E+02 0.0035 27.0 5.1 60 11-74 559-620 (693)
84 2i5f_A Pleckstrin; PH domain, 24.2 46 0.0016 20.6 2.3 17 132-148 92-108 (109)
85 3kbq_A Protein TA0487; structu 24.0 1.5E+02 0.005 21.1 5.1 65 25-90 22-88 (172)
86 1u3d_A Cryptochrome 1 apoprote 23.7 1.9E+02 0.0064 24.0 6.5 53 28-84 67-119 (509)
87 3hly_A Flavodoxin-like domain; 23.6 1.8E+02 0.006 19.7 10.6 51 25-79 15-65 (161)
88 1dlj_A UDP-glucose dehydrogena 23.4 98 0.0033 24.8 4.6 50 21-70 324-379 (402)
89 3ro3_B Minsc, peptide of prote 23.4 52 0.0018 15.3 1.7 13 135-147 8-20 (22)
90 4f21_A Carboxylesterase/phosph 23.3 1.6E+02 0.0056 21.4 5.6 33 12-44 184-218 (246)
91 3ks9_A Mglur1, metabotropic gl 23.3 96 0.0033 25.3 4.6 51 14-64 200-252 (496)
92 4h3d_A 3-dehydroquinate dehydr 23.1 1.1E+02 0.0039 23.0 4.7 66 31-97 104-169 (258)
93 1y80_A Predicted cobalamin bin 22.9 2.1E+02 0.0071 20.3 8.1 74 29-109 106-180 (210)
94 3a32_A Probable threonyl-tRNA 22.8 56 0.0019 26.9 3.0 43 11-53 338-387 (471)
95 1ati_A Glycyl-tRNA synthetase; 22.6 1.4E+02 0.0048 24.8 5.5 58 11-73 398-459 (505)
96 2coc_A FYVE, rhogef and PH dom 22.6 51 0.0018 21.5 2.3 17 133-149 90-106 (112)
97 3ozi_A L6TR; plant TIR domain, 22.4 1.2E+02 0.0041 22.3 4.5 64 37-104 33-97 (204)
98 3g79_A NDP-N-acetyl-D-galactos 22.3 60 0.002 27.1 3.1 53 20-72 367-422 (478)
99 3n0x_A Possible substrate bind 22.2 1.7E+02 0.0057 22.4 5.6 53 13-66 143-196 (374)
100 2fg5_A RAB-22B, RAS-related pr 22.1 1.9E+02 0.0065 19.6 6.9 62 50-114 80-142 (192)
101 2q62_A ARSH; alpha/beta, flavo 22.1 2.5E+02 0.0084 20.9 8.2 54 25-79 51-112 (247)
102 1x1g_A Pleckstrin 2; PH domain 21.9 62 0.0021 20.8 2.6 19 132-150 107-125 (129)
103 2d9y_A Pleckstrin homology dom 21.2 62 0.0021 20.3 2.5 20 132-151 92-111 (117)
104 1jdp_A NPR-C, atrial natriuret 21.1 1.1E+02 0.0039 24.0 4.5 58 14-71 157-218 (441)
105 2i4r_A V-type ATP synthase sub 20.9 86 0.003 20.3 3.1 44 33-78 22-65 (102)
106 4h0c_A Phospholipase/carboxyle 20.9 1.7E+02 0.0059 20.6 5.1 33 12-44 152-186 (210)
107 2zki_A 199AA long hypothetical 20.7 2.1E+02 0.0073 19.6 5.9 52 25-79 18-84 (199)
108 1r2q_A RAS-related protein RAB 20.7 1.8E+02 0.0061 18.7 7.5 61 50-113 63-124 (170)
109 2e4u_A Metabotropic glutamate 20.6 1.6E+02 0.0054 24.3 5.4 36 14-49 189-224 (555)
110 1np7_A DNA photolyase; protein 20.6 3E+02 0.01 22.5 7.1 58 28-90 67-125 (489)
111 3pzy_A MOG; ssgcid, seattle st 20.6 82 0.0028 22.0 3.2 43 26-69 27-71 (164)
112 2dkp_A Pleckstrin homology dom 20.4 62 0.0021 20.7 2.4 18 133-150 103-120 (128)
113 3aj4_A Pleckstrin homology dom 20.3 61 0.0021 20.3 2.3 17 132-148 94-110 (112)
114 1v88_A Oxysterol binding prote 20.2 63 0.0021 21.6 2.4 21 132-152 107-127 (130)
115 3ezx_A MMCP 1, monomethylamine 20.1 2.3E+02 0.008 20.5 5.8 71 31-109 112-186 (215)
116 1wgq_A FYVE, rhogef and PH dom 20.0 60 0.002 20.2 2.2 18 132-149 86-103 (109)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=4.5e-52 Score=316.96 Aligned_cols=149 Identities=38% Similarity=0.709 Sum_probs=141.6
Q ss_pred CCeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHH
Q 036681 9 SCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELL 87 (159)
Q Consensus 9 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~ 87 (159)
.++|||||||+++|+|..|+.+|+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|+|++|+.|.||++||.
T Consensus 33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~ 112 (204)
T 3ozi_A 33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELA 112 (204)
T ss_dssp -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHH
T ss_pred CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHH
Confidence 389999999999999889999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHHhhcc-cCceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHHhccccceeccCCC
Q 036681 88 KILECKGK-KGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR 159 (159)
Q Consensus 88 ~~~~~~~~-~~~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~~~~ 159 (159)
.+++|.++ ++++||||||+|+|++||+|+|.||++|+++++++. ++++++||.||++|++++||++.+++
T Consensus 113 ~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~ 183 (204)
T 3ozi_A 113 EIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKND 183 (204)
T ss_dssp HHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred HHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCC
Confidence 99999764 578999999999999999999999999999999874 78999999999999999999998764
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.2e-52 Score=311.77 Aligned_cols=149 Identities=40% Similarity=0.744 Sum_probs=127.6
Q ss_pred CCCCCeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHH
Q 036681 6 SSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLN 84 (159)
Q Consensus 6 s~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~ 84 (159)
||..++|||||||+++|+|+.|+++|+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|+|++|++|.||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 445788999999999999889999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHHhccccceecc
Q 036681 85 ELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSM 156 (159)
Q Consensus 85 El~~~~~~~~~~~~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~ 156 (159)
||..+++|.+.++++||||||+|+|++|++|+|.||++|.+++++ .+.+++++||.||++|++++|+++.
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 999999998888999999999999999999999999999999987 5689999999999999999999983
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=1.4e-36 Score=223.29 Aligned_cols=132 Identities=18% Similarity=0.391 Sum_probs=120.7
Q ss_pred CeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHH
Q 036681 10 CKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLK 88 (159)
Q Consensus 10 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~ 88 (159)
++|||||||+++| +..|+.+|+.+|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+|++|++|.||+.||..
T Consensus 19 ~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~ 97 (154)
T 3h16_A 19 PPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDG 97 (154)
T ss_dssp CSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHH
T ss_pred CCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHH
Confidence 8899999999999 568999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHhhcccCceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHHh
Q 036681 89 ILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEA 147 (159)
Q Consensus 89 ~~~~~~~~~~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~v 147 (159)
++++...++.+||||||+++|++|++|.|.|+++|...... +.+.++-+.|.++
T Consensus 98 ~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~-----~~~~~ia~~l~~l 151 (154)
T 3h16_A 98 LFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST-----KSVDEIVADLMAI 151 (154)
T ss_dssp HTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence 99987777789999999999999999999999999877554 4466666666654
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=1.7e-31 Score=194.95 Aligned_cols=138 Identities=19% Similarity=0.272 Sum_probs=96.0
Q ss_pred CCCCCCeecEEEeccCCccchhHHHHHHHHhhc--CCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChh
Q 036681 5 LSSSSCKYDVFINFGGGDTRDNFTSHLVAALHD--RNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKW 81 (159)
Q Consensus 5 ~s~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~--~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~w 81 (159)
|+...+.|||||||+++|+ .||.+|+.+|++ .|+++|++++ +.||+.+.++|.++|++|+.+|+|+|++|++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 4445689999999999995 689999999998 5999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCceeeeEEEeeCCcccccccCcc-hhHHHhhhcccCCChhHHHHHHHHH
Q 036681 82 CLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSF-RDPFVMHEGQFQVHPENVQKWRDGL 144 (159)
Q Consensus 82 c~~El~~~~~~~~~~~~~IiPV~~~v~p~~v~~~~~~~-~~~f~~~~~~~~~~~~~~~~W~~al 144 (159)
|+.|+..|+.+...+..+||||++++++++++.....+ ...+......++.-.+.+.+|++||
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 99999999998633334788999999877776533221 1111122233333457788888775
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.92 E-value=9.6e-27 Score=170.11 Aligned_cols=103 Identities=22% Similarity=0.371 Sum_probs=91.7
Q ss_pred CCeecEEEeccCCccchhHHHH-HHHHhhcC--CceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHH
Q 036681 9 SCKYDVFINFGGGDTRDNFTSH-LVAALHDR--NVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLN 84 (159)
Q Consensus 9 ~~~yDVFISy~~~D~~~~fv~~-L~~~L~~~--gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~ 84 (159)
.+.|||||||+++|. .||.+ |...|++. |+++|+|++ +.||+.+.++|.++|++|+++|+|+||+|++|.||+.
T Consensus 3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~ 80 (149)
T 1fyx_A 3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKY 80 (149)
T ss_dssp SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHH
Confidence 468999999999995 79986 99999986 999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hcccCceeeeEEEe-eCCcccc
Q 036681 85 ELLKILEC-KGKKGQIVIPVFYE-VDPSDVC 113 (159)
Q Consensus 85 El~~~~~~-~~~~~~~IiPV~~~-v~p~~v~ 113 (159)
|+..|+.+ .++++.+||||+|+ +++.+++
T Consensus 81 El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 81 ELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 99999865 34567799999984 5555554
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.92 E-value=3.7e-26 Score=168.87 Aligned_cols=102 Identities=23% Similarity=0.388 Sum_probs=91.1
Q ss_pred CCeecEEEeccCCccchhHHHHHHHHhhcC--CceEEeeCc-ccCcccchHHHHHHHH-hcceEEEEeecCCcCChhHHH
Q 036681 9 SCKYDVFINFGGGDTRDNFTSHLVAALHDR--NVKTFIDEE-IRRGDEISTAISDAIE-ASKISVIIFSEDYASSKWCLN 84 (159)
Q Consensus 9 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~-~~~G~~~~~~i~~ai~-~S~~~I~v~S~~~~~S~wc~~ 84 (159)
.+.|||||||+++| ..||.+|...|++. |+++|++++ +.||+.+.++|.++|+ +|+.+|+|+||+|++|.||+.
T Consensus 14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~ 91 (160)
T 2js7_A 14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF 91 (160)
T ss_dssp TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence 47899999999999 58999999999984 699999998 9999999999999999 799999999999999999999
Q ss_pred HHHHHHHhh-cccCceeeeEEEeeCCccc
Q 036681 85 ELLKILECK-GKKGQIVIPVFYEVDPSDV 112 (159)
Q Consensus 85 El~~~~~~~-~~~~~~IiPV~~~v~p~~v 112 (159)
|+..|+.+. .+++.+||||+|+.-+.++
T Consensus 92 El~~a~~~~~~~~~~~vIpV~~~~~~~~l 120 (160)
T 2js7_A 92 QTKFALSLSPGAHQKRLIPIKYKAMKKEF 120 (160)
T ss_dssp HHHHHHHHCTTHHHHTEEEEESSCCCCCC
T ss_pred HHHHHHHHHHccCCCEEEEEEEcccchhh
Confidence 999999875 4456799999997544333
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=5.3e-26 Score=170.73 Aligned_cols=105 Identities=19% Similarity=0.360 Sum_probs=87.9
Q ss_pred CCCeecEEEeccCCccchhHHHH-HHHHhhc--CCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHH
Q 036681 8 SSCKYDVFINFGGGDTRDNFTSH-LVAALHD--RNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCL 83 (159)
Q Consensus 8 ~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~--~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~ 83 (159)
..+.|||||||+++|. .||.. |...|++ +|+++|++++ +.||+.+.++|.++|++|+.+|+|+||+|++|.||+
T Consensus 32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 3478999999999994 79975 9999998 8999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-cccCceeeeEEEe-eCCccccc
Q 036681 84 NELLKILECK-GKKGQIVIPVFYE-VDPSDVCY 114 (159)
Q Consensus 84 ~El~~~~~~~-~~~~~~IiPV~~~-v~p~~v~~ 114 (159)
.|+..|+.+. ++++.+||||+|+ +++.+++.
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~ 142 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEPIPFYCIPT 142 (178)
T ss_dssp THHHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence 9999999754 4566799999985 44444443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.91 E-value=3.2e-25 Score=163.74 Aligned_cols=100 Identities=18% Similarity=0.296 Sum_probs=88.6
Q ss_pred CeecEEEeccCCcc---------chhHHHHHHH-Hhh-cCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCc
Q 036681 10 CKYDVFINFGGGDT---------RDNFTSHLVA-ALH-DRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYA 77 (159)
Q Consensus 10 ~~yDVFISy~~~D~---------~~~fv~~L~~-~L~-~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~ 77 (159)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|++++ +.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999995 3678888665 699 79999999999 999999999999999999999999999997
Q ss_pred -CChhHHHHHHHHHHhh-cccCceeeeEEEeeCC
Q 036681 78 -SSKWCLNELLKILECK-GKKGQIVIPVFYEVDP 109 (159)
Q Consensus 78 -~S~wc~~El~~~~~~~-~~~~~~IiPV~~~v~p 109 (159)
.|.||..|+..|+.+. .+++.+||||+++-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999885 5567899999976433
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=160.35 Aligned_cols=99 Identities=21% Similarity=0.325 Sum_probs=89.3
Q ss_pred CCeecEEEeccCCccchhHH-HHHHHHhhc-----CCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChh
Q 036681 9 SCKYDVFINFGGGDTRDNFT-SHLVAALHD-----RNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKW 81 (159)
Q Consensus 9 ~~~yDVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~w 81 (159)
.+.|||||||+++|. .|| .+|...|+. .|+++|++++ +.||+.+.++|.++|++|+.+|+|+|++|++|.|
T Consensus 668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~w 745 (844)
T 3j0a_A 668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGW 745 (844)
T ss_dssp CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTS
T ss_pred ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChH
Confidence 478999999999994 566 789999985 5899999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-cccCceeeeEEEeeCC
Q 036681 82 CLNELLKILECK-GKKGQIVIPVFYEVDP 109 (159)
Q Consensus 82 c~~El~~~~~~~-~~~~~~IiPV~~~v~p 109 (159)
|..|+..|+.+. ++++.+||||+|+.-|
T Consensus 746 c~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 746 CLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 999999999875 5667899999986433
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.44 E-value=1.8e-07 Score=64.63 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=53.6
Q ss_pred CeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHH
Q 036681 10 CKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKI 89 (159)
Q Consensus 10 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~ 89 (159)
.+|.+||||+.+|. ...|...|.+.|+..- | ..|+.|+++|++.++...+|+||..|+..|
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 46999999999983 3344444444455332 1 678999999999999999999999999998
Q ss_pred HHhhcccCceeeeEE
Q 036681 90 LECKGKKGQIVIPVF 104 (159)
Q Consensus 90 ~~~~~~~~~~IiPV~ 104 (159)
.+..+ .||-|.
T Consensus 64 ~~~gk----pIigV~ 74 (111)
T 1eiw_A 64 RKSSK----PIITVR 74 (111)
T ss_dssp TTTTC----CEEEEC
T ss_pred HHcCC----CEEEEE
Confidence 75443 666664
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.49 E-value=0.00061 Score=50.60 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=60.7
Q ss_pred cCCccchhHHHHHHHHhhcCCceEEeeCc-cc----C----cccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHH
Q 036681 19 GGGDTRDNFTSHLVAALHDRNVKTFIDEE-IR----R----GDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKI 89 (159)
Q Consensus 19 ~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~----~----G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~ 89 (159)
..+|. .....|..--.+..+-.|.|.+ .. - -..|...|.+.|+.|+.+|+++|++...|.|...|++.|
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 55663 5666666655555555566754 31 2 245778899999999999999999999999999999999
Q ss_pred H-HhhcccCceeeeEEEe
Q 036681 90 L-ECKGKKGQIVIPVFYE 106 (159)
Q Consensus 90 ~-~~~~~~~~~IiPV~~~ 106 (159)
+ ++ +.+||-|..+
T Consensus 105 i~~~----~~PII~Vy~~ 118 (189)
T 3hyn_A 105 IGTK----GLPVIVIYPD 118 (189)
T ss_dssp TTTT----CCCEEEEETT
T ss_pred HHhc----CCcEEEEECC
Confidence 8 43 3477777643
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=95.87 E-value=0.055 Score=39.19 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=53.7
Q ss_pred hhHHHHHHHHhhcCCceEEeeCc--ccCcccchHHHHHHHHhcceEEEEeec--CCcCChhHHHHHHHHHHhhc
Q 036681 25 DNFTSHLVAALHDRNVKTFIDEE--IRRGDEISTAISDAIEASKISVIIFSE--DYASSKWCLNELLKILECKG 94 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v~~d~~--~~~G~~~~~~i~~ai~~S~~~I~v~S~--~~~~S~wc~~El~~~~~~~~ 94 (159)
..+...+.+.|+++|+.++.... ...+..+...-.++|++|+++|++++| .-..+.-+..|+..|....+
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK 99 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK 99 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC
Confidence 37889999999999999987554 222233444447999999999999997 44556778899999987655
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=93.68 E-value=0.61 Score=33.50 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=56.0
Q ss_pred CCCCeecEEEeccCC--ccchhHHHHHHHHhhcCCceEEeeCcccC-----cc-------cchHHHHHHHHhcceEEEEe
Q 036681 7 SSSCKYDVFINFGGG--DTRDNFTSHLVAALHDRNVKTFIDEEIRR-----GD-------EISTAISDAIEASKISVIIF 72 (159)
Q Consensus 7 ~~~~~yDVFISy~~~--D~~~~fv~~L~~~L~~~gi~v~~d~~~~~-----G~-------~~~~~i~~ai~~S~~~I~v~ 72 (159)
+.+++..|||+=.-. .........+.+.|+++| .|+.+....| |. .+...-.+.|++|+++|+++
T Consensus 7 ~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~ 85 (165)
T 2khz_A 7 GEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEV 85 (165)
T ss_dssp SSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEEC
Confidence 344456799984322 111225588999999999 8865443222 21 12233358999999999999
Q ss_pred ecCCcCChhHHHHHHHHHHhhc
Q 036681 73 SEDYASSKWCLNELLKILECKG 94 (159)
Q Consensus 73 S~~~~~S~wc~~El~~~~~~~~ 94 (159)
+ ..+.-+..|+..|....+
T Consensus 86 ~---~~d~Gt~~EiGyA~algK 104 (165)
T 2khz_A 86 T---QPSLGVGYELGRAVALGK 104 (165)
T ss_dssp S---SCCHHHHHHHHHHHHTCS
T ss_pred C---CCCCCHHHHHHHHHHCCC
Confidence 7 567889999999987654
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=91.48 E-value=1.6 Score=31.21 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=52.8
Q ss_pred cEEEec--cCCccchhHHHHHHHHhhcCCceEEeeCccc------Ccc-------cchHHHHHHHHhcceEEEEeecCCc
Q 036681 13 DVFINF--GGGDTRDNFTSHLVAALHDRNVKTFIDEEIR------RGD-------EISTAISDAIEASKISVIIFSEDYA 77 (159)
Q Consensus 13 DVFISy--~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~------~G~-------~~~~~i~~ai~~S~~~I~v~S~~~~ 77 (159)
-|||+= .+.+...++...+.+.|++.| .|+- ..+. .|+ .+.+.-.++|+.|+++|++++ .
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~-~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~ 78 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLT-EHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---Q 78 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECC-CC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---S
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccc-cccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---C
Confidence 366652 332223478899999999999 6754 2221 122 245566789999999999998 6
Q ss_pred CChhHHHHHHHHHHhhc
Q 036681 78 SSKWCLNELLKILECKG 94 (159)
Q Consensus 78 ~S~wc~~El~~~~~~~~ 94 (159)
.|.-...|+..|....+
T Consensus 79 ~d~Gt~~EiG~A~algk 95 (152)
T 4fyk_A 79 PSLGVGYELGRAVALGK 95 (152)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 68889999999987654
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=89.76 E-value=2.8 Score=30.12 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhhcC--CceEEeeCc-cc----Cccc----chHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhh
Q 036681 25 DNFTSHLVAALHDR--NVKTFIDEE-IR----RGDE----ISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECK 93 (159)
Q Consensus 25 ~~fv~~L~~~L~~~--gi~v~~d~~-~~----~G~~----~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~ 93 (159)
..+...+.+.|+.+ |+.+|...+ -. ++.. +...-.++|++|+++|.++. ....+..+..|+..|....
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence 46778899999865 899988654 21 2223 33444578999999999995 4456788999999998765
Q ss_pred cccCceeeeEE
Q 036681 94 GKKGQIVIPVF 104 (159)
Q Consensus 94 ~~~~~~IiPV~ 104 (159)
+ .|+.+.
T Consensus 98 k----PVi~~~ 104 (162)
T 3ehd_A 98 I----PVVALY 104 (162)
T ss_dssp C----CEEEEC
T ss_pred C----EEEEEE
Confidence 4 555543
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=88.29 E-value=3.5 Score=29.68 Aligned_cols=80 Identities=9% Similarity=0.072 Sum_probs=55.2
Q ss_pred cEEEecc--CCccchhHHHHHHHHhhcC--CceEEeeCc--c--------cCc--------ccchHHHHHHHHhcceEEE
Q 036681 13 DVFINFG--GGDTRDNFTSHLVAALHDR--NVKTFIDEE--I--------RRG--------DEISTAISDAIEASKISVI 70 (159)
Q Consensus 13 DVFISy~--~~D~~~~fv~~L~~~L~~~--gi~v~~d~~--~--------~~G--------~~~~~~i~~ai~~S~~~I~ 70 (159)
.|||.=. +.+. .....++.+.|+++ |+.+|...+ . ..| ..+.+.-.++|++|+++|+
T Consensus 9 kIYLAGP~F~~~~-~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA 87 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ-RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVF 87 (167)
T ss_dssp EEEEECCCSSHHH-HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEE
Confidence 4777521 2222 46889999999999 888887544 2 111 1233445578999999999
Q ss_pred EeecCCcCChhHHHHHHHHHHhhc
Q 036681 71 IFSEDYASSKWCLNELLKILECKG 94 (159)
Q Consensus 71 v~S~~~~~S~wc~~El~~~~~~~~ 94 (159)
++.+.- .+.-+..|+..|....+
T Consensus 88 ~ldg~~-~D~GTa~EiGyA~algK 110 (167)
T 1s2d_A 88 LYDMDQ-LDDGSAFXIGFMRAMHK 110 (167)
T ss_dssp EEESSS-CCHHHHHHHHHHHHTTC
T ss_pred ECCCCC-CCCCceeehhhHhhCCC
Confidence 998644 46788899999987654
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=76.08 E-value=8.4 Score=26.69 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=40.8
Q ss_pred EEEeccCCccchhHHHHHHHHhhcCCceEEee-------------Cc-cc---Cc-c-cchHHHHHHHHhcceEEEEeec
Q 036681 14 VFINFGGGDTRDNFTSHLVAALHDRNVKTFID-------------EE-IR---RG-D-EISTAISDAIEASKISVIIFSE 74 (159)
Q Consensus 14 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d-------------~~-~~---~G-~-~~~~~i~~ai~~S~~~I~v~S~ 74 (159)
||||.+..|. .-+..+...|...|++++-- -. +. .| + .-.++|.+.|++-.+-++|.+|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999988773 34455777888888887621 11 11 12 1 0004688889999999999988
Q ss_pred CCc
Q 036681 75 DYA 77 (159)
Q Consensus 75 ~~~ 77 (159)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 18
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=74.98 E-value=10 Score=26.87 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=48.8
Q ss_pred hhHHHHHHHHhhcCCc----eEEeeCc--c--------cC---c----ccchHHHHHHHHhcceEEEEeecCCcCChhHH
Q 036681 25 DNFTSHLVAALHDRNV----KTFIDEE--I--------RR---G----DEISTAISDAIEASKISVIIFSEDYASSKWCL 83 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi----~v~~d~~--~--------~~---G----~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~ 83 (159)
.....++.+.|+.+|. .+|...+ . .. + ..+...-.++|++|+++|.++... ..+.-+.
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~-~~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPD-EEDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGG-GCCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCC-CCCccHH
Confidence 4678899999999985 6666443 2 11 1 123344457899999999999742 3567888
Q ss_pred HHHHHHHHhhc
Q 036681 84 NELLKILECKG 94 (159)
Q Consensus 84 ~El~~~~~~~~ 94 (159)
.|+..|....+
T Consensus 97 ~EiGyA~A~gk 107 (157)
T 1f8y_A 97 MELGYALSQGK 107 (157)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 99999987765
No 19
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=65.85 E-value=30 Score=23.81 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=36.8
Q ss_pred ecE-EEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEE
Q 036681 12 YDV-FINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVII 71 (159)
Q Consensus 12 yDV-FISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v 71 (159)
.+| .|.-+... ..++..+...|...|+++=+|. ..+++.+...|.++-. ...+.|+|
T Consensus 9 ~Qv~IlpVs~~~--~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 9 VDCSVIVVNKQT--KDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CTEEEEESSSGG--GHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CeEEEEEeCcch--HHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 444 33344333 5899999999999999998765 1236677666665544 44444444
No 20
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=64.84 E-value=25 Score=23.61 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=18.7
Q ss_pred hHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHH
Q 036681 26 NFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIE 63 (159)
Q Consensus 26 ~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~ 63 (159)
.+...+.+.+++..-.+++-.- + +.+.+.+.|.++.+
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~ 51 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKK 51 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHH
Confidence 3455566666655444444333 3 34455555555544
No 21
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=57.23 E-value=2.4 Score=27.18 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=16.3
Q ss_pred eccCCccchhHHHHHHHHhhcCC
Q 036681 17 NFGGGDTRDNFTSHLVAALHDRN 39 (159)
Q Consensus 17 Sy~~~D~~~~fv~~L~~~L~~~g 39 (159)
|||+.....+|+..|++.|++++
T Consensus 23 S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 23 SWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp CCEETTTEEHHHHHHHHHHHHHT
T ss_pred eeEcCCCCCHHHHHHHHHHHHhC
Confidence 34444445789999999998654
No 22
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=56.31 E-value=5 Score=26.02 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=22.0
Q ss_pred CCCCeecEEEecc---------CCccchhHHHHHHHHhhcCC
Q 036681 7 SSSCKYDVFINFG---------GGDTRDNFTSHLVAALHDRN 39 (159)
Q Consensus 7 ~~~~~yDVFISy~---------~~D~~~~fv~~L~~~L~~~g 39 (159)
+.|..-|.+++|+ +.+...+|+..|++.|+++|
T Consensus 6 ~iP~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 6 KIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp CBCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 4455667777775 33345688888888887654
No 23
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=55.63 E-value=11 Score=23.22 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=34.7
Q ss_pred HHHHHHhhcCCceEEeeCc-cc---CcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhc
Q 036681 29 SHLVAALHDRNVKTFIDEE-IR---RGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKG 94 (159)
Q Consensus 29 ~~L~~~L~~~gi~v~~d~~-~~---~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~ 94 (159)
..|...|++.||.+|.+.+ +. |-..+.+++...+...+ .|+...++...
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K-----------------~ell~~L~~~~ 60 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR-----------------HELIALLRQLQ 60 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH-----------------HHHHHHHHHHC
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH-----------------HHHHHHHHHhh
Confidence 4566889999999999987 43 44456777777766543 57777776643
No 24
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=53.59 E-value=39 Score=22.86 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=44.0
Q ss_pred HHHHHhhcCCceEEeeCcccCcccc-hHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEEEeeC
Q 036681 30 HLVAALHDRNVKTFIDEEIRRGDEI-STAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVD 108 (159)
Q Consensus 30 ~L~~~L~~~gi~v~~d~~~~~G~~~-~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~~~v~ 108 (159)
-+...|+.+|+.|.. .|.+. .+++.+++.+.+.-++.+|-......--..++...++.. +..=+||+.+-.
T Consensus 22 ~v~~~l~~~G~~Vi~-----lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~---g~~~i~v~vGG~ 93 (137)
T 1ccw_A 22 ILDHAFTNAGFNVVN-----IGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEA---GLEGILLYVGGN 93 (137)
T ss_dssp HHHHHHHHTTCEEEE-----EEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHT---TCTTCEEEEEES
T ss_pred HHHHHHHHCCCEEEE-----CCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhc---CCCCCEEEEECC
Confidence 344667899999964 33222 457888888888888888876654333334444444432 211278888754
Q ss_pred C
Q 036681 109 P 109 (159)
Q Consensus 109 p 109 (159)
|
T Consensus 94 ~ 94 (137)
T 1ccw_A 94 I 94 (137)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=50.99 E-value=2.8 Score=27.23 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=22.4
Q ss_pred CCCCeecEEEeccC---------CccchhHHHHHHHHhhcCC
Q 036681 7 SSSCKYDVFINFGG---------GDTRDNFTSHLVAALHDRN 39 (159)
Q Consensus 7 ~~~~~yDVFISy~~---------~D~~~~fv~~L~~~L~~~g 39 (159)
+.|..-|.+++|+. .+...+|+..|++.|+++|
T Consensus 8 ~iP~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 8 YIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp CCCTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred ccCCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 44556788887753 3334688888988887643
No 26
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=48.90 E-value=3.6 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=21.6
Q ss_pred CCCeecEEEecc---------CCccchhHHHHHHHHhhcCC
Q 036681 8 SSCKYDVFINFG---------GGDTRDNFTSHLVAALHDRN 39 (159)
Q Consensus 8 ~~~~yDVFISy~---------~~D~~~~fv~~L~~~L~~~g 39 (159)
.|..-|.+++|+ +.....+|+..|++.|+++|
T Consensus 13 iP~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 13 IPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 345567777775 33334688999988887654
No 27
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=48.40 E-value=3.8 Score=27.11 Aligned_cols=31 Identities=10% Similarity=0.273 Sum_probs=21.2
Q ss_pred CCeecEEEecc---------CCccchhHHHHHHHHhhcCC
Q 036681 9 SCKYDVFINFG---------GGDTRDNFTSHLVAALHDRN 39 (159)
Q Consensus 9 ~~~yDVFISy~---------~~D~~~~fv~~L~~~L~~~g 39 (159)
|..-|.+++|+ +.....+|+..|++.|++++
T Consensus 12 P~~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 12 PTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CSSCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 45567777764 34445789999999887644
No 28
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=46.81 E-value=78 Score=23.76 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEEEeeC
Q 036681 29 SHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVD 108 (159)
Q Consensus 29 ~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~~~v~ 108 (159)
.-+...|+.+|+.|.. +.+..+ .+++.+++...+.-++.+|-....+.--+.++...++. .+.. +||+.+..
T Consensus 141 ~iva~~L~~~G~~Vi~---LG~~vp-~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~---~~~~-~~v~vGG~ 212 (258)
T 2i2x_B 141 NIVTALLRANGYNVVD---LGRDVP-AEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLE---NGIK-IPFACGGG 212 (258)
T ss_dssp HHHHHHHHHTTCEEEE---EEEECC-SHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHT---TTCC-CCEEEEST
T ss_pred HHHHHHHHHCCCEEEE---CCCCCC-HHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHh---cCCC-CcEEEECc
Confidence 3445567899999853 222222 34777888888888888886655543334444444433 3334 89998754
Q ss_pred C
Q 036681 109 P 109 (159)
Q Consensus 109 p 109 (159)
+
T Consensus 213 ~ 213 (258)
T 2i2x_B 213 A 213 (258)
T ss_dssp T
T ss_pred c
Confidence 3
No 29
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=46.80 E-value=8.1 Score=25.49 Aligned_cols=61 Identities=16% Similarity=0.435 Sum_probs=36.1
Q ss_pred CCcCChhHHHHHHHHHHhhc--ccC--ceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHH
Q 036681 75 DYASSKWCLNELLKILECKG--KKG--QIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTE 146 (159)
Q Consensus 75 ~~~~S~wc~~El~~~~~~~~--~~~--~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~ 146 (159)
.|+-.....+|+.+++.|.+ .++ .+|+|.-++...+.+...- +. .+ .-.+.+.+|++||..
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkiagsa---------nw-tf-yakedfeqwkealdv 100 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAGSA---------NW-TF-YAKEDFEQWKEALDV 100 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCTTCS---------SE-EE-SSHHHHHHHHHHHHH
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhcccc---------ce-eE-EeHhhHHHHHHHHHH
Confidence 56666678899999999864 222 4778876543333332110 00 01 125788889988753
No 30
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=46.54 E-value=43 Score=25.68 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=48.1
Q ss_pred hhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcc
Q 036681 25 DNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGK 95 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~ 95 (159)
..++.++.+.|...|+.+-...+ +.-|--.. +...-.+.++-|+-+|-+...+.--..+|.++++..++
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd 164 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRD 164 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 48999999999999997654333 55554433 22233456777888888877777666799999977543
No 31
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=45.40 E-value=36 Score=27.58 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=37.4
Q ss_pred eecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEEee
Q 036681 11 KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVIIFS 73 (159)
Q Consensus 11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v~S 73 (159)
.+||+|..-+++. ...+..|++.|+.+|++|-+|.. +..+...+..|-. +.... +|+.
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~-iiiG 390 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFA-VIFG 390 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEE-EEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEE-EEEC
Confidence 4889866555443 46789999999999999998764 2334444444333 45544 4444
No 32
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=44.61 E-value=60 Score=26.30 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=38.9
Q ss_pred CCeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEEe
Q 036681 9 SCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVIIF 72 (159)
Q Consensus 9 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v~ 72 (159)
+...||++...+++. ...+..|+..|+++|+++-+|.. .+..+...+..|=+ +.+ .++|+
T Consensus 364 ~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~-~~vii 424 (464)
T 4g84_A 364 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIP-LVAII 424 (464)
T ss_dssp SCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC--SSCCHHHHHHHHHHHTCC-EEEEC
T ss_pred cccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCC-EEEEE
Confidence 456899998877664 45678899999999999976542 22234445554444 344 44444
No 33
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=44.26 E-value=30 Score=27.75 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=37.7
Q ss_pred eecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEE
Q 036681 11 KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVII 71 (159)
Q Consensus 11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v 71 (159)
.++|+|---+++. ...+..|+..|++.|++|-+|.+ +..+...+..|-. +....|+|
T Consensus 298 p~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 298 PVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp SSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEE
T ss_pred CeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 4889887655443 57889999999999999999874 2344444444443 34444433
No 34
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=43.53 E-value=27 Score=28.74 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=31.6
Q ss_pred eecEEEeccC--CccchhHHHHHHHHhhcCCceEEeeCc-ccCcccch
Q 036681 11 KYDVFINFGG--GDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEIS 55 (159)
Q Consensus 11 ~yDVFISy~~--~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~ 55 (159)
.++|+|---+ .+.....+..|++.|+..|+.|-+|.+ -.+|..+.
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~ 412 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFA 412 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHH
Confidence 4788876432 222357889999999999999999986 44444443
No 35
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=42.85 E-value=63 Score=26.87 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHh-cceEEEEee
Q 036681 9 SCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEA-SKISVIIFS 73 (159)
Q Consensus 9 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~-S~~~I~v~S 73 (159)
+..+||||..-+++. ...+..|+..|+++|+++-++.. .+..+...+..|=+. .+ .++|+.
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~-~~viiG 478 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIP-LVAIIG 478 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS--SSCCHHHHHHHHHHHCCC-EEEEEC
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCC-EEEEEC
Confidence 356899988766554 45688999999999999976542 222344455554443 44 444443
No 36
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=42.09 E-value=48 Score=27.29 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=40.4
Q ss_pred CeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecC
Q 036681 10 CKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSED 75 (159)
Q Consensus 10 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~ 75 (159)
..+||+|..-+++. ...+..+...|+++|++|-+|.. +..+...+..|-..---.++++.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 35899987655553 46789999999999999988764 2344445555444333345555543
No 37
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=42.04 E-value=5.8 Score=26.86 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=20.7
Q ss_pred CCeecEEEecc---------CCccchhHHHHHHHHhhcCC
Q 036681 9 SCKYDVFINFG---------GGDTRDNFTSHLVAALHDRN 39 (159)
Q Consensus 9 ~~~yDVFISy~---------~~D~~~~fv~~L~~~L~~~g 39 (159)
|..-|++++|+ ......+|+..|++.|++.|
T Consensus 13 P~~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 13 PVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp CTTTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 34566676664 33335689999999887644
No 38
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=39.64 E-value=93 Score=21.57 Aligned_cols=65 Identities=8% Similarity=0.049 Sum_probs=35.5
Q ss_pred hhHHHHHHHHhhcCCceEEe-eCc-ccCccc---------c-hHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHh
Q 036681 25 DNFTSHLVAALHDRNVKTFI-DEE-IRRGDE---------I-STAISDAIEASKISVIIFSEDYASSKWCLNELLKILEC 92 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v~~-d~~-~~~G~~---------~-~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~ 92 (159)
+..+..+.+.|+..|+.+-+ +-. ...... . ...+...+.+++ .|++.||-|..+. -..+..++++
T Consensus 20 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD-~ii~gsP~y~~~~--~~~lk~~ld~ 96 (200)
T 2a5l_A 20 AEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCA-GLALGSPTRFGNM--ASPLKYFLDG 96 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCS-EEEEEEECBTTBC--CHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCC-EEEEEcChhccCc--cHHHHHHHHH
Confidence 57888888889888876532 221 111100 0 002256677888 5566788887542 2234444444
No 39
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=37.39 E-value=6.8 Score=26.49 Aligned_cols=31 Identities=10% Similarity=0.247 Sum_probs=21.4
Q ss_pred CCeecEEEeccC---------CccchhHHHHHHHHhhcCC
Q 036681 9 SCKYDVFINFGG---------GDTRDNFTSHLVAALHDRN 39 (159)
Q Consensus 9 ~~~yDVFISy~~---------~D~~~~fv~~L~~~L~~~g 39 (159)
|..-|++++|+. .....+|+..|++.|++.+
T Consensus 13 P~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 13 PTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp CSSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 456677777753 3334789999999887654
No 40
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=36.79 E-value=22 Score=23.71 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHHHHhcccc
Q 036681 132 VHPENVQKWRDGLTEASLIV 151 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~~~~ 151 (159)
.+.++.++|.+||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 35789999999999998763
No 41
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=36.71 E-value=1e+02 Score=21.30 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=51.6
Q ss_pred ecEEEeccCCccchhH-HHHHHHHhhcCCceEEeeCcccCcccc-hHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHH
Q 036681 12 YDVFINFGGGDTRDNF-TSHLVAALHDRNVKTFIDEEIRRGDEI-STAISDAIEASKISVIIFSEDYASSKWCLNELLKI 89 (159)
Q Consensus 12 yDVFISy~~~D~~~~f-v~~L~~~L~~~gi~v~~d~~~~~G~~~-~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~ 89 (159)
.-|++.=-+.|.. .+ ..-+...|+..|+.|.. .|.+. .+++.+++.+.+.-++.+|-......--+.++...
T Consensus 19 ~~vlla~~~gd~H-diG~~~va~~l~~~G~eVi~-----lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGH-DRGAKVVARALRDAGFEVVY-----TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSC-CHHHHHHHHHHHHTTCEEEC-----CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCcc-HHHHHHHHHHHHHCCCEEEE-----CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHH
Confidence 3466654444542 22 24455667899999963 33333 35788888988888888886655433333344444
Q ss_pred HHhhcccCceeeeEEEeeCC
Q 036681 90 LECKGKKGQIVIPVFYEVDP 109 (159)
Q Consensus 90 ~~~~~~~~~~IiPV~~~v~p 109 (159)
++. .+..=+||+.+..+
T Consensus 93 L~~---~g~~~i~v~vGG~~ 109 (161)
T 2yxb_A 93 LRE---LGADDIPVVLGGTI 109 (161)
T ss_dssp HHH---TTCTTSCEEEEECC
T ss_pred HHh---cCCCCCEEEEeCCC
Confidence 433 22112788886544
No 42
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=36.70 E-value=80 Score=26.00 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=40.0
Q ss_pred CeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEee
Q 036681 10 CKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFS 73 (159)
Q Consensus 10 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S 73 (159)
...||||...+++. ...+-.+...|+++|++|-++.. +..+...+..|-+.---.++++.
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 35788887666654 35678899999999999987642 33456566666554334555554
No 43
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=36.49 E-value=30 Score=27.81 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=36.7
Q ss_pred eecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEEee
Q 036681 11 KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVIIFS 73 (159)
Q Consensus 11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v~S 73 (159)
.++|+|..-+++. ...+..|+..|+.+|++|-+|.. +..+...+..|-. ... .++++.
T Consensus 329 p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p-~~iiig 387 (420)
T 1qe0_A 329 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAK-FTIVIG 387 (420)
T ss_dssp CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCS-EEEEEC
T ss_pred CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCC-EEEEEC
Confidence 4789877544332 46788999999999999998874 2234444444433 344 444554
No 44
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=35.76 E-value=41 Score=28.11 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=32.4
Q ss_pred CeecEEEecc-C-Cc--cchhHHHHHHHHhhcCCceEEeeCc-ccCcccch
Q 036681 10 CKYDVFINFG-G-GD--TRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEIS 55 (159)
Q Consensus 10 ~~yDVFISy~-~-~D--~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~ 55 (159)
..|+|+|--- . .+ .-...+..|++.|+..|++|-+|.+ -.+|..+.
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~ 363 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYY 363 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHH
Confidence 3478877654 3 31 2357889999999999999999986 44454443
No 45
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=35.43 E-value=39 Score=27.12 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=37.1
Q ss_pred eecEEEeccCCccchhHHHHHHHHhhcC--CceEEeeCcccCcccchHHHHHHHH-hcceEEEE
Q 036681 11 KYDVFINFGGGDTRDNFTSHLVAALHDR--NVKTFIDEEIRRGDEISTAISDAIE-ASKISVII 71 (159)
Q Consensus 11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v 71 (159)
.+||+|..-+++. ...+..|++.|+++ |++|-+|.. +..+...+..|-. .....|+|
T Consensus 327 p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 327 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp SCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 4789888765543 46788999999999 999998764 2234444444333 45544443
No 46
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=35.26 E-value=91 Score=24.17 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=34.1
Q ss_pred hHHHHHHHHhhcCC----ceEEeeCcccCcccchHHHHHHHHh---cceEEEEeecCCcCC--hhHHHHHHHHHHh
Q 036681 26 NFTSHLVAALHDRN----VKTFIDEEIRRGDEISTAISDAIEA---SKISVIIFSEDYASS--KWCLNELLKILEC 92 (159)
Q Consensus 26 ~fv~~L~~~L~~~g----i~v~~d~~~~~G~~~~~~i~~ai~~---S~~~I~v~S~~~~~S--~wc~~El~~~~~~ 92 (159)
..+..|.+.|...| +.|.+- +.-|.+...+..+.+.+ .+++++.+.|.|..+ .-..+++..++..
T Consensus 62 ~q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~~ 135 (310)
T 2h1v_A 62 QQAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 135 (310)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHHh
Confidence 34566667775443 455443 34444444444444432 456777777877543 3344555555543
No 47
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=34.87 E-value=48 Score=22.84 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=28.6
Q ss_pred CcccchHHHHHHHHhcceEEEEeecCCcCChhHHH---HHHHHHHhhcccCceeeeEEEeeCCc
Q 036681 50 RGDEISTAISDAIEASKISVIIFSEDYASSKWCLN---ELLKILECKGKKGQIVIPVFYEVDPS 110 (159)
Q Consensus 50 ~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~---El~~~~~~~~~~~~~IiPV~~~v~p~ 110 (159)
-|+.+.. ..+++ +++|+.|--... ..||.. +|..+.+..+..+..|..|+..++|.
T Consensus 21 ~G~~v~l---~d~~G-k~vll~F~~t~C-p~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 21 DGKPFGT---KDLKG-KVWVADFMFTNC-QTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TSCEEEH---HHHTT-SCEEEEEECTTC-SSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCEEeH---HHhCC-CEEEEEEECCCC-CCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 4555542 22444 444444432222 247755 44444444334455677788888875
No 48
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=33.48 E-value=64 Score=21.44 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=33.6
Q ss_pred HHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHH
Q 036681 33 AALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLK 88 (159)
Q Consensus 33 ~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~ 88 (159)
.-++-.|+.+|.. ..-+.+.+.+.+.+++ ++.|++++++.+.. +.+++..
T Consensus 15 ~GFrLaGie~~~v---~~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 15 SPFRLFGFDVQHG---TTKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp GGGGGGTCEEECC---CSHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHHcCCeEEEe---CCHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 4456678888743 2334556677777777 99999999987763 4444544
No 49
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=33.44 E-value=60 Score=23.19 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=24.5
Q ss_pred EEeccCCcc--chhHHHHHHHHhhcCCceEEee
Q 036681 15 FINFGGGDT--RDNFTSHLVAALHDRNVKTFID 45 (159)
Q Consensus 15 FISy~~~D~--~~~fv~~L~~~L~~~gi~v~~d 45 (159)
||.+-|-|. +.+.+..|.+.|+.+|+.+..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 788876664 3678899999999999987653
No 50
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=33.12 E-value=33 Score=28.24 Aligned_cols=49 Identities=6% Similarity=0.196 Sum_probs=31.6
Q ss_pred CccchhHHHHHHHHhhcCCceEEeeCc-cc----CcccchHHHHHHHHhcceEE
Q 036681 21 GDTRDNFTSHLVAALHDRNVKTFIDEE-IR----RGDEISTAISDAIEASKISV 69 (159)
Q Consensus 21 ~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~----~G~~~~~~i~~ai~~S~~~I 69 (159)
.|.|+.-+-.|.+.|..+|..|...+- .. .|..+.+.+.+++++++++|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 466778888899999999988766443 32 23344567888888998754
No 51
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=32.84 E-value=92 Score=21.55 Aligned_cols=52 Identities=2% Similarity=0.084 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhhc-CCceEEe-eCc-ccCcc------------cchHHHHHHHHhcceEEEEeecCCcCC
Q 036681 25 DNFTSHLVAALHD-RNVKTFI-DEE-IRRGD------------EISTAISDAIEASKISVIIFSEDYASS 79 (159)
Q Consensus 25 ~~fv~~L~~~L~~-~gi~v~~-d~~-~~~G~------------~~~~~i~~ai~~S~~~I~v~S~~~~~S 79 (159)
+..+..+.+.|+. .|+.+-+ +-. ..++. ... + ...+.+++ .|++.||-|..+
T Consensus 16 ~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~aD-~ii~gsP~y~~~ 82 (198)
T 3b6i_A 16 ETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVA-T-PQELADYD-AIIFGTPTRFGN 82 (198)
T ss_dssp HHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBC-C-GGGGGGCS-EEEEEEEEETTE
T ss_pred HHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchh-h-HHHHHHCC-EEEEEeChhcCC
Confidence 5788889999988 8876532 221 21110 000 1 34567777 567778888654
No 52
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=32.62 E-value=61 Score=26.71 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=41.6
Q ss_pred eecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEee
Q 036681 11 KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFS 73 (159)
Q Consensus 11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S 73 (159)
..||+|-.-+++. ...+..+...|+++|++|-+|.. -..+..+...+..|-+.---.++|+.
T Consensus 354 p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 354 GVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 4789876555443 46788999999999999998763 11356777777776654333455554
No 53
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=32.46 E-value=53 Score=26.78 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=35.6
Q ss_pred EEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccC--c-ccchHHHHHHHHhcceEEEEe
Q 036681 14 VFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRR--G-DEISTAISDAIEASKISVIIF 72 (159)
Q Consensus 14 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~--G-~~~~~~i~~ai~~S~~~I~v~ 72 (159)
|-|=|...|-...++..+.++++++|+.+-....+.. + .++...+.+.|+.+..-++|+
T Consensus 188 V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~ 249 (479)
T 3sm9_A 188 VSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVL 249 (479)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEE
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEE
Confidence 4444554444467889999999999998766555433 2 334444446676555444443
No 54
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=31.89 E-value=1.1e+02 Score=19.98 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=32.6
Q ss_pred Ccc-cchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEEEeeCCccccc
Q 036681 50 RGD-EISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCY 114 (159)
Q Consensus 50 ~G~-~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~~~v~p~~v~~ 114 (159)
||. .+.......+..++.+|+|++..-..| ..++...++........-+||++=....|+..
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 63 AGLERFRALAPMYYRGSAAAIIVYDITKEET---FSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred CCchhhhcccHhhCcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 563 344455677889999999998654332 33333333322111223355554345566543
No 55
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=31.35 E-value=30 Score=23.05 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHHHHhcccc
Q 036681 132 VHPENVQKWRDGLTEASLIV 151 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~~~~ 151 (159)
.++++.+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 35789999999999998874
No 56
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=30.94 E-value=82 Score=24.72 Aligned_cols=99 Identities=12% Similarity=0.250 Sum_probs=55.3
Q ss_pred cEEEeccCCcc--chhHHHHHHHHhhcCCceEEeeCc---ccCcccchHHHHHHHHhcceEEEEeecCCcCCh-------
Q 036681 13 DVFINFGGGDT--RDNFTSHLVAALHDRNVKTFIDEE---IRRGDEISTAISDAIEASKISVIIFSEDYASSK------- 80 (159)
Q Consensus 13 DVFISy~~~D~--~~~fv~~L~~~L~~~gi~v~~d~~---~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~------- 80 (159)
-|||-+-|-|. +.+-+.+|...|..+|++|..-.. -..+..+...+..++-... -|+|+-..+-++.
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G-~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAG-EFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTT-CEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCC-eEEEEECCcchHHHHHHHhc
Confidence 38999976665 357889999999999998865332 2223344444444543333 3344444432221
Q ss_pred hHH-HHHHHHHHh-------hcccCceeeeEEEeeCCccc
Q 036681 81 WCL-NELLKILEC-------KGKKGQIVIPVFYEVDPSDV 112 (159)
Q Consensus 81 wc~-~El~~~~~~-------~~~~~~~IiPV~~~v~p~~v 112 (159)
.|. .|....++. ....+..++-+|++++|.+-
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 111 122222222 12245688888889998774
No 57
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.75 E-value=31 Score=22.07 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHHhccc
Q 036681 133 HPENVQKWRDGLTEASLI 150 (159)
Q Consensus 133 ~~~~~~~W~~al~~v~~~ 150 (159)
+++..++|..||..++.+
T Consensus 104 s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 104 SPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 578999999999998765
No 58
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=30.66 E-value=70 Score=26.64 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=20.9
Q ss_pred ccchhHHHHHHHHhhcCCceEE--eeC
Q 036681 22 DTRDNFTSHLVAALHDRNVKTF--IDE 46 (159)
Q Consensus 22 D~~~~fv~~L~~~L~~~gi~v~--~d~ 46 (159)
|.-..++..|++.|++.||+|. +|+
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Dd 387 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLE 387 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGS
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecC
Confidence 3346789999999999999998 665
No 59
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=30.50 E-value=75 Score=22.48 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhhcCCceEEe-eCc-ccCcc----------------cchHHHHHHHHhcceEEEEeecCCcCC
Q 036681 25 DNFTSHLVAALHDRNVKTFI-DEE-IRRGD----------------EISTAISDAIEASKISVIIFSEDYASS 79 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v~~-d~~-~~~G~----------------~~~~~i~~ai~~S~~~I~v~S~~~~~S 79 (159)
+.++..+.+.|+..|..+-+ +-. ..+.. ++...+...+.+++ .|++-||-|..+
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD-~ii~gsP~y~~~ 92 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAE-AIVFSSPTRFGG 92 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCS-EEEEEEEEETTE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCC-EEEEEcCccccC
Confidence 57888888889888876532 221 21100 11124566788888 566678888754
No 60
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=30.20 E-value=79 Score=21.23 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=47.8
Q ss_pred EeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChh-HHHHHHHHHHhh
Q 036681 16 INFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKW-CLNELLKILECK 93 (159)
Q Consensus 16 ISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~w-c~~El~~~~~~~ 93 (159)
|.-.+. ....-...|....+.+|+.+|.|.+ .+|+.+...|.+.+.++. ...+.+.+..=.- ..++|..++...
T Consensus 30 I~t~Gs-i~~~~l~~I~~~~~~r~VIi~TD~D-~~GekIRk~i~~~lp~~~--hafi~r~~~gVE~a~~~~I~~aL~~~ 104 (119)
T 2fcj_A 30 VCTNGT-ISDARLEELADELEGYDVYLLADAD-EAGEKLRRQFRRMFPEAE--HLYIDRAYREVAAAPIWHLAQVLLRA 104 (119)
T ss_dssp EECCSC-CCHHHHHHHHHHTTTSEEEEECCSS-HHHHHHHHHHHHHCTTSE--EECCCTTTCSTTTSCHHHHHHHHHHT
T ss_pred EEeCCc-cCHHHHHHHHHHhcCCCEEEEECCC-ccHHHHHHHHHHHCCCCc--EEeccCCccCcccCCHHHHHHHHHhc
Confidence 333443 3334556777777788898888875 678888888888888774 5556665552222 235677777664
No 61
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=30.18 E-value=1.8e+02 Score=22.14 Aligned_cols=71 Identities=8% Similarity=0.149 Sum_probs=44.0
Q ss_pred hhcC-CceEEeeCcccCcccc-hHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccC-ceeeeEEEeeCCc
Q 036681 35 LHDR-NVKTFIDEEIRRGDEI-STAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKG-QIVIPVFYEVDPS 110 (159)
Q Consensus 35 L~~~-gi~v~~d~~~~~G~~~-~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~-~~IiPV~~~v~p~ 110 (159)
|+.+ |+.|.. .|... .+++.+++.+-+.-++.+|--.....-.+.++...++..++.+ ..=+||+.+-.+-
T Consensus 152 L~~~~G~eVi~-----LG~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~ 225 (262)
T 1xrs_B 152 LERYEMIDAYN-----LGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRI 225 (262)
T ss_dssp GGGCTTEEEEE-----CCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTC
T ss_pred HHhcCCcEEEE-----CCCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcC
Confidence 8888 999853 34333 3578888888888888888877763333444444444332222 2237788776553
No 62
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=29.11 E-value=39 Score=21.24 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHHHHhccc
Q 036681 132 VHPENVQKWRDGLTEASLI 150 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~~~ 150 (159)
.+++..++|..||.+++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 3578999999999988764
No 63
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.72 E-value=1.4e+02 Score=20.33 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=38.5
Q ss_pred EEEeccCC-ccchhHHHHHHHHhhcCCceEEeeCcccCccc-chHHHHHHHHhcceEEEEeecCCcCC
Q 036681 14 VFINFGGG-DTRDNFTSHLVAALHDRNVKTFIDEEIRRGDE-ISTAISDAIEASKISVIIFSEDYASS 79 (159)
Q Consensus 14 VFISy~~~-D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~-~~~~i~~ai~~S~~~I~v~S~~~~~S 79 (159)
|-|-|.+. ..-+..+..+.+.|+..|+.+-+ +...+. -.+.+...+.+++ .|++-||.|...
T Consensus 7 v~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~---~~~~~~~~~~~~~~~~~~~d-~ii~Gspty~g~ 70 (159)
T 3fni_A 7 IGVFYVSEYGYSDRLAQAIINGITKTGVGVDV---VDLGAAVDLQELRELVGRCT-GLVIGMSPAASA 70 (159)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCEEEE---EESSSCCCHHHHHHHHHTEE-EEEEECCBTTSH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHCCCeEEE---EECcCcCCHHHHHHHHHhCC-EEEEEcCcCCCC
Confidence 55555333 22268899999999999987633 122222 2345556677777 566778998753
No 64
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=28.20 E-value=1.6e+02 Score=21.21 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=40.6
Q ss_pred cEEEeccCCc-cchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHH
Q 036681 13 DVFINFGGGD-TRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNE 85 (159)
Q Consensus 13 DVFISy~~~D-~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~E 85 (159)
=+||-|...+ .....+..+.++|++-|+.+-.-. +.. .-.+.+.+.|++++.+++ |. -++..++..
T Consensus 30 i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~-i~~--~~~~~~~~~l~~ad~I~l---~G-G~~~~l~~~ 96 (206)
T 3l4e_A 30 VTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD-IAT--ESLGEITTKLRKNDFIYV---TG-GNTFFLLQE 96 (206)
T ss_dssp EEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC-TTT--SCHHHHHHHHHHSSEEEE---CC-SCHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ecC--CChHHHHHHHHhCCEEEE---CC-CCHHHHHHH
Confidence 3699997652 124688889999999998764321 221 223456678899887554 33 444444443
No 65
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=27.73 E-value=13 Score=23.20 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=21.6
Q ss_pred HHHhcceEEEEeecCCcCChhHHHHHHHHHHh
Q 036681 61 AIEASKISVIIFSEDYASSKWCLNELLKILEC 92 (159)
Q Consensus 61 ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~ 92 (159)
-+.++++.++|+|++-.-..||-..+..++++
T Consensus 36 vLCdaeV~livfs~~gk~~~~~s~~~~~il~r 67 (77)
T 1egw_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (77)
T ss_dssp HHTTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred cccCCeEEEEEECCCCCEeeCCCCCHHHHHHH
Confidence 46789999999998755444544445555554
No 66
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=27.59 E-value=1.6e+02 Score=25.75 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=44.3
Q ss_pred hHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEEE
Q 036681 26 NFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFY 105 (159)
Q Consensus 26 ~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~~ 105 (159)
..+..|..+|++.|+.|.... +..+.+...-.++++..+|+|-+-. ..++...++... .=||||+
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a~------s~~Da~~~i~~~~~i~avIld~d~~-----~~~ll~~Ir~~~----~~iPVFl 81 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYPN------DRDDLLKLIENNARLCGVIFDWDKY-----NLELCEEISKMN----ENLPLYA 81 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECCS------SHHHHHHHHHHCTTEEEEEEEHHHH-----HHHHHHHHHHHC----TTCEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEeC------CHHHHHHHHHhCCCceEEEEecccc-----HHHHHHHHHHhC----CCCCEEE
Confidence 567899999999999996533 3333333344578899999975432 245555554432 5688887
Q ss_pred eeCC
Q 036681 106 EVDP 109 (159)
Q Consensus 106 ~v~p 109 (159)
-.+.
T Consensus 82 ~~~~ 85 (715)
T 3n75_A 82 FANT 85 (715)
T ss_dssp ECCT
T ss_pred EecC
Confidence 4443
No 67
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=27.56 E-value=66 Score=26.40 Aligned_cols=61 Identities=10% Similarity=0.205 Sum_probs=41.2
Q ss_pred CCccchhHHHHHHHHhhcC-CceEEeeCc-ccCcccchHHHHHHHHhcceEEEEee-cCCcCChh
Q 036681 20 GGDTRDNFTSHLVAALHDR-NVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFS-EDYASSKW 81 (159)
Q Consensus 20 ~~D~~~~fv~~L~~~L~~~-gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S-~~~~~S~w 81 (159)
..|.|+.-+-.|.+.|.++ |..|...+- .... .....+.+++++++.+|++.. +.|..=+|
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 392 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSDHSEFKNLSD 392 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSCCGGGTSCCG
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecCCHHHhccCH
Confidence 4577888899999999999 998876554 4332 334466888999997655543 23444333
No 68
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=26.66 E-value=58 Score=27.40 Aligned_cols=61 Identities=11% Similarity=0.246 Sum_probs=37.8
Q ss_pred eecEEEeccC-C-ccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEEeecC
Q 036681 11 KYDVFINFGG-G-DTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVIIFSED 75 (159)
Q Consensus 11 ~yDVFISy~~-~-D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v~S~~ 75 (159)
.++|+|---+ + +.-...+..|++.|++.|+++-+|.+ +..+...+..|-. .... ++++.++
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~---~~~~g~k~~~a~~~g~p~-~iivG~~ 533 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR---NERAGVKFADADLIGCPI-RITVGKK 533 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHCCSE-EEEECGG
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC---CCCHhHHHHHHHhcCCCE-EEEEccc
Confidence 3788876544 2 22256789999999999999999875 2234444444433 4444 4444443
No 69
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=26.63 E-value=51 Score=27.16 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=41.7
Q ss_pred CCccchhHHHHHHHHhhcCCceEEeeCc-cc-------CcccchHHHHHHHHhcceEEEEee-cCCcCChh
Q 036681 20 GGDTRDNFTSHLVAALHDRNVKTFIDEE-IR-------RGDEISTAISDAIEASKISVIIFS-EDYASSKW 81 (159)
Q Consensus 20 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~-------~G~~~~~~i~~ai~~S~~~I~v~S-~~~~~S~w 81 (159)
..|.|+.=+-.|.+.|.++|..|...+- .. ++-.+.+.+.+++++++.+|++.. +.|.+=+|
T Consensus 336 ~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 336 TDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp SCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred CcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 4567888888999999999998866443 21 344455567889999997655443 33544344
No 70
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=26.48 E-value=36 Score=22.09 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.6
Q ss_pred hhHHHHHHHHhhcCCceE
Q 036681 25 DNFTSHLVAALHDRNVKT 42 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v 42 (159)
..|+..|...|.++||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 479999999999999998
No 71
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=26.22 E-value=39 Score=21.55 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHHHHhccccceec
Q 036681 132 VHPENVQKWRDGLTEASLIVGLDS 155 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~~~~g~~~ 155 (159)
.+++..+.|..||..+....+-.+
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~~~~ 115 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEGDDY 115 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHHHhcccCCC
Confidence 357899999999999987665443
No 72
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=26.16 E-value=1.4e+02 Score=19.44 Aligned_cols=43 Identities=7% Similarity=0.171 Sum_probs=32.0
Q ss_pred HHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcC
Q 036681 33 AALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYAS 78 (159)
Q Consensus 33 ~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~ 78 (159)
.-++-.|+.+|.. ...+.+.+.+.+.+++-++.|++++++.+.
T Consensus 16 ~GFrLaGi~~~~v---~~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 16 QGFRLAGLEGYGA---SSAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHTTSEEEEC---SSHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHcCCeEEEe---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 4455688888753 233556667777777889999999999887
No 73
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=25.95 E-value=2e+02 Score=21.95 Aligned_cols=54 Identities=13% Similarity=-0.004 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhhcCCceEEe-eCc-cc--Ccc-----cchHHHHHHHHhcceEEEEeecCCcCC
Q 036681 25 DNFTSHLVAALHDRNVKTFI-DEE-IR--RGD-----EISTAISDAIEASKISVIIFSEDYASS 79 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v~~-d~~-~~--~G~-----~~~~~i~~ai~~S~~~I~v~S~~~~~S 79 (159)
...+..+.+.|+..|..+-+ |-. +. .++ +-..++.+.|..++ .|++.||-|..+
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD-giV~aSP~Yn~s 137 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE-GQVWCSPERHGQ 137 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS-EEEEEEEEETTE
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC-eEEEEcCccccC
Confidence 45667777778877876533 322 21 111 11346778889999 566678888765
No 74
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=25.83 E-value=65 Score=27.80 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=37.9
Q ss_pred eecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEEeecC
Q 036681 11 KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVIIFSED 75 (159)
Q Consensus 11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v~S~~ 75 (159)
.++|+|---+++ -...+..|++.|+.+|++|-+|.+ +..+...+.+|-. ... .++|+.++
T Consensus 539 P~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~---~~~~g~kir~a~~~g~p-~~ivvG~~ 599 (642)
T 1qf6_A 539 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVP-YMLVCGDK 599 (642)
T ss_dssp SSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCS-EEEEECTT
T ss_pred CceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCC-EEEEECch
Confidence 478876544433 357889999999999999999885 2233334443333 344 45555544
No 75
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=25.21 E-value=1.8e+02 Score=20.64 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCC-hhHHH
Q 036681 26 NFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASS-KWCLN 84 (159)
Q Consensus 26 ~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S-~wc~~ 84 (159)
.++..+.+.|+..|..+-.-+ +..+++ ..++.+.|..++ .|++.+|-|.-+ ++.++
T Consensus 34 ~l~~~~~~~~~~~g~~v~~~d-L~~~~d-~~~~~~~l~~AD-~iV~~~P~y~~s~pa~LK 90 (204)
T 2amj_A 34 TLTEVADGTLRDLGHDVRIVR-ADSDYD-VKAEVQNFLWAD-VVIWQMPGWWMGAPWTVK 90 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-SSSCCC-HHHHHHHHHHCS-EEEEEEECBTTBCCHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEe-CCcccc-HHHHHHHHHhCC-EEEEECCccccCCCHHHH
Confidence 455666666666686653311 333334 347788999999 556677777644 44433
No 76
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.96 E-value=48 Score=21.80 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.2
Q ss_pred CChhHHHHHHHHHHHhccccc
Q 036681 132 VHPENVQKWRDGLTEASLIVG 152 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~~~~g 152 (159)
.++++.++|..||..+...+.
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~ 117 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPA 117 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCC
Confidence 357899999999999887654
No 77
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=24.76 E-value=1.3e+02 Score=23.34 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=35.2
Q ss_pred EEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcc-cchHHHHHHHHhcceEEEEe
Q 036681 14 VFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGD-EISTAISDAIEASKISVIIF 72 (159)
Q Consensus 14 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~-~~~~~i~~ai~~S~~~I~v~ 72 (159)
|.|=|...+-.......+.+.|++.|+.+-....+.+|. ++. .+...|+.++.-++++
T Consensus 167 vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~-~~l~~i~~~~~d~v~~ 225 (419)
T 3h5l_A 167 IAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWG-PTLAKLRADPPAVIVV 225 (419)
T ss_dssp EEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCH-HHHHHHHHSCCSEEEE
T ss_pred EEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHH-HHHHHHHhcCCCEEEE
Confidence 445454433235677888888899999887655555564 444 4555666555444443
No 78
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=24.65 E-value=70 Score=27.49 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=36.9
Q ss_pred eecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEEee
Q 036681 11 KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVIIFS 73 (159)
Q Consensus 11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v~S 73 (159)
.++|+|---+.+.....+..|++.|+++|++|-+|.+ +..+...+.+|-. +... ++|+.
T Consensus 545 p~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~---~~~~g~k~~~a~~~g~p~-~iivG 604 (645)
T 1nyr_A 545 PKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDR---NEKMGYKIREAQMQKIPY-QIVVG 604 (645)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCS---SCCHHHHHHHHHHHTCSE-EEEEC
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHhcCCCE-EEEEc
Confidence 4788775433122357889999999999999999875 2334444444333 4444 44443
No 79
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=24.60 E-value=1.6e+02 Score=19.47 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=31.7
Q ss_pred Cccc-chHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEEEeeCCcccc
Q 036681 50 RGDE-ISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVC 113 (159)
Q Consensus 50 ~G~~-~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~~~v~p~~v~ 113 (159)
||.. +.......++.++.+|+|++..- ....+++...+.........-+|+++=+...|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVTN---QASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 6643 34455667889999999998653 3333444443333211111223444434455553
No 80
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=24.60 E-value=18 Score=23.33 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHhcceEEEEeecCCcCChhHHHHHHHHHHhh
Q 036681 60 DAIEASKISVIIFSEDYASSKWCLNELLKILECK 93 (159)
Q Consensus 60 ~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~ 93 (159)
.-+.+++++++|+||+=.-..||-..+..++++.
T Consensus 35 svLCda~Valiifs~~gk~~~f~s~~~~~il~rY 68 (90)
T 3p57_A 35 SVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (90)
T ss_dssp HHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred HhccCCceEEEEECCCCCEEEeCCCCHHHHHHHH
Confidence 3468899999999988544445544555555553
No 81
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=24.45 E-value=1.8e+02 Score=25.71 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=46.7
Q ss_pred HHhhcCCceEEeeCcccCcccc-hHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCce-eeeEEEeeCC
Q 036681 33 AALHDRNVKTFIDEEIRRGDEI-STAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQI-VIPVFYEVDP 109 (159)
Q Consensus 33 ~~L~~~gi~v~~d~~~~~G~~~-~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~-IiPV~~~v~p 109 (159)
..|+.+|+.|.. .|... .+++.+++.+.+.-++.+|--...+.-.+.++...++..++.+.. -+||+.+..+
T Consensus 628 ~~LE~aGFEVID-----LGvdVPpEeIVeAA~EedADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~ 701 (763)
T 3kp1_A 628 GGIEKYGVEVHY-----LGTSVPVEKLVDAAIELKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQ 701 (763)
T ss_dssp TCGGGGTCEEEE-----CCSSBCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTT
T ss_pred HHHHhCCCEEEE-----CCCCCCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 568899999853 44333 457888888889999999877776443445555444443333333 4788886443
No 82
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=24.38 E-value=3e+02 Score=23.06 Aligned_cols=52 Identities=8% Similarity=0.075 Sum_probs=34.4
Q ss_pred cCc-ccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEE
Q 036681 49 RRG-DEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVF 104 (159)
Q Consensus 49 ~~G-~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~ 104 (159)
.|| .++..+..++++.++-+|+|++..----.....=+..+. ..+..+|+++
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~----~~~lp~i~fI 159 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR----MRATPVMTFV 159 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCCEEEEE
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH----HhCCceEEEE
Confidence 488 688889999999999999999866544444433333333 3334555443
No 83
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=24.38 E-value=1e+02 Score=26.98 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=38.2
Q ss_pred eecEEEeccCCc-cchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEEeec
Q 036681 11 KYDVFINFGGGD-TRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVIIFSE 74 (159)
Q Consensus 11 ~yDVFISy~~~D-~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v~S~ 74 (159)
.++|+|---+++ .-...+..|+..|++.|++|.+|.+ +..+...+.++=. ... .++++.+
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~---~~sigkk~k~Ad~~G~p-~~IiIG~ 620 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS---SGSIGRRYARTDEIGVA-FGVTIDF 620 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC---CSCHHHHHHHHHHTTCC-EEEEECH
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCC-EEEEEcc
Confidence 478887654443 2357899999999999999999874 2233334444333 344 4444443
No 84
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=24.19 E-value=46 Score=20.62 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=14.3
Q ss_pred CChhHHHHHHHHHHHhc
Q 036681 132 VHPENVQKWRDGLTEAS 148 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~ 148 (159)
.+++..+.|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 35789999999999875
No 85
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=23.97 E-value=1.5e+02 Score=21.09 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhhcCCceEEeeCcccCc--ccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHH
Q 036681 25 DNFTSHLVAALHDRNVKTFIDEEIRRG--DEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKIL 90 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v~~d~~~~~G--~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~ 90 (159)
+.-...|...|++.|+.+..-. +.+. +.+...+.+++++++++|.-=.-.....+...+-+..++
T Consensus 22 DtN~~~l~~~L~~~G~~v~~~~-iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~T~ea~a~~~ 88 (172)
T 3kbq_A 22 NTNAAFIGNFLTYHGYQVRRGF-VVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVEGFAKCI 88 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCCHHHHHHHHH
T ss_pred eHHHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccchHHHHHHHc
Confidence 3556778899999999875422 2222 234556666666766544332222333334443333333
No 86
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=23.75 E-value=1.9e+02 Score=23.98 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=36.2
Q ss_pred HHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHH
Q 036681 28 TSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLN 84 (159)
Q Consensus 28 v~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~ 84 (159)
..+|.+.|++.|+++.+ ..|.+..+.|.+-+++..+.-|+++..|.--.+-++
T Consensus 67 L~~L~~~L~~~G~~L~v----~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd 119 (509)
T 1u3d_A 67 LAQLDSSLRSLGTCLIT----KRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRD 119 (509)
T ss_dssp HHHHHHHHHHTTCCEEE----EECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEE----EeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHH
Confidence 35677788889998875 223344557777788888888888887754333333
No 87
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.64 E-value=1.8e+02 Score=19.74 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCC
Q 036681 25 DNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASS 79 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S 79 (159)
+..+..|.+.|+..|+.+-+ +...+.-...+...+.+++ .|++-||.|...
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~---~~~~~~~~~~~~~~~~~~d-~ii~Gspty~g~ 65 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEM---VDLRAVDPQELIEAVSSAR-GIVLGTPPSQPS 65 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEE---EETTTCCHHHHHHHHHHCS-EEEEECCBSSCC
T ss_pred HHHHHHHHHHHHhCCCeEEE---EECCCCCHHHHHHHHHhCC-EEEEEcCCcCCc
Confidence 68999999999989986532 1222222345556667777 567778888643
No 88
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=23.42 E-value=98 Score=24.76 Aligned_cols=50 Identities=14% Similarity=0.307 Sum_probs=29.3
Q ss_pred CccchhHHHHHHHHhhcCCceEEeeCc-ccCccc-----chHHHHHHHHhcceEEE
Q 036681 21 GDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDE-----ISTAISDAIEASKISVI 70 (159)
Q Consensus 21 ~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~-----~~~~i~~ai~~S~~~I~ 70 (159)
.|.|+.=+-.|.+.|.++|..|...+- +..... +...+.+++++++++|+
T Consensus 324 ~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 324 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 466777777788888888877755443 332211 12235556666665554
No 89
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=23.38 E-value=52 Score=15.26 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHh
Q 036681 135 ENVQKWRDGLTEA 147 (159)
Q Consensus 135 ~~~~~W~~al~~v 147 (159)
|-+|+|.+-|.-.
T Consensus 8 DSV~rWmeDLr~M 20 (22)
T 3ro3_B 8 DSVQRWMEDLKLM 20 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 6799999887643
No 90
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=23.32 E-value=1.6e+02 Score=21.44 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=24.8
Q ss_pred ecEEEeccCCccc--hhHHHHHHHHhhcCCceEEe
Q 036681 12 YDVFINFGGGDTR--DNFTSHLVAALHDRNVKTFI 44 (159)
Q Consensus 12 yDVFISy~~~D~~--~~fv~~L~~~L~~~gi~v~~ 44 (159)
.-||+.|-..|.- ......+++.|++.|+.+-+
T Consensus 184 ~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~ 218 (246)
T 4f21_A 184 LPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEY 218 (246)
T ss_dssp CCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEE
T ss_pred CchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 3489999888852 45677888899988887743
No 91
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=23.27 E-value=96 Score=25.34 Aligned_cols=51 Identities=8% Similarity=0.076 Sum_probs=30.3
Q ss_pred EEEeccCCccchhHHHHHHHHhhcCCceEEeeCcc--cCcccchHHHHHHHHh
Q 036681 14 VFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEI--RRGDEISTAISDAIEA 64 (159)
Q Consensus 14 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~--~~G~~~~~~i~~ai~~ 64 (159)
|.|=|+..|-.+.++..+.++++++|+.+-....+ .+++.-...+...|+.
T Consensus 200 V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~ 252 (496)
T 3ks9_A 200 VSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRE 252 (496)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 44445544444678888888898899887655543 2343322344555664
No 92
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=23.06 E-value=1.1e+02 Score=23.00 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=37.2
Q ss_pred HHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccC
Q 036681 31 LVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKG 97 (159)
Q Consensus 31 L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~ 97 (159)
|...+...|.-=++|-++..++....++.+..+...+-| |+|-|-.+..+-.+|+...+.++...+
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 334444455444667665555555556665555555444 455554455566678877777665444
No 93
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=22.93 E-value=2.1e+02 Score=20.33 Aligned_cols=74 Identities=9% Similarity=0.129 Sum_probs=42.7
Q ss_pred HHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccC-ceeeeEEEee
Q 036681 29 SHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKG-QIVIPVFYEV 107 (159)
Q Consensus 29 ~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~-~~IiPV~~~v 107 (159)
.-+...|+.+|+.|.. +....+ .+++.++++..+.-++.+|-....+ ...+...++..++.+ ..=+||+.+.
T Consensus 106 ~~va~~l~~~G~~v~~---LG~~vp-~~~l~~~~~~~~~d~v~lS~~~~~~---~~~~~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 106 NLVAMMLESGGFTVYN---LGVDIE-PGKFVEAVKKYQPDIVGMSALLTTT---MMNMKSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHHHHHTTCEEEE---CCSSBC-HHHHHHHHHHHCCSEEEEECCSGGG---THHHHHHHHHHHHTTCGGGCEEEEES
T ss_pred HHHHHHHHHCCCEEEE---CCCCCC-HHHHHHHHHHcCCCEEEEecccccc---HHHHHHHHHHHHhcCCCCCCeEEEEC
Confidence 4455667899999964 222222 3577788887777777777654433 334444443332222 1237888875
Q ss_pred CC
Q 036681 108 DP 109 (159)
Q Consensus 108 ~p 109 (159)
.+
T Consensus 179 ~~ 180 (210)
T 1y80_A 179 AP 180 (210)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 94
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=22.78 E-value=56 Score=26.90 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=29.8
Q ss_pred eecEEEeccCC-----ccchhHHHHHHHHhhcCCceEEeeC-c-ccCccc
Q 036681 11 KYDVFINFGGG-----DTRDNFTSHLVAALHDRNVKTFIDE-E-IRRGDE 53 (159)
Q Consensus 11 ~yDVFISy~~~-----D~~~~fv~~L~~~L~~~gi~v~~d~-~-~~~G~~ 53 (159)
.++|+|-.-+. +.....+..|++.|+.+|++|-+|. + -.+|..
T Consensus 338 p~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~~g~k 387 (471)
T 3a32_A 338 PIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSD 387 (471)
T ss_dssp SCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTHHHH
T ss_pred CceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHH
Confidence 47777665431 2235678999999999999999987 4 334443
No 95
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=22.61 E-value=1.4e+02 Score=24.83 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=37.7
Q ss_pred eecEEEeccCC-c-cchhHHHHHHHHhhcCC-ceEEeeCcccCcccchHHHHHHHH-hcceEEEEee
Q 036681 11 KYDVFINFGGG-D-TRDNFTSHLVAALHDRN-VKTFIDEEIRRGDEISTAISDAIE-ASKISVIIFS 73 (159)
Q Consensus 11 ~yDVFISy~~~-D-~~~~fv~~L~~~L~~~g-i~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v~S 73 (159)
.++|+|---++ + .-...+..|+..|+..| ++|-+|.. ..+...+.+|=. .... ++++.
T Consensus 398 P~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~----~sig~k~~~ad~~g~p~-~iivG 459 (505)
T 1ati_A 398 PIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT----GNIGKAYRRHDEVGTPF-AVTVD 459 (505)
T ss_dssp SCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC----SCHHHHHHHHHHTTCSE-EEEEC
T ss_pred CceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC----CCHHHHHHHHHHCCCCE-EEEEC
Confidence 48898775444 1 22578899999999999 99998874 244445554444 3444 44443
No 96
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.56 E-value=51 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHHhcc
Q 036681 133 HPENVQKWRDGLTEASL 149 (159)
Q Consensus 133 ~~~~~~~W~~al~~v~~ 149 (159)
+++..++|.+||..++.
T Consensus 90 s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 90 SAELQQQWLETLSTAAH 106 (112)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 48999999999998764
No 97
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=22.38 E-value=1.2e+02 Score=22.33 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=45.7
Q ss_pred cCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEE
Q 036681 37 DRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVF 104 (159)
Q Consensus 37 ~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~ 104 (159)
...+.||+..+ -.....+...|..+++...+.+++-..+......-..+|..+++..+ ..|.||
T Consensus 33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sr----i~IvV~ 97 (204)
T 3ozi_A 33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSK----IYVPII 97 (204)
T ss_dssp -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCS----EEEEEE
T ss_pred CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCc----EeeEEE
Confidence 35688998665 33334577889999999888877776777766666668888886543 777777
No 98
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=22.30 E-value=60 Score=27.06 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=37.7
Q ss_pred CCccchhHHHHHHHHhhcCCceEEeeCc-c--cCcccchHHHHHHHHhcceEEEEe
Q 036681 20 GGDTRDNFTSHLVAALHDRNVKTFIDEE-I--RRGDEISTAISDAIEASKISVIIF 72 (159)
Q Consensus 20 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~--~~G~~~~~~i~~ai~~S~~~I~v~ 72 (159)
..|.|+.=+-.|.+.|.++|..|...+- . .++-.+...+.+++++++.+|++.
T Consensus 367 tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t 422 (478)
T 3g79_A 367 SDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLA 422 (478)
T ss_dssp CSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECS
T ss_pred CcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEec
Confidence 4577888888999999999998866543 2 133334456788999999755544
No 99
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=22.22 E-value=1.7e+02 Score=22.37 Aligned_cols=53 Identities=8% Similarity=0.000 Sum_probs=34.0
Q ss_pred cEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcc-cchHHHHHHHHhcc
Q 036681 13 DVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGD-EISTAISDAIEASK 66 (159)
Q Consensus 13 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~-~~~~~i~~ai~~S~ 66 (159)
.|.|-|...+-....+..+...|++.|+.+-......+|. ++. .+...|+.+.
T Consensus 143 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~-~~l~~i~~~~ 196 (374)
T 3n0x_A 143 TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFT-AVGQRLFDAL 196 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCCCCH-HHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCccHH-HHHHHHHhcC
Confidence 4666565444335677888899999999886554455564 444 4556666554
No 100
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=22.13 E-value=1.9e+02 Score=19.57 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=32.3
Q ss_pred Cccc-chHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEEEeeCCccccc
Q 036681 50 RGDE-ISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCY 114 (159)
Q Consensus 50 ~G~~-~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~~~v~p~~v~~ 114 (159)
||.. +.......++.++.+|+|++..-..| .+++...+.........-+|+++=+...|+..
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDS---FYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 5643 34455677889999999998654333 33333333322111111245544445666543
No 101
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=22.07 E-value=2.5e+02 Score=20.86 Aligned_cols=54 Identities=7% Similarity=-0.005 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhhcCCceEEe-eCc-cc--Ccc----cchHHHHHHHHhcceEEEEeecCCcCC
Q 036681 25 DNFTSHLVAALHDRNVKTFI-DEE-IR--RGD----EISTAISDAIEASKISVIIFSEDYASS 79 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v~~-d~~-~~--~G~----~~~~~i~~ai~~S~~~I~v~S~~~~~S 79 (159)
...+..+.+.|+..|+.+-+ |-. +. ..+ +-..++.+.|..++ .|++.||-|..+
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD-~iI~~sP~Yn~s 112 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE-GQVWVSPERHGA 112 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS-EEEEEEECSSSS
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC-EEEEEeCCCCCC
Confidence 45677777888878876633 222 21 111 11346788899999 566778998765
No 102
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.88 E-value=62 Score=20.78 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=15.9
Q ss_pred CChhHHHHHHHHHHHhccc
Q 036681 132 VHPENVQKWRDGLTEASLI 150 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~~~ 150 (159)
.++++.++|..||..+..-
T Consensus 107 ~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 107 SSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SSHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578999999999998753
No 103
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.20 E-value=62 Score=20.25 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=16.3
Q ss_pred CChhHHHHHHHHHHHhcccc
Q 036681 132 VHPENVQKWRDGLTEASLIV 151 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~~~~ 151 (159)
.+++..+.|..||..+....
T Consensus 92 ~s~~e~~~Wi~al~~~~~~~ 111 (117)
T 2d9y_A 92 ESPEEQEAWIQAMGEAARVQ 111 (117)
T ss_dssp SSHHHHHHHHHHHHHTTCCT
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 35789999999999987643
No 104
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=21.06 E-value=1.1e+02 Score=23.98 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=31.2
Q ss_pred EEEeccCCccchh---HHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHH-hcceEEEE
Q 036681 14 VFINFGGGDTRDN---FTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIE-ASKISVII 71 (159)
Q Consensus 14 VFISy~~~D~~~~---fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~-~S~~~I~v 71 (159)
|.|=|...+-... ++..|.+.|+++|+.+-....+..++.-...+.+.|+ .++++|+.
T Consensus 157 v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~vii~~ 218 (441)
T 1jdp_A 157 AALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMC 218 (441)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCcccCHHHHHHHhhcCCcEEEEe
Confidence 4454544433345 7788888888888876443223333222334455554 44444443
No 105
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=20.94 E-value=86 Score=20.32 Aligned_cols=44 Identities=16% Similarity=0.390 Sum_probs=30.2
Q ss_pred HHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcC
Q 036681 33 AALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYAS 78 (159)
Q Consensus 33 ~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~ 78 (159)
.-++-.|+..+... ..-+.+.+.+.+.+++-++.|++++.+.+.
T Consensus 22 ~GFrLaGi~~~~~~--~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 22 IGFMLAGISDIYEV--TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHTTCCCEEEC--CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHcCCCcccCC--CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34455777766511 122455667777777889999999999876
No 106
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=20.90 E-value=1.7e+02 Score=20.58 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=25.2
Q ss_pred ecEEEeccCCccc--hhHHHHHHHHhhcCCceEEe
Q 036681 12 YDVFINFGGGDTR--DNFTSHLVAALHDRNVKTFI 44 (159)
Q Consensus 12 yDVFISy~~~D~~--~~fv~~L~~~L~~~gi~v~~ 44 (159)
.-||+.|-..|.. ......+++.|++.|..+-+
T Consensus 152 ~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~ 186 (210)
T 4h0c_A 152 TPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQ 186 (210)
T ss_dssp CEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 3489999888853 45667888999999987743
No 107
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=20.72 E-value=2.1e+02 Score=19.64 Aligned_cols=52 Identities=8% Similarity=-0.057 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhhcCCceEEe-eCc-ccCc-------------ccchHHHHHHHHhcceEEEEeecCCcCC
Q 036681 25 DNFTSHLVAALHDRNVKTFI-DEE-IRRG-------------DEISTAISDAIEASKISVIIFSEDYASS 79 (159)
Q Consensus 25 ~~fv~~L~~~L~~~gi~v~~-d~~-~~~G-------------~~~~~~i~~ai~~S~~~I~v~S~~~~~S 79 (159)
+..+..+.+.|+..|..+-+ +-. ..++ ..+. . .+.|.+++ .|++-||-|..+
T Consensus 18 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~-~-~~~l~~aD-~ii~gsP~y~~~ 84 (199)
T 2zki_A 18 VELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEV-T-LDDMRWAD-GFAIGSPTRYGN 84 (199)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBC-C-HHHHHHCS-EEEEEEECBTTB
T ss_pred HHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccc-c-HHHHHhCC-EEEEECCccccC
Confidence 57888888888877876522 222 2111 0111 2 56778888 556778988754
No 108
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=20.67 E-value=1.8e+02 Score=18.74 Aligned_cols=61 Identities=7% Similarity=0.127 Sum_probs=31.8
Q ss_pred Cccc-chHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEEEeeCCcccc
Q 036681 50 RGDE-ISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVC 113 (159)
Q Consensus 50 ~G~~-~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~~~v~p~~v~ 113 (159)
||.. +.......+..++.+|+|++..-.. ...++...+.........-+||++=....|+.
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEE---SFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp CCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHhhhhhHHhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 6643 3444567788999999999865432 33344333332211111234555433555554
No 109
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=20.63 E-value=1.6e+02 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=24.8
Q ss_pred EEEeccCCccchhHHHHHHHHhhcCCceEEeeCccc
Q 036681 14 VFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIR 49 (159)
Q Consensus 14 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~ 49 (159)
|.|=|...|-...++..|.+.|++.|+.+-....+.
T Consensus 189 V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~ 224 (555)
T 2e4u_A 189 VSTVASEGDYGETGIEAFEQEARLRNICIATAEKVG 224 (555)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred EEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeC
Confidence 444455555456788899999999999876544443
No 110
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=20.62 E-value=3e+02 Score=22.53 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHH-HHHHHH
Q 036681 28 TSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLN-ELLKIL 90 (159)
Q Consensus 28 v~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~-El~~~~ 90 (159)
..+|.+.|++.|+.+.+ ..|+. .+.|.+-+++..+.-|+....|..-..-.+ ++..++
T Consensus 67 L~~L~~~L~~~G~~L~v----~~g~~-~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l 125 (489)
T 1np7_A 67 VQNLAESLQKVGNKLLV----TTGLP-EQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQL 125 (489)
T ss_dssp HHHHHHHHHHTTCCEEE----EESCH-HHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEE----EECCH-HHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHH
Confidence 36677888899999876 33543 457778888889999999988875444333 333433
No 111
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=20.58 E-value=82 Score=22.03 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhcCCceEEeeCcccCc-ccchHHHHHHHH-hcceEE
Q 036681 26 NFTSHLVAALHDRNVKTFIDEEIRRG-DEISTAISDAIE-ASKISV 69 (159)
Q Consensus 26 ~fv~~L~~~L~~~gi~v~~d~~~~~G-~~~~~~i~~ai~-~S~~~I 69 (159)
.-...|...|++.|+.+..-. +.+. +.+...+.++++ +++++|
T Consensus 27 sn~~~l~~~l~~~G~~v~~~~-iv~Dd~~i~~al~~a~~~~~DlVi 71 (164)
T 3pzy_A 27 RCGPIITEWLAQQGFSSAQPE-VVADGSPVGEALRKAIDDDVDVIL 71 (164)
T ss_dssp CHHHHHHHHHHHTTCEECCCE-EECSSHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEE-EeCCHHHHHHHHHHHHhCCCCEEE
Confidence 455678888999998764322 2222 344455666664 555443
No 112
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=20.44 E-value=62 Score=20.70 Aligned_cols=18 Identities=17% Similarity=0.551 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHHhccc
Q 036681 133 HPENVQKWRDGLTEASLI 150 (159)
Q Consensus 133 ~~~~~~~W~~al~~v~~~ 150 (159)
++++.++|..||.+++..
T Consensus 103 s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 103 TGKEMELWMKAMLDAALV 120 (128)
T ss_dssp SHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 578999999999988764
No 113
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=20.34 E-value=61 Score=20.28 Aligned_cols=17 Identities=12% Similarity=0.390 Sum_probs=14.2
Q ss_pred CChhHHHHHHHHHHHhc
Q 036681 132 VHPENVQKWRDGLTEAS 148 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~ 148 (159)
.++++.++|..||.++.
T Consensus 94 ~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 94 ESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 35789999999998874
No 114
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.17 E-value=63 Score=21.58 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=16.8
Q ss_pred CChhHHHHHHHHHHHhccccc
Q 036681 132 VHPENVQKWRDGLTEASLIVG 152 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~~~~g 152 (159)
.+++..++|..||..+.....
T Consensus 107 ~s~~e~~~Wi~ai~~a~~~~~ 127 (130)
T 1v88_A 107 TSESDGRCWMDALELALKSGP 127 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHHhcCC
Confidence 357899999999999876543
No 115
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=20.07 E-value=2.3e+02 Score=20.48 Aligned_cols=71 Identities=7% Similarity=0.124 Sum_probs=42.0
Q ss_pred HHHHhhcCCceEEeeCcccCcccc-hHHHHHHHHhcceEEEEe--ecCCcCChhHHHHHHHHHHhhcccCc-eeeeEEEe
Q 036681 31 LVAALHDRNVKTFIDEEIRRGDEI-STAISDAIEASKISVIIF--SEDYASSKWCLNELLKILECKGKKGQ-IVIPVFYE 106 (159)
Q Consensus 31 L~~~L~~~gi~v~~d~~~~~G~~~-~~~i~~ai~~S~~~I~v~--S~~~~~S~wc~~El~~~~~~~~~~~~-~IiPV~~~ 106 (159)
+...|+.+|+.|.. -|.+. .+++.+++.+.+.-++.+ |--... .+.++...++..++.+. .=+||+.+
T Consensus 112 v~~~l~~~G~~Vi~-----LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~---~~~~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 112 VTTMLGANGFQIVD-----LGVDVLNENVVEEAAKHKGEKVLLVGSALMTT---SMLGQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHHTSCEEEE-----CCSSCCHHHHHHHHHHTTTSCEEEEEECSSHH---HHTHHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHHCCCeEEE-----cCCCCCHHHHHHHHHHcCCCEEEEEchhcccC---cHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 44556899999853 34333 347778888877777777 654443 33344444444332222 24788887
Q ss_pred eCC
Q 036681 107 VDP 109 (159)
Q Consensus 107 v~p 109 (159)
..+
T Consensus 184 G~~ 186 (215)
T 3ezx_A 184 GAP 186 (215)
T ss_dssp SSS
T ss_pred CCC
Confidence 544
No 116
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=20.04 E-value=60 Score=20.24 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHHHHhcc
Q 036681 132 VHPENVQKWRDGLTEASL 149 (159)
Q Consensus 132 ~~~~~~~~W~~al~~v~~ 149 (159)
.+++..++|..||..++.
T Consensus 86 ~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 86 DDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 357899999999998764
Done!