BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036682
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MCM|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCM|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
Length = 442
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 5 LECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQL---EQQLDTALKHIRSRKNQLMQE 61
+ECNN++ K L+ K + Y+ + +L + D Q E +D +I +K L++
Sbjct: 299 VECNNIEQKAQLIAKYNKKYV--IIHNLGITDRNQYLDKENAIDNVCDYIEQKKQILLKH 356
Query: 62 SISE 65
I++
Sbjct: 357 GIAQ 360
>pdb|3M9B|A Chain A, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|B Chain B, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|C Chain C, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|D Chain D, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|E Chain E, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|F Chain F, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|G Chain G, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|H Chain H, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|I Chain I, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|J Chain J, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|K Chain K, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9B|L Chain L, Crystal Structure Of The Amino Terminal Coiled Coil
Domain And The Inter Domain Of The Mycobacterium
Tuberculosis Proteasomal Atpase Mpa
pdb|3M9D|A Chain A, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|B Chain B, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|C Chain C, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|D Chain D, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|E Chain E, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|F Chain F, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|J Chain J, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|K Chain K, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|L Chain L, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|M Chain M, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|N Chain N, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
pdb|3M9D|O Chain O, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled
Coil Domain And The Inter Domain
Length = 251
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 6 ECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISE 65
E L+ + +L++ + +G + S +DI QLE ++D+ + +R ++LM E++ E
Sbjct: 25 ELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDS----LAARNSKLM-ETLKE 79
Query: 66 LQKK 69
+++
Sbjct: 80 ARQQ 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,616,523
Number of Sequences: 62578
Number of extensions: 44610
Number of successful extensions: 120
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 16
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)