Query 036682
Match_columns 69
No_of_seqs 125 out of 1076
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:27:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 1.2E-22 2.6E-27 121.4 7.6 68 2-69 16-83 (100)
2 KOG0014 MADS box transcription 95.7 0.0031 6.8E-08 40.5 0.3 61 3-63 112-176 (195)
3 PF06698 DUF1192: Protein of u 93.4 0.18 3.8E-06 27.8 3.6 32 23-54 12-43 (59)
4 PF07106 TBPIP: Tat binding pr 90.3 3.2 6.9E-05 26.3 7.7 52 4-56 115-166 (169)
5 PRK15422 septal ring assembly 81.1 7 0.00015 22.7 4.8 31 32-67 1-31 (79)
6 COG3074 Uncharacterized protei 77.8 11 0.00023 21.7 4.8 32 32-68 1-32 (79)
7 PF06005 DUF904: Protein of un 76.5 9 0.00019 21.6 4.3 26 32-57 1-26 (72)
8 PF13758 Prefoldin_3: Prefoldi 68.4 7.5 0.00016 23.4 2.9 16 2-17 9-24 (99)
9 PF15243 ANAPC15: Anaphase-pro 63.2 13 0.00027 22.1 3.1 20 35-54 28-47 (92)
10 PF10504 DUF2452: Protein of u 62.1 41 0.00089 21.9 5.7 36 33-68 28-66 (159)
11 PF12252 SidE: Dot/Icm substra 57.3 1.2E+02 0.0027 25.8 8.5 47 5-52 1131-1177(1439)
12 PF06937 EURL: EURL protein; 53.4 22 0.00048 25.2 3.4 44 17-60 204-247 (285)
13 PF12537 DUF3735: Protein of u 52.9 38 0.00083 18.7 3.8 25 34-58 47-71 (72)
14 cd08888 SRPBCC_PITPNA-B_like L 52.5 70 0.0015 22.4 5.7 40 13-52 216-257 (258)
15 TIGR00012 L29 ribosomal protei 50.3 37 0.00081 17.8 3.6 28 28-55 1-28 (55)
16 PF10224 DUF2205: Predicted co 49.3 35 0.00075 19.7 3.3 23 4-26 43-65 (80)
17 PF02151 UVR: UvrB/uvrC motif; 49.0 31 0.00067 16.5 3.7 33 36-68 3-35 (36)
18 PF02183 HALZ: Homeobox associ 48.7 37 0.00081 17.3 3.2 21 4-24 18-38 (45)
19 PF09006 Surfac_D-trimer: Lung 47.7 36 0.00078 17.8 2.9 17 8-24 2-18 (46)
20 PF14775 NYD-SP28_assoc: Sperm 44.9 46 0.00099 18.0 3.2 21 4-24 39-59 (60)
21 COG2433 Uncharacterized conser 44.6 1.6E+02 0.0034 23.4 7.8 34 35-68 450-488 (652)
22 PF11629 Mst1_SARAH: C termina 40.5 58 0.0013 17.2 4.5 35 29-63 5-46 (49)
23 PF04508 Pox_A_type_inc: Viral 40.2 39 0.00084 15.1 2.5 16 6-21 2-17 (23)
24 PF00831 Ribosomal_L29: Riboso 39.8 28 0.00062 18.4 1.9 28 28-55 3-30 (58)
25 PF03250 Tropomodulin: Tropomo 39.4 21 0.00045 23.0 1.5 17 29-45 21-37 (147)
26 PHA02109 hypothetical protein 39.3 94 0.002 21.0 4.6 42 16-57 172-215 (233)
27 PF05557 MAD: Mitotic checkpoi 39.1 1.8E+02 0.004 22.6 7.4 51 5-55 566-626 (722)
28 PF10473 CENP-F_leu_zip: Leuci 37.0 71 0.0015 20.2 3.6 22 5-26 52-73 (140)
29 KOG2417 Predicted G-protein co 36.7 1.2E+02 0.0026 22.7 5.1 33 32-64 183-215 (462)
30 PF11460 DUF3007: Protein of u 36.5 22 0.00047 21.6 1.2 19 27-45 85-103 (104)
31 PRK00306 50S ribosomal protein 36.4 74 0.0016 17.2 3.3 29 27-55 4-32 (66)
32 PF06156 DUF972: Protein of un 34.6 1.1E+02 0.0023 18.5 5.6 33 34-66 7-41 (107)
33 PRK09039 hypothetical protein; 33.4 1.8E+02 0.0039 20.7 6.3 15 6-20 138-152 (343)
34 PF15206 FAM209: FAM209 family 33.1 60 0.0013 20.9 2.8 28 31-58 91-118 (150)
35 PRK13169 DNA replication intia 30.9 1.3E+02 0.0028 18.3 5.7 33 34-66 7-41 (110)
36 PTZ00108 DNA topoisomerase 2-l 30.9 1.7E+02 0.0036 25.3 5.6 46 5-50 1102-1147(1388)
37 PF14723 SSFA2_C: Sperm-specif 30.7 67 0.0015 21.3 2.8 19 35-53 159-177 (179)
38 PLN03128 DNA topoisomerase 2; 30.5 55 0.0012 27.3 2.9 40 5-44 1095-1134(1135)
39 KOG3156 Uncharacterized membra 30.2 69 0.0015 21.9 2.9 21 3-23 121-141 (220)
40 PHA03162 hypothetical protein; 29.0 1.6E+02 0.0034 18.7 7.9 54 3-56 18-75 (135)
41 PF05812 Herpes_BLRF2: Herpesv 27.7 1.6E+02 0.0034 18.3 7.8 54 3-56 8-65 (118)
42 PF06721 DUF1204: Protein of u 27.6 2E+02 0.0044 19.5 5.4 56 4-60 14-75 (228)
43 COG5415 Predicted integral mem 27.5 1.6E+02 0.0035 20.4 4.3 26 35-60 15-43 (251)
44 TIGR01837 PHA_granule_1 poly(h 27.5 1.3E+02 0.0027 18.2 3.5 21 5-25 96-116 (118)
45 PHA03155 hypothetical protein; 27.2 1.6E+02 0.0035 18.2 7.7 54 3-56 13-66 (115)
46 TIGR00444 mazG MazG family pro 26.8 1.4E+02 0.0031 20.5 4.0 31 10-40 207-243 (248)
47 cd00427 Ribosomal_L29_HIP Ribo 26.8 1.1E+02 0.0023 16.1 3.1 27 28-54 2-28 (57)
48 PHA02592 52 DNA topisomerase I 26.5 66 0.0014 24.0 2.5 22 30-51 397-418 (439)
49 PF10312 Cactin_mid: Conserved 25.6 85 0.0018 20.7 2.7 20 29-48 140-159 (191)
50 COG3433 Aryl carrier domain [S 25.3 73 0.0016 18.2 2.0 33 18-55 4-36 (74)
51 PRK14549 50S ribosomal protein 25.2 1.2E+02 0.0026 16.7 2.9 27 27-53 7-33 (69)
52 COG4496 Uncharacterized protei 24.7 98 0.0021 18.6 2.5 18 31-48 34-51 (100)
53 PF10243 MIP-T3: Microtubule-b 24.7 25 0.00053 26.4 0.0 59 3-62 461-529 (539)
54 PF04282 DUF438: Family of unk 24.6 73 0.0016 17.9 1.9 24 23-46 20-43 (71)
55 PLN03237 DNA topoisomerase 2; 24.5 1.3E+02 0.0029 26.0 4.1 45 5-49 1126-1170(1465)
56 cd08889 SRPBCC_PITPNM1-2_like 24.4 1.1E+02 0.0024 21.5 3.1 36 15-50 220-257 (260)
57 PF15358 TSKS: Testis-specific 23.7 87 0.0019 23.8 2.7 40 10-50 193-236 (558)
58 PF14357 DUF4404: Domain of un 23.7 1.5E+02 0.0033 16.9 3.2 39 10-50 2-40 (85)
59 PRK01371 sec-independent trans 23.4 1.4E+02 0.0029 19.0 3.2 31 7-37 36-66 (137)
60 PF07407 Seadorna_VP6: Seadorn 23.4 2.7E+02 0.0059 20.6 5.0 27 3-29 37-63 (420)
61 PRK00461 rpmC 50S ribosomal pr 23.0 1.6E+02 0.0034 17.2 3.2 27 28-54 4-30 (87)
62 PF15335 CAAP1: Caspase activi 21.2 60 0.0013 18.0 1.1 23 18-40 25-47 (64)
63 PF07498 Rho_N: Rho terminatio 21.0 27 0.00059 17.4 -0.3 33 28-61 1-33 (43)
64 PRK10265 chaperone-modulator p 20.4 1.8E+02 0.0039 16.9 3.2 20 6-25 79-98 (101)
65 PF14237 DUF4339: Domain of un 20.3 77 0.0017 15.6 1.4 16 25-40 7-22 (45)
66 KOG3048 Molecular chaperone Pr 20.3 2E+02 0.0044 18.6 3.5 24 26-49 7-30 (153)
67 cd04788 HTH_NolA-AlbR Helix-Tu 20.2 1.9E+02 0.004 16.5 4.3 37 31-67 57-93 (96)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.88 E-value=1.2e-22 Score=121.37 Aligned_cols=68 Identities=57% Similarity=0.794 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036682 2 NWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQKK 69 (69)
Q Consensus 2 ~~~~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~i~~l~~k 69 (69)
+|+.++++|+.+++.|+..+|+++|+||++||++||..||++|+.|+.+||++|+++|.++|..+++|
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~k 83 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKK 83 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=95.74 E-value=0.0031 Score=40.46 Aligned_cols=61 Identities=34% Similarity=0.427 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHH---HHhhhhcCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 3 WPLECNNLKAKIDLLQK---NQRHYLGEDLESLSL-KDIQQLEQQLDTALKHIRSRKNQLMQESI 63 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~---~~r~~~GedL~~Ls~-~eL~~LE~~Le~~l~~VR~rK~~ll~~~i 63 (69)
|......+....+.+.. ..++++|+++.++++ .+|..++.+++.++..+|..+...+..++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (195)
T KOG0014|consen 112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSN 176 (195)
T ss_pred hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchh
Confidence 34455566666776664 499999999999999 99999999999999999998877766554
No 3
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=93.41 E-value=0.18 Score=27.76 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=25.2
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036682 23 HYLGEDLESLSLKDIQQLEQQLDTALKHIRSR 54 (69)
Q Consensus 23 ~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~r 54 (69)
+..|+||+.||++||..==..|+.=+.+++..
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999988666666666666553
No 4
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.35 E-value=3.2 Score=26.32 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 4 PLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKN 56 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~ 56 (69)
...+..+..++..++..+..+.+ +-...|.+|...++.....+....+.||-
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999998887 66669999999999999999999998874
No 5
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.10 E-value=7 Score=22.67 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 32 LSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQ 67 (69)
Q Consensus 32 Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~i~~l~ 67 (69)
+||+=|.+||..+..|+.-|- ++..+|+.|+
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELK 31 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELK 31 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 578889999999999999874 4444555554
No 6
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.76 E-value=11 Score=21.66 Aligned_cols=32 Identities=34% Similarity=0.570 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036682 32 LSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQK 68 (69)
Q Consensus 32 Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~i~~l~~ 68 (69)
+|++=+..||..+..|+.-| .++.-+|+.|+.
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKE 32 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKE 32 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 57788899999999998876 455566666654
No 7
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.52 E-value=9 Score=21.59 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 32 LSLKDIQQLEQQLDTALKHIRSRKNQ 57 (69)
Q Consensus 32 Ls~~eL~~LE~~Le~~l~~VR~rK~~ 57 (69)
+|++-|.+||..+..|+..|..=+.+
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq~e 26 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQME 26 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998765544
No 8
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=68.43 E-value=7.5 Score=23.42 Aligned_cols=16 Identities=38% Similarity=0.736 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHHH
Q 036682 2 NWPLECNNLKAKIDLL 17 (69)
Q Consensus 2 ~~~~e~~~l~~~~e~L 17 (69)
.|..||+.|+.+++.+
T Consensus 9 ~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 9 TWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4889999999999988
No 9
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=63.17 E-value=13 Score=22.12 Aligned_cols=20 Identities=35% Similarity=0.435 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036682 35 KDIQQLEQQLDTALKHIRSR 54 (69)
Q Consensus 35 ~eL~~LE~~Le~~l~~VR~r 54 (69)
.+|.++|++-+.+|..|+.+
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ek 47 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEK 47 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999875
No 10
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=62.09 E-value=41 Score=21.89 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 036682 33 SLKDIQQLEQQLDTALKHIRSR---KNQLMQESISELQK 68 (69)
Q Consensus 33 s~~eL~~LE~~Le~~l~~VR~r---K~~ll~~~i~~l~~ 68 (69)
+..||..|=++++.|..-||.+ |-.++.+||..|+.
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~ 66 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQE 66 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6789999999999999999976 77889999998875
No 11
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=57.25 E-value=1.2e+02 Score=25.81 Aligned_cols=47 Identities=23% Similarity=0.414 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 036682 5 LECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIR 52 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR 52 (69)
+.+..|++++..|+...-+|. .+=+...|.|+..||++|+..-.++=
T Consensus 1131 a~lnnlqqElklLRnEK~Rmh-~~~dkVDFSDIEkLE~qLq~~~~kL~ 1177 (1439)
T PF12252_consen 1131 ANLNNLQQELKLLRNEKIRMH-SGTDKVDFSDIEKLEKQLQVIHTKLY 1177 (1439)
T ss_pred HHHHHHHHHHHHHHhHHHhhc-cCCCcccHHHHHHHHHHHHHhhhhhH
Confidence 355678888888888766654 35566999999999999998766543
No 12
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=53.38 E-value=22 Score=25.15 Aligned_cols=44 Identities=30% Similarity=0.527 Sum_probs=35.8
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 17 LQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQ 60 (69)
Q Consensus 17 L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~ 60 (69)
++...++..=|+|.+|+++||.+|=..|...+..|-+-=++.+.
T Consensus 204 ~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQ 247 (285)
T PF06937_consen 204 LQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQ 247 (285)
T ss_pred ccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777889999999999999999999998888776555544
No 13
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=52.86 E-value=38 Score=18.70 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 34 LKDIQQLEQQLDTALKHIRSRKNQL 58 (69)
Q Consensus 34 ~~eL~~LE~~Le~~l~~VR~rK~~l 58 (69)
-.|+..+|+.+..+..-+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999998764
No 14
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=52.49 E-value=70 Score=22.38 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhhc--CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 036682 13 KIDLLQKNQRHYLG--EDLESLSLKDIQQLEQQLDTALKHIR 52 (69)
Q Consensus 13 ~~e~L~~~~r~~~G--edL~~Ls~~eL~~LE~~Le~~l~~VR 52 (69)
.-..+-..+|++.. ++--+||++++..+|.+....|.++|
T Consensus 216 ~r~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 216 ERRLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 34456667777765 46678999999999999999999987
No 15
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=50.27 E-value=37 Score=17.79 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 28 DLESLSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 28 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
||-++|.+||...-..+...+-..|..+
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999988888888543
No 16
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=49.29 E-value=35 Score=19.69 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 036682 4 PLECNNLKAKIDLLQKNQRHYLG 26 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~r~~~G 26 (69)
+.|..+|..+++-|+..+.++|-
T Consensus 43 k~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 43 KEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888764
No 17
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=48.96 E-value=31 Score=16.49 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036682 36 DIQQLEQQLDTALKHIRSRKNQLMQESISELQK 68 (69)
Q Consensus 36 eL~~LE~~Le~~l~~VR~rK~~ll~~~i~~l~~ 68 (69)
.+..|+..+..|+..-.--+.-.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467889999999999888888888888888875
No 18
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.68 E-value=37 Score=17.33 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 036682 4 PLECNNLKAKIDLLQKNQRHY 24 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~r~~ 24 (69)
.+++.+|..+++.|+..+..+
T Consensus 18 k~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 18 KAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544443
No 19
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=47.68 E-value=36 Score=17.77 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q 036682 8 NNLKAKIDLLQKNQRHY 24 (69)
Q Consensus 8 ~~l~~~~e~L~~~~r~~ 24 (69)
+.|+++++.|+...+++
T Consensus 2 ~aLrqQv~aL~~qv~~L 18 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRL 18 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45666666666666554
No 20
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=44.94 E-value=46 Score=17.97 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 036682 4 PLECNNLKAKIDLLQKNQRHY 24 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~r~~ 24 (69)
..|...|++++..|+..+.++
T Consensus 39 ~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 39 IQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 457778888888888877765
No 21
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.63 E-value=1.6e+02 Score=23.35 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Q 036682 35 KDIQQLEQQLDTALKHIRS-----RKNQLMQESISELQK 68 (69)
Q Consensus 35 ~eL~~LE~~Le~~l~~VR~-----rK~~ll~~~i~~l~~ 68 (69)
.++..|+.+|+..-.+++. ++.+.+...|..|++
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEK 488 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 6778888888888777763 334455566666553
No 22
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=40.49 E-value=58 Score=17.20 Aligned_cols=35 Identities=31% Similarity=0.608 Sum_probs=22.0
Q ss_pred CCCCCHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHHH
Q 036682 29 LESLSLKDIQQ----LEQQLDTALKHIRSR---KNQLMQESI 63 (69)
Q Consensus 29 L~~Ls~~eL~~----LE~~Le~~l~~VR~r---K~~ll~~~i 63 (69)
|..+|++||+. |...++.-+..+|.| |.+-+.+-|
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 56788888764 667777777777765 555444433
No 23
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=40.24 E-value=39 Score=15.11 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 036682 6 ECNNLKAKIDLLQKNQ 21 (69)
Q Consensus 6 e~~~l~~~~e~L~~~~ 21 (69)
|+..++..|..|+..+
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5566666666666543
No 24
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=39.83 E-value=28 Score=18.44 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 28 DLESLSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 28 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
||-++|.+||...-..+...+-..|..+
T Consensus 3 elr~ls~~eL~~~l~elk~eL~~Lr~q~ 30 (58)
T PF00831_consen 3 ELRELSDEELQEKLEELKKELFNLRFQK 30 (58)
T ss_dssp HHCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888887777655
No 25
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=39.37 E-value=21 Score=23.01 Aligned_cols=17 Identities=35% Similarity=0.683 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHH
Q 036682 29 LESLSLKDIQQLEQQLD 45 (69)
Q Consensus 29 L~~Ls~~eL~~LE~~Le 45 (69)
|..||.+||.+|+..|+
T Consensus 21 L~~LS~EEL~~L~~el~ 37 (147)
T PF03250_consen 21 LAKLSPEELEELENELE 37 (147)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 45899999999998775
No 26
>PHA02109 hypothetical protein
Probab=39.33 E-value=94 Score=20.97 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=28.7
Q ss_pred HHHHHHhhhhcCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 16 LLQKNQRHYLGEDLESLS--LKDIQQLEQQLDTALKHIRSRKNQ 57 (69)
Q Consensus 16 ~L~~~~r~~~GedL~~Ls--~~eL~~LE~~Le~~l~~VR~rK~~ 57 (69)
.....-+...|++|++|+ ++++-.|+-.++.--...=.-|+.
T Consensus 172 ~ID~~~~~~t~~~L~~~~~~L~~I~~L~~ki~~LS~E~~Q~~~K 215 (233)
T PHA02109 172 RIDQVERSHTGENLEGLTDKLKQISELTIKLEALSDEACQVKHK 215 (233)
T ss_pred HHHHHHhccchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445788999999998 888888888877654443333333
No 27
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=39.10 E-value=1.8e+02 Score=22.58 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCC----------CCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 5 LECNNLKAKIDLLQKNQRHYLGEDLES----------LSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~GedL~~----------Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
..+..|+.+++.|...++.+.+.+-.+ ....|+..|+.++..+=.+.+.-|
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLk 626 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLK 626 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999998876543221 234578889988888765554444
No 28
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.01 E-value=71 Score=20.20 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 036682 5 LECNNLKAKIDLLQKNQRHYLG 26 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~G 26 (69)
.++..|..+++.+....+.+.|
T Consensus 52 ~eie~L~~el~~lt~el~~L~~ 73 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLEL 73 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444443
No 29
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=36.69 E-value=1.2e+02 Score=22.75 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 32 LSLKDIQQLEQQLDTALKHIRSRKNQLMQESIS 64 (69)
Q Consensus 32 Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~i~ 64 (69)
.+=.|..+||++|-.+..-+-++|.+..+.+.+
T Consensus 183 Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~ 215 (462)
T KOG2417|consen 183 VEETDIIQLERRLAQTMDMIISKKKKMAMAQLE 215 (462)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344689999999999999999999999988863
No 30
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=36.47 E-value=22 Score=21.64 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 036682 27 EDLESLSLKDIQQLEQQLD 45 (69)
Q Consensus 27 edL~~Ls~~eL~~LE~~Le 45 (69)
.-+++||.+|+..|..+++
T Consensus 85 kRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 85 KRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHhCCHHHHHHHHHHhc
Confidence 3478899999999998875
No 31
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=36.43 E-value=74 Score=17.21 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 27 EDLESLSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 27 edL~~Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
.++-++|.+||...-..+..-|-..|..+
T Consensus 4 ~elr~ls~~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 4 KELRELSVEELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999988888888888777544
No 32
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.64 E-value=1.1e+02 Score=18.45 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 036682 34 LKDIQQLEQQLDTALKHIRSRKNQL--MQESISEL 66 (69)
Q Consensus 34 ~~eL~~LE~~Le~~l~~VR~rK~~l--l~~~i~~l 66 (69)
++.+..||+++..-+..|..-|.++ +.++...|
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999888888888774 33444443
No 33
>PRK09039 hypothetical protein; Validated
Probab=33.39 E-value=1.8e+02 Score=20.74 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 036682 6 ECNNLKAKIDLLQKN 20 (69)
Q Consensus 6 e~~~l~~~~e~L~~~ 20 (69)
++..|+.+|+.|+..
T Consensus 138 ~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 138 QVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555554
No 34
>PF15206 FAM209: FAM209 family
Probab=33.10 E-value=60 Score=20.90 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 31 SLSLKDIQQLEQQLDTALKHIRSRKNQL 58 (69)
Q Consensus 31 ~Ls~~eL~~LE~~Le~~l~~VR~rK~~l 58 (69)
+..+.-|.+||-.|-.=+++||.-|.-.
T Consensus 91 D~af~TLtqlEmdLVkfVSkVrnLK~am 118 (150)
T PF15206_consen 91 DYAFNTLTQLEMDLVKFVSKVRNLKVAM 118 (150)
T ss_pred ceeechhHHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999999988654
No 35
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.94 E-value=1.3e+02 Score=18.29 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 036682 34 LKDIQQLEQQLDTALKHIRSRKNQL--MQESISEL 66 (69)
Q Consensus 34 ~~eL~~LE~~Le~~l~~VR~rK~~l--l~~~i~~l 66 (69)
++-+.+||+++..-+..+..-|.++ +.++...|
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L 41 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTAL 41 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999988888888888764 33444443
No 36
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=30.90 E-value=1.7e+02 Score=25.29 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 036682 5 LECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKH 50 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~ 50 (69)
.++.+|..+.+.++..+..+.+-...+|..+||..++..++.....
T Consensus 1102 e~v~kL~~e~~~~~~e~~~L~~~t~~~lw~~DL~~~~~~~~~~~~~ 1147 (1388)
T PTZ00108 1102 EKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEV 1147 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999989999999999999999886543
No 37
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=30.74 E-value=67 Score=21.31 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036682 35 KDIQQLEQQLDTALKHIRS 53 (69)
Q Consensus 35 ~eL~~LE~~Le~~l~~VR~ 53 (69)
.||+.||.||+.-+..||.
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3678889999888777764
No 38
>PLN03128 DNA topoisomerase 2; Provisional
Probab=30.51 E-value=55 Score=27.31 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHH
Q 036682 5 LECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQL 44 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~L 44 (69)
.++.+|..+.+.++..+..+..=.-.++..+||..++..+
T Consensus 1095 e~~~kL~~e~~~~~~ei~~l~~~t~~~~w~~DLd~~~~~~ 1134 (1135)
T PLN03128 1095 EKVDELRAERAKKETEVEELKKTTPEDLWRKDLDAFEEAL 1134 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 3667788888888888888887777778888888887765
No 39
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=30.24 E-value=69 Score=21.92 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 036682 3 WPLECNNLKAKIDLLQKNQRH 23 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~~~r~ 23 (69)
.++|.++|+.+++.+...+|+
T Consensus 121 lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 121 LRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888
No 40
>PHA03162 hypothetical protein; Provisional
Probab=29.04 E-value=1.6e+02 Score=18.74 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 3 WPLECNNLKAKIDLLQKNQRHYLGED----LESLSLKDIQQLEQQLDTALKHIRSRKN 56 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~~~r~~~Ged----L~~Ls~~eL~~LE~~Le~~l~~VR~rK~ 56 (69)
+..|+.+|+-+|-.|.+.+++=.|.+ =..||..+=+-+=...-.++...=++|.
T Consensus 18 LaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKI 75 (135)
T PHA03162 18 LAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKI 75 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999998877765 2347777766665555555555544443
No 41
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=27.68 E-value=1.6e+02 Score=18.29 Aligned_cols=54 Identities=22% Similarity=0.216 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 3 WPLECNNLKAKIDLLQKNQRHYLG----EDLESLSLKDIQQLEQQLDTALKHIRSRKN 56 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~~~r~~~G----edL~~Ls~~eL~~LE~~Le~~l~~VR~rK~ 56 (69)
+..++.+|+-+|-.|.+.+++=.| .+=..||..+=+-+=...-.+|...=++|.
T Consensus 8 LaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KI 65 (118)
T PF05812_consen 8 LAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKI 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999888 666678888776666666665555544443
No 42
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=27.57 E-value=2e+02 Score=19.54 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 4 PLECNNLKAKIDLLQKNQRHYLGEDLESLSLK------DIQQLEQQLDTALKHIRSRKNQLMQ 60 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~------eL~~LE~~Le~~l~~VR~rK~~ll~ 60 (69)
+.+.+.++..++.|- ..|-.+|++++-++.+ .-..||..+-.--++.|+++.....
T Consensus 14 s~~a~~~k~~~~~la-~~~~~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR~~~AE 75 (228)
T PF06721_consen 14 SKEAAHAKSEHATLA-YQRTVMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRRINYAE 75 (228)
T ss_pred hHHhhhhhhHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777764 5678899988766543 2345777777777777776655443
No 43
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=27.53 E-value=1.6e+02 Score=20.35 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=19.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 036682 35 KDIQQLEQQL---DTALKHIRSRKNQLMQ 60 (69)
Q Consensus 35 ~eL~~LE~~L---e~~l~~VR~rK~~ll~ 60 (69)
.||..||.|+ +.++.++++.+.++..
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~ 43 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQS 43 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888654 5678888888887654
No 44
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=27.52 E-value=1.3e+02 Score=18.20 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 036682 5 LECNNLKAKIDLLQKNQRHYL 25 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~ 25 (69)
.|+..|...++.|+..++.+.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666655543
No 45
>PHA03155 hypothetical protein; Provisional
Probab=27.20 E-value=1.6e+02 Score=18.21 Aligned_cols=54 Identities=19% Similarity=0.078 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 3 WPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKN 56 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~ 56 (69)
+..|+.+|+-+|-.|.+.+++=.+.+=..||..+=..+=...-++|...=++|.
T Consensus 13 LaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KI 66 (115)
T PHA03155 13 LEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKI 66 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999988777665778888777776666666665555543
No 46
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=26.79 E-value=1.4e+02 Score=20.47 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhh------hcCCCCCCCHHHHHHH
Q 036682 10 LKAKIDLLQKNQRHY------LGEDLESLSLKDIQQL 40 (69)
Q Consensus 10 l~~~~e~L~~~~r~~------~GedL~~Ls~~eL~~L 40 (69)
|+.-+......-+++ .|-++.++|++++..|
T Consensus 207 Lr~a~~KF~~Rf~~~E~~~~~~g~~~~~~slee~~~l 243 (248)
T TIGR00444 207 LQKANEKFERRFREVERIVAARGLELTGVDLEEMEEL 243 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHH
Confidence 444444444444444 4889999999999876
No 47
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=26.78 E-value=1.1e+02 Score=16.05 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036682 28 DLESLSLKDIQQLEQQLDTALKHIRSR 54 (69)
Q Consensus 28 dL~~Ls~~eL~~LE~~Le~~l~~VR~r 54 (69)
|+-++|.+||...-..+...+-..|..
T Consensus 2 eir~ls~~eL~~~l~~l~~elf~Lr~q 28 (57)
T cd00427 2 ELREKSDEELQEKLDELKKELFNLRFQ 28 (57)
T ss_pred hHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888777777777766643
No 48
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=26.53 E-value=66 Score=23.98 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=9.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 036682 30 ESLSLKDIQQLEQQLDTALKHI 51 (69)
Q Consensus 30 ~~Ls~~eL~~LE~~Le~~l~~V 51 (69)
..||-.+...|+++.+.....|
T Consensus 397 ~~LT~~e~~kL~~e~~~l~~ei 418 (439)
T PHA02592 397 YSMTSDEREKLQKEAEELEKEH 418 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 49
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=25.61 E-value=85 Score=20.68 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 036682 29 LESLSLKDIQQLEQQLDTAL 48 (69)
Q Consensus 29 L~~Ls~~eL~~LE~~Le~~l 48 (69)
|.+-|+.+|..||.++..=|
T Consensus 140 l~gKs~~eL~~Le~qI~~KL 159 (191)
T PF10312_consen 140 LSGKSYEELEELEQQIKAKL 159 (191)
T ss_pred HccCCHHHHHHHHHHHHHHh
Confidence 45689999999999987654
No 50
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.30 E-value=73 Score=18.24 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=24.2
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 18 QKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 18 ~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
+..+-.+.|| |.++|.-=|.-+..||..||..+
T Consensus 4 r~~~~~Ll~e-----~~~~l~dqeNLi~~GLDSiR~M~ 36 (74)
T COG3433 4 REQIAELLGE-----SVEELDDQENLIDYGLDSIRMMA 36 (74)
T ss_pred HHHHHHHHcC-----ChhhcCchhhHHHhchhHHHHHH
Confidence 3444455666 77777777888999999999754
No 51
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=25.16 E-value=1.2e+02 Score=16.69 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=20.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 036682 27 EDLESLSLKDIQQLEQQLDTALKHIRS 53 (69)
Q Consensus 27 edL~~Ls~~eL~~LE~~Le~~l~~VR~ 53 (69)
.||-++|.+||...-..+..-+-..|.
T Consensus 7 ~elr~ls~~eL~~~l~elk~eLf~LR~ 33 (69)
T PRK14549 7 SEIREMSPEEREEKLEELKLELLKERA 33 (69)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888777777774
No 52
>COG4496 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.68 E-value=98 Score=18.56 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 036682 31 SLSLKDIQQLEQQLDTAL 48 (69)
Q Consensus 31 ~Ls~~eL~~LE~~Le~~l 48 (69)
-+++.|++.|.+.++.|-
T Consensus 34 lcTinEiqslaqRlqVa~ 51 (100)
T COG4496 34 LCTINEIQSLAQRLQVAK 51 (100)
T ss_pred hcCHHHHHHHHHHHHHHH
Confidence 389999999999998764
No 53
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=24.65 E-value=25 Score=26.40 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhh----------hhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 3 WPLECNNLKAKIDLLQKNQRH----------YLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQES 62 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~~~r~----------~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~ 62 (69)
.+-+++.|..+++.++...++ ...+.+..| ..+|..||+++..-...|.+-|..+|.+.
T Consensus 461 iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl-~~~L~ele~~I~~~~~~i~~~ka~Il~Ne 529 (539)
T PF10243_consen 461 IQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPL-KAQLAELEQQIKDQQDKICAVKANILKNE 529 (539)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444444444433 233444444 35799999999999999999999988754
No 54
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=24.63 E-value=73 Score=17.91 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=17.6
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHH
Q 036682 23 HYLGEDLESLSLKDIQQLEQQLDT 46 (69)
Q Consensus 23 ~~~GedL~~Ls~~eL~~LE~~Le~ 46 (69)
.-..+.+.+.|..|+...|+.|=.
T Consensus 20 ~~F~~~~~~Vs~~EI~~~Eq~Li~ 43 (71)
T PF04282_consen 20 EEFKKLFSDVSASEISAAEQELIQ 43 (71)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHH
Confidence 334456778899999999988754
No 55
>PLN03237 DNA topoisomerase 2; Provisional
Probab=24.50 E-value=1.3e+02 Score=26.01 Aligned_cols=45 Identities=31% Similarity=0.288 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 036682 5 LECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALK 49 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~ 49 (69)
..+.+|..+.+.++..+..+.+-.-.+|..+||..|+..++....
T Consensus 1126 E~~~kL~~~~~~k~~el~~l~~~t~~~lW~~DLd~f~~~~~~~~~ 1170 (1465)
T PLN03237 1126 EKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLDK 1170 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999987553
No 56
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=24.40 E-value=1.1e+02 Score=21.45 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=28.9
Q ss_pred HHHHHHHhhhhc--CCCCCCCHHHHHHHHHHHHHHHHH
Q 036682 15 DLLQKNQRHYLG--EDLESLSLKDIQQLEQQLDTALKH 50 (69)
Q Consensus 15 e~L~~~~r~~~G--edL~~Ls~~eL~~LE~~Le~~l~~ 50 (69)
..+-..+|+... ++--+||++++..+|.+....|.+
T Consensus 220 ~~~l~~HRq~fcW~DeW~gltmedIR~~E~etq~~L~~ 257 (260)
T cd08889 220 KVMLRAHRQAWCWQDEWYGLTMEDIRKLEEETQLALAQ 257 (260)
T ss_pred HHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 455667777665 566789999999999999888875
No 57
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=23.70 E-value=87 Score=23.82 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCC--CCC--HHHHHHHHHHHHHHHHH
Q 036682 10 LKAKIDLLQKNQRHYLGEDLE--SLS--LKDIQQLEQQLDTALKH 50 (69)
Q Consensus 10 l~~~~e~L~~~~r~~~GedL~--~Ls--~~eL~~LE~~Le~~l~~ 50 (69)
|++-...|+..+|++-+. |. ..+ =.|++.||+.|+.++.+
T Consensus 193 LkqnS~~LEekLr~lq~q-LqdE~prrqe~e~qELeqkleagls~ 236 (558)
T PF15358_consen 193 LKQNSALLEEKLRYLQQQ-LQDETPRRQEAEWQELEQKLEAGLSR 236 (558)
T ss_pred cccchHHHHHHHHHHHHH-hcccCcchhhhhHHHHHHHHhhhhhh
Confidence 455556777778877763 22 233 56899999999999874
No 58
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=23.69 E-value=1.5e+02 Score=16.88 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 036682 10 LKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKH 50 (69)
Q Consensus 10 l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~ 50 (69)
|+..++.|+..+.+.- .+++-+-..|..|-.+++..+..
T Consensus 2 L~~~L~~L~~eL~~~~--~ld~~~~~~L~~l~~dIe~~L~~ 40 (85)
T PF14357_consen 2 LQELLEKLHQELEQNP--PLDEETRAELSSLDDDIEAQLAE 40 (85)
T ss_pred HHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhc
Confidence 5566667776666543 36677778888888888887765
No 59
>PRK01371 sec-independent translocase; Provisional
Probab=23.44 E-value=1.4e+02 Score=18.97 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCHHHH
Q 036682 7 CNNLKAKIDLLQKNQRHYLGEDLESLSLKDI 37 (69)
Q Consensus 7 ~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL 37 (69)
+..+++.....+..++.-+|.++.++.+.+|
T Consensus 36 ir~~R~~~~~ak~~i~~Elg~ef~d~d~r~l 66 (137)
T PRK01371 36 LRQLREMANNARNDLRSELGPEFADLDLRDL 66 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhcccchhhc
Confidence 3456777778889999999998888876554
No 60
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=23.40 E-value=2.7e+02 Score=20.63 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 036682 3 WPLECNNLKAKIDLLQKNQRHYLGEDL 29 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~~~r~~~GedL 29 (69)
++.|-++|+++++.|....-++.-+-+
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777888888888887777754444
No 61
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=22.95 E-value=1.6e+02 Score=17.16 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036682 28 DLESLSLKDIQQLEQQLDTALKHIRSR 54 (69)
Q Consensus 28 dL~~Ls~~eL~~LE~~Le~~l~~VR~r 54 (69)
||-++|.+||...-..+..-+-..|..
T Consensus 4 elR~lS~eEL~e~L~elkkELf~LR~q 30 (87)
T PRK00461 4 ELRKKSVEELEKLVIELKAELFTLRFK 30 (87)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788877777777777666643
No 62
>PF15335 CAAP1: Caspase activity and apoptosis inhibitor 1
Probab=21.20 E-value=60 Score=18.03 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=19.8
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHH
Q 036682 18 QKNQRHYLGEDLESLSLKDIQQL 40 (69)
Q Consensus 18 ~~~~r~~~GedL~~Ls~~eL~~L 40 (69)
...++.|.-+.|-+++++++..+
T Consensus 25 ~kkl~~MlPd~LK~~~l~elk~l 47 (64)
T PF15335_consen 25 EKKLQKMLPDILKGCSLEELKEL 47 (64)
T ss_pred HHHHHHHCHHHHhcCCHHHHHHH
Confidence 56778888889999999999876
No 63
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=21.05 E-value=27 Score=17.39 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 28 DLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQE 61 (69)
Q Consensus 28 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~ 61 (69)
||..+|+.||..+=+.+... ..-+.+|.+++..
T Consensus 1 eL~~~~~~eL~~iAk~lgI~-~~~~~~K~eLI~~ 33 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIE-GYSKMRKQELIFA 33 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-T-TGCCS-HHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCC-CCCcCCHHHHHHH
Confidence 35678888888877665442 1223456665543
No 64
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=20.44 E-value=1.8e+02 Score=16.93 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 036682 6 ECNNLKAKIDLLQKNQRHYL 25 (69)
Q Consensus 6 e~~~l~~~~e~L~~~~r~~~ 25 (69)
++..|++++..|++.++.++
T Consensus 79 ~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 79 EIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666655543
No 65
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=20.35 E-value=77 Score=15.57 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.1
Q ss_pred hcCCCCCCCHHHHHHH
Q 036682 25 LGEDLESLSLKDIQQL 40 (69)
Q Consensus 25 ~GedL~~Ls~~eL~~L 40 (69)
.|+..+.+|+++|..|
T Consensus 7 ~g~~~GP~s~~el~~l 22 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQL 22 (45)
T ss_pred CCeEECCcCHHHHHHH
Confidence 5677888999999876
No 66
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=20.29 E-value=2e+02 Score=18.61 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=18.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHH
Q 036682 26 GEDLESLSLKDIQQLEQQLDTALK 49 (69)
Q Consensus 26 GedL~~Ls~~eL~~LE~~Le~~l~ 49 (69)
|-||..||++.|..|-++++.-+.
T Consensus 7 ~idltkLsleQL~~lk~q~dqEl~ 30 (153)
T KOG3048|consen 7 GIDLTKLSLEQLGALKKQFDQELN 30 (153)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHH
Confidence 458999999999999887765443
No 67
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.21 E-value=1.9e+02 Score=16.46 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 31 SLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQ 67 (69)
Q Consensus 31 ~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~i~~l~ 67 (69)
++|++|+..+=..-......+=..+...+.++|..++
T Consensus 57 G~~l~eI~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~ 93 (96)
T cd04788 57 GFSLREIGRALDGPDFDPLELLRRQLARLEEQLELAT 93 (96)
T ss_pred CCCHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3777777776544333445555556666667776665
Done!