Query 036682
Match_columns 69
No_of_seqs 125 out of 1076
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a93_B MAX protein, coiled coi 79.6 2.7 9.2E-05 20.0 3.1 21 4-24 13-33 (34)
2 2jee_A YIIU; FTSZ, septum, coi 78.3 5.6 0.00019 22.3 4.7 22 32-53 3-24 (81)
3 1e52_A Excinuclease ABC subuni 52.2 12 0.00043 19.7 2.5 41 28-68 13-57 (63)
4 1g6u_A Domain swapped dimer; d 44.1 29 0.001 17.0 7.0 26 30-55 15-40 (48)
5 1x4t_A Hypothetical protein LO 41.5 46 0.0016 19.0 3.9 28 3-30 57-84 (92)
6 1j1d_B Troponin T, TNT; THIN f 37.3 49 0.0017 19.2 3.7 32 28-59 38-69 (106)
7 1ytz_T Troponin T; muscle, THI 36.7 52 0.0018 19.0 3.7 32 28-59 38-69 (107)
8 4dzn_A Coiled-coil peptide CC- 36.1 34 0.0012 15.6 3.1 18 4-21 8-25 (33)
9 1j1e_C Troponin I, TNI; THIN f 36.0 83 0.0028 19.9 6.4 51 9-59 30-85 (180)
10 1nkp_B MAX protein, MYC proto- 35.2 43 0.0015 17.9 3.1 20 5-24 61-80 (83)
11 3anw_B GINS23, putative unchar 34.3 86 0.0029 19.6 4.8 49 7-56 82-132 (171)
12 2lw9_A Unconventionnal myosin- 33.5 45 0.0016 16.9 2.7 33 6-39 7-39 (51)
13 3sl9_C B-cell CLL/lymphoma 9 p 32.8 52 0.0018 16.7 2.9 22 25-46 3-24 (55)
14 3osj_A Phycobilisome LCM core- 32.7 24 0.00083 21.7 1.9 39 15-53 27-65 (147)
15 1t6f_A Geminin; coiled-coil, c 31.9 46 0.0016 15.8 2.6 20 6-25 8-27 (37)
16 3oa7_A Head morphogenesis prot 31.5 96 0.0033 20.1 4.6 36 5-40 51-86 (206)
17 3ohw_B Phycobilisome LCM core- 29.6 14 0.00048 22.8 0.4 39 15-53 27-66 (148)
18 2aze_A Transcription factor DP 29.0 1.1E+02 0.0036 19.0 4.5 26 33-58 3-28 (155)
19 2wh0_Q Pkcev3, protein kinase 27.7 49 0.0017 14.8 2.1 15 35-49 13-27 (31)
20 3l4j_A DNA topoisomerase 2; to 26.3 82 0.0028 24.2 4.1 44 5-48 707-750 (757)
21 2trc_P Phosducin, MEKA, PP33; 25.8 92 0.0031 19.3 3.8 34 28-61 55-90 (217)
22 3k6t_A Female germline-specifi 25.5 66 0.0023 16.9 2.6 19 36-54 26-44 (60)
23 3r8s_Y 50S ribosomal protein L 25.2 65 0.0022 16.6 2.6 29 27-55 4-32 (63)
24 1j1d_C Troponin I, TNI; THIN f 25.0 1.2E+02 0.004 18.2 8.0 51 9-59 30-85 (133)
25 2l5g_B Putative uncharacterize 25.0 70 0.0024 15.6 3.4 21 4-24 15-35 (42)
26 2xdj_A Uncharacterized protein 24.2 97 0.0033 17.0 3.5 19 8-26 23-41 (83)
27 1go4_E MAD1 (mitotic arrest de 23.3 74 0.0025 18.3 2.7 23 4-26 74-96 (100)
28 3skq_A Mitochondrial distribut 23.0 66 0.0022 21.4 2.8 31 9-39 124-154 (249)
29 3qx3_A DNA topoisomerase 2-bet 22.6 79 0.0027 24.5 3.4 46 4-49 733-778 (803)
30 1kcm_A PITP alpha, phosphatidy 21.6 22 0.00074 24.0 0.2 41 13-53 217-259 (270)
31 2zjr_V 50S ribosomal protein L 21.4 1E+02 0.0034 16.1 4.0 29 27-55 4-32 (67)
32 2yy0_A C-MYC-binding protein; 20.1 98 0.0034 15.5 3.5 19 5-23 19-37 (53)
No 1
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=79.65 E-value=2.7 Score=20.00 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 036682 4 PLECNNLKAKIDLLQKNQRHY 24 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~r~~ 24 (69)
+++++.++.++..|+..+|.+
T Consensus 13 qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHHHHHhc
Confidence 567888999999998888764
No 2
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.31 E-value=5.6 Score=22.32 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 036682 32 LSLKDIQQLEQQLDTALKHIRS 53 (69)
Q Consensus 32 Ls~~eL~~LE~~Le~~l~~VR~ 53 (69)
+|++=|.+||..++.|+..|-.
T Consensus 3 MS~ElleqLE~KIq~avdtI~l 24 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTITL 24 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999996643
No 3
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=52.23 E-value=12 Score=19.74 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036682 28 DLESLSLKD----IQQLEQQLDTALKHIRSRKNQLMQESISELQK 68 (69)
Q Consensus 28 dL~~Ls~~e----L~~LE~~Le~~l~~VR~rK~~ll~~~i~~l~~ 68 (69)
+..+++.++ +..|+.++..|.....--+...+.++|..|+.
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~ 57 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 57 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 445555333 67788999999888888888888888888764
No 4
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=44.09 E-value=29 Score=17.04 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 30 ESLSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 30 ~~Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
+++|.+||-.||..|+.--.+.-.-|
T Consensus 15 egfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999988876554444443
No 5
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=41.52 E-value=46 Score=18.96 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 036682 3 WPLECNNLKAKIDLLQKNQRHYLGEDLE 30 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~~~r~~~GedL~ 30 (69)
+..|+.+|-.+-...+..++.+.|.|-.
T Consensus 57 LNDEINkL~rEK~~WE~rI~eLGGpdY~ 84 (92)
T 1x4t_A 57 LNDEINKLLREKGHWEVRIKELGGPDYG 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 4567888888889999999999998864
No 6
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=37.29 E-value=49 Score=19.16 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 28 DLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 59 (69)
Q Consensus 28 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll 59 (69)
++++||.++|+.+=+.|...+..+=+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 78999999999999999999999988877653
No 7
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=36.67 E-value=52 Score=19.03 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 28 DLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 59 (69)
Q Consensus 28 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll 59 (69)
++++||.++|+.+=+.|...+..+=+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 88999999999999999999999888877653
No 8
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.11 E-value=34 Score=15.55 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036682 4 PLECNNLKAKIDLLQKNQ 21 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~ 21 (69)
.+|++.|++++..|.-.+
T Consensus 8 kqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 9
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=36.04 E-value=83 Score=19.93 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhhhcC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 9 NLKAKIDLLQKNQRHYLGE-----DLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 59 (69)
Q Consensus 9 ~l~~~~e~L~~~~r~~~Ge-----dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll 59 (69)
.|.++-+.....-+.++.| ++++||.++|+.+=+.|...+..+=+-|..+-
T Consensus 30 ~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3555555555555555553 78889999999999999999988888776653
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.21 E-value=43 Score=17.91 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 036682 5 LECNNLKAKIDLLQKNQRHY 24 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~ 24 (69)
.+...|+.++..|+..+..+
T Consensus 61 ~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 61 QDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555554443
No 11
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=34.32 E-value=86 Score=19.60 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 7 CNNLKAKIDLLQKNQRHYLGEDLES--LSLKDIQQLEQQLDTALKHIRSRKN 56 (69)
Q Consensus 7 ~~~l~~~~e~L~~~~r~~~GedL~~--Ls~~eL~~LE~~Le~~l~~VR~rK~ 56 (69)
|.+.+.-+..|+..+|...+.|+.+ ..+++|..+.+.+. .+..+|-+|.
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~-~L~~~Ri~KI 132 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLR-DLKLIRFNKI 132 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4566777888999998888778665 33568777766654 4566676664
No 12
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=33.52 E-value=45 Score=16.92 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHH
Q 036682 6 ECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQ 39 (69)
Q Consensus 6 e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~ 39 (69)
|+-+|-.+|+.|++..-.-+- -|..-|..+|+.
T Consensus 7 EILRLErEIE~Lqrqke~~~~-~L~e~s~~eL~~ 39 (51)
T 2lw9_A 7 EILRLEKEIEDLQRMKEQQEL-SLTEASLQKLQE 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHhHHHHHHH
Confidence 566677777777755433221 233445555544
No 13
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=32.80 E-value=52 Score=16.69 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=14.2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHH
Q 036682 25 LGEDLESLSLKDIQQLEQQLDT 46 (69)
Q Consensus 25 ~GedL~~Ls~~eL~~LE~~Le~ 46 (69)
+|++-++||-+.|..=|..|+.
T Consensus 3 ~~~n~~gls~eqlehrerslqt 24 (55)
T 3sl9_C 3 LGENPDGLSQEQLEHRERSLQT 24 (55)
T ss_dssp ----CCCCCHHHHHHHHHHHHH
T ss_pred cccCCcccCHHHHHHHHHHHHH
Confidence 6889999999988877766553
No 14
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=32.69 E-value=24 Score=21.73 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 036682 15 DLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRS 53 (69)
Q Consensus 15 e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~ 53 (69)
......-||..|.|+..+.-..+..||.+|.++--.||.
T Consensus 27 ~vI~AaYRQVf~~~~~~~~~~r~~~lESql~nG~ItVRe 65 (147)
T 3osj_A 27 AVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKE 65 (147)
T ss_dssp HHHHHHHHHHHSSCCCGGGCHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHhcCcchhhhhcccccHHHHHHcCCccHHH
Confidence 456788899999887655556799999999998777765
No 15
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=31.86 E-value=46 Score=15.79 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 036682 6 ECNNLKAKIDLLQKNQRHYL 25 (69)
Q Consensus 6 e~~~l~~~~e~L~~~~r~~~ 25 (69)
|-.+|.+.++.-...+.++.
T Consensus 8 ENekLhk~ie~KdeeIa~Lk 27 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 16
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=31.45 E-value=96 Score=20.11 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHH
Q 036682 5 LECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQL 40 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~L 40 (69)
+..+.++.++..|+..+..+.|.--+.+|++.+.+.
T Consensus 51 ~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks 86 (206)
T 3oa7_A 51 KSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQS 86 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhc
Confidence 345678889999999999999977777888876654
No 17
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=29.59 E-value=14 Score=22.82 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhcCCCCCCCH-HHHHHHHHHHHHHHHHHHH
Q 036682 15 DLLQKNQRHYLGEDLESLSL-KDIQQLEQQLDTALKHIRS 53 (69)
Q Consensus 15 e~L~~~~r~~~GedL~~Ls~-~eL~~LE~~Le~~l~~VR~ 53 (69)
....+.-||..|.++...-. .++..||.+|.++--.||.
T Consensus 27 ~vI~AaYRQVf~~~~~~~~~~~r~~~lESqlrnG~IsVRe 66 (148)
T 3ohw_B 27 NAIRAAYRQVFERDLEPYIINSEFTALESKLSNNEINVKE 66 (148)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHTHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHhcCccchhhhhcccccHHHHHHcCCcCHHH
Confidence 45678889999988765433 3789999999988766665
No 18
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=28.97 E-value=1.1e+02 Score=19.00 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 33 SLKDIQQLEQQLDTALKHIRSRKNQL 58 (69)
Q Consensus 33 s~~eL~~LE~~Le~~l~~VR~rK~~l 58 (69)
|..|...||..-..-..+|+.++.++
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L 28 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL 28 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777766553
No 19
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=27.75 E-value=49 Score=14.80 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 036682 35 KDIQQLEQQLDTALK 49 (69)
Q Consensus 35 ~eL~~LE~~Le~~l~ 49 (69)
.|+..||.++..||+
T Consensus 13 qeikelennirkals 27 (31)
T 2wh0_Q 13 QEIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHHhc
Confidence 467778887777664
No 20
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=26.26 E-value=82 Score=24.22 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 036682 5 LECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTAL 48 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l 48 (69)
.++.+|.++.+..+..+..+.+-.-.+|..+||..|+..++...
T Consensus 707 E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~~~~~~ 750 (757)
T 3l4j_A 707 ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFL 750 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998888999999999998887654
No 21
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=25.82 E-value=92 Score=19.29 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 036682 28 DLESLSLKDIQQLE--QQLDTALKHIRSRKNQLMQE 61 (69)
Q Consensus 28 dL~~Ls~~eL~~LE--~~Le~~l~~VR~rK~~ll~~ 61 (69)
-.+.++++||..+| ...+..+..+|.++.+-|..
T Consensus 55 ~~~~~~~~e~~~~~~d~~d~~fl~~~r~~Rl~el~~ 90 (217)
T 2trc_P 55 MSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQ 90 (217)
T ss_dssp CCCSSCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhccCChhhhhhhccccccHHHHHHHHHHHHHHHHH
Confidence 34568999999998 45678899999988876654
No 22
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=25.46 E-value=66 Score=16.89 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036682 36 DIQQLEQQLDTALKHIRSR 54 (69)
Q Consensus 36 eL~~LE~~Le~~l~~VR~r 54 (69)
=..++|.-|+.-+.+||.-
T Consensus 26 ~f~HlerLLdeEI~RVR~~ 44 (60)
T 3k6t_A 26 MFSNVERLLDDEIGRVRVA 44 (60)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999974
No 23
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=25.21 E-value=65 Score=16.64 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 27 EDLESLSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 27 edL~~Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
.||-++|.+||...-..+..-+-..|..+
T Consensus 4 ~elr~~s~~EL~~~l~elk~Elf~LR~q~ 32 (63)
T 3r8s_Y 4 KELREKSVEELNTELLNLLREQFNLRMQA 32 (63)
T ss_dssp GGTTSCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888777777777777666644
No 24
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=25.02 E-value=1.2e+02 Score=18.23 Aligned_cols=51 Identities=16% Similarity=0.325 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 9 NLKAKIDLLQKNQRHYLG-----EDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 59 (69)
Q Consensus 9 ~l~~~~e~L~~~~r~~~G-----edL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll 59 (69)
.|.++-+.....-+.++. -+++++|.++|+.+=+.|...+..+=+-|..+-
T Consensus 30 ~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 455555555555555555 378999999999999999999998888876653
No 25
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.02 E-value=70 Score=15.63 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 036682 4 PLECNNLKAKIDLLQKNQRHY 24 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~r~~ 24 (69)
..|+++-..+|..++..++.+
T Consensus 15 drEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888887765
No 26
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.22 E-value=97 Score=16.99 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 036682 8 NNLKAKIDLLQKNQRHYLG 26 (69)
Q Consensus 8 ~~l~~~~e~L~~~~r~~~G 26 (69)
..|..+++.|+..++.+-|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4466777788888888777
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.27 E-value=74 Score=18.26 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 036682 4 PLECNNLKAKIDLLQKNQRHYLG 26 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~r~~~G 26 (69)
..++..|+.+++.|+..++.+.+
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778899999999999988765
No 28
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=23.05 E-value=66 Score=21.40 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCHHHHHH
Q 036682 9 NLKAKIDLLQKNQRHYLGEDLESLSLKDIQQ 39 (69)
Q Consensus 9 ~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~ 39 (69)
+|+.....+...-+-+.-|++++||..||+.
T Consensus 124 rLr~rl~~I~~DDr~I~~EGV~sLs~~ELr~ 154 (249)
T 3skq_A 124 QIRSKLKDIMNDDKTIDYEGVESLSQEELYQ 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHhCcccCCHHHHHH
Confidence 4566666777777777777899999999973
No 29
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=22.58 E-value=79 Score=24.50 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 036682 4 PLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALK 49 (69)
Q Consensus 4 ~~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~ 49 (69)
..++.+|.++....+..+..+.+-.-.+|..+||..|+..++..-.
T Consensus 733 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~~~~~e~ 778 (803)
T 3qx3_A 733 KEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVES 778 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999988899999999999988876554
No 30
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=21.62 E-value=22 Score=23.98 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhhc--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 036682 13 KIDLLQKNQRHYLG--EDLESLSLKDIQQLEQQLDTALKHIRS 53 (69)
Q Consensus 13 ~~e~L~~~~r~~~G--edL~~Ls~~eL~~LE~~Le~~l~~VR~ 53 (69)
.-..+-..+|+... ++--+||++|+..+|.+....|.++|.
T Consensus 217 ~r~i~~~~HRq~fcW~DeW~glTmedIR~~E~etq~~L~~~~~ 259 (270)
T 1kcm_A 217 EKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259 (270)
T ss_dssp HHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHCCCC---
T ss_pred HHHHHHHHHHHHhccHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777654 344679999999999999988887543
No 31
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=21.39 E-value=1e+02 Score=16.10 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 27 EDLESLSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 27 edL~~Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
.||-++|.+||...-..+..-+-..|..+
T Consensus 4 ~elr~~s~~EL~~~l~elk~ELf~LR~q~ 32 (67)
T 2zjr_V 4 SEMRNLQATDFAKEIDARKKELMELRFQA 32 (67)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888877777777777666554
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.05 E-value=98 Score=15.49 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 036682 5 LECNNLKAKIDLLQKNQRH 23 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~ 23 (69)
.+++.|+.+++.|+...-.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~ 37 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEA 37 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3555566665555554433
Done!