Query 036682
Match_columns 69
No_of_seqs 125 out of 1076
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 06:55:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036682.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036682hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t27a_ d.129.3.4 (A:) Phoshat 59.4 5.5 0.0004 25.3 3.8 42 12-53 216-259 (269)
2 d1siga_ a.177.1.1 (A:) Sigma70 50.8 18 0.0013 22.0 5.3 59 3-63 214-272 (334)
3 d1e52a_ a.2.9.1 (A:) C-termina 49.9 8.4 0.00061 18.7 2.8 32 37-68 19-50 (56)
4 d2zjrv1 a.2.2.1 (V:1-66) Ribos 39.9 19 0.0014 17.6 4.1 29 27-55 4-32 (66)
5 d1x4ta1 a.2.15.1 (A:7-86) Pre- 35.1 28 0.002 18.0 3.9 28 3-30 51-78 (80)
6 d1r73a_ a.2.2.1 (A:) Ribosomal 33.6 12 0.00087 18.4 1.9 28 28-55 5-32 (66)
7 d3d19a2 a.29.13.1 (A:145-274) 30.7 40 0.0029 18.4 9.0 59 5-63 38-96 (130)
8 d1bjta_ e.11.1.1 (A:) DNA topo 30.5 24 0.0018 24.9 3.7 43 5-47 709-751 (760)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 18.7 58 0.0043 16.1 3.5 12 10-21 71-82 (88)
10 d1tuza_ a.39.1.7 (A:) Diacylgl 18.1 59 0.0043 17.1 3.1 26 25-50 1-26 (118)
No 1
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=59.35 E-value=5.5 Score=25.30 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhc--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 036682 12 AKIDLLQKNQRHYLG--EDLESLSLKDIQQLEQQLDTALKHIRS 53 (69)
Q Consensus 12 ~~~e~L~~~~r~~~G--edL~~Ls~~eL~~LE~~Le~~l~~VR~ 53 (69)
..-..+-..+|+... ++--+||++|+..+|.+....|.++|.
T Consensus 216 ~~r~~~l~~HRq~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 216 QEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 333456667777665 355789999999999999999998886
No 2
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=50.80 E-value=18 Score=22.04 Aligned_cols=59 Identities=7% Similarity=0.331 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 3 WPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESI 63 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~i 63 (69)
|...+......+...+..++.+. +-.++++.++..+-..+..+-...+.-|.+++...+
T Consensus 214 ~~~~l~~~~~~I~~~q~kl~~ie--~~~gl~~~elk~i~~~i~~ge~~~~~ak~~~~~~~~ 272 (334)
T d1siga_ 214 WSEKLHDVSEEVHRALQKLQQIE--EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANL 272 (334)
T ss_dssp HHHHGGGTHHHHHHHHHHHHHHH--HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHhhccchHHHHHHhHH
Confidence 44444455666666666666653 345699999999999999999999999999887544
No 3
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=49.86 E-value=8.4 Score=18.71 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036682 37 IQQLEQQLDTALKHIRSRKNQLMQESISELQK 68 (69)
Q Consensus 37 L~~LE~~Le~~l~~VR~rK~~ll~~~i~~l~~ 68 (69)
+..||.++..|.....--+.-.+.++|..|++
T Consensus 19 i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~ 50 (56)
T d1e52a_ 19 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 50 (56)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 77899999999998888888888888888764
No 4
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=39.89 E-value=19 Score=17.59 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=24.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 27 EDLESLSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 27 edL~~Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
.||-++|.+||...-..+...+-..|..+
T Consensus 4 ~elr~~s~~eL~~~l~~lk~elf~LRfq~ 32 (66)
T d2zjrv1 4 SEMRNLQATDFAKEIDARKKELMELRFQA 32 (66)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999988888887654
No 5
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.08 E-value=28 Score=18.01 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 036682 3 WPLECNNLKAKIDLLQKNQRHYLGEDLE 30 (69)
Q Consensus 3 ~~~e~~~l~~~~e~L~~~~r~~~GedL~ 30 (69)
+..|+.+|-.+-...+..++.+.|.|-.
T Consensus 51 LNDeINkL~reK~~WE~rI~eLGGpdY~ 78 (80)
T d1x4ta1 51 LNDEINKLLREKGHWEVRIKELGGPDYG 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 3567788888888899999999998753
No 6
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=33.58 E-value=12 Score=18.44 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036682 28 DLESLSLKDIQQLEQQLDTALKHIRSRK 55 (69)
Q Consensus 28 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK 55 (69)
||-++|.+||...-..+...+-..|..+
T Consensus 5 elr~ls~~eL~~~l~~l~~el~~LRfq~ 32 (66)
T d1r73a_ 5 ELRNYTDEELKNLLEEKKRQLMELRFQL 32 (66)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999888888888888877654
No 7
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=30.67 E-value=40 Score=18.44 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036682 5 LECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESI 63 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~ll~~~i 63 (69)
.+.......-+.|-..-+.+.|.-..+.++..+..+-++...++..+|.=|.++....+
T Consensus 38 ~~A~~f~~~Fe~Ll~~a~~l~~~~~~~~~~~~l~~ln~~~~~~~~~~~~FK~~~~~~~l 96 (130)
T d3d19a2 38 DTARNFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIE 96 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777888887778889999999999999999999999988876544
No 8
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.53 E-value=24 Score=24.90 Aligned_cols=43 Identities=9% Similarity=0.051 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHH
Q 036682 5 LECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTA 47 (69)
Q Consensus 5 ~e~~~l~~~~e~L~~~~r~~~GedL~~Ls~~eL~~LE~~Le~~ 47 (69)
-++.+|.++.+.+...+..+..-...++..+||..|+..++.-
T Consensus 709 eei~kL~~E~~~l~~Ei~~L~~~t~~~lW~~DL~~l~~~y~k~ 751 (760)
T d1bjta_ 709 ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEF 751 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888877666667777888777666553
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.69 E-value=58 Score=16.11 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 036682 10 LKAKIDLLQKNQ 21 (69)
Q Consensus 10 l~~~~e~L~~~~ 21 (69)
++.+++.|...+
T Consensus 71 l~~~~~~L~~~l 82 (88)
T d1nkpa_ 71 LRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 10
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.11 E-value=59 Score=17.14 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=20.1
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHH
Q 036682 25 LGEDLESLSLKDIQQLEQQLDTALKH 50 (69)
Q Consensus 25 ~GedL~~Ls~~eL~~LE~~Le~~l~~ 50 (69)
||..-+.||.++|.+|-+.-.-+-..
T Consensus 1 Mg~~~s~l~p~~l~~L~~~T~fs~~e 26 (118)
T d1tuza_ 1 MAKERGLISPSDFAQLQKYMEYSTKK 26 (118)
T ss_dssp CCCCCSCSCHHHHHHHHHHHHHCCCC
T ss_pred CCcccCCCCHHHHHHHHHHcCCCHHH
Confidence 68888889999999998776544333
Done!