Query 036687
Match_columns 432
No_of_seqs 165 out of 1215
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 07:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036687.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036687hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q9ja1 c.43.1.2 (A:1-175) Pol 98.2 5.8E-06 4.2E-10 69.5 12.0 136 34-185 7-144 (175)
2 d1q9ja2 c.43.1.2 (A:181-418) P 97.8 0.00014 1E-08 63.7 14.4 141 241-386 31-174 (238)
3 d1l5aa1 c.43.1.2 (A:1-174) Vib 97.8 1.8E-05 1.3E-09 66.2 7.3 122 50-185 23-146 (174)
4 d1l5aa2 c.43.1.2 (A:175-424) V 84.0 2.1 0.00016 35.7 9.1 99 240-349 33-131 (250)
5 d1q23a_ c.43.1.1 (A:) Chloramp 71.6 0.98 7.1E-05 37.6 2.7 44 141-185 163-209 (214)
6 d3claa_ c.43.1.1 (A:) Chloramp 71.2 1 7.4E-05 37.5 2.7 29 157-185 181-209 (213)
7 d1b5sa_ c.43.1.1 (A:) Dihydrol 47.2 4.4 0.00032 34.1 2.5 29 157-185 207-235 (242)
8 d1dpba_ c.43.1.1 (A:) Dihydrol 44.5 5.6 0.00041 33.4 2.7 27 159-185 210-236 (243)
9 d1scza_ c.43.1.1 (A:) Dihydrol 44.0 5.8 0.00042 33.1 2.7 29 157-185 196-224 (233)
10 d1s3si_ d.15.1.2 (I:) p47 {Rat 26.5 6.2 0.00045 24.1 -0.1 32 140-172 15-47 (50)
11 d1xl7a1 c.43.1.3 (A:11-392) Pe 24.1 21 0.0015 31.9 3.1 36 147-184 301-336 (382)
12 d1nm8a1 c.43.1.3 (A:9-385) Car 22.6 28 0.0021 30.9 3.7 37 147-185 298-334 (377)
No 1
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.21 E-value=5.8e-06 Score=69.46 Aligned_cols=136 Identities=18% Similarity=0.060 Sum_probs=84.3
Q ss_pred eeeCCccccccccc-cceeEEEEEeCCCcHHHHHHHHHhhcccccCCCeeEeeCCCCCCceEEEecCC-CeEEEEEEccC
Q 036687 34 SLYLSNLDDQKFLR-FSIKYLYLYKKSISLDFLKYSLSKVLVEYYPLAGRLRTSSEDDFKLQVDCNGE-GAVFAAAFMDI 111 (432)
Q Consensus 34 ~~~Ls~lD~~~~~~-~~~~~~~~f~~~~~~~~L~~sL~~~L~~~p~LaGrl~~~~~~~g~~~i~~~~~-gv~f~~a~~~~ 111 (432)
.-+|+..++.+... .++...+-+++..+.+.|++++..+++++|.|..+++..++ |.+....... -..+...+.
T Consensus 7 ~r~l~~~e~~~~~~~~~~~~~~~l~g~ld~~~l~~A~~~lv~rh~~LRt~f~~~~~--~~~~~~~~~~~~~~~~~~d~-- 82 (175)
T d1q9ja1 7 IRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSD--GGWNLVADDLLHSGICVIDG-- 82 (175)
T ss_dssp EEECCHHHHHHHHTTCEEEEEEEEESCCCHHHHHHHHHHHHHHCGGGSEEEEECTT--SSEEEEECCSSSCCCEEEC---
T ss_pred HHHhCHHhhhcccCceEEEEEEEEcCCCCHHHHHHHHHHHHHhchhheEEEEEeCC--eeEEEEECCCCCccEEEEEc--
Confidence 45588888865422 34566666778999999999999999999999999988764 4443332221 111111111
Q ss_pred ChhhhhCCCCCchhhhhcccccccccCCCCCCCeEEEEEeeccCceeEecceeeeccchhhHHHHHHHHhhhhC
Q 036687 112 SSEDFLQLSRKPNRSWRKLLYRVEAHSFLQVPPLVVQVTNLRCGGMILCTAINHCLCDGIGTSQFLHAWAHVTT 185 (432)
Q Consensus 112 ~~~~l~~~~~~~~~~~~~l~p~~~~~~~~~~Pll~vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 185 (432)
+-.+... .....+.. -..+.|+..+.+. ..+++..|.+.+||.++||.|+..|++.+.+.+.
T Consensus 83 ~~~~~~~--------~~~~~~~~---l~~~~~l~~~~i~-~~~~~~~l~l~~HH~i~Dg~S~~~ll~el~~~Y~ 144 (175)
T d1q9ja1 83 TAATNGS--------PSGNAELR---LDQSVSLLHLQLI-LREGGAELTLYLHHCMADGHHGAVLVDELFSRYT 144 (175)
T ss_dssp -------------------CCCC---CCTTTCSEEEEEE-CCSSSCEEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred ccchhHH--------HHhhcccC---ccCCCCeEEEEEE-ecCCeEEEEEEccccccCHhHHHHHHHHHHHHHH
Confidence 0000000 00000110 0124566666665 4456788899999999999999999999877654
No 2
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.85 E-value=0.00014 Score=63.74 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=98.8
Q ss_pred ceeEEEEeCHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccCcCCCCCCCCcccccccc
Q 036687 241 LVPASLTFTPSQILHLKRQCVPSLKCTTFEALASHTWRSWVRSLDLLPDSLNVKLLFSVNVRKKLNPEMPEGYYGNGFVL 320 (432)
Q Consensus 241 ~~~~~~~~~~~~l~~Lk~~~~~~~~~S~~d~l~A~lW~~~~~ar~~~~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~ 320 (432)
.....+.++++..++|++.|++.+ +|.++++.|.+-..+.+-.. .++....+.++++.|+++.|+...+.+||.+..
T Consensus 31 ~~~~~~~ls~~~t~~l~~~~~~~~-~T~~~~l~aa~~~~l~~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~G~~~~~ 107 (238)
T d1q9ja2 31 VPVTRLWLSKQQTSDLMAFGREHR-LSLNAVVAAAILLTEWQLRN--TPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGA 107 (238)
T ss_dssp CCEEEECCCHHHHHHHHHHHTTTT-CCHHHHHHHHHHHHHHHHHT--CSSCCEEEEEEEETTTTSSSCCCTTTBSCCEEE
T ss_pred CceEEEEeCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhC--CCCccccccccccccccccCccccceeEeeeee
Confidence 445677999999999999999885 99999999975444444333 345668899999999999888888889999888
Q ss_pred eecccchhhhccccHHHHHHHHHHHHHhc-CHHHHH-HHHHHhhhcC-CCCCCCCcEEEeecCCCCCCc
Q 036687 321 ACAQTSVNDLVNSNLYHTIKLVQQAKASL-TDDYVR-SMVDLLEDKS-YKTDLSSSLVISQWSKLGLED 386 (432)
Q Consensus 321 ~~~~~~~~~l~~~~l~~~A~~ir~~i~~~-~~~~v~-~~~~~~~~~~-~~p~~~~~~~~ssw~~~~~y~ 386 (432)
+...+.++. +.++.++++.+++.+... ..+... ..+....... ..+.+...+.++|+..++...
T Consensus 108 ~~~r~~~~~--~~~~~~l~~~v~~~l~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~ 174 (238)
T d1q9ja2 108 ASYLAEIGP--NTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMR 174 (238)
T ss_dssp EEEEECCCS--SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGGGGGCCCSSSCCCEEEECCCCCCSCC
T ss_pred EEEEEecCC--CCCHHHHHHHHHHHHHHHHhcccccHHHHhhhhhcccCCccCCceeeeeccccccccc
Confidence 766665432 578999999999988654 222211 1111111111 223456778999987776543
No 3
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=97.80 E-value=1.8e-05 Score=66.24 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=78.8
Q ss_pred eeEEEEEeCCCcHHHHHHHHHhhcccccCCCeeEeeCCCCCCceEEEecCCCeEEEEEEccCChhhhhCCCCCchhhhhc
Q 036687 50 IKYLYLYKKSISLDFLKYSLSKVLVEYYPLAGRLRTSSEDDFKLQVDCNGEGAVFAAAFMDISSEDFLQLSRKPNRSWRK 129 (432)
Q Consensus 50 ~~~~~~f~~~~~~~~L~~sL~~~L~~~p~LaGrl~~~~~~~g~~~i~~~~~gv~f~~a~~~~~~~~l~~~~~~~~~~~~~ 129 (432)
+...+-+++..+.+.|++|+.+++.+.|.|--++..++ |.. ...-...+.+. ++.. ...+......
T Consensus 23 i~~~~~i~g~ld~~~l~~A~~~l~~rh~~LRt~f~~~~---~~~-~~~~~~~~~~~---------~~~~-~~~~~~~~~~ 88 (174)
T d1l5aa1 23 VAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQG---ELY-WHPFSPPIDYQ---------DLSI-HLEAEPLAWR 88 (174)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCGGGGEEECTTC---CEE-ECSSCCCCEEE---------ECTT-CTTHHHHHHH
T ss_pred ccEEEEEcCCCCHHHHHHHHHHHHHhCchheEEEeccC---cEE-EEEEeeceeeE---------eccc-ccchHHHHHH
Confidence 55666667899999999999999999999987776543 221 11111222221 1111 0001000000
Q ss_pred cccc--ccccCCCCCCCeEEEEEeeccCceeEecceeeeccchhhHHHHHHHHhhhhC
Q 036687 130 LLYR--VEAHSFLQVPPLVVQVTNLRCGGMILCTAINHCLCDGIGTSQFLHAWAHVTT 185 (432)
Q Consensus 130 l~p~--~~~~~~~~~Pll~vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 185 (432)
.+.. ....+....|++.+.+-...+|...+.+.+||.++||.|+..|++.++++++
T Consensus 89 ~~~~~~~~~~dl~~~pl~r~~l~~~~~~~~~l~~~~hHii~Dg~S~~~l~~el~~~Y~ 146 (174)
T d1l5aa1 89 QIEQDLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQ 146 (174)
T ss_dssp HHHHHHTSCCCCBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccccCCCcEEEEEEEeCCCceEEeeecccEEEcHhHHHHHHHHHHHHHH
Confidence 0000 0112345678999888777788889999999999999999999999988875
No 4
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Probab=83.97 E-value=2.1 Score=35.74 Aligned_cols=99 Identities=15% Similarity=-0.060 Sum_probs=67.0
Q ss_pred CceeEEEEeCHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHhhcCCCCCCCeEEEEEEecccCcCCCCCCCCccccccc
Q 036687 240 PLVPASLTFTPSQILHLKRQCVPSLKCTTFEALASHTWRSWVRSLDLLPDSLNVKLLFSVNVRKKLNPEMPEGYYGNGFV 319 (432)
Q Consensus 240 ~~~~~~~~~~~~~l~~Lk~~~~~~~~~S~~d~l~A~lW~~~~~ar~~~~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~ 319 (432)
......+.++++..++|++.|+..+ +|.+.++.|. |..+.+ +. . .....+.++++.|..- . -.+.+|.++.
T Consensus 33 ~~~~~~~~l~~~~~~~l~~~a~~~~-~s~~~~l~aa-~~~~l~-~~--~-~~~~vig~~~~~R~~~--~-~~~~~G~~~n 103 (250)
T d1l5aa2 33 HAVSLSYTLNSQLNHLLLKLANANQ-IGWPDALVAL-CALYLE-SA--E-PDAPWLWLPFMNRWGS--V-AANVPGLMVN 103 (250)
T ss_dssp CEEEEEEECCHHHHHHHHHHHHHTT-CCHHHHHHHH-HHHHHH-HH--S-TTCCEEEEEECCCTTS--G-GGGSCSCCCE
T ss_pred CceEEEEEECHHHHHHHHHHHHhcC-CCHHHHHHHH-HHHHhh-hh--c-cceeeccceecCCCCh--h-hhhCeEeEEe
Confidence 3566778899999999999988764 8999988886 665543 42 2 3345689999988532 2 2455666654
Q ss_pred ceecccchhhhccccHHHHHHHHHHHHHhc
Q 036687 320 LACAQTSVNDLVNSNLYHTIKLVQQAKASL 349 (432)
Q Consensus 320 ~~~~~~~~~~l~~~~l~~~A~~ir~~i~~~ 349 (432)
.....+..+ .+.++.++.+.+++.+...
T Consensus 104 ~lP~r~~~~--~~~t~~~ll~~v~~~~~~~ 131 (250)
T d1l5aa2 104 SLPLLRLSA--QQTSLGNYLKQSGQAIRSL 131 (250)
T ss_dssp EEEEECCCC--TTCBHHHHHHHHHHHHHHH
T ss_pred eeeEEEEeC--CCCCHHHHHHHHHHHHHHh
Confidence 443333322 1467888888888887654
No 5
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=71.63 E-value=0.98 Score=37.65 Aligned_cols=44 Identities=18% Similarity=0.383 Sum_probs=31.9
Q ss_pred CCCCeEE-EEEeeccCc--eeEecceeeeccchhhHHHHHHHHhhhhC
Q 036687 141 QVPPLVV-QVTNLRCGG--MILCTAINHCLCDGIGTSQFLHAWAHVTT 185 (432)
Q Consensus 141 ~~Pll~v-qvt~f~~GG--~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 185 (432)
..|.+.+ |+. -.+|. +-|++++||.+.||.-...|++.+.+.+.
T Consensus 163 ~vpii~~Gk~~-~~~~r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le 209 (214)
T d1q23a_ 163 FAPVFTMGKYY-TQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD 209 (214)
T ss_dssp CSCEEEECCCE-EETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eeeEEEecceE-EECCEEEEEEEEEecccccchHHHHHHHHHHHHHHh
Confidence 3565543 332 23333 45899999999999999999999988753
No 6
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=71.22 E-value=1 Score=37.50 Aligned_cols=29 Identities=21% Similarity=0.614 Sum_probs=26.7
Q ss_pred eeEecceeeeccchhhHHHHHHHHhhhhC
Q 036687 157 MILCTAINHCLCDGIGTSQFLHAWAHVTT 185 (432)
Q Consensus 157 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 185 (432)
+-|++++||.+.||.-...|++.+.+.+-
T Consensus 181 m~lsls~dHrviDG~~aa~Fl~~lk~~le 209 (213)
T d3claa_ 181 LPLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecccccccHHHHHHHHHHHHHHh
Confidence 56899999999999999999999988876
No 7
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=47.21 E-value=4.4 Score=34.08 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=26.3
Q ss_pred eeEecceeeeccchhhHHHHHHHHhhhhC
Q 036687 157 MILCTAINHCLCDGIGTSQFLHAWAHVTT 185 (432)
Q Consensus 157 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 185 (432)
+-|++++.|-+.||.-...|++.|.+..-
T Consensus 207 m~lslt~DHRviDGa~aa~Fl~~l~~~lE 235 (242)
T d1b5sa_ 207 LALSLSFDHRMIDGATAQKALNHIKRLLS 235 (242)
T ss_dssp EEEEEEECTTTSCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcchhChHHHHHHHHHHHHHHh
Confidence 44899999999999999999999998765
No 8
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=44.45 E-value=5.6 Score=33.43 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=25.4
Q ss_pred EecceeeeccchhhHHHHHHHHhhhhC
Q 036687 159 LCTAINHCLCDGIGTSQFLHAWAHVTT 185 (432)
Q Consensus 159 l~~~~~H~v~Dg~~~~~fl~~wa~~~r 185 (432)
|++++.|-+.||.....|++.|.+...
T Consensus 210 ltls~DHRvidGa~aa~FL~~l~~~lE 236 (243)
T d1dpba_ 210 LSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEeecccccHHHHHHHHHHHHHHHh
Confidence 899999999999999999999998765
No 9
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=44.01 E-value=5.8 Score=33.10 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=26.7
Q ss_pred eeEecceeeeccchhhHHHHHHHHhhhhC
Q 036687 157 MILCTAINHCLCDGIGTSQFLHAWAHVTT 185 (432)
Q Consensus 157 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 185 (432)
+.|++++.|-+.||.-...|++.|.+..-
T Consensus 196 ~~lsls~DHRviDGa~aa~Fl~~l~~~lE 224 (233)
T d1scza_ 196 MYLALSYDHRLIDGRESVGFLVTIKELLE 224 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEhhcchhccHHHHHHHHHHHHHHh
Confidence 56999999999999999999999998765
No 10
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.48 E-value=6.2 Score=24.12 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=7.7
Q ss_pred CCCCCeEEEEEeeccCc-eeEecceeeeccchhh
Q 036687 140 LQVPPLVVQVTNLRCGG-MILCTAINHCLCDGIG 172 (432)
Q Consensus 140 ~~~Pll~vqvt~f~~GG-~~l~~~~~H~v~Dg~~ 172 (432)
+..|...+|+- +.||. ++--|..+|.|.|-..
T Consensus 15 ~s~PtT~iQiR-L~dG~R~v~rFN~~Htv~dir~ 47 (50)
T d1s3si_ 15 EAEPTTNIQIR-LADGGRLVQKFNHSHRISDIRL 47 (50)
T ss_dssp ------------------------CCCCHHHHHH
T ss_pred CCCCceEEEEE-eCCCCEEEEEccCccCHHHHHH
Confidence 56789999995 99974 5666777899988554
No 11
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.10 E-value=21 Score=31.86 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=29.8
Q ss_pred EEEEeeccCceeEecceeeeccchhhHHHHHHHHhhhh
Q 036687 147 VQVTNLRCGGMILCTAINHCLCDGIGTSQFLHAWAHVT 184 (432)
Q Consensus 147 vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~ 184 (432)
+|+..+++| ..|+.+-|+.+||..+..++....+..
T Consensus 301 ~q~IV~~nG--~~G~~~EHS~~DG~~~~~l~~~i~~~~ 336 (382)
T d1xl7a1 301 YNLISFANG--IFGCCCDHAPYDAMVMVNIAHYVDERV 336 (382)
T ss_dssp CEEEECTTS--CEEEEECSSSCCTHHHHHHHHHHHHHH
T ss_pred eeEEEeCCC--CEEEEeeCCchhHHHHHHHHHHHHHHH
Confidence 677778998 458999999999999999998765543
No 12
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.60 E-value=28 Score=30.85 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=30.5
Q ss_pred EEEEeeccCceeEecceeeeccchhhHHHHHHHHhhhhC
Q 036687 147 VQVTNLRCGGMILCTAINHCLCDGIGTSQFLHAWAHVTT 185 (432)
Q Consensus 147 vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 185 (432)
+|+..+++| ..|+.+=|+.+||..+..+++...+...
T Consensus 298 ~q~IV~~nG--~~g~~~EHS~~DG~~v~~~~~~v~~~~~ 334 (377)
T d1nm8a1 298 LQFIVAEDG--SCGLVYEHAAAEGPPIVTLLDYVIEYTK 334 (377)
T ss_dssp EEEEEETTS--CEEEEECTTSCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCC--CEEeeccCCcccHHHHHHHHHHHHHHhh
Confidence 777788988 3589999999999999999987665544
Done!