BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036688
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD DLQLERINVYYNEA+G +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VVRKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPT 221
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD DLQLERINVYYNEA+G +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VVRKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPT 221
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD DLQLERINVYYNEA+G +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VVRKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPT 221
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD DLQLERINVYYNEA+G +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VVRKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPT 221
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD DLQLERINVYYNEA+G +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VVRKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPT 221
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD DLQLERINVYYNEA+G +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VVRKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPT 221
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD DLQLERINVYYNEA+G +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEAAGNK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VVRKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPT 221
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD DLQLERINVYYNEA+G +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEAAGNK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VVRKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPT 221
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD DLQLERINVYYNEA+G +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEAAGNK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VVRKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPT 221
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 319 bits (818), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 146/223 (65%), Positives = 176/223 (78%), Gaps = 2/223 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MREI+HI GQCGNQIG+ FWE IC EHG+D G Y G +D+Q ER+NVY+NEAS G+
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGH--DDIQKERLNVYFNEASSGK 58
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPR++ +DLEPGT+D++R+ G +FRPDN++FGQS AGN WAKGHYTEGAEL+D+V+D
Sbjct: 59 WVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
V+R+EAE CD LQGFQ+ H ISKIREE+PDRMM TFSV PSPK SDT
Sbjct: 119 VIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VEPYNATLSVHQLVE++DE +DNEALYDIC RTLKL+ PS
Sbjct: 179 RVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPS 221
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 200 bits (508), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 200 bits (508), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 200 bits (508), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 200 bits (508), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 200 bits (508), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 199 bits (507), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
VRK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
MRE + I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
+RK A+ C LQGF V H + ++ +Y + + FS++P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 137/225 (60%), Gaps = 3/225 (1%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQ--LERINVYYNEASG 58
MRE++ I GQ G QIG+ WE+ EHG+ P G DG+ + E + +++E
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLE-DGLSKPKGGEEGFSTFFHETGY 59
Query: 59 GRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 118
G++VPRA+ +DLEP +D +R+GPY +F P+ + G+ A NN+A+GHYT G E++ V
Sbjct: 60 GKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDV 119
Query: 119 LDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVS 178
LD +RK A+ CD LQGF H + ++ EY + + F+V+P+P+VS
Sbjct: 120 LDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVS 179
Query: 179 DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
+VVEPYN L+ H +E+AD ++DNEA+YD+C R L + PS
Sbjct: 180 TSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPS 224
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 128/220 (58%), Gaps = 1/220 (0%)
Query: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
+REIL I GQCGNQI FW + EHG+ G + +G + V++++ G+
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLK-EGSNAAANSNMEVFFHKVRDGK 59
Query: 61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
YVPRAVL+DLEPG + I G Q+F + V GA NNWA+G+ EG ++ID +++
Sbjct: 60 YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMN 119
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
V+ E LQGF + H + ++R+ YP + + TFSV PSP +SD+
Sbjct: 120 VIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDS 179
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLS 220
VEPYNA L++ ++++NAD ++LDNEAL+ I L S
Sbjct: 180 AVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLNRS 219
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 138/225 (61%), Gaps = 6/225 (2%)
Query: 2 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRY 61
REI+ +Q GQCGNQIG +FW+ +C EHG+ P E +R +V++ +A Y
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGT--DRKDVFFYQADDEHY 60
Query: 62 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVL 119
+PRAVL+DLEP + SI + PY +++ P+N + GAGNNWA G +++G ++ + +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 120 DVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSP-KVS 178
D++ +EA+ D L+GF +CH + ++ + YP +++ T+SVFP+ ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 179 DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
D VV+PYN+ L++ +L +NAD +VLDN AL I L + PS
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPS 224
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 138/225 (61%), Gaps = 6/225 (2%)
Query: 2 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRY 61
REI+ +Q GQCGNQIG +FW+ +C EHG+ P E +R +V++ +A Y
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGT--DRKDVFFYQADDEHY 60
Query: 62 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVL 119
+PRAVL+DLEP + SI + PY +++ P+N + GAGNNWA G +++G ++ + +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 120 DVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSP-KVS 178
D++ +EA+ D L+GF +CH + ++ + YP +++ T+SVFP+ ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 179 DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
D VV+PYN+ L++ +L +NAD +VLDN AL I L + PS
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPS 224
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 2/215 (0%)
Query: 10 GQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDL-QLERINVYYNEASGGRYVPRAVLM 68
GQ GNQI + FW+ +C EHG+DP GV E+S G YVPRA+++
Sbjct: 12 GQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMV 71
Query: 69 DLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAEN 128
DLEP +D++++ G +F P N + GAG N+A G+ G E++ V+ + E +
Sbjct: 72 DLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDK 130
Query: 129 CDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNAT 188
CD + G V H I ++E+Y + +++ +V PSP+VS V EPYN
Sbjct: 131 CDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTV 190
Query: 189 LSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
+++ L +AD C++ DNEAL+D+ R + +P+
Sbjct: 191 FALNTLRRSADACLIFDNEALFDLAHRKWNIESPT 225
>pdb|2HW4|A Chain A, Crystal Structure Of Human Phosphohistidine Phosphatase
Length = 144
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 100 GNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH 139
G WA+ H A++ D V ++K+ +C+CL G ++ H
Sbjct: 65 GYKWAEYH----ADIYDKVSGDMQKQGCDCECLGGGRISH 100
>pdb|2AI6|A Chain A, Solution Structure Of Human Phosphohistidine Phosphatase 1
pdb|2OZW|A Chain A, Solution Structure Of Human Phosphohistidine Phosphatase 1
With Phosphate Ligand
pdb|2OZX|A Chain A, Solution Structure Of Human Phosphohistidine Phosphatase 1
In Phosphate Free Form
Length = 125
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 100 GNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH 139
G WA+ H A++ D V ++K+ +C+CL G ++ H
Sbjct: 46 GYKWAEYH----ADIYDKVSGDMQKQGCDCECLGGGRISH 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,919,363
Number of Sequences: 62578
Number of extensions: 283738
Number of successful extensions: 651
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 30
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)