Query 036688
Match_columns 223
No_of_seqs 150 out of 1343
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 8.9E-83 1.9E-87 544.3 19.5 221 1-223 1-221 (443)
2 PLN00221 tubulin alpha chain; 100.0 6.4E-69 1.4E-73 486.1 19.0 223 1-223 1-223 (450)
3 KOG1374 Gamma tubulin [Cytoske 100.0 4.7E-68 1E-72 454.4 18.2 220 1-223 2-224 (448)
4 PTZ00335 tubulin alpha chain; 100.0 7.8E-68 1.7E-72 478.8 19.8 223 1-223 1-223 (448)
5 PLN00220 tubulin beta chain; P 100.0 1.7E-66 3.6E-71 471.1 19.8 221 1-223 1-221 (447)
6 PLN00222 tubulin gamma chain; 100.0 6.4E-66 1.4E-70 466.7 19.9 220 1-223 2-224 (454)
7 PTZ00010 tubulin beta chain; P 100.0 1.9E-65 4.1E-70 463.5 19.9 221 1-223 1-221 (445)
8 cd02188 gamma_tubulin Gamma-tu 100.0 2.2E-65 4.7E-70 460.9 19.1 219 2-223 1-222 (431)
9 cd02186 alpha_tubulin The tubu 100.0 1E-64 2.3E-69 457.6 19.0 222 2-223 1-222 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 4.6E-64 1E-68 455.0 19.2 211 1-221 1-219 (465)
11 cd02187 beta_tubulin The tubul 100.0 1E-63 2.2E-68 450.4 21.0 220 2-223 1-220 (425)
12 cd02189 delta_tubulin The tubu 100.0 6.8E-62 1.5E-66 440.6 18.8 213 4-223 2-216 (446)
13 KOG1376 Alpha tubulin [Cytoske 100.0 2.1E-57 4.5E-62 387.5 9.4 222 1-223 1-222 (407)
14 PF00091 Tubulin: Tubulin/FtsZ 100.0 5.2E-57 1.1E-61 374.2 11.0 213 3-223 1-213 (216)
15 cd02190 epsilon_tubulin The tu 100.0 3.6E-55 7.9E-60 389.5 15.9 176 2-210 1-176 (379)
16 cd06059 Tubulin The tubulin su 100.0 2.6E-49 5.6E-54 353.1 17.1 180 3-223 1-180 (382)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 6.3E-46 1.4E-50 325.4 16.0 178 3-222 1-178 (328)
18 cd06060 misato Human Misato sh 100.0 3.8E-39 8.1E-44 293.1 17.6 197 2-207 1-229 (493)
19 smart00864 Tubulin Tubulin/Fts 100.0 3.1E-34 6.7E-39 233.8 10.2 159 51-219 3-166 (192)
20 KOG2530 Members of tubulin/Fts 100.0 1.3E-32 2.9E-37 240.6 12.3 199 1-205 1-283 (483)
21 KOG1375 Beta tubulin [Cytoskel 100.0 1.1E-32 2.3E-37 236.6 7.1 161 43-223 5-165 (369)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 4.4E-28 9.5E-33 213.7 16.3 175 1-214 1-177 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 1.6E-22 3.5E-27 175.2 13.4 166 4-220 3-168 (303)
24 cd02201 FtsZ_type1 FtsZ is a G 99.8 1.1E-20 2.3E-25 164.2 12.7 167 4-220 3-169 (304)
25 TIGR00065 ftsZ cell division p 99.8 2E-20 4.3E-25 164.8 13.9 160 4-219 20-184 (349)
26 PF14881 Tubulin_3: Tubulin do 99.8 4.5E-20 9.8E-25 148.5 11.2 121 85-206 18-153 (180)
27 PRK13018 cell division protein 99.8 3.8E-19 8.1E-24 157.6 13.5 161 4-220 31-196 (378)
28 PRK09330 cell division protein 99.8 3.7E-18 7.9E-23 151.5 12.3 162 3-219 15-181 (384)
29 PF10644 Misat_Tub_SegII: Misa 99.6 4.8E-16 1E-20 116.5 5.0 65 2-74 1-69 (115)
30 COG0206 FtsZ Cell division GTP 99.3 6.3E-11 1.4E-15 103.6 13.8 104 104-214 71-174 (338)
31 PF13809 Tubulin_2: Tubulin li 97.7 0.0011 2.3E-08 58.9 13.2 101 95-195 101-218 (345)
32 TIGR00824 EIIA-man PTS system, 80.3 8.8 0.00019 28.4 6.6 32 115-146 41-72 (116)
33 cd00006 PTS_IIA_man PTS_IIA, P 79.0 9.3 0.0002 28.3 6.4 45 115-163 40-84 (122)
34 PF03610 EIIA-man: PTS system 78.4 8.1 0.00018 28.3 5.9 31 115-145 40-70 (116)
35 PRK14484 phosphotransferase ma 74.5 3.7 8.1E-05 31.0 3.1 28 116-145 42-69 (124)
36 PF12953 DUF3842: Domain of un 71.8 5.3 0.00011 30.4 3.3 28 143-170 6-34 (131)
37 PTZ00010 tubulin beta chain; P 67.8 2.5 5.4E-05 38.9 1.1 69 4-72 135-206 (445)
38 PRK09461 ansA cytoplasmic aspa 66.5 28 0.00062 30.7 7.4 91 110-207 63-154 (335)
39 PF06908 DUF1273: Protein of u 63.1 22 0.00048 28.5 5.6 56 115-177 28-83 (177)
40 PRK13660 hypothetical protein; 61.5 50 0.0011 26.6 7.4 55 116-177 29-83 (182)
41 PF00710 Asparaginase: Asparag 57.0 62 0.0013 28.2 7.8 91 110-207 54-145 (313)
42 cd00411 Asparaginase Asparagin 56.9 48 0.001 29.1 7.1 91 110-207 60-152 (323)
43 cd00741 Lipase Lipase. Lipase 56.7 29 0.00062 26.4 5.1 52 106-161 2-53 (153)
44 TIGR02153 gatD_arch glutamyl-t 53.7 75 0.0016 29.0 8.0 90 111-207 121-211 (404)
45 PRK15088 PTS system mannose-sp 53.1 49 0.0011 29.1 6.5 32 115-146 42-73 (322)
46 COG1171 IlvA Threonine dehydra 51.0 1.2E+02 0.0025 27.2 8.5 75 136-215 178-273 (347)
47 smart00870 Asparaginase Aspara 49.6 92 0.002 27.3 7.7 64 111-178 58-121 (323)
48 PLN02847 triacylglycerol lipas 49.1 24 0.00052 33.8 4.1 62 105-170 224-287 (633)
49 PF03283 PAE: Pectinacetyleste 48.5 26 0.00056 31.4 4.1 51 107-163 132-183 (361)
50 TIGR02364 dha_pts dihydroxyace 44.4 27 0.00058 26.3 3.1 39 117-158 43-83 (125)
51 PF02879 PGM_PMM_II: Phosphogl 43.9 28 0.0006 24.7 3.0 28 132-159 19-46 (104)
52 TIGR00519 asnASE_I L-asparagin 43.7 84 0.0018 27.8 6.5 72 110-188 59-131 (336)
53 PLN02408 phospholipase A1 43.0 57 0.0012 29.3 5.4 63 113-179 179-243 (365)
54 PRK04183 glutamyl-tRNA(Gln) am 42.6 1.3E+02 0.0027 27.7 7.6 90 110-207 133-223 (419)
55 cd00519 Lipase_3 Lipase (class 42.4 35 0.00076 27.8 3.8 54 104-161 100-153 (229)
56 COG4053 Uncharacterized protei 40.2 62 0.0013 26.5 4.6 56 116-174 69-124 (244)
57 COG0572 Udk Uridine kinase [Nu 39.9 42 0.0009 27.9 3.8 27 137-164 9-35 (218)
58 PRK14318 glmM phosphoglucosami 38.3 1.8E+02 0.004 26.5 8.1 41 116-158 159-199 (448)
59 COG1109 {ManB} Phosphomannomut 37.5 2E+02 0.0044 26.5 8.3 90 114-208 158-250 (464)
60 cd05801 PGM_like3 This bacteri 35.8 94 0.002 29.2 5.9 45 114-158 189-234 (522)
61 COG2893 ManX Phosphotransferas 35.6 1.6E+02 0.0035 22.7 6.3 43 118-164 45-87 (143)
62 COG4474 Uncharacterized protei 34.5 1.9E+02 0.0042 23.1 6.5 56 115-175 24-81 (180)
63 PRK14317 glmM phosphoglucosami 34.1 2.4E+02 0.0052 26.0 8.2 45 114-158 168-212 (465)
64 PLN02371 phosphoglucosamine mu 33.1 1.6E+02 0.0035 28.1 7.1 28 131-158 260-287 (583)
65 TIGR00262 trpA tryptophan synt 32.9 2.7E+02 0.0059 23.5 7.8 40 120-162 154-198 (256)
66 TIGR01455 glmM phosphoglucosam 32.8 2.5E+02 0.0054 25.6 8.1 43 116-158 154-196 (443)
67 PF13508 Acetyltransf_7: Acety 32.7 62 0.0013 21.3 3.2 23 146-168 40-62 (79)
68 cd00598 GH18_chitinase-like Th 32.1 2.5E+02 0.0055 22.1 7.9 85 115-207 89-177 (210)
69 CHL00200 trpA tryptophan synth 31.6 2.6E+02 0.0057 23.8 7.5 49 120-171 158-211 (263)
70 cd03089 PMM_PGM The phosphoman 31.1 2.8E+02 0.0061 25.2 8.1 44 114-159 145-188 (443)
71 PF01764 Lipase_3: Lipase (cla 31.1 64 0.0014 23.7 3.3 54 105-163 36-91 (140)
72 PF01713 Smr: Smr domain; Int 30.6 1.7E+02 0.0037 19.7 5.7 50 118-170 11-66 (83)
73 PRK14315 glmM phosphoglucosami 30.1 2.9E+02 0.0063 25.2 8.1 43 116-158 158-200 (448)
74 PLN03013 cysteine synthase 29.7 80 0.0017 29.0 4.2 68 148-215 292-365 (429)
75 COG1929 Glycerate kinase [Carb 29.3 1.5E+02 0.0033 26.7 5.7 102 90-209 195-300 (378)
76 KOG3178 Hydroxyindole-O-methyl 29.1 58 0.0013 29.0 3.1 40 125-169 168-207 (342)
77 PF15232 DUF4585: Domain of un 29.1 46 0.001 22.8 1.9 30 62-91 6-38 (75)
78 PRK09542 manB phosphomannomuta 28.7 3.6E+02 0.0079 24.6 8.4 43 114-157 145-187 (445)
79 PRK14322 glmM phosphoglucosami 28.6 3E+02 0.0066 24.9 7.9 27 132-158 163-189 (429)
80 COG0031 CysK Cysteine synthase 28.4 1.5E+02 0.0033 25.9 5.5 98 101-215 149-253 (300)
81 cd03087 PGM_like1 This archaea 28.1 3E+02 0.0065 25.0 7.7 27 132-158 162-188 (439)
82 PRK15414 phosphomannomutase Cp 27.3 4.9E+02 0.011 23.9 9.5 44 115-159 152-195 (456)
83 cd02874 GH18_CFLE_spore_hydrol 27.0 3.6E+02 0.0077 23.1 7.7 88 116-206 89-177 (313)
84 cd02960 AGR Anterior Gradient 26.9 61 0.0013 24.6 2.5 22 58-79 76-97 (130)
85 PRK07564 phosphoglucomutase; V 26.7 3E+02 0.0065 26.0 7.7 27 132-158 224-250 (543)
86 COG2518 Pcm Protein-L-isoaspar 26.5 41 0.00089 27.8 1.6 18 142-159 78-95 (209)
87 COG0159 TrpA Tryptophan syntha 26.4 2.7E+02 0.0058 23.9 6.6 67 120-203 161-232 (265)
88 PF05970 PIF1: PIF1-like helic 26.3 2.2E+02 0.0047 25.3 6.4 30 132-164 20-49 (364)
89 PRK10887 glmM phosphoglucosami 24.4 4.2E+02 0.0091 24.1 8.0 27 132-158 169-195 (443)
90 PF09370 TIM-br_sig_trns: TIM- 24.2 46 0.001 28.5 1.6 32 117-156 2-33 (268)
91 PRK14324 glmM phosphoglucosami 24.0 4.3E+02 0.0093 24.1 8.0 45 114-158 155-199 (446)
92 PRK09932 glycerate kinase II; 24.0 1.6E+02 0.0035 26.7 5.0 70 88-158 193-262 (381)
93 PRK14323 glmM phosphoglucosami 23.8 4.1E+02 0.0089 24.1 7.8 42 114-158 156-197 (440)
94 PRK14321 glmM phosphoglucosami 23.7 4.3E+02 0.0092 24.2 7.9 41 115-158 149-189 (449)
95 cd05802 GlmM GlmM is a bacteri 23.6 4.3E+02 0.0094 23.9 7.9 43 115-158 151-193 (434)
96 COG3969 Predicted phosphoadeno 23.4 2.3E+02 0.0051 25.5 5.7 48 111-163 9-56 (407)
97 COG4427 Uncharacterized protei 23.3 1.1E+02 0.0024 26.5 3.6 34 117-163 6-39 (350)
98 smart00467 GS GS motif. Aa app 23.2 61 0.0013 18.1 1.4 9 142-150 11-19 (30)
99 PRK14319 glmM phosphoglucosami 23.2 4.2E+02 0.0092 24.0 7.8 27 132-158 160-186 (430)
100 KOG3010 Methyltransferase [Gen 23.1 37 0.00081 28.8 0.8 26 193-218 102-127 (261)
101 PRK14314 glmM phosphoglucosami 23.0 4.6E+02 0.0099 24.0 8.0 27 132-158 175-201 (450)
102 COG1086 Predicted nucleoside-d 22.9 69 0.0015 30.6 2.6 24 142-166 256-279 (588)
103 TIGR00045 glycerate kinase. Th 22.6 2.1E+02 0.0047 25.8 5.5 71 87-158 191-261 (375)
104 KOG1250 Threonine/serine dehyd 22.6 5.4E+02 0.012 23.7 7.9 79 137-218 219-315 (457)
105 COG3958 Transketolase, C-termi 22.2 1.8E+02 0.0039 25.5 4.7 42 121-171 236-280 (312)
106 cd01841 NnaC_like NnaC (CMP-Ne 22.0 1.3E+02 0.0029 22.8 3.8 39 152-190 79-123 (174)
107 PF08659 KR: KR domain; Inter 21.7 79 0.0017 24.8 2.4 23 141-164 5-27 (181)
108 PRK12483 threonine dehydratase 21.7 4.6E+02 0.01 24.8 7.8 76 137-215 190-283 (521)
109 COG0303 MoeA Molybdopterin bio 21.5 1.7E+02 0.0037 26.7 4.7 59 110-175 224-282 (404)
110 PTZ00489 glutamate 5-kinase; P 21.4 3.4E+02 0.0075 23.1 6.4 41 157-197 87-127 (264)
111 TIGR01732 tiny_TM_bacill conse 21.2 75 0.0016 17.1 1.4 12 142-153 1-12 (26)
112 cd05805 MPG1_transferase GTP-m 21.1 5.7E+02 0.012 23.2 8.2 26 132-157 166-191 (441)
113 PF13552 DUF4127: Protein of u 20.3 1.1E+02 0.0024 28.7 3.3 70 127-199 54-146 (497)
114 TIGR00520 asnASE_II L-asparagi 20.2 5E+02 0.011 23.1 7.4 63 111-178 86-148 (349)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=8.9e-83 Score=544.29 Aligned_cols=221 Identities=60% Similarity=1.158 Sum_probs=216.5
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS 80 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~ 80 (223)
||||||||+||||||||++||+++|+||||+++|.+++. .+.+.++.++||+|++.++|+||||+|||||++|+.+++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~--~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~ 78 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDS--SDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN 78 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCC--cccccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence 999999999999999999999999999999999998765 666778999999999999999999999999999999999
Q ss_pred CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhh
Q 036688 81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 160 (223)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~ 160 (223)
++|+.+|+|+|+++||+|+|||||+|+|+.|+++.+.++|.|||++|.||.||||+++||++||||||+|+.|+|+|+++
T Consensus 79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 161 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 161 y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
||||.+.+|+|+|.++.++++|||||++|++++|.|+||+++++||+||++||.+.|+|++|+
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~ 221 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPS 221 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=6.4e-69 Score=486.11 Aligned_cols=223 Identities=46% Similarity=0.891 Sum_probs=209.9
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS 80 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~ 80 (223)
|||||+||+||||||||.+||+++|+||+++++|++..+...+...++.++||+|..+++|+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999997654311112345778999999999999999999999999999999
Q ss_pred CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhh
Q 036688 81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 160 (223)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~ 160 (223)
++++++|+|++++++++|+|||||+||++.|+++.++++|+||+++|+||++|||+++||++||||||+|++++|+|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 161 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 161 y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
||++.+.+++|+|++..++.++++||++|++++|.+++|+++++||++|+++|.+.+++++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~ 223 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPT 223 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCC
Confidence 999999999999997678899999999999999999999999999999999999999999885
No 3
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=4.7e-68 Score=454.38 Aligned_cols=220 Identities=43% Similarity=0.877 Sum_probs=207.7
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS 80 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~ 80 (223)
||||||||+||||||||.+||+.+|+||||.++|..... .+...++-++||++..++.|+||||+||+||+||+.+..
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~--~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~ 79 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDF--ATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILS 79 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccch--hhhCccccccceeeccCCccccceeeeccchHHHhcccc
Confidence 589999999999999999999999999999999997654 455667889999999999999999999999999999999
Q ss_pred CCCcccccCCceeecc--CCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 81 GPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 81 ~~~~~l~~~~~~~~~~--~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
++|+.+|+|+|+...+ .|+|||||.||- .|++..|+|+|.|+|++|.||+|+||+++||++||||||+||.++|+|+
T Consensus 80 ~~~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~ 158 (448)
T KOG1374|consen 80 SPYSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLN 158 (448)
T ss_pred chhhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHH
Confidence 9999999999987754 479999999985 5999999999999999999999999999999999999999999999999
Q ss_pred hhcCCceeEEEeccCCC-CCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 159 EEYPDRMMMTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 159 ~~y~~~~~~~~~v~P~~-~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
|+||||.+.+++|||.. ..+|.+|||||++|+|++|.+.+|+++++||+||.+||..+++|++|+
T Consensus 159 drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~pt 224 (448)
T KOG1374|consen 159 DRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPT 224 (448)
T ss_pred HhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCC
Confidence 99999999999999985 367899999999999999999999999999999999999999999996
No 4
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=7.8e-68 Score=478.79 Aligned_cols=223 Identities=46% Similarity=0.913 Sum_probs=209.3
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS 80 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~ 80 (223)
|||||+||+||||||||.+||+++|+||+++++|.+..+...+...++.++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999997754311112345778999999999999999999999999999999
Q ss_pred CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhh
Q 036688 81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 160 (223)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~ 160 (223)
++++.+|+|++++++++|+|||||+||++.|+++.|+++|+|||++|+||++|||+++||++||||||+|++++|+|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 161 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 161 y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
||++++++++|+|++..++.++++||++|+|++|.+++|+++++||++|+++|.+.+++++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~ 223 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPT 223 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCC
Confidence 999999999999997667899999999999999999999999999999999999999988774
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.7e-66 Score=471.12 Aligned_cols=221 Identities=95% Similarity=1.557 Sum_probs=210.3
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS 80 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~ 80 (223)
|||||+||+||||||||.+||+++++||+++++|.+..+ .+...+++++||+|.++++|+||||+||+||++|++++.
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~--~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~ 78 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGD--SDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCC--cccccccccceeccCCCCcccceeEecCCcHHHHHHHhc
Confidence 999999999999999999999999999999999887654 333345778999999999999999999999999999999
Q ss_pred CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhh
Q 036688 81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 160 (223)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~ 160 (223)
++++.+|+|++++++++|+|||||+|||+.|+++.++++|+||+++|+||++|||+++||++||||||+|++++++|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~ 158 (447)
T PLN00220 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (447)
T ss_pred CccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 161 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 161 y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
||++.+++++|+|++..++.++++||++|++++|.+++|+++++||++|+++|.+.+++++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~s 221 (447)
T PLN00220 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPS 221 (447)
T ss_pred ccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCC
Confidence 999999999999997778999999999999999999999999999999999999999998874
No 6
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=6.4e-66 Score=466.69 Aligned_cols=220 Identities=41% Similarity=0.815 Sum_probs=205.9
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS 80 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~ 80 (223)
|||||+||+||||||||.+||+++++||+++++|.+..+ .+...++.++||+|+..++|+||||+||+||++|++++.
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~--~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~ 79 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDF--ATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQN 79 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCc--cccccccccceeEEcCCCcccceeeecCCCcchhhhhcc
Confidence 599999999999999999999999999999999987543 233346778999999999999999999999999999999
Q ss_pred CCCcccccCCceeeccC--CCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 81 GPYGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 81 ~~~~~l~~~~~~~~~~~--~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
++++.+|+|++++++++ |+|||||+||+ .|++..++++|+||+++|.||++|||+++||++||||||+|++++|+|+
T Consensus 80 ~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~ 158 (454)
T PLN00222 80 SEYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALN 158 (454)
T ss_pred CccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHH
Confidence 88999999999999996 69999999965 7999999999999999999999999999999999999999999999999
Q ss_pred hhcCCceeEEEeccCCCC-CCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 159 EEYPDRMMMTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 159 ~~y~~~~~~~~~v~P~~~-~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
|+||++.+++++|+|++. .++.++++||++|++++|.+++|+++++||+||+++|.+++++++|+
T Consensus 159 d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~ 224 (454)
T PLN00222 159 DRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPT 224 (454)
T ss_pred hhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCC
Confidence 999999999999999863 46788999999999999999999999999999999999999999885
No 7
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.9e-65 Score=463.50 Aligned_cols=221 Identities=90% Similarity=1.477 Sum_probs=210.2
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS 80 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~ 80 (223)
|||||+||+||||||||.+||+++++||+++++|.+..+ ++...++.++||+|+..++|+||||+||+||++|+.++.
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~--~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~ 78 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGD--SDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRA 78 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCC--CcccccccceeecccCCCceEEeeeeccCChhhhhhhcc
Confidence 999999999999999999999999999999999987544 333345778999999999999999999999999999999
Q ss_pred CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhh
Q 036688 81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 160 (223)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~ 160 (223)
++++.+|+|++++++++|+|||||+||++.|+++.++++|+||+++|+||++|||+++||++||||||+|++++|+|+|+
T Consensus 79 ~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 79 GPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 161 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 161 y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
||++.+.+++|+|++..++.++++||++|++++|.+++|++++|||++|+++|.+++++++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~ 221 (445)
T PTZ00010 159 YPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPT 221 (445)
T ss_pred CCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCC
Confidence 999999999999997778899999999999999999999999999999999999999999885
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=2.2e-65 Score=460.89 Aligned_cols=219 Identities=44% Similarity=0.891 Sum_probs=205.2
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCC
Q 036688 2 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSG 81 (223)
Q Consensus 2 ~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~ 81 (223)
||||+||+||||||||.+||+++++||+++++|.+.++ .+...+..++||+|+++++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~--~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~ 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDF--ATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCC--ccccccccceeEEECCCCccCCcceeccCCcchhhhhhcC
Confidence 79999999999999999999999999999999987543 2333567789999999999999999999999999999999
Q ss_pred CCcccccCCceeeccC--CCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHh
Q 036688 82 PYGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 159 (223)
Q Consensus 82 ~~~~l~~~~~~~~~~~--~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~ 159 (223)
+++.+|+|++++++++ |+|||||+||+ .|++..++++|+||+++|+||++|||+++||++||||||+|++++|+|+|
T Consensus 79 ~~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d 157 (431)
T cd02188 79 EYRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLND 157 (431)
T ss_pred ccccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHh
Confidence 8889999999999998 99999999965 79999999999999999999999999999999999999999999999999
Q ss_pred hcCCceeEEEeccCCCCC-CcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 160 EYPDRMMMTFSVFPSPKV-SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 160 ~y~~~~~~~~~v~P~~~~-~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
+||++.+++++|+|++.. ++.++++||++|++++|.+++|+++++||++|+++|.+.+++++|+
T Consensus 158 ~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~ 222 (431)
T cd02188 158 RYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPT 222 (431)
T ss_pred HcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCC
Confidence 999999999999998654 4778999999999999999999999999999999999999998875
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1e-64 Score=457.64 Aligned_cols=222 Identities=47% Similarity=0.904 Sum_probs=208.0
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCC
Q 036688 2 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSG 81 (223)
Q Consensus 2 ~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~ 81 (223)
||||+||+||||||||.+||+++++||+++++|.+..+...+...+..++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999999977543111123467889999999999999999999999999999988
Q ss_pred CCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhc
Q 036688 82 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 161 (223)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y 161 (223)
+++.+|++++++.+++|+|||||+||++.|+++.++++|+||+++|+||++|||+++||++||||||+|+.++|+|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 162 PDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 162 ~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
|++++++++|+|+...++.++++||++|++++|.+++|+++++||++|+++|.+++++++|+
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~ 222 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPT 222 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCC
Confidence 99999999999997667889999999999999999999999999999999999999998774
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=4.6e-64 Score=455.04 Aligned_cols=211 Identities=41% Similarity=0.770 Sum_probs=197.8
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcC-CCCCCcccCCCccccccccccceeecCC-----CC--cccceeEEecCCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHG-VDPTGKYRGDGVEDLQLERINVYYNEAS-----GG--RYVPRAVLMDLEP 72 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~-i~~~~~~~~~~~~~~~~~~~~~~f~e~~-----~~--~~~pR~l~vD~e~ 72 (223)
|||||+||+||||||||.+||+++|+||+ ++++|.+ +++.++||++.. .+ +|+||||+||+||
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~---------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep 71 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRPGKENLKARAVLVDMEE 71 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc---------cccccceecccccccccCCCccccCcccccCCCc
Confidence 99999999999999999999999999999 7887764 245689998532 23 4999999999999
Q ss_pred CcccCcCCCCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHH
Q 036688 73 GTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL 152 (223)
Q Consensus 73 ~~i~~i~~~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~ 152 (223)
++|++++.++++.+|+|++++++++|+||||++||+..|++..|+++|+||+++|+||.+|||+++||++||||||+|+.
T Consensus 72 ~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ 151 (465)
T PTZ00387 72 GVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTR 151 (465)
T ss_pred cHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCC
Q 036688 153 LISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLST 221 (223)
Q Consensus 153 lle~l~~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~ 221 (223)
++|.|+|+||++.+++++|+|+ ..++.+++|||++|++++|.+++|+++++||++|+++|.+.+++++
T Consensus 152 lle~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~ 219 (465)
T PTZ00387 152 ILGMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKK 219 (465)
T ss_pred HHHHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccc
Confidence 9999999999999999999998 4578899999999999999999999999999999999999888873
No 11
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1e-63 Score=450.42 Aligned_cols=220 Identities=87% Similarity=1.445 Sum_probs=207.3
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCC
Q 036688 2 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSG 81 (223)
Q Consensus 2 ~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~ 81 (223)
||||+||+||||||||.+||+++++||+++++|.+..+ .+...+..++||+|.++++|+||||+||+||++|++++.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~--~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~ 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGD--SDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCC--ccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcC
Confidence 79999999999999999999999999999999876543 3323356789999999999999999999999999999988
Q ss_pred CCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhc
Q 036688 82 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 161 (223)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y 161 (223)
+++.+|+|++++.+++|+|||||+||++.|+++.++++|+||+++|+||++|||+++||++||||||+|++++|+|+|+|
T Consensus 79 ~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y 158 (425)
T cd02187 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 158 (425)
T ss_pred cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 162 PDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 162 ~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
|++.+++++|+|+...++.++++||++|+|++|.+++|++++|||++|+++|.+++++++|+
T Consensus 159 ~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~ 220 (425)
T cd02187 159 PDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPT 220 (425)
T ss_pred CCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCC
Confidence 99999999999997666899999999999999999999999999999999999999988874
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=6.8e-62 Score=440.65 Aligned_cols=213 Identities=35% Similarity=0.720 Sum_probs=200.2
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCCCC
Q 036688 4 ILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPY 83 (223)
Q Consensus 4 ii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~ 83 (223)
||+||+||||||||.+||+++++||+++++|.+. ...+..++||.|..+++|+||||+||+||++|++++.+++
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~------~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~ 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK------YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc------ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC
Confidence 7999999999999999999999999999887652 1235678999999999999999999999999999988654
Q ss_pred c--ccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhc
Q 036688 84 G--QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 161 (223)
Q Consensus 84 ~--~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y 161 (223)
+ ++|+|++++.+++|+|||||+||++.|+++.|+++|+|||++|+||+++||+++||++||||||+|++++|+|+|+|
T Consensus 76 ~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y 155 (446)
T cd02189 76 GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEY 155 (446)
T ss_pred CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 3 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 162 PDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 162 ~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
|++.+++++|+|+. .++.++++||++|++++|.+++|+++++||++|+++|.+.+++++|+
T Consensus 156 ~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~ 216 (446)
T cd02189 156 PESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVS 216 (446)
T ss_pred CccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCC
Confidence 99999999999974 68999999999999999999999999999999999999999998874
No 13
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=2.1e-57 Score=387.50 Aligned_cols=222 Identities=47% Similarity=0.899 Sum_probs=211.8
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS 80 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~ 80 (223)
|||||+|++||+|.|||+++|+++|.||||+++|..+.+.......+.+++||+++..++++||++|||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 9999999999999999999999999999999999987651111233477899999999999999999999999 999999
Q ss_pred CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhh
Q 036688 81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 160 (223)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~ 160 (223)
++|+.+|||+++++|+++++||+|+|+|+.|+|+++..+++||+.++.|..+|||.++|+++||||||+++.++|++..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 161 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 161 y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
|+||..+.++++|.+..++.+++|||++|+.+...+++|+++++||++.+++|++++.|+.|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPt 222 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPT 222 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 14
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=5.2e-57 Score=374.17 Aligned_cols=213 Identities=49% Similarity=0.969 Sum_probs=199.9
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCCC
Q 036688 3 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP 82 (223)
Q Consensus 3 Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 82 (223)
|||+||+||||||||.+||++++.||+++++.. ......+.++||++...++|+||+|+||+|++++++++..+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~------~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~ 74 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSK------SQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASP 74 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSS------SSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccc------cccccccccceeeeccccccccccccccccccccccccccc
Confidence 899999999999999999999999999998722 23345677899999999999999999999999999998887
Q ss_pred CcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcC
Q 036688 83 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 162 (223)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~ 162 (223)
.+.+|++++++.+++|+++||+.|++..|+++.++++++||+++|+||.+++|++++|++||||||+++.+++.|+++||
T Consensus 75 ~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~ 154 (216)
T PF00091_consen 75 KRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYP 154 (216)
T ss_dssp ETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTST
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 163 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 163 ~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
++++++++|+|+ .. +.++++||++++|++|.+++|++++|||++|+++|.+++++++|+
T Consensus 155 ~~~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~ 213 (216)
T PF00091_consen 155 KKPIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPA 213 (216)
T ss_dssp TSEEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHH
T ss_pred ccceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCC
Confidence 999999999999 43 889999999999999999999999999999999999999998773
No 15
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=3.6e-55 Score=389.49 Aligned_cols=176 Identities=45% Similarity=0.850 Sum_probs=170.7
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCC
Q 036688 2 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSG 81 (223)
Q Consensus 2 ~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~ 81 (223)
||||+||+||||||||.+||+++++|| |+||+|+||+||++|++++.+
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh--------------------------------~~pR~v~iD~e~~~i~~i~~~ 48 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH--------------------------------LKARAVLIDMEEGVVNEILKG 48 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh--------------------------------cCCcceeccCChhHHHHHhcC
Confidence 799999999999999999999999886 579999999999999999998
Q ss_pred CCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhc
Q 036688 82 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 161 (223)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y 161 (223)
+++++|+|++++.+++|+||||++||+..|++..++++|+||+++|+||.+|||++++|++||||||+++.++|.|+|+|
T Consensus 49 ~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y 128 (379)
T cd02190 49 PLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEF 128 (379)
T ss_pred ccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHH
Q 036688 162 PDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 210 (223)
Q Consensus 162 ~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~ 210 (223)
|++.+++++|+|+.. ++.+++|||++|+|++|.+++|+++++||++|.
T Consensus 129 ~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~ 176 (379)
T cd02190 129 PEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV 176 (379)
T ss_pred CccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH
Confidence 999999999999964 788899999999999999999999999999997
No 16
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=2.6e-49 Score=353.15 Aligned_cols=180 Identities=55% Similarity=1.038 Sum_probs=171.8
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCCC
Q 036688 3 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP 82 (223)
Q Consensus 3 Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 82 (223)
|||+||+||||||||.+||+++ |+||+||++|++++..+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-----------------------------------------i~iD~e~~~i~~i~~~~ 39 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-----------------------------------------ILVDLDPRVINEILQGQ 39 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-----------------------------------------HcccCCcchhhhhhccc
Confidence 8999999999999999999865 99999999999999888
Q ss_pred CcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcC
Q 036688 83 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 162 (223)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~ 162 (223)
.+.+|++++++++++|+||||++||+..|++..|+++|+||+++|+||.+|||++++|++||||||+++.++|.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 40 LSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred ccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688 163 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 163 ~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~ 223 (223)
++.+++++|+|+...+++++++||++|++++|.+++|+++++||++|.++|.+.+.+..|+
T Consensus 120 ~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~ 180 (382)
T cd06059 120 KILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPS 180 (382)
T ss_pred ccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCC
Confidence 9999999999997655579999999999999999999999999999999999988876653
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=6.3e-46 Score=325.41 Aligned_cols=178 Identities=53% Similarity=0.981 Sum_probs=168.1
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCCC
Q 036688 3 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP 82 (223)
Q Consensus 3 Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 82 (223)
|||+||+||||||||++||+++ |+||+|+++++.++..+
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-----------------------------------------v~idtd~~~l~~~~~~~ 39 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-----------------------------------------VLVDTEPGVIDETLSGP 39 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-----------------------------------------heecCCHHHHHHHhCcc
Confidence 8999999999999999999743 99999999999998887
Q ss_pred CcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcC
Q 036688 83 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 162 (223)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~ 162 (223)
.+.+|++++.+++++|+||||+.||+..|++..|+++|+||+++|+||++|||+++|+++||||||+++.+++.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 40 YRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred cccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCC
Q 036688 163 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTP 222 (223)
Q Consensus 163 ~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p 222 (223)
++++++++|+|+...+ .++++||+++++++|.+++|+++++||++|+++|++.+++.+|
T Consensus 120 ~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~ 178 (328)
T cd00286 120 KRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKP 178 (328)
T ss_pred ccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCC
Confidence 9999999999996433 6899999999999999999999999999999999998877665
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=3.8e-39 Score=293.10 Aligned_cols=197 Identities=25% Similarity=0.371 Sum_probs=157.8
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCC----CCcccceeEEecCCCCcccC
Q 036688 2 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEAS----GGRYVPRAVLMDLEPGTMDS 77 (223)
Q Consensus 2 ~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pR~l~vD~e~~~i~~ 77 (223)
|||||||+||++|+||+||||.|...+...+++ +....+.+|+|+++. ..+|+||+|++|++++....
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~--------~~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl 72 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDS--------PASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHL 72 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCC--------ccccCCCceeeeccccCCCceeEcCcEEEEecCCccccc
Confidence 799999999999999999999995554333333 123467889999964 57999999999999976432
Q ss_pred cCCCC---------------C-cccccCCceeecc-----CCCCCCCCccccc---hhhHHHHHHHHHHHhhhhhcCCCc
Q 036688 78 IRSGP---------------Y-GQIFRPDNFVFGQ-----SGAGNNWAKGHYT---EGAELIDAVLDVVRKEAENCDCLQ 133 (223)
Q Consensus 78 i~~~~---------------~-~~l~~~~~~~~~~-----~~~~nn~a~G~~~---~g~~~~~~~~d~ir~~~E~cd~lq 133 (223)
-+.+. | +-.|||+++..-+ .+.+++|+.|+.. .+.+..|+++|+||+++|+||.+|
T Consensus 73 ~~~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQ 152 (493)
T cd06060 73 PEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQ 152 (493)
T ss_pred ccccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccc
Confidence 21111 1 2358999877653 3455667666532 345577899999999999999999
Q ss_pred ceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCC----CcccchhhhhHhhHHHHhhcCCEEEEeecH
Q 036688 134 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV----SDTVVEPYNATLSVHQLVENADECMVLDNE 207 (223)
Q Consensus 134 gf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~----~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~ 207 (223)
||+++++++||| ||+++.++|+|+|||||+.++.+++.|.+.. .+.++++||++|++.+|.++||+++|+.-.
T Consensus 153 GFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~ 229 (493)
T cd06060 153 GFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLS 229 (493)
T ss_pred cEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 999999999999 8999999999999999999999999997532 256899999999999999999999999743
No 19
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=3.1e-34 Score=233.77 Aligned_cols=159 Identities=38% Similarity=0.663 Sum_probs=146.8
Q ss_pred ceeecCCCCcccceeEEecCCCCcccCcCCCCCcccccCCceeeccCCCCCCCCccccc-----hhhHHHHHHHHHHHhh
Q 036688 51 VYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT-----EGAELIDAVLDVVRKE 125 (223)
Q Consensus 51 ~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~~l~~~~~~~~~~~~~~nn~a~G~~~-----~g~~~~~~~~d~ir~~ 125 (223)
.+|.++ ++.||+|++|+++++++.+..++.+..|++++.+.++.++||||++||++ .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 456664 78999999999999999988777788899999999999999999999998 8999999999999999
Q ss_pred hhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEee
Q 036688 126 AENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 205 (223)
Q Consensus 126 ~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~ 205 (223)
+|.| ++|+++++++||||||+++.+++.++ +||++. ++++++|+ ..|..+++||+++++++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 88999999999999999999999999 999877 99999995 36788999999999999999999999999
Q ss_pred cHHHHHHHhhccCC
Q 036688 206 NEALYDICFRTLKL 219 (223)
Q Consensus 206 N~~l~~~~~~~~~i 219 (223)
|++|.++|.+++.+
T Consensus 153 N~~l~~~~~~~~~~ 166 (192)
T smart00864 153 NDALLDICGRNLPI 166 (192)
T ss_pred hHHHHHHHhccCCc
Confidence 99999999877765
No 20
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=100.00 E-value=1.3e-32 Score=240.61 Aligned_cols=199 Identities=26% Similarity=0.416 Sum_probs=144.4
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCC----CCcccceeEEecCCCCccc
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEAS----GGRYVPRAVLMDLEPGTMD 76 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pR~l~vD~e~~~i~ 76 (223)
||||+|||+|+.+|.+|+||||+|..-.+..++...+.. + ...+ +|+|+.+. ..+|+||+|++|++.....
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~---~-~~~n-dvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~ 75 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPG---E-LCPN-DVLYRTGRTDHGQITYTPRLLLVDLKGELGT 75 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChh---h-cCcc-hhhhhccccccCceeeccceeEEecCccccc
Confidence 999999999999999999999999655555554443221 1 1122 89999974 3589999999999986531
Q ss_pred C------------------------cCCCCC-------------------------------------------cccccC
Q 036688 77 S------------------------IRSGPY-------------------------------------------GQIFRP 89 (223)
Q Consensus 77 ~------------------------i~~~~~-------------------------------------------~~l~~~ 89 (223)
. ++..+. +..|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp 155 (483)
T KOG2530|consen 76 LKYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHP 155 (483)
T ss_pred cccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCc
Confidence 1 010000 112334
Q ss_pred CceeeccCCCCCCCCccccchhhHHH------HHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCC
Q 036688 90 DNFVFGQSGAGNNWAKGHYTEGAELI------DAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 163 (223)
Q Consensus 90 ~~~~~~~~~~~nn~a~G~~~~g~~~~------~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~ 163 (223)
+.+.--+..--+.-|.+.|..|.+++ +++.|+||+++|+||.+|||+++.++.+||| |+++.+++.|+|||++
T Consensus 156 ~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~ 234 (483)
T KOG2530|consen 156 RTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSK 234 (483)
T ss_pred cccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcC
Confidence 33222111111111245567777654 6889999999999999999999999999996 9999999999999999
Q ss_pred ceeEEEeccCCCCC-Cc---cc---chhhhhHhhHHHHhhcCCEEEEee
Q 036688 164 RMMMTFSVFPSPKV-SD---TV---VEPYNATLSVHQLVENADECMVLD 205 (223)
Q Consensus 164 ~~~~~~~v~P~~~~-~~---~~---~~~~N~~lsl~~l~e~~d~~~~~~ 205 (223)
+.+.++...|.+.. .+ .+ ....|.++++++|.+.|++++|+.
T Consensus 235 ~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~ 283 (483)
T KOG2530|consen 235 KAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLS 283 (483)
T ss_pred CceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccc
Confidence 99999999885432 22 12 226789999999999999999985
No 21
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=99.97 E-value=1.1e-32 Score=236.58 Aligned_cols=161 Identities=88% Similarity=1.410 Sum_probs=151.9
Q ss_pred ccccccccceeecCCCCcccceeEEecCCCCcccCcCCCCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHH
Q 036688 43 DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 122 (223)
Q Consensus 43 ~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~i 122 (223)
+.+..+++++|.+...++|+||++++|++|+++++++.++++.+|+|++ ++++ .|+|+.|+++.|.
T Consensus 5 ~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds----- 70 (369)
T KOG1375|consen 5 DLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS----- 70 (369)
T ss_pred cceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-----
Confidence 4567899999999999999999999999999999999999999999998 4444 8999999988877
Q ss_pred HhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEE
Q 036688 123 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 202 (223)
Q Consensus 123 r~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~ 202 (223)
.||++|||+++|+++||||||.++.++..++++||.++..++++.|+++ ++++++|||+.|++.+|++++|.++
T Consensus 71 -----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ 144 (369)
T KOG1375|consen 71 -----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETF 144 (369)
T ss_pred -----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccc
Confidence 8999999999999999999999999999999999999999999999976 8999999999999999999999999
Q ss_pred EeecHHHHHHHhhccCCCCCC
Q 036688 203 VLDNEALYDICFRTLKLSTPS 223 (223)
Q Consensus 203 ~~~N~~l~~~~~~~~~i~~p~ 223 (223)
++||++|++||.+.++++.|+
T Consensus 145 cidNeal~dic~~~lkl~~~~ 165 (369)
T KOG1375|consen 145 CIDNEALYDICFRTLKLKTPS 165 (369)
T ss_pred ccccHHHHHHHhhhhcccCCC
Confidence 999999999999999999885
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.96 E-value=4.4e-28 Score=213.72 Aligned_cols=175 Identities=26% Similarity=0.355 Sum_probs=149.6
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS 80 (223)
Q Consensus 1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~ 80 (223)
|+ |..|.+|+||+.|-+++++.= .. .+.+|+||+++||+|+..+++++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~~-----~~-------------------------~~~~~~~~~iavntD~~~L~~l~~ 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRHD-----KR-------------------------SGFGYCVGALAINTAKNDLKGLKH 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHhC-----CC-------------------------cCCccceeEEEEECCHHHHHhhhc
Confidence 54 889999999999999998521 10 113678999999999999887753
Q ss_pred CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCC--CcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~--lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
.+.|++++.|++.+.+..+.+.+..|+++.++..|.||+++|.|+. +|+|+++++++||||||+++.+++.++
T Consensus 50 -----~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lk 124 (349)
T cd02202 50 -----IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELK 124 (349)
T ss_pred -----CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHH
Confidence 3467888888864444444455567999999999999999999997 999999999999999999999999999
Q ss_pred hhcCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHh
Q 036688 159 EEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICF 214 (223)
Q Consensus 159 ~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~ 214 (223)
++|+ ++++++.++|+.. +..+++||+.+++++|.+++|.+++|||++|+++|.
T Consensus 125 e~~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~ 177 (349)
T cd02202 125 ERYE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGE 177 (349)
T ss_pred HhCC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhcc
Confidence 9999 7899999999963 458999999999999999999999999999999873
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.89 E-value=1.6e-22 Score=175.23 Aligned_cols=166 Identities=23% Similarity=0.303 Sum_probs=130.5
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCCCC
Q 036688 4 ILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPY 83 (223)
Q Consensus 4 ii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~ 83 (223)
|..|.+|+||+.+-+++++. ++. -.+.+.+|++.+.++.+... .
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~~------------------------------~~~~iainTd~~~L~~~~a~-~ 46 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DKE------------------------------GRSAVAVNTDAQDLLGLEAE-N 46 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CCC------------------------------CccEEEEECcHHHHhcCCCC-c
Confidence 78899999999999998741 100 13578999998877766521 1
Q ss_pred cccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCC
Q 036688 84 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 163 (223)
Q Consensus 84 ~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~ 163 (223)
+-++.++ .+...|+|+||. .|++..+++.++||+.+|.||. |+++++++||||||+++.+++.+++.|+
T Consensus 47 ki~iG~~--~t~g~GaG~~~~-----~G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~- 115 (303)
T cd02191 47 RVLIGQA--RTKGLGAGANPE-----LGAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT- 115 (303)
T ss_pred EEecCCc--cccCCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC-
Confidence 1122111 122357888875 4679999999999999999995 7999999999999999999999999996
Q ss_pred ceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCC
Q 036688 164 RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLS 220 (223)
Q Consensus 164 ~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~ 220 (223)
..+++.++|+ ..|..+++||+.+++++|.+++|+++++||++|.++|.+ +.++
T Consensus 116 -~~~~vvt~Pf--~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~ 168 (303)
T cd02191 116 -LTVAVVTLPF--SDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE 168 (303)
T ss_pred -CEEEEEeCCc--ccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH
Confidence 3445555555 467789999999999999999999999999999999976 6653
No 24
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.85 E-value=1.1e-20 Score=164.23 Aligned_cols=167 Identities=17% Similarity=0.263 Sum_probs=128.2
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCCCC
Q 036688 4 ILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPY 83 (223)
Q Consensus 4 ii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~ 83 (223)
|..|.+|+||+.+-+++++. ++. -...+.+|+|...++.++.. .
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~~------------------------------~~~~~a~ntD~~~L~~~~~~-~ 46 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GLE------------------------------GVEFIAANTDAQALAKSKAP-N 46 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CCC------------------------------CceEEEEECCHHHHhcCCCC-c
Confidence 67899999999999998751 110 03468888888877766532 2
Q ss_pred cccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCC
Q 036688 84 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 163 (223)
Q Consensus 84 ~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~ 163 (223)
+-++.++ .+.-.|+|+||+ .|++..++..|+||+.+|.||.+ +++++++||||||+++.+++..+ +|+.
T Consensus 47 k~~ig~~--~t~g~Gag~~~~-----~g~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g~ 115 (304)
T cd02201 47 KIQLGKE--LTRGLGAGGDPE-----VGRKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMGA 115 (304)
T ss_pred EEEcCCC--CCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcCC
Confidence 2222222 222356777777 46788899999999999999986 99999999999999998666555 5664
Q ss_pred ceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCC
Q 036688 164 RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLS 220 (223)
Q Consensus 164 ~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~ 220 (223)
..+++.+.|+. .|..+++||+.+++++|.+++|+++++||++|+++|.+++.++
T Consensus 116 -~~~~vvt~Pf~--~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~ 169 (304)
T cd02201 116 -LTVAVVTKPFS--FEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLL 169 (304)
T ss_pred -CEEEEEeCCcc--ccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHH
Confidence 56666667764 5667999999999999999999999999999999998777654
No 25
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.84 E-value=2e-20 Score=164.83 Aligned_cols=160 Identities=22% Similarity=0.341 Sum_probs=125.4
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCCCC
Q 036688 4 ILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPY 83 (223)
Q Consensus 4 ii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~ 83 (223)
|..|.+|+||+.+-+++++. ++ .-...+.+|+|...++.+...
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~------------------------------~~~~~iainTD~~~L~~~~a~-- 62 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV------------------------------EGVEFIAINTDAQHLKTTKAD-- 62 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC------------------------------CceEEEEEECCHHHHhcCCCC--
Confidence 78899999999999998753 10 013458888887776655421
Q ss_pred cccccCCceeecc-----CCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 84 GQIFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 84 ~~l~~~~~~~~~~-----~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
+.++.|+ .|+|++|+ .|++..++.+|+||+.+|.||.+ +++++++||||||+++.+++.++
T Consensus 63 ------~ki~iG~~~t~G~GaG~~~~-----~G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak 128 (349)
T TIGR00065 63 ------KKILIGKKLTRGLGAGGNPE-----IGRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK 128 (349)
T ss_pred ------eEEEcCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH
Confidence 2233433 46777776 58899999999999999999996 99999999999999886555555
Q ss_pred hhcCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCC
Q 036688 159 EEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 219 (223)
Q Consensus 159 ~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i 219 (223)
+|+ +..+++.++|+. .|..+++||+.+++.+|.+++|+++++||++|+++|.+ +.+
T Consensus 129 -e~~-~l~vaivt~Pf~--~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i 184 (349)
T TIGR00065 129 -ELG-ALTVAVVTKPFK--FEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPL 184 (349)
T ss_pred -HcC-CCEEEEEeCCcc--ccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCH
Confidence 565 455666666764 57789999999999999999999999999999999976 654
No 26
>PF14881 Tubulin_3: Tubulin domain
Probab=99.83 E-value=4.5e-20 Score=148.53 Aligned_cols=121 Identities=26% Similarity=0.421 Sum_probs=91.6
Q ss_pred ccccCCceeeccCCCCCC--CCccccchhhHHH------HHHHHH-HHhhhhhcCCCcceeEEEecCCCcCCchhHHHHH
Q 036688 85 QIFRPDNFVFGQSGAGNN--WAKGHYTEGAELI------DAVLDV-VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLIS 155 (223)
Q Consensus 85 ~l~~~~~~~~~~~~~~nn--~a~G~~~~g~~~~------~~~~d~-ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle 155 (223)
-.|||+++..-++..-++ -+..-|..|.+.+ ++++|+ ||+++|+||.+||||++.++.+||| |+++.++|
T Consensus 18 ~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~Le 96 (180)
T PF14881_consen 18 VHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLLE 96 (180)
T ss_pred ceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHHH
Confidence 357777776655432222 2334466676654 345665 9999999999999999999999997 99999999
Q ss_pred HHHhhcCCcee-EEEeccCCCCCC-----cccchhhhhHhhHHHHhhcCCEEEEeec
Q 036688 156 KIREEYPDRMM-MTFSVFPSPKVS-----DTVVEPYNATLSVHQLVENADECMVLDN 206 (223)
Q Consensus 156 ~l~~~y~~~~~-~~~~v~P~~~~~-----~~~~~~~N~~lsl~~l~e~~d~~~~~~N 206 (223)
+|+|||||+.+ +.+++.+..... ....+.+|.++++.+|.++|++++|+..
T Consensus 97 ~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~ 153 (180)
T PF14881_consen 97 HLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLST 153 (180)
T ss_pred HHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCC
Confidence 99999999986 666665543211 1234568999999999999999999973
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.81 E-value=3.8e-19 Score=157.63 Aligned_cols=161 Identities=22% Similarity=0.405 Sum_probs=127.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCCCC
Q 036688 4 ILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPY 83 (223)
Q Consensus 4 ii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~ 83 (223)
|..|.+|+||+.+-+++++. ++. -...+.+++|.+.++.+...
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~~------------------------------~v~~iaiNTD~q~L~~~~a~-- 73 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GIE------------------------------GAETIAINTDAQHLAMIKAD-- 73 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CCC------------------------------CceEEEEECCHHHHhcCCCC--
Confidence 78899999999999998841 110 02458888888776655432
Q ss_pred cccccCCceeecc-----CCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 84 GQIFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 84 ~~l~~~~~~~~~~-----~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
..++.|+ .|+|++ +..|++..++..|.||+.+|.||. |+++++++||||||+++.+++.++
T Consensus 74 ------~ki~iG~~~t~G~GaG~d-----p~~G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iak 139 (378)
T PRK13018 74 ------KKILIGKSLTRGLGAGGD-----PEVGRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAK 139 (378)
T ss_pred ------cEEecCCccCCCCCCCCC-----hHHHHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHH
Confidence 2334443 355555 455778889999999999999998 799999999999999999999998
Q ss_pred hhcCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCC
Q 036688 159 EEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLS 220 (223)
Q Consensus 159 ~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~ 220 (223)
+ ++ ...+++.+.|+. .|...+..|+.+++.+|.+++|+++++||++|.++| +++.++
T Consensus 140 e-~g-~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~ 196 (378)
T PRK13018 140 E-QG-ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA 196 (378)
T ss_pred H-cC-CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH
Confidence 7 44 456788899986 456788999999999999999999999999999999 666653
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.77 E-value=3.7e-18 Score=151.51 Aligned_cols=162 Identities=19% Similarity=0.302 Sum_probs=124.5
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCCCC
Q 036688 3 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP 82 (223)
Q Consensus 3 Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 82 (223)
.|..|.+|.||+.+-+++++. ++. . ...+.+++|.+.++.+...
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~~------------------~------------v~fia~NTD~q~L~~~~a~- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GIQ------------------G------------VEFIAANTDAQALLKSKAP- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CCC------------------C------------ceEEEEeCcHHHHhcCCCC-
Confidence 377899999999999998752 110 0 1347888887766654432
Q ss_pred CcccccCCceeecc-----CCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHH
Q 036688 83 YGQIFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKI 157 (223)
Q Consensus 83 ~~~l~~~~~~~~~~-----~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l 157 (223)
..+..|+ .|+|++|. .|++..++..+.||+.++.||.+ +++++++||||||.++ ++..+
T Consensus 59 -------~ki~lG~~~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~i 122 (384)
T PRK09330 59 -------VKIQLGEKLTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEI 122 (384)
T ss_pred -------eEEEcCCcccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHH
Confidence 2233343 35666655 78999999999999999999988 9999999999999999 56666
Q ss_pred HhhcCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCC
Q 036688 158 REEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 219 (223)
Q Consensus 158 ~~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i 219 (223)
..+|+ ...+++...|+ ..|..++++|+.+++.+|.+++|.++++||++|.++|.+++.+
T Consensus 123 ake~g-~ltvaVvt~PF--~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l 181 (384)
T PRK09330 123 AKELG-ILTVAVVTKPF--SFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPL 181 (384)
T ss_pred HHHcC-CcEEEEEecCc--cccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCH
Confidence 66776 33444444454 4678899999999999999999999999999999999876655
No 29
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.61 E-value=4.8e-16 Score=116.55 Aligned_cols=65 Identities=29% Similarity=0.476 Sum_probs=52.1
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCC----CCcccceeEEecCCCCc
Q 036688 2 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEAS----GGRYVPRAVLMDLEPGT 74 (223)
Q Consensus 2 ~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pR~l~vD~e~~~ 74 (223)
|||||||+|+.+|.||+||||+| |..+..+... +....+++|+||++. ..+|+||+|++|++.+.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~y~~~~------~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~l 69 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLPYDPDE------KPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGL 69 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccccCccc------cCcccCCceEEecccCcCCCeeECCcEEEEecCCCc
Confidence 79999999999999999999999 7666432221 112457899999973 46899999999999886
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.29 E-value=6.3e-11 Score=103.57 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=90.5
Q ss_pred CccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCCcccch
Q 036688 104 AKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVE 183 (223)
Q Consensus 104 a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~~~~~~ 183 (223)
+.+....|++..++..+.|++.++..| -+.++++++||||+|.++.+.+.+++ .....+++.++|+. .|...+
T Consensus 71 aGa~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r 143 (338)
T COG0206 71 AGANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPR 143 (338)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchH
Confidence 335578899999999999999988666 55889999999999999999999998 56678888999996 455678
Q ss_pred hhhhHhhHHHHhhcCCEEEEeecHHHHHHHh
Q 036688 184 PYNATLSVHQLVENADECMVLDNEALYDICF 214 (223)
Q Consensus 184 ~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~ 214 (223)
.-|+..++..|.+++|.+|+++|+.|.+...
T Consensus 144 ~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~ 174 (338)
T COG0206 144 MENAEEGIEELREVVDTLIVIPNDKLLKGKD 174 (338)
T ss_pred HHHHHHHHHHHHHhCCcEEEEecHHHHhccC
Confidence 8899999999999999999999999998865
No 31
>PF13809 Tubulin_2: Tubulin like
Probab=97.68 E-value=0.0011 Score=58.87 Aligned_cols=101 Identities=25% Similarity=0.196 Sum_probs=61.6
Q ss_pred ccCCCCCCCCccccch---hhHHHHHHHHHHHhhhh-----hc-CCCcceeEEEecCCCcCCchhHHHHHHHHhhc----
Q 036688 95 GQSGAGNNWAKGHYTE---GAELIDAVLDVVRKEAE-----NC-DCLQGFQVCHSLGGGTGSGMGTLLISKIREEY---- 161 (223)
Q Consensus 95 ~~~~~~nn~a~G~~~~---g~~~~~~~~d~ir~~~E-----~c-d~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y---- 161 (223)
...|+|...+-|.... -.++.+.+.+.++..++ .. +.---+.|+.|++||||||+---++-.|++.+
T Consensus 101 ~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~ 180 (345)
T PF13809_consen 101 LSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQPG 180 (345)
T ss_pred hhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhccc
Confidence 3467777777665322 22333444444442111 11 11124678899999999999988899998866
Q ss_pred -CCceeEEEeccCCCCCC---cccchhhhhHhhHHHHh
Q 036688 162 -PDRMMMTFSVFPSPKVS---DTVVEPYNATLSVHQLV 195 (223)
Q Consensus 162 -~~~~~~~~~v~P~~~~~---~~~~~~~N~~lsl~~l~ 195 (223)
....+..+.++|..... +.....-|+.=+|.+|.
T Consensus 181 ~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~ 218 (345)
T PF13809_consen 181 QDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELD 218 (345)
T ss_pred CCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHH
Confidence 34467888899973211 11445677777777775
No 32
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=80.26 E-value=8.8 Score=28.36 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhhcCCCcceeEEEecCCCcC
Q 036688 115 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGTG 146 (223)
Q Consensus 115 ~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtG 146 (223)
.+++.+++++.+++.+.=+++.++.++-|||-
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45566777777777766789999999999863
No 33
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=78.98 E-value=9.3 Score=28.32 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCC
Q 036688 115 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 163 (223)
Q Consensus 115 ~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~ 163 (223)
.+.+.+++++.+++.+.-+++.++.++-||| ...+...+..++++
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS----p~n~~~~~~~~~~~ 84 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGS----PNNAAARLSMEHPP 84 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC----HHHHHHHHHhcCCC
Confidence 3455666777777777778999999999875 33344444444444
No 34
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=78.44 E-value=8.1 Score=28.30 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhhcCCCcceeEEEecCCCc
Q 036688 115 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGT 145 (223)
Q Consensus 115 ~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGt 145 (223)
.+.+.+++++.+++.+.-+++.++.++.|||
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGS 70 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCc
Confidence 4556677888888888889999999999875
No 35
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=74.48 E-value=3.7 Score=31.02 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhcCCCcceeEEEecCCCc
Q 036688 116 DAVLDVVRKEAENCDCLQGFQVCHSLGGGT 145 (223)
Q Consensus 116 ~~~~d~ir~~~E~cd~lqgf~i~~sl~GGt 145 (223)
+...++|+..+++++. +|..++.++ |||
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gss 69 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSA 69 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CCh
Confidence 3456778888888888 999999999 764
No 36
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=71.79 E-value=5.3 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.760 Sum_probs=23.0
Q ss_pred CCcCCchhHHHHHHHHhhcCC-ceeEEEe
Q 036688 143 GGTGSGMGTLLISKIREEYPD-RMMMTFS 170 (223)
Q Consensus 143 GGtGsG~~s~lle~l~~~y~~-~~~~~~~ 170 (223)
+|-|.|+|..+++.||.++|+ ..++++.
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlG 34 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALG 34 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEe
Confidence 355678999999999999998 6677765
No 37
>PTZ00010 tubulin beta chain; Provisional
Probab=67.81 E-value=2.5 Score=38.91 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=43.3
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcC---CCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCC
Q 036688 4 ILHIQGGQCGNQIGSKFWEVICDEHG---VDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEP 72 (223)
Q Consensus 4 ii~iq~Gq~GnqiG~~~w~~~~~e~~---i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~ 72 (223)
|++--.|++|..+|+.+|+.+.+|+. +...+.++..+..+......++.+....-..+.++.+++|-+.
T Consensus 135 i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~a 206 (445)
T PTZ00010 135 ITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEA 206 (445)
T ss_pred EEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHH
Confidence 66777899999999999999999985 1112233321101222334455555544456677888888654
No 38
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=66.45 E-value=28 Score=30.74 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCC-cccchhhhhH
Q 036688 110 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVS-DTVVEPYNAT 188 (223)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~-~~~~~~~N~~ 188 (223)
...+.+..+.+.|+... +..+||.|+|+.+ | =-.++.+++.+-...+|..+++=+-.|....+ |...-.++++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34566667777777655 4689999999654 2 13456667765555566666666778875443 3333333333
Q ss_pred hhHHHHhhcCCEEEEeecH
Q 036688 189 LSVHQLVENADECMVLDNE 207 (223)
Q Consensus 189 lsl~~l~e~~d~~~~~~N~ 207 (223)
.+..-...+...+.|++.
T Consensus 137 -~~A~~~~~~GV~V~f~~~ 154 (335)
T PRK09461 137 -YVAANYPINEVTLFFNNK 154 (335)
T ss_pred -HHHcCCCCCeEEEEECCE
Confidence 232222233455555543
No 39
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=63.13 E-value=22 Score=28.51 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCC
Q 036688 115 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 177 (223)
Q Consensus 115 ~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~ 177 (223)
...+.+.|+..+|+ .+. -++.+..-|+. -.++.++-.|+.+||...+ ..++|+...
T Consensus 28 k~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q 83 (177)
T PF06908_consen 28 KKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQ 83 (177)
T ss_dssp HHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-T
T ss_pred HHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccch
Confidence 34455667777764 222 22333333333 2356677788999997433 456787543
No 40
>PRK13660 hypothetical protein; Provisional
Probab=61.52 E-value=50 Score=26.63 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCC
Q 036688 116 DAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 177 (223)
Q Consensus 116 ~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~ 177 (223)
..+...|+..+|+ .+.=|.+ +..=|+-- .++.++-.|+.+||...+ ..++|+...
T Consensus 29 ~aL~~~l~~~~e~--G~~wfi~--ggalG~d~-wAaEvvl~LK~~yp~lkL--~~~~PF~~q 83 (182)
T PRK13660 29 KAIKRKLIALLEE--GLEWVII--SGQLGVEL-WAAEVVLELKEEYPDLKL--AVITPFEEH 83 (182)
T ss_pred HHHHHHHHHHHHC--CCCEEEE--CCcchHHH-HHHHHHHHHHhhCCCeEE--EEEeCccch
Confidence 4445566666663 3332222 11112211 357788889999997543 346677543
No 41
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=56.95 E-value=62 Score=28.25 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCC-cccchhhhhH
Q 036688 110 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVS-DTVVEPYNAT 188 (223)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~-~~~~~~~N~~ 188 (223)
...+.+.++.+.|++.+++ .+||.|+|+.. | =-.++.++..+-+..+|..+++=+..|....+ |...-.++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--T-me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--T-MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--T-HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--H-HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3456677777778877743 99999999554 1 12345556655555466566666788875433 3333334443
Q ss_pred hhHHHHhhcCCEEEEeecH
Q 036688 189 LSVHQLVENADECMVLDNE 207 (223)
Q Consensus 189 lsl~~l~e~~d~~~~~~N~ 207 (223)
....+- +.....++|++.
T Consensus 128 ~~A~~~-~~~GV~v~f~~~ 145 (313)
T PF00710_consen 128 RVAASP-AGPGVLVVFNGR 145 (313)
T ss_dssp HHHHSG-GTSSEEEEETTE
T ss_pred HHHhcc-cCCceEEEeCCC
Confidence 333322 255666666654
No 42
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=56.88 E-value=48 Score=29.10 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCCcccchhhhhHh
Q 036688 110 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 189 (223)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~l 189 (223)
...+.+..+.+.|++..+ ..+||.|+|+.. | =-.++..+..+-+. +|..+++=+-.|....+.+..+-+..++
T Consensus 60 ~t~~~w~~l~~~I~~~~~---~~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYD---SYDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHH---hcCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 345666677777777665 289999999554 2 12355566655444 6666666677887544433333333333
Q ss_pred hHHHHhh--cCCEEEEeecH
Q 036688 190 SVHQLVE--NADECMVLDNE 207 (223)
Q Consensus 190 sl~~l~e--~~d~~~~~~N~ 207 (223)
......+ .....+.|++.
T Consensus 133 ~~A~~~~~~~~gV~V~f~~~ 152 (323)
T cd00411 133 YVAANYDSRGRGVLVVFNDR 152 (323)
T ss_pred HHHcCcccCCCeEEEEECCE
Confidence 3332222 34566677654
No 43
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=56.74 E-value=29 Score=26.36 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=32.4
Q ss_pred cccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhc
Q 036688 106 GHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 161 (223)
Q Consensus 106 G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y 161 (223)
|++.....+...+...+++...++..-+-+..=||+||+ ++..+...++...
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~ 53 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRG 53 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhcc
Confidence 566666677777777777766655555444444688654 5555566666653
No 44
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=53.75 E-value=75 Score=28.96 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCC-cccchhhhhHh
Q 036688 111 GAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVS-DTVVEPYNATL 189 (223)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~-~~~~~~~N~~l 189 (223)
..+.+..+.+.|++.++ +..+||.|+|+.. | =-.++..+..+-+..++..+++=+-.|....+ |...-.++++.
T Consensus 121 tp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~ 195 (404)
T TIGR02153 121 KPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVR 195 (404)
T ss_pred CHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHHH
Confidence 45566777778877765 3469999999554 2 13456666655554466666666778875433 43333444443
Q ss_pred hHHHHhhcCCEEEEeecH
Q 036688 190 SVHQLVENADECMVLDNE 207 (223)
Q Consensus 190 sl~~l~e~~d~~~~~~N~ 207 (223)
.-.. ..+...++|+++
T Consensus 196 ~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 196 AATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHhC--CCCcEEEEECCc
Confidence 3221 455677778765
No 45
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=53.08 E-value=49 Score=29.12 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhhcCCCcceeEEEecCCCcC
Q 036688 115 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGTG 146 (223)
Q Consensus 115 ~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtG 146 (223)
.+++.+++++.+++.+.-+++.++.++-|||-
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 35566667777777776789999999999863
No 46
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=50.96 E-value=1.2e+02 Score=27.18 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=48.4
Q ss_pred eEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCC--------CC-------------cccchhhhhHhhHHHH
Q 036688 136 QVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPK--------VS-------------DTVVEPYNATLSVHQL 194 (223)
Q Consensus 136 ~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~--------~~-------------~~~~~~~N~~lsl~~l 194 (223)
.++..++|| |+.+-+...++...|+..++.+ -|... .+ |...-..=-.+++.-+
T Consensus 178 ~v~vpvGGG---GLisGia~~~k~~~p~~~vIGV--Ep~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~ 252 (347)
T COG1171 178 AVFVPVGGG---GLISGIATALKALSPEIKVIGV--EPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEIL 252 (347)
T ss_pred EEEEecCcc---HHHHHHHHHHHHhCCCCeEEEE--eeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHH
Confidence 456677765 7899999999999998665544 33210 01 0000001114677788
Q ss_pred hhcCCEEEEeecHHHHHHHhh
Q 036688 195 VENADECMVLDNEALYDICFR 215 (223)
Q Consensus 195 ~e~~d~~~~~~N~~l~~~~~~ 215 (223)
.++.|-++.+|-+++..-...
T Consensus 253 ~~~vd~~v~V~e~ei~~am~~ 273 (347)
T COG1171 253 RELVDDIVLVDEDEICAAMRD 273 (347)
T ss_pred HHcCCcEEEECHHHHHHHHHH
Confidence 899999999998888766543
No 47
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=49.62 E-value=92 Score=27.30 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCC
Q 036688 111 GAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVS 178 (223)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~ 178 (223)
..+.+..+.+.|+..+. .+..+||.|+|+.. | =-.++..+..+-+..+|..+++=+-.|....+
T Consensus 58 t~~~w~~la~~i~~~~~-~~~~dG~VVtHGTD--T-meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~ 121 (323)
T smart00870 58 TPADWLKLAKRINEALA-DDGYDGVVVTHGTD--T-LEETAYFLSLTLDSLDKPVVLTGAMRPATALS 121 (323)
T ss_pred CHHHHHHHHHHHHHHhc-cCCCCEEEEecCCc--c-HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCC
Confidence 34555666666665443 25789999999554 2 13456666665555566666666778875433
No 48
>PLN02847 triacylglycerol lipase
Probab=49.13 E-value=24 Score=33.81 Aligned_cols=62 Identities=27% Similarity=0.335 Sum_probs=40.1
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHh--hcCCceeEEEe
Q 036688 105 KGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE--EYPDRMMMTFS 170 (223)
Q Consensus 105 ~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~--~y~~~~~~~~~ 170 (223)
+|.+...+.+.+.+...|++.++++...+-+.+=||+|||+ ++.+.-.|++ .|++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 46666666777777778888888877654444447887654 5555555665 45665555555
No 49
>PF03283 PAE: Pectinacetylesterase
Probab=48.53 E-value=26 Score=31.39 Aligned_cols=51 Identities=25% Similarity=0.405 Sum_probs=34.9
Q ss_pred ccchhhHHHHHHHHHHHhh-hhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCC
Q 036688 107 HYTEGAELIDAVLDVVRKE-AENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 163 (223)
Q Consensus 107 ~~~~g~~~~~~~~d~ir~~-~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~ 163 (223)
.+-.|..+.+.+++.|... +.+ .+-+.+..+-+||.| +-.-.+++++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~---a~~vlltG~SAGG~g---~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPN---AKQVLLTGCSAGGLG---AILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCcc---cceEEEeccChHHHH---HHHHHHHHHHHhcc
Confidence 3556888888888877766 443 444477777777654 33347899999995
No 50
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=44.41 E-value=27 Score=26.30 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhhcCC-CcceeEEEecCCCcCCchhH-HHHHHHH
Q 036688 117 AVLDVVRKEAENCDC-LQGFQVCHSLGGGTGSGMGT-LLISKIR 158 (223)
Q Consensus 117 ~~~d~ir~~~E~cd~-lqgf~i~~sl~GGtGsG~~s-~lle~l~ 158 (223)
.+.++|++.+++++. =+|+.++.++ ||+ =+.+ ..++.+.
T Consensus 43 t~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~ 83 (125)
T TIGR02364 43 TSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLE 83 (125)
T ss_pred chHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhc
Confidence 345677788888855 7899999999 653 2323 3445554
No 51
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=43.86 E-value=28 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=18.9
Q ss_pred CcceeEEEecCCCcCCchhHHHHHHHHh
Q 036688 132 LQGFQVCHSLGGGTGSGMGTLLISKIRE 159 (223)
Q Consensus 132 lqgf~i~~sl~GGtGsG~~s~lle~l~~ 159 (223)
-.+|.|+.+...|+|+.+.+.+++.|.-
T Consensus 19 ~~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 19 KSGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp HTTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 3467999988888776666666666544
No 52
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=43.71 E-value=84 Score=27.79 Aligned_cols=72 Identities=22% Similarity=0.247 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCC-cccchhhhhH
Q 036688 110 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVS-DTVVEPYNAT 188 (223)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~-~~~~~~~N~~ 188 (223)
...+.+..+.+.|++..+ ..+||.|+|+.+ | =-.++..+..+-+. +|..+++=+-.|....+ |...-.++++
T Consensus 59 ~tp~~w~~la~~I~~~~~---~~dG~VVtHGTD--T-me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYD---DYDGFVITHGTD--T-MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCeEEEccCCc--h-HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 345666777777877665 389999999654 2 13456666655444 66666666778875433 3333334443
No 53
>PLN02408 phospholipase A1
Probab=42.96 E-value=57 Score=29.31 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhhhcCCCc-ceeEE-EecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCCc
Q 036688 113 ELIDAVLDVVRKEAENCDCLQ-GFQVC-HSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 179 (223)
Q Consensus 113 ~~~~~~~d~ir~~~E~cd~lq-gf~i~-~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~~ 179 (223)
.+.+++.+.|++.+++...-+ .+.++ ||+||+ ++...+-.|+..++..+.+.+-.+-.|..++
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN 243 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGN 243 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCccc
Confidence 456777888888887764322 34554 577543 5666666777777655433344444455554
No 54
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=42.64 E-value=1.3e+02 Score=27.69 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCC-cccchhhhhH
Q 036688 110 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVS-DTVVEPYNAT 188 (223)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~-~~~~~~~N~~ 188 (223)
...+.+..+.+.|++.++. ..+||.|+|+.. | =-.++..+..+- ..++..+++=+-.|....+ |...-.++++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--T-M~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--T-MHYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--h-HHHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 3455677777888877763 589999999654 2 134555565544 5566666666778875433 3333344444
Q ss_pred hhHHHHhhcCCEEEEeecH
Q 036688 189 LSVHQLVENADECMVLDNE 207 (223)
Q Consensus 189 lsl~~l~e~~d~~~~~~N~ 207 (223)
.. .. ...+...++|+++
T Consensus 207 ~~-A~-~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 LA-AT-SDIAEVVVVMHGT 223 (419)
T ss_pred HH-Hh-CCCCcEEEEECCc
Confidence 32 22 3455677777664
No 55
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=42.35 E-value=35 Score=27.81 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=35.1
Q ss_pred CccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhc
Q 036688 104 AKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 161 (223)
Q Consensus 104 a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y 161 (223)
.+|++..-..+.+.+...++...+++...+-+..=||+||+ +++.+.-.|...+
T Consensus 100 h~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~ 153 (229)
T cd00519 100 HSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRG 153 (229)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhC
Confidence 45666666677777777777777776555444444688654 5666666677665
No 56
>COG4053 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.22 E-value=62 Score=26.47 Aligned_cols=56 Identities=29% Similarity=0.488 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCC
Q 036688 116 DAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPS 174 (223)
Q Consensus 116 ~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~ 174 (223)
..+.|.+|+.+|.-+.+.|+ ..--.|.|-|++-..++.-.++|++..+++|-.|-.
T Consensus 69 ~aifevlr~y~eg~~Dl~Gi---Se~pdgAGEG~SYAeAa~~~seY~Davi~aFDTYgg 124 (244)
T COG4053 69 KAIFEVLRKYAEGFDDLRGI---SEDPDGAGEGLSYAEAASPISEYGDAVIIAFDTYGG 124 (244)
T ss_pred HHHHHHHHHHhhcccccccc---cCCCCcCCCCchHhhhcCchhhcCceEEEEEecccc
Confidence 45678899999988888775 333345566777666666689999999999876653
No 57
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=39.87 E-value=42 Score=27.94 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=21.9
Q ss_pred EEEecCCCcCCchhHHHHHHHHhhcCCc
Q 036688 137 VCHSLGGGTGSGMGTLLISKIREEYPDR 164 (223)
Q Consensus 137 i~~sl~GGtGsG~~s~lle~l~~~y~~~ 164 (223)
++-+++||+|||= +.+++.|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5668899999887 55889999998854
No 58
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=38.27 E-value=1.8e+02 Score=26.53 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 116 DAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 116 ~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
+.-.+.++..+. ...+++.|..+...|+|+.+.+.+++.|-
T Consensus 159 ~~Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~~~~~~ll~~lG 199 (448)
T PRK14318 159 DRYLRHLLGALP--TRLDGLKVVVDCAHGAASGVAPEAYRAAG 199 (448)
T ss_pred HHHHHHHHHHhc--cccCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 334444544443 24579999999998888888888888774
No 59
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=37.49 E-value=2e+02 Score=26.48 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCC---CCcccchhhhhHhh
Q 036688 114 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPK---VSDTVVEPYNATLS 190 (223)
Q Consensus 114 ~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~---~~~~~~~~~N~~ls 190 (223)
..+...+.|++.+..-..+.++.+..+.+.|+|+.+.+.+++.|- ...+.....|... ....+....+..|.
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~ 232 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLA 232 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHH
Confidence 444555556665543346777899999988776666666665543 3344444344321 11223333333222
Q ss_pred HHHHhhcCCEEEEeecHH
Q 036688 191 VHQLVENADECMVLDNEA 208 (223)
Q Consensus 191 l~~l~e~~d~~~~~~N~~ 208 (223)
-......+|+.+-+|-|+
T Consensus 233 ~~v~~~~aDlgia~DgDa 250 (464)
T COG1109 233 KAVKEHGADLGIAFDGDA 250 (464)
T ss_pred HHHHhcCCCEEEEecCCC
Confidence 222222588888887554
No 60
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=35.82 E-value=94 Score=29.16 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhh-hcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 114 LIDAVLDVVRKEAE-NCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 114 ~~~~~~d~ir~~~E-~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
..+.-.+.|.+.+. +.....++.|..+...|+|+.+.+.+++.|-
T Consensus 189 ~~~~Y~~~l~~~v~~~~~~~~~lkVvvd~~~G~~~~~~~~ll~~lG 234 (522)
T cd05801 189 FVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASVPYWQPIAEKYG 234 (522)
T ss_pred cHHHHHHHHHHhhChhhhhcCCceEEEeCCCCccHHHHHHHHHHcC
Confidence 33444444544442 1122468999999988888888888887764
No 61
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=35.58 E-value=1.6e+02 Score=22.65 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=28.4
Q ss_pred HHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCc
Q 036688 118 VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 164 (223)
Q Consensus 118 ~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~ 164 (223)
..+.+...++.-|.=+|+.++.++-||| -+..+-++..+.|..
T Consensus 45 l~~~~~~~~~~~d~~eevl~ltDl~GGS----P~N~A~~l~~~~~~~ 87 (143)
T COG2893 45 LTKQIAAAIAALDSGEGVLFLTDLFGGS----PFNVASRLAMEGPRV 87 (143)
T ss_pred HHHHHHHHHhhcCCCCcEEEEEecCCCC----HhHHHHHHHhhCCCc
Confidence 3334444455555668899999999886 455566666666664
No 62
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.53 E-value=1.9e+02 Score=23.15 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhhhc--CCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCC
Q 036688 115 IDAVLDVVRKEAENC--DCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSP 175 (223)
Q Consensus 115 ~~~~~d~ir~~~E~c--d~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~ 175 (223)
.-.+.+.||+.+|.- +.+.=+.++..+| +- =.++.++..|+++||+..+. .+.|+.
T Consensus 24 ~~~IKkai~~~l~~lleeGleW~litGqLG--~E-~WA~Evv~eLk~eyp~ik~a--vitpFe 81 (180)
T COG4474 24 VSYIKKAIKKKLEALLEEGLEWVLITGQLG--FE-LWAAEVVIELKEEYPHIKLA--VITPFE 81 (180)
T ss_pred HHHHHHHHHHHHHHHHhcCceEEEEecccc--HH-HHHHHHHHHHHhhCCCeeEE--EEechh
Confidence 344556666665553 4666677766552 22 12567788899999975432 356764
No 63
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=34.07 E-value=2.4e+02 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 114 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 114 ~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
+.+.-.+.|.+.+..--..+++.|+.+...|+|+.+.+.+++.|-
T Consensus 168 ~~~~Y~~~l~~~id~~i~~~~~kVvvD~~nG~~~~~~~~ll~~LG 212 (465)
T PRK14317 168 LLDDYRDALLESLPDRVNLQGVKIVLDLAWGAAVACAPEVFKALG 212 (465)
T ss_pred hHHHHHHHHHHhcCcccccCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 334444445444421113578999999988888778888877764
No 64
>PLN02371 phosphoglucosamine mutase family protein
Probab=33.09 E-value=1.6e+02 Score=28.11 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=23.2
Q ss_pred CCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 131 CLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 131 ~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
.++++.|+.+...|+|+.+.+.+++.|-
T Consensus 260 ~~~~lkIvvD~~nGag~~~~~~lL~~LG 287 (583)
T PLN02371 260 PLEGFKIVVDAGNGAGGFFAEKVLEPLG 287 (583)
T ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcC
Confidence 3579999999998888888888888774
No 65
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.93 E-value=2.7e+02 Score=23.47 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=23.5
Q ss_pred HHHHhhhhhcCCCcceeEEEecCCCcCCc--hhHHH---HHHHHhhcC
Q 036688 120 DVVRKEAENCDCLQGFQVCHSLGGGTGSG--MGTLL---ISKIREEYP 162 (223)
Q Consensus 120 d~ir~~~E~cd~lqgf~i~~sl~GGtGsG--~~s~l---le~l~~~y~ 162 (223)
++++..++ ...||..+.+..|-||.- +...+ +++++...+
T Consensus 154 eri~~i~~---~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~ 198 (256)
T TIGR00262 154 ERLKQIAE---KSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA 198 (256)
T ss_pred HHHHHHHH---hCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC
Confidence 34444444 467788988888777753 43444 444555433
No 66
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=32.79 E-value=2.5e+02 Score=25.61 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 116 DAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 116 ~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
+.-.+.|++.+......++|.|+.+...|+|+.+.+.+++.|.
T Consensus 154 ~~Y~~~l~~~i~~~~~~~~lkVvvD~~~G~~~~~~~~ll~~lg 196 (443)
T TIGR01455 154 GRYIEFLKSTLPRGLTLSGLKVVLDCANGAAYKVAPHVFRELG 196 (443)
T ss_pred HHHHHHHHHHhhcccccCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 3334444444432123468999999988887777777776663
No 67
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=32.73 E-value=62 Score=21.27 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=18.5
Q ss_pred CCchhHHHHHHHHhhcCCceeEE
Q 036688 146 GSGMGTLLISKIREEYPDRMMMT 168 (223)
Q Consensus 146 GsG~~s~lle~l~~~y~~~~~~~ 168 (223)
|.|+|+.+++.+.+.++.+.+..
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEEE
Confidence 35899999999999998766543
No 68
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=32.13 E-value=2.5e+02 Score=22.06 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhhhcCCCcceeEEEecCCCcC---CchhHHHHHHHHhhcCC-ceeEEEeccCCCCCCcccchhhhhHhh
Q 036688 115 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGTG---SGMGTLLISKIREEYPD-RMMMTFSVFPSPKVSDTVVEPYNATLS 190 (223)
Q Consensus 115 ~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtG---sG~~s~lle~l~~~y~~-~~~~~~~v~P~~~~~~~~~~~~N~~ls 190 (223)
.+.+.+.+.+.+++ -.++|+.+----.+..+ .-.-..+++.|++.+++ ..++++++-|...... . ..-
T Consensus 89 ~~~f~~~~~~~v~~-~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~~~~~~~~~----~---~~~ 160 (210)
T cd00598 89 RAAFANSLVSFLKT-YGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAVPASYFDLG----Y---AYD 160 (210)
T ss_pred HHHHHHHHHHHHHH-cCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEecCChHHhh----c---cCC
Confidence 34455555555544 37999999765443332 11235678889999987 4566666555431111 0 233
Q ss_pred HHHHhhcCCEEEEeecH
Q 036688 191 VHQLVENADECMVLDNE 207 (223)
Q Consensus 191 l~~l~e~~d~~~~~~N~ 207 (223)
+..+.+++|.+.+..-+
T Consensus 161 ~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 161 VPAIGDYVDFVNVMTYD 177 (210)
T ss_pred HHHHHhhCCEEEEeeec
Confidence 57788888988876544
No 69
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=31.63 E-value=2.6e+02 Score=23.77 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=27.8
Q ss_pred HHHHhhhhhcCCCcceeEEEecCCCcCCc--h---hHHHHHHHHhhcCCceeEEEec
Q 036688 120 DVVRKEAENCDCLQGFQVCHSLGGGTGSG--M---GTLLISKIREEYPDRMMMTFSV 171 (223)
Q Consensus 120 d~ir~~~E~cd~lqgf~i~~sl~GGtGsG--~---~s~lle~l~~~y~~~~~~~~~v 171 (223)
++|++.++ ..+||..+.|..|=||.- + ...+++++|..........|+|
T Consensus 158 eri~~i~~---~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI 211 (263)
T CHL00200 158 SRIQKIAR---AAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGI 211 (263)
T ss_pred HHHHHHHH---hCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCc
Confidence 45555555 557789998888877752 1 2334555665433333334444
No 70
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=31.10 E-value=2.8e+02 Score=25.21 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHh
Q 036688 114 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 159 (223)
Q Consensus 114 ~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~ 159 (223)
..+.-.+.|.+.+.. ..+++-|+.+...|+|+++.+.+++.|--
T Consensus 145 ~~~~Y~~~l~~~i~~--~~~~lkVvvd~~~G~~~~~~~~ll~~lG~ 188 (443)
T cd03089 145 ILPDYIDRLLSDIKL--GKRPLKVVVDAGNGAAGPIAPQLLEALGC 188 (443)
T ss_pred CHHHHHHHHHHhccc--ccCCCeEEEECCCCchHHHHHHHHHHCCC
Confidence 334444445444421 12799999999988888888888877643
No 71
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=31.08 E-value=64 Score=23.65 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=34.4
Q ss_pred ccccchhh-HHHHHHHHHHHhhhhhcCCCcceeEE-EecCCCcCCchhHHHHHHHHhhcCC
Q 036688 105 KGHYTEGA-ELIDAVLDVVRKEAENCDCLQGFQVC-HSLGGGTGSGMGTLLISKIREEYPD 163 (223)
Q Consensus 105 ~G~~~~g~-~~~~~~~d~ir~~~E~cd~lqgf~i~-~sl~GGtGsG~~s~lle~l~~~y~~ 163 (223)
.|++..-. ...+.+.+.|++..++... ..+.++ ||+|| +++..+.-.+....+.
T Consensus 36 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~itGHSLGG----alA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 36 SGFLDAAEDSLYDQILDALKELVEKYPD-YSIVITGHSLGG----ALASLAAADLASHGPS 91 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHSTT-SEEEEEEETHHH----HHHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccC-ccchhhccchHH----HHHHHHHHhhhhcccc
Confidence 35554444 5667778888887766654 444555 57765 4677777777776654
No 72
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=30.64 E-value=1.7e+02 Score=19.66 Aligned_cols=50 Identities=12% Similarity=0.308 Sum_probs=29.2
Q ss_pred HHHHHHhhhhhc--CCCcceeEEEecC----CCcCCchhHHHHHHHHhhcCCceeEEEe
Q 036688 118 VLDVVRKEAENC--DCLQGFQVCHSLG----GGTGSGMGTLLISKIREEYPDRMMMTFS 170 (223)
Q Consensus 118 ~~d~ir~~~E~c--d~lqgf~i~~sl~----GGtGsG~~s~lle~l~~~y~~~~~~~~~ 170 (223)
....++..++.| ...+.+.|+++.+ +|. +...+.+.|++.+....+..+.
T Consensus 11 A~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~ 66 (83)
T PF01713_consen 11 ALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYR 66 (83)
T ss_dssp HHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheee
Confidence 344455555554 3557788999887 443 6778888887655555555553
No 73
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=30.07 E-value=2.9e+02 Score=25.20 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 116 DAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 116 ~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
+.-.+.+++.+..-....+|.++.+...|+++++.+.+++.|-
T Consensus 158 ~~Y~~~l~~~id~~i~~~~lkVvvD~~~G~~~~~~~~ll~~lG 200 (448)
T PRK14315 158 GRYIEFAKRTLPRDLRLDGLRVVVDCANGAAYKVAPEALWELG 200 (448)
T ss_pred HHHHHHHHHhcccccccCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 3344444444431123469999999998888778887777764
No 74
>PLN03013 cysteine synthase
Probab=29.71 E-value=80 Score=29.05 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=36.3
Q ss_pred chhHHHHHHHHhhcCCceeEEEeccCCCCC-----Ccccchhhhh-HhhHHHHhhcCCEEEEeecHHHHHHHhh
Q 036688 148 GMGTLLISKIREEYPDRMMMTFSVFPSPKV-----SDTVVEPYNA-TLSVHQLVENADECMVLDNEALYDICFR 215 (223)
Q Consensus 148 G~~s~lle~l~~~y~~~~~~~~~v~P~~~~-----~~~~~~~~N~-~lsl~~l~e~~d~~~~~~N~~l~~~~~~ 215 (223)
|..+-+...|++..|+..++.+-..-++.. ....++-+.. .....-..+..|-++.++-+.....|++
T Consensus 292 GtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~ 365 (429)
T PLN03013 292 GTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQ 365 (429)
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHH
Confidence 667788899999989876665532111000 0001111111 1112222356688888888877777654
No 75
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=29.32 E-value=1.5e+02 Score=26.66 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=64.1
Q ss_pred CceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEE
Q 036688 90 DNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTF 169 (223)
Q Consensus 90 ~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~ 169 (223)
+|-++|+.|+..-|.-=+ ..-.++.+++.+.++.+.+.-...-|..+..--++|.+.|++..++-.+.-++
T Consensus 195 ~nPL~G~~GAs~vFGPQK-Gat~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l-------- 265 (378)
T COG1929 195 DNPLCGPQGASAVFGPQK-GATPEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL-------- 265 (378)
T ss_pred CCCCcCCCCceeeecCcc-CCCHHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc--------
Confidence 455566555554332111 11256777777888888887766666666666666777799988887776432
Q ss_pred eccCCCCCCcccchhhhhHhhHHHHhhcCCEEEE----eecHHH
Q 036688 170 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMV----LDNEAL 209 (223)
Q Consensus 170 ~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~----~~N~~l 209 (223)
.|. ++..=.++-+.+.++-||+||. +|++.+
T Consensus 266 --~~G-------i~iV~~~~~le~~v~daDLVITGEGr~D~Qs~ 300 (378)
T COG1929 266 --KSG-------IEIVLEATNLEDAVKDADLVITGEGRIDSQSL 300 (378)
T ss_pred --ccc-------HHHHHHHhCHHHhhccCCEEEeCCCccccccc
Confidence 121 2233345567788889999984 677665
No 76
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=29.10 E-value=58 Score=28.98 Aligned_cols=40 Identities=28% Similarity=0.505 Sum_probs=28.2
Q ss_pred hhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEE
Q 036688 125 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTF 169 (223)
Q Consensus 125 ~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~ 169 (223)
.++.+..+.++....+.|||+| ..+-..++ .||+...+.+
T Consensus 168 il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 168 ILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 4677778888999999988765 33334445 9998655554
No 77
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=29.06 E-value=46 Score=22.75 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=19.0
Q ss_pred cceeEEecCCCC---cccCcCCCCCcccccCCc
Q 036688 62 VPRAVLMDLEPG---TMDSIRSGPYGQIFRPDN 91 (223)
Q Consensus 62 ~pR~l~vD~e~~---~i~~i~~~~~~~l~~~~~ 91 (223)
++|-+|+|-+.+ ++|.-++-..+.+|+||+
T Consensus 6 tqrKvL~DP~SG~Yy~vd~P~Qp~~k~lfDPET 38 (75)
T PF15232_consen 6 TQRKVLQDPESGQYYVVDAPVQPKTKTLFDPET 38 (75)
T ss_pred cCccEeecCCCCCEEEEecCCCcceeeeecCCC
Confidence 466777776665 344444445577899984
No 78
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=28.74 E-value=3.6e+02 Score=24.59 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHH
Q 036688 114 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKI 157 (223)
Q Consensus 114 ~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l 157 (223)
..+.-.+.|.+.++- ..++++.|+.+...|+|+++.+.+++.|
T Consensus 145 ~~~~Y~~~l~~~i~~-~~i~~lkVvvd~~~Ga~~~~~~~ll~~l 187 (445)
T PRK09542 145 VLADYAAFLRSLVDL-SGIRPLKVAVDAGNGMGGHTVPAVLGGL 187 (445)
T ss_pred hHHHHHHHHHHhccc-ccCCCCEEEEECCCCchhHHHHHHHHhC
Confidence 344444445444421 2347999999998888877777777755
No 79
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=28.64 E-value=3e+02 Score=24.94 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=21.7
Q ss_pred CcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 132 LQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 132 lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
.+++.++.+...|+|+.+.+.+++.|-
T Consensus 163 ~~~~kVvvD~~nG~~~~~~~~ll~~lg 189 (429)
T PRK14322 163 LTGEMVSLDLANGATTTTAKEVFEFLG 189 (429)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHcC
Confidence 578899999998888777787777764
No 80
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=28.38 E-value=1.5e+02 Score=25.87 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=51.5
Q ss_pred CCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCC--CC-
Q 036688 101 NNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSP--KV- 177 (223)
Q Consensus 101 nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~--~~- 177 (223)
.||.-=|++.|.|++++.... ++.| ++++ ||| |-.+-+.+.||+.+|+..++. |-|.. ..
T Consensus 149 aN~~aH~~tT~~EI~~~~~g~----------~d~f--Vagv--GTG-GTitGvar~Lk~~~p~i~iv~--vdP~~S~~~~ 211 (300)
T COG0031 149 ANPEAHYETTGPEIWQQTDGK----------VDAF--VAGV--GTG-GTITGVARYLKERNPNVRIVA--VDPEGSVLLS 211 (300)
T ss_pred ccHHHHHhhhHHHHHHHhCCC----------CCEE--EEeC--Ccc-hhHHHHHHHHHhhCCCcEEEE--ECCCCCcccC
Confidence 344443456777766553222 3333 3333 343 557778899999999955544 44431 00
Q ss_pred -C--cccchh-hhhHhhHHHHhhcCCEEEEeecHHHHHHHhh
Q 036688 178 -S--DTVVEP-YNATLSVHQLVENADECMVLDNEALYDICFR 215 (223)
Q Consensus 178 -~--~~~~~~-~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~ 215 (223)
+ ...++= =+......-..+.-|-++-++++.-...+++
T Consensus 212 ~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~ 253 (300)
T COG0031 212 GGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARR 253 (300)
T ss_pred CCCCCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHH
Confidence 1 111111 1111112222345788888888888777754
No 81
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=28.08 E-value=3e+02 Score=24.99 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=21.5
Q ss_pred CcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 132 LQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 132 lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
.++|.|+.+...|+|+.+.+.+++.|.
T Consensus 162 ~~~lkIvid~~~G~~~~~~~~~l~~lg 188 (439)
T cd03087 162 GKGLKVVVDCGNGAGSLTTPYLLRELG 188 (439)
T ss_pred CCCCEEEEECCCCchHHHHHHHHHHcC
Confidence 579999999988887777777777764
No 82
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=27.30 E-value=4.9e+02 Score=23.85 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHh
Q 036688 115 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 159 (223)
Q Consensus 115 ~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~ 159 (223)
.+.-.+.|.+.+. ...++++.|..+...|+|+.+.+.+++.|+.
T Consensus 152 ~~~Yi~~l~~~id-~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~ 195 (456)
T PRK15414 152 RDAYVDHLFGYIN-VKNLTPLKLVINSGNGAAGPVVDAIEARFKA 195 (456)
T ss_pred HHHHHHHHHHhcc-cccCCCCEEEEECCCCcchhhHHHHHHHHHh
Confidence 3444444544442 1235799999999989888888888554444
No 83
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=26.96 E-value=3.6e+02 Score=23.09 Aligned_cols=88 Identities=7% Similarity=0.112 Sum_probs=47.8
Q ss_pred HHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCC-ceeEEEeccCCCCCCcccchhhhhHhhHHHH
Q 036688 116 DAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD-RMMMTFSVFPSPKVSDTVVEPYNATLSVHQL 194 (223)
Q Consensus 116 ~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~-~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l 194 (223)
+.+.+.|.+++++- .++|+.+----......---..+++.|+..+.. ..++++++.|...... ...+....-+..|
T Consensus 89 ~~fi~~iv~~l~~~-~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~~lsv~~~p~~~~~~--~~~~~~~~~~~~l 165 (313)
T cd02874 89 QRLINNILALAKKY-GYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYTLSTAVVPKTSADQ--FGNWSGAYDYAAI 165 (313)
T ss_pred HHHHHHHHHHHHHh-CCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccc--ccccccccCHHHH
Confidence 44555555565554 678988865332211111235578888888853 3456666666531110 0011122345678
Q ss_pred hhcCCEEEEeec
Q 036688 195 VENADECMVLDN 206 (223)
Q Consensus 195 ~e~~d~~~~~~N 206 (223)
.+++|.+++..-
T Consensus 166 ~~~vD~v~lm~Y 177 (313)
T cd02874 166 GKIVDFVVLMTY 177 (313)
T ss_pred HhhCCEEEEEEe
Confidence 888999887643
No 84
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=26.95 E-value=61 Score=24.61 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.0
Q ss_pred CCcccceeEEecCCCCcccCcC
Q 036688 58 GGRYVPRAVLMDLEPGTMDSIR 79 (223)
Q Consensus 58 ~~~~~pR~l~vD~e~~~i~~i~ 79 (223)
.+.|+||.+|+|-+.+++..+.
T Consensus 76 ~g~~vPtivFld~~g~vi~~i~ 97 (130)
T cd02960 76 DGQYVPRIMFVDPSLTVRADIT 97 (130)
T ss_pred cCcccCeEEEECCCCCCccccc
Confidence 4578999999999988876653
No 85
>PRK07564 phosphoglucomutase; Validated
Probab=26.72 E-value=3e+02 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=22.1
Q ss_pred CcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 132 LQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 132 lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
..+|.|+.+...|+|+.+.+.+++.|-
T Consensus 224 ~~~lkIvvD~~~G~~~~~~~~ll~~lG 250 (543)
T PRK07564 224 KAGLRLGVDPLGGATGPYWKAIAERYG 250 (543)
T ss_pred cCCceEEEecCCCCcHHHHHHHHHHcC
Confidence 458899999998888888888887764
No 86
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.49 E-value=41 Score=27.78 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=14.7
Q ss_pred CCCcCCchhHHHHHHHHh
Q 036688 142 GGGTGSGMGTLLISKIRE 159 (223)
Q Consensus 142 ~GGtGsG~~s~lle~l~~ 159 (223)
.=|||||+.+.++.+|..
T Consensus 78 EIGtGsGY~aAvla~l~~ 95 (209)
T COG2518 78 EIGTGSGYQAAVLARLVG 95 (209)
T ss_pred EECCCchHHHHHHHHHhC
Confidence 447899999999888765
No 87
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.36 E-value=2.7e+02 Score=23.91 Aligned_cols=67 Identities=25% Similarity=0.309 Sum_probs=40.4
Q ss_pred HHHHhhhhhcCCCcceeEEEecCCCcCCchh-----HHHHHHHHhhcCCceeEEEeccCCCCCCcccchhhhhHhhHHHH
Q 036688 120 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMG-----TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQL 194 (223)
Q Consensus 120 d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~-----s~lle~l~~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l 194 (223)
+++++.++ .-+||..+.|..|-||.=.. ..+++++|..-......-|+|--. -...++
T Consensus 161 ~rl~~i~~---~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~--------------e~~~~v 223 (265)
T COG0159 161 ERLKKIAE---AASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSP--------------EQAAQV 223 (265)
T ss_pred HHHHHHHH---hCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCH--------------HHHHHH
Confidence 45555555 45788999999999987433 455666776543333444554321 123455
Q ss_pred hhcCCEEEE
Q 036688 195 VENADECMV 203 (223)
Q Consensus 195 ~e~~d~~~~ 203 (223)
.+++|.+++
T Consensus 224 ~~~ADGVIV 232 (265)
T COG0159 224 AEAADGVIV 232 (265)
T ss_pred HHhCCeEEE
Confidence 666777765
No 88
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=26.30 E-value=2.2e+02 Score=25.28 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=21.8
Q ss_pred CcceeEEEecCCCcCCchhHHHHHHHHhhcCCc
Q 036688 132 LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 164 (223)
Q Consensus 132 lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~ 164 (223)
-++..++-+-.|||| -|.++..|.+.+...
T Consensus 20 ~~~~~~fv~G~~GtG---Ks~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTG---KSFLIKAIIDYLRSR 49 (364)
T ss_pred cCCcEEEEEcCCCCC---hhHHHHHHHHHhccc
Confidence 455666666677787 788888888877554
No 89
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=24.36 E-value=4.2e+02 Score=24.12 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=22.0
Q ss_pred CcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 132 LQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 132 lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
..++.|+.+...|+|+++.+.+++.|-
T Consensus 169 ~~~~kVvvD~~~G~~~~~~~~ll~~lG 195 (443)
T PRK10887 169 LRGLKIVVDCANGATYHIAPNVFRELG 195 (443)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHhC
Confidence 469999999988888777787887774
No 90
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=24.21 E-value=46 Score=28.54 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHH
Q 036688 117 AVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISK 156 (223)
Q Consensus 117 ~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~ 156 (223)
++++++|+.+.+-..+ +++|.|+|+.++..+.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 5677888877654433 2345677888877655
No 91
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=24.00 E-value=4.3e+02 Score=24.15 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 114 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 114 ~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
+.+.-.+.|+..+..--..+++.|+.+...|+++++.+.+++.|-
T Consensus 155 ~~~~Y~~~l~~~i~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~lG 199 (446)
T PRK14324 155 VIGRYIVHIKNSFPKDLTLKGLRIVLDTANGAAYKVAPTVFSELG 199 (446)
T ss_pred HHHHHHHHHHHhcCCccCCCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 334444555554431113568999999988887778887777763
No 92
>PRK09932 glycerate kinase II; Provisional
Probab=23.99 E-value=1.6e+02 Score=26.66 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=35.4
Q ss_pred cCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 88 RPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 88 ~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
+-+|-++|+.|+..-|+.=.- ..++..+.+...++++++....-.+..+...-+.|...|++..++..+.
T Consensus 193 DV~NPL~G~~GAa~vfgpQKG-a~~~~v~~Ld~~l~~~a~~~~~~~~~~~~~~pGaGAAGGlg~al~a~l~ 262 (381)
T PRK09932 193 DVDNPLVGARGAAAVFGPQKG-ATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLN 262 (381)
T ss_pred CCCCCCCCCcceeeEeCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCccchHHHHHHHHhC
Confidence 445667777776655542111 1234444444455555444432233444444455555577776655444
No 93
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=23.79 E-value=4.1e+02 Score=24.12 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 114 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 114 ~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
+.+...+.+++.+. .++++.|+.+...|+|+.+.+.+++.|-
T Consensus 156 ~~~~Y~~~l~~~~~---~~~~~kVvvD~~~G~~~~~~~~ll~~lG 197 (440)
T PRK14323 156 AERLYLDFLLSHAP---DLSGLKVALDCANGAAYRLAPKVFQAAG 197 (440)
T ss_pred HHHHHHHHHHHhcc---cccCCEEEEECCCchHHHHHHHHHHHcC
Confidence 34444555554432 4689999999988887777777776653
No 94
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=23.65 E-value=4.3e+02 Score=24.16 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 115 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 115 ~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
.+.-.+.|.+.+ |.-.+|.|..+...|+|+++.+.+++.|.
T Consensus 149 ~~~Y~~~l~~~~---~~~~~~kVvvD~~~G~~~~~~~~il~~lg 189 (449)
T PRK14321 149 KEEYIKAALEMI---KLENSYTVVVDSGNGAGSILSPYLQRELG 189 (449)
T ss_pred HHHHHHHHHHhc---CcCCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 333344444433 33478999999988887777777777764
No 95
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=23.59 E-value=4.3e+02 Score=23.91 Aligned_cols=43 Identities=9% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 115 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 115 ~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
.+.-.+.|+..+.. +...++.++.+...|+++++.+.+++.|-
T Consensus 151 ~~~Y~~~l~~~~~~-~~~~~lkVvvD~~nG~~~~~~~~ll~~lg 193 (434)
T cd05802 151 RGRYIEFLKSTFPK-DLLSGLKIVLDCANGAAYKVAPEVFRELG 193 (434)
T ss_pred HHHHHHHHHHhcCc-cccCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 34444555555431 11468999999998888788888888773
No 96
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=23.44 E-value=2.3e+02 Score=25.47 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCC
Q 036688 111 GAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 163 (223)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~ 163 (223)
.+.+.+...+||+...+.-+ .|+.|++||--||+.=.|+-.+.+++..
T Consensus 9 ~~nV~eA~~eRl~~if~~f~-----~VcVSFSGGKDS~lmLhL~~~~ar~~~~ 56 (407)
T COG3969 9 DENVLEAAIERLEWIFNTFP-----RVCVSFSGGKDSGLMLHLVAEVARENGR 56 (407)
T ss_pred cchHHHHHHHHHHHHHhcCC-----eEEEEecCCCchhHHHHHHHHHHHHhCC
Confidence 35567778888888776444 5678999999999876666666555544
No 97
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.26 E-value=1.1e+02 Score=26.47 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=28.9
Q ss_pred HHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCC
Q 036688 117 AVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 163 (223)
Q Consensus 117 ~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~ 163 (223)
-+...+|.+++.||++ ||-|.+.+++.+....+-
T Consensus 6 ~~r~~l~~Qak~C~s~-------------GSpf~a~lle~Va~~l~~ 39 (350)
T COG4427 6 HVRNALRSQAKVCDSL-------------GSPFTARLLELVAARLDL 39 (350)
T ss_pred HHHHHHHHHhhhhccc-------------CCHHHHHHHHHHHhhccc
Confidence 3566799999999998 789999999999888763
No 98
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=23.25 E-value=61 Score=18.13 Aligned_cols=9 Identities=44% Similarity=0.889 Sum_probs=5.8
Q ss_pred CCCcCCchh
Q 036688 142 GGGTGSGMG 150 (223)
Q Consensus 142 ~GGtGsG~~ 150 (223)
..|+|||+.
T Consensus 11 tSGSGSG~p 19 (30)
T smart00467 11 TSGSGSGLP 19 (30)
T ss_pred cCCCCCCch
Confidence 456777763
No 99
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=23.24 E-value=4.2e+02 Score=23.99 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=20.8
Q ss_pred CcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 132 LQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 132 lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
.+++.++.+.+.|+|+.+.+.+++.|-
T Consensus 160 ~~~~kvvvD~~nGa~~~~~~~ll~~Lg 186 (430)
T PRK14319 160 LSGIKIVVDVANGATYELNPYILEYFG 186 (430)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHcC
Confidence 468899999988877777777777664
No 100
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=23.11 E-value=37 Score=28.84 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=18.2
Q ss_pred HHhhcCCEEEEeecHHHHHHHhhccC
Q 036688 193 QLVENADECMVLDNEALYDICFRTLK 218 (223)
Q Consensus 193 ~l~e~~d~~~~~~N~~l~~~~~~~~~ 218 (223)
.|+-.+-++--|||+..++.+.|.|+
T Consensus 102 DlI~~Aqa~HWFdle~fy~~~~rvLR 127 (261)
T KOG3010|consen 102 DLITAAQAVHWFDLERFYKEAYRVLR 127 (261)
T ss_pred eeehhhhhHHhhchHHHHHHHHHHcC
Confidence 33444455566899999999987764
No 101
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=22.96 E-value=4.6e+02 Score=23.95 Aligned_cols=27 Identities=11% Similarity=0.352 Sum_probs=21.4
Q ss_pred CcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 132 LQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 132 lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
.+++.|+.+...|+++++.+.+++.|-
T Consensus 175 ~~~~kVvvD~~~Ga~~~~~~~il~~lg 201 (450)
T PRK14314 175 LKGLKIVLDCANGAAYKVAPAVFEELG 201 (450)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 568999999988887777777777664
No 102
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=22.86 E-value=69 Score=30.56 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=18.1
Q ss_pred CCCcCCchhHHHHHHHHhhcCCcee
Q 036688 142 GGGTGSGMGTLLISKIREEYPDRMM 166 (223)
Q Consensus 142 ~GGtGsG~~s~lle~l~~~y~~~~~ 166 (223)
.||+|| +|+.++..+....|++.+
T Consensus 256 TGagGS-iGsel~~qil~~~p~~i~ 279 (588)
T COG1086 256 TGGGGS-IGSELCRQILKFNPKEII 279 (588)
T ss_pred eCCCCc-HHHHHHHHHHhcCCCEEE
Confidence 456665 899999998888887644
No 103
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=22.59 E-value=2.1e+02 Score=25.80 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=37.0
Q ss_pred ccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHH
Q 036688 87 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 158 (223)
Q Consensus 87 ~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~ 158 (223)
-+-+|-++|..|+..-|+.=.- ...+..+.+...+++++.....-.+..+...-+.|.+.|++..++-.|.
T Consensus 191 ~DV~NPL~G~~GAa~vfgpQKG-a~~~~v~~ld~~l~~~a~~~~~~~~~d~~~~pGaGAAGGlg~al~a~lg 261 (375)
T TIGR00045 191 CDVTNPLCGENGAARVFGPQKG-ADPAMVEELDQALQHYARVIKRATGKDVRTIPGAGAAGGMGAGLLAFLG 261 (375)
T ss_pred ECCCCCCCCCCcceeeeCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCcccccCCCCCccccHHHHHHHHhC
Confidence 3556777887777766542111 1234444444455555544432234444444455555577766655443
No 104
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=22.55 E-value=5.4e+02 Score=23.73 Aligned_cols=79 Identities=13% Similarity=0.234 Sum_probs=49.5
Q ss_pred EEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCC---------------C---CCcccchhhhhHhhHHHHhhcC
Q 036688 137 VCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSP---------------K---VSDTVVEPYNATLSVHQLVENA 198 (223)
Q Consensus 137 i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~---------------~---~~~~~~~~~N~~lsl~~l~e~~ 198 (223)
++.+++|| |+-+-++..++.-=|+.+++.+-..-.+ . ..+..--+.=..-++.....+-
T Consensus 219 I~vpVGGG---GLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~ 295 (457)
T KOG1250|consen 219 IVVPVGGG---GLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLV 295 (457)
T ss_pred EEEecCCc---hhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcC
Confidence 45667765 8999999999998898888766432211 0 0011111111123355567778
Q ss_pred CEEEEeecHHHHHHHhhccC
Q 036688 199 DECMVLDNEALYDICFRTLK 218 (223)
Q Consensus 199 d~~~~~~N~~l~~~~~~~~~ 218 (223)
|-+++++-+++.-.|.+-+.
T Consensus 296 d~vvvV~~~ei~aaI~~l~e 315 (457)
T KOG1250|consen 296 DRVVVVEDDEIAAAILRLFE 315 (457)
T ss_pred ceEEEeccHHHHHHHHHHHH
Confidence 99999998888887766543
No 105
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=22.17 E-value=1.8e+02 Score=25.51 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=27.6
Q ss_pred HHHhhhhhcCCCcceeEE---EecCCCcCCchhHHHHHHHHhhcCCceeEEEec
Q 036688 121 VVRKEAENCDCLQGFQVC---HSLGGGTGSGMGTLLISKIREEYPDRMMMTFSV 171 (223)
Q Consensus 121 ~ir~~~E~cd~lqgf~i~---~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v 171 (223)
.|-+.+++. ++.++ |+..|| +|+.++|.|.+++| .++--+++
T Consensus 236 ~i~~~A~~t----~~IvT~EeHsi~GG----lGsaVAEvlse~~p-~~~~riGv 280 (312)
T COG3958 236 AILKAARET----GRIVTAEEHSIIGG----LGSAVAEVLSENGP-TPMRRIGV 280 (312)
T ss_pred HHHHHHhhc----CcEEEEecceeecc----hhHHHHHHHHhcCC-cceEEecC
Confidence 344455544 56776 678764 67888999999999 44434443
No 106
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=21.97 E-value=1.3e+02 Score=22.84 Aligned_cols=39 Identities=31% Similarity=0.544 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCceeEEEeccCCCC------CCcccchhhhhHhh
Q 036688 152 LLISKIREEYPDRMMMTFSVFPSPK------VSDTVVEPYNATLS 190 (223)
Q Consensus 152 ~lle~l~~~y~~~~~~~~~v~P~~~------~~~~~~~~~N~~ls 190 (223)
.+++.++..+|+..++.+++.|... .....+..||.++.
T Consensus 79 ~l~~~~~~~~p~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~ 123 (174)
T cd01841 79 DIIEQIREEFPNTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIK 123 (174)
T ss_pred HHHHHHHHHCCCCEEEEEeeCCcCcccccccCCHHHHHHHHHHHH
Confidence 3566777788888777777777532 11234566777644
No 107
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=21.75 E-value=79 Score=24.80 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=18.0
Q ss_pred cCCCcCCchhHHHHHHHHhhcCCc
Q 036688 141 LGGGTGSGMGTLLISKIREEYPDR 164 (223)
Q Consensus 141 l~GGtGsG~~s~lle~l~~~y~~~ 164 (223)
+.||+| |++..+++.|...+...
T Consensus 5 itGG~g-glg~~la~~La~~~~~~ 27 (181)
T PF08659_consen 5 ITGGLG-GLGQSLARWLAERGARR 27 (181)
T ss_dssp EETTTS-HHHHHHHHHHHHTT-SE
T ss_pred EECCcc-HHHHHHHHHHHHcCCCE
Confidence 357776 89999999999998554
No 108
>PRK12483 threonine dehydratase; Reviewed
Probab=21.71 E-value=4.6e+02 Score=24.78 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=44.3
Q ss_pred EEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCC------Cc--------ccch----hhhhHhhHHHHhhcC
Q 036688 137 VCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV------SD--------TVVE----PYNATLSVHQLVENA 198 (223)
Q Consensus 137 i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~------~~--------~~~~----~~N~~lsl~~l~e~~ 198 (223)
++...+|| |+.+-+...++...|+..++.+-....+.. +. +... ..-...++..+.++.
T Consensus 190 VvvpvGgG---GliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~v 266 (521)
T PRK12483 190 IFVPVGGG---GLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYV 266 (521)
T ss_pred EEEecCcc---HHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhC
Confidence 45555543 567777788888888876666543221100 00 0000 011124566667889
Q ss_pred CEEEEeecHHHHHHHhh
Q 036688 199 DECMVLDNEALYDICFR 215 (223)
Q Consensus 199 d~~~~~~N~~l~~~~~~ 215 (223)
|-++.++.+.+...+..
T Consensus 267 d~vv~Vse~ei~~ai~~ 283 (521)
T PRK12483 267 DEVVTVSTDELCAAIKD 283 (521)
T ss_pred CEEEEECHHHHHHHHHH
Confidence 99999999888777643
No 109
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=21.49 E-value=1.7e+02 Score=26.70 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCC
Q 036688 110 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSP 175 (223)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~ 175 (223)
.-++-.+.+.+.|++.+++||-+ .. .||++-|-.-.+-+.++++.+...+.-+++-|..
T Consensus 224 iv~Dd~~~l~~~i~~a~~~~Dvi---It----sGG~SvG~~D~v~~~l~~~lG~v~~~gia~kPGk 282 (404)
T COG0303 224 IVPDDPEALREAIEKALSEADVI---IT----SGGVSVGDADYVKAALERELGEVLFHGVAMKPGK 282 (404)
T ss_pred ccCCCHHHHHHHHHHhhhcCCEE---EE----eCCccCcchHhHHHHHHhcCCcEEEEeeeecCCC
Confidence 34556677888899999888855 22 3555556655555555545676677777788763
No 110
>PTZ00489 glutamate 5-kinase; Provisional
Probab=21.36 E-value=3.4e+02 Score=23.05 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=20.4
Q ss_pred HHhhcCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhc
Q 036688 157 IREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVEN 197 (223)
Q Consensus 157 l~~~y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~ 197 (223)
..+.+.+..+.+..+++....-....+..|+.-++..|.+.
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~ 127 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH 127 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC
Confidence 34444333344444444432222334455777777777655
No 111
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.18 E-value=75 Score=17.13 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=7.9
Q ss_pred CCCcCCchhHHH
Q 036688 142 GGGTGSGMGTLL 153 (223)
Q Consensus 142 ~GGtGsG~~s~l 153 (223)
+||.|+|++-.+
T Consensus 1 ~gg~g~gf~liv 12 (26)
T TIGR01732 1 GGGYGGGFALIV 12 (26)
T ss_pred CCccCcchHHHH
Confidence 467788877544
No 112
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=21.12 E-value=5.7e+02 Score=23.20 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=20.5
Q ss_pred CcceeEEEecCCCcCCchhHHHHHHH
Q 036688 132 LQGFQVCHSLGGGTGSGMGTLLISKI 157 (223)
Q Consensus 132 lqgf~i~~sl~GGtGsG~~s~lle~l 157 (223)
.+++.|..+...|+|+.+.+.+++.|
T Consensus 166 ~~~lkIvvd~~~G~~~~~~~~ll~~l 191 (441)
T cd05805 166 KSGLKVVIDYAYGVAGIVLPGLLSRL 191 (441)
T ss_pred hcCCeEEEECCCchHHHHHHHHHHHc
Confidence 46999999998888777777777665
No 113
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=20.29 E-value=1.1e+02 Score=28.69 Aligned_cols=70 Identities=19% Similarity=0.340 Sum_probs=41.5
Q ss_pred hhcCCCcceeEEEec--CCCcCCchhHHH--------------HHHHHhhcCCceeEEEeccCCCCC-Ccccchh--h--
Q 036688 127 ENCDCLQGFQVCHSL--GGGTGSGMGTLL--------------ISKIREEYPDRMMMTFSVFPSPKV-SDTVVEP--Y-- 185 (223)
Q Consensus 127 E~cd~lqgf~i~~sl--~GGtGsG~~s~l--------------le~l~~~y~~~~~~~~~v~P~~~~-~~~~~~~--~-- 185 (223)
++|...++..+..++ .||- +.|++ ++.|+..+|+.++++|.+.|-... +....+| |
T Consensus 54 ~~~~~~d~~ViS~D~L~yGGL---v~SR~~~~~~~~~~~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~yy~~ 130 (497)
T PF13552_consen 54 ENAPDADAAVISTDMLLYGGL---VPSRIHHLSLEEALERLERLRELKARNPNLPIYAFSTIMRTPPYSSSDEEPDYYAD 130 (497)
T ss_pred hccccCCEEEEEHHhhhhcCc---HhhcCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcHHHHH
Confidence 445566666877653 4542 34433 566788999999999998775321 1222222 2
Q ss_pred --hhHhhHHHHhhcCC
Q 036688 186 --NATLSVHQLVENAD 199 (223)
Q Consensus 186 --N~~lsl~~l~e~~d 199 (223)
..++.+..|....+
T Consensus 131 yg~~i~~~~~l~dk~~ 146 (497)
T PF13552_consen 131 YGRKIFRYSQLLDKEE 146 (497)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 44666666655444
No 114
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=20.22 E-value=5e+02 Score=23.12 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhhcCCceeEEEeccCCCCCC
Q 036688 111 GAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVS 178 (223)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~y~~~~~~~~~v~P~~~~~ 178 (223)
..+.+..+.+.|+..++ .+..+||.|+|+.. | =-.++..+..+-+ .+|..+++=+-.|....+
T Consensus 86 t~~dw~~la~~I~~~~~-~~~~~GiVVtHGTD--T-me~tA~~Lsl~l~-~~kPVVlTGAmrP~~~~~ 148 (349)
T TIGR00520 86 NEEVLLKLAKGINELLA-SDDYDGIVITHGTD--T-LEETAYFLDLTVK-SDKPVVIVGAMRPSTSVS 148 (349)
T ss_pred CHHHHHHHHHHHHHHhc-cCCCCEEEEeCCcc--c-HHHHHHHHHHHcC-CCCCEEEECCCCCCCCcC
Confidence 44556666666766553 24689999999554 1 1234555554444 366566666778875433
Done!