BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036689
MRTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPD
FMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN
IFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS
FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH
NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA
DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSF
CESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKF
DASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFG
CRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCP
KMNIFTTGELSTPPRVDVMYRNRGAPCWDGDLNTTIQQLHRVKLLDGSSSHSNTY

High Scoring Gene Products

Symbol, full name Information P value
RPS2
AT4G26090
protein from Arabidopsis thaliana 0.00023

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036689
        (595 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2005517 - symbol:RPS2 "RESISTANT TO P. SYRINGA...   132  0.00023   2


>TAIR|locus:2005517 [details] [associations]
            symbol:RPS2 "RESISTANT TO P. SYRINGAE 2" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0006952 "defense response" evidence=ISS;TAS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0043531 "ADP binding" evidence=IEA] [GO:0009626 "plant-type
            hypersensitive response" evidence=IMP] [GO:0016045 "detection of
            bacterium" evidence=RCA;IMP] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0042742 "defense response to bacterium" evidence=RCA;IMP]
            [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006612 "protein
            targeting to membrane" evidence=RCA] [GO:0009595 "detection of
            biotic stimulus" evidence=RCA] [GO:0009617 "response to bacterium"
            evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
            evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
            acid mediated signaling pathway" evidence=RCA] [GO:0009863
            "salicylic acid mediated signaling pathway" evidence=RCA]
            [GO:0009867 "jasmonic acid mediated signaling pathway"
            evidence=RCA] [GO:0009963 "positive regulation of flavonoid
            biosynthetic process" evidence=RCA] [GO:0010200 "response to
            chitin" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
            metabolic process" evidence=RCA] [GO:0010363 "regulation of
            plant-type hypersensitive response" evidence=RCA] [GO:0031347
            "regulation of defense response" evidence=RCA] [GO:0031348
            "negative regulation of defense response" evidence=RCA] [GO:0043069
            "negative regulation of programmed cell death" evidence=RCA]
            [GO:0043900 "regulation of multi-organism process" evidence=RCA]
            [GO:0045087 "innate immune response" evidence=RCA] [GO:0050776
            "regulation of immune response" evidence=RCA] [GO:0050832 "defense
            response to fungus" evidence=RCA] [GO:0051707 "response to other
            organism" evidence=RCA] InterPro:IPR000767 InterPro:IPR002182
            InterPro:IPR003593 Pfam:PF00931 PRINTS:PR00364 SMART:SM00382
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0016045
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564 GO:GO:0042742
            eggNOG:COG4886 GO:GO:0043531 EMBL:AL049483 GO:GO:0009626
            GO:GO:0017111 UniGene:At.46720 UniGene:At.69675 EMBL:U14158
            EMBL:U12860 EMBL:AF368301 EMBL:AF487797 EMBL:AF487798 EMBL:AF487799
            EMBL:AF487800 EMBL:AF487801 EMBL:AF487802 EMBL:AF487803
            EMBL:AF487804 EMBL:AF487805 EMBL:AF487806 EMBL:AF487807
            EMBL:AF487808 EMBL:AF487809 EMBL:AF487810 EMBL:AF487811
            EMBL:AF487812 EMBL:AF487813 EMBL:AF487814 EMBL:AF487815
            EMBL:AF487816 EMBL:AF487817 EMBL:AF487818 EMBL:AF487819
            EMBL:AF487820 EMBL:AF487821 EMBL:AF487822 EMBL:AF487823
            EMBL:AK117214 EMBL:BT005972 EMBL:U97217 IPI:IPI00547830 PIR:A54809
            RefSeq:NP_194339.1 UniGene:At.75226 PDB:2FT5 PDBsum:2FT5
            ProteinModelPortal:Q42484 SMR:Q42484 DIP:DIP-53465N IntAct:Q42484
            STRING:Q42484 EnsemblPlants:AT4G26090.1 GeneID:828715
            KEGG:ath:AT4G26090 TAIR:At4g26090 InParanoid:Q42484 KO:K13459
            OMA:AFNNDLE PhylomeDB:Q42484 ProtClustDB:CLSN2685902
            Genevestigator:Q42484 GermOnline:AT4G26090 Uniprot:Q42484
        Length = 909

 Score = 132 (51.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 43/160 (26%), Positives = 81/160 (50%)

Query:    22 KDVEYLCLDKSQDVKNV-LFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80
             K +++L +++  ++    L  L   G   L+ L +++  D   +V   +    +D  P L
Sbjct:   691 KHIQHLHVEECNELLYFNLPSLTNHG-RNLRRLSIKSCHDLEYLVTPADFE--NDWLPSL 747

Query:    81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN 140
             E L L++L  L R+  + +S      ++ I +  C++L N+   S  + LP+LE I + +
Sbjct:   748 EVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNV---SWVQKLPKLEVIELFD 804

Query:   141 CRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180
             CR I+E+ + + E  +++   + F  L TL    LPEL S
Sbjct:   805 CREIEEL-ISEHESPSVEDPTL-FPSLKTLRTRDLPELNS 842

 Score = 126 (49.4 bits), Expect = 0.00028, P = 0.00028
 Identities = 39/150 (26%), Positives = 74/150 (49%)

Query:   202 ISSLEDKLDISSPLFNEKVALSNLEVLEMNKV-NIEKIWHNQLPVAMFLCFQNLTRLILR 260
             I S  D   + +P   E   L +LEVL ++ + N+ ++W N +      C +N+  + + 
Sbjct:   724 IKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQD---CLRNIRCINIS 780

Query:   261 KCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVG 320
              C KLK +   S +     L+ +E+  C+ ++E+IS+  +     P  +FP +  LR   
Sbjct:   781 HCNKLKNV---SWVQKLPKLEVIELFDCREIEELISEHESPSVEDPT-LFPSLKTLRTRD 836

Query:   321 LPELKCLYPGMHTSEWPALKLLDVSACDQV 350
             LPEL  + P   + +   ++ L ++ C +V
Sbjct:   837 LPELNSILPSRFSFQ--KVETLVITNCPRV 864

 Score = 42 (19.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query:   251 FQNLTRLILRKCPKLK 266
             FQ +  L++  CP++K
Sbjct:   850 FQKVETLVITNCPRVK 865


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      595       554   0.00098  119 3  11 22  0.50    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  309 KB (2157 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  48.48u 0.12s 48.60t   Elapsed:  00:00:06
  Total cpu time:  48.48u 0.12s 48.60t   Elapsed:  00:00:06
  Start:  Mon May 20 18:34:17 2013   End:  Mon May 20 18:34:23 2013

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