BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036689
         (595 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3R8F|A Chain A, Protein-Dna Complex
 pdb|3R8F|B Chain B, Protein-Dna Complex
 pdb|3R8F|C Chain C, Protein-Dna Complex
 pdb|3R8F|D Chain D, Protein-Dna Complex
          Length = 324

 Score = 33.5 bits (75), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 65  VDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124
           ++ KER   D    I+E +  Y  +K+E I  D+ + ++ +E + I + LC ++ +  L+
Sbjct: 219 LERKERKERDKLMQIVEFVANYYAVKVEDILSDKRNKRT-SEARKIAMYLCRKVCSASLI 277

Query: 125 SAAKCLPRLERIAVINC-RNIQE 146
             A+   R +   VI+  R+++E
Sbjct: 278 EIARAFKRKDHTTVIHAIRSVEE 300


>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
 pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
 pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
 pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
          Length = 323

 Score = 33.1 bits (74), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 65  VDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124
           ++ KER   D    I+E +  Y  +K+E I  D+ + ++ +E + I + LC ++ +  L+
Sbjct: 218 LERKERKERDKLMQIVEFVANYYAVKVEDILSDKRNKRT-SEARKIAMYLCRKVCSASLI 276

Query: 125 SAAKCLPRLERIAVINC-RNIQE 146
             A+   R +   VI+  R+++E
Sbjct: 277 EIARAFKRKDHTTVIHAIRSVEE 299


>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
           Aeolicus Complexed With Nad And Lactic Acid
 pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
           Aeolicus Complexed With Nad And Lactic Acid
 pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
           Aeolicus Complexed With Nad And Lactic Acid
 pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
           Aeolicus Complexed With Nad And Lactic Acid
          Length = 334

 Score = 32.3 bits (72), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 214 PLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFL---CFQNLTRLILRKCPKLKYIFS 270
           P + E  AL +L  L++   ++ K+  N+L  A  +    +  LT  +L K P+LK I +
Sbjct: 14  PFYQE--ALKDLS-LKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKXPRLKLIHT 70

Query: 271 ASMLGSFEHLQHLEIRYCK 289
            S+        H+++ YCK
Sbjct: 71  RSV-----GFDHIDLDYCK 84


>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
          Length = 324

 Score = 32.0 bits (71), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 65  VDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124
           ++ KER   D    I+E +  Y  +K+E I  D+ + ++ +E + I   LC ++ +  L+
Sbjct: 219 LERKERKERDKLXQIVEFVANYYAVKVEDILSDKRNKRT-SEARKIAXYLCRKVCSASLI 277

Query: 125 SAAKCLPRLERIAVINC-RNIQE 146
             A+   R +   VI+  R+++E
Sbjct: 278 EIARAFKRKDHTTVIHAIRSVEE 300


>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
          Length = 592

 Score = 28.9 bits (63), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 6/48 (12%)

Query: 258 ILRKCPKLKYIFSASMLGSFEHLQHLEI--RYCKGLQEIISKEGADDQ 303
           +++KCP L+ + + +++G     + LE+  +YCK L+ +  + GAD+Q
Sbjct: 313 LIQKCPNLEVLETRNVIGD----RGLEVLAQYCKQLKRLRIERGADEQ 356


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,615,197
Number of Sequences: 62578
Number of extensions: 599773
Number of successful extensions: 1211
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 11
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)