Query 036689
Match_columns 595
No_of_seqs 206 out of 2481
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.4E-27 7.3E-32 273.6 23.8 300 2-354 121-421 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.8E-27 6.1E-32 274.2 23.1 486 3-565 73-583 (968)
3 PLN03210 Resistant to P. syrin 99.9 5.5E-22 1.2E-26 230.6 25.0 355 12-488 548-910 (1153)
4 KOG4194 Membrane glycoprotein 99.9 1.4E-23 3.1E-28 209.2 4.5 372 47-562 77-448 (873)
5 PLN03210 Resistant to P. syrin 99.9 1.9E-21 4E-26 226.1 22.5 386 45-564 555-964 (1153)
6 KOG4194 Membrane glycoprotein 99.8 1.1E-20 2.3E-25 188.8 7.3 375 46-565 49-428 (873)
7 KOG0444 Cytoskeletal regulator 99.7 2.8E-20 6E-25 187.1 -4.4 369 20-545 5-378 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 7.4E-20 1.6E-24 184.0 -3.4 341 101-565 28-374 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 1.8E-19 3.9E-24 172.7 -9.7 461 18-565 64-540 (565)
10 KOG0618 Serine/threonine phosp 99.7 1.4E-18 3.1E-23 182.7 -4.7 419 16-542 39-489 (1081)
11 KOG0618 Serine/threonine phosp 99.6 2.9E-17 6.2E-22 173.0 -3.6 225 222-515 263-488 (1081)
12 KOG0472 Leucine-rich repeat pr 99.5 2.5E-17 5.3E-22 158.2 -10.7 410 15-540 84-539 (565)
13 KOG4341 F-box protein containi 99.4 4.6E-15 9.9E-20 143.7 -5.5 324 48-512 138-461 (483)
14 PRK15387 E3 ubiquitin-protein 99.4 2.7E-12 5.9E-17 139.7 14.5 98 223-355 302-399 (788)
15 PRK15387 E3 ubiquitin-protein 99.4 3.1E-12 6.8E-17 139.3 14.6 96 224-354 223-318 (788)
16 KOG4341 F-box protein containi 99.4 3.2E-15 7E-20 144.8 -7.8 97 444-544 345-441 (483)
17 PRK15370 E3 ubiquitin-protein 99.2 2.9E-11 6.2E-16 132.6 9.1 244 224-564 179-426 (754)
18 PRK15370 E3 ubiquitin-protein 99.2 1.1E-10 2.3E-15 128.1 10.8 252 21-398 177-428 (754)
19 KOG4658 Apoptotic ATPase [Sign 98.9 7.5E-10 1.6E-14 123.5 4.8 100 444-548 746-848 (889)
20 KOG4237 Extracellular matrix p 98.8 1.4E-10 3E-15 112.2 -5.6 87 381-481 270-356 (498)
21 cd00116 LRR_RI Leucine-rich re 98.8 3.2E-10 7E-15 114.6 -3.3 120 222-348 164-289 (319)
22 cd00116 LRR_RI Leucine-rich re 98.8 1.6E-09 3.5E-14 109.5 1.3 270 3-322 2-289 (319)
23 KOG0617 Ras suppressor protein 98.7 5.7E-10 1.2E-14 95.7 -2.9 160 46-296 31-190 (264)
24 KOG4237 Extracellular matrix p 98.7 1E-09 2.2E-14 106.3 -2.5 277 224-563 68-356 (498)
25 KOG4658 Apoptotic ATPase [Sign 98.7 1.4E-08 3E-13 113.5 4.5 132 219-355 713-847 (889)
26 KOG0617 Ras suppressor protein 98.6 2.5E-09 5.4E-14 91.9 -3.6 146 4-175 38-183 (264)
27 KOG3207 Beta-tubulin folding c 98.5 1.1E-08 2.4E-13 100.6 -0.7 238 52-346 97-335 (505)
28 KOG3207 Beta-tubulin folding c 98.5 7.6E-09 1.7E-13 101.7 -2.1 188 220-482 118-312 (505)
29 KOG2120 SCF ubiquitin ligase, 98.4 7.6E-09 1.6E-13 96.7 -5.0 69 75-146 207-275 (419)
30 KOG2120 SCF ubiquitin ligase, 98.3 3.2E-08 6.9E-13 92.6 -4.9 187 106-348 186-374 (419)
31 PF14580 LRR_9: Leucine-rich r 98.2 7.5E-07 1.6E-11 79.9 3.4 132 20-175 17-150 (175)
32 KOG1947 Leucine rich repeat pr 98.2 4.1E-08 9E-13 105.2 -5.7 123 250-399 186-309 (482)
33 PRK15386 type III secretion pr 98.1 9E-06 1.9E-10 82.0 8.8 39 312-354 73-111 (426)
34 PF14580 LRR_9: Leucine-rich r 98.1 2.3E-06 5.1E-11 76.8 3.8 110 45-177 16-125 (175)
35 KOG1947 Leucine rich repeat pr 98.1 2.8E-07 6.1E-12 98.8 -2.6 66 222-291 242-308 (482)
36 KOG1259 Nischarin, modulator o 98.1 1.9E-06 4.1E-11 80.9 2.3 83 222-322 328-410 (490)
37 PF13855 LRR_8: Leucine rich r 98.0 1.9E-05 4.1E-10 57.8 5.7 58 79-141 2-59 (61)
38 PF13855 LRR_8: Leucine rich r 97.9 1.8E-05 3.8E-10 58.0 5.0 60 48-116 1-60 (61)
39 KOG1259 Nischarin, modulator o 97.9 7.9E-06 1.7E-10 76.9 3.8 229 274-540 178-410 (490)
40 PRK15386 type III secretion pr 97.8 0.00011 2.5E-09 74.2 9.8 32 503-539 156-187 (426)
41 KOG3665 ZYG-1-like serine/thre 97.6 1.9E-05 4.2E-10 86.4 1.9 140 20-174 120-259 (699)
42 KOG2982 Uncharacterized conser 97.6 1.1E-05 2.4E-10 76.0 -1.2 70 251-329 198-267 (418)
43 KOG0532 Leucine-rich repeat (L 97.5 6.3E-06 1.4E-10 84.2 -4.0 197 20-289 73-271 (722)
44 COG4886 Leucine-rich repeat (L 97.5 0.00015 3.2E-09 75.6 5.7 82 223-324 209-290 (394)
45 KOG1909 Ran GTPase-activating 97.3 2E-05 4.3E-10 76.0 -2.7 244 3-322 34-309 (382)
46 KOG2982 Uncharacterized conser 97.3 7.6E-05 1.7E-09 70.4 0.5 167 220-422 94-260 (418)
47 COG4886 Leucine-rich repeat (L 97.3 0.0003 6.4E-09 73.4 4.8 106 222-349 115-221 (394)
48 PLN03150 hypothetical protein; 97.1 0.00087 1.9E-08 73.7 7.3 89 49-148 419-507 (623)
49 KOG0532 Leucine-rich repeat (L 97.1 3.5E-05 7.6E-10 78.9 -3.5 178 15-262 91-270 (722)
50 KOG3665 ZYG-1-like serine/thre 97.1 0.00016 3.4E-09 79.4 0.9 37 250-287 248-284 (699)
51 KOG1859 Leucine-rich repeat pr 96.8 6.7E-05 1.4E-09 79.0 -4.7 36 101-140 183-218 (1096)
52 KOG1909 Ran GTPase-activating 96.6 8.4E-05 1.8E-09 71.8 -5.2 124 16-143 86-225 (382)
53 KOG1644 U2-associated snRNP A' 96.6 0.0027 5.8E-08 57.0 4.3 110 18-140 37-149 (233)
54 KOG1644 U2-associated snRNP A' 96.5 0.0044 9.6E-08 55.7 5.4 112 47-177 41-152 (233)
55 PLN03150 hypothetical protein; 96.5 0.0036 7.8E-08 68.9 5.9 113 23-147 419-531 (623)
56 PF12799 LRR_4: Leucine Rich r 96.5 0.0053 1.2E-07 41.2 4.5 34 105-141 1-34 (44)
57 KOG0531 Protein phosphatase 1, 96.4 0.00058 1.3E-08 71.5 -1.0 80 46-140 70-149 (414)
58 KOG1859 Leucine-rich repeat pr 96.3 0.00014 3E-09 76.8 -6.4 112 15-143 180-291 (1096)
59 PF12799 LRR_4: Leucine Rich r 96.1 0.0065 1.4E-07 40.8 3.2 39 22-64 1-39 (44)
60 KOG3864 Uncharacterized conser 95.5 0.0015 3.3E-08 58.6 -2.4 60 502-561 124-184 (221)
61 KOG2123 Uncharacterized conser 95.1 0.0037 7.9E-08 58.9 -1.2 101 444-559 18-123 (388)
62 KOG2739 Leucine-rich acidic nu 94.8 0.019 4.2E-07 53.8 2.7 89 45-143 40-128 (260)
63 KOG2123 Uncharacterized conser 94.6 0.0016 3.5E-08 61.2 -5.0 103 222-343 18-123 (388)
64 KOG0531 Protein phosphatase 1, 94.5 0.0092 2E-07 62.5 -0.3 105 221-348 93-197 (414)
65 KOG3864 Uncharacterized conser 94.3 0.0048 1E-07 55.5 -2.6 68 274-349 121-188 (221)
66 KOG2739 Leucine-rich acidic nu 94.2 0.026 5.6E-07 53.0 1.9 118 15-142 35-154 (260)
67 PF00560 LRR_1: Leucine Rich R 89.8 0.19 4.1E-06 27.9 1.2 20 530-550 1-20 (22)
68 PF13504 LRR_7: Leucine rich r 89.8 0.22 4.7E-06 25.7 1.3 17 529-546 1-17 (17)
69 PF13306 LRR_5: Leucine rich r 87.5 2.4 5.2E-05 35.8 7.2 103 441-561 8-111 (129)
70 KOG4579 Leucine-rich repeat (L 85.0 0.049 1.1E-06 46.0 -4.3 103 23-140 28-132 (177)
71 PF13306 LRR_5: Leucine rich r 84.9 4.6 9.9E-05 34.0 7.7 81 45-139 9-89 (129)
72 smart00367 LRR_CC Leucine-rich 83.9 0.66 1.4E-05 26.9 1.3 18 104-121 1-18 (26)
73 smart00367 LRR_CC Leucine-rich 83.8 0.58 1.3E-05 27.1 1.0 17 528-544 1-17 (26)
74 KOG4579 Leucine-rich repeat (L 81.3 0.22 4.8E-06 42.2 -1.9 68 444-523 52-119 (177)
75 COG5238 RNA1 Ran GTPase-activa 67.8 1.9 4.1E-05 41.1 0.3 184 101-321 88-282 (388)
76 smart00370 LRR Leucine-rich re 62.8 4.8 0.0001 23.1 1.3 16 223-238 2-17 (26)
77 smart00369 LRR_TYP Leucine-ric 62.8 4.8 0.0001 23.1 1.3 16 223-238 2-17 (26)
78 PF13516 LRR_6: Leucine Rich r 37.8 22 0.00048 19.7 1.3 13 384-396 1-13 (24)
79 smart00365 LRR_SD22 Leucine-ri 32.3 37 0.0008 19.7 1.6 16 223-238 2-17 (26)
80 smart00364 LRR_BAC Leucine-ric 26.3 42 0.0009 19.6 1.1 17 105-122 2-18 (26)
81 KOG3763 mRNA export factor TAP 24.4 38 0.00082 36.0 1.3 84 250-343 216-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.4e-27 Score=273.56 Aligned_cols=300 Identities=17% Similarity=0.084 Sum_probs=158.6
Q ss_pred ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689 2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 81 (595)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 81 (595)
|.|+|+.|.+.-. -..+.+++|++|++++|......+..+ +.+++|++|++++| .+....+. .+..+++|+
T Consensus 121 ~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n-~l~~~~p~-----~~~~l~~L~ 191 (968)
T PLN00113 121 RYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGN-VLVGKIPN-----SLTNLTSLE 191 (968)
T ss_pred CEEECcCCccccc-cCccccCCCCEEECcCCcccccCChHH--hcCCCCCEEECccC-cccccCCh-----hhhhCcCCC
Confidence 4566666543211 111367889999999887755554445 78899999999888 44433233 456788899
Q ss_pred EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689 82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK 161 (595)
Q Consensus 82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 161 (595)
+|+++++ .+... .+..++.+++|++|++++|. +....+ ..++++++|++|++++|.....++. ..
T Consensus 192 ~L~L~~n-~l~~~--~p~~l~~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~----------~l 256 (968)
T PLN00113 192 FLTLASN-QLVGQ--IPRELGQMKSLKWIYLGYNN-LSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPS----------SL 256 (968)
T ss_pred eeeccCC-CCcCc--CChHHcCcCCccEEECcCCc-cCCcCC-hhHhcCCCCCEEECcCceeccccCh----------hH
Confidence 9999886 44332 13346788889999998864 443332 6678888999999988654444432 23
Q ss_pred ccccccceEecCCCCCcccccccc-ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecc
Q 036689 162 IEFGQLSTLCLGSLPELTSFCCEV-KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH 240 (595)
Q Consensus 162 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 240 (595)
..+++|+.|+++++.-...++... ....+..+....|.-. .. .-.....+++|+.|++++|.+...
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--------~~---~p~~~~~l~~L~~L~l~~n~~~~~-- 323 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS--------GE---IPELVIQLQNLEILHLFSNNFTGK-- 323 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec--------cC---CChhHcCCCCCcEEECCCCccCCc--
Confidence 446778888777654332222111 0011111111111000 00 000112355666666666644322
Q ss_pred cCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecC
Q 036689 241 NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVG 320 (595)
Q Consensus 241 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 320 (595)
.|..+ ..+++|+.|++++|..... .+. .++.+++|+.|++++|. +....+.... .+++|+.|++.+
T Consensus 324 --~~~~~-~~l~~L~~L~L~~n~l~~~-~p~-~l~~~~~L~~L~Ls~n~-l~~~~p~~~~--------~~~~L~~L~l~~ 389 (968)
T PLN00113 324 --IPVAL-TSLPRLQVLQLWSNKFSGE-IPK-NLGKHNNLTVLDLSTNN-LTGEIPEGLC--------SSGNLFKLILFS 389 (968)
T ss_pred --CChhH-hcCCCCCEEECcCCCCcCc-CCh-HHhCCCCCcEEECCCCe-eEeeCChhHh--------CcCCCCEEECcC
Confidence 13332 4556666666665532222 222 24556666666666665 4332221111 145566666655
Q ss_pred CCCcccccCCCccccCcccceeeecCCCCccccc
Q 036689 321 LPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD 354 (595)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 354 (595)
+.....++... ..+++|+.|++.+|.....+|
T Consensus 390 n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 390 NSLEGEIPKSL--GACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CEecccCCHHH--hCCCCCCEEECcCCEeeeECC
Confidence 44222222211 125666666666655433333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2.8e-27 Score=274.19 Aligned_cols=486 Identities=16% Similarity=0.104 Sum_probs=257.6
Q ss_pred eecccccccc-cCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689 3 TLKLKFNSVS-ICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 81 (595)
Q Consensus 3 ~l~l~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 81 (595)
.|+|..+.++ ..+..++.+++|++|+|+++.....++..+ ...+++|++|++++| .++... ....+++|+
T Consensus 73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n-~l~~~~-------p~~~l~~L~ 143 (968)
T PLN00113 73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNN-NFTGSI-------PRGSIPNLE 143 (968)
T ss_pred EEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCC-cccccc-------CccccCCCC
Confidence 4555555432 125556688999999999987755554443 258899999999988 454321 224578899
Q ss_pred EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689 82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK 161 (595)
Q Consensus 82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 161 (595)
+|+++++ .+... .+..++.+++|++|++++|......| ..+.++++|++|++++|.....+|. ..
T Consensus 144 ~L~Ls~n-~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~----------~l 208 (968)
T PLN00113 144 TLDLSNN-MLSGE--IPNDIGSFSSLKVLDLGGNVLVGKIP--NSLTNLTSLEFLTLASNQLVGQIPR----------EL 208 (968)
T ss_pred EEECcCC-ccccc--CChHHhcCCCCCEEECccCcccccCC--hhhhhCcCCCeeeccCCCCcCcCCh----------HH
Confidence 9999886 44422 13347788889999998864333333 5677888899998888765444442 23
Q ss_pred ccccccceEecCCCCCcccccccc-ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecc
Q 036689 162 IEFGQLSTLCLGSLPELTSFCCEV-KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH 240 (595)
Q Consensus 162 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 240 (595)
..+++|+.|+++++.-....+... ....+..+....|.-. .. .-.....+++|+.|++++|.+...
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--------~~---~p~~l~~l~~L~~L~L~~n~l~~~-- 275 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT--------GP---IPSSLGNLKNLQYLFLYQNKLSGP-- 275 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec--------cc---cChhHhCCCCCCEEECcCCeeecc--
Confidence 345667777766654332222211 1111111111111000 00 001122355566666665544322
Q ss_pred cCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecC
Q 036689 241 NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVG 320 (595)
Q Consensus 241 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 320 (595)
+|..+ ..+++|++|++++|. +....+. .+.++++|++|++++|. +....+.... .+++|+.|++.+
T Consensus 276 --~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~-~~~~l~~L~~L~l~~n~-~~~~~~~~~~--------~l~~L~~L~L~~ 341 (968)
T PLN00113 276 --IPPSI-FSLQKLISLDLSDNS-LSGEIPE-LVIQLQNLEILHLFSNN-FTGKIPVALT--------SLPRLQVLQLWS 341 (968)
T ss_pred --CchhH-hhccCcCEEECcCCe-eccCCCh-hHcCCCCCcEEECCCCc-cCCcCChhHh--------cCCCCCEEECcC
Confidence 13332 345566666665542 2222222 23555666666665554 3322211111 155566666655
Q ss_pred CCCcccccCCCccccCcccceeeecCCCCccccccccccccC-CCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCee
Q 036689 321 LPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCE-SSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRM 399 (595)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 399 (595)
+.....++... ..+++|+.|+++++.....+|..+..... ....... ..-.......+..+++|+.|++++|+..+
T Consensus 342 n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~-n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 342 NKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS-NSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC-CEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 44322222211 11455555555554433223321111000 0000000 00000011112334455555555554332
Q ss_pred ccCCC----------------------CCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCC
Q 036689 400 IWHGD----------------------FPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKK 457 (595)
Q Consensus 400 ~~~~~----------------------~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~ 457 (595)
..+.. .....+++|+.|++. .| .+....+ .....++|+.|++++| .
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~---------~n-~~~~~~p-~~~~~~~L~~L~ls~n-~ 486 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA---------RN-KFFGGLP-DSFGSKRLENLDLSRN-Q 486 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc---------Cc-eeeeecC-cccccccceEEECcCC-c
Confidence 21110 011233445555543 22 2332333 2223567888888875 4
Q ss_pred CcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEe
Q 036689 458 LTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVV 537 (595)
Q Consensus 458 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~ 537 (595)
+....+ ..+..+++|++|++++|.-...++.... .+++|+.|++++|.-...+|... ..+++|+.|+++
T Consensus 487 l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--------~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls 555 (968)
T PLN00113 487 FSGAVP-RKLGSLSELMQLKLSENKLSGEIPDELS--------SCKKLVSLDLSHNQLSGQIPASF--SEMPVLSQLDLS 555 (968)
T ss_pred cCCccC-hhhhhhhccCEEECcCCcceeeCChHHc--------CccCCCEEECCCCcccccCChhH--hCcccCCEEECC
Confidence 444333 3456788899999988874334444333 38899999999975444555444 348999999999
Q ss_pred CCCCccccCCCCCCCCCcceEEeccCCC
Q 036689 538 GCPKMNIFTTGELSTPPRVDVMYRNRGA 565 (595)
Q Consensus 538 ~C~~l~~lp~~~~~~~~L~~l~i~~~~~ 565 (595)
+|.....+|..+.++++|+++++++|..
T Consensus 556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred CCcccccCChhHhcCcccCEEeccCCcc
Confidence 9987778999998899999999997654
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.5e-22 Score=230.55 Aligned_cols=355 Identities=18% Similarity=0.243 Sum_probs=252.4
Q ss_pred ccCcccccccccccEEEeccCCCC------cccccccccccc-CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEe
Q 036689 12 SICSKKLQGIKDVEYLCLDKSQDV------KNVLFDLDREGF-LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLN 84 (595)
Q Consensus 12 ~~~~~~~~~l~~L~~L~L~~~~~~------~~~~~~~~~~~l-~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~ 84 (595)
.+++++|..+.+|+.|.+.....- ..++..+ ..+ ++|+.|++.++ .++.++.. ..+.+|++|+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~--~~lp~~Lr~L~~~~~-~l~~lP~~-------f~~~~L~~L~ 617 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF--DYLPPKLRLLRWDKY-PLRCMPSN-------FRPENLVKLQ 617 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcch--hhcCcccEEEEecCC-CCCCCCCc-------CCccCCcEEE
Confidence 455777889999999999765321 1122222 334 46999999988 56666322 2468999999
Q ss_pred ccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccc
Q 036689 85 LYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEF 164 (595)
Q Consensus 85 l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 164 (595)
+.++ +++.+|.+ +..+++|++|++++|..++.+| .++.+++|++|++++|..+..+|. .+..+
T Consensus 618 L~~s-~l~~L~~~---~~~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~----------si~~L 680 (1153)
T PLN03210 618 MQGS-KLEKLWDG---VHSLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSLVELPS----------SIQYL 680 (1153)
T ss_pred CcCc-cccccccc---cccCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCccccch----------hhhcc
Confidence 9995 78887554 6789999999999988888764 367899999999999999888773 34568
Q ss_pred cccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccc-cceeecccCC
Q 036689 165 GQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKV-NIEKIWHNQL 243 (595)
Q Consensus 165 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~ 243 (595)
++|+.|++++|..+..++.+. ++++|+.|++++| .+..+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-----------------------------------~l~sL~~L~Lsgc~~L~~~----- 720 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-----------------------------------NLKSLYRLNLSGCSRLKSF----- 720 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-----------------------------------CCCCCCEEeCCCCCCcccc-----
Confidence 899999999999988866421 4788999999998 55544
Q ss_pred CccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCC
Q 036689 244 PVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPE 323 (595)
Q Consensus 244 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 323 (595)
|. ...+|+.|++.++ .++.++.. ..+++|++|.+.++. ...+... ...........+++|+.|++++|+.
T Consensus 721 p~----~~~nL~~L~L~~n-~i~~lP~~---~~l~~L~~L~l~~~~-~~~l~~~-~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 721 PD----ISTNISWLDLDET-AIEEFPSN---LRLENLDELILCEMK-SEKLWER-VQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred cc----ccCCcCeeecCCC-cccccccc---ccccccccccccccc-hhhcccc-ccccchhhhhccccchheeCCCCCC
Confidence 53 2578999999875 46665432 367888888887765 2222110 0000000011257899999999988
Q ss_pred cccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCC
Q 036689 324 LKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHG 403 (595)
Q Consensus 324 l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 403 (595)
+..+|.... .+++|+.|++++|..++.+|. ...+++|++|++++|..+..++.
T Consensus 791 l~~lP~si~--~L~~L~~L~Ls~C~~L~~LP~-------------------------~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 791 LVELPSSIQ--NLHKLEHLEIENCINLETLPT-------------------------GINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred ccccChhhh--CCCCCCEEECCCCCCcCeeCC-------------------------CCCccccCEEECCCCCccccccc
Confidence 887776533 389999999999999998887 23688999999999987654322
Q ss_pred CCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCccc
Q 036689 404 DFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRA 483 (595)
Q Consensus 404 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 483 (595)
...+|+.|++. .+.+..++. ++..+++|+.|++++|++++.++. ....++.|+.+++++|..
T Consensus 844 -----~~~nL~~L~Ls----------~n~i~~iP~-si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 844 -----ISTNISDLNLS----------RTGIEEVPW-WIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGA 905 (1153)
T ss_pred -----cccccCEeECC----------CCCCccChH-HHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcc
Confidence 23567777773 344555543 667788888888888888887643 235678888888888887
Q ss_pred ccchh
Q 036689 484 MTQVV 488 (595)
Q Consensus 484 l~~i~ 488 (595)
++.+.
T Consensus 906 L~~~~ 910 (1153)
T PLN03210 906 LTEAS 910 (1153)
T ss_pred ccccc
Confidence 76553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.4e-23 Score=209.16 Aligned_cols=372 Identities=18% Similarity=0.179 Sum_probs=251.2
Q ss_pred cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689 47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA 126 (595)
Q Consensus 47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~ 126 (595)
.+.-+.|++++| .+..+... ++..+|+|+++.+.++ .++.++.. .....+|+.|+|.+ +.++++.. ..
T Consensus 77 p~~t~~LdlsnN-kl~~id~~-----~f~nl~nLq~v~l~~N-~Lt~IP~f---~~~sghl~~L~L~~-N~I~sv~s-e~ 144 (873)
T KOG4194|consen 77 PSQTQTLDLSNN-KLSHIDFE-----FFYNLPNLQEVNLNKN-ELTRIPRF---GHESGHLEKLDLRH-NLISSVTS-EE 144 (873)
T ss_pred ccceeeeecccc-ccccCcHH-----HHhcCCcceeeeeccc-hhhhcccc---cccccceeEEeeec-cccccccH-HH
Confidence 345667999888 66655322 5678899999999984 88887443 45567799999998 67776654 67
Q ss_pred hhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccccc
Q 036689 127 AKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLE 206 (595)
Q Consensus 127 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (595)
++.++.|+.||++. +.+.+++.. +|+
T Consensus 145 L~~l~alrslDLSr-N~is~i~~~-----------------------------sfp------------------------ 170 (873)
T KOG4194|consen 145 LSALPALRSLDLSR-NLISEIPKP-----------------------------SFP------------------------ 170 (873)
T ss_pred HHhHhhhhhhhhhh-chhhcccCC-----------------------------CCC------------------------
Confidence 78899999999998 666665421 111
Q ss_pred ccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEee
Q 036689 207 DKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIR 286 (595)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~ 286 (595)
.-.++++|++++|.++.+..+.| ..+.+|..|.|++ +.++.++.. .+.++++|+.|++.
T Consensus 171 --------------~~~ni~~L~La~N~It~l~~~~F-----~~lnsL~tlkLsr-NrittLp~r-~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 171 --------------AKVNIKKLNLASNRITTLETGHF-----DSLNSLLTLKLSR-NRITTLPQR-SFKRLPKLESLDLN 229 (873)
T ss_pred --------------CCCCceEEeeccccccccccccc-----cccchheeeeccc-CcccccCHH-Hhhhcchhhhhhcc
Confidence 23467777777777777744433 3566777777775 456665443 45777788888777
Q ss_pred cccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCC
Q 036689 287 YCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEE 366 (595)
Q Consensus 287 ~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 366 (595)
.+. +..+-...+.+ +++|+.|.+..+ .+..+..|+.. .+.++++|++..+. +..+..+
T Consensus 230 rN~-irive~ltFqg--------L~Sl~nlklqrN-~I~kL~DG~Fy-~l~kme~l~L~~N~-l~~vn~g---------- 287 (873)
T KOG4194|consen 230 RNR-IRIVEGLTFQG--------LPSLQNLKLQRN-DISKLDDGAFY-GLEKMEHLNLETNR-LQAVNEG---------- 287 (873)
T ss_pred ccc-eeeehhhhhcC--------chhhhhhhhhhc-CcccccCccee-eecccceeecccch-hhhhhcc----------
Confidence 776 65553323333 777777777663 34444333322 15677777776542 3333331
Q ss_pred CCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCC
Q 036689 367 DKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRN 446 (595)
Q Consensus 367 ~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~ 446 (595)
-+-.+++|+.|+++.|..-.+-. ......++|++|+| +.+.+++++++.+..++.
T Consensus 288 -------------~lfgLt~L~~L~lS~NaI~rih~--d~WsftqkL~~LdL----------s~N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 288 -------------WLFGLTSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDL----------SSNRITRLDEGSFRVLSQ 342 (873)
T ss_pred -------------cccccchhhhhccchhhhheeec--chhhhcccceeEec----------cccccccCChhHHHHHHH
Confidence 12346778888888776444211 12224567888888 557788888888888999
Q ss_pred ccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccc
Q 036689 447 LKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIF 526 (595)
Q Consensus 447 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 526 (595)
|+.|+++. ++++++ ....+..+++|++|+++++. +.-.+++... +.-.+++|+.|.+.+ +++.+++..++.
T Consensus 343 Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~IEDaa~----~f~gl~~LrkL~l~g-Nqlk~I~krAfs- 413 (873)
T KOG4194|consen 343 LEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIEDAAV----AFNGLPSLRKLRLTG-NQLKSIPKRAFS- 413 (873)
T ss_pred hhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEecchh----hhccchhhhheeecC-ceeeecchhhhc-
Confidence 99999998 888887 55667889999999998876 4333322111 122489999999999 689999988765
Q ss_pred cCCCccEEEEeCCCCccccCCCCCCCCCcceEEecc
Q 036689 527 KFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRN 562 (595)
Q Consensus 527 ~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~ 562 (595)
.+++||.|++.+.+-.+-=|..+.++ .||++.++.
T Consensus 414 gl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 414 GLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 58999999999865433336666666 999998863
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.9e-21 Score=226.15 Aligned_cols=386 Identities=18% Similarity=0.207 Sum_probs=272.8
Q ss_pred cccCCCcEEEcccCC-----CceEecCCCCCCCcCCcC-CCccEEeccCccCccccccccccccCCCCccEEEecCCCCc
Q 036689 45 EGFLQLKHLHVQNNP-----DFMCIVDSKERVPLDDAF-PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQL 118 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~-----~l~~i~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l 118 (595)
.++++|+.|.+.+.. .+..-.+. .+..+ ++|+.|++.+. .++.++. .+ .+.+|++|++.++ .+
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~-----~~~~lp~~Lr~L~~~~~-~l~~lP~---~f-~~~~L~~L~L~~s-~l 623 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPE-----GFDYLPPKLRLLRWDKY-PLRCMPS---NF-RPENLVKLQMQGS-KL 623 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCc-----chhhcCcccEEEEecCC-CCCCCCC---cC-CccCCcEEECcCc-cc
Confidence 789999999996542 11111111 23334 46999999985 5565532 23 4689999999995 67
Q ss_pred ccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccc
Q 036689 119 SNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETC 198 (595)
Q Consensus 119 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 198 (595)
..++ ..+..+++|+.|++++|..+..+|. ...+++|+.|++++|..+..++..
T Consensus 624 ~~L~--~~~~~l~~Lk~L~Ls~~~~l~~ip~-----------ls~l~~Le~L~L~~c~~L~~lp~s-------------- 676 (1153)
T PLN03210 624 EKLW--DGVHSLTGLRNIDLRGSKNLKEIPD-----------LSMATNLETLKLSDCSSLVELPSS-------------- 676 (1153)
T ss_pred cccc--cccccCCCCCEEECCCCCCcCcCCc-----------cccCCcccEEEecCCCCccccchh--------------
Confidence 7776 5567899999999999888877762 345789999999999988776542
Q ss_pred cCccccccccccCCCccccccccCCccceeecccc-cceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhcc
Q 036689 199 SNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKV-NIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSF 277 (595)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l 277 (595)
...+++|+.|++++| .++.+ |..+ .+++|+.|++++|..++..+. ..
T Consensus 677 --------------------i~~L~~L~~L~L~~c~~L~~L-----p~~i--~l~sL~~L~Lsgc~~L~~~p~-----~~ 724 (1153)
T PLN03210 677 --------------------IQYLNKLEDLDMSRCENLEIL-----PTGI--NLKSLYRLNLSGCSRLKSFPD-----IS 724 (1153)
T ss_pred --------------------hhccCCCCEEeCCCCCCcCcc-----CCcC--CCCCCCEEeCCCCCCcccccc-----cc
Confidence 125789999999998 77766 7654 689999999999988776432 24
Q ss_pred CCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCC------ccccCcccceeeecCCCCcc
Q 036689 278 EHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGM------HTSEWPALKLLDVSACDQVT 351 (595)
Q Consensus 278 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~------~~~~~~~L~~L~l~~c~~l~ 351 (595)
++|++|++.++. ++.+|... .+++|+.|.+.++....- +... ....+++|+.|++++|+.+.
T Consensus 725 ~nL~~L~L~~n~-i~~lP~~~----------~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 725 TNISWLDLDETA-IEEFPSNL----------RLENLDELILCEMKSEKL-WERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred CCcCeeecCCCc-cccccccc----------cccccccccccccchhhc-cccccccchhhhhccccchheeCCCCCCcc
Confidence 689999999987 77776521 278999999987553211 1100 11125789999999999888
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCc
Q 036689 352 VFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCD 431 (595)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 431 (595)
.+|. . ++.+++|+.|++++|..++.++.. ..+++|+.|+++ +|.
T Consensus 793 ~lP~-----------------------s-i~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls---------~c~ 836 (1153)
T PLN03210 793 ELPS-----------------------S-IQNLHKLEHLEIENCINLETLPTG---INLESLESLDLS---------GCS 836 (1153)
T ss_pred ccCh-----------------------h-hhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECC---------CCC
Confidence 8887 2 467999999999999887744422 257788998886 555
Q ss_pred cccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecc
Q 036689 432 NLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLL 511 (595)
Q Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~ 511 (595)
.+..++. ..++|+.|++++ +.++.++ ..+..+++|++|++.+|+.++.++..... +++|+.+++.
T Consensus 837 ~L~~~p~----~~~nL~~L~Ls~-n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~~~~~~--------L~~L~~L~l~ 901 (1153)
T PLN03210 837 RLRTFPD----ISTNISDLNLSR-TGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVSLNISK--------LKHLETVDFS 901 (1153)
T ss_pred ccccccc----cccccCEeECCC-CCCccCh--HHHhcCCCCCEEECCCCCCcCccCccccc--------ccCCCeeecC
Confidence 5555433 146899999998 6777764 34678999999999999999988775554 8899999999
Q ss_pred ccccccccccCcc-----------cccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCC
Q 036689 512 DLDSLTSFCSGNY-----------IFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRG 564 (595)
Q Consensus 512 ~~~~l~~l~~~~~-----------~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~ 564 (595)
+|++++.++.... ...+|+...+.+.+|.++..-+ .+.+....+.+.+.|..
T Consensus 902 ~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a-~l~~~~~~~~~~l~g~e 964 (1153)
T PLN03210 902 DCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA-LLQQQSIFKQLILSGEE 964 (1153)
T ss_pred CCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh-hhcccccceEEECCCcc
Confidence 9999886653211 0124455666777887765322 22222334555555433
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-20 Score=188.82 Aligned_cols=375 Identities=17% Similarity=0.197 Sum_probs=268.4
Q ss_pred ccCCC-cEEEcccCCCceEecCCCCCCCcC-CcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccc
Q 036689 46 GFLQL-KHLHVQNNPDFMCIVDSKERVPLD-DAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL 123 (595)
Q Consensus 46 ~l~~L-~~L~L~~~~~l~~i~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~ 123 (595)
.|+.. +.|+.++. ++..+ +|.... .-++.-++|+++++ ++.++. ...+..+++|+++++.+ +.++.+|
T Consensus 49 ~c~c~~~lldcs~~-~lea~----~~~~l~g~lp~~t~~LdlsnN-kl~~id--~~~f~nl~nLq~v~l~~-N~Lt~IP- 118 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDR-ELEAI----DKSRLKGFLPSQTQTLDLSNN-KLSHID--FEFFYNLPNLQEVNLNK-NELTRIP- 118 (873)
T ss_pred cCCCCceeeecCcc-ccccc----cccccCCcCccceeeeecccc-ccccCc--HHHHhcCCcceeeeecc-chhhhcc-
Confidence 45544 34555554 45443 122222 23445788999995 888873 33378999999999999 6888876
Q ss_pred hhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccc
Q 036689 124 LSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKIS 203 (595)
Q Consensus 124 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (595)
.......+|+.|++.+ +.+..+..
T Consensus 119 -~f~~~sghl~~L~L~~-N~I~sv~s------------------------------------------------------ 142 (873)
T KOG4194|consen 119 -RFGHESGHLEKLDLRH-NLISSVTS------------------------------------------------------ 142 (873)
T ss_pred -cccccccceeEEeeec-cccccccH------------------------------------------------------
Confidence 5555566799999998 55544321
Q ss_pred cccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEE
Q 036689 204 SLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHL 283 (595)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L 283 (595)
.++..++.|++||++.|.+.++-...+|. -.++++|+|++ +.++.+ ....+.++.+|-.|
T Consensus 143 -------------e~L~~l~alrslDLSrN~is~i~~~sfp~-----~~ni~~L~La~-N~It~l-~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 143 -------------EELSALPALRSLDLSRNLISEIPKPSFPA-----KVNIKKLNLAS-NRITTL-ETGHFDSLNSLLTL 202 (873)
T ss_pred -------------HHHHhHhhhhhhhhhhchhhcccCCCCCC-----CCCceEEeecc-cccccc-ccccccccchheee
Confidence 12234788999999999999986666654 36899999996 567765 44456888899999
Q ss_pred EeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCC
Q 036689 284 EIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCES 363 (595)
Q Consensus 284 ~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~ 363 (595)
.++++. ++.+|...+-. +|+|+.|+|.. ++++... +..-..+++|+.|.+.++ ++..+..
T Consensus 203 kLsrNr-ittLp~r~Fk~--------L~~L~~LdLnr-N~irive-~ltFqgL~Sl~nlklqrN-~I~kL~D-------- 262 (873)
T KOG4194|consen 203 KLSRNR-ITTLPQRSFKR--------LPKLESLDLNR-NRIRIVE-GLTFQGLPSLQNLKLQRN-DISKLDD-------- 262 (873)
T ss_pred ecccCc-ccccCHHHhhh--------cchhhhhhccc-cceeeeh-hhhhcCchhhhhhhhhhc-CcccccC--------
Confidence 999998 99998754432 89999999988 4444331 111223788999988765 3544544
Q ss_pred CCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccc
Q 036689 364 SEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVS 443 (595)
Q Consensus 364 ~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~ 443 (595)
..+-.+..+++|++..|+...+-.+ ...++..|++|++ +.+.+.++.+..+..
T Consensus 263 ---------------G~Fy~l~kme~l~L~~N~l~~vn~g--~lfgLt~L~~L~l----------S~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 263 ---------------GAFYGLEKMEHLNLETNRLQAVNEG--WLFGLTSLEQLDL----------SYNAIQRIHIDSWSF 315 (873)
T ss_pred ---------------cceeeecccceeecccchhhhhhcc--cccccchhhhhcc----------chhhhheeecchhhh
Confidence 2235688999999999987664332 2336788999999 456788887777778
Q ss_pred cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccC-
Q 036689 444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSG- 522 (595)
Q Consensus 444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~- 522 (595)
+++|+.|++++ ++++.+.+ ..+..+..|++|.++++. +..+.+..+. .+.+|+.|+++...--..+.++
T Consensus 316 tqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~Ns-i~~l~e~af~-------~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 316 TQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSHNS-IDHLAEGAFV-------GLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred cccceeEeccc-cccccCCh-hHHHHHHHhhhhcccccc-hHHHHhhHHH-------HhhhhhhhcCcCCeEEEEEecch
Confidence 89999999998 88998844 556889999999999987 7777655443 5889999999884322222222
Q ss_pred -cccccCCCccEEEEeCCCCccccCC-CCCCCCCcceEEeccCCC
Q 036689 523 -NYIFKFPSLEVLFVVGCPKMNIFTT-GELSTPPRVDVMYRNRGA 565 (595)
Q Consensus 523 -~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~i~~~~~ 565 (595)
++. .+|+|++|++.|. +++.+|. .+..+++|+++++.+|.-
T Consensus 386 ~~f~-gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 386 VAFN-GLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhc-cchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence 222 3899999999995 8999984 456699999999987665
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=2.8e-20 Score=187.05 Aligned_cols=369 Identities=19% Similarity=0.216 Sum_probs=223.3
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.++.++..+++++...+...|.- ...+++++.|.|.+. ++..++. ....+.+||+|.+..+ +++.+.-+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt-~L~~vPe------EL~~lqkLEHLs~~HN-~L~~vhGE-- 73 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRT-KLEQVPE------ELSRLQKLEHLSMAHN-QLISVHGE-- 73 (1255)
T ss_pred ccceeecccccCCcCCCCcCchh-HHHhhheeEEEechh-hhhhChH------HHHHHhhhhhhhhhhh-hhHhhhhh--
Confidence 46778888888888765544432 378889999999876 6776643 3567888899988884 77766322
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
...+|.||.+.++. +.+++.-.+..+-++..|..||+++ +.+.++|.. |
T Consensus 74 -Ls~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~----------------L------------ 122 (1255)
T KOG0444|consen 74 -LSDLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTN----------------L------------ 122 (1255)
T ss_pred -hccchhhHHHhhhc-cccccCCCCchhcccccceeeecch-hhhhhcchh----------------h------------
Confidence 56788888888888 5666644336666788888888888 566665521 0
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
-...++-+|++++|+|..+ |..+|.++..|-.|++
T Consensus 123 ----------------------------------------E~AKn~iVLNLS~N~IetI-----Pn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 123 ----------------------------------------EYAKNSIVLNLSYNNIETI-----PNSLFINLTDLLFLDL 157 (1255)
T ss_pred ----------------------------------------hhhcCcEEEEcccCccccC-----CchHHHhhHhHhhhcc
Confidence 1245666788888877777 7776667777777888
Q ss_pred ecCCCCccccchhhhhccCCCcEEEeecccc----cceecccccCCCCCCCCcCCCcccEEeecCCCCc-ccccCCCccc
Q 036689 260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKG----LQEIISKEGADDQVPPNFVFPQVTILRLVGLPEL-KCLYPGMHTS 334 (595)
Q Consensus 260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~~~~~~~~~ 334 (595)
++ +.+..+||- +..+..|+.|.++++.- +..+|. +.+|.+|.+++-.+. ..+|.....
T Consensus 158 S~-NrLe~LPPQ--~RRL~~LqtL~Ls~NPL~hfQLrQLPs-------------mtsL~vLhms~TqRTl~N~Ptsld~- 220 (1255)
T KOG0444|consen 158 SN-NRLEMLPPQ--IRRLSMLQTLKLSNNPLNHFQLRQLPS-------------MTSLSVLHMSNTQRTLDNIPTSLDD- 220 (1255)
T ss_pred cc-chhhhcCHH--HHHHhhhhhhhcCCChhhHHHHhcCcc-------------chhhhhhhcccccchhhcCCCchhh-
Confidence 85 467766553 47777888888887761 222222 555666666664332 223332211
Q ss_pred cCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCce
Q 036689 335 EWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLK 414 (595)
Q Consensus 335 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 414 (595)
+.+|..++++. +.+..+|.. .-.+++|+.|++++|+..+.. .......+|+
T Consensus 221 -l~NL~dvDlS~-N~Lp~vPec------------------------ly~l~~LrrLNLS~N~iteL~---~~~~~W~~lE 271 (1255)
T KOG0444|consen 221 -LHNLRDVDLSE-NNLPIVPEC------------------------LYKLRNLRRLNLSGNKITELN---MTEGEWENLE 271 (1255)
T ss_pred -hhhhhhccccc-cCCCcchHH------------------------HhhhhhhheeccCcCceeeee---ccHHHHhhhh
Confidence 56666666653 456556651 245677888888877644311 0111223455
Q ss_pred eEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCcc
Q 036689 415 VLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQ 494 (595)
Q Consensus 415 ~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~ 494 (595)
.|++ +-+.++.++. .+..++.|+.|+..+ ++++--...+-++.+..|+++...++. ++-+|.+.-
T Consensus 272 tLNl----------SrNQLt~LP~-avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglc-- 336 (1255)
T KOG0444|consen 272 TLNL----------SRNQLTVLPD-AVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLC-- 336 (1255)
T ss_pred hhcc----------ccchhccchH-HHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cccCchhhh--
Confidence 5555 2234444433 455566666666655 444422222334556666666665544 544444322
Q ss_pred ccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCcccc
Q 036689 495 LAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIF 545 (595)
Q Consensus 495 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l 545 (595)
.+++|+.|.+.. +.+..+|++... +|.|+.|++...|++-.-
T Consensus 337 ------RC~kL~kL~L~~-NrLiTLPeaIHl--L~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 337 ------RCVKLQKLKLDH-NRLITLPEAIHL--LPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ------hhHHHHHhcccc-cceeechhhhhh--cCCcceeeccCCcCccCC
Confidence 256666666665 455556666543 666666666666666443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=7.4e-20 Score=184.01 Aligned_cols=341 Identities=16% Similarity=0.224 Sum_probs=240.3
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 180 (595)
...+..++.|.|.. .++..+| ..++.+.+|++|.+++ +.+..+. .+...++.|+.+.+.+.+ |+.
T Consensus 28 v~qMt~~~WLkLnr-t~L~~vP--eEL~~lqkLEHLs~~H-N~L~~vh----------GELs~Lp~LRsv~~R~N~-LKn 92 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNR-TKLEQVP--EELSRLQKLEHLSMAH-NQLISVH----------GELSDLPRLRSVIVRDNN-LKN 92 (1255)
T ss_pred HHHhhheeEEEech-hhhhhCh--HHHHHHhhhhhhhhhh-hhhHhhh----------hhhccchhhHHHhhhccc-ccc
Confidence 34455666666666 5666665 5566666666666666 3332221 122234444444333211 111
Q ss_pred cccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689 181 FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR 260 (595)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~ 260 (595)
..++..+|+ +..|..|++++|++++. |..+ ..-+++-.|+++
T Consensus 93 ----------------------------sGiP~diF~----l~dLt~lDLShNqL~Ev-----P~~L-E~AKn~iVLNLS 134 (1255)
T KOG0444|consen 93 ----------------------------SGIPTDIFR----LKDLTILDLSHNQLREV-----PTNL-EYAKNSIVLNLS 134 (1255)
T ss_pred ----------------------------CCCCchhcc----cccceeeecchhhhhhc-----chhh-hhhcCcEEEEcc
Confidence 134444555 88899999999999988 8876 677899999999
Q ss_pred cCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCc----ccccCCCccccC
Q 036689 261 KCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPEL----KCLYPGMHTSEW 336 (595)
Q Consensus 261 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l----~~~~~~~~~~~~ 336 (595)
+ +++..+| ...+.+++.|-+|+++++. ++.+|+.. -.+.+|++|.|+++|-. +.+|. .
T Consensus 135 ~-N~IetIP-n~lfinLtDLLfLDLS~Nr-Le~LPPQ~---------RRL~~LqtL~Ls~NPL~hfQLrQLPs------m 196 (1255)
T KOG0444|consen 135 Y-NNIETIP-NSLFINLTDLLFLDLSNNR-LEMLPPQI---------RRLSMLQTLKLSNNPLNHFQLRQLPS------M 196 (1255)
T ss_pred c-CccccCC-chHHHhhHhHhhhccccch-hhhcCHHH---------HHHhhhhhhhcCCChhhHHHHhcCcc------c
Confidence 6 5777764 4567899999999999998 98888732 12789999999998732 22222 4
Q ss_pred cccceeeecCCCC-ccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCcee
Q 036689 337 PALKLLDVSACDQ-VTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKV 415 (595)
Q Consensus 337 ~~L~~L~l~~c~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 415 (595)
++|+.|.+++-.. +..+|. .+..+.+|..++++.|..-.+. ...-.+++|+.
T Consensus 197 tsL~vLhms~TqRTl~N~Pt------------------------sld~l~NL~dvDlS~N~Lp~vP---ecly~l~~Lrr 249 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPT------------------------SLDDLHNLRDVDLSENNLPIVP---ECLYKLRNLRR 249 (1255)
T ss_pred hhhhhhhcccccchhhcCCC------------------------chhhhhhhhhccccccCCCcch---HHHhhhhhhhe
Confidence 5666666666543 444665 1467899999999987643221 11235678999
Q ss_pred EEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc-cccchhcccCcc
Q 036689 416 LQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR-AMTQVVKSEGNQ 494 (595)
Q Consensus 416 L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~-~l~~i~~~~~~~ 494 (595)
|+|++ +.++.+.. ......+|+.|+++. +.++.+| ..+-.++.|+.|.+.++. ..+.||.+.+.
T Consensus 250 LNLS~----------N~iteL~~-~~~~W~~lEtLNlSr-NQLt~LP--~avcKL~kL~kLy~n~NkL~FeGiPSGIGK- 314 (1255)
T KOG0444|consen 250 LNLSG----------NKITELNM-TEGEWENLETLNLSR-NQLTVLP--DAVCKLTKLTKLYANNNKLTFEGIPSGIGK- 314 (1255)
T ss_pred eccCc----------Cceeeeec-cHHHHhhhhhhcccc-chhccch--HHHhhhHHHHHHHhccCcccccCCccchhh-
Confidence 99943 55666544 555677899999998 7888874 445788999999997765 25677777765
Q ss_pred ccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCC
Q 036689 495 LAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGA 565 (595)
Q Consensus 495 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~ 565 (595)
+.+|+++...+ ++++-+|++.. +|+.|+.|.++ |..+-.+|.++.-++.|+.++++.|..
T Consensus 315 -------L~~Levf~aan-N~LElVPEglc--RC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 315 -------LIQLEVFHAAN-NKLELVPEGLC--RCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred -------hhhhHHHHhhc-cccccCchhhh--hhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcC
Confidence 88999999988 68999999985 49999999997 568888999998899999999998776
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.8e-19 Score=172.68 Aligned_cols=461 Identities=15% Similarity=0.124 Sum_probs=226.2
Q ss_pred ccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccc
Q 036689 18 LQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD 97 (595)
Q Consensus 18 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 97 (595)
+..+.-+..|++.++... ..++.+ +.+..++.|..+++ .+..+++ ...+.++|..|+.++. .+.++
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~ai--g~l~~l~~l~vs~n-~ls~lp~------~i~s~~~l~~l~~s~n-~~~el--- 129 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAAI--GELEALKSLNVSHN-KLSELPE------QIGSLISLVKLDCSSN-ELKEL--- 129 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHHH--HHHHHHHHhhcccc-hHhhccH------HHhhhhhhhhhhcccc-ceeec---
Confidence 444555566666666552 344444 66777777777666 4544422 2445666677776663 45544
Q ss_pred cccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689 98 RLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE 177 (595)
Q Consensus 98 ~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (595)
+..++.+-.|..++..+ +++..+| +.+.++.+|..+++.+ +++++.+. +.+.+..|++|+.-. .-
T Consensus 130 ~~~i~~~~~l~dl~~~~-N~i~slp--~~~~~~~~l~~l~~~~-n~l~~l~~----------~~i~m~~L~~ld~~~-N~ 194 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATN-NQISSLP--EDMVNLSKLSKLDLEG-NKLKALPE----------NHIAMKRLKHLDCNS-NL 194 (565)
T ss_pred CchHHHHhhhhhhhccc-cccccCc--hHHHHHHHHHHhhccc-cchhhCCH----------HHHHHHHHHhcccch-hh
Confidence 23356666666666666 4555555 4455566666666666 34444332 222244455543211 01
Q ss_pred ccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEE
Q 036689 178 LTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRL 257 (595)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L 257 (595)
+..+|.... ++..+. |- -+.++.-. ...+...++.|++++++.|++..+ |..++..++++..|
T Consensus 195 L~tlP~~lg--~l~~L~---~L----yL~~Nki~---~lPef~gcs~L~Elh~g~N~i~~l-----pae~~~~L~~l~vL 257 (565)
T KOG0472|consen 195 LETLPPELG--GLESLE---LL----YLRRNKIR---FLPEFPGCSLLKELHVGENQIEML-----PAEHLKHLNSLLVL 257 (565)
T ss_pred hhcCChhhc--chhhhH---HH----Hhhhcccc---cCCCCCccHHHHHHHhcccHHHhh-----HHHHhcccccceee
Confidence 112121100 000000 00 00000000 011112344455555555544444 44443445555555
Q ss_pred EEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCcc-ccC
Q 036689 258 ILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHT-SEW 336 (595)
Q Consensus 258 ~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~-~~~ 336 (595)
|+.+ ++++++|. .+..+.+|++|+++++. ++++|.. . ..+ +|+.|.+.|+| ++.+...... +.-
T Consensus 258 DLRd-Nklke~Pd--e~clLrsL~rLDlSNN~-is~Lp~s-L--------gnl-hL~~L~leGNP-lrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 258 DLRD-NKLKEVPD--EICLLRSLERLDLSNND-ISSLPYS-L--------GNL-HLKFLALEGNP-LRTIRREIISKGTQ 322 (565)
T ss_pred eccc-cccccCch--HHHHhhhhhhhcccCCc-cccCCcc-c--------ccc-eeeehhhcCCc-hHHHHHHHHcccHH
Confidence 5554 34555433 23455555555555554 5555431 1 113 55555555544 1111110000 000
Q ss_pred cccceeeecCCCCccccccccccccCCCC-CCCCCCCC-CCCCCCcCccCCCcceEeccCCCCeeccCCCCCc-----cc
Q 036689 337 PALKLLDVSACDQVTVFDSELFSFCESSE-EDKPDIPA-QQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQ-----HL 409 (595)
Q Consensus 337 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~-~~~~~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~ 409 (595)
.-|++|.= .+.+...+.. +...+..+ ....|.......+.+.|++++-+...+....+.+ ..
T Consensus 323 ~vLKyLrs-----------~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt 391 (565)
T KOG0472|consen 323 EVLKYLRS-----------KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVT 391 (565)
T ss_pred HHHHHHHH-----------hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceE
Confidence 01121110 0000001111 11111111 2333444456777888888776544422111110 11
Q ss_pred ccCceeEEeecccc--------ccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCc
Q 036689 410 FGGLKVLQLKFDAS--------AAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGC 481 (595)
Q Consensus 410 ~~~L~~L~L~~~~~--------~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 481 (595)
..++..-.+..+|+ .-.+.--++..++++..+..+++|..|++++ +-+.++|. . .+++..|+.|+++.+
T Consensus 392 ~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~-e-~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 392 SVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPE-E-MGSLVRLQTLNLSFN 468 (565)
T ss_pred EEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcch-h-hhhhhhhheeccccc
Confidence 11122222233333 0011122344455555667789999999998 67777753 3 267778999999887
Q ss_pred ccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEec
Q 036689 482 RAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYR 561 (595)
Q Consensus 482 ~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~ 561 (595)
. ...+|..-.. +..|+.+-.++ +++.+++.... ..|..|.+|++.+. .+..+|++++++++|+++.+.
T Consensus 469 r-Fr~lP~~~y~--------lq~lEtllas~-nqi~~vd~~~l-~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 469 R-FRMLPECLYE--------LQTLETLLASN-NQIGSVDPSGL-KNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred c-cccchHHHhh--------HHHHHHHHhcc-ccccccChHHh-hhhhhcceeccCCC-chhhCChhhccccceeEEEec
Confidence 4 6666543322 23344444443 67888876522 35889999999874 788999999999999999999
Q ss_pred cCCC
Q 036689 562 NRGA 565 (595)
Q Consensus 562 ~~~~ 565 (595)
||..
T Consensus 537 gNpf 540 (565)
T KOG0472|consen 537 GNPF 540 (565)
T ss_pred CCcc
Confidence 8877
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-18 Score=182.70 Aligned_cols=419 Identities=20% Similarity=0.209 Sum_probs=221.2
Q ss_pred ccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccc
Q 036689 16 KKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERIC 95 (595)
Q Consensus 16 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 95 (595)
+.+...-+|+.|+++++.. ...+.++ -.+++|+.|.++.+ .+..++ . ......+|++|.|.+. .+..+
T Consensus 39 ~~~~~~v~L~~l~lsnn~~-~~fp~~i--t~l~~L~~ln~s~n-~i~~vp-~-----s~~~~~~l~~lnL~~n-~l~~l- 106 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQI-SSFPIQI--TLLSHLRQLNLSRN-YIRSVP-S-----SCSNMRNLQYLNLKNN-RLQSL- 106 (1081)
T ss_pred HHhhheeeeEEeecccccc-ccCCchh--hhHHHHhhcccchh-hHhhCc-h-----hhhhhhcchhheeccc-hhhcC-
Confidence 3344333499999998877 3444444 68889999999988 677663 2 4567788999999984 66665
Q ss_pred cccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccc-----cccc-ccccccccc-
Q 036689 96 QDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYD-----AIDH-QKIEFGQLS- 168 (595)
Q Consensus 96 ~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-----~~~~-~~~~~~~L~- 168 (595)
|.++..+.+|++|++++ +.+...| ..+..+..++.+..+++.++..+....-... .+.. -......++
T Consensus 107 --P~~~~~lknl~~LdlS~-N~f~~~P--l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 107 --PASISELKNLQYLDLSF-NHFGPIP--LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred --chhHHhhhcccccccch-hccCCCc--hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe
Confidence 55588899999999999 5666665 5566777777777776533332221100000 0000 000011111
Q ss_pred ----------eEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceee
Q 036689 169 ----------TLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKI 238 (595)
Q Consensus 169 ----------~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 238 (595)
+++++.+..++.+.+. |.++ ..-...-++++.|+...|.++..
T Consensus 182 ~ldLr~N~~~~~dls~~~~l~~l~c~-------------rn~l--------------s~l~~~g~~l~~L~a~~n~l~~~ 234 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLDLSNLANLEVLHCE-------------RNQL--------------SELEISGPSLTALYADHNPLTTL 234 (1081)
T ss_pred eeecccchhhhhhhhhccchhhhhhh-------------hccc--------------ceEEecCcchheeeeccCcceee
Confidence 2222222333222221 1111 00001123444444444433322
Q ss_pred cccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC--------------CC
Q 036689 239 WHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD--------------QV 304 (595)
Q Consensus 239 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~--------------~~ 304 (595)
.... .-.+|++++++. +.+..++ ++++.+++|+.+.+.++. ++.++..-+... ..
T Consensus 235 ~~~p-------~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip 303 (1081)
T KOG0618|consen 235 DVHP-------VPLNLQYLDISH-NNLSNLP--EWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIP 303 (1081)
T ss_pred cccc-------ccccceeeecch-hhhhcch--HHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCC
Confidence 1110 123455555554 3444432 344555555555555544 443332110000 00
Q ss_pred CCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccC
Q 036689 305 PPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVF 384 (595)
Q Consensus 305 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 384 (595)
.....+.+|++|+|.. .++..++.........+|..|..+. .++...|. .-...+
T Consensus 304 ~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~-----------------------~~e~~~ 358 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPS-----------------------YEENNH 358 (1081)
T ss_pred Ccccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhh-cccccccc-----------------------ccchhh
Confidence 0000144455555554 2233333211000011133333321 12222222 112356
Q ss_pred CCcceEeccCCCCee-ccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccccc
Q 036689 385 PNLEELGLDGKDIRM-IWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVA 463 (595)
Q Consensus 385 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 463 (595)
+.|+.|.+.+|...+ .+ ....++++||.|+| +-+++.+++...+..+..|+.|+++| ++++.++
T Consensus 359 ~~Lq~LylanN~Ltd~c~---p~l~~~~hLKVLhL----------syNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp- 423 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCF---PVLVNFKHLKVLHL----------SYNRLNSFPASKLRKLEELEELNLSG-NKLTTLP- 423 (1081)
T ss_pred HHHHHHHHhcCcccccch---hhhccccceeeeee----------cccccccCCHHHHhchHHhHHHhccc-chhhhhh-
Confidence 778888888877554 22 12446778888888 45777777777777788888888888 7888874
Q ss_pred chHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCc
Q 036689 464 SSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKM 542 (595)
Q Consensus 464 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l 542 (595)
.. +..+..|++|...++. +..+| ... .++.|+.++++. ++|+.+...... ..|.|++|+++|..++
T Consensus 424 ~t-va~~~~L~tL~ahsN~-l~~fP-e~~--------~l~qL~~lDlS~-N~L~~~~l~~~~-p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 424 DT-VANLGRLHTLRAHSNQ-LLSFP-ELA--------QLPQLKVLDLSC-NNLSEVTLPEAL-PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HH-HHhhhhhHHHhhcCCc-eeech-hhh--------hcCcceEEeccc-chhhhhhhhhhC-CCcccceeeccCCccc
Confidence 33 3567888888776654 66666 222 378888888886 566654433221 1377888888887653
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=2.9e-17 Score=173.03 Aligned_cols=225 Identities=19% Similarity=0.188 Sum_probs=134.5
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
+.+|+.+...+|++..+ |..+ ....+|+.|.+..| .++.+++. ...+..|++|++..+. +.++|...+.-
T Consensus 263 ~~nle~l~~n~N~l~~l-----p~ri-~~~~~L~~l~~~~n-el~yip~~--le~~~sL~tLdL~~N~-L~~lp~~~l~v 332 (1081)
T KOG0618|consen 263 CANLEALNANHNRLVAL-----PLRI-SRITSLVSLSAAYN-ELEYIPPF--LEGLKSLRTLDLQSNN-LPSLPDNFLAV 332 (1081)
T ss_pred cccceEecccchhHHhh-----HHHH-hhhhhHHHHHhhhh-hhhhCCCc--ccccceeeeeeehhcc-ccccchHHHhh
Confidence 44444444444444333 3222 12344555555443 45554443 3556667777776665 65555411100
Q ss_pred CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689 302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVT-VFDSELFSFCESSEEDKPDIPAQQPLFLP 380 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (595)
....|+.|..+.. .+...+.- .....+.|+.|++.++..-. .+|.
T Consensus 333 -------~~~~l~~ln~s~n-~l~~lp~~-~e~~~~~Lq~LylanN~Ltd~c~p~------------------------- 378 (1081)
T KOG0618|consen 333 -------LNASLNTLNVSSN-KLSTLPSY-EENNHAALQELYLANNHLTDSCFPV------------------------- 378 (1081)
T ss_pred -------hhHHHHHHhhhhc-cccccccc-cchhhHHHHHHHHhcCcccccchhh-------------------------
Confidence 0112444444432 23322211 12226778888888765322 2444
Q ss_pred CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689 381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN 460 (595)
Q Consensus 381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 460 (595)
+..+.+|+.|++++|+.-.+.+ .....++.|++|+|+ .+.++.++. .+..+..|+.|...+ +.+..
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~LeeL~LS----------GNkL~~Lp~-tva~~~~L~tL~ahs-N~l~~ 444 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPA--SKLRKLEELEELNLS----------GNKLTTLPD-TVANLGRLHTLRAHS-NQLLS 444 (1081)
T ss_pred hccccceeeeeecccccccCCH--HHHhchHHhHHHhcc----------cchhhhhhH-HHHhhhhhHHHhhcC-Cceee
Confidence 6789999999999997554322 122356778888894 477888775 778899999999887 77777
Q ss_pred cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccc
Q 036689 461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDS 515 (595)
Q Consensus 461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 515 (595)
.| . +..++.|+.++++.+. ++.+...... .-|+|++|++++...
T Consensus 445 fP--e-~~~l~qL~~lDlS~N~-L~~~~l~~~~-------p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 FP--E-LAQLPQLKVLDLSCNN-LSEVTLPEAL-------PSPNLKYLDLSGNTR 488 (1081)
T ss_pred ch--h-hhhcCcceEEecccch-hhhhhhhhhC-------CCcccceeeccCCcc
Confidence 64 2 4678999999997654 7776544332 237999999999765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=2.5e-17 Score=158.16 Aligned_cols=410 Identities=16% Similarity=0.152 Sum_probs=225.5
Q ss_pred cccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccc
Q 036689 15 SKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERI 94 (595)
Q Consensus 15 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 94 (595)
+.+|+-+.+++.|+.+.++. ..+++++ +..++|++|+++.+ .+..+++ .+..+-.|+.|+-.++ ++..+
T Consensus 84 p~aig~l~~l~~l~vs~n~l-s~lp~~i--~s~~~l~~l~~s~n-~~~el~~------~i~~~~~l~dl~~~~N-~i~sl 152 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKL-SELPEQI--GSLISLVKLDCSSN-ELKELPD------SIGRLLDLEDLDATNN-QISSL 152 (565)
T ss_pred CHHHHHHHHHHHhhcccchH-hhccHHH--hhhhhhhhhhcccc-ceeecCc------hHHHHhhhhhhhcccc-ccccC
Confidence 66677677888888888877 4566666 78888888888887 5555533 2444556677766663 45544
Q ss_pred ccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceE----
Q 036689 95 CQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTL---- 170 (595)
Q Consensus 95 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L---- 170 (595)
+..++.+.+|..+++.+ ++++.+++ ..+ ++..|++|+... +.++.+|.. ...+..|+-|
T Consensus 153 ---p~~~~~~~~l~~l~~~~-n~l~~l~~-~~i-~m~~L~~ld~~~-N~L~tlP~~----------lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 153 ---PEDMVNLSKLSKLDLEG-NKLKALPE-NHI-AMKRLKHLDCNS-NLLETLPPE----------LGGLESLELLYLRR 215 (565)
T ss_pred ---chHHHHHHHHHHhhccc-cchhhCCH-HHH-HHHHHHhcccch-hhhhcCChh----------hcchhhhHHHHhhh
Confidence 33456666777777777 56666654 222 366677776655 455555532 2222222222
Q ss_pred -------ecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCC
Q 036689 171 -------CLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQL 243 (595)
Q Consensus 171 -------~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 243 (595)
++.+|+.+..++.+.+-... +- -.....++++.+||+..|.++++
T Consensus 216 Nki~~lPef~gcs~L~Elh~g~N~i~~--lp---------------------ae~~~~L~~l~vLDLRdNklke~----- 267 (565)
T KOG0472|consen 216 NKIRFLPEFPGCSLLKELHVGENQIEM--LP---------------------AEHLKHLNSLLVLDLRDNKLKEV----- 267 (565)
T ss_pred cccccCCCCCccHHHHHHHhcccHHHh--hH---------------------HHHhcccccceeeeccccccccC-----
Confidence 23455555555544310000 00 01122578999999999999988
Q ss_pred CccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC----------------------
Q 036689 244 PVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD---------------------- 301 (595)
Q Consensus 244 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~---------------------- 301 (595)
|..+ .-+.+|.+||+++ +.++.++.. ++++ .|+.|-+.++. +..+...-..+
T Consensus 268 Pde~-clLrsL~rLDlSN-N~is~Lp~s--Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 268 PDEI-CLLRSLERLDLSN-NDISSLPYS--LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred chHH-HHhhhhhhhcccC-CccccCCcc--cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 8876 4678899999996 577776553 6888 99999999886 44432110000
Q ss_pred C-----CCCCCcC------CCcccEEeecCCCCcccccCCCccc-cCcccceeeecCCCCccccccccccccCCCCCCCC
Q 036689 302 D-----QVPPNFV------FPQVTILRLVGLPELKCLYPGMHTS-EWPALKLLDVSACDQVTVFDSELFSFCESSEEDKP 369 (595)
Q Consensus 302 ~-----~~~~~~~------l~~L~~L~L~~~~~l~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~ 369 (595)
+ ...+.+. ..+.|.|++++ .+++.+|...... .-.-.+..+++.. .+..+|.++.
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~----------- 408 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLV----------- 408 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhH-----------
Confidence 0 0011111 23456666665 3444444332110 0001223333332 1333443211
Q ss_pred CCCCCCCCCCcCccCCCcce-EeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCcc
Q 036689 370 DIPAQQPLFLPEKVFPNLEE-LGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLK 448 (595)
Q Consensus 370 ~~~~~~~l~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~ 448 (595)
.+..+.+ +.++++ .....+ .....+++|..|++++ +-+-+++ ..++++..|+
T Consensus 409 -------------~lkelvT~l~lsnn-~isfv~--~~l~~l~kLt~L~L~N----------N~Ln~LP-~e~~~lv~Lq 461 (565)
T KOG0472|consen 409 -------------ELKELVTDLVLSNN-KISFVP--LELSQLQKLTFLDLSN----------NLLNDLP-EEMGSLVRLQ 461 (565)
T ss_pred -------------HHHHHHHHHHhhcC-ccccch--HHHHhhhcceeeeccc----------chhhhcc-hhhhhhhhhh
Confidence 1111111 112221 111100 1112334444444432 1122332 3556677789
Q ss_pred EEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccC
Q 036689 449 ILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKF 528 (595)
Q Consensus 449 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 528 (595)
.|+|+. +++..+| .+..-+..|+.+-.+++ ++.++....-. ...+|+.|++.+ +.+..+|.+. ..|
T Consensus 462 ~LnlS~-NrFr~lP--~~~y~lq~lEtllas~n-qi~~vd~~~l~-------nm~nL~tLDL~n-Ndlq~IPp~L--gnm 527 (565)
T KOG0472|consen 462 TLNLSF-NRFRMLP--ECLYELQTLETLLASNN-QIGSVDPSGLK-------NMRNLTTLDLQN-NDLQQIPPIL--GNM 527 (565)
T ss_pred eecccc-cccccch--HHHhhHHHHHHHHhccc-cccccChHHhh-------hhhhcceeccCC-CchhhCChhh--ccc
Confidence 999987 6666653 22333344555544444 36666544111 377889999988 5788888877 459
Q ss_pred CCccEEEEeCCC
Q 036689 529 PSLEVLFVVGCP 540 (595)
Q Consensus 529 ~~L~~L~l~~C~ 540 (595)
.+|++|++.|.|
T Consensus 528 tnL~hLeL~gNp 539 (565)
T KOG0472|consen 528 TNLRHLELDGNP 539 (565)
T ss_pred cceeEEEecCCc
Confidence 999999999865
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.41 E-value=4.6e-15 Score=143.75 Aligned_cols=324 Identities=18% Similarity=0.196 Sum_probs=168.6
Q ss_pred CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh
Q 036689 48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA 127 (595)
Q Consensus 48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~ 127 (595)
..||.|.+.||..+..- ....+...+|++++|.+.+|.+++....... -..+++|+.|++..|..+++.......
T Consensus 138 g~lk~LSlrG~r~v~~s----slrt~~~~CpnIehL~l~gc~~iTd~s~~sl-a~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDS----SLRTFASNCPNIEHLALYGCKKITDSSLLSL-ARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcc----hhhHHhhhCCchhhhhhhcceeccHHHHHHH-HHhcchhhhhhhcccchhHHHHHHHHH
Confidence 46778888777554421 1223456778888888888876665422211 246788888888888888876655567
Q ss_pred hcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccc
Q 036689 128 KCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLED 207 (595)
Q Consensus 128 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (595)
..|++|++|++++|+.++.-- +..-.-.+..++.+...+|..+..-
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~g--------v~~~~rG~~~l~~~~~kGC~e~~le-------------------------- 258 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNG--------VQALQRGCKELEKLSLKGCLELELE-------------------------- 258 (483)
T ss_pred HhhhhHHHhhhccCchhhcCc--------chHHhccchhhhhhhhcccccccHH--------------------------
Confidence 778888888888887765410 0000001122333322233222110
Q ss_pred cccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeec
Q 036689 208 KLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRY 287 (595)
Q Consensus 208 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 287 (595)
.+ .... +.++-+.++++..|..+++.....+...+..|++|+.++
T Consensus 259 -----------------------------~l--~~~~----~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~ 303 (483)
T KOG4341|consen 259 -----------------------------AL--LKAA----AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS 303 (483)
T ss_pred -----------------------------HH--HHHh----ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC
Confidence 00 0000 123444455555555555543333344555666666666
Q ss_pred ccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCC
Q 036689 288 CKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEED 367 (595)
Q Consensus 288 c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 367 (595)
|..+++.+...... ..++|+.+.+.+|.++.+.........++.|+.+++.+|....+-
T Consensus 304 ~t~~~d~~l~aLg~-------~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-------------- 362 (483)
T KOG4341|consen 304 CTDITDEVLWALGQ-------HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-------------- 362 (483)
T ss_pred CCCCchHHHHHHhc-------CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--------------
Confidence 66554443322111 156666666666666655544444444666666666666443321
Q ss_pred CCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCc
Q 036689 368 KPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNL 447 (595)
Q Consensus 368 ~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L 447 (595)
.+.....+++.|+.+.+++|...+.-. +..+.. ...+...|
T Consensus 363 --------tL~sls~~C~~lr~lslshce~itD~g------------------------------i~~l~~-~~c~~~~l 403 (483)
T KOG4341|consen 363 --------TLASLSRNCPRLRVLSLSHCELITDEG------------------------------IRHLSS-SSCSLEGL 403 (483)
T ss_pred --------hHhhhccCCchhccCChhhhhhhhhhh------------------------------hhhhhh-cccccccc
Confidence 011223466777777777665443110 000000 12234556
Q ss_pred cEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccc
Q 036689 448 KILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLD 512 (595)
Q Consensus 448 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~ 512 (595)
+.+.+++|+.+++. .......+++|+.+++.+|..+..-+..... .++|++++..+..
T Consensus 404 ~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~------~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 404 EVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVTKEAISRFA------THLPNIKVHAYFA 461 (483)
T ss_pred ceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhhhhhhHHHH------hhCccceehhhcc
Confidence 77777777766664 3344566677777777777655444332211 1356666554443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=2.7e-12 Score=139.74 Aligned_cols=98 Identities=19% Similarity=0.151 Sum_probs=53.0
Q ss_pred CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689 223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD 302 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 302 (595)
++|+.|++++|+++.+ |.. ..+|+.|++++| .++.++.. ..+|++|++++|. ++.+|..
T Consensus 302 ~~L~~LdLS~N~L~~L-----p~l----p~~L~~L~Ls~N-~L~~LP~l-----p~~Lq~LdLS~N~-Ls~LP~l----- 360 (788)
T PRK15387 302 PGLQELSVSDNQLASL-----PAL----PSELCKLWAYNN-QLTSLPTL-----PSGLQELSVSDNQ-LASLPTL----- 360 (788)
T ss_pred cccceeECCCCccccC-----CCC----cccccccccccC-cccccccc-----ccccceEecCCCc-cCCCCCC-----
Confidence 4577777777766554 331 245666666654 44443321 1357777777765 6655431
Q ss_pred CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCcccccc
Q 036689 303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS 355 (595)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 355 (595)
.++|+.|++++ +.+..++.. ..+|+.|+++++ .++.+|.
T Consensus 361 -------p~~L~~L~Ls~-N~L~~LP~l-----~~~L~~LdLs~N-~Lt~LP~ 399 (788)
T PRK15387 361 -------PSELYKLWAYN-NRLTSLPAL-----PSGLKELIVSGN-RLTSLPV 399 (788)
T ss_pred -------Ccccceehhhc-cccccCccc-----ccccceEEecCC-cccCCCC
Confidence 34566666665 334444332 345677777654 3444444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=3.1e-12 Score=139.28 Aligned_cols=96 Identities=21% Similarity=0.164 Sum_probs=52.6
Q ss_pred ccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCC
Q 036689 224 NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQ 303 (595)
Q Consensus 224 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 303 (595)
+|+.|++.+|+++.+ |.. .++|++|+++++ .++.++. ..++|++|++.+|. ++.++..
T Consensus 223 ~L~~L~L~~N~Lt~L-----P~l----p~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~Ls~N~-L~~Lp~l------ 280 (788)
T PRK15387 223 HITTLVIPDNNLTSL-----PAL----PPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSNP-LTHLPAL------ 280 (788)
T ss_pred CCCEEEccCCcCCCC-----CCC----CCCCcEEEecCC-ccCcccC-----cccccceeeccCCc-hhhhhhc------
Confidence 566666766666654 432 466777777653 5555432 13466667666665 5554431
Q ss_pred CCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccc
Q 036689 304 VPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD 354 (595)
Q Consensus 304 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 354 (595)
+.+|+.|++.++ .+..++.. .++|+.|+++++ .++.+|
T Consensus 281 ------p~~L~~L~Ls~N-~Lt~LP~~-----p~~L~~LdLS~N-~L~~Lp 318 (788)
T PRK15387 281 ------PSGLCKLWIFGN-QLTSLPVL-----PPGLQELSVSDN-QLASLP 318 (788)
T ss_pred ------hhhcCEEECcCC-cccccccc-----ccccceeECCCC-ccccCC
Confidence 345666666663 34444332 456666666654 343343
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.39 E-value=3.2e-15 Score=144.76 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=53.7
Q ss_pred cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCc
Q 036689 444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGN 523 (595)
Q Consensus 444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 523 (595)
++.|+.+++.+|..+.+.-......+++.|++|.++.|..+++-..... +........|..+.+.+||.+++-....
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l---~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL---SSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh---hhccccccccceeeecCCCCchHHHHHH
Confidence 4567777776666555542233345667777777776665543311110 0111235567777777777666444332
Q ss_pred ccccCCCccEEEEeCCCCccc
Q 036689 524 YIFKFPSLEVLFVVGCPKMNI 544 (595)
Q Consensus 524 ~~~~~~~L~~L~l~~C~~l~~ 544 (595)
. ..|+.|+.+++.+|..+..
T Consensus 422 l-~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 422 L-SICRNLERIELIDCQDVTK 441 (483)
T ss_pred H-hhCcccceeeeechhhhhh
Confidence 2 2467777777777776654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.21 E-value=2.9e-11 Score=132.61 Aligned_cols=244 Identities=18% Similarity=0.181 Sum_probs=128.5
Q ss_pred ccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCC
Q 036689 224 NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQ 303 (595)
Q Consensus 224 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 303 (595)
+...|+++++.++.+ |..+ .++|+.|+++++ +++.++.. ..++|++|++++|. ++.++.. .
T Consensus 179 ~~~~L~L~~~~LtsL-----P~~I---p~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N~-LtsLP~~-l---- 239 (754)
T PRK15370 179 NKTELRLKILGLTTI-----PACI---PEQITTLILDNN-ELKSLPEN----LQGNIKTLYANSNQ-LTSIPAT-L---- 239 (754)
T ss_pred CceEEEeCCCCcCcC-----Cccc---ccCCcEEEecCC-CCCcCChh----hccCCCEEECCCCc-cccCChh-h----
Confidence 345666666655554 5433 346777777653 56554321 22467777777665 6655431 0
Q ss_pred CCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCcc
Q 036689 304 VPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKV 383 (595)
Q Consensus 304 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 383 (595)
.++|+.|+++++. +..++... ..+|+.|+++++ .++.+|. ..
T Consensus 240 ------~~~L~~L~Ls~N~-L~~LP~~l----~s~L~~L~Ls~N-~L~~LP~--------------------------~l 281 (754)
T PRK15370 240 ------PDTIQEMELSINR-ITELPERL----PSALQSLDLFHN-KISCLPE--------------------------NL 281 (754)
T ss_pred ------hccccEEECcCCc-cCcCChhH----hCCCCEEECcCC-ccCcccc--------------------------cc
Confidence 3456777777643 44444321 345777777543 4555554 12
Q ss_pred CCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccccc
Q 036689 384 FPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVA 463 (595)
Q Consensus 384 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 463 (595)
.++|+.|++++|+...+.. ...++|+.|++. .+.+..++. .+ .++|+.|++++| .++.++
T Consensus 282 ~~sL~~L~Ls~N~Lt~LP~-----~lp~sL~~L~Ls----------~N~Lt~LP~-~l--~~sL~~L~Ls~N-~Lt~LP- 341 (754)
T PRK15370 282 PEELRYLSVYDNSIRTLPA-----HLPSGITHLNVQ----------SNSLTALPE-TL--PPGLKTLEAGEN-ALTSLP- 341 (754)
T ss_pred CCCCcEEECCCCccccCcc-----cchhhHHHHHhc----------CCccccCCc-cc--cccceeccccCC-ccccCC-
Confidence 2466777777665432211 111345555552 233443332 11 246777777664 455442
Q ss_pred chHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCcc
Q 036689 464 SSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMN 543 (595)
Q Consensus 464 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~ 543 (595)
..+ .++|+.|++++|. +..++.. ..++|+.|++++| .++.+|... .++|+.|++++| ++.
T Consensus 342 ~~l---~~sL~~L~Ls~N~-L~~LP~~----------lp~~L~~LdLs~N-~Lt~LP~~l----~~sL~~LdLs~N-~L~ 401 (754)
T PRK15370 342 ASL---PPELQVLDVSKNQ-ITVLPET----------LPPTITTLDVSRN-ALTNLPENL----PAALQIMQASRN-NLV 401 (754)
T ss_pred hhh---cCcccEEECCCCC-CCcCChh----------hcCCcCEEECCCC-cCCCCCHhH----HHHHHHHhhccC-Ccc
Confidence 221 2567777777664 5544321 1346777777764 566665443 235777777664 455
Q ss_pred ccCCCCC----CCCCcceEEeccCC
Q 036689 544 IFTTGEL----STPPRVDVMYRNRG 564 (595)
Q Consensus 544 ~lp~~~~----~~~~L~~l~i~~~~ 564 (595)
.+|..+. ..+++..+.+.+|.
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCC
Confidence 6654432 23666666666544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.16 E-value=1.1e-10 Score=128.14 Aligned_cols=252 Identities=13% Similarity=0.099 Sum_probs=161.6
Q ss_pred cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
..+...|++.++.. +.++..+ .++|+.|+|++| .++.++.. .+++|++|+++++ +++.++.
T Consensus 177 ~~~~~~L~L~~~~L-tsLP~~I----p~~L~~L~Ls~N-~LtsLP~~--------l~~nL~~L~Ls~N-~LtsLP~---- 237 (754)
T PRK15370 177 KNNKTELRLKILGL-TTIPACI----PEQITTLILDNN-ELKSLPEN--------LQGNIKTLYANSN-QLTSIPA---- 237 (754)
T ss_pred ccCceEEEeCCCCc-CcCCccc----ccCCcEEEecCC-CCCcCChh--------hccCCCEEECCCC-ccccCCh----
Confidence 35677888887755 4444333 357889999888 67766322 2468999999985 6776521
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 180 (595)
...++|+.|++++| .++.+|. .+ ..+|+.|++++ +.+..+|.. ..++|+.|+++++ .++.
T Consensus 238 -~l~~~L~~L~Ls~N-~L~~LP~--~l--~s~L~~L~Ls~-N~L~~LP~~------------l~~sL~~L~Ls~N-~Lt~ 297 (754)
T PRK15370 238 -TLPDTIQEMELSIN-RITELPE--RL--PSALQSLDLFH-NKISCLPEN------------LPEELRYLSVYDN-SIRT 297 (754)
T ss_pred -hhhccccEEECcCC-ccCcCCh--hH--hCCCCEEECcC-CccCccccc------------cCCCCcEEECCCC-cccc
Confidence 22357899999985 5666653 22 24789999885 566666531 1247888888875 3443
Q ss_pred cccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689 181 FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR 260 (595)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~ 260 (595)
++.. -.++|+.|++++|.++.+ |..+ .++|+.|+++
T Consensus 298 LP~~------------------------------------lp~sL~~L~Ls~N~Lt~L-----P~~l---~~sL~~L~Ls 333 (754)
T PRK15370 298 LPAH------------------------------------LPSGITHLNVQSNSLTAL-----PETL---PPGLKTLEAG 333 (754)
T ss_pred Cccc------------------------------------chhhHHHHHhcCCccccC-----Cccc---cccceecccc
Confidence 3311 024678888888877655 5443 4688888888
Q ss_pred cCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccc
Q 036689 261 KCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALK 340 (595)
Q Consensus 261 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~ 340 (595)
+| .++.++. . -.++|+.|++++|. ++.+|. .. .++|+.|++++|. +..++... ..+|+
T Consensus 334 ~N-~Lt~LP~-~---l~~sL~~L~Ls~N~-L~~LP~-~l----------p~~L~~LdLs~N~-Lt~LP~~l----~~sL~ 391 (754)
T PRK15370 334 EN-ALTSLPA-S---LPPELQVLDVSKNQ-ITVLPE-TL----------PPTITTLDVSRNA-LTNLPENL----PAALQ 391 (754)
T ss_pred CC-ccccCCh-h---hcCcccEEECCCCC-CCcCCh-hh----------cCCcCEEECCCCc-CCCCCHhH----HHHHH
Confidence 76 4665432 1 23689999999887 776543 11 4678899998864 55555432 34688
Q ss_pred eeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCe
Q 036689 341 LLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIR 398 (595)
Q Consensus 341 ~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 398 (595)
.|+++++. +..+|..+. .....++++..|++.+|+..
T Consensus 392 ~LdLs~N~-L~~LP~sl~--------------------~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 392 IMQASRNN-LVRLPESLP--------------------HFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHhhccCC-cccCchhHH--------------------HHhhcCCCccEEEeeCCCcc
Confidence 88888753 555554211 12334577888888888743
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=7.5e-10 Score=123.48 Aligned_cols=100 Identities=26% Similarity=0.365 Sum_probs=56.9
Q ss_pred cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCcc--ccccccccccccce-eccccccccccc
Q 036689 444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQ--LAREEIVFNKLKML-SLLDLDSLTSFC 520 (595)
Q Consensus 444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~--~~~~~~~l~~L~~L-~l~~~~~l~~l~ 520 (595)
++++..+.+.+|..+.++ .|..-.++|+.|.+..|..++++....... .......|.++..+ .+.+.+.+.++.
T Consensus 746 f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~ 822 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLY 822 (889)
T ss_pred HHHHHHHHhhcccccccc---chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeE
Confidence 445555666666655554 232334666666666666555554332211 11123346666666 466666666555
Q ss_pred cCcccccCCCccEEEEeCCCCccccCCC
Q 036689 521 SGNYIFKFPSLEVLFVVGCPKMNIFTTG 548 (595)
Q Consensus 521 ~~~~~~~~~~L~~L~l~~C~~l~~lp~~ 548 (595)
..... ++.|+.+.+..||+++.+|..
T Consensus 823 ~~~l~--~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 823 WLPLS--FLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred ecccC--ccchhheehhcCcccccCccc
Confidence 44433 666888888888888877653
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.79 E-value=1.4e-10 Score=112.17 Aligned_cols=87 Identities=26% Similarity=0.347 Sum_probs=54.4
Q ss_pred CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689 381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN 460 (595)
Q Consensus 381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 460 (595)
++.+++|+.|++++|+...+-.+.+ .....++.|.| .-+++..+....+..+..|+.|++++ ++++.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aF--e~~a~l~eL~L----------~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it~ 336 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAF--EGAAELQELYL----------TRNKLEFVSSGMFQGLSGLKTLSLYD-NQITT 336 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhh--cchhhhhhhhc----------CcchHHHHHHHhhhccccceeeeecC-CeeEE
Confidence 4667888888888887665433322 23445666666 33445555444566677788888887 67776
Q ss_pred cccchHHhhcccccEEEEcCc
Q 036689 461 LVASSAAQSLVALVKMQVFGC 481 (595)
Q Consensus 461 ~~~~~~~~~l~~L~~L~l~~c 481 (595)
+ ....+..+.+|.+|++-.+
T Consensus 337 ~-~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 337 V-APGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred E-ecccccccceeeeeehccC
Confidence 6 3344566677777777543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=3.2e-10 Score=114.57 Aligned_cols=120 Identities=18% Similarity=0.021 Sum_probs=53.4
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc---hhhhhccCCCcEEEeecccccceecccc
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS---ASMLGSFEHLQHLEIRYCKGLQEIISKE 298 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 298 (595)
++.|++|++++|.++......++..+ ..+++|++|++++|. +++... ...+..+++|++|++++|. +++.....
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~ 240 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAA 240 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHH
Confidence 44566666666655432111112211 234567777776653 322111 1123455667777777765 44321111
Q ss_pred cCCCCCCCCcCCCcccEEeecCCCCccccc---CCCccccCcccceeeecCCC
Q 036689 299 GADDQVPPNFVFPQVTILRLVGLPELKCLY---PGMHTSEWPALKLLDVSACD 348 (595)
Q Consensus 299 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~---~~~~~~~~~~L~~L~l~~c~ 348 (595)
..... . ...+.|++|++.+|. +++.. .......+++|+.++++++.
T Consensus 241 l~~~~--~-~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 241 LASAL--L-SPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHH--h-ccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 11000 0 013567777777754 22100 00011124667777777654
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.78 E-value=1.6e-09 Score=109.46 Aligned_cols=270 Identities=19% Similarity=0.082 Sum_probs=153.7
Q ss_pred eecccccccccC-ccc-ccccccccEEEeccCCCCccccccc--cccccCCCcEEEcccCCCceEecCCCCCC---CcCC
Q 036689 3 TLKLKFNSVSIC-SKK-LQGIKDVEYLCLDKSQDVKNVLFDL--DREGFLQLKHLHVQNNPDFMCIVDSKERV---PLDD 75 (595)
Q Consensus 3 ~l~l~~~~~~~~-~~~-~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~i~~~~~~~---~~~~ 75 (595)
.|+|+.+.++.. ... +..+.+|+.|++.++.........+ .....++|++|.++++ .+... ...+. ....
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~--~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRI--PRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCc--chHHHHHHHHHH
Confidence 466666655433 222 3367789999999987632211111 1256778999999887 33311 11111 1233
Q ss_pred cCCCccEEeccCccCccccccccccccCC---CCccEEEecCCCCcccccc---hhhhhcC-CCCcEEEEcccCCcceee
Q 036689 76 AFPILESLNLYNLIKLERICQDRLSVQSF---NELKTIRVELCDQLSNIFL---LSAAKCL-PRLERIAVINCRNIQEIF 148 (595)
Q Consensus 76 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~l---~~L~~L~L~~c~~l~~~~~---~~~~~~l-~~L~~L~l~~c~~l~~~~ 148 (595)
.+++|++|+++++ .+.... +..+..+ ++|++|++++|. +.+... ...+..+ ++|++|++++|.......
T Consensus 79 ~~~~L~~L~l~~~-~~~~~~--~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 79 KGCGLQELDLSDN-ALGPDG--CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred hcCceeEEEccCC-CCChhH--HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 4679999999997 443211 1112233 459999999974 442111 1334556 899999999976432111
Q ss_pred cccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCcccee
Q 036689 149 VVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVL 228 (595)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 228 (595)
. ........+.+|++|+++++. +...... .+.......++|+.|
T Consensus 155 ~------~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-----------------------------~l~~~l~~~~~L~~L 198 (319)
T cd00116 155 E------ALAKALRANRDLKELNLANNG-IGDAGIR-----------------------------ALAEGLKANCNLEVL 198 (319)
T ss_pred H------HHHHHHHhCCCcCEEECcCCC-CchHHHH-----------------------------HHHHHHHhCCCCCEE
Confidence 0 001122345689999988754 2210000 011122345799999
Q ss_pred ecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhc----cCCCcEEEeecccccceecccccCCCCC
Q 036689 229 EMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGS----FEHLQHLEIRYCKGLQEIISKEGADDQV 304 (595)
Q Consensus 229 ~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~----l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 304 (595)
++++|.+++.....++..+ ..+++|++|++++|. +++.....++.. .+.|++|++.+|. +++........
T Consensus 199 ~L~~n~i~~~~~~~l~~~~-~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~--- 272 (319)
T cd00116 199 DLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAE--- 272 (319)
T ss_pred eccCCccChHHHHHHHHHh-cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHH---
Confidence 9999977654333333332 457899999999874 554322223333 3799999999997 65221111100
Q ss_pred CCCcCCCcccEEeecCCC
Q 036689 305 PPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 305 ~~~~~l~~L~~L~L~~~~ 322 (595)
....+++|+.++++++.
T Consensus 273 -~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 273 -VLAEKESLLELDLRGNK 289 (319)
T ss_pred -HHhcCCCccEEECCCCC
Confidence 01116889999999954
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.74 E-value=5.7e-10 Score=95.73 Aligned_cols=160 Identities=21% Similarity=0.303 Sum_probs=111.9
Q ss_pred ccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchh
Q 036689 46 GFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLS 125 (595)
Q Consensus 46 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~ 125 (595)
.+.+...|.|+++ .++.+++. ...+.+||.|++.++ .++++ +.++..+++|+.|++.- +.+..+| .
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppn------ia~l~nlevln~~nn-qie~l---p~~issl~klr~lnvgm-nrl~~lp--r 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPN------IAELKNLEVLNLSNN-QIEEL---PTSISSLPKLRILNVGM-NRLNILP--R 96 (264)
T ss_pred chhhhhhhhcccC-ceeecCCc------HHHhhhhhhhhcccc-hhhhc---Chhhhhchhhhheecch-hhhhcCc--c
Confidence 4566677788887 77777543 556778888888884 77776 55578888888888876 5666665 7
Q ss_pred hhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccc
Q 036689 126 AAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSL 205 (595)
Q Consensus 126 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (595)
.++.++.|+.||+..++.-+... + |+
T Consensus 97 gfgs~p~levldltynnl~e~~l---------------------------------p-----------------gn---- 122 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSL---------------------------------P-----------------GN---- 122 (264)
T ss_pred ccCCCchhhhhhccccccccccC---------------------------------C-----------------cc----
Confidence 78888888888888743221110 0 11
Q ss_pred cccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEe
Q 036689 206 EDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEI 285 (595)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l 285 (595)
.| .++.|+.|+++.|.+..+ |..+ +.+.+|+.|.+.+. .+-.++. .++.++.|++|.|
T Consensus 123 ---------ff----~m~tlralyl~dndfe~l-----p~dv-g~lt~lqil~lrdn-dll~lpk--eig~lt~lrelhi 180 (264)
T KOG0617|consen 123 ---------FF----YMTTLRALYLGDNDFEIL-----PPDV-GKLTNLQILSLRDN-DLLSLPK--EIGDLTRLRELHI 180 (264)
T ss_pred ---------hh----HHHHHHHHHhcCCCcccC-----Chhh-hhhcceeEEeeccC-chhhCcH--HHHHHHHHHHHhc
Confidence 11 255677778887766655 7766 78889999998874 4444433 3688999999999
Q ss_pred ecccccceecc
Q 036689 286 RYCKGLQEIIS 296 (595)
Q Consensus 286 ~~c~~l~~~~~ 296 (595)
.++. ++.+|+
T Consensus 181 qgnr-l~vlpp 190 (264)
T KOG0617|consen 181 QGNR-LTVLPP 190 (264)
T ss_pred ccce-eeecCh
Confidence 9887 877765
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.71 E-value=1e-09 Score=106.28 Aligned_cols=277 Identities=13% Similarity=0.100 Sum_probs=131.3
Q ss_pred ccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCC
Q 036689 224 NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQ 303 (595)
Q Consensus 224 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 303 (595)
.-..++|..|.|+.+ |...|+.+++|++|+|++ ++++.+.+. .+..++.|-.|-+.+.+.|++++...+.+
T Consensus 68 ~tveirLdqN~I~~i-----P~~aF~~l~~LRrLdLS~-N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-- 138 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-----PPGAFKTLHRLRRLDLSK-NNISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGG-- 138 (498)
T ss_pred cceEEEeccCCcccC-----Chhhccchhhhceecccc-cchhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhh--
Confidence 455667777767666 655556677777777775 456665443 34666666666666644477776644443
Q ss_pred CCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCcc
Q 036689 304 VPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKV 383 (595)
Q Consensus 304 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 383 (595)
+..|+.|.+..+. +..+..+. ...+++|..|.+.+. .+..++. ..+..
T Consensus 139 ------L~slqrLllNan~-i~Cir~~a-l~dL~~l~lLslyDn-~~q~i~~-----------------------~tf~~ 186 (498)
T KOG4237|consen 139 ------LSSLQRLLLNANH-INCIRQDA-LRDLPSLSLLSLYDN-KIQSICK-----------------------GTFQG 186 (498)
T ss_pred ------HHHHHHHhcChhh-hcchhHHH-HHHhhhcchhcccch-hhhhhcc-----------------------ccccc
Confidence 5566666665532 22111111 111455555555553 2333333 12344
Q ss_pred CCCcceEeccCCCCeeccCCCCCcccccCceeEEe---------ecccc-ccccccCccccccCCCCccc-cCCccEEeE
Q 036689 384 FPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQL---------KFDAS-AAVVSSCDNLLILLPSSSVS-FRNLKILEV 452 (595)
Q Consensus 384 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L---------~~~~~-~l~~~~~~~l~~~~~~~~~~-l~~L~~L~l 452 (595)
+.+++.+.+..++.... .+|+++.= ++..- .-+...-+.+..+....+.. ..++..-.-
T Consensus 187 l~~i~tlhlA~np~icd----------CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~ 256 (498)
T KOG4237|consen 187 LAAIKTLHLAQNPFICD----------CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLS 256 (498)
T ss_pred hhccchHhhhcCccccc----------cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhc
Confidence 56666666655553321 01111100 00000 00000000000000000000 001111112
Q ss_pred eCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCcc
Q 036689 453 SGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLE 532 (595)
Q Consensus 453 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~ 532 (595)
+.|...... |...++.+++|++|+++++. ++.|....+. ....++.|.+.. +++..+..+++. .+..|+
T Consensus 257 ~~d~~d~~c-P~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe-------~~a~l~eL~L~~-N~l~~v~~~~f~-~ls~L~ 325 (498)
T KOG4237|consen 257 SEDFPDSIC-PAKCFKKLPNLRKLNLSNNK-ITRIEDGAFE-------GAAELQELYLTR-NKLEFVSSGMFQ-GLSGLK 325 (498)
T ss_pred cccCcCCcC-hHHHHhhcccceEeccCCCc-cchhhhhhhc-------chhhhhhhhcCc-chHHHHHHHhhh-ccccce
Confidence 233322222 33345667777777776665 6666544333 355666666666 466666555543 456677
Q ss_pred EEEEeCCCCcccc-CCCCCCCCCcceEEeccC
Q 036689 533 VLFVVGCPKMNIF-TTGELSTPPRVDVMYRNR 563 (595)
Q Consensus 533 ~L~l~~C~~l~~l-p~~~~~~~~L~~l~i~~~ 563 (595)
.|.+++. +++.+ |..+..+.+|.+|.+-+|
T Consensus 326 tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 326 TLSLYDN-QITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred eeeecCC-eeEEEecccccccceeeeeehccC
Confidence 7777764 45554 444556666777666543
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=1.4e-08 Score=113.46 Aligned_cols=132 Identities=25% Similarity=0.250 Sum_probs=72.4
Q ss_pred cccCCccceeecccccceeecccCCCcccccc-CCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceeccc
Q 036689 219 KVALSNLEVLEMNKVNIEKIWHNQLPVAMFLC-FQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISK 297 (595)
Q Consensus 219 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 297 (595)
...+.+|+.|.+.++...++............ |+++..+.+.+|...+++.+. ...|+|+.|.+..|..++++.+.
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCCCH
Confidence 44678888998888855432111111111012 667777777788777765443 45688999999999877766543
Q ss_pred ccCCCCCC-CCcCCCcccEE-eecCCCCcccccCCCccccCcccceeeecCCCCcccccc
Q 036689 298 EGADDQVP-PNFVFPQVTIL-RLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS 355 (595)
Q Consensus 298 ~~~~~~~~-~~~~l~~L~~L-~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 355 (595)
........ ....+.++..+ .+.+.+.+..+...... ++.|+.+.+..||++..+|.
T Consensus 790 ~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~--~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 790 LKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS--FLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred HHHhhhcccEEecccccccceeeecCCCCceeEecccC--ccchhheehhcCcccccCcc
Confidence 22111000 11224444444 24443333333222111 56688888888877765544
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.58 E-value=2.5e-09 Score=91.87 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=100.9
Q ss_pred ecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEE
Q 036689 4 LKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESL 83 (595)
Q Consensus 4 l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L 83 (595)
|.|+.|.++..+.+|+.+++|+.|++.++.. .+++..+ ..++.|++|.+.-+ .+..++ . .+.+||-||+|
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~i--ssl~klr~lnvgmn-rl~~lp-r-----gfgs~p~levl 107 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSI--SSLPKLRILNVGMN-RLNILP-R-----GFGSFPALEVL 107 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhh--hhchhhhheecchh-hhhcCc-c-----ccCCCchhhhh
Confidence 4566666555577788888999999988866 5666666 78899999988644 554442 2 57789999999
Q ss_pred eccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccccc
Q 036689 84 NLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIE 163 (595)
Q Consensus 84 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 163 (595)
|+.++ ++.+- ..+..+..+..|+.|.+++ +.+..+| +.++++++|+.|.++++ .+-.+| .++..
T Consensus 108 dltyn-nl~e~-~lpgnff~m~tlralyl~d-ndfe~lp--~dvg~lt~lqil~lrdn-dll~lp----------keig~ 171 (264)
T KOG0617|consen 108 DLTYN-NLNEN-SLPGNFFYMTTLRALYLGD-NDFEILP--PDVGKLTNLQILSLRDN-DLLSLP----------KEIGD 171 (264)
T ss_pred hcccc-ccccc-cCCcchhHHHHHHHHHhcC-CCcccCC--hhhhhhcceeEEeeccC-chhhCc----------HHHHH
Confidence 99985 55432 1222244556778888888 5666665 67888889999888884 344444 24556
Q ss_pred ccccceEecCCC
Q 036689 164 FGQLSTLCLGSL 175 (595)
Q Consensus 164 ~~~L~~L~l~~~ 175 (595)
+.+|+.|.+.+.
T Consensus 172 lt~lrelhiqgn 183 (264)
T KOG0617|consen 172 LTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHhcccc
Confidence 777888877653
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.1e-08 Score=100.57 Aligned_cols=238 Identities=17% Similarity=0.205 Sum_probs=133.7
Q ss_pred EEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCccccc-chhhhhcC
Q 036689 52 HLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIF-LLSAAKCL 130 (595)
Q Consensus 52 ~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~-~~~~~~~l 130 (595)
.+.+++ ..++.+.-+ ....-...+.+|+++.+.++ .+...... .-...|++++.|+|+. +-+.+.. ....+..+
T Consensus 97 ~~si~n-K~vE~iGfD-ki~akQsn~kkL~~IsLdn~-~V~~~~~~-~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqL 171 (505)
T KOG3207|consen 97 VLSISN-KQVEFIGFD-KIAAKQSNLKKLREISLDNY-RVEDAGIE-EYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQL 171 (505)
T ss_pred HhhhcC-ceeEEecHH-HHHHHhhhHHhhhheeecCc-cccccchh-hhhhhCCcceeecchh-hhHHhHHHHHHHHHhc
Confidence 344433 355555321 11223456777888888875 44433211 1135678888888887 4444432 23566778
Q ss_pred CCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccccccccc
Q 036689 131 PRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLD 210 (595)
Q Consensus 131 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (595)
++|+.|+++.+ .+....... ....+++|+.|.++.|---.
T Consensus 172 p~Le~LNls~N-rl~~~~~s~--------~~~~l~~lK~L~l~~CGls~------------------------------- 211 (505)
T KOG3207|consen 172 PSLENLNLSSN-RLSNFISSN--------TTLLLSHLKQLVLNSCGLSW------------------------------- 211 (505)
T ss_pred ccchhcccccc-cccCCcccc--------chhhhhhhheEEeccCCCCH-------------------------------
Confidence 88888888873 333221110 11135667777776653110
Q ss_pred CCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccc
Q 036689 211 ISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKG 290 (595)
Q Consensus 211 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 290 (595)
..+......+|+|++|++.+|+. +.....+.. .++.|+.|+|++.+.+ +.......+.+|.|+.|.++.|.
T Consensus 212 --k~V~~~~~~fPsl~~L~L~~N~~--~~~~~~~~~---i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tg- 282 (505)
T KOG3207|consen 212 --KDVQWILLTFPSLEVLYLEANEI--ILIKATSTK---ILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTG- 282 (505)
T ss_pred --HHHHHHHHhCCcHHHhhhhcccc--cceecchhh---hhhHHhhccccCCccc-ccccccccccccchhhhhccccC-
Confidence 00111123578888999888841 111222443 4788899999876444 33434456888889999888887
Q ss_pred cceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecC
Q 036689 291 LQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSA 346 (595)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 346 (595)
+.++...+... .--...+|+|+.|++..++ +.+|..-.+...+++|+.|.+..
T Consensus 283 i~si~~~d~~s--~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 283 IASIAEPDVES--LDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cchhcCCCccc--hhhhcccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence 77664322210 0112248899999998844 55554433444467777777643
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=7.6e-09 Score=101.65 Aligned_cols=188 Identities=15% Similarity=0.221 Sum_probs=100.7
Q ss_pred ccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc-hhhhhccCCCcEEEeecccccceecccc
Q 036689 220 VALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS-ASMLGSFEHLQHLEIRYCKGLQEIISKE 298 (595)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 298 (595)
.++..|++..+.++.+...+... .. ..|++++.|+|++. -+..+.+ ..++.++|+|+.|+++.+. +.......
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~---~~-k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEE---YS-KILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCccccccchhh---hh-hhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCcccc
Confidence 34566777777766555443221 11 45778888888753 3333322 2356778888888887776 33222111
Q ss_pred cCCCCCCCCcCCCcccEEeecCCCCc-ccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 036689 299 GADDQVPPNFVFPQVTILRLVGLPEL-KCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPL 377 (595)
Q Consensus 299 ~~~~~~~~~~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 377 (595)
... .+++|+.|.++.|.-- .++ +.....||+|+.|++..+..+.....
T Consensus 192 ~~~-------~l~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~~~~~~---------------------- 240 (505)
T KOG3207|consen 192 TTL-------LLSHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEIILIKAT---------------------- 240 (505)
T ss_pred chh-------hhhhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhcccccceecc----------------------
Confidence 111 2677778887777521 111 11233477777777776643221111
Q ss_pred CCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCC
Q 036689 378 FLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKK 457 (595)
Q Consensus 378 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~ 457 (595)
..+.+..|++|++++|+.++.... .....++.|+.|+++.| +
T Consensus 241 --~~~i~~~L~~LdLs~N~li~~~~~-----------------------------------~~~~~l~~L~~Lnls~t-g 282 (505)
T KOG3207|consen 241 --STKILQTLQELDLSNNNLIDFDQG-----------------------------------YKVGTLPGLNQLNLSST-G 282 (505)
T ss_pred --hhhhhhHHhhccccCCcccccccc-----------------------------------cccccccchhhhhcccc-C
Confidence 024566777777777765532110 02334667777777764 3
Q ss_pred CcccccchH-----HhhcccccEEEEcCcc
Q 036689 458 LTNLVASSA-----AQSLVALVKMQVFGCR 482 (595)
Q Consensus 458 l~~~~~~~~-----~~~l~~L~~L~l~~c~ 482 (595)
+.++-.... ...+++|++|++..++
T Consensus 283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 283 IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cchhcCCCccchhhhcccccceeeecccCc
Confidence 444311111 2346778888877765
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7.6e-09 Score=96.71 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=41.3
Q ss_pred CcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcce
Q 036689 75 DAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQE 146 (595)
Q Consensus 75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 146 (595)
..+.+|+.|.+.+. .+..-. ...+.+=.+|+.|+++.|+.+++....-++++|+.|.+|++++|....+
T Consensus 207 s~C~kLk~lSlEg~-~LdD~I--~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGL-RLDDPI--VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHhhhhcccccc-ccCcHH--HHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 34566666666664 343311 1114455667777777777777654445666777777777777765544
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.2e-08 Score=92.59 Aligned_cols=187 Identities=16% Similarity=0.132 Sum_probs=114.9
Q ss_pred CccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccccccc
Q 036689 106 ELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEV 185 (595)
Q Consensus 106 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 185 (595)
.||++||++ ..++.-....+++.|.+|+.|.+.|. .+.+- +...+.+-.+|+.|+++.|+.++.+....
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~---------I~~~iAkN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGL-RLDDP---------IVNTIAKNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccc-ccCcH---------HHHHHhccccceeeccccccccchhHHHH
Confidence 588888887 45655444466777888888888773 32221 11245566788888888888777654322
Q ss_pred ccccccccccccccCccccccccccCCCccccccccCCccceeeccccc-ceeecccCCCccccccCCCccEEEEecCCC
Q 036689 186 KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVN-IEKIWHNQLPVAMFLCFQNLTRLILRKCPK 264 (595)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 264 (595)
++ .+++.|..|++++|. .++... ..-. .--++|+.|+++||..
T Consensus 255 -----------------------------l~---~scs~L~~LNlsWc~l~~~~Vt-v~V~---hise~l~~LNlsG~rr 298 (419)
T KOG2120|consen 255 -----------------------------LL---SSCSRLDELNLSWCFLFTEKVT-VAVA---HISETLTQLNLSGYRR 298 (419)
T ss_pred -----------------------------HH---HhhhhHhhcCchHhhccchhhh-HHHh---hhchhhhhhhhhhhHh
Confidence 11 257788888888883 333311 1111 2257888888888743
Q ss_pred C-ccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceee
Q 036689 265 L-KYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLD 343 (595)
Q Consensus 265 l-~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~ 343 (595)
- ..--.......+|+|.+|+++.|..++.-...++.. |+.|++|.++.|..+..--. ......|+|.+|+
T Consensus 299 nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k--------f~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLd 369 (419)
T KOG2120|consen 299 NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK--------FNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLD 369 (419)
T ss_pred hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh--------cchheeeehhhhcCCChHHe-eeeccCcceEEEE
Confidence 2 111112245778888889888887665533323332 88888888888876532111 1122368888888
Q ss_pred ecCCC
Q 036689 344 VSACD 348 (595)
Q Consensus 344 l~~c~ 348 (595)
+.+|-
T Consensus 370 v~g~v 374 (419)
T KOG2120|consen 370 VFGCV 374 (419)
T ss_pred ecccc
Confidence 88773
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=7.5e-07 Score=79.90 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=50.8
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
...++++|+|.++.... ...+. ..+.+|++|++++| +++.+. ....++.|++|+++++ .++.+..
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~-~~l~~L~~L~Ls~N-~I~~l~-------~l~~L~~L~~L~L~~N-~I~~i~~--- 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLG-ATLDKLEVLDLSNN-QITKLE-------GLPGLPRLKTLDLSNN-RISSISE--- 81 (175)
T ss_dssp ---------------------S---TT-TT--EEE-TTS---S--T-------T----TT--EEE--SS----S-CH---
T ss_pred ccccccccccccccccc--ccchh-hhhcCCCEEECCCC-CCcccc-------CccChhhhhhcccCCC-CCCcccc---
Confidence 44568999999998732 23341 36889999999998 788773 3556899999999995 7776521
Q ss_pred cc-cCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccc-ccccccccceEecCCC
Q 036689 100 SV-QSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDH-QKIEFGQLSTLCLGSL 175 (595)
Q Consensus 100 ~~-~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~ 175 (595)
.+ ..+|+|++|++++ +++.++.....++.+++|++|++.+++-... . .-+. -+..+|+|+.|+-...
T Consensus 82 ~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~-------~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K-------NYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS-T-------THHHHHHHH-TT-SEETTEET
T ss_pred chHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccch-h-------hHHHHHHHHcChhheeCCEEc
Confidence 12 3589999999998 6777765556778899999999998664321 0 1111 2456788998875543
No 32
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.23 E-value=4.1e-08 Score=105.25 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=71.7
Q ss_pred cCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecc-cccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc
Q 036689 250 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYC-KGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY 328 (595)
Q Consensus 250 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 328 (595)
.+++|+.+.+.+|..+.+......+..+++|+.|++++| ......+.... .....+++|+.|+++.+..+.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL-----LLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh-----hhhhhcCCcCccchhhhhccCchh
Confidence 367777777777777666332334567777888887763 22222211000 011126777788887777655554
Q ss_pred CCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCee
Q 036689 329 PGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRM 399 (595)
Q Consensus 329 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 399 (595)
.......|++|+.|.+.+|..++.... ..+...+++|++|++++|..++
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl----------------------~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGL----------------------VSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHH----------------------HHHHHhcCcccEEeeecCccch
Confidence 443444477888888777766443211 1223467778888888777653
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=9e-06 Score=82.01 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=19.1
Q ss_pred cccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccc
Q 036689 312 QVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD 354 (595)
Q Consensus 312 ~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 354 (595)
+|++|.+.+|..+..++... .++|+.|.+.+|..+..+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCcEEEccCCCCcccCCchh----hhhhhheEccCcccccccc
Confidence 45555555555554443221 2455556555555444333
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=2.3e-06 Score=76.76 Aligned_cols=110 Identities=23% Similarity=0.352 Sum_probs=35.9
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
.....+++|+|.++ .++.+. . ....+.+|++|+++++ .++.+. .+..+++|++|++++ +.++++..
T Consensus 16 ~n~~~~~~L~L~~n-~I~~Ie-~-----L~~~l~~L~~L~Ls~N-~I~~l~----~l~~L~~L~~L~L~~-N~I~~i~~- 81 (175)
T PF14580_consen 16 NNPVKLRELNLRGN-QISTIE-N-----LGATLDKLEVLDLSNN-QITKLE----GLPGLPRLKTLDLSN-NRISSISE- 81 (175)
T ss_dssp ----------------------S-------TT-TT--EEE-TTS---S--T----T----TT--EEE--S-S---S-CH-
T ss_pred cccccccccccccc-cccccc-c-----hhhhhcCCCEEECCCC-CCcccc----CccChhhhhhcccCC-CCCCcccc-
Confidence 34556888999888 777662 1 2235788899999985 677652 256788899999988 67777642
Q ss_pred hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689 125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE 177 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (595)
.....+++|++|++++ +.+..+... .....+++|+.|++.+.+-
T Consensus 82 ~l~~~lp~L~~L~L~~-N~I~~l~~l--------~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSN-NKISDLNEL--------EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp HHHHH-TT--EEE-TT-S---SCCCC--------GGGGG-TT--EEE-TT-GG
T ss_pred chHHhCCcCCEEECcC-CcCCChHHh--------HHHHcCCCcceeeccCCcc
Confidence 2334688999999887 555544211 2344578888998887664
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.10 E-value=2.8e-07 Score=98.82 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=38.7
Q ss_pred CCccceeecccc-cceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeeccccc
Q 036689 222 LSNLEVLEMNKV-NIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGL 291 (595)
Q Consensus 222 l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 291 (595)
++.|+.|+++++ .+++.+...+. ..+++|+.|.+.+|..+++..-..++..++.|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~----~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALA----SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHH----hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 456666666666 34444222221 2366777777777766555444445566777777777777655
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=1.9e-06 Score=80.95 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=40.0
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
+++|+.|++++|.++.+ .-|- ..+.|++.|.+++ +.+.++ +.++.+-+|.+|++++++ +..+......+
T Consensus 328 L~~L~~LDLS~N~Ls~~-----~Gwh-~KLGNIKtL~La~-N~iE~L---SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG 396 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAEC-----VGWH-LKLGNIKTLKLAQ-NKIETL---SGLRKLYSLVNLDLSSNQ-IEELDEVNHIG 396 (490)
T ss_pred cccceEeecccchhHhh-----hhhH-hhhcCEeeeehhh-hhHhhh---hhhHhhhhheeccccccc-hhhHHHhcccc
Confidence 45555666666544433 1121 2355566666654 233332 234555566666666555 44443322222
Q ss_pred CCCCCCcCCCcccEEeecCCC
Q 036689 302 DQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~ 322 (595)
.+|.|+.+.+.++|
T Consensus 397 -------~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 397 -------NLPCLETLRLTGNP 410 (490)
T ss_pred -------cccHHHHHhhcCCC
Confidence 25555555555544
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.96 E-value=1.9e-05 Score=57.83 Aligned_cols=58 Identities=34% Similarity=0.396 Sum_probs=25.2
Q ss_pred CccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689 79 ILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC 141 (595)
Q Consensus 79 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 141 (595)
+|++|+++++ +++.+..+ .+..+++|++|++++ +.++.+++ ..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~--~f~~l~~L~~L~l~~-N~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPD--SFSNLPNLETLDLSN-NNLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTT--TTTTGTTESEEEETS-SSESEEET-TTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHH--HHcCCCCCCEeEccC-CccCccCH-HHHcCCCCCCEEeCcCC
Confidence 3444444443 44443221 134445555555554 23443332 34444555555555443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.93 E-value=1.8e-05 Score=58.00 Aligned_cols=60 Identities=25% Similarity=0.322 Sum_probs=48.4
Q ss_pred CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCC
Q 036689 48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCD 116 (595)
Q Consensus 48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~ 116 (595)
|+|++|++++| .++.+++. .+..+++|++|+++++ +++.+..+ .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~-----~f~~l~~L~~L~l~~N-~l~~i~~~--~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPD-----SFSNLPNLETLDLSNN-NLTSIPPD--AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTT-----TTTTGTTESEEEETSS-SESEEETT--TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHH-----HHcCCCCCCEeEccCC-ccCccCHH--HHcCCCCCCEEeCcCCc
Confidence 67899999998 88888655 6778899999999985 78777443 37889999999999863
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.92 E-value=7.9e-06 Score=76.89 Aligned_cols=229 Identities=18% Similarity=0.157 Sum_probs=130.7
Q ss_pred hhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC--CcccccCCCccccCcccceeeecCCCCcc
Q 036689 274 LGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP--ELKCLYPGMHTSEWPALKLLDVSACDQVT 351 (595)
Q Consensus 274 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 351 (595)
+.-+..|++|.++....-.+-.- ....-.+.....|.+|+.+.++.|. ++.++... -|.|+++.+.+..- .
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sn-i~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~-----kptl~t~~v~~s~~-~ 250 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSN-IIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELL-----KPTLQTICVHNTTI-Q 250 (490)
T ss_pred HHhhhheeEEEecCCCCCCcccc-ccccccccchHHhhhhheeeeeccchhheeceeec-----Cchhheeeeecccc-c
Confidence 34456677777665442111000 0000011223337788888888876 33333221 47888888765421 1
Q ss_pred ccccccccccCCCCCCCC--CCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeecccccccccc
Q 036689 352 VFDSELFSFCESSEEDKP--DIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSS 429 (595)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 429 (595)
..|.-.+. ......+. ......+.......-+.|+++++++|.... .+.+....|.++.|++++
T Consensus 251 ~~~~l~pe--~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~--------- 316 (490)
T KOG1259|consen 251 DVPSLLPE--TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQ--------- 316 (490)
T ss_pred ccccccch--hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh---hhhhhhhccceeEEeccc---------
Confidence 11110000 00000000 111112222222334678899999986443 234566778999999854
Q ss_pred CccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCcccccccccccccccee
Q 036689 430 CDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLS 509 (595)
Q Consensus 430 ~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~ 509 (595)
+.+..+. .++.+++|+.|++++ +.+..+. +|-..+-+.++|.+.++. ++++..- + .+-+|..|+
T Consensus 317 -N~i~~v~--nLa~L~~L~~LDLS~-N~Ls~~~--Gwh~KLGNIKtL~La~N~-iE~LSGL-~--------KLYSLvnLD 380 (490)
T KOG1259|consen 317 -NRIRTVQ--NLAELPQLQLLDLSG-NLLAECV--GWHLKLGNIKTLKLAQNK-IETLSGL-R--------KLYSLVNLD 380 (490)
T ss_pred -cceeeeh--hhhhcccceEeeccc-chhHhhh--hhHhhhcCEeeeehhhhh-Hhhhhhh-H--------hhhhheecc
Confidence 4455443 366788999999998 6666652 555677888999988775 6666421 1 266788888
Q ss_pred ccccccccccccCcccccCCCccEEEEeCCC
Q 036689 510 LLDLDSLTSFCSGNYIFKFPSLEVLFVVGCP 540 (595)
Q Consensus 510 l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~ 540 (595)
+++ ++++.+........+|.|+.+.+.+.|
T Consensus 381 l~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 381 LSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 888 467767655555679999999998876
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=0.00011 Score=74.18 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=23.5
Q ss_pred ccccceeccccccccccccCcccccCCCccEEEEeCC
Q 036689 503 NKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGC 539 (595)
Q Consensus 503 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C 539 (595)
++|+.|.+.+|..+. +|.+. .++|+.|.+..+
T Consensus 156 sSLk~L~Is~c~~i~-LP~~L----P~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKL----PESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Ccccc----cccCcEEEeccc
Confidence 579999999987553 44333 457999998765
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=1.9e-05 Score=86.38 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=94.3
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.-.+||+|++++...+..-.+...+..+|.|++|.+.+- .+ ..+++.....+||+|+.||++++ ++..+ .
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~----~~~dF~~lc~sFpNL~sLDIS~T-nI~nl----~ 189 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QF----DNDDFSQLCASFPNLRSLDISGT-NISNL----S 189 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-ee----cchhHHHHhhccCccceeecCCC-CccCc----H
Confidence 346899999988766644444444578999999999875 22 23334446679999999999996 77776 3
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCC
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGS 174 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (595)
+++.+++|+.|.+.+-+. ........+-++++|+.||++.-...... ..... -.+....+|+|+.|+.++
T Consensus 190 GIS~LknLq~L~mrnLe~-e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~q---Ylec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEF-ESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQ---YLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccccHHHHhccCCCC-CchhhHHHHhcccCCCeeeccccccccch-HHHHH---HHHhcccCccccEEecCC
Confidence 388999999999998644 33222255668999999999984333221 00000 001223378999998875
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=1.1e-05 Score=75.96 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=40.6
Q ss_pred CCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccC
Q 036689 251 FQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYP 329 (595)
Q Consensus 251 l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 329 (595)
||++..+.+..|+ +++.........+|.+-.|.++.++ +.+....+... .||.|..|++...|-+..+..
T Consensus 198 Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln-------~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALN-------GFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred cccchheeeecCc-ccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHc-------CCchhheeeccCCcccccccC
Confidence 6777777776663 4444444444566666666666555 55443322222 277888888877776554433
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.50 E-value=6.3e-06 Score=84.17 Aligned_cols=197 Identities=20% Similarity=0.206 Sum_probs=109.7
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+..-...+++.+.. ..++.++ ..|-.|+.|.|..+ -+..++. ....+..|..|+|+.+ .+..+ +.
T Consensus 73 ~ltdt~~aDlsrNR~-~elp~~~--~~f~~Le~liLy~n-~~r~ip~------~i~~L~~lt~l~ls~N-qlS~l---p~ 138 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRF-SELPEEA--CAFVSLESLILYHN-CIRTIPE------AICNLEALTFLDLSSN-QLSHL---PD 138 (722)
T ss_pred cccchhhhhcccccc-ccCchHH--HHHHHHHHHHHHhc-cceecch------hhhhhhHHHHhhhccc-hhhcC---Ch
Confidence 566666777777766 4555555 66777777777666 5665532 2445566666666663 44444 32
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
.+..+| |+.|-+++ ++++.+| ..++.++.|..|+.+.| .+..++. +.+.+..|+.|.+.... +.
T Consensus 139 ~lC~lp-Lkvli~sN-Nkl~~lp--~~ig~~~tl~~ld~s~n-ei~slps----------ql~~l~slr~l~vrRn~-l~ 202 (722)
T KOG0532|consen 139 GLCDLP-LKVLIVSN-NKLTSLP--EEIGLLPTLAHLDVSKN-EIQSLPS----------QLGYLTSLRDLNVRRNH-LE 202 (722)
T ss_pred hhhcCc-ceeEEEec-CccccCC--cccccchhHHHhhhhhh-hhhhchH----------HhhhHHHHHHHHHhhhh-hh
Confidence 344444 77777777 5677666 44556777777777653 3444332 23334444444443321 11
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
.++.+ +. .-.|..||++.|++..+ |..+ ..+..|++|-|
T Consensus 203 ~lp~E----------------------------------l~-~LpLi~lDfScNkis~i-----Pv~f-r~m~~Lq~l~L 241 (722)
T KOG0532|consen 203 DLPEE----------------------------------LC-SLPLIRLDFSCNKISYL-----PVDF-RKMRHLQVLQL 241 (722)
T ss_pred hCCHH----------------------------------Hh-CCceeeeecccCceeec-----chhh-hhhhhheeeee
Confidence 11110 11 22466778877777777 7665 56777777777
Q ss_pred ecCCCCccccchhh--hhccCCCcEEEeeccc
Q 036689 260 RKCPKLKYIFSASM--LGSFEHLQHLEIRYCK 289 (595)
Q Consensus 260 ~~c~~l~~l~~~~~--~~~l~~L~~L~l~~c~ 289 (595)
.+ +-++. +|..+ -+..-=.|+|++.-|+
T Consensus 242 en-NPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 242 EN-NPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cc-CCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 74 45554 34321 1222235667776664
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.47 E-value=0.00015 Score=75.62 Aligned_cols=82 Identities=23% Similarity=0.329 Sum_probs=43.1
Q ss_pred CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689 223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD 302 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 302 (595)
..|+++.++++..... +..+ ..+.++..+.+.+ ..+... ...++.++.+++|+++++. +++++. ..
T Consensus 209 ~~L~~l~~~~N~~~~~-----~~~~-~~~~~l~~l~l~~-n~~~~~--~~~~~~l~~l~~L~~s~n~-i~~i~~--~~-- 274 (394)
T COG4886 209 SALEELDLSNNSIIEL-----LSSL-SNLKNLSGLELSN-NKLEDL--PESIGNLSNLETLDLSNNQ-ISSISS--LG-- 274 (394)
T ss_pred hhhhhhhhcCCcceec-----chhh-hhcccccccccCC-ceeeec--cchhccccccceecccccc-cccccc--cc--
Confidence 3466666666632211 2211 3455555555443 233321 1234667777777777776 666644 11
Q ss_pred CCCCCcCCCcccEEeecCCCCc
Q 036689 303 QVPPNFVFPQVTILRLVGLPEL 324 (595)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~~~~l 324 (595)
.+.+|+.|++++....
T Consensus 275 ------~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 275 ------SLTNLRELDLSGNSLS 290 (394)
T ss_pred ------ccCccCEEeccCcccc
Confidence 1667777777774433
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.32 E-value=2e-05 Score=76.04 Aligned_cols=244 Identities=21% Similarity=0.131 Sum_probs=133.0
Q ss_pred eecccccccccC-c----ccccccccccEEEeccCCCCc---ccccccc-----ccccCCCcEEEcccCC-CceEecCCC
Q 036689 3 TLKLKFNSVSIC-S----KKLQGIKDVEYLCLDKSQDVK---NVLFDLD-----REGFLQLKHLHVQNNP-DFMCIVDSK 68 (595)
Q Consensus 3 ~l~l~~~~~~~~-~----~~~~~l~~L~~L~L~~~~~~~---~~~~~~~-----~~~l~~L~~L~L~~~~-~l~~i~~~~ 68 (595)
.|+|++|++..- . +.+...++|+..+++++---. .++..+. ..++|+|++|+|+.|. +.+.+.
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~--- 110 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR--- 110 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH---
Confidence 467777876544 3 334456678888887664311 1221110 1567899999999883 111110
Q ss_pred CCCCcCCcCCCccEEeccCccCcccccc-----------ccccccCCCCccEEEecCCCCcccccc---hhhhhcCCCCc
Q 036689 69 ERVPLDDAFPILESLNLYNLIKLERICQ-----------DRLSVQSFNELKTIRVELCDQLSNIFL---LSAAKCLPRLE 134 (595)
Q Consensus 69 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----------~~~~~~~l~~L~~L~L~~c~~l~~~~~---~~~~~~l~~L~ 134 (595)
.+.....++..|++|.+.+| .+....- ....+.+-++||++...+ +.+.+.+. ...++..+.|+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred HHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccc
Confidence 01113456788999999998 3322100 011134567899999988 56665432 24556678899
Q ss_pred EEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCc
Q 036689 135 RIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSP 214 (595)
Q Consensus 135 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (595)
++.+..+..-.. + . .-
T Consensus 189 evr~~qN~I~~e-----G--~---------------------------------------------------------~a 204 (382)
T KOG1909|consen 189 EVRLSQNGIRPE-----G--V---------------------------------------------------------TA 204 (382)
T ss_pred eEEEecccccCc-----h--h---------------------------------------------------------HH
Confidence 998877432111 0 0 00
Q ss_pred cccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc----hhhhhccCCCcEEEeecccc
Q 036689 215 LFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS----ASMLGSFEHLQHLEIRYCKG 290 (595)
Q Consensus 215 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~----~~~~~~l~~L~~L~l~~c~~ 290 (595)
++.+...+++|++|++..|-++.-+...+...+ ..+++|+.|++++|. ++.--. -.+-...|.|+.|.+.+|.
T Consensus 205 l~eal~~~~~LevLdl~DNtft~egs~~LakaL-~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe- 281 (382)
T KOG1909|consen 205 LAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL-SSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE- 281 (382)
T ss_pred HHHHHHhCCcceeeecccchhhhHHHHHHHHHh-cccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-
Confidence 122233577777777777755543322211111 345788888888873 322111 1122446788888888876
Q ss_pred cceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689 291 LQEIISKEGADDQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 322 (595)
++.-...... ......|.|..|+|++|.
T Consensus 282 It~da~~~la----~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 282 ITRDAALALA----ACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hHHHHHHHHH----HHHhcchhhHHhcCCccc
Confidence 5432211000 011116788888888854
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=7.6e-05 Score=70.44 Aligned_cols=167 Identities=20% Similarity=0.200 Sum_probs=90.8
Q ss_pred ccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceeccccc
Q 036689 220 VALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEG 299 (595)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 299 (595)
.++|.|++|+++.|++....+ ..| ....+|+.|-+.+. .+.--...+++..+|.+++|.++.+. +..+-..+.
T Consensus 94 e~lP~l~~LNls~N~L~s~I~-~lp----~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~ 166 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIK-SLP----LPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDN 166 (418)
T ss_pred hcCccceEeeccCCcCCCccc-cCc----ccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccch-hhhhccccc
Confidence 357888888888886653211 122 13678999888763 33322233356788889999888774 333222111
Q ss_pred CCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCC
Q 036689 300 ADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFL 379 (595)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 379 (595)
..+ .--+.+++|.+.+|+...-.........||++..+.+..||--+.-.. .
T Consensus 167 c~e-----~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-----------------------k 218 (418)
T KOG2982|consen 167 CIE-----DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-----------------------K 218 (418)
T ss_pred ccc-----ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc-----------------------c
Confidence 110 013567777777775321111111122389999999988864221111 1
Q ss_pred cCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccc
Q 036689 380 PEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDA 422 (595)
Q Consensus 380 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 422 (595)
....++.+..|++..++.. .|+.......+++|+.|.+.+.|
T Consensus 219 ~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cCCCCCcchhhhhcccccc-cHHHHHHHcCCchhheeeccCCc
Confidence 1234555556666554432 33333344466777777776554
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.25 E-value=0.0003 Score=73.36 Aligned_cols=106 Identities=26% Similarity=0.378 Sum_probs=70.4
Q ss_pred CCccceeecccccceeecccCCCccccccCC-CccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQ-NLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~-~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+.++.|++.+++++++ +... ..+. +|+.|++++ +.+..++ ..++.+++|+.|++++++ +.+++....
T Consensus 115 ~~~l~~L~l~~n~i~~i-----~~~~-~~~~~nL~~L~l~~-N~i~~l~--~~~~~l~~L~~L~l~~N~-l~~l~~~~~- 183 (394)
T COG4886 115 LTNLTSLDLDNNNITDI-----PPLI-GLLKSNLKELDLSD-NKIESLP--SPLRNLPNLKNLDLSFND-LSDLPKLLS- 183 (394)
T ss_pred ccceeEEecCCcccccC-----cccc-ccchhhcccccccc-cchhhhh--hhhhccccccccccCCch-hhhhhhhhh-
Confidence 46788888888877777 5443 2343 888888886 4566543 125788889999988888 777765221
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCC
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQ 349 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 349 (595)
..+.|+.|++++ ..+..++.... ....|+++.+.+.+.
T Consensus 184 --------~~~~L~~L~ls~-N~i~~l~~~~~--~~~~L~~l~~~~N~~ 221 (394)
T COG4886 184 --------NLSNLNNLDLSG-NKISDLPPEIE--LLSALEELDLSNNSI 221 (394)
T ss_pred --------hhhhhhheeccC-CccccCchhhh--hhhhhhhhhhcCCcc
Confidence 267888888888 44666554311 134477777777653
No 48
>PLN03150 hypothetical protein; Provisional
Probab=97.14 E-value=0.00087 Score=73.68 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=53.2
Q ss_pred CCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhh
Q 036689 49 QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK 128 (595)
Q Consensus 49 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~ 128 (595)
.+..|+|.++ ++....+. .+..+++|+.|+|+++ .+... .+..++.+++|+.|++++| .+....+ ..++
T Consensus 419 ~v~~L~L~~n-~L~g~ip~-----~i~~L~~L~~L~Ls~N-~l~g~--iP~~~~~l~~L~~LdLs~N-~lsg~iP-~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPN-----DISKLRHLQSINLSGN-SIRGN--IPPSLGSITSLEVLDLSYN-SFNGSIP-ESLG 487 (623)
T ss_pred EEEEEECCCC-CccccCCH-----HHhCCCCCCEEECCCC-cccCc--CChHHhCCCCCCEEECCCC-CCCCCCc-hHHh
Confidence 3666777766 45433232 3456677777777775 44422 1223667777777777774 4554333 5667
Q ss_pred cCCCCcEEEEcccCCcceee
Q 036689 129 CLPRLERIAVINCRNIQEIF 148 (595)
Q Consensus 129 ~l~~L~~L~l~~c~~l~~~~ 148 (595)
++++|++|++++|.....+|
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred cCCCCCEEECcCCcccccCC
Confidence 77777777777765544554
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.12 E-value=3.5e-05 Score=78.89 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=118.2
Q ss_pred cccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccc
Q 036689 15 SKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERI 94 (595)
Q Consensus 15 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 94 (595)
|..+..|..|+.|.|+.|.. ..++..+ ..+..|.+|+|+.+ ++..+++. -++-=|+.|.++++ +++.+
T Consensus 91 p~~~~~f~~Le~liLy~n~~-r~ip~~i--~~L~~lt~l~ls~N-qlS~lp~~-------lC~lpLkvli~sNN-kl~~l 158 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCI-RTIPEAI--CNLEALTFLDLSSN-QLSHLPDG-------LCDLPLKVLIVSNN-KLTSL 158 (722)
T ss_pred chHHHHHHHHHHHHHHhccc-eecchhh--hhhhHHHHhhhccc-hhhcCChh-------hhcCcceeEEEecC-ccccC
Confidence 54455778888888887776 4555555 78888888999887 67766432 23344888888884 77766
Q ss_pred ccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCC
Q 036689 95 CQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGS 174 (595)
Q Consensus 95 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (595)
+..++..+.|..|+.+.| .+..++ +.++.+.+|+.|.++. +.+..+|...+ .-.|..|+++
T Consensus 159 ---p~~ig~~~tl~~ld~s~n-ei~slp--sql~~l~slr~l~vrR-n~l~~lp~El~-----------~LpLi~lDfS- 219 (722)
T KOG0532|consen 159 ---PEEIGLLPTLAHLDVSKN-EIQSLP--SQLGYLTSLRDLNVRR-NHLEDLPEELC-----------SLPLIRLDFS- 219 (722)
T ss_pred ---CcccccchhHHHhhhhhh-hhhhch--HHhhhHHHHHHHHHhh-hhhhhCCHHHh-----------CCceeeeecc-
Confidence 455788888999999885 556566 6778888899998888 45555553321 2335566654
Q ss_pred CCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCcccc--ccCC
Q 036689 175 LPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMF--LCFQ 252 (595)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~l~ 252 (595)
|.++..++.. | ..|+.|++|.|.+|.++.= |..++ +...
T Consensus 220 cNkis~iPv~-------------------------------f---r~m~~Lq~l~LenNPLqSP-----PAqIC~kGkVH 260 (722)
T KOG0532|consen 220 CNKISYLPVD-------------------------------F---RKMRHLQVLQLENNPLQSP-----PAQICEKGKVH 260 (722)
T ss_pred cCceeecchh-------------------------------h---hhhhhheeeeeccCCCCCC-----hHHHHhcccee
Confidence 5556555542 2 2588999999999977643 44431 1122
Q ss_pred CccEEEEecC
Q 036689 253 NLTRLILRKC 262 (595)
Q Consensus 253 ~L~~L~L~~c 262 (595)
=.++|++.-|
T Consensus 261 IFKyL~~qA~ 270 (722)
T KOG0532|consen 261 IFKYLSTQAC 270 (722)
T ss_pred eeeeecchhc
Confidence 2455666666
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.10 E-value=0.00016 Score=79.44 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=17.9
Q ss_pred cCCCccEEEEecCCCCccccchhhhhccCCCcEEEeec
Q 036689 250 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRY 287 (595)
Q Consensus 250 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 287 (595)
.+|+|+.||.++. .+....-...+..-|+|+.+.+.+
T Consensus 248 ~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 248 VLPELRFLDCSGT-DINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred cCccccEEecCCc-chhHHHHHHHHHhCccHhhhhhhh
Confidence 3566666666653 333322223344445555554443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.81 E-value=6.7e-05 Score=78.99 Aligned_cols=36 Identities=14% Similarity=0.420 Sum_probs=20.3
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN 140 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 140 (595)
..-++.|+.|+|+. ++++.+ ..+..|+.|++|||+.
T Consensus 183 Lqll~ale~LnLsh-Nk~~~v---~~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 183 LQLLPALESLNLSH-NKFTKV---DNLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHHHHhhhhccch-hhhhhh---HHHHhccccccccccc
Confidence 34455666666666 455544 4555566666666655
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.62 E-value=8.4e-05 Score=71.81 Aligned_cols=124 Identities=18% Similarity=0.079 Sum_probs=80.5
Q ss_pred ccccccccccEEEeccCCCCccccccc--cccccCCCcEEEcccCCCceEecCCCC---------CCCcCCcCCCccEEe
Q 036689 16 KKLQGIKDVEYLCLDKSQDVKNVLFDL--DREGFLQLKHLHVQNNPDFMCIVDSKE---------RVPLDDAFPILESLN 84 (595)
Q Consensus 16 ~~~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~i~~~~~---------~~~~~~~~~~L~~L~ 84 (595)
+++...++|++|+|++|..-..-++.+ ....+..|++|.|.|| ++.-.... . ...-..+-++|++++
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~-~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGG-RLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHH-HHHHHHHHHHHHhccCCCcceEEEE
Confidence 344456699999999998754443333 2367999999999999 66533111 1 001233457899999
Q ss_pred ccCccCccccccc--cccccCCCCccEEEecCCCCcccc---cchhhhhcCCCCcEEEEcccCC
Q 036689 85 LYNLIKLERICQD--RLSVQSFNELKTIRVELCDQLSNI---FLLSAAKCLPRLERIAVINCRN 143 (595)
Q Consensus 85 l~~~~~l~~~~~~--~~~~~~l~~L~~L~L~~c~~l~~~---~~~~~~~~l~~L~~L~l~~c~~ 143 (595)
..++ .++.-... ...+...+.|+.+.+... .+..- .....+..|++|++|+++++..
T Consensus 164 ~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 164 CGRN-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred eecc-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchh
Confidence 9985 55542110 111456689999999984 44321 1225677899999999999554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0027 Score=57.02 Aligned_cols=110 Identities=21% Similarity=0.191 Sum_probs=81.2
Q ss_pred cc-ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccc
Q 036689 18 LQ-GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ 96 (595)
Q Consensus 18 ~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 96 (595)
++ ..+....++|.++..... ..+ ..+++|.+|.|.+| .|+.|.+. ....+|+|.+|.+.++ ++.++.
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l--~~l--p~l~rL~tLll~nN-rIt~I~p~-----L~~~~p~l~~L~LtnN-si~~l~- 104 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKL--DNL--PHLPRLHTLLLNNN-RITRIDPD-----LDTFLPNLKTLILTNN-SIQELG- 104 (233)
T ss_pred ccccccccceecccccchhhc--ccC--CCccccceEEecCC-cceeeccc-----hhhhccccceEEecCc-chhhhh-
Confidence 55 677888999998877443 233 67999999999888 89988554 4567899999999995 666652
Q ss_pred ccccccCCCCccEEEecCCCCccccc--chhhhhcCCCCcEEEEcc
Q 036689 97 DRLSVQSFNELKTIRVELCDQLSNIF--LLSAAKCLPRLERIAVIN 140 (595)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~c~~l~~~~--~~~~~~~l~~L~~L~l~~ 140 (595)
+..+...||.|++|.+-+. .++... -..++..+|+|+.||+.+
T Consensus 105 dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hcchhccCCccceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 2334678999999999884 333321 014566899999999876
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.54 E-value=0.0044 Score=55.66 Aligned_cols=112 Identities=20% Similarity=0.203 Sum_probs=74.4
Q ss_pred cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689 47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA 126 (595)
Q Consensus 47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~ 126 (595)
.-+...++|+++ ++..+. .+..++.|.+|.+.++ ++..+..+- ...+|+|+.|.+.+ +.+..+.....
T Consensus 41 ~d~~d~iDLtdN-dl~~l~-------~lp~l~rL~tLll~nN-rIt~I~p~L--~~~~p~l~~L~Ltn-Nsi~~l~dl~p 108 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLD-------NLPHLPRLHTLLLNNN-RITRIDPDL--DTFLPNLKTLILTN-NSIQELGDLDP 108 (233)
T ss_pred ccccceeccccc-chhhcc-------cCCCccccceEEecCC-cceeeccch--hhhccccceEEecC-cchhhhhhcch
Confidence 446667888887 555442 4567888999999984 777774331 34568899999998 56666554466
Q ss_pred hhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689 127 AKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE 177 (595)
Q Consensus 127 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (595)
+..|+.|++|.+-+++--.. . .+..+ -+.++++|+.|+..+-..
T Consensus 109 La~~p~L~~Ltll~Npv~~k-~-~YR~y-----vl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHK-K-NYRLY-----VLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hccCCccceeeecCCchhcc-c-CceeE-----EEEecCcceEeehhhhhH
Confidence 67899999998887443221 0 00000 245688999998877553
No 55
>PLN03150 hypothetical protein; Provisional
Probab=96.53 E-value=0.0036 Score=68.90 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=82.1
Q ss_pred cccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccccc
Q 036689 23 DVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQ 102 (595)
Q Consensus 23 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 102 (595)
.++.|+|.++.....++..+ +.+++|+.|+|++| .+....+. .+..+++|+.|+++++ ++... .+..++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i--~~L~~L~~L~Ls~N-~l~g~iP~-----~~~~l~~L~~LdLs~N-~lsg~--iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI--SKLRHLQSINLSGN-SIRGNIPP-----SLGSITSLEVLDLSYN-SFNGS--IPESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHH--hCCCCCCEEECCCC-cccCcCCh-----HHhCCCCCCEEECCCC-CCCCC--CchHHh
Confidence 47889999988766666665 89999999999998 56533233 4678899999999996 66543 244478
Q ss_pred CCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCccee
Q 036689 103 SFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEI 147 (595)
Q Consensus 103 ~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 147 (595)
.+++|+.|++++| .+....|........++..+++.++..+...
T Consensus 488 ~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 488 QLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cCCCCCEEECcCC-cccccCChHHhhccccCceEEecCCccccCC
Confidence 9999999999996 5554444233333457788999887665543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.53 E-value=0.0053 Score=41.18 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=19.9
Q ss_pred CCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689 105 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC 141 (595)
Q Consensus 105 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 141 (595)
++|++|++++ +.+++++ +.++++++|++|++++|
T Consensus 1 ~~L~~L~l~~-N~i~~l~--~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLP--PELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETS-SS-SSHG--GHGTTCTTSSEEEETSS
T ss_pred CcceEEEccC-CCCcccC--chHhCCCCCCEEEecCC
Confidence 3566777776 3566554 33566777777777764
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.42 E-value=0.00058 Score=71.47 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=47.8
Q ss_pred ccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchh
Q 036689 46 GFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLS 125 (595)
Q Consensus 46 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~ 125 (595)
.+..++.+.+..+ .+..+.. ....+.+|+.|++.+. +++.+... +..+++|++|++++ +.++.+ .
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~------~l~~~~~l~~l~l~~n-~i~~i~~~---l~~~~~L~~L~ls~-N~I~~i---~ 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILN------HLSKLKSLEALDLYDN-KIEKIENL---LSSLVNLQVLDLSF-NKITKL---E 134 (414)
T ss_pred HhHhHHhhccchh-hhhhhhc------ccccccceeeeecccc-chhhcccc---hhhhhcchheeccc-cccccc---c
Confidence 4556666665554 3443211 2456677777777774 66665221 45677777777777 566665 4
Q ss_pred hhhcCCCCcEEEEcc
Q 036689 126 AAKCLPRLERIAVIN 140 (595)
Q Consensus 126 ~~~~l~~L~~L~l~~ 140 (595)
.+..++.|+.|++.+
T Consensus 135 ~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSG 149 (414)
T ss_pred chhhccchhhheecc
Confidence 445566677777776
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.29 E-value=0.00014 Score=76.75 Aligned_cols=112 Identities=21% Similarity=0.179 Sum_probs=84.8
Q ss_pred cccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccc
Q 036689 15 SKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERI 94 (595)
Q Consensus 15 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 94 (595)
.++++.++.+|.|+|++|+..+-- .+ ..|+.|++|+|+.| .++.++.- ...++ +|..|.|+++ .++.+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~--~L--r~l~~LkhLDlsyN-~L~~vp~l-----~~~gc-~L~~L~lrnN-~l~tL 247 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD--NL--RRLPKLKHLDLSYN-CLRHVPQL-----SMVGC-KLQLLNLRNN-ALTTL 247 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH--HH--Hhcccccccccccc-hhcccccc-----chhhh-hheeeeeccc-HHHhh
Confidence 667788999999999999885322 33 78999999999988 67776422 12233 3999999995 67765
Q ss_pred ccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCC
Q 036689 95 CQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN 143 (595)
Q Consensus 95 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 143 (595)
.+ +.++.+|+.||+++ +.+.+......+..+..|++|.+.|++.
T Consensus 248 -~g---ie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 248 -RG---IENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hh---HHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 23 78899999999999 5676655445666788899999988653
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.13 E-value=0.0065 Score=40.77 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=24.2
Q ss_pred ccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEe
Q 036689 22 KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCI 64 (595)
Q Consensus 22 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i 64 (595)
++|++|+++++.. +++++.+ +.+++|++|++++| .++.+
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l--~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPEL--SNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHG--TTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCC-cccCchH--hCCCCCCEEEecCC-CCCCC
Confidence 4677777777766 3554445 67777777777777 45533
No 60
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0015 Score=58.59 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=41.6
Q ss_pred cccccceeccccccccccccCcccccCCCccEEEEeCCCCccccC-CCCCCCCCcceEEec
Q 036689 502 FNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFT-TGELSTPPRVDVMYR 561 (595)
Q Consensus 502 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp-~~~~~~~~L~~l~i~ 561 (595)
+++++.|.+.+|.++.+.+.+....-.|+|+.|++++|+++++.. ..+..+++|+.+.+.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 667777777777777766655444457788888888888887653 334557777777776
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0037 Score=58.87 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=71.0
Q ss_pred cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCc
Q 036689 444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGN 523 (595)
Q Consensus 444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 523 (595)
+.+.++|+.+|| +++++ ++...++.|++|.++-+. ++++..- ..+++|+.|.|.. +.+.++.+-.
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNk-IssL~pl---------~rCtrLkElYLRk-N~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNK-ISSLAPL---------QRCTRLKELYLRK-NCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeeccc-cccchhH---------HHHHHHHHHHHHh-cccccHHHHH
Confidence 567888999997 57777 677889999999998765 5555321 1478999999988 4777777666
Q ss_pred ccccCCCccEEEEeCCCCccccCC-----CCCCCCCcceEE
Q 036689 524 YIFKFPSLEVLFVVGCPKMNIFTT-----GELSTPPRVDVM 559 (595)
Q Consensus 524 ~~~~~~~L~~L~l~~C~~l~~lp~-----~~~~~~~L~~l~ 559 (595)
+...+|+|+.|-+...|=-..-+. -+.-+|+||+|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666789999998887553321111 112378888877
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.84 E-value=0.019 Score=53.81 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=38.3
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
..+.+|+.|.+.++ +++.+. .+-.+|+|++|.++++ ......-......++|+|+++++++ ++++.+...
T Consensus 40 d~~~~le~ls~~n~-gltt~~-------~~P~Lp~LkkL~lsdn-~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl 109 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTLT-------NFPKLPKLKKLELSDN-YRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTL 109 (260)
T ss_pred ccccchhhhhhhcc-ceeecc-------cCCCcchhhhhcccCC-cccccccceehhhhCCceeEEeecC-Ccccccccc
Confidence 34445555555554 333321 2334455555555553 1111100011123446666666665 344433222
Q ss_pred hhhhcCCCCcEEEEcccCC
Q 036689 125 SAAKCLPRLERIAVINCRN 143 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~c~~ 143 (595)
..+..+.+|..|++..|..
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcchhhhhcccCCc
Confidence 3344455555555555443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.0016 Score=61.18 Aligned_cols=103 Identities=21% Similarity=0.162 Sum_probs=70.1
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
+.+.+.|+..+|.++++. - +..++.|+.|.|+- ++++.+.+ +..|+.|++|.++.+. |.++.......
T Consensus 18 l~~vkKLNcwg~~L~DIs-----i--c~kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~-I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-----I--CEKMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNC-IESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHHH-----H--HHhcccceeEEeec-cccccchh---HHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence 456778888888877762 1 14688999999984 57766654 4889999999998876 77664433322
Q ss_pred CCCCCCcCCCcccEEeecCCCCcccccCCC---ccccCcccceee
Q 036689 302 DQVPPNFVFPQVTILRLVGLPELKCLYPGM---HTSEWPALKLLD 343 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~---~~~~~~~L~~L~ 343 (595)
.+|+|+.|+|..+|.-..-+... ....+|+|+.|+
T Consensus 86 -------nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 -------NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -------cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 38999999999877654432221 122378888775
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.51 E-value=0.0092 Score=62.49 Aligned_cols=105 Identities=24% Similarity=0.243 Sum_probs=67.3
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+.+|+.|++.++.+..+ ...+ .++++|++|++++ +.++.+.+ +..++.|+.|++.++. +..+....
T Consensus 93 ~~~~l~~l~l~~n~i~~i-----~~~l-~~~~~L~~L~ls~-N~I~~i~~---l~~l~~L~~L~l~~N~-i~~~~~~~-- 159 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKI-----ENLL-SSLVNLQVLDLSF-NKITKLEG---LSTLTLLKELNLSGNL-ISDISGLE-- 159 (414)
T ss_pred cccceeeeeccccchhhc-----ccch-hhhhcchheeccc-cccccccc---hhhccchhhheeccCc-chhccCCc--
Confidence 467888888888877766 2211 3578888888886 46665544 3667778888888887 76664311
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCC
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACD 348 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 348 (595)
.+++|+.+++.++. +..+.... ...+.+++.+.+.+..
T Consensus 160 --------~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 160 --------SLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred --------cchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 16778888887743 33333310 1226777777776653
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.0048 Score=55.46 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=36.5
Q ss_pred hhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCC
Q 036689 274 LGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQ 349 (595)
Q Consensus 274 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 349 (595)
+..++.++.|.+.+|..+.+.......+ ..++|+.|++++|+++++.... ....+++|+.|.+.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-------~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG-------LAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc-------cccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchh
Confidence 3455556666666666554433321111 1667777777777776654322 122366677776666554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.18 E-value=0.026 Score=52.99 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=76.2
Q ss_pred ccccc-ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccc
Q 036689 15 SKKLQ-GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLER 93 (595)
Q Consensus 15 ~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 93 (595)
..|+. .+.+|+.|.+.++...+.. .+ ..+|+||.|.++.+. ....+ .........|+|++|+++++ ++..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~--~~--P~Lp~LkkL~lsdn~-~~~~~---~l~vl~e~~P~l~~l~ls~N-ki~~ 105 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT--NF--PKLPKLKKLELSDNY-RRVSG---GLEVLAEKAPNLKVLNLSGN-KIKD 105 (260)
T ss_pred cccccccccchhhhhhhccceeecc--cC--CCcchhhhhcccCCc-ccccc---cceehhhhCCceeEEeecCC-cccc
Confidence 45555 6788888888877764332 23 578999999998872 11110 11113345599999999995 5554
Q ss_pred cccccccccCCCCccEEEecCCCCccc-ccchhhhhcCCCCcEEEEcccC
Q 036689 94 ICQDRLSVQSFNELKTIRVELCDQLSN-IFLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~L~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~ 142 (595)
+.. ..+...+++|..|++.+|+...- ..-...+.-+++|++|+-..+.
T Consensus 106 lst-l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 106 LST-LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred ccc-cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 321 22356788999999999953321 1122566778999999866543
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.79 E-value=0.19 Score=27.88 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=12.6
Q ss_pred CccEEEEeCCCCccccCCCCC
Q 036689 530 SLEVLFVVGCPKMNIFTTGEL 550 (595)
Q Consensus 530 ~L~~L~l~~C~~l~~lp~~~~ 550 (595)
+|++|++++| +++.+|.++.
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 3667777776 6666666543
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.78 E-value=0.22 Score=25.69 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=7.8
Q ss_pred CCccEEEEeCCCCccccC
Q 036689 529 PSLEVLFVVGCPKMNIFT 546 (595)
Q Consensus 529 ~~L~~L~l~~C~~l~~lp 546 (595)
++|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356666666664 55544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.49 E-value=2.4 Score=35.75 Aligned_cols=103 Identities=9% Similarity=0.116 Sum_probs=34.5
Q ss_pred ccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccc
Q 036689 441 SVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFC 520 (595)
Q Consensus 441 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 520 (595)
+..+++|+.+.+.. .++.+ ....+.++++|+.+.+.+. ++.+...... ..++|+.+.+.+ .+..+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I-~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~-------~~~~l~~i~~~~--~~~~i~ 73 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKI-GENAFSNCTSLKSINFPNN--LTSIGDNAFS-------NCKSLESITFPN--NLKSIG 73 (129)
T ss_dssp TTT-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESST--TSCE-TTTTT-------T-TT-EEEEETS--TT-EE-
T ss_pred HhCCCCCCEEEECC--CeeEe-Chhhccccccccccccccc--ccccceeeee-------cccccccccccc--cccccc
Confidence 33344555555542 23333 2223344455555555431 3343322222 233455555543 333343
Q ss_pred cCcccccCCCccEEEEeCCCCccccCCC-CCCCCCcceEEec
Q 036689 521 SGNYIFKFPSLEVLFVVGCPKMNIFTTG-ELSTPPRVDVMYR 561 (595)
Q Consensus 521 ~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~i~ 561 (595)
...+. .++.|+.+.+.. ++..++.. ..++ .|+++.+.
T Consensus 74 ~~~F~-~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 74 DNAFS-NCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTTT-T-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccc-ccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 33211 255555555532 34444332 2233 55555543
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=85.01 E-value=0.049 Score=46.00 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=60.6
Q ss_pred cccEEEeccCCCC--ccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 23 DVEYLCLDKSQDV--KNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 23 ~L~~L~L~~~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
.+-.++|++|... -+.+... .+-.+|+..+|++| +++.+++. +...||-++.|++.++ .+.+++.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l--~~~~el~~i~ls~N-~fk~fp~k-----ft~kf~t~t~lNl~~n-eisdvPeE--- 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYML--SKGYELTKISLSDN-GFKKFPKK-----FTIKFPTATTLNLANN-EISDVPEE--- 95 (177)
T ss_pred HhhhcccccchhhHHHHHHHHH--hCCceEEEEecccc-hhhhCCHH-----Hhhccchhhhhhcchh-hhhhchHH---
Confidence 3445555555442 1122222 45556777777777 66655433 4456677788888774 66666333
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN 140 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 140 (595)
+..++.||.|+++. +.+...| ..+..+.++-.|+..+
T Consensus 96 ~Aam~aLr~lNl~~-N~l~~~p--~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 96 LAAMPALRSLNLRF-NPLNAEP--RVIAPLIKLDMLDSPE 132 (177)
T ss_pred HhhhHHhhhccccc-Cccccch--HHHHHHHhHHHhcCCC
Confidence 66778888888887 3444444 4444566666666555
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.91 E-value=4.6 Score=33.97 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=30.5
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
.++++|+.+.+.+ .++.+... .+..+++|+.+++.+ .+..+.. ..+..+++|+.+.+.+ .+..+..
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~-----~F~~~~~l~~i~~~~--~~~~i~~--~~F~~~~~l~~i~~~~--~~~~i~~- 74 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGEN-----AFSNCTSLKSINFPN--NLTSIGD--NAFSNCKSLESITFPN--NLKSIGD- 74 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TT-----TTTT-TT-SEEEESS--TTSCE-T--TTTTT-TT-EEEEETS--TT-EE-T-
T ss_pred hCCCCCCEEEECC--CeeEeChh-----hcccccccccccccc--cccccce--eeeecccccccccccc--ccccccc-
Confidence 4455555555542 34444322 344455555555554 2333321 1234444555555543 2222222
Q ss_pred hhhhcCCCCcEEEEc
Q 036689 125 SAAKCLPRLERIAVI 139 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~ 139 (595)
..+..+++|+.+.+.
T Consensus 75 ~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTTT-TTECEEEET
T ss_pred ccccccccccccccC
Confidence 344455555555554
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.95 E-value=0.66 Score=26.89 Aligned_cols=18 Identities=11% Similarity=0.407 Sum_probs=13.1
Q ss_pred CCCccEEEecCCCCcccc
Q 036689 104 FNELKTIRVELCDQLSNI 121 (595)
Q Consensus 104 l~~L~~L~L~~c~~l~~~ 121 (595)
+++|++|+|++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467788888888777753
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.83 E-value=0.58 Score=27.12 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=13.2
Q ss_pred CCCccEEEEeCCCCccc
Q 036689 528 FPSLEVLFVVGCPKMNI 544 (595)
Q Consensus 528 ~~~L~~L~l~~C~~l~~ 544 (595)
||+|+.|++.+|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57788888888887764
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=81.26 E-value=0.22 Score=42.19 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=43.7
Q ss_pred cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCc
Q 036689 444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGN 523 (595)
Q Consensus 444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 523 (595)
...|+..++++ +.+++. +..+...++..+.|++.++. +.++|..... .|.|+.|+++.. .+...+...
T Consensus 52 ~~el~~i~ls~-N~fk~f-p~kft~kf~t~t~lNl~~ne-isdvPeE~Aa--------m~aLr~lNl~~N-~l~~~p~vi 119 (177)
T KOG4579|consen 52 GYELTKISLSD-NGFKKF-PKKFTIKFPTATTLNLANNE-ISDVPEELAA--------MPALRSLNLRFN-PLNAEPRVI 119 (177)
T ss_pred CceEEEEeccc-chhhhC-CHHHhhccchhhhhhcchhh-hhhchHHHhh--------hHHhhhcccccC-ccccchHHH
Confidence 34566777777 667765 44555666777777777765 7777765443 777888877774 454455433
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=67.81 E-value=1.9 Score=41.09 Aligned_cols=184 Identities=16% Similarity=0.077 Sum_probs=89.1
Q ss_pred ccCCCCccEEEecCCCCccc-ccc--hhhhhcCCCCcEEEEcccCCcceee-cccCccc---ccccccccccccceEecC
Q 036689 101 VQSFNELKTIRVELCDQLSN-IFL--LSAAKCLPRLERIAVINCRNIQEIF-VVDGEYD---AIDHQKIEFGQLSTLCLG 173 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~-~~~--~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~---~~~~~~~~~~~L~~L~l~ 173 (595)
.-+||+|+..++++. -+.. .|+ ...+++-+.|++|.+++|.. ..+. ...+... +....+..-|.|+.+...
T Consensus 88 Llkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 88 LLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 457899999999984 3332 221 24567788899999988653 3321 1111000 011122334555555332
Q ss_pred CCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCC-CccccccCC
Q 036689 174 SLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQL-PVAMFLCFQ 252 (595)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~~~~~~l~ 252 (595)
. .++.+.+... +...++ .-.+|+++.+..|.+..-+...+ -.+. ..++
T Consensus 166 r-NRlengs~~~--------------------------~a~~l~---sh~~lk~vki~qNgIrpegv~~L~~~gl-~y~~ 214 (388)
T COG5238 166 R-NRLENGSKEL--------------------------SAALLE---SHENLKEVKIQQNGIRPEGVTMLAFLGL-FYSH 214 (388)
T ss_pred c-chhccCcHHH--------------------------HHHHHH---hhcCceeEEeeecCcCcchhHHHHHHHH-HHhC
Confidence 2 2222222111 000111 12467788887775542211100 0011 4678
Q ss_pred CccEEEEecCCCCccccc---hhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCC
Q 036689 253 NLTRLILRKCPKLKYIFS---ASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGL 321 (595)
Q Consensus 253 ~L~~L~L~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 321 (595)
+|+.|++.+. .++..-+ ...+...+.|++|.+..|- +..-........ .+....|+|..|.+.+.
T Consensus 215 ~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~--f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 215 SLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRR--FNEKFVPNLMPLPGDYN 282 (388)
T ss_pred cceeeecccc-chhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHH--hhhhcCCCccccccchh
Confidence 8999999874 3333211 1123445678999999986 433222111100 11223677777766653
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=62.81 E-value=4.8 Score=23.06 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=10.6
Q ss_pred Cccceeecccccceee
Q 036689 223 SNLEVLEMNKVNIEKI 238 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~ 238 (595)
++|+.|++++|+++.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4567777777766665
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=62.81 E-value=4.8 Score=23.06 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=10.6
Q ss_pred Cccceeecccccceee
Q 036689 223 SNLEVLEMNKVNIEKI 238 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~ 238 (595)
++|+.|++++|+++.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4567777777766665
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=37.79 E-value=22 Score=19.74 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=8.1
Q ss_pred CCCcceEeccCCC
Q 036689 384 FPNLEELGLDGKD 396 (595)
Q Consensus 384 l~~L~~L~l~~~~ 396 (595)
+++|++|++++|+
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3678888888886
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=32.26 E-value=37 Score=19.73 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=11.8
Q ss_pred Cccceeecccccceee
Q 036689 223 SNLEVLEMNKVNIEKI 238 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~ 238 (595)
++|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4678888888877655
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=26.27 E-value=42 Score=19.55 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=11.0
Q ss_pred CCccEEEecCCCCccccc
Q 036689 105 NELKTIRVELCDQLSNIF 122 (595)
Q Consensus 105 ~~L~~L~L~~c~~l~~~~ 122 (595)
++|++|++++ +.++.+|
T Consensus 2 ~~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSN-NQLTSLP 18 (26)
T ss_pred cccceeecCC-CccccCc
Confidence 3567777777 5666665
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.37 E-value=38 Score=35.97 Aligned_cols=84 Identities=19% Similarity=0.145 Sum_probs=0.0
Q ss_pred cCCCccEEEEecCCCCccccchh-hhhccCCCcEEEeecc--cccceecccccCCCCCCCCcCCCcccEEeecCCCCccc
Q 036689 250 CFQNLTRLILRKCPKLKYIFSAS-MLGSFEHLQHLEIRYC--KGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKC 326 (595)
Q Consensus 250 ~l~~L~~L~L~~c~~l~~l~~~~-~~~~l~~L~~L~l~~c--~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 326 (595)
+++.+..+.|++ +.+.++...+ .....|+|+.|+|+++ . +.........+ ...|++|.+.|+|--+.
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~-~~~~~el~K~k--------~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSK-ISSESELDKLK--------GLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhh-hcchhhhhhhc--------CCCHHHeeecCCccccc
Q ss_pred ccCCC-----ccccCcccceee
Q 036689 327 LYPGM-----HTSEWPALKLLD 343 (595)
Q Consensus 327 ~~~~~-----~~~~~~~L~~L~ 343 (595)
+.... ....||+|..|+
T Consensus 286 f~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhhHHHHHHHHHhcchheeec
Done!