Query 036689
Match_columns 595
No_of_seqs 206 out of 2481
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 1.6E-29 5.6E-34 277.3 34.3 488 2-572 36-565 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-28 4E-33 270.5 33.5 482 2-571 35-562 (606)
3 3rgz_A Protein brassinosteroid 100.0 2.5E-29 8.4E-34 282.7 26.8 464 3-563 81-548 (768)
4 3t6q_A CD180 antigen; protein- 100.0 7.4E-28 2.5E-32 264.2 35.3 473 21-565 32-535 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-27 5.5E-32 265.1 36.3 468 2-565 28-548 (680)
6 3rgz_A Protein brassinosteroid 100.0 2E-28 6.8E-33 275.3 28.7 271 222-548 393-723 (768)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-27 8.4E-32 260.1 33.6 439 21-565 31-533 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 4.5E-27 1.6E-31 267.0 35.5 476 2-571 27-564 (844)
9 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-26 7.1E-31 256.1 37.8 128 2-142 52-182 (680)
10 2z63_A TOLL-like receptor 4, v 100.0 8.4E-27 2.9E-31 253.8 33.5 462 2-564 31-529 (570)
11 2z63_A TOLL-like receptor 4, v 100.0 1.8E-26 6.3E-31 251.2 28.7 444 20-565 26-506 (570)
12 4eco_A Uncharacterized protein 99.9 2.2E-26 7.4E-31 252.9 24.9 437 16-565 73-599 (636)
13 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-26 5.1E-31 250.7 23.0 455 21-569 25-512 (549)
14 4ecn_A Leucine-rich repeat pro 99.9 1.5E-25 5.1E-30 250.8 27.2 434 16-565 315-839 (876)
15 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-26 7.4E-31 249.4 19.0 425 36-565 18-485 (549)
16 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-25 4.6E-30 241.5 24.6 462 2-573 3-487 (520)
17 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-24 8.4E-29 244.5 33.4 472 2-544 51-562 (844)
18 4g8a_A TOLL-like receptor 4; l 99.9 7.8E-24 2.7E-28 233.3 35.0 497 2-574 55-587 (635)
19 4eco_A Uncharacterized protein 99.9 5.6E-25 1.9E-29 241.7 23.9 365 60-542 194-600 (636)
20 4ecn_A Leucine-rich repeat pro 99.9 3.6E-25 1.2E-29 247.8 22.1 366 60-542 436-840 (876)
21 2z7x_B TOLL-like receptor 1, v 99.9 6.3E-25 2.2E-29 236.3 20.7 430 2-541 24-480 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.1E-23 7.1E-28 226.5 28.7 467 2-573 34-516 (562)
23 1o6v_A Internalin A; bacterial 99.9 1.1E-22 3.8E-27 215.4 27.6 238 221-546 154-391 (466)
24 1o6v_A Internalin A; bacterial 99.9 1.9E-22 6.6E-27 213.6 28.4 349 20-521 44-392 (466)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-22 3.8E-27 220.7 22.6 428 2-541 55-509 (562)
26 3v47_A TOLL-like receptor 5B a 99.9 2.5E-22 8.4E-27 212.3 24.6 85 48-142 30-114 (455)
27 1jl5_A Outer protein YOPM; leu 99.9 1.3E-22 4.4E-27 213.3 21.4 91 385-513 277-367 (454)
28 3v47_A TOLL-like receptor 5B a 99.9 2.5E-22 8.5E-27 212.2 23.3 217 20-290 28-251 (455)
29 3o6n_A APL1; leucine-rich repe 99.9 4.1E-22 1.4E-26 206.0 23.3 86 45-141 42-127 (390)
30 1jl5_A Outer protein YOPM; leu 99.9 2E-22 6.9E-27 211.8 21.2 58 222-293 152-209 (454)
31 2id5_A Lingo-1, leucine rich r 99.9 3.5E-21 1.2E-25 204.6 29.9 301 47-482 31-331 (477)
32 4g8a_A TOLL-like receptor 4; l 99.9 6.7E-21 2.3E-25 209.8 32.3 443 22-565 52-554 (635)
33 4fmz_A Internalin; leucine ric 99.9 1.6E-21 5.4E-26 198.3 22.8 304 45-514 41-344 (347)
34 3o6n_A APL1; leucine-rich repe 99.9 4.1E-21 1.4E-25 198.5 24.3 236 221-564 115-350 (390)
35 3oja_B Anopheles plasmodium-re 99.9 1.7E-21 5.9E-26 212.6 22.0 309 45-514 48-356 (597)
36 3bz5_A Internalin-J, INLJ; leu 99.9 2.7E-21 9.2E-26 203.4 22.4 307 17-486 37-353 (457)
37 3bz5_A Internalin-J, INLJ; leu 99.9 1E-20 3.5E-25 199.0 23.6 310 2-461 45-354 (457)
38 4fmz_A Internalin; leucine ric 99.9 1.8E-20 6.1E-25 190.6 24.0 170 74-347 40-209 (347)
39 3oja_B Anopheles plasmodium-re 99.9 2.3E-20 8E-25 203.7 24.5 236 221-540 121-356 (597)
40 2id5_A Lingo-1, leucine rich r 99.9 2.6E-20 8.8E-25 198.0 23.3 301 77-514 31-331 (477)
41 3ogk_B Coronatine-insensitive 99.8 1.3E-22 4.3E-27 221.9 -0.4 441 20-563 71-548 (592)
42 3ogk_B Coronatine-insensitive 99.8 5E-22 1.7E-26 217.1 3.6 415 20-539 110-548 (592)
43 2p1m_B Transport inhibitor res 99.8 1.2E-21 4.2E-26 214.1 1.1 147 20-180 64-226 (594)
44 2p1m_B Transport inhibitor res 99.8 2.6E-21 8.9E-26 211.6 0.9 188 24-262 45-245 (594)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-17 3.7E-22 168.8 22.9 58 78-140 54-111 (332)
46 2ft3_A Biglycan; proteoglycan, 99.8 7E-18 2.4E-22 170.2 21.5 247 221-564 76-331 (332)
47 1xku_A Decorin; proteoglycan, 99.8 3.6E-17 1.2E-21 164.9 24.8 78 49-140 32-109 (330)
48 1xku_A Decorin; proteoglycan, 99.8 5.8E-17 2E-21 163.3 26.0 273 21-396 51-330 (330)
49 4fcg_A Uncharacterized protein 99.8 1.8E-17 6.2E-22 166.6 19.6 234 46-396 79-312 (328)
50 1z7x_W Ribonuclease inhibitor; 99.7 6.1E-20 2.1E-24 194.1 -2.8 116 21-142 2-124 (461)
51 4fcg_A Uncharacterized protein 99.7 3.3E-17 1.1E-21 164.7 16.8 109 440-561 201-309 (328)
52 3zyj_A Leucine-rich repeat-con 99.7 1.8E-16 6.3E-21 166.3 21.1 247 24-349 45-291 (440)
53 3zyi_A Leucine-rich repeat-con 99.7 2.5E-16 8.5E-21 165.9 21.3 228 47-348 74-301 (452)
54 3zyi_A Leucine-rich repeat-con 99.7 1.2E-16 4.2E-21 168.2 18.6 229 20-322 73-301 (452)
55 3g06_A SSPH2 (leucine-rich rep 99.7 5E-16 1.7E-20 168.3 23.7 36 444-482 260-295 (622)
56 2z80_A TOLL-like receptor 2, v 99.7 4.4E-17 1.5E-21 165.8 14.4 280 21-398 30-314 (353)
57 1ogq_A PGIP-2, polygalacturona 99.7 9.9E-17 3.4E-21 160.2 16.4 257 22-355 50-309 (313)
58 2z80_A TOLL-like receptor 2, v 99.7 8.4E-17 2.9E-21 163.8 15.6 256 223-564 52-312 (353)
59 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-15 5.6E-20 164.3 24.7 160 222-461 140-299 (622)
60 1ogq_A PGIP-2, polygalacturona 99.7 1.3E-16 4.3E-21 159.4 14.7 251 223-563 50-301 (313)
61 3zyj_A Leucine-rich repeat-con 99.7 5.7E-16 1.9E-20 162.5 20.3 228 222-514 63-290 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.7 7.9E-17 2.7E-21 161.3 11.8 37 103-141 32-68 (317)
63 1z7x_W Ribonuclease inhibitor; 99.7 7.5E-19 2.6E-23 185.8 -4.6 111 444-562 312-436 (461)
64 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-16 1.1E-20 156.9 13.9 217 249-563 31-247 (317)
65 2z66_A Variable lymphocyte rec 99.7 1E-15 3.5E-20 152.4 17.2 136 221-398 124-261 (306)
66 1ozn_A Reticulon 4 receptor; N 99.7 3.2E-15 1.1E-19 147.2 18.3 85 47-141 31-115 (285)
67 2z66_A Variable lymphocyte rec 99.6 1.9E-15 6.6E-20 150.4 16.2 252 227-571 11-265 (306)
68 3oja_A Leucine-rich immune mol 99.6 2.6E-15 9E-20 159.1 16.3 102 443-560 167-269 (487)
69 1ozn_A Reticulon 4 receptor; N 99.6 5.8E-15 2E-19 145.3 16.3 206 222-482 31-236 (285)
70 2xwt_C Thyrotropin receptor; s 99.6 6.9E-15 2.4E-19 140.7 15.5 86 48-142 31-116 (239)
71 3oja_A Leucine-rich immune mol 99.6 5.4E-16 1.8E-20 164.4 7.9 239 221-538 32-271 (487)
72 2xwt_C Thyrotropin receptor; s 99.6 1.9E-14 6.4E-19 137.7 15.1 42 253-296 32-73 (239)
73 4ay9_X Follicle-stimulating ho 99.6 1.4E-13 4.6E-18 139.7 20.9 243 226-537 12-254 (350)
74 2ast_B S-phase kinase-associat 99.6 2.2E-15 7.4E-20 152.1 6.6 260 22-355 47-311 (336)
75 2o6q_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 134.9 17.7 86 221-322 131-216 (270)
76 4ay9_X Follicle-stimulating ho 99.5 2.2E-13 7.5E-18 138.2 19.0 226 223-512 30-255 (350)
77 1wwl_A Monocyte differentiatio 99.5 5.9E-15 2E-19 147.2 6.7 253 20-348 41-307 (312)
78 2z62_A TOLL-like receptor 4, v 99.5 2.7E-13 9.4E-18 132.6 17.7 108 21-142 27-135 (276)
79 2z62_A TOLL-like receptor 4, v 99.5 2.4E-13 8.1E-18 133.0 16.8 81 49-140 29-109 (276)
80 1p9a_G Platelet glycoprotein I 99.5 3.2E-13 1.1E-17 133.0 17.2 199 221-482 8-206 (290)
81 2ast_B S-phase kinase-associat 99.5 1.4E-14 4.8E-19 146.2 7.2 108 48-179 47-156 (336)
82 1wwl_A Monocyte differentiatio 99.5 3.1E-14 1.1E-18 142.0 9.0 230 24-322 65-307 (312)
83 3rfs_A Internalin B, repeat mo 99.5 1.6E-13 5.5E-18 133.9 13.7 224 20-355 17-240 (272)
84 3rfs_A Internalin B, repeat mo 99.5 9.3E-14 3.2E-18 135.6 11.3 202 20-329 39-240 (272)
85 1p9a_G Platelet glycoprotein I 99.5 7.4E-13 2.5E-17 130.3 17.8 207 275-572 7-213 (290)
86 2o6q_A Variable lymphocyte rec 99.5 1.2E-12 4.1E-17 127.5 18.1 199 224-481 17-215 (270)
87 1h6u_A Internalin H; cell adhe 99.5 9.4E-13 3.2E-17 130.9 16.1 79 45-140 38-116 (308)
88 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.7E-17 130.5 15.3 190 20-322 39-228 (308)
89 4glp_A Monocyte differentiatio 99.4 1.3E-12 4.5E-17 130.0 11.5 118 20-142 89-208 (310)
90 3m19_A Variable lymphocyte rec 99.3 8.9E-12 3E-16 119.9 14.6 85 222-322 106-190 (251)
91 3m19_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 118.8 14.5 177 22-289 14-190 (251)
92 2ca6_A RAN GTPase-activating p 99.3 2.3E-13 8E-18 140.0 0.4 140 223-398 159-316 (386)
93 4glp_A Monocyte differentiatio 99.3 1.2E-11 4.1E-16 123.1 12.3 143 222-399 90-238 (310)
94 1h6t_A Internalin B; cell adhe 99.3 2.5E-11 8.4E-16 119.5 13.4 80 45-141 43-122 (291)
95 1h6t_A Internalin B; cell adhe 99.3 3.3E-11 1.1E-15 118.6 14.2 172 20-294 44-215 (291)
96 3goz_A Leucine-rich repeat-con 99.3 6.6E-13 2.2E-17 135.3 1.8 119 15-142 15-149 (362)
97 3goz_A Leucine-rich repeat-con 99.3 1.1E-12 3.7E-17 133.7 2.1 108 27-142 3-120 (362)
98 2ca6_A RAN GTPase-activating p 99.2 5.5E-13 1.9E-17 137.2 -0.3 256 219-540 28-314 (386)
99 1m9s_A Internalin B; cell inva 99.2 5.3E-11 1.8E-15 128.8 13.5 63 221-295 151-213 (605)
100 4ezg_A Putative uncharacterize 99.2 2.1E-10 7.1E-15 105.8 13.9 82 45-141 41-122 (197)
101 1m9s_A Internalin B; cell inva 99.2 7.5E-11 2.6E-15 127.5 12.5 189 21-322 20-208 (605)
102 4ezg_A Putative uncharacterize 99.2 1.8E-10 6.1E-15 106.3 11.6 131 221-398 42-172 (197)
103 3cvr_A Invasion plasmid antige 99.1 5.9E-10 2E-14 119.3 14.9 70 49-140 60-129 (571)
104 2xot_A Amphoterin-induced prot 99.1 4.1E-10 1.4E-14 114.5 12.2 174 25-289 21-200 (361)
105 2xot_A Amphoterin-induced prot 99.1 1.1E-09 3.6E-14 111.4 14.9 174 51-322 21-200 (361)
106 1xeu_A Internalin C; cellular 99.1 2.4E-10 8.1E-15 110.6 9.5 99 20-140 17-115 (263)
107 2o6s_A Variable lymphocyte rec 99.1 5.7E-10 1.9E-14 103.9 11.4 109 20-141 26-134 (208)
108 3cvr_A Invasion plasmid antige 99.1 2.1E-09 7.3E-14 114.9 16.3 176 223-482 59-241 (571)
109 2o6s_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 103.0 11.1 132 310-481 27-158 (208)
110 3sb4_A Hypothetical leucine ri 99.0 6.2E-10 2.1E-14 111.6 10.4 102 222-343 225-327 (329)
111 2v70_A SLIT-2, SLIT homolog 2 99.0 2.3E-09 8E-14 100.6 13.1 85 222-322 80-164 (220)
112 2v9t_B SLIT homolog 2 protein 99.0 1.2E-09 4.1E-14 102.6 10.9 133 21-176 31-163 (220)
113 2v9t_B SLIT homolog 2 protein 99.0 3E-09 1E-13 99.8 13.4 126 3-141 36-162 (220)
114 1xeu_A Internalin C; cellular 99.0 7.5E-10 2.6E-14 107.1 8.9 124 221-397 17-140 (263)
115 3e6j_A Variable lymphocyte rec 99.0 3.1E-09 1.1E-13 100.4 13.0 133 20-176 38-170 (229)
116 2v70_A SLIT-2, SLIT homolog 2 99.0 3.9E-09 1.3E-13 99.0 13.4 151 2-176 14-164 (220)
117 3e6j_A Variable lymphocyte rec 99.0 1.9E-09 6.7E-14 101.8 11.2 128 2-143 43-171 (229)
118 3sb4_A Hypothetical leucine ri 98.9 8.6E-09 3E-13 103.2 13.8 264 222-560 48-328 (329)
119 2ell_A Acidic leucine-rich nuc 98.9 5.4E-09 1.8E-13 93.5 8.6 137 20-177 22-159 (168)
120 2je0_A Acidic leucine-rich nuc 98.9 3.5E-09 1.2E-13 92.6 7.2 133 20-173 15-148 (149)
121 2ell_A Acidic leucine-rich nuc 98.8 4.3E-09 1.5E-13 94.2 7.7 128 2-142 27-158 (168)
122 4fs7_A Uncharacterized protein 98.8 5.4E-07 1.9E-11 92.5 22.7 102 440-558 292-393 (394)
123 4fdw_A Leucine rich hypothetic 98.8 7.9E-07 2.7E-11 91.1 23.7 261 222-562 112-379 (401)
124 1w8a_A SLIT protein; signaling 98.8 2.5E-08 8.5E-13 91.4 11.0 109 22-142 29-137 (192)
125 2wfh_A SLIT homolog 2 protein 98.8 2.9E-08 9.8E-13 91.0 11.2 108 21-142 30-137 (193)
126 2je0_A Acidic leucine-rich nuc 98.8 7.3E-09 2.5E-13 90.6 6.4 125 2-139 20-148 (149)
127 1dce_A Protein (RAB geranylger 98.8 3.5E-10 1.2E-14 121.6 -3.1 103 221-343 461-566 (567)
128 1dce_A Protein (RAB geranylger 98.8 8.2E-11 2.8E-15 126.4 -8.0 34 221-260 347-380 (567)
129 4fdw_A Leucine rich hypothetic 98.8 2.3E-06 7.9E-11 87.6 25.4 225 45-355 110-339 (401)
130 1a9n_A U2A', U2A'; complex (nu 98.7 2.3E-08 7.7E-13 90.2 8.8 39 250-289 86-124 (176)
131 2o6r_A Variable lymphocyte rec 98.7 8.2E-08 2.8E-12 86.6 11.0 109 21-142 27-135 (177)
132 1a9n_A U2A', U2A'; complex (nu 98.7 4.5E-08 1.5E-12 88.2 8.6 137 19-177 16-152 (176)
133 1w8a_A SLIT protein; signaling 98.6 1.9E-07 6.4E-12 85.4 11.7 129 226-398 11-139 (192)
134 2wfh_A SLIT homolog 2 protein 98.6 3E-07 1E-11 84.1 12.3 127 226-398 13-139 (193)
135 4fs7_A Uncharacterized protein 98.6 1.1E-05 3.6E-10 82.8 24.5 36 440-478 338-373 (394)
136 2o6r_A Variable lymphocyte rec 98.6 4.1E-07 1.4E-11 81.9 11.7 129 225-398 9-137 (177)
137 3g39_A Variable lymphocyte rec 98.4 9.7E-07 3.3E-11 78.9 9.7 103 24-142 11-113 (170)
138 1ds9_A Outer arm dynein; leuci 98.4 6.4E-09 2.2E-13 95.8 -5.2 110 17-143 43-152 (198)
139 2r9u_A Variable lymphocyte rec 98.4 1.1E-06 3.8E-11 78.8 9.6 102 25-142 15-116 (174)
140 4b8c_D Glucose-repressible alc 98.4 2.7E-07 9.4E-12 102.2 6.3 109 45-178 221-329 (727)
141 4b8c_D Glucose-repressible alc 98.3 6.4E-07 2.2E-11 99.3 7.6 114 436-565 215-328 (727)
142 1ds9_A Outer arm dynein; leuci 98.3 1.9E-08 6.4E-13 92.7 -4.9 37 101-140 66-102 (198)
143 3e4g_A ATP synthase subunit S, 98.3 9.3E-07 3.2E-11 78.3 5.8 94 445-544 61-154 (176)
144 3e4g_A ATP synthase subunit S, 98.3 4.8E-07 1.7E-11 80.1 4.0 38 225-267 63-100 (176)
145 3g39_A Variable lymphocyte rec 98.2 3.8E-06 1.3E-10 74.9 9.0 105 2-120 12-116 (170)
146 2r9u_A Variable lymphocyte rec 98.2 4E-06 1.4E-10 75.1 9.1 105 3-121 16-120 (174)
147 2ra8_A Uncharacterized protein 98.1 1.2E-06 4.1E-11 88.2 4.1 87 45-140 136-228 (362)
148 3un9_A NLR family member X1; l 98.1 3.1E-07 1E-11 93.2 -1.2 94 222-322 154-250 (372)
149 2ifg_A High affinity nerve gro 98.0 1.3E-05 4.5E-10 80.5 9.7 102 26-142 12-114 (347)
150 3un9_A NLR family member X1; l 98.0 4.6E-07 1.6E-11 91.9 -2.3 93 45-142 69-166 (372)
151 4gt6_A Cell surface protein; l 97.9 0.00071 2.4E-08 69.0 20.3 113 433-562 253-366 (394)
152 4gt6_A Cell surface protein; l 97.9 0.0028 9.7E-08 64.5 23.5 297 15-396 56-368 (394)
153 2ra8_A Uncharacterized protein 97.8 5.5E-05 1.9E-09 76.0 8.7 14 275-288 169-182 (362)
154 2ifg_A High affinity nerve gro 97.6 0.00011 3.7E-09 73.7 8.9 68 221-296 29-97 (347)
155 4h09_A Hypothetical leucine ri 97.4 0.097 3.3E-06 52.6 27.0 106 249-394 237-342 (379)
156 4h09_A Hypothetical leucine ri 97.1 0.087 3E-06 52.9 22.4 104 221-345 238-341 (379)
157 1io0_A Tropomodulin; LRR prote 96.7 0.00083 2.9E-08 60.4 3.6 40 102-141 33-75 (185)
158 1io0_A Tropomodulin; LRR prote 96.0 0.0016 5.4E-08 58.6 0.9 62 222-285 64-128 (185)
159 3rw6_A Nuclear RNA export fact 95.9 0.0051 1.7E-07 58.5 4.3 43 250-294 168-211 (267)
160 3rw6_A Nuclear RNA export fact 95.4 0.014 4.9E-07 55.4 5.2 12 103-114 194-205 (267)
161 3rfe_A Platelet glycoprotein I 83.0 1.8 6.2E-05 35.7 5.5 37 105-143 31-67 (130)
162 3rfe_A Platelet glycoprotein I 78.7 2 6.9E-05 35.4 4.3 13 275-287 52-64 (130)
163 1pgv_A TMD-1, tropomodulin TMD 76.0 1.1 3.9E-05 39.9 2.1 39 223-262 98-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 64.9 3 0.0001 37.1 2.3 39 222-261 69-107 (197)
165 2lz0_A Uncharacterized protein 20.9 74 0.0025 24.4 3.2 45 433-480 8-52 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.6e-29 Score=277.35 Aligned_cols=488 Identities=16% Similarity=0.152 Sum_probs=274.5
Q ss_pred ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689 2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80 (595)
Q Consensus 2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 80 (595)
+.|+|..|.+ .+.+..|+.+++|++|++++|......+..+ +++++|++|+|++| .++.+.+. .+..+++|
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~-----~~~~l~~L 107 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF--QSQHRLDTLVLTAN-PLIFMAET-----ALSGPKAL 107 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTT--TTCTTCCEEECTTC-CCSEECTT-----TTSSCTTC
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhc--cCccccCeeeCCCC-cccccChh-----hhcccccc
Confidence 5677777765 3446677788888888888887643323334 78888888888888 67666444 45677888
Q ss_pred cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecc-c--------
Q 036689 81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVV-D-------- 151 (595)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~-------- 151 (595)
++|+++++ .+..+. +..+..+++|++|++++| .++.++. +.+..+++|++|++++|. +..++.. .
T Consensus 108 ~~L~L~~n-~i~~l~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 108 KHLFFIQT-GISSID--FIPLHNQKTLESLYLGSN-HISSIKL-PKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATN 181 (606)
T ss_dssp CEEECTTS-CCSCGG--GSCCTTCTTCCEEECCSS-CCCCCCC-CTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCS
T ss_pred cEeecccc-CcccCC--cchhccCCcccEEECCCC-cccccCc-ccccCCcccCEEEcccCc-ccccChhhhhhhcccce
Confidence 88888885 566542 233677888888888884 5555433 223347788888887743 3333210 0
Q ss_pred -------CcccccccccccccccceEecCCCCCccccccccccccccccccccccCccc-------------------cc
Q 036689 152 -------GEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKIS-------------------SL 205 (595)
Q Consensus 152 -------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 205 (595)
..........+...+|+.|+++++..+.....+........+....+.+... .+
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 0000001122233445555555444222211111000010010000000000 00
Q ss_pred cc--cccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEE
Q 036689 206 ED--KLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHL 283 (595)
Q Consensus 206 ~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L 283 (595)
.+ ....+... ...+++|++|++++|.++.+ |.++ ..+++|++|+++++ .++...+. .+..+++|++|
T Consensus 262 ~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~l-----p~~l-~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L 330 (606)
T 3t6q_A 262 QKHYFFNISSNT---FHCFSGLQELDLTATHLSEL-----PSGL-VGLSTLKKLVLSAN-KFENLCQI-SASNFPSLTHL 330 (606)
T ss_dssp TTCCCSSCCTTT---TTTCTTCSEEECTTSCCSCC-----CSSC-CSCTTCCEEECTTC-CCSBGGGG-CGGGCTTCSEE
T ss_pred ecCccCccCHHH---hccccCCCEEeccCCccCCC-----Chhh-cccccCCEEECccC-CcCcCchh-hhhccCcCCEE
Confidence 00 00111111 12355666666666655544 4443 45566666666654 34443232 34566666666
Q ss_pred EeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc-CCCccccCcccceeeecCCCCccccccccccccC
Q 036689 284 EIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY-PGMHTSEWPALKLLDVSACDQVTVFDSELFSFCE 362 (595)
Q Consensus 284 ~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 362 (595)
++++|.....++..... .+++|++|+++++. +.... .......+++|+.|++++|.... ++.
T Consensus 331 ~l~~n~~~~~~~~~~~~--------~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~------- 393 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLE--------NLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKT------- 393 (606)
T ss_dssp ECCSCSSCCBCCSSTTT--------TCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEE-ECT-------
T ss_pred ECCCCCcccccchhhhh--------ccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCc-CCH-------
Confidence 66666522233321111 26666666666644 22221 01112225667777766654322 222
Q ss_pred CCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCcc
Q 036689 363 SSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSV 442 (595)
Q Consensus 363 ~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~ 442 (595)
..+..+++|++|++++|+....... .....+++|+.|+++ .+.+....+..+.
T Consensus 394 ----------------~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~----------~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 394 ----------------EAFKECPQLELLDLAFTRLKVKDAQ-SPFQNLHLLKVLNLS----------HSLLDISSEQLFD 446 (606)
T ss_dssp ----------------TTTTTCTTCSEEECTTCCEECCTTC-CTTTTCTTCCEEECT----------TCCCBTTCTTTTT
T ss_pred ----------------HHhcCCccCCeEECCCCcCCCcccc-hhhhCcccCCEEECC----------CCccCCcCHHHHh
Confidence 2245678888888888876543221 123467788888884 3556666666778
Q ss_pred ccCCccEEeEeCCCCCcc--cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccc
Q 036689 443 SFRNLKILEVSGCKKLTN--LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFC 520 (595)
Q Consensus 443 ~l~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 520 (595)
.+++|+.|+++++. +.. ++....++.+++|++|++++|. +++++..... .+++|+.|+++++ .++...
T Consensus 447 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~ 516 (606)
T 3t6q_A 447 GLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-------SLKMMNHVDLSHN-RLTSSS 516 (606)
T ss_dssp TCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCCGGG
T ss_pred CCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhc-------cccCCCEEECCCC-ccCcCC
Confidence 89999999999854 443 2222456788999999999986 6666443322 4889999999996 555554
Q ss_pred cCcccccCCCccEEEEeCCCCccccC-CCCCCCCCcceEEeccCCCccccCch
Q 036689 521 SGNYIFKFPSLEVLFVVGCPKMNIFT-TGELSTPPRVDVMYRNRGAPCWDGDL 572 (595)
Q Consensus 521 ~~~~~~~~~~L~~L~l~~C~~l~~lp-~~~~~~~~L~~l~i~~~~~~~~~~~~ 572 (595)
.... ..++.| +|++++| +++.+| ..+..+++|+++++++|. |.++...
T Consensus 517 ~~~l-~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-~~c~c~~ 565 (606)
T 3t6q_A 517 IEAL-SHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP-LDCTCSN 565 (606)
T ss_dssp GGGG-TTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC-EECSGGG
T ss_pred hhHh-Cccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC-ccccCCc
Confidence 3332 357888 9999998 455554 445678999999998654 5555443
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.2e-28 Score=270.52 Aligned_cols=482 Identities=16% Similarity=0.137 Sum_probs=298.2
Q ss_pred ceeccccccc-ccCcccccccccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC
Q 036689 2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI 79 (595)
Q Consensus 2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 79 (595)
+.|+|..|.+ .+.+..|+.+++|++|+++++... .+.+ .+ +++++|++|+|++| .++.+.+. .+..+++
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~--~~l~~L~~L~Ls~n-~l~~~~p~-----~~~~l~~ 105 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAW--HGLHHLSNLILTGN-PIQSFSPG-----SFSGLTS 105 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTT--TTCTTCCEEECTTC-CCCCCCTT-----SSTTCTT
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHh--hchhhcCEeECCCC-cccccChh-----hcCCccc
Confidence 5677777765 344667778899999999988763 3333 34 78999999999988 57766444 5678899
Q ss_pred ccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccC-------
Q 036689 80 LESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDG------- 152 (595)
Q Consensus 80 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~------- 152 (595)
|++|+++++ .+..+.. ..++.+++|++|++++| .++....+..++++++|++|++++| .+..++....
T Consensus 106 L~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 106 LENLVAVET-KLASLES--FPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENP 180 (606)
T ss_dssp CCEEECTTS-CCCCSSS--SCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCT
T ss_pred CCEEEccCC-ccccccc--cccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccc
Confidence 999999996 6666532 33788999999999996 5554322267888999999999985 4444432100
Q ss_pred -----------cccccccccccccccceEecCCCCCcccc-cccc-cccccc--ccccccccCcc--c------------
Q 036689 153 -----------EYDAIDHQKIEFGQLSTLCLGSLPELTSF-CCEV-KKNRQA--QGMHETCSNKI--S------------ 203 (595)
Q Consensus 153 -----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~-~~~~~~--~~~~~~~~~~~--~------------ 203 (595)
....+....+...+|+.|+++++..-... +... ....+. .+....+.+.. .
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 00001112223336666666654321000 0000 000000 00000000000 0
Q ss_pred -cccc----cccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccC
Q 036689 204 -SLED----KLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFE 278 (595)
Q Consensus 204 -~~~~----~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~ 278 (595)
.+.. ..............+++|+.|+++++.+..+ | ++ ..+++|++|++++|.. +.++. + .++
T Consensus 261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-----~-~l-~~~~~L~~L~l~~n~l-~~lp~---~-~l~ 328 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-----E-DV-PKHFKWQSLSIIRCQL-KQFPT---L-DLP 328 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC-----C-CC-CTTCCCSEEEEESCCC-SSCCC---C-CCS
T ss_pred ccHhheeccccccccccccccccCCCCCEEEecCccchhh-----h-hc-cccccCCEEEcccccC-ccccc---C-CCC
Confidence 0000 0000000011133567788888887766655 3 22 4577888888887744 55432 2 778
Q ss_pred CCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc-CCCccccCcccceeeecCCCCcccccccc
Q 036689 279 HLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY-PGMHTSEWPALKLLDVSACDQVTVFDSEL 357 (595)
Q Consensus 279 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 357 (595)
+|++|++++|..+..+.. ..+++|++|+++++. +.... .......+++|+.|++++|. ++.+|.
T Consensus 329 ~L~~L~l~~n~~~~~~~~-----------~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-- 393 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISFKK-----------VALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA-- 393 (606)
T ss_dssp SCCEEEEESCSSCEECCC-----------CCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECC--
T ss_pred ccceeeccCCcCccchhh-----------ccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchh--
Confidence 888888888754443311 127888888888754 33321 01112236788888888775 444443
Q ss_pred ccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC
Q 036689 358 FSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL 437 (595)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~ 437 (595)
.+..+++|++|++++|......+. .....+++|+.|+++ .+.+....
T Consensus 394 ----------------------~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~----------~n~l~~~~ 440 (606)
T 3vq2_A 394 ----------------------NFMGLEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDIS----------YTNTKIDF 440 (606)
T ss_dssp ----------------------CCTTCTTCCEEECTTSEEESTTTT-TTTTTCTTCCEEECT----------TSCCEECC
T ss_pred ----------------------hccCCCCCCeeECCCCccCCccCh-hhhhccccCCEEECc----------CCCCCccc
Confidence 146789999999999876654321 223467889999994 35566666
Q ss_pred CCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccc
Q 036689 438 PSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLT 517 (595)
Q Consensus 438 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 517 (595)
+..+..+++|+.|++++| .+........++.+++|++|++++|. ++.++..... .+++|+.|+++++ .++
T Consensus 441 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~ 510 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD-------TLHRLQLLNMSHN-NLL 510 (606)
T ss_dssp TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCS
T ss_pred hhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhhhc-------ccccCCEEECCCC-cCC
Confidence 667888999999999985 45542122445788999999999996 6666443322 4899999999997 565
Q ss_pred cc-ccCcccccCCCccEEEEeCCCCccccCCCCCCCC-CcceEEeccCCCccccCc
Q 036689 518 SF-CSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTP-PRVDVMYRNRGAPCWDGD 571 (595)
Q Consensus 518 ~l-~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~-~L~~l~i~~~~~~~~~~~ 571 (595)
.+ +... ..+++|++|++++| +++.+|..+..++ +|+++++++|. |.++..
T Consensus 511 ~~~~~~~--~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~-~~c~c~ 562 (606)
T 3vq2_A 511 FLDSSHY--NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS-VACICE 562 (606)
T ss_dssp CEEGGGT--TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC-CCCSST
T ss_pred CcCHHHc--cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC-cccCCc
Confidence 55 4333 34899999999998 5889998887787 59999998654 444333
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.5e-29 Score=282.71 Aligned_cols=464 Identities=14% Similarity=0.022 Sum_probs=258.0
Q ss_pred eecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccE
Q 036689 3 TLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILES 82 (595)
Q Consensus 3 ~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~ 82 (595)
.++++++++.-.+++|+.+++|++|+|++|...+.++.....+.+++|++|+|++| .+....+. .....+++|++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~----~~~~~l~~L~~ 155 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN-TLDFPGKV----SGGLKLNSLEV 155 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSS-EEECCSSC----CSCCCCTTCSE
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCC-ccCCcCCH----HHhccCCCCCE
Confidence 34445554211146777889999999998887555555212388999999999888 45433222 12256788888
Q ss_pred EeccCccCcccccccc-ccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689 83 LNLYNLIKLERICQDR-LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK 161 (595)
Q Consensus 83 L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 161 (595)
|+++++ ++....... ..+..+++|++|++++| .+....+ +..+++|++|++++|.....++ ..
T Consensus 156 L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~-----------~l 219 (768)
T 3rgz_A 156 LDLSAN-SISGANVVGWVLSDGCGELKHLAISGN-KISGDVD---VSRCVNLEFLDVSSNNFSTGIP-----------FL 219 (768)
T ss_dssp EECCSS-CCEEETHHHHHHTTCCTTCCEEECCSS-EEESCCB---CTTCTTCCEEECCSSCCCSCCC-----------BC
T ss_pred EECCCC-ccCCcCChhhhhhccCCCCCEEECCCC-cccccCC---cccCCcCCEEECcCCcCCCCCc-----------cc
Confidence 888886 555431110 00456777777777775 3444322 2567777777777755433222 13
Q ss_pred ccccccceEecCCCCCcccccccc-ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecc
Q 036689 162 IEFGQLSTLCLGSLPELTSFCCEV-KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH 240 (595)
Q Consensus 162 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 240 (595)
..+++|++|+++++.--..++... ....++.+....|.-. . ... ...+++|++|++++|.++..
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--------~----~~~-~~~l~~L~~L~L~~n~l~~~-- 284 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--------G----PIP-PLPLKSLQYLSLAENKFTGE-- 284 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE--------E----SCC-CCCCTTCCEEECCSSEEEES--
T ss_pred ccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc--------C----ccC-ccccCCCCEEECcCCccCCc--
Confidence 345666666666654222222111 1111111111111100 0 000 01466777777777766522
Q ss_pred cCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccc-eecccccCCCCCCCCcCCCcccEEeec
Q 036689 241 NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQ-EIISKEGADDQVPPNFVFPQVTILRLV 319 (595)
Q Consensus 241 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~L~ 319 (595)
+|.+++..+++|++|++++| .++...+. .++++++|++|++++|. ++ .++...... +++|++|+++
T Consensus 285 --ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~-~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~--------l~~L~~L~Ls 351 (768)
T 3rgz_A 285 --IPDFLSGACDTLTGLDLSGN-HFYGAVPP-FFGSCSLLESLALSSNN-FSGELPMDTLLK--------MRGLKVLDLS 351 (768)
T ss_dssp --CCCCSCTTCTTCSEEECCSS-EEEECCCG-GGGGCTTCCEEECCSSE-EEEECCHHHHTT--------CTTCCEEECC
T ss_pred --cCHHHHhhcCcCCEEECcCC-cCCCccch-HHhcCCCccEEECCCCc-ccCcCCHHHHhc--------CCCCCEEeCc
Confidence 24444233477888888765 34433333 35777788888887776 54 444321222 6777888877
Q ss_pred CCCCcccccCCCccccCc-ccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCe
Q 036689 320 GLPELKCLYPGMHTSEWP-ALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIR 398 (595)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 398 (595)
++.-...++.... .++ +|+.|++++|.....+|..+. ...+++|++|++++|...
T Consensus 352 ~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~~~~~~----------------------~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 352 FNEFSGELPESLT--NLSASLLTLDLSSNNFSGPILPNLC----------------------QNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SSEEEECCCTTHH--HHTTTCSEEECCSSEEEEECCTTTT----------------------CSTTCCCCEEECCSSEEE
T ss_pred CCccCccccHHHH--hhhcCCcEEEccCCCcCCCcChhhh----------------------hcccCCccEEECCCCccc
Confidence 7643323333221 133 777777777654444444100 112566777777777655
Q ss_pred eccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEE
Q 036689 399 MIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQV 478 (595)
Q Consensus 399 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 478 (595)
+..+. ....+++|+.|++. .+.+....+..+..+++|+.|++++|. +....+ ..+..+++|++|++
T Consensus 408 ~~~p~--~l~~l~~L~~L~Ls----------~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 408 GKIPP--TLSNCSELVSLHLS----------FNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIP-QELMYVKTLETLIL 473 (768)
T ss_dssp EECCG--GGGGCTTCCEEECC----------SSEEESCCCGGGGGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEEC
T ss_pred cccCH--HHhcCCCCCEEECc----------CCcccCcccHHHhcCCCCCEEECCCCc-ccCcCC-HHHcCCCCceEEEe
Confidence 43221 12355677777773 344555555566667777777777743 443323 23456677777777
Q ss_pred cCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceE
Q 036689 479 FGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDV 558 (595)
Q Consensus 479 ~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l 558 (595)
++|.-...++.... .+++|+.|+++++.-...+|.+.. .+++|++|++++|.-...+|..+.++++|+++
T Consensus 474 ~~N~l~~~~p~~l~--------~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 474 DFNDLTGEIPSGLS--------NCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp CSSCCCSCCCGGGG--------GCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred cCCcccCcCCHHHh--------cCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 77752223332222 367777777777643335555442 37777777777775555667666677777777
Q ss_pred EeccC
Q 036689 559 MYRNR 563 (595)
Q Consensus 559 ~i~~~ 563 (595)
++++|
T Consensus 544 ~Ls~N 548 (768)
T 3rgz_A 544 DLNTN 548 (768)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 77655
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.4e-28 Score=264.16 Aligned_cols=473 Identities=14% Similarity=0.085 Sum_probs=249.0
Q ss_pred cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
..++++|+++++......+..+ +++++|++|+|++| .++.+.+. .+..+++|++|+++++ .+..+. +..
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~--~~~ 100 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTF--SRLINLTFLDLTRC-QIYWIHED-----TFQSQHRLDTLVLTAN-PLIFMA--ETA 100 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTS--TTCTTCSEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCSEEC--TTT
T ss_pred CCcCcEEEccCCccCcCChhHh--ccCccceEEECCCC-ccceeChh-----hccCccccCeeeCCCC-cccccC--hhh
Confidence 4579999999998843323344 89999999999999 78777554 5778999999999996 666552 334
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 180 (595)
++.+++|++|++++| .++.+.+ ..++++++|++|++++|. +..++. .....+++|+.|+++++. +..
T Consensus 101 ~~~l~~L~~L~L~~n-~i~~l~~-~~~~~l~~L~~L~L~~n~-l~~~~~---------~~~~~l~~L~~L~L~~n~-l~~ 167 (606)
T 3t6q_A 101 LSGPKALKHLFFIQT-GISSIDF-IPLHNQKTLESLYLGSNH-ISSIKL---------PKGFPTEKLKVLDFQNNA-IHY 167 (606)
T ss_dssp TSSCTTCCEEECTTS-CCSCGGG-SCCTTCTTCCEEECCSSC-CCCCCC---------CTTCCCTTCCEEECCSSC-CCE
T ss_pred hcccccccEeecccc-CcccCCc-chhccCCcccEEECCCCc-ccccCc---------ccccCCcccCEEEcccCc-ccc
Confidence 788999999999995 6776643 557899999999999954 443321 123347899999998864 222
Q ss_pred ccccc--cccccc--ccccccccCccccccccccCCCccccccccCCccceeeccccc-cee------------ecc---
Q 036689 181 FCCEV--KKNRQA--QGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVN-IEK------------IWH--- 240 (595)
Q Consensus 181 ~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~------------~~~--- 240 (595)
+.... ....+. .+....+. ........| ....|+.|+++++. +.. ++.
T Consensus 168 ~~~~~~~~l~~L~~l~L~l~~n~--------l~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~ 235 (606)
T 3t6q_A 168 LSKEDMSSLQQATNLSLNLNGND--------IAGIEPGAF----DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235 (606)
T ss_dssp ECHHHHHTTTTCCSEEEECTTCC--------CCEECTTTT----TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCC
T ss_pred cChhhhhhhcccceeEEecCCCc--------cCccChhHh----hhccccccccCCchhHHHHhhhccccchhheechhh
Confidence 22110 001111 11110000 001111111 23456666666541 110 000
Q ss_pred -----cCCCccccccC--CCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcc
Q 036689 241 -----NQLPVAMFLCF--QNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQV 313 (595)
Q Consensus 241 -----~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L 313 (595)
..++...+..+ .+|+.|+++++ .++.+++ ..++.+++|++|++++|. ++.++. ... .+++|
T Consensus 236 ~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~lp~-~l~--------~l~~L 303 (606)
T 3t6q_A 236 EDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISS-NTFHCFSGLQELDLTATH-LSELPS-GLV--------GLSTL 303 (606)
T ss_dssp TTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCT-TTTTTCTTCSEEECTTSC-CSCCCS-SCC--------SCTTC
T ss_pred ccccccccChhHhchhhcCceeEEEeecC-ccCccCH-HHhccccCCCEEeccCCc-cCCCCh-hhc--------ccccC
Confidence 00111110111 15666666654 4454433 234667777777777775 665543 111 26677
Q ss_pred cEEeecCCCCcccccCCCccccCcccceeeecCCCCcccccccc-ccc-cCCCCCCCCCCCCCCC-CCCcCccCCCcceE
Q 036689 314 TILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSEL-FSF-CESSEEDKPDIPAQQP-LFLPEKVFPNLEEL 390 (595)
Q Consensus 314 ~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~-~~~~~~~~~~~~~~~~-l~~~~~~l~~L~~L 390 (595)
++|+++++. +...... ....+++|+.|+++++.....++.+. ... +............... ....+..+++|++|
T Consensus 304 ~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 304 KKLVLSANK-FENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp CEEECTTCC-CSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred CEEECccCC-cCcCchh-hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence 777777654 3322211 11225667777776665443343310 000 0000000000000000 00113445555555
Q ss_pred eccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC-CCCccccCCccEEeEeCCCCCcccccchHHhh
Q 036689 391 GLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL-PSSSVSFRNLKILEVSGCKKLTNLVASSAAQS 469 (595)
Q Consensus 391 ~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 469 (595)
++++|......+. ....+++|+.|++. .+.+.... +..+..+++|+.|++++| .++...+ ..++.
T Consensus 382 ~l~~n~l~~~~~~--~~~~l~~L~~L~l~----------~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~ 447 (606)
T 3t6q_A 382 NLSYNEPLSLKTE--AFKECPQLELLDLA----------FTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDG 447 (606)
T ss_dssp ECCSCSCEEECTT--TTTTCTTCSEEECT----------TCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTT
T ss_pred ECCCCcCCcCCHH--HhcCCccCCeEECC----------CCcCCCcccchhhhCcccCCEEECCCC-ccCCcCH-HHHhC
Confidence 5555554433221 12234555555552 23333332 223556677777777764 3444322 33456
Q ss_pred cccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCC
Q 036689 470 LVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGE 549 (595)
Q Consensus 470 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~ 549 (595)
+++|++|++++|. +.+...... .....+++|+.|++++| .++.++.... ..+++|++|++++|.--...|..+
T Consensus 448 l~~L~~L~L~~n~-l~~~~~~~~----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 448 LPALQHLNLQGNH-FPKGNIQKT----NSLQTLGRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp CTTCCEEECTTCB-CGGGEECSS----CGGGGCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGGGGG
T ss_pred CCCCCEEECCCCC-CCccccccc----hhhccCCCccEEECCCC-ccCccChhhh-ccccCCCEEECCCCccCcCChhHh
Confidence 6777777777765 333111000 00113677777777775 4554533222 246777777777764333345566
Q ss_pred CCCCCcceEEeccCCC
Q 036689 550 LSTPPRVDVMYRNRGA 565 (595)
Q Consensus 550 ~~~~~L~~l~i~~~~~ 565 (595)
.++++| ++++++|.-
T Consensus 521 ~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHI 535 (606)
T ss_dssp TTCCSC-EEECCSSCC
T ss_pred Cccccc-EEECcCCcc
Confidence 667777 777776544
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.6e-27 Score=265.13 Aligned_cols=468 Identities=16% Similarity=0.108 Sum_probs=230.9
Q ss_pred ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689 2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80 (595)
Q Consensus 2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 80 (595)
+.|+|..|.+ .+.+..|+.+++|++|+++++......+..+ +.+++|++|++++| .++.+++. .+..+++|
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~l~~~-----~~~~l~~L 99 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC--QKLPMLKVLNLQHN-ELSQLSDK-----TFAFCTNL 99 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH--HHCTTCCEEECCSS-CCCCCCTT-----TTTTCTTC
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH--hcccCcCEEECCCC-ccCccChh-----hhccCCCC
Confidence 4556655554 2334456666777777777665533222222 66777777777776 55555332 34566777
Q ss_pred cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccc
Q 036689 81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQ 160 (595)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 160 (595)
++|+++++ .+..+.. ..++.+++|++|++++| .++..++ ..+.++++|++|++++|. +..++... -.
T Consensus 100 ~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~-------~~ 166 (680)
T 1ziw_A 100 TELHLMSN-SIQKIKN--NPFVKQKNLITLDLSHN-GLSSTKL-GTQVQLENLQELLLSNNK-IQALKSEE-------LD 166 (680)
T ss_dssp SEEECCSS-CCCCCCS--CTTTTCTTCCEEECCSS-CCSCCCC-CSSSCCTTCCEEECCSSC-CCCBCHHH-------HG
T ss_pred CEEECCCC-ccCccCh--hHccccCCCCEEECCCC-cccccCc-hhhcccccCCEEEccCCc-ccccCHHH-------hh
Confidence 77777775 4554422 23566777777777774 4444433 445667777777777643 33222100 01
Q ss_pred cccccccceEecCCCCCcccccccc--ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceee
Q 036689 161 KIEFGQLSTLCLGSLPELTSFCCEV--KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKI 238 (595)
Q Consensus 161 ~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 238 (595)
...+++|+.|+++++. +..+.... ....+..+....+.-. . .....+......++|+.|+++++.++.+
T Consensus 167 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~-----~---~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLG-----P---SLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp GGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCH-----H---HHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred ccccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccC-----h---hhHHHHHHHhhhccccEEEccCCccccc
Confidence 1234667777776652 22222110 0001111100000000 0 0000000001235677777777766554
Q ss_pred cccCCCccccccC--CCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEE
Q 036689 239 WHNQLPVAMFLCF--QNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTIL 316 (595)
Q Consensus 239 ~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L 316 (595)
. |.++ ..+ ++|+.|+++++ .++.+.+. .++.+++|++|++++|. ++.+++..+.+ +++|+.|
T Consensus 238 ~----~~~~-~~l~~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--------l~~L~~L 301 (680)
T 1ziw_A 238 S----NTTF-LGLKWTNLTMLDLSYN-NLNVVGND-SFAWLPQLEYFFLEYNN-IQHLFSHSLHG--------LFNVRYL 301 (680)
T ss_dssp C----TTTT-GGGGGSCCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSCC-BSEECTTTTTT--------CTTCCEE
T ss_pred C----hhHh-hccCcCCCCEEECCCC-CcCccCcc-cccCcccccEeeCCCCc-cCccChhhhcC--------CCCccEE
Confidence 2 2222 233 34777777765 34444332 34677777777777776 66655433322 6677777
Q ss_pred eecCCCCcc-----cccC--CCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcce
Q 036689 317 RLVGLPELK-----CLYP--GMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEE 389 (595)
Q Consensus 317 ~L~~~~~l~-----~~~~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 389 (595)
++.++..-. .++. ......+++|+.|+++++. ++.++. ..+..+++|++
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-----------------------~~~~~l~~L~~ 357 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS-----------------------NMFTGLINLKY 357 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-----------------------TTTTTCTTCCE
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-----------------------hHhccccCCcE
Confidence 776532111 1110 0011125667777766653 222222 11233444555
Q ss_pred EeccC----------------------------CCCeeccCCCCCcccccCceeEEeeccccccccccCccccc-cCCCC
Q 036689 390 LGLDG----------------------------KDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLI-LLPSS 440 (595)
Q Consensus 390 L~l~~----------------------------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~-~~~~~ 440 (595)
|++++ |+...+.+. ....+++|+.|++++ +.+.. +++..
T Consensus 358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~----------N~l~~~~~~~~ 425 (680)
T 1ziw_A 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD--AFSWLGHLEVLDLGL----------NEIGQELTGQE 425 (680)
T ss_dssp EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT--TTTTCTTCCEEECCS----------SCCEEECCSGG
T ss_pred EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh--hhhCCCCCCEEeCCC----------CcCccccCccc
Confidence 55544 443332221 112344455555522 22322 22233
Q ss_pred ccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCccccc---chhcccCccccccccccccccceecccccccc
Q 036689 441 SVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMT---QVVKSEGNQLAREEIVFNKLKMLSLLDLDSLT 517 (595)
Q Consensus 441 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~---~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 517 (595)
+..+++|+.|+++++ .+..+.+ ..+..+++|++|+++++. +. .++... ..+++|+.|+++++ .++
T Consensus 426 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~--------~~l~~L~~L~Ls~N-~l~ 493 (680)
T 1ziw_A 426 WRGLENIFEIYLSYN-KYLQLTR-NSFALVPSLQRLMLRRVA-LKNVDSSPSPF--------QPLRNLTILDLSNN-NIA 493 (680)
T ss_dssp GTTCTTCCEEECCSC-SEEECCT-TTTTTCTTCCEEECTTSC-CBCTTCSSCTT--------TTCTTCCEEECCSS-CCC
T ss_pred ccCcccccEEecCCC-CcceeCh-hhhhcCcccccchhcccc-ccccccCCccc--------ccCCCCCEEECCCC-CCC
Confidence 444555555555553 2333322 223445555555555543 22 111111 13677888888874 566
Q ss_pred ccccCcccccCCCccEEEEeCCCCccccCC---------CCCCCCCcceEEeccCCC
Q 036689 518 SFCSGNYIFKFPSLEVLFVVGCPKMNIFTT---------GELSTPPRVDVMYRNRGA 565 (595)
Q Consensus 518 ~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~---------~~~~~~~L~~l~i~~~~~ 565 (595)
.++.+.. ..+++|++|+++++ +++.++. .+..+++|+++++++|+-
T Consensus 494 ~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 494 NINDDML-EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp CCCTTTT-TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred cCChhhh-ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 6665543 24778888888876 4554421 245678888888887654
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2e-28 Score=275.31 Aligned_cols=271 Identities=14% Similarity=0.039 Sum_probs=136.3
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
+++|++|++++|.++.. +|..+ ..+++|+.|+++++ .++...+. .++.+++|++|++++|. ++...+.....
T Consensus 393 ~~~L~~L~L~~n~l~~~----~p~~l-~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~L~~L~L~~n~-l~~~~p~~~~~ 464 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGK----IPPTL-SNCSELVSLHLSFN-YLSGTIPS-SLGSLSKLRDLKLWLNM-LEGEIPQELMY 464 (768)
T ss_dssp TCCCCEEECCSSEEEEE----CCGGG-GGCTTCCEEECCSS-EEESCCCG-GGGGCTTCCEEECCSSC-CCSCCCGGGGG
T ss_pred cCCccEEECCCCccccc----cCHHH-hcCCCCCEEECcCC-cccCcccH-HHhcCCCCCEEECCCCc-ccCcCCHHHcC
Confidence 34566666666655422 13333 45566666666654 33322222 24556666666666665 44322212211
Q ss_pred CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689 302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE 381 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 381 (595)
+++|++|+++++.....++... ..+++|+.|++++|.....+|. .+
T Consensus 465 --------l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~------------------------~~ 510 (768)
T 3rgz_A 465 --------VKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPK------------------------WI 510 (768)
T ss_dssp --------CTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCG------------------------GG
T ss_pred --------CCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCCh------------------------HH
Confidence 5666666666654322222221 1256666666666654434444 13
Q ss_pred ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeecccc----ccccccC---------------------------
Q 036689 382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDAS----AAVVSSC--------------------------- 430 (595)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~----~l~~~~~--------------------------- 430 (595)
+.+++|++|++++|+..+..+. ....+++|+.|++++.+- .-.+..+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred hcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence 5677788888888776653332 234567777777754321 0000000
Q ss_pred -----------------------------ccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCc
Q 036689 431 -----------------------------DNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGC 481 (595)
Q Consensus 431 -----------------------------~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 481 (595)
+.+....+..+..+++|+.|++++ +.++...+. .++.++.|++|+++++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~-N~l~g~ip~-~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY-NMLSGYIPK-EIGSMPYLFILNLGHN 666 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS-SCCBSCCCG-GGGGCTTCCEEECCSS
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC-CcccccCCH-HHhccccCCEEeCcCC
Confidence 000111122333456666777766 345443332 3466667777777666
Q ss_pred ccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCC
Q 036689 482 RAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTG 548 (595)
Q Consensus 482 ~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~ 548 (595)
.-...+|...+. +++|+.|+++++.--..+|... ..+++|++|++++|+--+.+|.+
T Consensus 667 ~l~g~ip~~l~~--------L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 667 DISGSIPDEVGD--------LRGLNILDLSSNKLDGRIPQAM--SALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCSCCCGGGGG--------CTTCCEEECCSSCCEECCCGGG--GGCCCCSEEECCSSEEEEECCSS
T ss_pred ccCCCCChHHhC--------CCCCCEEECCCCcccCcCChHH--hCCCCCCEEECcCCcccccCCCc
Confidence 532344443333 6667777777653333555444 23666777777766444455544
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.4e-27 Score=260.06 Aligned_cols=439 Identities=14% Similarity=0.076 Sum_probs=280.5
Q ss_pred cccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+++++|+++++... .+++ .+ .++++|++|++++| .++.+.+. .+..+++|++|+++++ .++.+. +.
T Consensus 31 ~~~l~~L~Ls~n~l~-~~~~~~~--~~l~~L~~L~Ls~n-~l~~i~~~-----~~~~l~~L~~L~Ls~n-~l~~~~--p~ 98 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLK-ILKSYSF--SNFSELQWLDLSRC-EIETIEDK-----AWHGLHHLSNLILTGN-PIQSFS--PG 98 (606)
T ss_dssp CTTCCEEECTTSCCC-EECTTTT--TTCTTCCEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCCCC--TT
T ss_pred CCCcCEEECCCCCcC-EeChhhc--cCCccCcEEeCCCC-cccccCHH-----HhhchhhcCEeECCCC-cccccC--hh
Confidence 478999999999874 3333 34 89999999999999 78887554 5678999999999996 666653 33
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcc-eeecccCcccccccccccccccceEecCCCCCc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQ-EIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPEL 178 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 178 (595)
.++.+++|++|++++| .++.+++ ..++++++|++|++++|.... .+| .....+++|++|+++++. +
T Consensus 99 ~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp----------~~~~~l~~L~~L~Ls~n~-l 165 (606)
T 3vq2_A 99 SFSGLTSLENLVAVET-KLASLES-FPIGQLITLKKLNVAHNFIHSCKLP----------AYFSNLTNLVHVDLSYNY-I 165 (606)
T ss_dssp SSTTCTTCCEEECTTS-CCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCC----------GGGGTCTTCCEEECCSSC-C
T ss_pred hcCCcccCCEEEccCC-ccccccc-cccCCCCCCCEEeCCCCcccceech----------HhHhhcCCCCEEEccCCc-c
Confidence 4789999999999996 6666654 458899999999999965332 233 235568999999999864 3
Q ss_pred ccccccc--cccccc----ccccccccCccccccccccCCCccccccccCCccceeeccccccee-e-------------
Q 036689 179 TSFCCEV--KKNRQA----QGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEK-I------------- 238 (595)
Q Consensus 179 ~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~------------- 238 (595)
....... ....+. .+....+. ....+...| ...+|+.|++++|.+.. .
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~--------l~~~~~~~~----~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNP--------IDFIQDQAF----QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCC--------CCEECTTTT----TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred eecChhhhhhhhccccccceeeccCCC--------cceeCcccc----cCceeeeeeccCCccchhHHHHHhcccccccc
Confidence 3332211 000110 01110000 001111112 13368888888774320 0
Q ss_pred ------------------------------------c----ccCCCccccccCCCccEEEEecCCCCccccchhhhhccC
Q 036689 239 ------------------------------------W----HNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFE 278 (595)
Q Consensus 239 ------------------------------------~----~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~ 278 (595)
. .+..|. +..+++|+.|+++++ .++.++ .+..++
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~-~~~~l~---~l~~~~ 307 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGV-SIKYLE---DVPKHF 307 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESC-CCCCCC---CCCTTC
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCc-cchhhh---hccccc
Confidence 0 000111 134566666666654 334433 235566
Q ss_pred CCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccc
Q 036689 279 HLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELF 358 (595)
Q Consensus 279 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 358 (595)
+|++|++++|. ++.++. . .+++|++|+++++..+...... .+++|+.|+++++.. +..+.
T Consensus 308 ~L~~L~l~~n~-l~~lp~--~---------~l~~L~~L~l~~n~~~~~~~~~----~l~~L~~L~ls~n~l-~~~~~--- 367 (606)
T 3vq2_A 308 KWQSLSIIRCQ-LKQFPT--L---------DLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRNAL-SFSGC--- 367 (606)
T ss_dssp CCSEEEEESCC-CSSCCC--C---------CCSSCCEEEEESCSSCEECCCC----CCTTCCEEECCSSCE-EEEEE---
T ss_pred cCCEEEccccc-Cccccc--C---------CCCccceeeccCCcCccchhhc----cCCCCCEEECcCCcc-CCCcc---
Confidence 66666666666 444442 1 1666777777666544443222 266777777766532 22210
Q ss_pred cccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCC
Q 036689 359 SFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLP 438 (595)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~ 438 (595)
....+..+++|++|++++|....+. .....+++|+.|++. .+.+....+
T Consensus 368 ------------------~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~----------~n~l~~~~~ 416 (606)
T 3vq2_A 368 ------------------CSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQ----------HSTLKRVTE 416 (606)
T ss_dssp ------------------CCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECT----------TSEEESTTT
T ss_pred ------------------hhhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECC----------CCccCCccC
Confidence 0012356788888888888755433 234467888888884 345665555
Q ss_pred -CCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccc-hhcccCccccccccccccccceeccccccc
Q 036689 439 -SSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQ-VVKSEGNQLAREEIVFNKLKMLSLLDLDSL 516 (595)
Q Consensus 439 -~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~-i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 516 (595)
..+..+++|+.|++++|. +....+ ..++.+++|++|++++|. +.. +...... .+++|+.|++++| .+
T Consensus 417 ~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-------~l~~L~~L~Ls~n-~l 485 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGNS-FKDNTLSNVFA-------NTTNLTFLDLSKC-QL 485 (606)
T ss_dssp TTTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCT-------TCTTCCEEECTTS-CC
T ss_pred hhhhhccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCCc-CCCcchHHhhc-------cCCCCCEEECCCC-cC
Confidence 567789999999999964 555433 345788999999999997 444 2222222 4899999999997 56
Q ss_pred cccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCC
Q 036689 517 TSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGA 565 (595)
Q Consensus 517 ~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~ 565 (595)
+.++.... ..+++|++|++++|.-....|..+..+++|+++++++|.-
T Consensus 486 ~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 486 EQISWGVF-DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CEECTTTT-TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred CccChhhh-cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 66654332 3589999999999854444478888899999999998766
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4.5e-27 Score=266.98 Aligned_cols=476 Identities=15% Similarity=0.122 Sum_probs=250.0
Q ss_pred ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689 2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80 (595)
Q Consensus 2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 80 (595)
+.|+|.+|.+ .+.+..|+.+++|++|+++++.....+.+.. .+.+++|++|+|++| .++.+.+. .+..+++|
T Consensus 27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~~p~-----~~~~l~~L 99 (844)
T 3j0a_A 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFLHPD-----AFQGLFHL 99 (844)
T ss_dssp CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEECTT-----SSCSCSSC
T ss_pred CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCcccCHh-----HccCCccc
Confidence 5788888876 3447778889999999999997655553322 388999999999998 68777554 57789999
Q ss_pred cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccc
Q 036689 81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQ 160 (595)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 160 (595)
++|+++++ .+.........+..+++|++|++++| .++..++...++++++|++|++++|. +..+.. ..
T Consensus 100 ~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~---------~~ 167 (844)
T 3j0a_A 100 FELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE---------HE 167 (844)
T ss_dssp CCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCS---------GG
T ss_pred CEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc-CCeeCH---------HH
Confidence 99999996 56542222223678999999999995 56666554678899999999999854 332211 11
Q ss_pred cccc--cccceEecCCCCCccccccccc-------ccccccccccccc--Cccc-cccccccCC-C-c------------
Q 036689 161 KIEF--GQLSTLCLGSLPELTSFCCEVK-------KNRQAQGMHETCS--NKIS-SLEDKLDIS-S-P------------ 214 (595)
Q Consensus 161 ~~~~--~~L~~L~l~~~~~l~~~~~~~~-------~~~~~~~~~~~~~--~~~~-~~~~~~~~~-~-~------------ 214 (595)
...+ ++|+.|+++++.-....+.... ...+..+....+. +..+ .+....... . .
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 1122 5677777766543222211100 0001111111110 0000 000000000 0 0
Q ss_pred -----------cccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEE
Q 036689 215 -----------LFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHL 283 (595)
Q Consensus 215 -----------~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L 283 (595)
.|.+ ...++|+.|++++|.+..+. +.. +..+++|+.|+++++ .++.+.+. .+..+++|++|
T Consensus 248 ~~~~l~~~~~~~f~~-l~~~~L~~L~Ls~n~l~~~~----~~~-~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L 319 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAG-LARSSVRHLDLSHGFVFSLN----SRV-FETLKDLKVLNLAYN-KINKIADE-AFYGLDNLQVL 319 (844)
T ss_dssp SCSSSTTGGGTTTTT-TTTSCCCEEECTTCCCCEEC----SCC-SSSCCCCCEEEEESC-CCCEECTT-TTTTCSSCCEE
T ss_pred cccccCCCChhhhhc-cccCCccEEECCCCcccccC----hhh-hhcCCCCCEEECCCC-cCCCCChH-HhcCCCCCCEE
Confidence 0000 01246677777766655442 121 245677777777764 44444332 34666777777
Q ss_pred EeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCC
Q 036689 284 EIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCES 363 (595)
Q Consensus 284 ~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~ 363 (595)
++++|. ++.+.+..+.+ +++|+.|+++++ .+..++... ...+++|+.|+++++. ++.+
T Consensus 320 ~Ls~N~-l~~~~~~~~~~--------l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i---------- 377 (844)
T 3j0a_A 320 NLSYNL-LGELYSSNFYG--------LPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDNA-LTTI---------- 377 (844)
T ss_dssp EEESCC-CSCCCSCSCSS--------CTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETCC-SCCC----------
T ss_pred ECCCCC-CCccCHHHhcC--------CCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCCC-CCcc----------
Confidence 777766 55554433322 667777777764 344443321 1225677777776653 2211
Q ss_pred CCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCC-------------------CCcccccCceeEEeeccccc
Q 036689 364 SEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGD-------------------FPQHLFGGLKVLQLKFDASA 424 (595)
Q Consensus 364 ~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~~~L~~L~L~~~~~~ 424 (595)
..+++|+.|++++|+...+.... .....+++|+.|++++
T Consensus 378 ------------------~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~---- 435 (844)
T 3j0a_A 378 ------------------HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ---- 435 (844)
T ss_dssp ------------------SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES----
T ss_pred ------------------cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC----
Confidence 12455555555555433221100 0011334444444422
Q ss_pred cccccCccccccCCC-CccccCCccEEeEeCCCCCccccc----chHHhhcccccEEEEcCcccccchhcccCccccccc
Q 036689 425 AVVSSCDNLLILLPS-SSVSFRNLKILEVSGCKKLTNLVA----SSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREE 499 (595)
Q Consensus 425 l~~~~~~~l~~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~----~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~ 499 (595)
+.+...++. ....+++|+.|++++ +.++.... ...++.+++|++|++++|. ++.++.....
T Consensus 436 ------N~l~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~------ 501 (844)
T 3j0a_A 436 ------NRFSSCSGDQTPSENPSLEQLFLGE-NMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFS------ 501 (844)
T ss_dssp ------CCCCCCCSSSSSCSCTTCCBCEEES-CCCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCTTSSS------
T ss_pred ------CcccccccccccccCCccccccCCC-CccccccccccchhhhcCcccccEEECCCCc-ccccChhHcc------
Confidence 222222111 122345555555555 23321110 1123445555555555553 4444433222
Q ss_pred cccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCCccccCc
Q 036689 500 IVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGD 571 (595)
Q Consensus 500 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~~~~~~~ 571 (595)
.+++|+.|+++++ .++.++.+.. .++|+.|+++++ +++.++... +++|+.+++.+|. |.|+.+
T Consensus 502 -~l~~L~~L~Ls~N-~l~~l~~~~~---~~~L~~L~Ls~N-~l~~~~~~~--~~~L~~l~l~~Np-~~C~c~ 564 (844)
T 3j0a_A 502 -HLTALRGLSLNSN-RLTVLSHNDL---PANLEILDISRN-QLLAPNPDV--FVSLSVLDITHNK-FICECE 564 (844)
T ss_dssp -SCCSCSEEEEESC-CCSSCCCCCC---CSCCCEEEEEEE-CCCCCCSCC--CSSCCEEEEEEEC-CCCSSS
T ss_pred -chhhhheeECCCC-CCCccChhhh---hccccEEECCCC-cCCCCChhH--hCCcCEEEecCCC-cccccc
Confidence 3566666666663 5665554442 256666666665 344443322 4567777777543 444433
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.1e-26 Score=256.14 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=95.2
Q ss_pred ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689 2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80 (595)
Q Consensus 2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 80 (595)
+.|+|..|.+ .+.++.++.+++|++|+++++.. ..+++. ..+.+++|++|++++| .++.+++. .+..+++|
T Consensus 52 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l~~L 123 (680)
T 1ziw_A 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDK-TFAFCTNLTELHLMSN-SIQKIKNN-----PFVKQKNL 123 (680)
T ss_dssp SEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTT-TTTTCTTCSEEECCSS-CCCCCCSC-----TTTTCTTC
T ss_pred cEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChh-hhccCCCCCEEECCCC-ccCccChh-----HccccCCC
Confidence 5677777765 34477777899999999999876 344442 1278999999999998 67766443 56788999
Q ss_pred cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh--hcCCCCcEEEEcccC
Q 036689 81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA--KCLPRLERIAVINCR 142 (595)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~--~~l~~L~~L~l~~c~ 142 (595)
++|+++++ .+.... +..++.+++|++|++++| .++..++ ..+ ..+++|++|++++|.
T Consensus 124 ~~L~Ls~n-~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 124 ITLDLSHN-GLSSTK--LGTQVQLENLQELLLSNN-KIQALKS-EELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CEEECCSS-CCSCCC--CCSSSCCTTCCEEECCSS-CCCCBCH-HHHGGGTTCEESEEECTTCC
T ss_pred CEEECCCC-cccccC--chhhcccccCCEEEccCC-cccccCH-HHhhccccccccEEECCCCc
Confidence 99999996 565542 223678999999999995 5676654 333 356899999999864
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=8.4e-27 Score=253.85 Aligned_cols=462 Identities=16% Similarity=0.151 Sum_probs=275.1
Q ss_pred ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689 2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80 (595)
Q Consensus 2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 80 (595)
+.|+|+.|.+ .+.+..|+.+++|++|++++|.. ..+++.. .+++++|++|+++++ .++.+++. .+..+++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l~~L 102 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGA-YQSLSHLSTLILTGN-PIQSLALG-----AFSGLSSL 102 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC-CEECTTT-TTTCTTCCEEECTTC-CCCEECTT-----TTTTCTTC
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcC-CccCccc-ccCchhCCEEeCcCC-cCCccCHh-----hhcCcccc
Confidence 4566666654 23355566777788888877755 3333221 267778888888777 56666443 45667778
Q ss_pred cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccc
Q 036689 81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQ 160 (595)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 160 (595)
++|+++++ .++.+... +++.+++|++|++++| .++.+..+..++++++|++|++++|. +..++.. .
T Consensus 103 ~~L~L~~n-~l~~l~~~--~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~---------~ 168 (570)
T 2z63_A 103 QKLVAVET-NLASLENF--PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT---------D 168 (570)
T ss_dssp CEEECTTS-CCCCSTTC--SCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGG---------G
T ss_pred cccccccc-ccccCCCc--cccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHH---------H
Confidence 88888775 56555322 3667778888888874 45543222567777888888887743 3333211 1
Q ss_pred ccccccc----ceEecCCCCCcccccccc-cccccccccccccc--------------Cc---------cccccccccCC
Q 036689 161 KIEFGQL----STLCLGSLPELTSFCCEV-KKNRQAQGMHETCS--------------NK---------ISSLEDKLDIS 212 (595)
Q Consensus 161 ~~~~~~L----~~L~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~--------------~~---------~~~~~~~~~~~ 212 (595)
...+.+| +.|+++++. +..+..+. ....+..+....+. +. ...........
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred ccchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 1223333 344444332 11111100 00001111000000 00 00000000111
Q ss_pred CccccccccCCccceeecccc-cceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeeccccc
Q 036689 213 SPLFNEKVALSNLEVLEMNKV-NIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGL 291 (595)
Q Consensus 213 ~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 291 (595)
...+.....+ .++.+++.++ .+... .|..+ ..+++|+.|+++++ .++.++. .+..+ +|++|++++|. +
T Consensus 248 ~~~~~~l~~l-~l~~l~l~~~~~~~~~----~~~~~-~~l~~L~~L~l~~~-~l~~l~~--~~~~~-~L~~L~l~~n~-~ 316 (570)
T 2z63_A 248 KSALEGLCNL-TIEEFRLAYLDYYLDD----IIDLF-NCLTNVSSFSLVSV-TIERVKD--FSYNF-GWQHLELVNCK-F 316 (570)
T ss_dssp TTTTGGGGGS-EEEEEEEEETTEEESC----STTTT-GGGTTCSEEEEESC-EECSCCB--CCSCC-CCSEEEEESCB-C
T ss_pred hhhhcccccc-chhhhhhhcchhhhhh----chhhh-cCcCcccEEEecCc-cchhhhh--hhccC-CccEEeeccCc-c
Confidence 1111111111 2344444444 32222 23333 56788999999876 4555433 24566 88999998887 6
Q ss_pred ceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccc--cccccccccCCCCCCCC
Q 036689 292 QEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTV--FDSELFSFCESSEEDKP 369 (595)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~~~~~~~~ 369 (595)
..++.. .+++|++|++.++......+. ..+++|+.|+++++..-.. .+.
T Consensus 317 ~~l~~~-----------~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~-------------- 367 (570)
T 2z63_A 317 GQFPTL-----------KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQ-------------- 367 (570)
T ss_dssp SSCCBC-----------BCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEH--------------
T ss_pred cccCcc-----------cccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccccccc--------------
Confidence 655441 288899999988764433332 3388999999988753221 122
Q ss_pred CCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCC-CCccccCCcc
Q 036689 370 DIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLP-SSSVSFRNLK 448 (595)
Q Consensus 370 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~-~~~~~l~~L~ 448 (595)
.+..+++|++|++++|...++... ...+++|+.|++.+ +.+....+ ..+..+++|+
T Consensus 368 ----------~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~----------n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 368 ----------SDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQH----------SNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp ----------HHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTT----------SEEESCTTSCTTTTCTTCC
T ss_pred ----------cccccCccCEEECCCCcccccccc---ccccCCCCEEEccC----------CccccccchhhhhcCCCCC
Confidence 135689999999999986654332 44678899999943 44555443 4567899999
Q ss_pred EEeEeCCCCCcccccchHHhhcccccEEEEcCccccc--chhcccCccccccccccccccceecccccccccc-ccCccc
Q 036689 449 ILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMT--QVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSF-CSGNYI 525 (595)
Q Consensus 449 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~ 525 (595)
.|++++| .+....+ ..+..+++|++|++++|. +. .++.... .+++|+.|++++| .++.+ +...
T Consensus 425 ~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~--------~l~~L~~L~l~~n-~l~~~~~~~~-- 490 (570)
T 2z63_A 425 YLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNS-FQENFLPDIFT--------ELRNLTFLDLSQC-QLEQLSPTAF-- 490 (570)
T ss_dssp EEECTTS-CCEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCT--------TCTTCCEEECTTS-CCCEECTTTT--
T ss_pred EEeCcCC-cccccch-hhhhcCCcCcEEECcCCc-Cccccchhhhh--------cccCCCEEECCCC-ccccCChhhh--
Confidence 9999996 4555433 445789999999999997 43 3443333 3899999999997 56666 4333
Q ss_pred ccCCCccEEEEeCCCCccccCC-CCCCCCCcceEEeccCC
Q 036689 526 FKFPSLEVLFVVGCPKMNIFTT-GELSTPPRVDVMYRNRG 564 (595)
Q Consensus 526 ~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~i~~~~ 564 (595)
..+++|++|++++| +++.+|. .+.++++|+++++++|.
T Consensus 491 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 491 NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 35899999999998 6777764 56789999999998754
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=251.17 Aligned_cols=444 Identities=13% Similarity=0.077 Sum_probs=281.1
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
..+++++|+++++.........+ .++++|++|++++| .++.+.+. .+..+++|++|+++++ .++.+.. .
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n-~i~~i~~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~ 94 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRC-EIQTIEDG-----AYQSLSHLSTLILTGN-PIQSLAL--G 94 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTT--TTCSSCCEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCEECT--T
T ss_pred ccccccEEEccCCccCccChhHh--hCCCCceEEECCCC-cCCccCcc-----cccCchhCCEEeCcCC-cCCccCH--h
Confidence 34689999999998743222234 78999999999999 78887554 5678999999999996 6766532 3
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcc-eeecccCcccccccccccccccceEecCCCCCc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQ-EIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPEL 178 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 178 (595)
.++.+++|++|+++++ .++.++. ..++++++|++|++++|.... .+| .....+++|++|+++++.-
T Consensus 95 ~~~~l~~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp----------~~~~~l~~L~~L~l~~n~l- 161 (570)
T 2z63_A 95 AFSGLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNLIQSFKLP----------EYFSNLTNLEHLDLSSNKI- 161 (570)
T ss_dssp TTTTCTTCCEEECTTS-CCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCC----------GGGGGCTTCCEEECTTSCC-
T ss_pred hhcCcccccccccccc-ccccCCC-ccccccccccEEecCCCccceecCh----------hhhcccCCCCEEeCcCCcc-
Confidence 4788999999999995 6777654 347899999999999964322 123 2345689999999988642
Q ss_pred cccccc-c-ccccc----cccccccccCccccccccccCCCccccccccCCccceeecccccce--ee------------
Q 036689 179 TSFCCE-V-KKNRQ----AQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIE--KI------------ 238 (595)
Q Consensus 179 ~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~------------ 238 (595)
..++.. . ....+ ..+....+. ........|. ..+|+.|+++++... .+
T Consensus 162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~--------l~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~ 229 (570)
T 2z63_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNP--------MNFIQPGAFK----EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229 (570)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCC--------CCEECTTTTT----TCEEEEEEEESCCSCTTHHHHHHHTTTTCEE
T ss_pred ceecHHHccchhccchhhhhcccCCCC--------ceecCHHHhc----cCcceeEecccccccccchhhhhcCccccce
Confidence 222211 0 00000 000000000 0000011111 224666665554100 00
Q ss_pred ---cc---------cCCCccccccCC--CccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCC
Q 036689 239 ---WH---------NQLPVAMFLCFQ--NLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQV 304 (595)
Q Consensus 239 ---~~---------~~~~~~~~~~l~--~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 304 (595)
+. ..++...+..++ .++.+++.++..+....+ ..+..+++|++|+++++. ++.++.. ..
T Consensus 230 ~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-l~~l~~~-~~---- 302 (570)
T 2z63_A 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVT-IERVKDF-SY---- 302 (570)
T ss_dssp EEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCE-ECSCCBC-CS----
T ss_pred eeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCcc-chhhhhh-hc----
Confidence 00 000100001111 234444444433333222 235677888888888887 6665441 11
Q ss_pred CCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccC
Q 036689 305 PPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVF 384 (595)
Q Consensus 305 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 384 (595)
.+ +|++|++.++. +..++.. .+++|+.|.+.++.....++. ..+
T Consensus 303 ----~~-~L~~L~l~~n~-~~~l~~~----~l~~L~~L~l~~n~~~~~~~~--------------------------~~~ 346 (570)
T 2z63_A 303 ----NF-GWQHLELVNCK-FGQFPTL----KLKSLKRLTFTSNKGGNAFSE--------------------------VDL 346 (570)
T ss_dssp ----CC-CCSEEEEESCB-CSSCCBC----BCSSCCEEEEESCBSCCBCCC--------------------------CBC
T ss_pred ----cC-CccEEeeccCc-ccccCcc----cccccCEEeCcCCcccccccc--------------------------ccC
Confidence 15 88888888865 4444432 378888888888764433332 578
Q ss_pred CCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccc
Q 036689 385 PNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVAS 464 (595)
Q Consensus 385 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 464 (595)
++|++|++++|..............+++|+.|++.+ +.+..+++ .+..+++|+.|+++++ .+...++.
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~----------n~l~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~ 414 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF----------NGVITMSS-NFLGLEQLEHLDFQHS-NLKQMSEF 414 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS----------CSEEEEEE-EEETCTTCCEEECTTS-EEESCTTS
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCC----------Cccccccc-cccccCCCCEEEccCC-ccccccch
Confidence 999999999997654311011233568899999953 44666555 3778999999999995 45555444
Q ss_pred hHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccc-cccccCcccccCCCccEEEEeCCCCcc
Q 036689 465 SAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSL-TSFCSGNYIFKFPSLEVLFVVGCPKMN 543 (595)
Q Consensus 465 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~~~~~~L~~L~l~~C~~l~ 543 (595)
..+..+++|++|++++|. +......... .+++|+.|++.+|.-. ..+|... ..+++|++|++++|. ++
T Consensus 415 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~-l~ 483 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTH-TRVAFNGIFN-------GLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQ-LE 483 (570)
T ss_dssp CTTTTCTTCCEEECTTSC-CEECCTTTTT-------TCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSC-CC
T ss_pred hhhhcCCCCCEEeCcCCc-ccccchhhhh-------cCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCc-cc
Confidence 456789999999999997 5554333222 4899999999997533 2466544 358999999999985 55
Q ss_pred cc-CCCCCCCCCcceEEeccCCC
Q 036689 544 IF-TTGELSTPPRVDVMYRNRGA 565 (595)
Q Consensus 544 ~l-p~~~~~~~~L~~l~i~~~~~ 565 (595)
.+ |..+..+++|+++++++|.-
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSSCC
T ss_pred cCChhhhhcccCCCEEeCCCCcC
Confidence 55 77888899999999997754
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.2e-26 Score=252.94 Aligned_cols=437 Identities=14% Similarity=0.096 Sum_probs=281.9
Q ss_pred cccc--ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceE---ecCCCCC--------------------
Q 036689 16 KKLQ--GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMC---IVDSKER-------------------- 70 (595)
Q Consensus 16 ~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~---i~~~~~~-------------------- 70 (595)
.|+. .-.+++.|+|.++...+.+++.+ +.+++|++|+|++|. +.. .+.....
T Consensus 73 ~GV~C~~~~~V~~L~L~~~~l~g~lp~~l--~~L~~L~~L~Ls~N~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~ 149 (636)
T 4eco_A 73 PGVSLNSNGRVTGLSLEGFGASGRVPDAI--GQLTELEVLALGSHG-EKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149 (636)
T ss_dssp TTEEECTTCCEEEEECTTSCCEEEECGGG--GGCTTCCEEESCCGG-GGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHH
T ss_pred CCeEEcCCCCEEEEEecCcccCCcCChHH--hcCccceEEECcCCc-cccCCccccccccccCchHHHHHHHHhhHHHhh
Confidence 5565 12479999999998877777766 899999999998883 210 0000000
Q ss_pred ---------C---------------CcCCcCCCccEEeccC-ccCccccccccccccCCCCccEEEecCCCCccc-----
Q 036689 71 ---------V---------------PLDDAFPILESLNLYN-LIKLERICQDRLSVQSFNELKTIRVELCDQLSN----- 120 (595)
Q Consensus 71 ---------~---------------~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~----- 120 (595)
. ........++.+.+.. +.+++.+ |..++.+++|++|+++++ .++.
T Consensus 150 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i---p~~l~~l~~L~~L~Ls~n-~l~~~~~~~ 225 (636)
T 4eco_A 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV---SKAVMRLTKLRQFYMGNS-PFVAENICE 225 (636)
T ss_dssp TCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE---CGGGGGCTTCCEEEEESC-CCCGGGBSS
T ss_pred hccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccC---CHHHhcccCCCEEECcCC-ccccccccc
Confidence 0 0000111222222222 2344444 344788899999999985 4776
Q ss_pred -------------ccchhhhh--cCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc--ccc
Q 036689 121 -------------IFLLSAAK--CLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS--FCC 183 (595)
Q Consensus 121 -------------~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~ 183 (595)
+| ..+. ++++|++|++++|.....+|. .+..+++|+.|+++++..+.. ++.
T Consensus 226 ~~~~~~~~~~~~~ip--~~l~~~~l~~L~~L~L~~n~l~~~~p~----------~l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 226 AWENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLTKLPT----------FLKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp SCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEECCTTCSSCCT----------TTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred cccccccchhcccCc--hhhhhcccCCCCEEEecCCcCCccChH----------HHhcCCCCCEEECcCCCCCccccchH
Confidence 44 5566 889999999998876666652 345678899999888764442 332
Q ss_pred ccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCc--cccccCCCccEEEEec
Q 036689 184 EVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPV--AMFLCFQNLTRLILRK 261 (595)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~--~~~~~l~~L~~L~L~~ 261 (595)
... -+.....+++|++|++++|+++.+ |. .+ ..+++|+.|++++
T Consensus 294 ~~~----------------------------~L~~~~~l~~L~~L~L~~n~l~~i-----p~~~~l-~~l~~L~~L~L~~ 339 (636)
T 4eco_A 294 DWQ----------------------------ALADAPVGEKIQIIYIGYNNLKTF-----PVETSL-QKMKKLGMLECLY 339 (636)
T ss_dssp HHH----------------------------HHHHSGGGGTCCEEECCSSCCSSC-----CCHHHH-TTCTTCCEEECCS
T ss_pred HHH----------------------------hhhccccCCCCCEEECCCCcCCcc-----Cchhhh-ccCCCCCEEeCcC
Confidence 110 000012347899999998877755 66 44 6788999999987
Q ss_pred CCCCc-cccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCc-ccEEeecCCCCcccccCCCccccCccc
Q 036689 262 CPKLK-YIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQ-VTILRLVGLPELKCLYPGMHTSEWPAL 339 (595)
Q Consensus 262 c~~l~-~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~l~~~~~~~~~~~~~~L 339 (595)
+ .++ .++ .++.+++|++|++++|. ++.++. ... .+++ |++|+++++. +..++.......+++|
T Consensus 340 N-~l~g~ip---~~~~l~~L~~L~L~~N~-l~~lp~-~l~--------~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 340 N-QLEGKLP---AFGSEIKLASLNLAYNQ-ITEIPA-NFC--------GFTEQVENLSFAHNK-LKYIPNIFDAKSVSVM 404 (636)
T ss_dssp C-CCEEECC---CCEEEEEESEEECCSSE-EEECCT-TSE--------EECTTCCEEECCSSC-CSSCCSCCCTTCSSCE
T ss_pred C-cCccchh---hhCCCCCCCEEECCCCc-cccccH-hhh--------hhcccCcEEEccCCc-CcccchhhhhcccCcc
Confidence 6 455 543 35788899999999887 776654 222 2777 9999998865 5566554333335588
Q ss_pred ceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEee
Q 036689 340 KLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLK 419 (595)
Q Consensus 340 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~ 419 (595)
+.|+++++......|..++.. ....-.+++|++|++++|....+... ....+++|+.|+++
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~-----------------~~~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPL-----------------DPTPFKGINVSSINLSNNQISKFPKE--LFSTGSPLSSINLM 465 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTT-----------------CSSCCCCCCEEEEECCSSCCCSCCTH--HHHTTCCCSEEECC
T ss_pred CEEECcCCcCCCcchhhhccc-----------------ccccccCCCCCEEECcCCccCcCCHH--HHccCCCCCEEECC
Confidence 999998886555444411100 00001456889999998875532110 11246788888884
Q ss_pred ccccccccccCccccccCCCCcccc-------CCccEEeEeCCCCCcccccchHH-hhcccccEEEEcCcccccchhccc
Q 036689 420 FDASAAVVSSCDNLLILLPSSSVSF-------RNLKILEVSGCKKLTNLVASSAA-QSLVALVKMQVFGCRAMTQVVKSE 491 (595)
Q Consensus 420 ~~~~~l~~~~~~~l~~~~~~~~~~l-------~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~c~~l~~i~~~~ 491 (595)
.+.+..++...+... ++|+.|++++ +.++.++ ..+. ..+++|++|++++|. ++.++...
T Consensus 466 ----------~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp-~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~ 532 (636)
T 4eco_A 466 ----------GNMLTEIPKNSLKDENENFKNTYLLTSIDLRF-NKLTKLS-DDFRATTLPYLVGIDLSYNS-FSKFPTQP 532 (636)
T ss_dssp ----------SSCCSBCCSSSSEETTEECTTGGGCCEEECCS-SCCCBCC-GGGSTTTCTTCCEEECCSSC-CSSCCCGG
T ss_pred ----------CCCCCCcCHHHhccccccccccCCccEEECcC-CcCCccC-hhhhhccCCCcCEEECCCCC-CCCcChhh
Confidence 355665555433332 3899999998 4677663 3332 488999999999987 66666544
Q ss_pred Cccccccccccccccceeccc------cccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCC
Q 036689 492 GNQLAREEIVFNKLKMLSLLD------LDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGA 565 (595)
Q Consensus 492 ~~~~~~~~~~l~~L~~L~l~~------~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~ 565 (595)
.. +++|+.|++++ +.-...+|.... .+++|++|++++|. ++.+|..+. ++|+++++++|..
T Consensus 533 ~~--------l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 533 LN--------SSTLKGFGIRNQRDAQGNRTLREWPEGIT--LCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp GG--------CSSCCEEECCSCBCTTCCBCCCCCCTTGG--GCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTT
T ss_pred hc--------CCCCCEEECCCCcccccCcccccChHHHh--cCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCC
Confidence 44 88999999954 333456665553 48999999999984 588888765 8999999998765
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.5e-26 Score=250.70 Aligned_cols=455 Identities=14% Similarity=0.094 Sum_probs=264.3
Q ss_pred cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
.++|++|+++++......+..+ +++++|++|++++| .++.+.+. .+..+++|++|+++++ .+..+.. ..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~~--~~ 93 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSS-RINTIEGD-----AFYSLGSLEHLDLSDN-HLSSLSS--SW 93 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTT--SSCTTCCEEECTTS-CCCEECTT-----TTTTCTTCCEEECTTS-CCCSCCH--HH
T ss_pred CCCccEEECcCCccCccChhhh--hcCCcccEEECCCC-CcCccChh-----hccccccCCEEECCCC-ccCccCH--HH
Confidence 4688999998887633222234 78899999999888 67777544 5667888999999986 6665522 22
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 180 (595)
++.+++|++|++++| .++.+.....++++++|++|++++|..+..++.. ....+++|++|+++++.--..
T Consensus 94 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---------~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 94 FGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---------DFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp HTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---------TTTTCCEEEEEEEEETTCCEE
T ss_pred hccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHh---------hhhcccccCeeeccCCccccc
Confidence 678889999999885 5664433356778889999999887766665421 234567788888876543222
Q ss_pred ccccc-ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 181 FCCEV-KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 181 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
.+... ....+..+....+... ..+... ...+++|++|++++|+++.......+ +...+++|+.|++
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~--------~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~L~~L~l 230 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESA--------FLLEIF---ADILSSVRYLELRDTNLARFQFSPLP--VDEVSSPMKKLAF 230 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBST--------THHHHH---HHSTTTBSEEEEESCBCTTCCCCCCS--SCCCCCCCCEEEE
T ss_pred ChhhhhccccCceEecccCccc--------ccchhh---HhhcccccEEEccCCccccccccccc--hhhhhhcccceec
Confidence 22111 0111111111111000 000000 11367888888888866554211111 1134677888888
Q ss_pred ecCCCCccccchh---hhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC--------------
Q 036689 260 RKCPKLKYIFSAS---MLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP-------------- 322 (595)
Q Consensus 260 ~~c~~l~~l~~~~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-------------- 322 (595)
+++ .+++..+.. .+..+++|+.+++++|. +..+....... ......+++|+.|.+.++.
T Consensus 231 ~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 231 RGS-VLTDESFNELLKLLRYILELSEVEFDDCT-LNGLGDFNPSE--SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp ESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCE-EECCSCCCCCT--TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred ccc-ccchhHHHHHHHHhhhhcccccccccccc-ccccccccccc--hhhhhhhcccccccccccccchhhhcccchhhh
Confidence 765 333321111 23556778888888876 44432111000 0011124555555555432
Q ss_pred --------------CcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcc
Q 036689 323 --------------ELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLE 388 (595)
Q Consensus 323 --------------~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 388 (595)
.+..++... ...+++|+.|+++++.....+|.. ....+.+++|+
T Consensus 307 ~~~~~L~~L~l~~n~l~~ip~~~-~~~l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~~l~~L~ 364 (549)
T 2z81_A 307 SLLEKVKRITVENSKVFLVPCSF-SQHLKSLEFLDLSENLMVEEYLKN---------------------SACKGAWPSLQ 364 (549)
T ss_dssp HHSTTCCEEEEESSCCCCCCHHH-HHHCTTCCEEECCSSCCCHHHHHH---------------------HTCTTSSTTCC
T ss_pred hhcccceEEEeccCccccCCHHH-HhcCccccEEEccCCccccccccc---------------------hhhhhccccCc
Confidence 122222110 011445555555554432222210 01134567777
Q ss_pred eEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHh
Q 036689 389 ELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQ 468 (595)
Q Consensus 389 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 468 (595)
+|++++|....+.........+++|+.|++++ +.+..++. .+..+++|+.|+++++ .++.++. .+
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~----------N~l~~lp~-~~~~~~~L~~L~Ls~N-~l~~l~~-~~-- 429 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISR----------NTFHPMPD-SCQWPEKMRFLNLSST-GIRVVKT-CI-- 429 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTT----------CCCCCCCS-CCCCCTTCCEEECTTS-CCSCCCT-TS--
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCC----------CCCccCCh-hhcccccccEEECCCC-Ccccccc-hh--
Confidence 78877776543211001133567777777743 45555544 5666788888888884 4665532 11
Q ss_pred hcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCC-
Q 036689 469 SLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTT- 547 (595)
Q Consensus 469 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~- 547 (595)
.++|++|++++|. +++++ . .+++|+.|+++++ .++.+|... .+++|++|++++| +++.+|.
T Consensus 430 -~~~L~~L~Ls~N~-l~~~~---~--------~l~~L~~L~Ls~N-~l~~ip~~~---~l~~L~~L~Ls~N-~l~~~~~~ 491 (549)
T 2z81_A 430 -PQTLEVLDVSNNN-LDSFS---L--------FLPRLQELYISRN-KLKTLPDAS---LFPVLLVMKISRN-QLKSVPDG 491 (549)
T ss_dssp -CTTCSEEECCSSC-CSCCC---C--------CCTTCCEEECCSS-CCSSCCCGG---GCTTCCEEECCSS-CCCCCCTT
T ss_pred -cCCceEEECCCCC-hhhhc---c--------cCChhcEEECCCC-ccCcCCCcc---cCccCCEEecCCC-ccCCcCHH
Confidence 2578888888885 55543 1 3899999999996 788888642 4899999999997 6777765
Q ss_pred CCCCCCCcceEEeccCCCcccc
Q 036689 548 GELSTPPRVDVMYRNRGAPCWD 569 (595)
Q Consensus 548 ~~~~~~~L~~l~i~~~~~~~~~ 569 (595)
.+.++++|+++++++|. |.++
T Consensus 492 ~~~~l~~L~~L~l~~N~-~~~~ 512 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNP-WDCS 512 (549)
T ss_dssp GGGGCTTCCEEECCSSC-BCCC
T ss_pred HHhcCcccCEEEecCCC-ccCC
Confidence 47789999999998754 4333
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.5e-25 Score=250.84 Aligned_cols=434 Identities=15% Similarity=0.091 Sum_probs=271.6
Q ss_pred cccc-c-cccccEEEeccCCCCccccccccccccCCCcEEEc-ccCCCceEecCCC--CC--------------------
Q 036689 16 KKLQ-G-IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHV-QNNPDFMCIVDSK--ER-------------------- 70 (595)
Q Consensus 16 ~~~~-~-l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L-~~~~~l~~i~~~~--~~-------------------- 70 (595)
.|+. . -.++..|+|.+++..+.+++.+ +.+++|++|+| +++ .+....+-. ..
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l--~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~ 391 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAI--GQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGG--GGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHH--hccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhh
Confidence 4554 1 2579999999998877777777 89999999999 554 332110000 00
Q ss_pred ------------------------CCcCCcCCCccEEeccC-ccCccccccccccccCCCCccEEEecCCCCccc-----
Q 036689 71 ------------------------VPLDDAFPILESLNLYN-LIKLERICQDRLSVQSFNELKTIRVELCDQLSN----- 120 (595)
Q Consensus 71 ------------------------~~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~----- 120 (595)
.........++.+.+.. .++++.+ |..++.+++|++|+|+++ .++.
T Consensus 392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~I---P~~l~~L~~L~~L~Ls~N-~Lsg~~i~~ 467 (876)
T 4ecn_A 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI---SKAIQRLTKLQIIYFANS-PFTYDNIAV 467 (876)
T ss_dssp TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE---CGGGGGCTTCCEEEEESC-CCCGGGBSS
T ss_pred hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccch---hHHHhcCCCCCEEECcCC-cCCCCcccc
Confidence 00001112233333332 1234444 344788888899999885 5666
Q ss_pred -------------ccchhhhh--cCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc--ccc
Q 036689 121 -------------IFLLSAAK--CLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS--FCC 183 (595)
Q Consensus 121 -------------~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~ 183 (595)
+| ..++ ++++|++|++++|.....+|. .+..+++|+.|+++++..+.. ++.
T Consensus 468 ~~~~~s~n~~~g~iP--~~l~f~~L~~L~~L~Ls~N~l~~~iP~----------~l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 468 DWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPNMTQLPD----------FLYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp SCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEESCTTCCSCCG----------GGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred cccccccccccccCC--hhhhhccCCCCCEEECcCCCCCccChH----------HHhCCCCCCEEECcCCCCcccccchH
Confidence 44 4444 888899999888776666652 345678888888888764442 332
Q ss_pred ccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCc--cccccCCCccEEEEec
Q 036689 184 EVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPV--AMFLCFQNLTRLILRK 261 (595)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~--~~~~~l~~L~~L~L~~ 261 (595)
.... +......+++|+.|++++|.++.+ |. .+ ..+++|+.|++++
T Consensus 536 ~i~~---------------------------L~~~~~~l~~L~~L~Ls~N~L~~i-----p~~~~l-~~L~~L~~L~Ls~ 582 (876)
T 4ecn_A 536 DWTR---------------------------LADDEDTGPKIQIFYMGYNNLEEF-----PASASL-QKMVKLGLLDCVH 582 (876)
T ss_dssp HHHH---------------------------HHHCTTTTTTCCEEECCSSCCCBC-----CCHHHH-TTCTTCCEEECTT
T ss_pred HHHh---------------------------hhhcccccCCccEEEeeCCcCCcc-----CChhhh-hcCCCCCEEECCC
Confidence 1100 000112466888888888877755 66 44 6788888888887
Q ss_pred CCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCc-ccEEeecCCCCcccccCCCccccCcccc
Q 036689 262 CPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQ-VTILRLVGLPELKCLYPGMHTSEWPALK 340 (595)
Q Consensus 262 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~l~~~~~~~~~~~~~~L~ 340 (595)
+ .++.++ .++.+++|++|++++|. ++.++. ... .+++ |+.|+++++. +..++........++|+
T Consensus 583 N-~l~~lp---~~~~L~~L~~L~Ls~N~-l~~lp~-~l~--------~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 583 N-KVRHLE---AFGTNVKLTDLKLDYNQ-IEEIPE-DFC--------AFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMG 647 (876)
T ss_dssp S-CCCBCC---CCCTTSEESEEECCSSC-CSCCCT-TSC--------EECTTCCEEECCSSC-CCSCCSCCCTTCSSCEE
T ss_pred C-Ccccch---hhcCCCcceEEECcCCc-cccchH-HHh--------hccccCCEEECcCCC-CCcCchhhhccccCCCC
Confidence 5 455544 35788888888888887 665543 222 2677 8888888865 55555433332235588
Q ss_pred eeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc--cCCCcceEeccCCCCeeccCCCCCcccccCceeEEe
Q 036689 341 LLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK--VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQL 418 (595)
Q Consensus 341 ~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L 418 (595)
.|++++|.....+|.. + .... .+++|++|++++|....+... ....+++|+.|++
T Consensus 648 ~L~Ls~N~l~g~ip~l-~--------------------~~l~~~~~~~L~~L~Ls~N~L~~lp~~--~~~~l~~L~~L~L 704 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNI-S--------------------CSMDDYKGINASTVTLSYNEIQKFPTE--LFATGSPISTIIL 704 (876)
T ss_dssp EEECCSSCTTTTSSSC-S--------------------SCTTTCCCCCEEEEECCSSCCCSCCHH--HHHTTCCCSEEEC
T ss_pred EEECcCCcCCCccccc-h--------------------hhhccccCCCcCEEEccCCcCCccCHH--HHccCCCCCEEEC
Confidence 8888887644333320 0 0011 345788888888875532110 0124577888888
Q ss_pred eccccccccccCccccccCCCCcc-------ccCCccEEeEeCCCCCcccccchHH-hhcccccEEEEcCcccccchhcc
Q 036689 419 KFDASAAVVSSCDNLLILLPSSSV-------SFRNLKILEVSGCKKLTNLVASSAA-QSLVALVKMQVFGCRAMTQVVKS 490 (595)
Q Consensus 419 ~~~~~~l~~~~~~~l~~~~~~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~c~~l~~i~~~ 490 (595)
++ +.+..++...+. .+++|+.|++++| .++.++ ..+. ..+++|+.|++++|. ++.++..
T Consensus 705 s~----------N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp-~~l~~~~l~~L~~L~Ls~N~-L~~lp~~ 771 (876)
T 4ecn_A 705 SN----------NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS-DDFRATTLPYLSNMDVSYNC-FSSFPTQ 771 (876)
T ss_dssp CS----------CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCC-GGGSTTTCTTCCEEECCSSC-CSSCCCG
T ss_pred CC----------CcCCccChHHhccccccccccCCccEEECCCC-CCccch-HHhhhccCCCcCEEEeCCCC-CCccchh
Confidence 43 455555543332 2348999999985 666653 3332 378899999998886 6666554
Q ss_pred cCccccccccccccccceeccc------cccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCC
Q 036689 491 EGNQLAREEIVFNKLKMLSLLD------LDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRG 564 (595)
Q Consensus 491 ~~~~~~~~~~~l~~L~~L~l~~------~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~ 564 (595)
... +++|+.|++++ +.-...+|... ..+++|+.|++++|. ++.+|..+. ++|+.|++++|.
T Consensus 772 l~~--------L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 772 PLN--------SSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp GGG--------CTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCT
T ss_pred hhc--------CCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCC
Confidence 443 88899998876 33344555554 348899999999884 588888754 689999998776
Q ss_pred C
Q 036689 565 A 565 (595)
Q Consensus 565 ~ 565 (595)
.
T Consensus 839 l 839 (876)
T 4ecn_A 839 N 839 (876)
T ss_dssp T
T ss_pred C
Confidence 5
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.2e-26 Score=249.44 Aligned_cols=425 Identities=16% Similarity=0.126 Sum_probs=251.1
Q ss_pred ccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCC
Q 036689 36 KNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELC 115 (595)
Q Consensus 36 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c 115 (595)
..++..+ .++|++|++++| .++.+.+. .+..+++|++|+++++ .+..+.. ..+..+++|++|++++|
T Consensus 18 ~~ip~~~----~~~L~~L~Ls~n-~l~~~~~~-----~~~~l~~L~~L~Ls~n-~i~~~~~--~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 18 TSIPSGL----TAAMKSLDLSFN-KITYIGHG-----DLRACANLQVLILKSS-RINTIEG--DAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SSCCSCC----CTTCCEEECCSS-CCCEECSS-----TTSSCTTCCEEECTTS-CCCEECT--TTTTTCTTCCEEECTTS
T ss_pred ccccccC----CCCccEEECcCC-ccCccChh-----hhhcCCcccEEECCCC-CcCccCh--hhccccccCCEEECCCC
Confidence 4555433 489999999999 68887554 5678999999999996 7776632 34788999999999995
Q ss_pred CCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccccccccccccccccc
Q 036689 116 DQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMH 195 (595)
Q Consensus 116 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 195 (595)
.+++.++ ..++++++|++|++++|. +..+.. ......+++|++|+++++..+..++..
T Consensus 85 -~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~--------~~~~~~l~~L~~L~L~~n~~~~~~~~~----------- 142 (549)
T 2z81_A 85 -HLSSLSS-SWFGPLSSLKYLNLMGNP-YQTLGV--------TSLFPNLTNLQTLRIGNVETFSEIRRI----------- 142 (549)
T ss_dssp -CCCSCCH-HHHTTCTTCCEEECTTCC-CSSSCS--------SCSCTTCTTCCEEEEEESSSCCEECTT-----------
T ss_pred -ccCccCH-HHhccCCCCcEEECCCCc-ccccch--------hhhhhccCCccEEECCCCccccccCHh-----------
Confidence 6777764 568899999999999964 332211 023446889999999987755544321
Q ss_pred ccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhh
Q 036689 196 ETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLG 275 (595)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 275 (595)
....+++|++|++++|.++... |..+ ..+++|++|+++++. ...+ +...++
T Consensus 143 ----------------------~~~~l~~L~~L~L~~n~l~~~~----~~~l-~~l~~L~~L~l~~n~-~~~~-~~~~~~ 193 (549)
T 2z81_A 143 ----------------------DFAGLTSLNELEIKALSLRNYQ----SQSL-KSIRDIHHLTLHLSE-SAFL-LEIFAD 193 (549)
T ss_dssp ----------------------TTTTCCEEEEEEEEETTCCEEC----TTTT-TTCSEEEEEEEECSB-STTH-HHHHHH
T ss_pred ----------------------hhhcccccCeeeccCCcccccC----hhhh-hccccCceEecccCc-cccc-chhhHh
Confidence 1124788899999988776542 3333 567888888888653 3333 333456
Q ss_pred ccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccc-----cCC--------------------
Q 036689 276 SFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCL-----YPG-------------------- 330 (595)
Q Consensus 276 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-----~~~-------------------- 330 (595)
.+++|++|+++++. ++..+..... ....+++|+.|++.++. +... ...
T Consensus 194 ~l~~L~~L~L~~n~-l~~~~~~~~~-----~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~ 266 (549)
T 2z81_A 194 ILSSVRYLELRDTN-LARFQFSPLP-----VDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGL 266 (549)
T ss_dssp STTTBSEEEEESCB-CTTCCCCCCS-----SCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred hcccccEEEccCCc-cccccccccc-----hhhhhhcccceeccccc-cchhHHHHHHHHhhhhcccccccccccccccc
Confidence 68888888888887 6554211000 00114566666665542 1110 000
Q ss_pred --------CccccCcccceeeecCCCCcccccc--ccc-----cccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCC
Q 036689 331 --------MHTSEWPALKLLDVSACDQVTVFDS--ELF-----SFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGK 395 (595)
Q Consensus 331 --------~~~~~~~~L~~L~l~~c~~l~~l~~--~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~ 395 (595)
.....+++|+.|.+.++..-. ... .+. ..+..............+. .+.+.+++|++|++++|
T Consensus 267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~-~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 267 GDFNPSESDVVSELGKVETVTIRRLHIPQ-FYLFYDLSTVYSLLEKVKRITVENSKVFLVPC-SFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp SCCCCCTTTCCCCCTTCCEEEEESCBCSC-GGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH-HHHHHCTTCCEEECCSS
T ss_pred ccccccchhhhhhhcccccccccccccch-hhhcccchhhhhhcccceEEEeccCccccCCH-HHHhcCccccEEEccCC
Confidence 001113334444443331100 000 000 0000000000000000000 11134677777777777
Q ss_pred CCeeccC-CCCCcccccCceeEEeeccccccccccCccccccCC--CCccccCCccEEeEeCCCCCcccccchHHhhccc
Q 036689 396 DIRMIWH-GDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLP--SSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVA 472 (595)
Q Consensus 396 ~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 472 (595)
...+... .......+++|+.|++++ +.+..+++ ..+..+++|+.|++++| .++.++. .++.+++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~----------N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~~ 411 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQ----------NHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD--SCQWPEK 411 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTT----------SCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS--CCCCCTT
T ss_pred ccccccccchhhhhccccCcEEEccC----------CcccccccchhhhhcCCCCCEEECCCC-CCccCCh--hhccccc
Confidence 6554211 011123556777777743 33433321 13455677777777774 5555532 2355677
Q ss_pred ccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCC
Q 036689 473 LVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELST 552 (595)
Q Consensus 473 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~ 552 (595)
|++|++++|. ++.++.. .+++|+.|+++++ .+++++ ..+++|++|++++| +++.+|.. ..+
T Consensus 412 L~~L~Ls~N~-l~~l~~~----------~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N-~l~~ip~~-~~l 472 (549)
T 2z81_A 412 MRFLNLSSTG-IRVVKTC----------IPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRN-KLKTLPDA-SLF 472 (549)
T ss_dssp CCEEECTTSC-CSCCCTT----------SCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSSCCCG-GGC
T ss_pred ccEEECCCCC-cccccch----------hcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCC-ccCcCCCc-ccC
Confidence 7777777775 5544321 1457888888886 566554 24899999999997 78889874 458
Q ss_pred CCcceEEeccCCC
Q 036689 553 PPRVDVMYRNRGA 565 (595)
Q Consensus 553 ~~L~~l~i~~~~~ 565 (595)
++|+++++++|.-
T Consensus 473 ~~L~~L~Ls~N~l 485 (549)
T 2z81_A 473 PVLLVMKISRNQL 485 (549)
T ss_dssp TTCCEEECCSSCC
T ss_pred ccCCEEecCCCcc
Confidence 9999999998755
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=241.52 Aligned_cols=462 Identities=14% Similarity=0.074 Sum_probs=293.2
Q ss_pred ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689 2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 81 (595)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 81 (595)
|.|++..|.++--|..+. ++|++|+++++......+..+ .++++|++|++++| .++.+.+. .+..+++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~-----~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDI--LSLSKLRILIISHN-RIQYLDIS-----VFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHH--TTCTTCCEEECCSS-CCCEEEGG-----GGTTCTTCC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhc--cccccccEEecCCC-ccCCcChH-----HhhcccCCC
Confidence 677888776432244343 899999999998743322334 78999999999999 78877554 567899999
Q ss_pred EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689 82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK 161 (595)
Q Consensus 82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 161 (595)
+|+++++ +++.++.. .+++|++|++++| .++.++.+..++++++|++|++++|.. .. ...
T Consensus 73 ~L~Ls~N-~l~~lp~~-----~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~------------~~~ 132 (520)
T 2z7x_B 73 YLDLSHN-KLVKISCH-----PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHL-EK------------SSV 132 (520)
T ss_dssp EEECCSS-CCCEEECC-----CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSC-CG------------GGG
T ss_pred EEecCCC-ceeecCcc-----ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCccc-ch------------hhc
Confidence 9999996 77766322 7899999999996 566544337788999999999999653 22 122
Q ss_pred cccccc--ceEecCCCCC--ccccccccccc--cccccccccccCccccccccccCCCccccccccCCccceeeccccc-
Q 036689 162 IEFGQL--STLCLGSLPE--LTSFCCEVKKN--RQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVN- 234 (595)
Q Consensus 162 ~~~~~L--~~L~l~~~~~--l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 234 (595)
..+++| +.|+++++.- ....+...... ....+....+. ......-.....+++|+.|++++|.
T Consensus 133 ~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~----------~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK----------EFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS----------CCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred cccccceeeEEEeecccccccccccccccccccceEEEEeccCc----------chhhhhhhhhhcccceeecccccccc
Confidence 335666 8888887653 11111111000 00000000000 0000000112246778888888763
Q ss_pred ------ceeecccCCCccccccCCCccEEEEecCCCCccccchhhh--hccCCCcEEEeecccccc-eecccccCCCCCC
Q 036689 235 ------IEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML--GSFEHLQHLEIRYCKGLQ-EIISKEGADDQVP 305 (595)
Q Consensus 235 ------l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~--~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~ 305 (595)
+... +| .+ ..+++|+.|+++++. +......... ...++|++|++++|. ++ .++. .... .
T Consensus 203 ~~~~~~~~~~----~~-~l-~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~-~~~~---~ 270 (520)
T 2z7x_B 203 DNKCSYFLSI----LA-KL-QTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVK-LQGQLDF-RDFD---Y 270 (520)
T ss_dssp TTTTHHHHHH----HH-GG-GGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEE-EESCCCC-CCCC---C
T ss_pred ccccceeecc----hh-hh-ccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeeccc-ccCcccc-chhh---c
Confidence 2211 12 22 567888888888753 3221111111 124589999999887 55 4443 2210 0
Q ss_pred CCcCCCcccEEeecCCCCcccccCCCccc--cCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCcc
Q 036689 306 PNFVFPQVTILRLVGLPELKCLYPGMHTS--EWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKV 383 (595)
Q Consensus 306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 383 (595)
....+++|+.+++.++.. .++...... .-++|+.|+++++... ..+. ...
T Consensus 271 ~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-------------------------~~~ 322 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC-------------------------PSK 322 (520)
T ss_dssp CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC-------------------------CSS
T ss_pred ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-cccc-------------------------hhh
Confidence 002378888888887543 333111000 0156889999887532 2221 257
Q ss_pred CCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC--CCCccccCCccEEeEeCCCCCcc-
Q 036689 384 FPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL--PSSSVSFRNLKILEVSGCKKLTN- 460 (595)
Q Consensus 384 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~--~~~~~~l~~L~~L~l~~c~~l~~- 460 (595)
+++|++|++++|...+..+. ....+++|+.|++++ +.+..++ +..+..+++|+.|+++++ .++.
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~----------N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 389 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQM----------NQLKELSKIAEMTTQMKSLQQLDISQN-SVSYD 389 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCS----------SCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCC
T ss_pred CCcccEEEeECCccChhhhh--hhccCCCCCEEEccC----------CccCccccchHHHhhCCCCCEEECCCC-cCCcc
Confidence 89999999999986653332 235678999999954 4454321 124667899999999984 5665
Q ss_pred cccchHHhhcccccEEEEcCcccccchhcccCcccccccccc-ccccceeccccccccccccCcccccCCCccEEEEeCC
Q 036689 461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVF-NKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGC 539 (595)
Q Consensus 461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C 539 (595)
+ +...+..+++|++|++++|. ++..... .+ ++|+.|+++++ .++.+|.+.. .+++|++|++++|
T Consensus 390 l-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----------~l~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~L~L~~N 454 (520)
T 2z7x_B 390 E-KKGDCSWTKSLLSLNMSSNI-LTDTIFR----------CLPPRIKVLDLHSN-KIKSIPKQVV--KLEALQELNVASN 454 (520)
T ss_dssp G-GGCSCCCCTTCCEEECCSSC-CCGGGGG----------SCCTTCCEEECCSS-CCCCCCGGGG--GCTTCCEEECCSS
T ss_pred c-ccchhccCccCCEEECcCCC-CCcchhh----------hhcccCCEEECCCC-cccccchhhh--cCCCCCEEECCCC
Confidence 5 33345678999999999987 4332211 13 69999999996 7888887764 5999999999998
Q ss_pred CCccccCCC-CCCCCCcceEEeccCCCccccCchH
Q 036689 540 PKMNIFTTG-ELSTPPRVDVMYRNRGAPCWDGDLN 573 (595)
Q Consensus 540 ~~l~~lp~~-~~~~~~L~~l~i~~~~~~~~~~~~~ 573 (595)
+++.+|.. +.++++|+++++++|. |.++..+.
T Consensus 455 -~l~~l~~~~~~~l~~L~~L~l~~N~-~~c~c~~~ 487 (520)
T 2z7x_B 455 -QLKSVPDGIFDRLTSLQKIWLHTNP-WDCSCPRI 487 (520)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC-BCCCHHHH
T ss_pred -cCCccCHHHhccCCcccEEECcCCC-CcccCCch
Confidence 78899987 7789999999998653 55554433
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.4e-24 Score=244.54 Aligned_cols=472 Identities=16% Similarity=0.093 Sum_probs=301.9
Q ss_pred ceeccccccc--ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC
Q 036689 2 RTLKLKFNSV--SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI 79 (595)
Q Consensus 2 ~~l~l~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 79 (595)
|.|+|..|.. .+.+++|+.+++|++|+|+++......+..+ +++++|++|+|++| .++...+.. ..+..+++
T Consensus 51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~n-~l~~~~~~~---~~~~~L~~ 124 (844)
T 3j0a_A 51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF--QGLFHLFELRLYFC-GLSDAVLKD---GYFRNLKA 124 (844)
T ss_dssp SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS--CSCSSCCCEECTTC-CCSSCCSTT---CCCSSCSS
T ss_pred eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc--cCCcccCEeeCcCC-CCCcccccC---ccccccCC
Confidence 5678877632 4557888899999999999998754334444 89999999999999 565321111 13678999
Q ss_pred ccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcC--CCCcEEEEcccCCcceeecccCccccc
Q 036689 80 LESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCL--PRLERIAVINCRNIQEIFVVDGEYDAI 157 (595)
Q Consensus 80 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~~~~~~ 157 (595)
|++|+++++ .+..... +..++.+++|++|+++++ .++...+ ..+..+ ++|++|++++|......+......
T Consensus 125 L~~L~Ls~N-~l~~~~~-~~~~~~L~~L~~L~Ls~N-~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~--- 197 (844)
T 3j0a_A 125 LTRLDLSKN-QIRSLYL-HPSFGKLNSLKSIDFSSN-QIFLVCE-HELEPLQGKTLSFFSLAANSLYSRVSVDWGKC--- 197 (844)
T ss_dssp CCEEEEESC-CCCCCCC-CGGGGTCSSCCEEEEESS-CCCCCCS-GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS---
T ss_pred CCEEECCCC-ccccccc-chhHhhCCCCCEEECCCC-cCCeeCH-HHcccccCCccceEECCCCccccccccchhhc---
Confidence 999999996 6655421 123789999999999995 5665543 455555 899999999976544333211000
Q ss_pred ccccccccccceEecCCCCCcccccccc----ccccccccc-------------------cccccCcc-ccc-----ccc
Q 036689 158 DHQKIEFGQLSTLCLGSLPELTSFCCEV----KKNRQAQGM-------------------HETCSNKI-SSL-----EDK 208 (595)
Q Consensus 158 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~~~~~-------------------~~~~~~~~-~~~-----~~~ 208 (595)
...+....|+.|+++++.--...+... ....+..+. .....+.. +.+ .++
T Consensus 198 -~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n 276 (844)
T 3j0a_A 198 -MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276 (844)
T ss_dssp -SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC
T ss_pred -CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC
Confidence 001122348888888763211111100 000000000 00000000 011 111
Q ss_pred --ccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEee
Q 036689 209 --LDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIR 286 (595)
Q Consensus 209 --~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~ 286 (595)
..... .....+++|+.|++++|.++.+....+ ..+++|++|+++++ .++.+.+. .+..+++|++|+++
T Consensus 277 ~l~~~~~---~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 277 FVFSLNS---RVFETLKDLKVLNLAYNKINKIADEAF-----YGLDNLQVLNLSYN-LLGELYSS-NFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEECS---CCSSSCCCCCEEEEESCCCCEECTTTT-----TTCSSCCEEEEESC-CCSCCCSC-SCSSCTTCCEEECC
T ss_pred cccccCh---hhhhcCCCCCEEECCCCcCCCCChHHh-----cCCCCCCEEECCCC-CCCccCHH-HhcCCCCCCEEECC
Confidence 11111 113468899999999998887733222 57899999999986 56665443 46889999999999
Q ss_pred cccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCC
Q 036689 287 YCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEE 366 (595)
Q Consensus 287 ~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 366 (595)
+|. +..++...+.. +++|+.|+++++. +..++. +++|+.|.++++. ++.+|.... ......
T Consensus 347 ~N~-i~~~~~~~~~~--------l~~L~~L~Ls~N~-l~~i~~------~~~L~~L~l~~N~-l~~l~~~~~--~l~~L~ 407 (844)
T 3j0a_A 347 KNH-IAIIQDQTFKF--------LEKLQTLDLRDNA-LTTIHF------IPSIPDIFLSGNK-LVTLPKINL--TANLIH 407 (844)
T ss_dssp SCC-CCCCCSSCSCS--------CCCCCEEEEETCC-SCCCSS------CCSCSEEEEESCC-CCCCCCCCT--TCCEEE
T ss_pred CCC-CCccChhhhcC--------CCCCCEEECCCCC-CCcccC------CCCcchhccCCCC-ccccccccc--ccceee
Confidence 997 87776543332 8999999999954 554433 7899999999875 445554211 111111
Q ss_pred CCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCcccc-----ccCCCCc
Q 036689 367 DKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLL-----ILLPSSS 441 (595)
Q Consensus 367 ~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~-----~~~~~~~ 441 (595)
.........+....+..+++|++|++++|+....... ......++|+.|++++ +.+. ...+..+
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~L~~L~Ls~----------N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-QTPSENPSLEQLFLGE----------NMLQLAWETELCWDVF 476 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS-SSSCSCTTCCBCEEES----------CCCSSSCCSCCCSSCS
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccc-cccccCCccccccCCC----------Cccccccccccchhhh
Confidence 1111222222222234789999999999986653322 2233478999999964 3343 2233356
Q ss_pred cccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccccccc
Q 036689 442 VSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCS 521 (595)
Q Consensus 442 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 521 (595)
..+++|+.|++++ +.++.+++ ..+..+++|++|+++++. ++.++.... .++|+.|+++++ .++.++.
T Consensus 477 ~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~---------~~~L~~L~Ls~N-~l~~~~~ 543 (844)
T 3j0a_A 477 EGLSHLQVLYLNH-NYLNSLPP-GVFSHLTALRGLSLNSNR-LTVLSHNDL---------PANLEILDISRN-QLLAPNP 543 (844)
T ss_dssp SCBCCEECCCCCH-HHHTTCCT-TSSSSCCSCSEEEEESCC-CSSCCCCCC---------CSCCCEEEEEEE-CCCCCCS
T ss_pred cCcccccEEECCC-CcccccCh-hHccchhhhheeECCCCC-CCccChhhh---------hccccEEECCCC-cCCCCCh
Confidence 6789999999999 46777644 445789999999999986 777755432 378999999995 6777765
Q ss_pred CcccccCCCccEEEEeCCCCccc
Q 036689 522 GNYIFKFPSLEVLFVVGCPKMNI 544 (595)
Q Consensus 522 ~~~~~~~~~L~~L~l~~C~~l~~ 544 (595)
.. +++|+.|+++++|-...
T Consensus 544 ~~----~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 544 DV----FVSLSVLDITHNKFICE 562 (844)
T ss_dssp CC----CSSCCEEEEEEECCCCS
T ss_pred hH----hCCcCEEEecCCCcccc
Confidence 54 67999999998765543
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=7.8e-24 Score=233.32 Aligned_cols=497 Identities=15% Similarity=0.120 Sum_probs=258.4
Q ss_pred ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689 2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80 (595)
Q Consensus 2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 80 (595)
+.|+|++|.+ .+.+..|+.+++|++|+|++|.. ..+++.. .+++++|++|+|++| .++.+++. .+..+++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~-f~~L~~L~~L~Ls~N-~l~~l~~~-----~f~~L~~L 126 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGA-YQSLSHLSTLILTGN-PIQSLALG-----AFSGLSSL 126 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTT-TTTCTTCCEEECTTC-CCCEECGG-----GGTTCTTC
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhH-hcCCCCCCEEEccCC-cCCCCCHH-----HhcCCCCC
Confidence 5677777765 34466677788888888888765 3343321 267888888888887 67777543 45677888
Q ss_pred cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccc-----
Q 036689 81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYD----- 155 (595)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~----- 155 (595)
++|+++++ +++.+... .++.+++|++|+++++ .++....+..++.+++|++|++++| .+..++...-...
T Consensus 127 ~~L~Ls~N-~l~~l~~~--~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 127 QKLVAVET-NLASLENF--PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp CEEECTTS-CCCCSTTC--CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred CEEECCCC-cCCCCChh--hhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhh
Confidence 88888885 66665322 3677888888888884 5655443366777888888888874 4444432110000
Q ss_pred -------------ccccccccccccceEecCCCCC-ccccccc---cccccccccccccccCccccccccccCCCccccc
Q 036689 156 -------------AIDHQKIEFGQLSTLCLGSLPE-LTSFCCE---VKKNRQAQGMHETCSNKISSLEDKLDISSPLFNE 218 (595)
Q Consensus 156 -------------~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (595)
.+.........++.+.+.+... +...... ........+......+. ....... ...
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~----~~l~~~~---~~~ 274 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE----GNLEKFD---KSA 274 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS----CCCSCCC---TTT
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc----ccccccc---ccc
Confidence 0000111111222222221100 0000000 00000000000000000 0000000 000
Q ss_pred cccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccc
Q 036689 219 KVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKE 298 (595)
Q Consensus 219 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 298 (595)
......+....+..+........ .+..+ ..+.+++.+.+.+.. +..+.. +.....|+.|++.++. +..++...
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~-~~~~~-~~~~~l~~l~~~~~~-~~~~~~---~~~~~~L~~L~l~~~~-~~~~~~~~ 347 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDG-IIDLF-NCLTNVSSFSLVSVT-IERVKD---FSYNFGWQHLELVNCK-FGQFPTLK 347 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEE-CTTTT-GGGTTCSEEEEESCE-EEECGG---GGSCCCCSEEEEESCE-ESSCCCCB
T ss_pred cccccchhhhhhhhhhhcccccc-hhhhh-hhhcccccccccccc-cccccc---cccchhhhhhhccccc-ccCcCccc
Confidence 01112222222221100000000 01110 234455555555432 222111 2334455555555554 33222100
Q ss_pred cCC-----------CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCC
Q 036689 299 GAD-----------DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEED 367 (595)
Q Consensus 299 ~~~-----------~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 367 (595)
... ........+++|+.++++++................+|+.+++..+.... .+
T Consensus 348 l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~------------- 413 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MS------------- 413 (635)
T ss_dssp CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-EC-------------
T ss_pred chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cc-------------
Confidence 000 00000111455555555543211110000011123445555544433221 11
Q ss_pred CCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCc
Q 036689 368 KPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNL 447 (595)
Q Consensus 368 ~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L 447 (595)
..+..+++|+.+++.++........ .....+++++.+++ ..+.+....+..+..+++|
T Consensus 414 -----------~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~l----------s~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 414 -----------SNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDI----------SHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp -----------SCCTTCTTCCEEECTTSEEESTTSS-CTTTTCTTCCEEEC----------TTSCCEECCTTTTTTCTTC
T ss_pred -----------ccccccccccchhhhhccccccccc-cccccccccccccc----------cccccccccccccccchhh
Confidence 1135678888888887766553322 22345667788887 4456777767677788999
Q ss_pred cEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCccccc
Q 036689 448 KILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFK 527 (595)
Q Consensus 448 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 527 (595)
+.|+++++.......+ ..++.+++|++|++++|. +++++..... .+++|+.|+++++ .++.++...+. .
T Consensus 472 ~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-------~l~~L~~L~Ls~N-~l~~l~~~~~~-~ 540 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAFN-------SLSSLQVLNMSHN-NFFSLDTFPYK-C 540 (635)
T ss_dssp CEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECTTS-CCCBCCCGGGT-T
T ss_pred hhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcChHHHc-------CCCCCCEEECCCC-cCCCCChhHHh-C
Confidence 9999999765555433 456789999999999996 7777654433 4899999999995 78888765432 5
Q ss_pred CCCccEEEEeCCCCcccc-CCCCCCC-CCcceEEeccCCCccccCchHH
Q 036689 528 FPSLEVLFVVGCPKMNIF-TTGELST-PPRVDVMYRNRGAPCWDGDLNT 574 (595)
Q Consensus 528 ~~~L~~L~l~~C~~l~~l-p~~~~~~-~~L~~l~i~~~~~~~~~~~~~~ 574 (595)
+++|++|+++++ +++.+ |..+.++ ++|++|++++|. |.|+.++..
T Consensus 541 l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np-~~C~C~~~~ 587 (635)
T 4g8a_A 541 LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND-FACTCEHQS 587 (635)
T ss_dssp CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC-BCCSGGGHH
T ss_pred CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC-CcccCCcHH
Confidence 899999999997 56665 5556666 689999998543 777776543
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.6e-25 Score=241.70 Aligned_cols=365 Identities=14% Similarity=0.100 Sum_probs=245.8
Q ss_pred CceEecCCCCCCCcCCcCCCccEEeccCccCccc------------------ccccccccc--CCCCccEEEecCCCCcc
Q 036689 60 DFMCIVDSKERVPLDDAFPILESLNLYNLIKLER------------------ICQDRLSVQ--SFNELKTIRVELCDQLS 119 (595)
Q Consensus 60 ~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~--~l~~L~~L~L~~c~~l~ 119 (595)
.++.+ +. .+..+++|++|+++++ .++. + +..++ .+++|++|++++|....
T Consensus 194 ~l~~i-p~-----~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~i---p~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 194 NITFV-SK-----AVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp EEEEE-CG-----GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHT---TSCCCGGGCTTCCEEEEECCTTCS
T ss_pred CCccC-CH-----HHhcccCCCEEECcCC-ccccccccccccccccchhcccC---chhhhhcccCCCCEEEecCCcCCc
Confidence 56665 33 4667899999999996 5766 4 44466 89999999999975555
Q ss_pred cccchhhhhcCCCCcEEEEcccCCcc--eeecccCcccccccccccccccceEecCCCCCcccccccccccccccccccc
Q 036689 120 NIFLLSAAKCLPRLERIAVINCRNIQ--EIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHET 197 (595)
Q Consensus 120 ~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 197 (595)
.+| ..+.++++|++|++++|..+. .+|...+.. .....+++|+.|+++++.- ..++.
T Consensus 264 ~~p--~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L----~~~~~l~~L~~L~L~~n~l-~~ip~-------------- 322 (636)
T 4eco_A 264 KLP--TFLKALPEMQLINVACNRGISGEQLKDDWQAL----ADAPVGEKIQIIYIGYNNL-KTFPV-------------- 322 (636)
T ss_dssp SCC--TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH----HHSGGGGTCCEEECCSSCC-SSCCC--------------
T ss_pred cCh--HHHhcCCCCCEEECcCCCCCccccchHHHHhh----hccccCCCCCEEECCCCcC-CccCc--------------
Confidence 444 678889999999999976343 344221000 0111248899999887642 23321
Q ss_pred ccCccccccccccCCCccccccccCCccceeecccccce-eecccCCCccccccCCCccEEEEecCCCCccccchhhhhc
Q 036689 198 CSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIE-KIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGS 276 (595)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~ 276 (595)
......+++|+.|++++|.++ .+ | .+ ..+++|+.|+++++ .++.++. .+..
T Consensus 323 ------------------~~~l~~l~~L~~L~L~~N~l~g~i-----p-~~-~~l~~L~~L~L~~N-~l~~lp~--~l~~ 374 (636)
T 4eco_A 323 ------------------ETSLQKMKKLGMLECLYNQLEGKL-----P-AF-GSEIKLASLNLAYN-QITEIPA--NFCG 374 (636)
T ss_dssp ------------------HHHHTTCTTCCEEECCSCCCEEEC-----C-CC-EEEEEESEEECCSS-EEEECCT--TSEE
T ss_pred ------------------hhhhccCCCCCEEeCcCCcCccch-----h-hh-CCCCCCCEEECCCC-ccccccH--hhhh
Confidence 001235789999999999887 55 5 33 57899999999976 5665433 3688
Q ss_pred cCC-CcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCC-----ccccCcccceeeecCCCCc
Q 036689 277 FEH-LQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGM-----HTSEWPALKLLDVSACDQV 350 (595)
Q Consensus 277 l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~-----~~~~~~~L~~L~l~~c~~l 350 (595)
+++ |++|++++|. ++.++. ... ...+++|+.|+++++.-....+... ....+++|+.|+++++. +
T Consensus 375 l~~~L~~L~Ls~N~-l~~lp~-~~~------~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l 445 (636)
T 4eco_A 375 FTEQVENLSFAHNK-LKYIPN-IFD------AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-I 445 (636)
T ss_dssp ECTTCCEEECCSSC-CSSCCS-CCC------TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-C
T ss_pred hcccCcEEEccCCc-Ccccch-hhh------hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-c
Confidence 888 9999999998 776654 211 1125689999999965433322211 11136789999998874 4
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCC-----cccccCceeEEeecccccc
Q 036689 351 TVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFP-----QHLFGGLKVLQLKFDASAA 425 (595)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~~l 425 (595)
+.+|. ..+..+++|++|++++|....+....+. ...+++|+.|+++
T Consensus 446 ~~lp~-----------------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls------ 496 (636)
T 4eco_A 446 SKFPK-----------------------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR------ 496 (636)
T ss_dssp CSCCT-----------------------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC------
T ss_pred CcCCH-----------------------HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc------
Confidence 46665 3335689999999999986643322111 1122389999994
Q ss_pred ccccCccccccCCCCcc--ccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc------cccchhcccCccccc
Q 036689 426 VVSSCDNLLILLPSSSV--SFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR------AMTQVVKSEGNQLAR 497 (595)
Q Consensus 426 ~~~~~~~l~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~------~l~~i~~~~~~~~~~ 497 (595)
.+.+..++. .+. .+++|+.|++++ +.++.+ +.. +..+++|++|+++++. -...++....
T Consensus 497 ----~N~l~~lp~-~~~~~~l~~L~~L~Ls~-N~l~~i-p~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~----- 563 (636)
T 4eco_A 497 ----FNKLTKLSD-DFRATTLPYLVGIDLSY-NSFSKF-PTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT----- 563 (636)
T ss_dssp ----SSCCCBCCG-GGSTTTCTTCCEEECCS-SCCSSC-CCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG-----
T ss_pred ----CCcCCccCh-hhhhccCCCcCEEECCC-CCCCCc-Chh-hhcCCCCCEEECCCCcccccCcccccChHHHh-----
Confidence 355665554 554 789999999999 567765 333 4689999999996543 2333333333
Q ss_pred cccccccccceeccccccccccccCcccccCCCccEEEEeCCCCc
Q 036689 498 EEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKM 542 (595)
Q Consensus 498 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l 542 (595)
.+++|+.|+++++ .++.+|... +++|+.|++++|+-.
T Consensus 564 ---~l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 564 ---LCPSLTQLQIGSN-DIRKVNEKI----TPNISVLDIKDNPNI 600 (636)
T ss_dssp ---GCSSCCEEECCSS-CCCBCCSCC----CTTCCEEECCSCTTC
T ss_pred ---cCCCCCEEECCCC-cCCccCHhH----hCcCCEEECcCCCCc
Confidence 4899999999996 568888765 589999999998643
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=3.6e-25 Score=247.83 Aligned_cols=366 Identities=13% Similarity=0.061 Sum_probs=250.2
Q ss_pred CceEecCCCCCCCcCCcCCCccEEeccCccCccc------------------ccccccccc--CCCCccEEEecCCCCcc
Q 036689 60 DFMCIVDSKERVPLDDAFPILESLNLYNLIKLER------------------ICQDRLSVQ--SFNELKTIRVELCDQLS 119 (595)
Q Consensus 60 ~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~--~l~~L~~L~L~~c~~l~ 119 (595)
.++.++ . .+..+++|++|+++++ .+.. + |..++ .+++|++|++++|....
T Consensus 436 ~L~~IP-~-----~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~i---P~~l~f~~L~~L~~L~Ls~N~l~~ 505 (876)
T 4ecn_A 436 RITFIS-K-----AIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYE---NEELSWSNLKDLTDVELYNCPNMT 505 (876)
T ss_dssp EEEEEC-G-----GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHT---TSCCCGGGCTTCCEEEEESCTTCC
T ss_pred cccchh-H-----HHhcCCCCCEEECcCC-cCCCCcccccccccccccccccC---ChhhhhccCCCCCEEECcCCCCCc
Confidence 566553 3 4678899999999996 6766 3 34456 89999999999976555
Q ss_pred cccchhhhhcCCCCcEEEEcccCCcc--eeecccCcccccccccccccccceEecCCCCCcccccccccccccccccccc
Q 036689 120 NIFLLSAAKCLPRLERIAVINCRNIQ--EIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHET 197 (595)
Q Consensus 120 ~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 197 (595)
.+| ..+.++++|++|++++|..+. .+|...+... .....+++|+.|+++++.-- .++.
T Consensus 506 ~iP--~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~---~~~~~l~~L~~L~Ls~N~L~-~ip~-------------- 565 (876)
T 4ecn_A 506 QLP--DFLYDLPELQSLNIACNRGISAAQLKADWTRLA---DDEDTGPKIQIFYMGYNNLE-EFPA-------------- 565 (876)
T ss_dssp SCC--GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH---HCTTTTTTCCEEECCSSCCC-BCCC--------------
T ss_pred cCh--HHHhCCCCCCEEECcCCCCcccccchHHHHhhh---hcccccCCccEEEeeCCcCC-ccCC--------------
Confidence 555 778899999999999976344 3443211000 01223568999999876422 3331
Q ss_pred ccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhcc
Q 036689 198 CSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSF 277 (595)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l 277 (595)
......+++|+.|++++|.++.+ | .+ ..+++|+.|+++++ .++.++. .+..+
T Consensus 566 ------------------~~~l~~L~~L~~L~Ls~N~l~~l-----p-~~-~~L~~L~~L~Ls~N-~l~~lp~--~l~~l 617 (876)
T 4ecn_A 566 ------------------SASLQKMVKLGLLDCVHNKVRHL-----E-AF-GTNVKLTDLKLDYN-QIEEIPE--DFCAF 617 (876)
T ss_dssp ------------------HHHHTTCTTCCEEECTTSCCCBC-----C-CC-CTTSEESEEECCSS-CCSCCCT--TSCEE
T ss_pred ------------------hhhhhcCCCCCEEECCCCCcccc-----h-hh-cCCCcceEEECcCC-ccccchH--HHhhc
Confidence 00123588999999999988755 5 33 67899999999986 4555433 36888
Q ss_pred CC-CcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc---CCCccccCcccceeeecCCCCcccc
Q 036689 278 EH-LQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY---PGMHTSEWPALKLLDVSACDQVTVF 353 (595)
Q Consensus 278 ~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l 353 (595)
++ |++|++++|. ++.++. ... ....++|+.|+++++.-...++ .......+++|+.|++++|. ++.+
T Consensus 618 ~~~L~~L~Ls~N~-L~~lp~-~~~------~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~l 688 (876)
T 4ecn_A 618 TDQVEGLGFSHNK-LKYIPN-IFN------AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKF 688 (876)
T ss_dssp CTTCCEEECCSSC-CCSCCS-CCC------TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSC
T ss_pred cccCCEEECcCCC-CCcCch-hhh------ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCcc
Confidence 98 9999999998 776653 111 1124569999999975433222 12222235689999999875 4466
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCC-----cccccCceeEEeeccccccccc
Q 036689 354 DSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFP-----QHLFGGLKVLQLKFDASAAVVS 428 (595)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~~l~~~ 428 (595)
|. .....+++|+.|++++|....+....+. ...+++|+.|++++
T Consensus 689 p~-----------------------~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~-------- 737 (876)
T 4ecn_A 689 PT-----------------------ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-------- 737 (876)
T ss_dssp CH-----------------------HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS--------
T ss_pred CH-----------------------HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC--------
Confidence 66 3335689999999999976643332221 12344899999943
Q ss_pred cCccccccCCCCcc--ccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc------cccchhcccCcccccccc
Q 036689 429 SCDNLLILLPSSSV--SFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR------AMTQVVKSEGNQLAREEI 500 (595)
Q Consensus 429 ~~~~l~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~------~l~~i~~~~~~~~~~~~~ 500 (595)
+.+..++. .+. .+++|+.|++++ +.++.+ +.. +..+++|+.|++++|+ ....++....
T Consensus 738 --N~L~~lp~-~l~~~~l~~L~~L~Ls~-N~L~~l-p~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~-------- 803 (876)
T 4ecn_A 738 --NKLTSLSD-DFRATTLPYLSNMDVSY-NCFSSF-PTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-------- 803 (876)
T ss_dssp --SCCCCCCG-GGSTTTCTTCCEEECCS-SCCSSC-CCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG--------
T ss_pred --CCCccchH-HhhhccCCCcCEEEeCC-CCCCcc-chh-hhcCCCCCEEECCCCCCcccccccccChHHHh--------
Confidence 45665554 554 789999999998 567775 333 4689999999998743 2233333222
Q ss_pred ccccccceeccccccccccccCcccccCCCccEEEEeCCCCc
Q 036689 501 VFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKM 542 (595)
Q Consensus 501 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l 542 (595)
.+++|+.|++++| .++.+|... +++|+.|++++|+-.
T Consensus 804 ~L~~L~~L~Ls~N-~L~~Ip~~l----~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 804 TCPSLIQLQIGSN-DIRKVDEKL----TPQLYILDIADNPNI 840 (876)
T ss_dssp GCSSCCEEECCSS-CCCBCCSCC----CSSSCEEECCSCTTC
T ss_pred cCCCCCEEECCCC-CCCccCHhh----cCCCCEEECCCCCCC
Confidence 4899999999997 568898775 579999999998643
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.3e-25 Score=236.25 Aligned_cols=430 Identities=12% Similarity=0.083 Sum_probs=262.0
Q ss_pred ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689 2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80 (595)
Q Consensus 2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 80 (595)
+.|+|+.|.+ .+.++.|+.+++|++|+++++......+..+ +++++|++|+|++| .++.++.. .+++|
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~--------~l~~L 92 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF--KFNQELEYLDLSHN-KLVKISCH--------PTVNL 92 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG--TTCTTCCEEECCSS-CCCEEECC--------CCCCC
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh--hcccCCCEEecCCC-ceeecCcc--------ccCCc
Confidence 5788888875 3446778899999999999998743333344 89999999999999 78877422 68999
Q ss_pred cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCC--cEEEEcccCC--cceeecccCccc-
Q 036689 81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRL--ERIAVINCRN--IQEIFVVDGEYD- 155 (595)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~~~~~~~- 155 (595)
++|+++++ .+..+. .+..++.+++|++|+++++ .++. ..+..+++| ++|++++|.. ....+.......
T Consensus 93 ~~L~L~~N-~l~~~~-~p~~~~~l~~L~~L~L~~n-~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 93 KHLDLSFN-AFDALP-ICKEFGNMSQLKFLGLSTT-HLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp SEEECCSS-CCSSCC-CCGGGGGCTTCCEEEEEES-SCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred cEEeccCC-cccccc-chhhhccCCcceEEEecCc-ccch----hhccccccceeeEEEeeccccccccccccccccccc
Confidence 99999996 666531 1334789999999999995 5654 345677888 9999999765 222221111000
Q ss_pred ---------------ccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccc
Q 036689 156 ---------------AIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKV 220 (595)
Q Consensus 156 ---------------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (595)
........+++|+.|+++++.....+.. . ........
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----------------~-----------~~~~~~l~ 217 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY-----------------F-----------LSILAKLQ 217 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH-----------------H-----------HHHHHGGG
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce-----------------e-----------ecchhhhc
Confidence 0000111244444444443321000000 0 00011223
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhh----hccCCCcEEEeecccccceecc
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML----GSFEHLQHLEIRYCKGLQEIIS 296 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~----~~l~~L~~L~l~~c~~l~~~~~ 296 (595)
.+++|+.|+++++.+.......++.+. ..++|++|++++|. ++...+..++ ++++.|+.++++++. + .++.
T Consensus 218 ~l~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~ 292 (520)
T 2z7x_B 218 TNPKLSNLTLNNIETTWNSFIRILQLV--WHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQ 292 (520)
T ss_dssp GCTTCCEEEEEEEEEEHHHHHHHHHHH--HTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECC-C-CSCT
T ss_pred cccchhhccccccccCHHHHHHHHHHh--hhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccc-e-ecch
Confidence 567788888877765532221122221 24578888888763 3321222111 567777778877776 4 3332
Q ss_pred cccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCC
Q 036689 297 KEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQP 376 (595)
Q Consensus 297 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (595)
..... ...-++|+.|+++++. +..... ...+++|++|+++++......|.
T Consensus 293 ~~~~~-----~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~--------------------- 342 (520)
T 2z7x_B 293 SYIYE-----IFSNMNIKNFTVSGTR-MVHMLC---PSKISPFLHLDFSNNLLTDTVFE--------------------- 342 (520)
T ss_dssp HHHHH-----HHHTCCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTTTT---------------------
T ss_pred hhhhc-----ccccCceeEEEcCCCc-cccccc---hhhCCcccEEEeECCccChhhhh---------------------
Confidence 11100 0001457888888765 332221 12367888888887754333333
Q ss_pred CCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccc-cCCCCccccCCccEEeEeCC
Q 036689 377 LFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLI-LLPSSSVSFRNLKILEVSGC 455 (595)
Q Consensus 377 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~-~~~~~~~~l~~L~~L~l~~c 455 (595)
.++.+++|++|++++|...++.........+++|+.|+++ .+.+.. ++...+..+++|+.|++++|
T Consensus 343 ---~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls----------~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 343 ---NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS----------QNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ---TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC----------SSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred ---hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC----------CCcCCcccccchhccCccCCEEECcCC
Confidence 1356788888888888755421100112356778888884 344555 54444667889999999985
Q ss_pred CCCcccccchHHhhc-ccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEE
Q 036689 456 KKLTNLVASSAAQSL-VALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVL 534 (595)
Q Consensus 456 ~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L 534 (595)
.++...+ ..+ ++|++|++++|. ++.++..... +++|+.|+++++ .++.+|.... ..+++|++|
T Consensus 410 -~l~~~~~----~~l~~~L~~L~Ls~N~-l~~ip~~~~~--------l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L~~L 473 (520)
T 2z7x_B 410 -ILTDTIF----RCLPPRIKVLDLHSNK-IKSIPKQVVK--------LEALQELNVASN-QLKSVPDGIF-DRLTSLQKI 473 (520)
T ss_dssp -CCCGGGG----GSCCTTCCEEECCSSC-CCCCCGGGGG--------CTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEE
T ss_pred -CCCcchh----hhhcccCCEEECCCCc-ccccchhhhc--------CCCCCEEECCCC-cCCccCHHHh-ccCCcccEE
Confidence 4543322 223 689999999986 7777655444 889999999996 7888887632 358899999
Q ss_pred EEeCCCC
Q 036689 535 FVVGCPK 541 (595)
Q Consensus 535 ~l~~C~~ 541 (595)
++++++-
T Consensus 474 ~l~~N~~ 480 (520)
T 2z7x_B 474 WLHTNPW 480 (520)
T ss_dssp ECCSSCB
T ss_pred ECcCCCC
Confidence 9998763
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.1e-23 Score=226.47 Aligned_cols=467 Identities=12% Similarity=0.038 Sum_probs=272.5
Q ss_pred ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689 2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 81 (595)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 81 (595)
+.+++..+.++-.|.+ ..+++++|+++++......+..+ +.+++|++|+|++| .++.+.+. .+..+++|+
T Consensus 34 ~~l~ls~~~L~~ip~~--~~~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKD--LPPRTKALSLSQNSISELRMPDI--SFLSELRVLRLSHN-RIRSLDFH-----VFLFNQDLE 103 (562)
T ss_dssp CEEECTTSCCCSCCTT--SCTTCCEEECCSSCCCCCCGGGT--TTCTTCCEEECCSC-CCCEECTT-----TTTTCTTCC
T ss_pred cEEEcCCCCCccCCCC--CCCCcCEEECCCCCccccChhhh--ccCCCccEEECCCC-CCCcCCHH-----HhCCCCCCC
Confidence 3455555543211332 34789999999888743322234 78999999999988 78877544 567788999
Q ss_pred EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689 82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK 161 (595)
Q Consensus 82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 161 (595)
+|+++++ .++.++.. .+++|++|++++| .++.++.+..++++++|++|+++++. +... ..
T Consensus 104 ~L~Ls~N-~l~~lp~~-----~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~------------~~ 163 (562)
T 3a79_B 104 YLDVSHN-RLQNISCC-----PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL------------DL 163 (562)
T ss_dssp EEECTTS-CCCEECSC-----CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCTT------------TT
T ss_pred EEECCCC-cCCccCcc-----ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-cccC------------ch
Confidence 9999986 67766321 6889999999995 67766544678889999999998843 3221 12
Q ss_pred cccccc--ceEecCCCCC--ccccccccccccccccccccccCccccccccccCCCccccccccCCccceeeccccc--c
Q 036689 162 IEFGQL--STLCLGSLPE--LTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVN--I 235 (595)
Q Consensus 162 ~~~~~L--~~L~l~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l 235 (595)
..+++| +.|+++++.- -...+..........+......+. -...........+++|+.++++++. .
T Consensus 164 ~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~--------~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 235 (562)
T 3a79_B 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS--------LFSVQVNMSVNALGHLQLSNIKLNDENC 235 (562)
T ss_dssp GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS--------CCCCCCEEEESSEEEEEEEEEECCSTTH
T ss_pred hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc--------chhhhhhhcccccceEEEeccccccccc
Confidence 223444 8888776543 111111000000000000000000 0000000011235566666666652 1
Q ss_pred eeecccCCCccccccCCCccEEEEecCCCCccccchh--hhhccCCCcEEEeecccccc-eecccccCCCCCCCCcCCCc
Q 036689 236 EKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSAS--MLGSFEHLQHLEIRYCKGLQ-EIISKEGADDQVPPNFVFPQ 312 (595)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~--~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~l~~ 312 (595)
..+ ... ...+ ..+++|+.+++.++. +....... .....++|++|++++|. ++ .++...+.. ..++
T Consensus 236 ~~l-~~~-~~~l-~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ip~~~~~~-------~~~~ 303 (562)
T 3a79_B 236 QRL-MTF-LSEL-TRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLT-ITERIDREEFTY-------SETA 303 (562)
T ss_dssp HHH-HHH-HHHH-HSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEE-ECSCCCCCCCCC-------CSCS
T ss_pred chH-HHH-HHHH-hccCcceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccE-eeccccchhhhc-------cccc
Confidence 111 000 1111 345666777666542 21110000 01123478888888877 54 444321110 0144
Q ss_pred ccEEeecCCCCcc-cccCCCc--cccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcce
Q 036689 313 VTILRLVGLPELK-CLYPGMH--TSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEE 389 (595)
Q Consensus 313 L~~L~L~~~~~l~-~~~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 389 (595)
|+.|.+.++.... .++.... ....++|+.|+++++.... ++ ..+.+++|++
T Consensus 304 L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~-------------------------~~~~l~~L~~ 357 (562)
T 3a79_B 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH-MV-------------------------CPPSPSSFTF 357 (562)
T ss_dssp CCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC-CC-------------------------CCSSCCCCCE
T ss_pred chheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc-cc-------------------------CccCCCCceE
Confidence 4444444322111 1110000 0012458888888875321 11 1257899999
Q ss_pred EeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC--CCCccccCCccEEeEeCCCCCcccccchHH
Q 036689 390 LGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL--PSSSVSFRNLKILEVSGCKKLTNLVASSAA 467 (595)
Q Consensus 390 L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 467 (595)
|++++|...+..+. ....+++|+.|++++ +.+..++ +..+..+++|+.|+++++ .++...+...+
T Consensus 358 L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~----------N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 424 (562)
T 3a79_B 358 LNFTQNVFTDSVFQ--GCSTLKRLQTLILQR----------NGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTC 424 (562)
T ss_dssp EECCSSCCCTTTTT--TCCSCSSCCEEECCS----------SCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCC
T ss_pred EECCCCccccchhh--hhcccCCCCEEECCC----------CCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhh
Confidence 99999986653332 235678999999953 4555433 225667899999999994 56652244455
Q ss_pred hhcccccEEEEcCcccccchhcccCcccccccccc-ccccceeccccccccccccCcccccCCCccEEEEeCCCCccccC
Q 036689 468 QSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVF-NKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFT 546 (595)
Q Consensus 468 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp 546 (595)
..+++|++|++++|. ++..... .+ ++|+.|+++++ .++.+|.+.. .+++|++|+++++ +++.+|
T Consensus 425 ~~l~~L~~L~l~~n~-l~~~~~~----------~l~~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~ 489 (562)
T 3a79_B 425 AWAESILVLNLSSNM-LTGSVFR----------CLPPKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVASN-QLKSVP 489 (562)
T ss_dssp CCCTTCCEEECCSSC-CCGGGGS----------SCCTTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCSS-CCCCCC
T ss_pred cCcccCCEEECCCCC-CCcchhh----------hhcCcCCEEECCCC-cCcccChhhc--CCCCCCEEECCCC-CCCCCC
Confidence 778999999999987 4332211 24 69999999996 8889998774 5999999999997 688999
Q ss_pred CC-CCCCCCcceEEeccCCCccccCchH
Q 036689 547 TG-ELSTPPRVDVMYRNRGAPCWDGDLN 573 (595)
Q Consensus 547 ~~-~~~~~~L~~l~i~~~~~~~~~~~~~ 573 (595)
.. +..+++|+++++++|. |.++..+.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~-~~c~c~~~ 516 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNP-WDCTCPGI 516 (562)
T ss_dssp TTSTTTCTTCCCEECCSCC-BCCCHHHH
T ss_pred HHHHhcCCCCCEEEecCCC-cCCCcchH
Confidence 87 7889999999998653 55554433
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.1e-22 Score=215.43 Aligned_cols=238 Identities=17% Similarity=0.214 Sum_probs=166.7
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+++|+.|++.+ .+..+ +. + ..+++|+.|+++++. ++.+. .+..+++|++|++++|. ++.+++..
T Consensus 154 ~l~~L~~L~l~~-~~~~~-----~~-~-~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~-- 218 (466)
T 1o6v_A 154 GLTSLQQLSFGN-QVTDL-----KP-L-ANLTTLERLDISSNK-VSDIS---VLAKLTNLESLIATNNQ-ISDITPLG-- 218 (466)
T ss_dssp TCTTCSEEEEEE-SCCCC-----GG-G-TTCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSC-CCCCGGGG--
T ss_pred cCCcccEeecCC-cccCc-----hh-h-ccCCCCCEEECcCCc-CCCCh---hhccCCCCCEEEecCCc-cccccccc--
Confidence 467788888753 33222 22 2 578999999999874 55543 35889999999999997 76664411
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP 380 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (595)
.+++|+.|+++++. +..++. ...+++|+.|++++|. ++.++.
T Consensus 219 --------~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~------------------------- 260 (466)
T 1o6v_A 219 --------ILTNLDELSLNGNQ-LKDIGT---LASLTNLTDLDLANNQ-ISNLAP------------------------- 260 (466)
T ss_dssp --------GCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECCSSC-CCCCGG-------------------------
T ss_pred --------ccCCCCEEECCCCC-cccchh---hhcCCCCCEEECCCCc-cccchh-------------------------
Confidence 28999999999964 444321 2237899999999875 333333
Q ss_pred CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689 381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN 460 (595)
Q Consensus 381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 460 (595)
+..+++|++|++++|....+.+ ...+++|+.|++.+ +.+..+++ +..+++|+.|++++| .++.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~----------n~l~~~~~--~~~l~~L~~L~L~~n-~l~~ 323 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNE----------NQLEDISP--ISNLKNLTYLTLYFN-NISD 323 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCS----------SCCSCCGG--GGGCTTCSEEECCSS-CCSC
T ss_pred hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCC----------CcccCchh--hcCCCCCCEEECcCC-cCCC
Confidence 3678999999999997655322 44678899999954 34555443 567899999999985 5666
Q ss_pred cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCC
Q 036689 461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCP 540 (595)
Q Consensus 461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~ 540 (595)
..+ +..+++|++|++++|. ++.++ ... .+++|+.|++++|. +++++. . ..+++|+.|++++|+
T Consensus 324 ~~~---~~~l~~L~~L~l~~n~-l~~~~-~l~--------~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 324 ISP---VSSLTKLQRLFFYNNK-VSDVS-SLA--------NLTNINWLSAGHNQ-ISDLTP-L--ANLTRITQLGLNDQA 386 (466)
T ss_dssp CGG---GGGCTTCCEEECCSSC-CCCCG-GGT--------TCTTCCEEECCSSC-CCBCGG-G--TTCTTCCEEECCCEE
T ss_pred chh---hccCccCCEeECCCCc-cCCch-hhc--------cCCCCCEEeCCCCc-cCccch-h--hcCCCCCEEeccCCc
Confidence 533 4688999999999986 66653 222 48899999999874 554443 2 358999999999873
Q ss_pred CccccC
Q 036689 541 KMNIFT 546 (595)
Q Consensus 541 ~l~~lp 546 (595)
+..+|
T Consensus 387 -~~~~p 391 (466)
T 1o6v_A 387 -WTNAP 391 (466)
T ss_dssp -EECCC
T ss_pred -ccCCc
Confidence 44444
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.9e-22 Score=213.57 Aligned_cols=349 Identities=20% Similarity=0.250 Sum_probs=254.4
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+++++.|++.++.. ..+ +.+ ..+++|++|++++| .++.++ .+..+++|++|+++++ .+..+.
T Consensus 44 ~l~~l~~L~l~~~~i-~~l-~~~--~~l~~L~~L~Ls~n-~l~~~~-------~~~~l~~L~~L~l~~n-~l~~~~---- 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI-KSI-DGV--EYLNNLTQINFSNN-QLTDIT-------PLKNLTKLVDILMNNN-QIADIT---- 106 (466)
T ss_dssp HHHTCCEEECCSSCC-CCC-TTG--GGCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSS-CCCCCG----
T ss_pred HhccccEEecCCCCC-ccC-cch--hhhcCCCEEECCCC-ccCCch-------hhhccccCCEEECCCC-ccccCh----
Confidence 578999999998876 343 334 78999999999998 566552 2567899999999996 666552
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
++..+++|++|++++| .+++++ .+.++++|++|++++|. +..++ ....+++|+.|++++ .+.
T Consensus 107 ~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~-----------~~~~l~~L~~L~l~~--~~~ 168 (466)
T 1o6v_A 107 PLANLTNLTGLTLFNN-QITDID---PLKNLTNLNRLELSSNT-ISDIS-----------ALSGLTSLQQLSFGN--QVT 168 (466)
T ss_dssp GGTTCTTCCEEECCSS-CCCCCG---GGTTCTTCSEEEEEEEE-ECCCG-----------GGTTCTTCSEEEEEE--SCC
T ss_pred hhcCCCCCCEEECCCC-CCCCCh---HHcCCCCCCEEECCCCc-cCCCh-----------hhccCCcccEeecCC--ccc
Confidence 2788999999999996 677764 27889999999999864 33332 244577888887753 111
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
.. .....+++|+.|++++|.++.+ +. + ..+++|++|++
T Consensus 169 ~~-----------------------------------~~~~~l~~L~~L~l~~n~l~~~-----~~-l-~~l~~L~~L~l 206 (466)
T 1o6v_A 169 DL-----------------------------------KPLANLTTLERLDISSNKVSDI-----SV-L-AKLTNLESLIA 206 (466)
T ss_dssp CC-----------------------------------GGGTTCTTCCEEECCSSCCCCC-----GG-G-GGCTTCSEEEC
T ss_pred Cc-----------------------------------hhhccCCCCCEEECcCCcCCCC-----hh-h-ccCCCCCEEEe
Confidence 11 1123588999999999987765 32 2 57899999999
Q ss_pred ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCccc
Q 036689 260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPAL 339 (595)
Q Consensus 260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L 339 (595)
++| .+....+ ++.+++|++|++++|. +++++. . ..+++|+.|+++++. +..... ...+++|
T Consensus 207 ~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~--l--------~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L 267 (466)
T 1o6v_A 207 TNN-QISDITP---LGILTNLDELSLNGNQ-LKDIGT--L--------ASLTNLTDLDLANNQ-ISNLAP---LSGLTKL 267 (466)
T ss_dssp CSS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCGG--G--------GGCTTCSEEECCSSC-CCCCGG---GTTCTTC
T ss_pred cCC-ccccccc---ccccCCCCEEECCCCC-cccchh--h--------hcCCCCCEEECCCCc-cccchh---hhcCCCC
Confidence 986 4555444 4789999999999997 776632 1 128999999999965 333322 2337999
Q ss_pred ceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEee
Q 036689 340 KLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLK 419 (595)
Q Consensus 340 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~ 419 (595)
+.|++++|. ++.++. +..+++|++|++++|...++.+ ...+++|+.|+++
T Consensus 268 ~~L~l~~n~-l~~~~~-------------------------~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 268 TELKLGANQ-ISNISP-------------------------LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLY 317 (466)
T ss_dssp SEEECCSSC-CCCCGG-------------------------GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECC
T ss_pred CEEECCCCc-cCcccc-------------------------ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECc
Confidence 999998874 333443 4678999999999997655322 4578899999995
Q ss_pred ccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccc
Q 036689 420 FDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREE 499 (595)
Q Consensus 420 ~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~ 499 (595)
+ +.+....+ +..+++|+.|++++| .++.+ ..+..+++|++|++++|. +.+++. ..
T Consensus 318 ~----------n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~~-~~------- 372 (466)
T 1o6v_A 318 F----------NNISDISP--VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQ-ISDLTP-LA------- 372 (466)
T ss_dssp S----------SCCSCCGG--GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCBCGG-GT-------
T ss_pred C----------CcCCCchh--hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCc-cCccch-hh-------
Confidence 3 44555543 567899999999996 66765 345789999999999997 555543 22
Q ss_pred cccccccceecccccccccccc
Q 036689 500 IVFNKLKMLSLLDLDSLTSFCS 521 (595)
Q Consensus 500 ~~l~~L~~L~l~~~~~l~~l~~ 521 (595)
.+++|+.|+++++ .++.+|.
T Consensus 373 -~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 373 -NLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp -TCTTCCEEECCCE-EEECCCB
T ss_pred -cCCCCCEEeccCC-cccCCch
Confidence 4899999999996 5666553
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.1e-22 Score=220.71 Aligned_cols=428 Identities=13% Similarity=0.089 Sum_probs=227.8
Q ss_pred ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689 2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80 (595)
Q Consensus 2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 80 (595)
+.|+|..|.+ .+.++.|+.+++|++|++++|......+..+ +++++|++|++++| .++.++.. .+++|
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~--------~l~~L 123 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF--LFNQDLEYLDVSHN-RLQNISCC--------PMASL 123 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECTTS-CCCEECSC--------CCTTC
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh--CCCCCCCEEECCCC-cCCccCcc--------ccccC
Confidence 5788888876 3446788899999999999997743223334 78999999999999 78887422 68999
Q ss_pred cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCC--cEEEEcccCC--cceeecccCccc-
Q 036689 81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRL--ERIAVINCRN--IQEIFVVDGEYD- 155 (595)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~~~~~~~- 155 (595)
++|+++++ .+..+.. +..++.+++|++|+++++ .++.. .+..+++| ++|++++|.. ....+.....-.
T Consensus 124 ~~L~Ls~N-~l~~l~~-p~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 124 RHLDLSFN-DFDVLPV-CKEFGNLTKLTFLGLSAA-KFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp SEEECCSS-CCSBCCC-CGGGGGCTTCCEEEEECS-BCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred CEEECCCC-CccccCc-hHhhcccCcccEEecCCC-ccccC----chhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 99999996 6766521 234788999999999994 56642 33455566 9999999654 111111000000
Q ss_pred ---------------ccccccccccccceEecCCCCC-ccccccccccccccccccccccCccccccccccCCCcccccc
Q 036689 156 ---------------AIDHQKIEFGQLSTLCLGSLPE-LTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEK 219 (595)
Q Consensus 156 ---------------~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (595)
........+++|+.+++++... ...+.. .....
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-------------------------------~~~~l 245 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-------------------------------FLSEL 245 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-------------------------------HHHHH
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-------------------------------HHHHH
Confidence 0000111244555555544210 000000 01111
Q ss_pred ccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhh-hccCCCcEEEeecccc--cceecc
Q 036689 220 VALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML-GSFEHLQHLEIRYCKG--LQEIIS 296 (595)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~-~~l~~L~~L~l~~c~~--l~~~~~ 296 (595)
..++.|+.|++.++.+........+... ..++|++|++++|.--..++. ..+ ...++|+.|.+.++.. + .++.
T Consensus 246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~-~~~~~~~~~L~~L~~~~~~~~~~-~~p~ 321 (562)
T 3a79_B 246 TRGPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDR-EEFTYSETALKSLMIEHVKNQVF-LFSK 321 (562)
T ss_dssp HSCSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCC-CCCCCCSCSCCEEEEEEEEECCC-SSCH
T ss_pred hccCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEeccEeeccccc-hhhhcccccchheehhhccccee-ecCh
Confidence 2345555555555433221111112221 234666666665531112211 110 0012333333332220 1 1111
Q ss_pred cccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCC
Q 036689 297 KEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQP 376 (595)
Q Consensus 297 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (595)
..... ....++|+.|+++++.- ..... ...+++|++|+++++.-....|.
T Consensus 322 ~~~~~-----~~~~~~L~~L~l~~n~~-~~~~~---~~~l~~L~~L~l~~n~l~~~~~~--------------------- 371 (562)
T 3a79_B 322 EALYS-----VFAEMNIKMLSISDTPF-IHMVC---PPSPSSFTFLNFTQNVFTDSVFQ--------------------- 371 (562)
T ss_dssp HHHHH-----HHHTCCCSEEEEESSCC-CCCCC---CSSCCCCCEEECCSSCCCTTTTT---------------------
T ss_pred hhhhh-----hhccCcceEEEccCCCc-ccccC---ccCCCCceEEECCCCccccchhh---------------------
Confidence 00000 00013466666666432 22111 01256666666666543222222
Q ss_pred CCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccc-cCCCCccccCCccEEeEeCC
Q 036689 377 LFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLI-LLPSSSVSFRNLKILEVSGC 455 (595)
Q Consensus 377 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~-~~~~~~~~l~~L~~L~l~~c 455 (595)
.+..+++|++|++++|+...+.........+++|+.|+++ .+.+.. ++...+..+++|+.|+++++
T Consensus 372 ---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~----------~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 372 ---GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS----------LNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ---TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT----------TSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ---hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC----------CCcCCCccChhhhcCcccCCEEECCCC
Confidence 1345566666666666544321100112345566666663 234444 44444566778888888874
Q ss_pred CCCcccccchHHhhc-ccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEE
Q 036689 456 KKLTNLVASSAAQSL-VALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVL 534 (595)
Q Consensus 456 ~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L 534 (595)
.++...+ ..+ ++|++|++++|. ++.++...+. +++|+.|+++++ .++.+|.+.. ..+++|+.|
T Consensus 439 -~l~~~~~----~~l~~~L~~L~L~~N~-l~~ip~~~~~--------l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L~~L 502 (562)
T 3a79_B 439 -MLTGSVF----RCLPPKVKVLDLHNNR-IMSIPKDVTH--------LQALQELNVASN-QLKSVPDGVF-DRLTSLQYI 502 (562)
T ss_dssp -CCCGGGG----SSCCTTCSEEECCSSC-CCCCCTTTTS--------SCCCSEEECCSS-CCCCCCTTST-TTCTTCCCE
T ss_pred -CCCcchh----hhhcCcCCEEECCCCc-CcccChhhcC--------CCCCCEEECCCC-CCCCCCHHHH-hcCCCCCEE
Confidence 4443212 233 578888888875 7777655444 788888888884 6777776622 247888888
Q ss_pred EEeCCCC
Q 036689 535 FVVGCPK 541 (595)
Q Consensus 535 ~l~~C~~ 541 (595)
++++++-
T Consensus 503 ~l~~N~~ 509 (562)
T 3a79_B 503 WLHDNPW 509 (562)
T ss_dssp ECCSCCB
T ss_pred EecCCCc
Confidence 8887753
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.5e-22 Score=212.25 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=43.7
Q ss_pred CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh
Q 036689 48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA 127 (595)
Q Consensus 48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~ 127 (595)
++|++|+|+++ .++.+.+. .+..+++|++|+++++.-...+. +..+..+++|++|++++| .++..++ ..+
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~L~~n~~~~~i~--~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNET-----SFSRLQDLQFLKVEQQTPGLVIR--NNTFRGLSSLIILKLDYN-QFLQLET-GAF 99 (455)
T ss_dssp TTCCEEECCSS-CCCEECTT-----TTSSCTTCCEEECCCCSTTCEEC--TTTTTTCTTCCEEECTTC-TTCEECT-TTT
T ss_pred CccCEEEecCC-ccCcCChh-----HhccCccccEEECcCCcccceEC--cccccccccCCEEeCCCC-ccCccCh-hhc
Confidence 55666666665 45554332 34455666666666642111221 122455666666666664 3444332 445
Q ss_pred hcCCCCcEEEEcccC
Q 036689 128 KCLPRLERIAVINCR 142 (595)
Q Consensus 128 ~~l~~L~~L~l~~c~ 142 (595)
+++++|++|++++|.
T Consensus 100 ~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 100 NGLANLEVLTLTQCN 114 (455)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred cCcccCCEEeCCCCC
Confidence 566666666666643
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.3e-22 Score=213.35 Aligned_cols=91 Identities=21% Similarity=0.078 Sum_probs=46.5
Q ss_pred CCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccc
Q 036689 385 PNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVAS 464 (595)
Q Consensus 385 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 464 (595)
++|++|++++|...++.. ..++|+.|++++ +.+..++. ..++|+.|++++ +.++.++.
T Consensus 277 ~~L~~L~ls~N~l~~l~~------~~~~L~~L~l~~----------N~l~~i~~----~~~~L~~L~Ls~-N~l~~lp~- 334 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSE------LPPNLYYLNASS----------NEIRSLCD----LPPSLEELNVSN-NKLIELPA- 334 (454)
T ss_dssp TTCCEEECCSSCCSEESC------CCTTCCEEECCS----------SCCSEECC----CCTTCCEEECCS-SCCSCCCC-
T ss_pred CcCCEEECcCCccCcccC------cCCcCCEEECcC----------CcCCcccC----CcCcCCEEECCC-Cccccccc-
Confidence 566666666665443211 114566666632 33333221 013666666666 34554421
Q ss_pred hHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccc
Q 036689 465 SAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDL 513 (595)
Q Consensus 465 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~ 513 (595)
.+++|++|++++|. +++++. . +++|+.|+++++
T Consensus 335 ----~~~~L~~L~L~~N~-l~~lp~---~--------l~~L~~L~L~~N 367 (454)
T 1jl5_A 335 ----LPPRLERLIASFNH-LAEVPE---L--------PQNLKQLHVEYN 367 (454)
T ss_dssp ----CCTTCCEEECCSSC-CSCCCC---C--------CTTCCEEECCSS
T ss_pred ----cCCcCCEEECCCCc-cccccc---h--------hhhccEEECCCC
Confidence 14666666666664 554433 1 566666666664
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.5e-22 Score=212.19 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=138.8
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
..++|++|+++++......+..+ +++++|++|++++|.-...+.+. .+..+++|++|+++++ .+..+. +.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~~~~~i~~~-----~~~~l~~L~~L~Ls~n-~l~~~~--~~ 97 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSF--SRLQDLQFLKVEQQTPGLVIRNN-----TFRGLSSLIILKLDYN-QFLQLE--TG 97 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTT--SSCTTCCEEECCCCSTTCEECTT-----TTTTCTTCCEEECTTC-TTCEEC--TT
T ss_pred CCCccCEEEecCCccCcCChhHh--ccCccccEEECcCCcccceECcc-----cccccccCCEEeCCCC-ccCccC--hh
Confidence 44789999999987743323334 78999999999998433355333 5677899999999996 566552 33
Q ss_pred cccCCCCccEEEecCCCCccc-ccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCc
Q 036689 100 SVQSFNELKTIRVELCDQLSN-IFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPEL 178 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 178 (595)
.++.+++|++|++++| .+++ .+....+..+++|++|++++|......+. .....+++|+.|+++++.--
T Consensus 98 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 98 AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA---------SFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC---------GGGGGCTTCCEEECTTCCBS
T ss_pred hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcc---------cccCCCCcccEEeCCCCccc
Confidence 4788999999999996 5554 23223478899999999998653322221 01345789999999876422
Q ss_pred cccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCc----cccccCCCc
Q 036689 179 TSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPV----AMFLCFQNL 254 (595)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~----~~~~~l~~L 254 (595)
...+. .+.. ....+|+.|+++++.+..+....+.. .+ ..+++|
T Consensus 168 ~~~~~-------------------------------~l~~-l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L 214 (455)
T 3v47_A 168 SICEE-------------------------------DLLN-FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSI 214 (455)
T ss_dssp CCCTT-------------------------------TSGG-GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEE
T ss_pred ccChh-------------------------------hhhc-cccccccccccccCcccccchhhccccccccc-ccccee
Confidence 11110 0110 11367889999988776653221110 00 245789
Q ss_pred cEEEEecCCCCccccchhhhh--ccCCCcEEEeecccc
Q 036689 255 TRLILRKCPKLKYIFSASMLG--SFEHLQHLEIRYCKG 290 (595)
Q Consensus 255 ~~L~L~~c~~l~~l~~~~~~~--~l~~L~~L~l~~c~~ 290 (595)
+.|+++++. ++...+..+.. ..++|+.|+++++..
T Consensus 215 ~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 215 TTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp EEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred eeEecCCCc-ccccchhhhhccccccceeeEeeccccc
Confidence 999999864 44433332221 137899999988863
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=4.1e-22 Score=206.05 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=50.6
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
-.++++++|.++++ .++.+++. .+..+++|++|+++++ .++.+.. ..+..+++|++|++++| .++.+++
T Consensus 42 ~~l~~l~~l~l~~~-~l~~l~~~-----~~~~l~~L~~L~L~~n-~i~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~- 110 (390)
T 3o6n_A 42 ITLNNQKIVTFKNS-TMRKLPAA-----LLDSFRQVELLNLNDL-QIEEIDT--YAFAYAHTIQKLYMGFN-AIRYLPP- 110 (390)
T ss_dssp GGGCCCSEEEEESC-EESEECTH-----HHHHCCCCSEEECTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCCCCCT-
T ss_pred cccCCceEEEecCC-chhhCChh-----HhcccccCcEEECCCC-cccccCh--hhccCCCCcCEEECCCC-CCCcCCH-
Confidence 35667777777666 56655322 3445667777777764 4554422 12556667777777764 4555443
Q ss_pred hhhhcCCCCcEEEEccc
Q 036689 125 SAAKCLPRLERIAVINC 141 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~c 141 (595)
..++++++|++|++++|
T Consensus 111 ~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERN 127 (390)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhcCCCCCCEEECCCC
Confidence 44566666777776663
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2e-22 Score=211.84 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=27.7
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccce
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQE 293 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 293 (595)
+++|++|++++|.++.+ |.. .++|++|+++++ .++.++ .++++++|++|++++|. +++
T Consensus 152 l~~L~~L~l~~N~l~~l-----p~~----~~~L~~L~L~~n-~l~~l~---~~~~l~~L~~L~l~~N~-l~~ 209 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKL-----PDL----PPSLEFIAAGNN-QLEELP---ELQNLPFLTAIYADNNS-LKK 209 (454)
T ss_dssp CTTCCEEECCSSCCSCC-----CCC----CTTCCEEECCSS-CCSSCC---CCTTCTTCCEEECCSSC-CSS
T ss_pred CCCCCEEECCCCcCccc-----CCC----cccccEEECcCC-cCCcCc---cccCCCCCCEEECCCCc-CCc
Confidence 45555555555544433 322 245555555543 333332 13455555555555554 443
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.5e-21 Score=204.65 Aligned_cols=301 Identities=22% Similarity=0.262 Sum_probs=203.4
Q ss_pred cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689 47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA 126 (595)
Q Consensus 47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~ 126 (595)
.+++++|+|+++ .++.+.+. .+..+++|++|+++++ .+..+. +..+..+++|++|+++++ .++.++. ..
T Consensus 31 ~~~l~~L~L~~n-~l~~~~~~-----~~~~l~~L~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~ 99 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLNQD-----EFASFPHLEELELNEN-IVSAVE--PGAFNNLFNLRTLGLRSN-RLKLIPL-GV 99 (477)
T ss_dssp CTTCSEEECCSS-CCCEECTT-----TTTTCTTCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECCSS-CCCSCCT-TS
T ss_pred CCCCcEEECCCC-ccceECHh-----HccCCCCCCEEECCCC-ccCEeC--hhhhhCCccCCEEECCCC-cCCccCc-cc
Confidence 357777888777 67666443 4566777888887775 555542 223667777888888774 5665553 45
Q ss_pred hhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccccc
Q 036689 127 AKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLE 206 (595)
Q Consensus 127 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (595)
+.++++|++|++++|. +..++..
T Consensus 100 ~~~l~~L~~L~Ls~n~-i~~~~~~-------------------------------------------------------- 122 (477)
T 2id5_A 100 FTGLSNLTKLDISENK-IVILLDY-------------------------------------------------------- 122 (477)
T ss_dssp STTCTTCCEEECTTSC-CCEECTT--------------------------------------------------------
T ss_pred ccCCCCCCEEECCCCc-cccCChh--------------------------------------------------------
Confidence 6677777777777743 2222100
Q ss_pred ccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEee
Q 036689 207 DKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIR 286 (595)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~ 286 (595)
.| ..+++|+.|++++|.++.+....+ ..+++|+.|+++++ .++.+++ ..+.++++|++|+++
T Consensus 123 --------~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~-~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 123 --------MF---QDLYNLKSLEVGDNDLVYISHRAF-----SGLNSLEQLTLEKC-NLTSIPT-EALSHLHGLIVLRLR 184 (477)
T ss_dssp --------TT---TTCTTCCEEEECCTTCCEECTTSS-----TTCTTCCEEEEESC-CCSSCCH-HHHTTCTTCCEEEEE
T ss_pred --------Hc---cccccCCEEECCCCccceeChhhc-----cCCCCCCEEECCCC-cCcccCh-hHhcccCCCcEEeCC
Confidence 01 136778888888887766632222 46788888888876 5666433 456788888888888
Q ss_pred cccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCC
Q 036689 287 YCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEE 366 (595)
Q Consensus 287 ~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 366 (595)
++. ++.++...+.. +++|+.|++++++.+..++..... ..+|+.|++++|. ++.+|.
T Consensus 185 ~n~-i~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~-l~~~~~----------- 241 (477)
T 2id5_A 185 HLN-INAIRDYSFKR--------LYRLKVLEISHWPYLDTMTPNCLY--GLNLTSLSITHCN-LTAVPY----------- 241 (477)
T ss_dssp SCC-CCEECTTCSCS--------CTTCCEEEEECCTTCCEECTTTTT--TCCCSEEEEESSC-CCSCCH-----------
T ss_pred CCc-CcEeChhhccc--------CcccceeeCCCCccccccCccccc--CccccEEECcCCc-ccccCH-----------
Confidence 887 77765533322 788888888888777766654332 4588888888874 555553
Q ss_pred CCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCC
Q 036689 367 DKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRN 446 (595)
Q Consensus 367 ~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~ 446 (595)
..+..+++|++|++++|....+... ....+++|+.|++. .+.+..+.+..+..+++
T Consensus 242 ------------~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~----------~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 242 ------------LAVRHLVYLRFLNLSYNPISTIEGS--MLHELLRLQEIQLV----------GGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp ------------HHHTTCTTCCEEECCSSCCCEECTT--SCTTCTTCCEEECC----------SSCCSEECTTTBTTCTT
T ss_pred ------------HHhcCccccCeeECCCCcCCccChh--hccccccCCEEECC----------CCccceECHHHhcCccc
Confidence 2245778899999988876554332 23466788888884 45677777777888899
Q ss_pred ccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc
Q 036689 447 LKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR 482 (595)
Q Consensus 447 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 482 (595)
|+.|++++ +.++.++ ...+..+++|++|++++++
T Consensus 298 L~~L~L~~-N~l~~~~-~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 298 LRVLNVSG-NQLTTLE-ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCS-SCCSCCC-GGGBSCGGGCCEEECCSSC
T ss_pred CCEEECCC-CcCceeC-HhHcCCCcccCEEEccCCC
Confidence 99999998 4677763 3455778999999998775
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=6.7e-21 Score=209.81 Aligned_cols=443 Identities=15% Similarity=0.088 Sum_probs=238.0
Q ss_pred ccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 22 KDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 22 ~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
.++++|+|+++.. +.+++ .+ .++++|++|+|++| +++.+++. .+..+++|++|+|+++ +++.+..+ .
T Consensus 52 ~~~~~LdLs~N~i-~~l~~~~f--~~l~~L~~L~Ls~N-~i~~i~~~-----~f~~L~~L~~L~Ls~N-~l~~l~~~--~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPL-RHLGSYSF--FSFPELQVLDLSRC-EIQTIEDG-----AYQSLSHLSTLILTGN-PIQSLALG--A 119 (635)
T ss_dssp TTCCEEECTTSCC-CEECTTTT--TTCTTCCEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCEECGG--G
T ss_pred cCCCEEEeeCCCC-CCCCHHHH--hCCCCCCEEECCCC-cCCCcChh-----HhcCCCCCCEEEccCC-cCCCCCHH--H
Confidence 5799999999877 44443 34 78999999999999 79888655 5778999999999996 77776433 3
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 180 (595)
+..+++|++|++++| .++.+++ ..++++++|++|++++|. +..+... .....+++|++|+++++. ++.
T Consensus 120 f~~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N~-l~~~~~~--------~~~~~l~~L~~L~L~~N~-l~~ 187 (635)
T 4g8a_A 120 FSGLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNL-IQSFKLP--------EYFSNLTNLEHLDLSSNK-IQS 187 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSC-CCCCCCC--------GGGGGCTTCCEEECCSSC-CCE
T ss_pred hcCCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccCc-cccCCCc--------hhhccchhhhhhcccCcc-ccc
Confidence 678999999999995 6777754 567889999999999854 4332210 223457889999998754 333
Q ss_pred ccccc-cc-cccccccccc-ccCccccccccccCCCccccccccCCccceeecccccce-eecccCCCccccccCCCccE
Q 036689 181 FCCEV-KK-NRQAQGMHET-CSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIE-KIWHNQLPVAMFLCFQNLTR 256 (595)
Q Consensus 181 ~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~l~~L~~ 256 (595)
+.... .. .......... .... ....+....+ ....++.+++.++... .+ +...+..+..++.
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n-----~l~~i~~~~~----~~~~~~~l~l~~n~~~~~~-----~~~~~~~l~~l~~ 253 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLN-----PMNFIQPGAF----KEIRLHKLTLRNNFDSLNV-----MKTCIQGLAGLEV 253 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTC-----CCCEECTTTT----TTCEEEEEEEESCCSSHHH-----HHHHHHTTTTCEE
T ss_pred cccccccchhhhhhhhhhhhcccC-----cccccCcccc----cchhhhhhhhhcccccccc-----cchhhcCCccccc
Confidence 22211 00 0000000000 0000 0000000001 1223344444443110 00 0000012233332
Q ss_pred EEEec--CCC---Cccccc--------------------------hhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689 257 LILRK--CPK---LKYIFS--------------------------ASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP 305 (595)
Q Consensus 257 L~L~~--c~~---l~~l~~--------------------------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 305 (595)
..+.. ... +..... ...+..+.+++.+.+.++. +..+....
T Consensus 254 ~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~------- 325 (635)
T 4g8a_A 254 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDFS------- 325 (635)
T ss_dssp EEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGGG-------
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccccccc-------
Confidence 22211 000 000000 0011222333333333333 22221100
Q ss_pred CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689 306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP 385 (595)
Q Consensus 306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 385 (595)
....|+.|++.++. +..+... .++.|+.+.+..+......+ ...++
T Consensus 326 ---~~~~L~~L~l~~~~-~~~~~~~----~l~~L~~l~l~~n~~~~~~~--------------------------~~~l~ 371 (635)
T 4g8a_A 326 ---YNFGWQHLELVNCK-FGQFPTL----KLKSLKRLTFTSNKGGNAFS--------------------------EVDLP 371 (635)
T ss_dssp ---SCCCCSEEEEESCE-ESSCCCC----BCTTCCEEEEESCCSCCBCC--------------------------CCBCT
T ss_pred ---cchhhhhhhccccc-ccCcCcc----cchhhhhcccccccCCCCcc--------------------------ccccc
Confidence 13344444444432 1111110 13333333333322111100 12345
Q ss_pred CcceEeccCCCCeeccCCC-----------------------CCcccccCceeEEeeccccccccccCccccccCCCCcc
Q 036689 386 NLEELGLDGKDIRMIWHGD-----------------------FPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSV 442 (595)
Q Consensus 386 ~L~~L~l~~~~~~~~~~~~-----------------------~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~ 442 (595)
+|+.|+++++......... .....+++|+.+++. .++.........+.
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~---------~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ---------HSNLKQMSEFSVFL 442 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECT---------TSEEESTTSSCTTT
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhh---------hccccccccccccc
Confidence 5555555554432211000 011233445555442 22333333344566
Q ss_pred ccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccC
Q 036689 443 SFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSG 522 (595)
Q Consensus 443 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 522 (595)
.+++++.++++. +.+....+ ..+..++.|++|+++++.....+...... .+++|+.|+++++ .++.++..
T Consensus 443 ~l~~l~~l~ls~-n~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~-------~l~~L~~L~Ls~N-~L~~l~~~ 512 (635)
T 4g8a_A 443 SLRNLIYLDISH-THTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFT-------ELRNLTFLDLSQC-QLEQLSPT 512 (635)
T ss_dssp TCTTCCEEECTT-SCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCT-------TCTTCCEEECTTS-CCCEECTT
T ss_pred cccccccccccc-cccccccc-cccccchhhhhhhhhhcccccccCchhhh-------hccccCEEECCCC-ccCCcChH
Confidence 788899999987 45665533 45577899999999998756555443332 4899999999996 78877655
Q ss_pred cccccCCCccEEEEeCCCCccccCC-CCCCCCCcceEEeccCCC
Q 036689 523 NYIFKFPSLEVLFVVGCPKMNIFTT-GELSTPPRVDVMYRNRGA 565 (595)
Q Consensus 523 ~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~i~~~~~ 565 (595)
.+. .+++|++|+++++ +++.+|. .+..+++|++|++++|.-
T Consensus 513 ~f~-~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 513 AFN-SLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp TTT-TCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred HHc-CCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcC
Confidence 432 5899999999997 7888765 467799999999998765
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.6e-21 Score=198.34 Aligned_cols=304 Identities=16% Similarity=0.224 Sum_probs=162.7
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
..+++|++|+++++ .++.+. .+..+++|++|+++++ .++.+.. +..+++|++|++++| .++++
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~-------~~~~~~~L~~L~l~~n-~i~~~~~----~~~l~~L~~L~L~~n-~i~~~--- 103 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQ-------GIEYLTNLEYLNLNGN-QITDISP----LSNLVKLTNLYIGTN-KITDI--- 103 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCC---
T ss_pred hhcccccEEEEeCC-ccccch-------hhhhcCCccEEEccCC-ccccchh----hhcCCcCCEEEccCC-cccCc---
Confidence 45555666666555 343321 2344555666666554 4443311 455556666666654 44443
Q ss_pred hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccc
Q 036689 125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISS 204 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (595)
+.+.++++|++|++++|. +..++ ....+++|+.|+++++..+....
T Consensus 104 ~~~~~l~~L~~L~l~~n~-i~~~~-----------~~~~l~~L~~L~l~~n~~~~~~~---------------------- 149 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDN-ISDIS-----------PLANLTKMYSLNLGANHNLSDLS---------------------- 149 (347)
T ss_dssp GGGTTCTTCSEEECTTSC-CCCCG-----------GGTTCTTCCEEECTTCTTCCCCG----------------------
T ss_pred hHHcCCCcCCEEECcCCc-ccCch-----------hhccCCceeEEECCCCCCccccc----------------------
Confidence 234555666666665532 22221 12234445555555444333211
Q ss_pred ccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEE
Q 036689 205 LEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLE 284 (595)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~ 284 (595)
....+++|++|++++|.+..+ +. + ..+++|+.|++++| .++++.+ +..+++|++|+
T Consensus 150 -------------~~~~l~~L~~L~l~~~~~~~~-----~~-~-~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~ 205 (347)
T 4fmz_A 150 -------------PLSNMTGLNYLTVTESKVKDV-----TP-I-ANLTDLYSLSLNYN-QIEDISP---LASLTSLHYFT 205 (347)
T ss_dssp -------------GGTTCTTCCEEECCSSCCCCC-----GG-G-GGCTTCSEEECTTS-CCCCCGG---GGGCTTCCEEE
T ss_pred -------------chhhCCCCcEEEecCCCcCCc-----hh-h-ccCCCCCEEEccCC-ccccccc---ccCCCccceee
Confidence 112356667777776655544 22 1 35677777777765 3444332 45667777777
Q ss_pred eecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCC
Q 036689 285 IRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESS 364 (595)
Q Consensus 285 l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 364 (595)
++++. ++.++. .. .+++|++|+++++. +..++. ...+++|+.|++++|. ++.++.
T Consensus 206 l~~n~-l~~~~~--~~--------~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~--------- 260 (347)
T 4fmz_A 206 AYVNQ-ITDITP--VA--------NMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDINA--------- 260 (347)
T ss_dssp CCSSC-CCCCGG--GG--------GCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCCGG---------
T ss_pred cccCC-CCCCch--hh--------cCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCChh---------
Confidence 77665 554432 11 16667777776643 333222 1225667777766653 333332
Q ss_pred CCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCcccc
Q 036689 365 EEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSF 444 (595)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l 444 (595)
+..+++|++|++++|.... + + .+..+
T Consensus 261 ----------------~~~l~~L~~L~l~~n~l~~------------------------------------~-~-~~~~l 286 (347)
T 4fmz_A 261 ----------------VKDLTKLKMLNVGSNQISD------------------------------------I-S-VLNNL 286 (347)
T ss_dssp ----------------GTTCTTCCEEECCSSCCCC------------------------------------C-G-GGGGC
T ss_pred ----------------HhcCCCcCEEEccCCccCC------------------------------------C-h-hhcCC
Confidence 3456677777776664221 1 1 34456
Q ss_pred CCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc
Q 036689 445 RNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD 514 (595)
Q Consensus 445 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (595)
++|+.|++++| .++...+ ..++.+++|++|++++|+ ++.++. .. .+++|+.|++++++
T Consensus 287 ~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~-~~--------~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP-LA--------SLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG-GG--------GCTTCSEESSSCC-
T ss_pred CCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC-hh--------hhhccceeehhhhc
Confidence 78888888885 4554422 445678888888888887 555543 22 37888888888763
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=4.1e-21 Score=198.54 Aligned_cols=236 Identities=17% Similarity=0.171 Sum_probs=146.5
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+++|++|++++|.++.+ |..++..+++|++|+++++ .++.+.+ ..++.+++|++|+++++. ++.++.
T Consensus 115 ~l~~L~~L~L~~n~l~~l-----~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~---- 182 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSL-----PRGIFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNLQLSSNR-LTHVDL---- 182 (390)
T ss_dssp TCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCBCCT-TTTSSCTTCCEEECCSSC-CSBCCG----
T ss_pred CCCCCCEEECCCCccCcC-----CHHHhcCCCCCcEEECCCC-ccCccCh-hhccCCCCCCEEECCCCc-CCcccc----
Confidence 356677777777766554 4433345667777777664 3444333 234666677777777665 554422
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP 380 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (595)
..+++|+.|+++++. +..+.. .++|+.|+++++. ++.+|.
T Consensus 183 -------~~l~~L~~L~l~~n~-l~~~~~------~~~L~~L~l~~n~-l~~~~~------------------------- 222 (390)
T 3o6n_A 183 -------SLIPSLFHANVSYNL-LSTLAI------PIAVEELDASHNS-INVVRG------------------------- 222 (390)
T ss_dssp -------GGCTTCSEEECCSSC-CSEEEC------CSSCSEEECCSSC-CCEEEC-------------------------
T ss_pred -------ccccccceeeccccc-ccccCC------CCcceEEECCCCe-eeeccc-------------------------
Confidence 116666666666632 333221 3556666666543 333333
Q ss_pred CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689 381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN 460 (595)
Q Consensus 381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 460 (595)
..+++|++|++++|... .. ..+..+++|+.|+++++ .++.
T Consensus 223 -~~~~~L~~L~l~~n~l~------------------------------------~~--~~l~~l~~L~~L~Ls~n-~l~~ 262 (390)
T 3o6n_A 223 -PVNVELTILKLQHNNLT------------------------------------DT--AWLLNYPGLVEVDLSYN-ELEK 262 (390)
T ss_dssp -CCCSSCCEEECCSSCCC------------------------------------CC--GGGGGCTTCSEEECCSS-CCCE
T ss_pred -cccccccEEECCCCCCc------------------------------------cc--HHHcCCCCccEEECCCC-cCCC
Confidence 23455666666665422 21 14556788888888884 5666
Q ss_pred cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCC
Q 036689 461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCP 540 (595)
Q Consensus 461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~ 540 (595)
..+ ..+..+++|++|++++|. ++.++..... +++|+.|+++++ .++.++... ..+++|++|++++|+
T Consensus 263 ~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~--------l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 263 IMY-HPFVKMQRLERLYISNNR-LVALNLYGQP--------IPTLKVLDLSHN-HLLHVERNQ--PQFDRLENLYLDHNS 329 (390)
T ss_dssp EES-GGGTTCSSCCEEECCSSC-CCEEECSSSC--------CTTCCEEECCSS-CCCCCGGGH--HHHTTCSEEECCSSC
T ss_pred cCh-hHccccccCCEEECCCCc-CcccCcccCC--------CCCCCEEECCCC-cceecCccc--cccCcCCEEECCCCc
Confidence 533 445778889999998876 6666544433 888999999886 677777654 348889999999874
Q ss_pred CccccCCCCCCCCCcceEEeccCC
Q 036689 541 KMNIFTTGELSTPPRVDVMYRNRG 564 (595)
Q Consensus 541 ~l~~lp~~~~~~~~L~~l~i~~~~ 564 (595)
++.+| ...+++|+++++++|.
T Consensus 330 -i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 330 -IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCC--CCTTCCCSEEECCSSC
T ss_pred -cceeC--chhhccCCEEEcCCCC
Confidence 66665 4568899999988654
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.7e-21 Score=212.65 Aligned_cols=309 Identities=18% Similarity=0.175 Sum_probs=163.1
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
-.+++++.|.+.++ .++.+++. .+..+++|++|+++++ .+..+.. ..++.+++|++|++++| .++.+++
T Consensus 48 l~l~~l~~l~l~~~-~l~~lp~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~- 116 (597)
T 3oja_B 48 ITLNNQKIVTFKNS-TMRKLPAA-----LLDSFRQVELLNLNDL-QIEEIDT--YAFAYAHTIQKLYMGFN-AIRYLPP- 116 (597)
T ss_dssp GGGCCCSEEEESSC-EESEECTH-----HHHHCCCCSEEECTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCCCCCT-
T ss_pred ccCCCceEEEeeCC-CCCCcCHH-----HHccCCCCcEEECCCC-CCCCCCh--HHhcCCCCCCEEECCCC-cCCCCCH-
Confidence 35677788888776 56666433 3456777888888875 5665532 23667778888888875 4666554
Q ss_pred hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccc
Q 036689 125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISS 204 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (595)
..++++++|++|++++| .+..++.. ...
T Consensus 117 ~~~~~l~~L~~L~L~~n-~l~~l~~~---------~~~------------------------------------------ 144 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERN-DLSSLPRG---------IFH------------------------------------------ 144 (597)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTT---------TTT------------------------------------------
T ss_pred HHHcCCCCCCEEEeeCC-CCCCCCHH---------Hhc------------------------------------------
Confidence 55677788888888774 33333311 001
Q ss_pred ccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEE
Q 036689 205 LEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLE 284 (595)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~ 284 (595)
.+++|++|++++|.++.+. |..+ ..+++|+.|+++++ .++.+ + ++.+++|++|+
T Consensus 145 ----------------~l~~L~~L~Ls~N~l~~~~----~~~~-~~l~~L~~L~L~~N-~l~~~-~---~~~l~~L~~L~ 198 (597)
T 3oja_B 145 ----------------NTPKLTTLSMSNNNLERIE----DDTF-QATTSLQNLQLSSN-RLTHV-D---LSLIPSLFHAN 198 (597)
T ss_dssp ----------------TCTTCCEEECCSSCCCBCC----TTTT-TTCTTCCEEECTTS-CCSBC-C---GGGCTTCSEEE
T ss_pred ----------------cCCCCCEEEeeCCcCCCCC----hhhh-hcCCcCcEEECcCC-CCCCc-C---hhhhhhhhhhh
Confidence 2344455555544443331 1111 34455555555543 23332 1 13445555555
Q ss_pred eecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCC
Q 036689 285 IRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESS 364 (595)
Q Consensus 285 l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 364 (595)
++++. ++.++. .++|+.|+++++. +..++... .++|+.|++++|. ++..+.
T Consensus 199 l~~n~-l~~l~~-------------~~~L~~L~ls~n~-l~~~~~~~----~~~L~~L~L~~n~-l~~~~~--------- 249 (597)
T 3oja_B 199 VSYNL-LSTLAI-------------PIAVEELDASHNS-INVVRGPV----NVELTILKLQHNN-LTDTAW--------- 249 (597)
T ss_dssp CCSSC-CSEEEC-------------CTTCSEEECCSSC-CCEEECSC----CSCCCEEECCSSC-CCCCGG---------
T ss_pred cccCc-cccccC-------------CchhheeeccCCc-cccccccc----CCCCCEEECCCCC-CCCChh---------
Confidence 55544 443322 3445555555532 33222211 3445555555443 111111
Q ss_pred CCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCcccc
Q 036689 365 EEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSF 444 (595)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l 444 (595)
+..+++|++|++++|....+.+. ....+++|+.|+++ .+.+..++. .+..+
T Consensus 250 ----------------l~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls----------~N~l~~l~~-~~~~l 300 (597)
T 3oja_B 250 ----------------LLNYPGLVEVDLSYNELEKIMYH--PFVKMQRLERLYIS----------NNRLVALNL-YGQPI 300 (597)
T ss_dssp ----------------GGGCTTCSEEECCSSCCCEEESG--GGTTCSSCCEEECT----------TSCCCEEEC-SSSCC
T ss_pred ----------------hccCCCCCEEECCCCccCCCCHH--HhcCccCCCEEECC----------CCCCCCCCc-ccccC
Confidence 23455555555555544332211 11233444444442 223333333 44557
Q ss_pred CCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc
Q 036689 445 RNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD 514 (595)
Q Consensus 445 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (595)
++|+.|++++| .+..++ ..+..+++|++|++++|. +..++. . .+++|+.|++++++
T Consensus 301 ~~L~~L~Ls~N-~l~~i~--~~~~~l~~L~~L~L~~N~-l~~~~~--~--------~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 301 PTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNS-IVTLKL--S--------THHTLKNLTLSHND 356 (597)
T ss_dssp TTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSC-CCCCCC--C--------TTCCCSEEECCSSC
T ss_pred CCCcEEECCCC-CCCccC--cccccCCCCCEEECCCCC-CCCcCh--h--------hcCCCCEEEeeCCC
Confidence 78888888884 566553 234677888888888876 555531 1 37788888888754
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.7e-21 Score=203.43 Aligned_cols=307 Identities=18% Similarity=0.157 Sum_probs=218.2
Q ss_pred cccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccc
Q 036689 17 KLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ 96 (595)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 96 (595)
.++.+++|++|+++++... .+ +.+ +.+++|++|++++| .++.+ .+..+++|++|+++++ .++.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~-~~-~~l--~~l~~L~~L~Ls~n-~l~~~--------~~~~l~~L~~L~Ls~N-~l~~~-- 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSIT-DM-TGI--EKLTGLTKLICTSN-NITTL--------DLSQNTNLTYLACDSN-KLTNL-- 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCC-CC-TTG--GGCTTCSEEECCSS-CCSCC--------CCTTCTTCSEEECCSS-CCSCC--
T ss_pred ChhHcCCCCEEEccCCCcc-cC-hhh--cccCCCCEEEccCC-cCCeE--------ccccCCCCCEEECcCC-CCcee--
Confidence 3447899999999998764 44 344 89999999999998 67654 3567899999999996 67665
Q ss_pred ccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCC
Q 036689 97 DRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLP 176 (595)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 176 (595)
+ ++.+++|++|++++| .++.++ ++.+++|++|++++|. +..++ ...+++|+.|+++++.
T Consensus 101 -~--~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~-l~~l~------------l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 101 -D--VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNT-LTEID------------VSHNTQLTELDCHLNK 159 (457)
T ss_dssp -C--CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSC-CSCCC------------CTTCTTCCEEECTTCS
T ss_pred -e--cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCc-cceec------------cccCCcCCEEECCCCC
Confidence 2 778999999999995 677653 6789999999999854 44332 3357889999998876
Q ss_pred CccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccE
Q 036689 177 ELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTR 256 (595)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~ 256 (595)
.+..+. ...+++|+.|++++|+++.+ | + ..+++|+.
T Consensus 160 ~~~~~~------------------------------------~~~l~~L~~L~ls~n~l~~l-----~--l-~~l~~L~~ 195 (457)
T 3bz5_A 160 KITKLD------------------------------------VTPQTQLTTLDCSFNKITEL-----D--V-SQNKLLNR 195 (457)
T ss_dssp CCCCCC------------------------------------CTTCTTCCEEECCSSCCCCC-----C--C-TTCTTCCE
T ss_pred cccccc------------------------------------cccCCcCCEEECCCCcccee-----c--c-ccCCCCCE
Confidence 555432 12478899999999988776 4 1 46899999
Q ss_pred EEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccC
Q 036689 257 LILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEW 336 (595)
Q Consensus 257 L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 336 (595)
|+++++ .++.+ + ++.+++|++|++++|. +++++. . .+++|+.|+++++. +..++.+. +
T Consensus 196 L~l~~N-~l~~~-~---l~~l~~L~~L~Ls~N~-l~~ip~---~--------~l~~L~~L~l~~N~-l~~~~~~~----l 253 (457)
T 3bz5_A 196 LNCDTN-NITKL-D---LNQNIQLTFLDCSSNK-LTEIDV---T--------PLTQLTYFDCSVNP-LTELDVST----L 253 (457)
T ss_dssp EECCSS-CCSCC-C---CTTCTTCSEEECCSSC-CSCCCC---T--------TCTTCSEEECCSSC-CSCCCCTT----C
T ss_pred EECcCC-cCCee-c---cccCCCCCEEECcCCc-ccccCc---c--------ccCCCCEEEeeCCc-CCCcCHHH----C
Confidence 999976 56654 2 4788999999999997 777642 1 28899999999854 55554332 5
Q ss_pred cccceee----------ecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCC
Q 036689 337 PALKLLD----------VSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFP 406 (595)
Q Consensus 337 ~~L~~L~----------l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 406 (595)
++|+.|. +++|..+..+|. +.+++|+.|++++|+..+.++.
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--------------------------~~l~~L~~L~Ls~n~~l~~l~~--- 304 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQA--------------------------EGCRKIKELDVTHNTQLYLLDC--- 304 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEEC--------------------------TTCTTCCCCCCTTCTTCCEEEC---
T ss_pred CCCCEEeccCCCCCEEECCCCccCCcccc--------------------------cccccCCEEECCCCcccceecc---
Confidence 5555554 444443333333 4678899999999886653321
Q ss_pred cccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccc
Q 036689 407 QHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQ 486 (595)
Q Consensus 407 ~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 486 (595)
..++|+.+++ ..+++|+.|++++ +.++.+ + ++.+++|++|+++++. +++
T Consensus 305 --~~~~L~~L~l-----------------------~~~~~L~~L~L~~-N~l~~l-~---l~~l~~L~~L~l~~N~-l~~ 353 (457)
T 3bz5_A 305 --QAAGITELDL-----------------------SQNPKLVYLYLNN-TELTEL-D---VSHNTKLKSLSCVNAH-IQD 353 (457)
T ss_dssp --TTCCCSCCCC-----------------------TTCTTCCEEECTT-CCCSCC-C---CTTCTTCSEEECCSSC-CCB
T ss_pred --CCCcceEech-----------------------hhcccCCEEECCC-Cccccc-c---cccCCcCcEEECCCCC-CCC
Confidence 1233333333 2356888888887 567765 2 4678889999888775 443
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1e-20 Score=198.98 Aligned_cols=310 Identities=18% Similarity=0.134 Sum_probs=216.1
Q ss_pred ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689 2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 81 (595)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 81 (595)
+.|+|..|.+.-.+ +++.+++|++|+++++... .+ ++ +.+++|++|++++| .++.+ .+..+++|+
T Consensus 45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~-~~--~~--~~l~~L~~L~Ls~N-~l~~~--------~~~~l~~L~ 109 (457)
T 3bz5_A 45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT-TL--DL--SQNTNLTYLACDSN-KLTNL--------DVTPLTKLT 109 (457)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCS-CC--CC--TTCTTCSEEECCSS-CCSCC--------CCTTCTTCC
T ss_pred CEEEccCCCcccCh-hhcccCCCCEEEccCCcCC-eE--cc--ccCCCCCEEECcCC-CCcee--------ecCCCCcCC
Confidence 56777776543223 6778999999999999763 33 24 79999999999998 56654 356789999
Q ss_pred EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689 82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK 161 (595)
Q Consensus 82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 161 (595)
+|+++++ .++.+ + ++.+++|++|++++| .++.++ ++.+++|++|++++|..+..++ .
T Consensus 110 ~L~L~~N-~l~~l---~--~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~------------~ 166 (457)
T 3bz5_A 110 YLNCDTN-KLTKL---D--VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD------------V 166 (457)
T ss_dssp EEECCSS-CCSCC---C--CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC------------C
T ss_pred EEECCCC-cCCee---c--CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc------------c
Confidence 9999996 77765 2 788999999999995 677652 6689999999999987666542 3
Q ss_pred ccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeeccc
Q 036689 162 IEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHN 241 (595)
Q Consensus 162 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 241 (595)
..+++|+.|+++++. ++.++ ...+++|+.|++++|.++.+
T Consensus 167 ~~l~~L~~L~ls~n~-l~~l~------------------------------------l~~l~~L~~L~l~~N~l~~~--- 206 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNK-ITELD------------------------------------VSQNKLLNRLNCDTNNITKL--- 206 (457)
T ss_dssp TTCTTCCEEECCSSC-CCCCC------------------------------------CTTCTTCCEEECCSSCCSCC---
T ss_pred ccCCcCCEEECCCCc-cceec------------------------------------cccCCCCCEEECcCCcCCee---
Confidence 357889999998763 22211 12478999999999988765
Q ss_pred CCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCC
Q 036689 242 QLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGL 321 (595)
Q Consensus 242 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 321 (595)
+ + ..+++|+.|+++++ .++.++ ++.+++|++|+++++. ++.++...... ...-.....+|+.|+++++
T Consensus 207 --~--l-~~l~~L~~L~Ls~N-~l~~ip----~~~l~~L~~L~l~~N~-l~~~~~~~l~~-L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 207 --D--L-NQNIQLTFLDCSSN-KLTEID----VTPLTQLTYFDCSVNP-LTELDVSTLSK-LTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp --C--C-TTCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CSCCCCTTCTT-CCEEECTTCCCSCCCCTTC
T ss_pred --c--c-ccCCCCCEEECcCC-cccccC----ccccCCCCEEEeeCCc-CCCcCHHHCCC-CCEEeccCCCCCEEECCCC
Confidence 2 1 46899999999986 566653 4788999999999997 87765321100 0000000124455556666
Q ss_pred CCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeecc
Q 036689 322 PELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIW 401 (595)
Q Consensus 322 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 401 (595)
..+..++.+ .+++|+.|++++|+.++.+|. ..++|+.|++++|
T Consensus 275 ~~~~~~~~~----~l~~L~~L~Ls~n~~l~~l~~---------------------------~~~~L~~L~l~~~------ 317 (457)
T 3bz5_A 275 TQLIYFQAE----GCRKIKELDVTHNTQLYLLDC---------------------------QAAGITELDLSQN------ 317 (457)
T ss_dssp TTCCEEECT----TCTTCCCCCCTTCTTCCEEEC---------------------------TTCCCSCCCCTTC------
T ss_pred ccCCccccc----ccccCCEEECCCCcccceecc---------------------------CCCcceEechhhc------
Confidence 555555432 379999999999998887776 2355555555554
Q ss_pred CCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689 402 HGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL 461 (595)
Q Consensus 402 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 461 (595)
++|+.|++ +.++++.+ .+..+++|+.|++++ +.++++
T Consensus 318 ---------~~L~~L~L----------~~N~l~~l---~l~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 318 ---------PKLVYLYL----------NNTELTEL---DVSHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp ---------TTCCEEEC----------TTCCCSCC---CCTTCTTCSEEECCS-SCCCBC
T ss_pred ---------ccCCEEEC----------CCCccccc---ccccCCcCcEEECCC-CCCCCc
Confidence 24555555 23344443 255678889998888 566653
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.8e-20 Score=190.55 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=100.9
Q ss_pred CCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCc
Q 036689 74 DDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGE 153 (595)
Q Consensus 74 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 153 (595)
...+++|++|++.++ .+..+. .+..+++|++|++++| .++++++ +..+++|++|++++| .+..++
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~~----~~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~~----- 104 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASIQ----GIEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDIS----- 104 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCCT----TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG-----
T ss_pred chhcccccEEEEeCC-ccccch----hhhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCch-----
Confidence 346788888888885 555541 2677888888888886 6666642 778888888888875 333221
Q ss_pred ccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccc
Q 036689 154 YDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKV 233 (595)
Q Consensus 154 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 233 (595)
.. ..+++|++|++++|
T Consensus 105 ------~~----------------------------------------------------------~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 105 ------AL----------------------------------------------------------QNLTNLRELYLNED 120 (347)
T ss_dssp ------GG----------------------------------------------------------TTCTTCSEEECTTS
T ss_pred ------HH----------------------------------------------------------cCCCcCCEEECcCC
Confidence 01 13556666666666
Q ss_pred cceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcc
Q 036689 234 NIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQV 313 (595)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L 313 (595)
.++.+ +. + ..+++|+.|++++|..+..... +..+++|++|++++|. +..++. .. .+++|
T Consensus 121 ~i~~~-----~~-~-~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~~~~~~--~~--------~l~~L 179 (347)
T 4fmz_A 121 NISDI-----SP-L-ANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-VKDVTP--IA--------NLTDL 179 (347)
T ss_dssp CCCCC-----GG-G-TTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-CCCCGG--GG--------GCTTC
T ss_pred cccCc-----hh-h-ccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-cCCchh--hc--------cCCCC
Confidence 55544 22 1 3566677777766655554322 4666677777777665 544432 11 16666
Q ss_pred cEEeecCCCCcccccCCCccccCcccceeeecCC
Q 036689 314 TILRLVGLPELKCLYPGMHTSEWPALKLLDVSAC 347 (595)
Q Consensus 314 ~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 347 (595)
++|+++++. +..++. ...+++|+.|.++++
T Consensus 180 ~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 180 YSLSLNYNQ-IEDISP---LASLTSLHYFTAYVN 209 (347)
T ss_dssp SEEECTTSC-CCCCGG---GGGCTTCCEEECCSS
T ss_pred CEEEccCCc-cccccc---ccCCCccceeecccC
Confidence 777666643 333222 122566666666655
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.3e-20 Score=203.69 Aligned_cols=236 Identities=19% Similarity=0.202 Sum_probs=144.2
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+++|++|++++|.++.+ |..++..+++|+.|+++++ .++.+++. .++.+++|++|++++|. ++.++..
T Consensus 121 ~l~~L~~L~L~~n~l~~l-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~--- 189 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSL-----PRGIFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNR-LTHVDLS--- 189 (597)
T ss_dssp TCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECTTSC-CSBCCGG---
T ss_pred CCCCCCEEEeeCCCCCCC-----CHHHhccCCCCCEEEeeCC-cCCCCChh-hhhcCCcCcEEECcCCC-CCCcChh---
Confidence 467888888888877765 5544356788888888875 45555443 45778888888888886 6655321
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP 380 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (595)
.+++|+.|+++++ .+..++. .++|+.|+++++. ++.++.
T Consensus 190 --------~l~~L~~L~l~~n-~l~~l~~------~~~L~~L~ls~n~-l~~~~~------------------------- 228 (597)
T 3oja_B 190 --------LIPSLFHANVSYN-LLSTLAI------PIAVEELDASHNS-INVVRG------------------------- 228 (597)
T ss_dssp --------GCTTCSEEECCSS-CCSEEEC------CTTCSEEECCSSC-CCEEEC-------------------------
T ss_pred --------hhhhhhhhhcccC-ccccccC------CchhheeeccCCc-cccccc-------------------------
Confidence 2788888888874 3443322 4678888887764 444443
Q ss_pred CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689 381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN 460 (595)
Q Consensus 381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 460 (595)
...++|+.|++++|..... .....+++|+.|+++ .+.+....+..+..+++|+.|++++ +.++.
T Consensus 229 -~~~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls----------~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~ 292 (597)
T 3oja_B 229 -PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLS----------YNELEKIMYHPFVKMQRLERLYISN-NRLVA 292 (597)
T ss_dssp -SCCSCCCEEECCSSCCCCC----GGGGGCTTCSEEECC----------SSCCCEEESGGGTTCSSCCEEECTT-SCCCE
T ss_pred -ccCCCCCEEECCCCCCCCC----hhhccCCCCCEEECC----------CCccCCCCHHHhcCccCCCEEECCC-CCCCC
Confidence 2346788888888765432 223355666666663 2445555554555666666666666 34555
Q ss_pred cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCC
Q 036689 461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCP 540 (595)
Q Consensus 461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~ 540 (595)
++. ....+++|++|++++|. +..++.... .+++|+.|+++++ .++.++.. .+++|++|++++++
T Consensus 293 l~~--~~~~l~~L~~L~Ls~N~-l~~i~~~~~--------~l~~L~~L~L~~N-~l~~~~~~----~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 293 LNL--YGQPIPTLKVLDLSHNH-LLHVERNQP--------QFDRLENLYLDHN-SIVTLKLS----THHTLKNLTLSHND 356 (597)
T ss_dssp EEC--SSSCCTTCCEEECCSSC-CCCCGGGHH--------HHTTCSEEECCSS-CCCCCCCC----TTCCCSEEECCSSC
T ss_pred CCc--ccccCCCCcEEECCCCC-CCccCcccc--------cCCCCCEEECCCC-CCCCcChh----hcCCCCEEEeeCCC
Confidence 421 22446666666666665 555543332 2666666666664 35555432 26666666666654
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=2.6e-20 Score=197.96 Aligned_cols=301 Identities=19% Similarity=0.199 Sum_probs=214.6
Q ss_pred CCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccc
Q 036689 77 FPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDA 156 (595)
Q Consensus 77 ~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 156 (595)
.+++++|+++++ +++.+.. ..+..+++|++|++++| .++.+.+ ..+.++++|++|++++| .+..++..
T Consensus 31 ~~~l~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~------ 98 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLNQ--DEFASFPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLG------ 98 (477)
T ss_dssp CTTCSEEECCSS-CCCEECT--TTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCSCCTT------
T ss_pred CCCCcEEECCCC-ccceECH--hHccCCCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCCC-cCCccCcc------
Confidence 357788888875 6666532 23667788888888874 5665543 56677788888888774 23332210
Q ss_pred cccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccce
Q 036689 157 IDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIE 236 (595)
Q Consensus 157 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 236 (595)
.| ..+++|++|++++|.++
T Consensus 99 ----------------------------------------------------------~~---~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 99 ----------------------------------------------------------VF---TGLSNLTKLDISENKIV 117 (477)
T ss_dssp ----------------------------------------------------------SS---TTCTTCCEEECTTSCCC
T ss_pred ----------------------------------------------------------cc---cCCCCCCEEECCCCccc
Confidence 11 24788999999999887
Q ss_pred eecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEE
Q 036689 237 KIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTIL 316 (595)
Q Consensus 237 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L 316 (595)
.+.... +..+++|++|+++++ .++.+.+. .+.++++|++|++++|. ++.++...+.. +++|+.|
T Consensus 118 ~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~l~~--------l~~L~~L 181 (477)
T 2id5_A 118 ILLDYM-----FQDLYNLKSLEVGDN-DLVYISHR-AFSGLNSLEQLTLEKCN-LTSIPTEALSH--------LHGLIVL 181 (477)
T ss_dssp EECTTT-----TTTCTTCCEEEECCT-TCCEECTT-SSTTCTTCCEEEEESCC-CSSCCHHHHTT--------CTTCCEE
T ss_pred cCChhH-----ccccccCCEEECCCC-ccceeChh-hccCCCCCCEEECCCCc-CcccChhHhcc--------cCCCcEE
Confidence 763222 257899999999975 56665443 46889999999999997 88776533333 8999999
Q ss_pred eecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCC
Q 036689 317 RLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKD 396 (595)
Q Consensus 317 ~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 396 (595)
++.++. +..+.... ...+++|+.|++++|+.+..++.. . ....+|++|++++|.
T Consensus 182 ~l~~n~-i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~-----------------------~-~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 182 RLRHLN-INAIRDYS-FKRLYRLKVLEISHWPYLDTMTPN-----------------------C-LYGLNLTSLSITHCN 235 (477)
T ss_dssp EEESCC-CCEECTTC-SCSCTTCCEEEEECCTTCCEECTT-----------------------T-TTTCCCSEEEEESSC
T ss_pred eCCCCc-CcEeChhh-cccCcccceeeCCCCccccccCcc-----------------------c-ccCccccEEECcCCc
Confidence 999965 44443322 233799999999999888877762 1 234599999999997
Q ss_pred CeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEE
Q 036689 397 IRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKM 476 (595)
Q Consensus 397 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 476 (595)
...+.. .....+++|+.|+++ .+.+..+++..+..+++|+.|++++ +.++.+.+ ..+..+++|++|
T Consensus 236 l~~~~~--~~~~~l~~L~~L~Ls----------~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L 301 (477)
T 2id5_A 236 LTAVPY--LAVRHLVYLRFLNLS----------YNPISTIEGSMLHELLRLQEIQLVG-GQLAVVEP-YAFRGLNYLRVL 301 (477)
T ss_dssp CCSCCH--HHHTTCTTCCEEECC----------SSCCCEECTTSCTTCTTCCEEECCS-SCCSEECT-TTBTTCTTCCEE
T ss_pred ccccCH--HHhcCccccCeeECC----------CCcCCccChhhccccccCCEEECCC-CccceECH-HHhcCcccCCEE
Confidence 554221 112467899999994 4567777777788899999999999 56777644 445789999999
Q ss_pred EEcCcccccchhcccCccccccccccccccceeccccc
Q 036689 477 QVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD 514 (595)
Q Consensus 477 ~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (595)
++++|. ++.++..... .+++|+.|++.+++
T Consensus 302 ~L~~N~-l~~~~~~~~~-------~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 302 NVSGNQ-LTTLEESVFH-------SVGNLETLILDSNP 331 (477)
T ss_dssp ECCSSC-CSCCCGGGBS-------CGGGCCEEECCSSC
T ss_pred ECCCCc-CceeCHhHcC-------CCcccCEEEccCCC
Confidence 999986 7777654433 48899999998854
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.3e-22 Score=221.91 Aligned_cols=441 Identities=15% Similarity=0.057 Sum_probs=245.7
Q ss_pred ccccccEEEeccCCCCcc---ccccc----------cccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC-ccEEec
Q 036689 20 GIKDVEYLCLDKSQDVKN---VLFDL----------DREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI-LESLNL 85 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~---~~~~~----------~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~-L~~L~l 85 (595)
.+++|++|++.++..... ++... ....+++|++|+|++| .++..... .....+++ |++|++
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~----~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLD----RLAKARADDLETLKL 145 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHH----HHHHHHGGGCCEEEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHH----HHHHhccccCcEEEC
Confidence 567788888876654321 11111 0126778888888777 34321000 01122444 888888
Q ss_pred cCccCccccccccccccCCCCccEEEecCCCCccccc---chhhhhcCCCCcEEEEcccCCcceeecccCcccccccccc
Q 036689 86 YNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIF---LLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKI 162 (595)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 162 (595)
.+|..+..... ......+++|++|++++|. +++.. ....+.++++|++|+++++.. ..+.. ........
T Consensus 146 ~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~-----~~l~~~~~ 217 (592)
T 3ogk_B 146 DKCSGFTTDGL-LSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISP-----KDLETIAR 217 (592)
T ss_dssp ESCEEEEHHHH-HHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCC-SSCCH-----HHHHHHHH
T ss_pred cCCCCcCHHHH-HHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCC-CccCH-----HHHHHHHh
Confidence 77753322100 1112367788888888763 33321 113556677888888776432 21100 00111223
Q ss_pred cccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccC
Q 036689 163 EFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQ 242 (595)
Q Consensus 163 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 242 (595)
.+++|++|+++++.. ..++ .....+++|+.|+++++... .....
T Consensus 218 ~~~~L~~L~L~~~~~-~~l~----------------------------------~~~~~~~~L~~L~l~~~~~~-~~~~~ 261 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEI-LELV----------------------------------GFFKAAANLEEFCGGSLNED-IGMPE 261 (592)
T ss_dssp HCTTCCEEECSSCBG-GGGH----------------------------------HHHHHCTTCCEEEECBCCCC-TTCTT
T ss_pred hCCCCcEEeccCccH-HHHH----------------------------------HHHhhhhHHHhhcccccccc-cchHH
Confidence 467788887777432 1111 11224678888888764111 00011
Q ss_pred CCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689 243 LPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 243 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 322 (595)
.+..+ ..+++|+.|+++++. ...+ + ..+..+++|++|++++|. ++......... .+++|++|++.++
T Consensus 262 ~~~~l-~~~~~L~~L~l~~~~-~~~l-~-~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~-------~~~~L~~L~L~~~- 328 (592)
T 3ogk_B 262 KYMNL-VFPRKLCRLGLSYMG-PNEM-P-ILFPFAAQIRKLDLLYAL-LETEDHCTLIQ-------KCPNLEVLETRNV- 328 (592)
T ss_dssp SSSCC-CCCTTCCEEEETTCC-TTTG-G-GGGGGGGGCCEEEETTCC-CCHHHHHHHHT-------TCTTCCEEEEEGG-
T ss_pred HHHHh-hccccccccCccccc-hhHH-H-HHHhhcCCCcEEecCCCc-CCHHHHHHHHH-------hCcCCCEEeccCc-
Confidence 12222 467889999888642 2222 2 245788899999999987 54332211111 2889999999842
Q ss_pred CcccccCCCccccCcccceeeecC----------CCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEec
Q 036689 323 ELKCLYPGMHTSEWPALKLLDVSA----------CDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGL 392 (595)
Q Consensus 323 ~l~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l 392 (595)
+.+.........+++|++|++.+ |..++.... ..+...+++|++|++
T Consensus 329 -~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~----------------------~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 329 -IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL----------------------IALAQGCQELEYMAV 385 (592)
T ss_dssp -GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH----------------------HHHHHHCTTCSEEEE
T ss_pred -cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH----------------------HHHHhhCccCeEEEe
Confidence 22211111122378899999995 666553211 011346899999999
Q ss_pred cCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCC-----CccccCCccEEeEeCCCC-CcccccchH
Q 036689 393 DGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPS-----SSVSFRNLKILEVSGCKK-LTNLVASSA 466 (595)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~-----~~~~l~~L~~L~l~~c~~-l~~~~~~~~ 466 (595)
..+...... .......+++|+.|++.++. .|+.++..+.. .+..+++|+.|+++.|.+ +++.....+
T Consensus 386 ~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 386 YVSDITNES-LESIGTYLKNLCDFRLVLLD------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp EESCCCHHH-HHHHHHHCCSCCEEEEEECS------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred ecCCccHHH-HHHHHhhCCCCcEEEEeecC------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 544332210 00011246789999997543 46666653211 244588999999988764 454433344
Q ss_pred HhhcccccEEEEcCcccccch--hcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccc
Q 036689 467 AQSLVALVKMQVFGCRAMTQV--VKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNI 544 (595)
Q Consensus 467 ~~~l~~L~~L~l~~c~~l~~i--~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~ 544 (595)
...+++|++|++++|. ++.. +.... .+++|+.|++++|+ ++.-........+++|++|++++|+ ++.
T Consensus 459 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~--------~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVG-ESDEGLMEFSR--------GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHSCTTCCEEEECSCC-SSHHHHHHHHT--------CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHhCccceEeeccCCC-CCHHHHHHHHh--------cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 4568999999999886 5432 11112 37899999999987 5432111111348999999999997 553
Q ss_pred cCC--CCCCCCCcceEEeccC
Q 036689 545 FTT--GELSTPPRVDVMYRNR 563 (595)
Q Consensus 545 lp~--~~~~~~~L~~l~i~~~ 563 (595)
-.. ....+|.+....+..+
T Consensus 528 ~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 528 TGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp TCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHhCCCcEEEEecCc
Confidence 321 1235677777766643
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=5e-22 Score=217.15 Aligned_cols=415 Identities=13% Similarity=0.046 Sum_probs=249.7
Q ss_pred ccccccEEEeccCCCCccccccccccccCC-CcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccc-
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQ-LKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD- 97 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 97 (595)
.+++|++|+|+++......+..+ ...+++ |++|+|.+|.++.. . .+......+++|++|++++| .+......
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~~L~~L~L~~~~~~~~---~-~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~ 183 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRL-AKARADDLETLKLDKCSGFTT---D-GLLSIVTHCRKIKTLLMEES-SFSEKDGKW 183 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHH-HHHHGGGCCEEEEESCEEEEH---H-HHHHHHHHCTTCSEEECTTC-EEECCCSHH
T ss_pred hCCCCCeEEeeccEecHHHHHHH-HHhccccCcEEECcCCCCcCH---H-HHHHHHhhCCCCCEEECccc-cccCcchhH
Confidence 68999999999985433222222 233555 99999999853321 1 11112347899999999997 44322100
Q ss_pred -cccccCCCCccEEEecCCCCcccc---cchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecC
Q 036689 98 -RLSVQSFNELKTIRVELCDQLSNI---FLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLG 173 (595)
Q Consensus 98 -~~~~~~l~~L~~L~L~~c~~l~~~---~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 173 (595)
......+++|++|+++++ .++.. .....+.++++|++|++++|.. ..++ .....+++|++|+++
T Consensus 184 l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~----------~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEI-LELV----------GFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGH----------HHHHHCTTCCEEEEC
T ss_pred HHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHH----------HHHhhhhHHHhhccc
Confidence 011356899999999985 44411 1125667899999999999643 2222 234457889999887
Q ss_pred CCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCC
Q 036689 174 SLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQN 253 (595)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~ 253 (595)
++....... ..+.....+++|+.|.++++.... +|..+ ..+++
T Consensus 252 ~~~~~~~~~-------------------------------~~~~~l~~~~~L~~L~l~~~~~~~-----l~~~~-~~~~~ 294 (592)
T 3ogk_B 252 SLNEDIGMP-------------------------------EKYMNLVFPRKLCRLGLSYMGPNE-----MPILF-PFAAQ 294 (592)
T ss_dssp BCCCCTTCT-------------------------------TSSSCCCCCTTCCEEEETTCCTTT-----GGGGG-GGGGG
T ss_pred ccccccchH-------------------------------HHHHHhhccccccccCccccchhH-----HHHHH-hhcCC
Confidence 643221100 012223457788888887652222 24443 56889
Q ss_pred ccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecC----------CCC
Q 036689 254 LTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVG----------LPE 323 (595)
Q Consensus 254 L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~----------~~~ 323 (595)
|++|++++|. +++......+..+++|++|++.++ +.......... .+++|++|++.+ |..
T Consensus 295 L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~-------~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 295 IRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQ-------YCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp CCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHH-------HCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred CcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHH-------hCCCCCEEEeecCccccccccccCc
Confidence 9999999886 554333345688999999999844 32221111111 278999999995 666
Q ss_pred cccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCC---CCeec
Q 036689 324 LKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGK---DIRMI 400 (595)
Q Consensus 324 l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~---~~~~~ 400 (595)
+...........+++|++|.+ .|..++..... .+...+++|++|+++++ ..++.
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~----------------------~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAV-YVSDITNESLE----------------------SIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH----------------------HHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred cCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH----------------------HHHhhCCCCcEEEEeecCCCccccC
Confidence 654322111223789999999 45555432110 11234889999999753 33321
Q ss_pred cCC----CCCcccccCceeEEeeccccccccccCccccccCCCCc-cccCCccEEeEeCCCCCcccccchHHhhcccccE
Q 036689 401 WHG----DFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSS-VSFRNLKILEVSGCKKLTNLVASSAAQSLVALVK 475 (595)
Q Consensus 401 ~~~----~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 475 (595)
.+. ......+++|+.|++..+. ..+.......+ ..+++|+.|++++|+ +++.....++..+++|++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~--------~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQ--------GGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCG--------GGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCE
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCC--------CCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCe
Confidence 100 0012357889999995322 11222111122 237899999999864 665333456678999999
Q ss_pred EEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCC
Q 036689 476 MQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGC 539 (595)
Q Consensus 476 L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C 539 (595)
|++++|. ++....... ...+++|+.|++++|+ ++..........+|.+....+...
T Consensus 493 L~l~~n~-l~~~~~~~~------~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 493 LEMRGCC-FSERAIAAA------VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEESCC-CBHHHHHHH------HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeccCCC-CcHHHHHHH------HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 9999998 543211111 0138999999999986 665433333345788877777653
No 43
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.2e-21 Score=214.14 Aligned_cols=147 Identities=11% Similarity=0.063 Sum_probs=83.3
Q ss_pred ccccccEEEeccCCCCcccccc-------------ccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEecc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFD-------------LDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLY 86 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~-------------~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~ 86 (595)
.+++|+.|++.++....+.... .....+++|++|+|++| .++..... .....+++|++|++.
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~----~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLE----LIAKSFKNFKVLVLS 138 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHH----HHHHHCTTCCEEEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHH----HHHHhCCCCcEEeCC
Confidence 6788888888887654332210 11256788888888887 34321100 011257888888888
Q ss_pred CccCccccccccccccCCCCccEEEecCCCCcccccc---hhhhhcCCCCcEEEEcccCCcceeecccCccccccccccc
Q 036689 87 NLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL---LSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIE 163 (595)
Q Consensus 87 ~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 163 (595)
+|..+..... +.....+++|++|++++|. +++... ......+++|++|++++|. ..+.. .....-...
T Consensus 139 ~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~-----~~l~~l~~~ 209 (594)
T 2p1m_B 139 SCEGFSTDGL-AAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSF-----SALERLVTR 209 (594)
T ss_dssp SCEEEEHHHH-HHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCH-----HHHHHHHHH
T ss_pred CcCCCCHHHH-HHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCH-----HHHHHHHHh
Confidence 8755544210 1113467888888888875 443221 1233467788888888765 11110 000011223
Q ss_pred ccccceEecCCCCCccc
Q 036689 164 FGQLSTLCLGSLPELTS 180 (595)
Q Consensus 164 ~~~L~~L~l~~~~~l~~ 180 (595)
+++|++|++++|..+..
T Consensus 210 ~~~L~~L~L~~~~~~~~ 226 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEK 226 (594)
T ss_dssp CTTCCEEECCTTSCHHH
T ss_pred CCCCcEEecCCCCcHHH
Confidence 67888888887755544
No 44
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=2.6e-21 Score=211.56 Aligned_cols=188 Identities=15% Similarity=0.233 Sum_probs=115.2
Q ss_pred ccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEec-CCCCCCC--------cCCcCCCccEEeccCccCcccc
Q 036689 24 VEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIV-DSKERVP--------LDDAFPILESLNLYNLIKLERI 94 (595)
Q Consensus 24 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~-~~~~~~~--------~~~~~~~L~~L~l~~~~~l~~~ 94 (595)
.+.+++.++.... +.....++++|++|.+.+++.+..+. ....|.. ....+++|++|+++++ .+...
T Consensus 45 ~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~ 120 (594)
T 2p1m_B 45 RRKVFIGNCYAVS---PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDD 120 (594)
T ss_dssp CCEEEESSTTSSC---HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHH
T ss_pred ceEEeeccccccC---HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHH
Confidence 3466666654421 22223789999999999987554221 0112211 1246789999999997 34432
Q ss_pred cccccccc-CCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecC
Q 036689 95 CQDRLSVQ-SFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLG 173 (595)
Q Consensus 95 ~~~~~~~~-~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 173 (595)
... .+. .+++|++|++++|..++.......+.++++|++|++++|. +..... .....-...+++|++|+++
T Consensus 121 ~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~-----~~l~~~~~~~~~L~~L~l~ 192 (594)
T 2p1m_B 121 CLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSG-----HWLSHFPDTYTSLVSLNIS 192 (594)
T ss_dssp HHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCG-----GGGGGSCTTCCCCCEEECT
T ss_pred HHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcch-----HHHHHHhhcCCcCcEEEec
Confidence 111 132 5899999999999777663333566689999999999976 332110 0111122256789999998
Q ss_pred CCC-CccccccccccccccccccccccCccccccccccCCCccccc-cccCCccceeecccc-cceeecccCCCcccccc
Q 036689 174 SLP-ELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNE-KVALSNLEVLEMNKV-NIEKIWHNQLPVAMFLC 250 (595)
Q Consensus 174 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~ 250 (595)
++. .+..- .+.. ...+++|++|++++| .+..+ +..+ ..
T Consensus 193 ~~~~~~~~~---------------------------------~l~~l~~~~~~L~~L~L~~~~~~~~l-----~~~~-~~ 233 (594)
T 2p1m_B 193 CLASEVSFS---------------------------------ALERLVTRCPNLKSLKLNRAVPLEKL-----ATLL-QR 233 (594)
T ss_dssp TCCSCCCHH---------------------------------HHHHHHHHCTTCCEEECCTTSCHHHH-----HHHH-HH
T ss_pred ccCCcCCHH---------------------------------HHHHHHHhCCCCcEEecCCCCcHHHH-----HHHH-hc
Confidence 875 11110 0111 123688999999988 55543 4444 56
Q ss_pred CCCccEEEEecC
Q 036689 251 FQNLTRLILRKC 262 (595)
Q Consensus 251 l~~L~~L~L~~c 262 (595)
+++|+.|++..|
T Consensus 234 ~~~L~~L~l~~~ 245 (594)
T 2p1m_B 234 APQLEELGTGGY 245 (594)
T ss_dssp CTTCSEEECSBC
T ss_pred CCcceEcccccc
Confidence 889999987655
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.1e-17 Score=168.84 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=27.9
Q ss_pred CCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689 78 PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN 140 (595)
Q Consensus 78 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 140 (595)
++|++|+++++ .+..+.. ..+..+++|++|++++| .++.+++ ..++++++|++|++++
T Consensus 54 ~~l~~L~l~~n-~i~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRK--DDFKGLQHLYALVLVNN-KISKIHE-KAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTCCEEECCSS-CCCEECT--TTTTTCTTCCEEECCSS-CCCEECG-GGSTTCTTCCEEECCS
T ss_pred CCCeEEECCCC-cCCccCH--hHhhCCCCCcEEECCCC-ccCccCH-hHhhCcCCCCEEECCC
Confidence 45555555553 3443321 12445555555555553 3444322 3445555555555555
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=7e-18 Score=170.23 Aligned_cols=247 Identities=17% Similarity=0.202 Sum_probs=137.7
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+++|++|++++|.++.+. |..+ ..+++|++|+++++ .++.++.. ..++|++|+++++. ++.++...+.
T Consensus 76 ~l~~L~~L~L~~n~l~~~~----~~~~-~~l~~L~~L~L~~n-~l~~l~~~----~~~~L~~L~l~~n~-i~~~~~~~~~ 144 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIH----EKAF-SPLRKLQKLYISKN-HLVEIPPN----LPSSLVELRIHDNR-IRKVPKGVFS 144 (332)
T ss_dssp TCTTCCEEECCSSCCCEEC----GGGS-TTCTTCCEEECCSS-CCCSCCSS----CCTTCCEEECCSSC-CCCCCSGGGS
T ss_pred CCCCCcEEECCCCccCccC----HhHh-hCcCCCCEEECCCC-cCCccCcc----ccccCCEEECCCCc-cCccCHhHhC
Confidence 3566777777777666552 2222 45677777777764 45544331 12667777777776 6655542222
Q ss_pred CCCCCCCcCCCcccEEeecCCCCccc--ccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCC
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKC--LYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLF 378 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~--~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 378 (595)
. +++|++|+++++. +.. ....... .+ +|+.|+++++. ++.+|.
T Consensus 145 ~--------l~~L~~L~l~~n~-l~~~~~~~~~~~-~l-~L~~L~l~~n~-l~~l~~----------------------- 189 (332)
T 2ft3_A 145 G--------LRNMNCIEMGGNP-LENSGFEPGAFD-GL-KLNYLRISEAK-LTGIPK----------------------- 189 (332)
T ss_dssp S--------CSSCCEEECCSCC-CBGGGSCTTSSC-SC-CCSCCBCCSSB-CSSCCS-----------------------
T ss_pred C--------CccCCEEECCCCc-cccCCCCccccc-CC-ccCEEECcCCC-CCccCc-----------------------
Confidence 2 6677777777643 221 1111111 12 56666666553 333443
Q ss_pred CcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCC
Q 036689 379 LPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKL 458 (595)
Q Consensus 379 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l 458 (595)
...++|++|++++|.. ..+++..+..+++|+.|++++ +.+
T Consensus 190 ---~~~~~L~~L~l~~n~i------------------------------------~~~~~~~l~~l~~L~~L~L~~-N~l 229 (332)
T 2ft3_A 190 ---DLPETLNELHLDHNKI------------------------------------QAIELEDLLRYSKLYRLGLGH-NQI 229 (332)
T ss_dssp ---SSCSSCSCCBCCSSCC------------------------------------CCCCTTSSTTCTTCSCCBCCS-SCC
T ss_pred ---cccCCCCEEECCCCcC------------------------------------CccCHHHhcCCCCCCEEECCC-CcC
Confidence 1225566666666543 333333555667777777776 455
Q ss_pred cccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccc-----cCCCccE
Q 036689 459 TNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIF-----KFPSLEV 533 (595)
Q Consensus 459 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~~~L~~ 533 (595)
+.+++ ..+..+++|++|++++|. ++.++..... +++|+.|+++++ .++.++...+.. ..+.|+.
T Consensus 230 ~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~l~~--------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 230 RMIEN-GSLSFLPTLRELHLDNNK-LSRVPAGLPD--------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp CCCCT-TGGGGCTTCCEEECCSSC-CCBCCTTGGG--------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred CcCCh-hHhhCCCCCCEEECCCCc-CeecChhhhc--------CccCCEEECCCC-CCCccChhHccccccccccccccc
Confidence 55533 334667777777777765 6566544332 677777777774 566665443221 1466888
Q ss_pred EEEeCCCCc--cccCCCCCCCCCcceEEeccCC
Q 036689 534 LFVVGCPKM--NIFTTGELSTPPRVDVMYRNRG 564 (595)
Q Consensus 534 L~l~~C~~l--~~lp~~~~~~~~L~~l~i~~~~ 564 (595)
|++.++|.. ...|..+..+++|+.++++++.
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 888887643 2234455668888888887653
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=3.6e-17 Score=164.85 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=40.1
Q ss_pred CCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhh
Q 036689 49 QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK 128 (595)
Q Consensus 49 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~ 128 (595)
++++++++++ +++.++. ...+++++|+++++ +++.+... .+..+++|++|++++| .++.+.+ ..++
T Consensus 32 ~l~~l~~~~~-~l~~lp~--------~~~~~l~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~-~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPK--------DLPPDTALLDLQNN-KITEIKDG--DFKNLKNLHTLILINN-KISKISP-GAFA 97 (330)
T ss_dssp ETTEEECTTS-CCCSCCC--------SCCTTCCEEECCSS-CCCCBCTT--TTTTCTTCCEEECCSS-CCCCBCT-TTTT
T ss_pred CCeEEEecCC-CccccCc--------cCCCCCeEEECCCC-cCCEeChh--hhccCCCCCEEECCCC-cCCeeCH-HHhc
Confidence 5566666555 3443321 12245666666664 45444221 2455666666666663 4444422 4455
Q ss_pred cCCCCcEEEEcc
Q 036689 129 CLPRLERIAVIN 140 (595)
Q Consensus 129 ~l~~L~~L~l~~ 140 (595)
++++|++|++++
T Consensus 98 ~l~~L~~L~Ls~ 109 (330)
T 1xku_A 98 PLVKLERLYLSK 109 (330)
T ss_dssp TCTTCCEEECCS
T ss_pred CCCCCCEEECCC
Confidence 566666666665
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=5.8e-17 Score=163.30 Aligned_cols=273 Identities=14% Similarity=0.084 Sum_probs=144.6
Q ss_pred cccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+++++|+++++... .+++ .+ +.+++|++|++++| .++.+.+. .+..+++|++|+++++ .++.+..
T Consensus 51 ~~~l~~L~L~~n~i~-~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~l~~--- 117 (330)
T 1xku_A 51 PPDTALLDLQNNKIT-EIKDGDF--KNLKNLHTLILINN-KISKISPG-----AFAPLVKLERLYLSKN-QLKELPE--- 117 (330)
T ss_dssp CTTCCEEECCSSCCC-CBCTTTT--TTCTTCCEEECCSS-CCCCBCTT-----TTTTCTTCCEEECCSS-CCSBCCS---
T ss_pred CCCCeEEECCCCcCC-EeChhhh--ccCCCCCEEECCCC-cCCeeCHH-----HhcCCCCCCEEECCCC-cCCccCh---
Confidence 356667777666542 3322 23 56677777777666 45544332 3455667777777764 4554421
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
..+++|++|++++| .++..++ ..+.++++|++|++++|..- ... ........+++|+.|+++++. +.
T Consensus 118 --~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~-------~~~~~~~~l~~L~~L~l~~n~-l~ 184 (330)
T 1xku_A 118 --KMPKTLQELRVHEN-EITKVRK-SVFNGLNQMIVVELGTNPLK-SSG-------IENGAFQGMKKLSYIRIADTN-IT 184 (330)
T ss_dssp --SCCTTCCEEECCSS-CCCBBCH-HHHTTCTTCCEEECCSSCCC-GGG-------BCTTGGGGCTTCCEEECCSSC-CC
T ss_pred --hhcccccEEECCCC-cccccCH-hHhcCCccccEEECCCCcCC-ccC-------cChhhccCCCCcCEEECCCCc-cc
Confidence 22366777777764 4554443 45666777777777664321 100 000123345666666666543 22
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
.++.. ..++|++|++++|.++.+. |..+ ..+++|+.|++
T Consensus 185 ~l~~~------------------------------------~~~~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~L 223 (330)
T 1xku_A 185 TIPQG------------------------------------LPPSLTELHLDGNKITKVD----AASL-KGLNNLAKLGL 223 (330)
T ss_dssp SCCSS------------------------------------CCTTCSEEECTTSCCCEEC----TGGG-TTCTTCCEEEC
T ss_pred cCCcc------------------------------------ccccCCEEECCCCcCCccC----HHHh-cCCCCCCEEEC
Confidence 21110 1256777777777666552 2222 45677777777
Q ss_pred ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCc-----cc
Q 036689 260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMH-----TS 334 (595)
Q Consensus 260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~-----~~ 334 (595)
+++ .++.+.+ ..+..+++|++|++++|. ++.++. .. ..+++|++|+++++. +..++.... ..
T Consensus 224 s~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~-~l--------~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 224 SFN-SISAVDN-GSLANTPHLRELHLNNNK-LVKVPG-GL--------ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNT 290 (330)
T ss_dssp CSS-CCCEECT-TTGGGSTTCCEEECCSSC-CSSCCT-TT--------TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCT
T ss_pred CCC-cCceeCh-hhccCCCCCCEEECCCCc-CccCCh-hh--------ccCCCcCEEECCCCc-CCccChhhcCCccccc
Confidence 764 4555433 234667777777777776 665543 11 126777777777743 444433221 11
Q ss_pred cCcccceeeecCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCC
Q 036689 335 EWPALKLLDVSACDQVT-VFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKD 396 (595)
Q Consensus 335 ~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 396 (595)
..+.|+.|++.+++... .+++ ..+..+++++.+++++|+
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~-----------------------~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQP-----------------------STFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCG-----------------------GGGTTCCCGGGEEC----
T ss_pred ccccccceEeecCcccccccCc-----------------------cccccccceeEEEecccC
Confidence 24566777777665321 1222 224567778888887763
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=1.8e-17 Score=166.61 Aligned_cols=234 Identities=18% Similarity=0.209 Sum_probs=173.4
Q ss_pred ccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchh
Q 036689 46 GFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLS 125 (595)
Q Consensus 46 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~ 125 (595)
..+++++|+|+++ .++.+++ ....+++|++|+++++ .+..+ +..++.+++|++|++++| .++.+| .
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~------~l~~l~~L~~L~L~~n-~l~~l---p~~~~~l~~L~~L~Ls~n-~l~~lp--~ 144 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPD------QAFRLSHLQHMTIDAA-GLMEL---PDTMQQFAGLETLTLARN-PLRALP--A 144 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCS------CGGGGTTCSEEEEESS-CCCCC---CSCGGGGTTCSEEEEESC-CCCCCC--G
T ss_pred cccceeEEEccCC-CchhcCh------hhhhCCCCCEEECCCC-Cccch---hHHHhccCCCCEEECCCC-ccccCc--H
Confidence 3478888999887 6665532 3455888999999885 66655 344788899999999985 666665 5
Q ss_pred hhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccc
Q 036689 126 AAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSL 205 (595)
Q Consensus 126 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (595)
.+.++++|++|++++|+.+..++.. +....+
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~----------------~~~~~~--------------------------------- 175 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEP----------------LASTDA--------------------------------- 175 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSC----------------SEEEC----------------------------------
T ss_pred HHhcCcCCCEEECCCCCCccccChh----------------Hhhccc---------------------------------
Confidence 6888999999999998877766532 111100
Q ss_pred cccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEe
Q 036689 206 EDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEI 285 (595)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l 285 (595)
......+++|++|++++|.++.+ |.++ ..+++|++|+++++ .++.+++ .++.+++|++|++
T Consensus 176 ----------~~~~~~l~~L~~L~L~~n~l~~l-----p~~l-~~l~~L~~L~L~~N-~l~~l~~--~l~~l~~L~~L~L 236 (328)
T 4fcg_A 176 ----------SGEHQGLVNLQSLRLEWTGIRSL-----PASI-ANLQNLKSLKIRNS-PLSALGP--AIHHLPKLEELDL 236 (328)
T ss_dssp ----------CCCEEESTTCCEEEEEEECCCCC-----CGGG-GGCTTCCEEEEESS-CCCCCCG--GGGGCTTCCEEEC
T ss_pred ----------hhhhccCCCCCEEECcCCCcCcc-----hHhh-cCCCCCCEEEccCC-CCCcCch--hhccCCCCCEEEC
Confidence 01112478899999999988755 7665 68999999999986 5666544 3689999999999
Q ss_pred ecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCC
Q 036689 286 RYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSE 365 (595)
Q Consensus 286 ~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~ 365 (595)
++|.....++. .+. .+++|++|++++|.....++... ..+++|+.|++++|+.++.+|..
T Consensus 237 s~n~~~~~~p~-~~~--------~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~--------- 296 (328)
T 4fcg_A 237 RGCTALRNYPP-IFG--------GRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSL--------- 296 (328)
T ss_dssp TTCTTCCBCCC-CTT--------CCCCCCEEECTTCTTCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGG---------
T ss_pred cCCcchhhhHH-Hhc--------CCCCCCEEECCCCCchhhcchhh--hcCCCCCEEeCCCCCchhhccHH---------
Confidence 99985554433 222 28999999999998888776653 33899999999999999988873
Q ss_pred CCCCCCCCCCCCCCcCccCCCcceEeccCCC
Q 036689 366 EDKPDIPAQQPLFLPEKVFPNLEELGLDGKD 396 (595)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 396 (595)
+..+++|+.+++..+.
T Consensus 297 ---------------l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 297 ---------------IAQLPANCIILVPPHL 312 (328)
T ss_dssp ---------------GGGSCTTCEEECCGGG
T ss_pred ---------------HhhccCceEEeCCHHH
Confidence 4678889999887653
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=6.1e-20 Score=194.15 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=68.1
Q ss_pred cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
++++++|+++++..... ........+++|++|++++| .++..... ........+++|++|+++++ .+....... -
T Consensus 2 ~~~l~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~~~-~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~-l 76 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDC-GLTEARCK-DISSALRVNPALAELNLRSN-ELGDVGVHC-V 76 (461)
T ss_dssp CEEEEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESS-CCCHHHHH-HHHHHHHTCTTCCEEECTTC-CCHHHHHHH-H
T ss_pred CccceehhhhhcccCch-hHHHHHhhcCCccEEEccCC-CCCHHHHH-HHHHHHHhCCCcCEEeCCCC-cCChHHHHH-H
Confidence 46788888887775332 22211367888999999888 45421000 00012345688888888885 454421100 0
Q ss_pred ccCCC----CccEEEecCCCCcccc---cchhhhhcCCCCcEEEEcccC
Q 036689 101 VQSFN----ELKTIRVELCDQLSNI---FLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 101 ~~~l~----~L~~L~L~~c~~l~~~---~~~~~~~~l~~L~~L~l~~c~ 142 (595)
...++ +|++|++++| .+++. .....+..+++|++|++++|.
T Consensus 77 ~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 12233 6888888886 45531 112566778888888888854
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=3.3e-17 Score=164.72 Aligned_cols=109 Identities=24% Similarity=0.304 Sum_probs=91.0
Q ss_pred CccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccccc
Q 036689 440 SSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSF 519 (595)
Q Consensus 440 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 519 (595)
.+..+++|+.|+++++ .++.+++ .++.+++|++|++++|.....++..... +++|+.|++++|+.+..+
T Consensus 201 ~l~~l~~L~~L~L~~N-~l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~~~~~--------l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNS-PLSALGP--AIHHLPKLEELDLRGCTALRNYPPIFGG--------RAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp GGGGCTTCCEEEEESS-CCCCCCG--GGGGCTTCCEEECTTCTTCCBCCCCTTC--------CCCCCEEECTTCTTCCBC
T ss_pred hhcCCCCCCEEEccCC-CCCcCch--hhccCCCCCEEECcCCcchhhhHHHhcC--------CCCCCEEECCCCCchhhc
Confidence 5667889999999984 5666643 3578899999999998866666554444 899999999999888888
Q ss_pred ccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEec
Q 036689 520 CSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYR 561 (595)
Q Consensus 520 ~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~ 561 (595)
|... ..+++|++|++++|+.++.+|.++.++++|+.+.+.
T Consensus 270 p~~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 270 PLDI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CTTG--GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred chhh--hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 8776 359999999999999999999999999999999987
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.8e-16 Score=166.25 Aligned_cols=247 Identities=20% Similarity=0.159 Sum_probs=164.2
Q ss_pred ccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccC
Q 036689 24 VEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQS 103 (595)
Q Consensus 24 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 103 (595)
.+.++..+... ..++..+ .+++++|+|+++ .++.+.+. .+..+++|++|+++++ .+..+.. ..+..
T Consensus 45 ~~~v~c~~~~l-~~iP~~~----~~~l~~L~L~~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n-~i~~i~~--~~~~~ 110 (440)
T 3zyj_A 45 FSKVICVRKNL-REVPDGI----STNTRLLNLHEN-QIQIIKVN-----SFKHLRHLEILQLSRN-HIRTIEI--GAFNG 110 (440)
T ss_dssp SCEEECCSCCC-SSCCSCC----CTTCSEEECCSC-CCCEECTT-----TTSSCSSCCEEECCSS-CCCEECG--GGGTT
T ss_pred CCEEEeCCCCc-CcCCCCC----CCCCcEEEccCC-cCCeeCHH-----HhhCCCCCCEEECCCC-cCCccCh--hhccC
Confidence 44555444333 4444333 367888888887 67777443 4667788888888885 5665532 23667
Q ss_pred CCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccccc
Q 036689 104 FNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCC 183 (595)
Q Consensus 104 l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 183 (595)
+++|++|++++| .++.+++ ..+..+++|++|++++| .+..++.. ....+++|+.|+++++..+..++.
T Consensus 111 l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~---------~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 111 LANLNTLELFDN-RLTTIPN-GAFVYLSKLKELWLRNN-PIESIPSY---------AFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CSSCCEEECCSS-CCSSCCT-TTSCSCSSCCEEECCSC-CCCEECTT---------TTTTCTTCCEEECCCCTTCCEECT
T ss_pred CccCCEEECCCC-cCCeeCH-hHhhccccCceeeCCCC-cccccCHH---------HhhhCcccCEeCCCCCCCcceeCc
Confidence 888888888884 6676654 56777888888888874 45554421 233567888888887776665432
Q ss_pred ccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCC
Q 036689 184 EVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCP 263 (595)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 263 (595)
. .| ..+++|++|++++|+++.+ |.. ..+++|+.|+++++
T Consensus 179 ~------------------------------~~---~~l~~L~~L~L~~n~l~~~-----~~~--~~l~~L~~L~Ls~N- 217 (440)
T 3zyj_A 179 G------------------------------AF---EGLSNLRYLNLAMCNLREI-----PNL--TPLIKLDELDLSGN- 217 (440)
T ss_dssp T------------------------------TT---TTCSSCCEEECTTSCCSSC-----CCC--TTCSSCCEEECTTS-
T ss_pred c------------------------------hh---hcccccCeecCCCCcCccc-----ccc--CCCcccCEEECCCC-
Confidence 1 11 2477888888888877765 432 46788888888876
Q ss_pred CCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceee
Q 036689 264 KLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLD 343 (595)
Q Consensus 264 ~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~ 343 (595)
.++.+.+. .+..+++|++|+++++. ++.++...+.+ +++|+.|+|+++ .+..++... ...+++|+.|+
T Consensus 218 ~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~ 285 (440)
T 3zyj_A 218 HLSAIRPG-SFQGLMHLQKLWMIQSQ-IQVIERNAFDN--------LQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIH 285 (440)
T ss_dssp CCCEECTT-TTTTCTTCCEEECTTCC-CCEECTTSSTT--------CTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEE
T ss_pred ccCccChh-hhccCccCCEEECCCCc-eeEEChhhhcC--------CCCCCEEECCCC-CCCccChhH-hccccCCCEEE
Confidence 56665443 45788888888888887 77776543333 788888888885 455555432 12368888888
Q ss_pred ecCCCC
Q 036689 344 VSACDQ 349 (595)
Q Consensus 344 l~~c~~ 349 (595)
+.+++.
T Consensus 286 L~~Np~ 291 (440)
T 3zyj_A 286 LHHNPW 291 (440)
T ss_dssp CCSSCE
T ss_pred cCCCCc
Confidence 887653
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=2.5e-16 Score=165.86 Aligned_cols=228 Identities=19% Similarity=0.143 Sum_probs=151.8
Q ss_pred cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689 47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA 126 (595)
Q Consensus 47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~ 126 (595)
.+++++|+|+++ .++.+.+. .+..+++|++|+++++ .+..+.. ..+..+++|++|+++++ .++.+++ ..
T Consensus 74 ~~~l~~L~L~~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n-~i~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~ 142 (452)
T 3zyi_A 74 PSNTRYLNLMEN-NIQMIQAD-----TFRHLHHLEVLQLGRN-SIRQIEV--GAFNGLASLNTLELFDN-WLTVIPS-GA 142 (452)
T ss_dssp CTTCSEEECCSS-CCCEECTT-----TTTTCTTCCEEECCSS-CCCEECT--TTTTTCTTCCEEECCSS-CCSBCCT-TT
T ss_pred CCCccEEECcCC-cCceECHH-----HcCCCCCCCEEECCCC-ccCCcCh--hhccCcccCCEEECCCC-cCCccCh-hh
Confidence 367888888877 67766444 4567788888888875 6665532 23667788888888884 5666554 55
Q ss_pred hhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccccc
Q 036689 127 AKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLE 206 (595)
Q Consensus 127 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (595)
+..+++|++|++++| .+..++.. ....+++|+.|+++++..+..++..
T Consensus 143 ~~~l~~L~~L~L~~N-~l~~~~~~---------~~~~l~~L~~L~l~~~~~l~~i~~~---------------------- 190 (452)
T 3zyi_A 143 FEYLSKLRELWLRNN-PIESIPSY---------AFNRVPSLMRLDLGELKKLEYISEG---------------------- 190 (452)
T ss_dssp SSSCTTCCEEECCSC-CCCEECTT---------TTTTCTTCCEEECCCCTTCCEECTT----------------------
T ss_pred hcccCCCCEEECCCC-CcceeCHh---------HHhcCCcccEEeCCCCCCccccChh----------------------
Confidence 677888888888774 45554421 2335677888888877766654421
Q ss_pred ccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEee
Q 036689 207 DKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIR 286 (595)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~ 286 (595)
.| ..+++|+.|++++|+++.+ |.. ..+++|+.|+++++ .++.+.+. .+.++++|++|+++
T Consensus 191 --------~~---~~l~~L~~L~L~~n~l~~~-----~~~--~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 191 --------AF---EGLFNLKYLNLGMCNIKDM-----PNL--TPLVGLEELEMSGN-HFPEIRPG-SFHGLSSLKKLWVM 250 (452)
T ss_dssp --------TT---TTCTTCCEEECTTSCCSSC-----CCC--TTCTTCCEEECTTS-CCSEECGG-GGTTCTTCCEEECT
T ss_pred --------hc---cCCCCCCEEECCCCccccc-----ccc--cccccccEEECcCC-cCcccCcc-cccCccCCCEEEeC
Confidence 11 2467888888888877665 432 46788888888875 56655443 45788888888888
Q ss_pred cccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCC
Q 036689 287 YCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACD 348 (595)
Q Consensus 287 ~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 348 (595)
+|. ++.+....+.+ +++|+.|+++++ .+..++... ...+++|+.|++.+++
T Consensus 251 ~n~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 251 NSQ-VSLIERNAFDG--------LASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSC-CCEECTTTTTT--------CTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred CCc-CceECHHHhcC--------CCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence 887 77776533332 788888888885 455554432 1236788888888765
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=1.2e-16 Score=168.19 Aligned_cols=229 Identities=18% Similarity=0.168 Sum_probs=176.7
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
..+++++|+|+++......+..+ +.+++|++|+|++| .++.+.+. .+..+++|++|+++++ .++.+...
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~~-- 141 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTF--RHLHHLEVLQLGRN-SIRQIEVG-----AFNGLASLNTLELFDN-WLTVIPSG-- 141 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTT--TTCTTCCEEECCSS-CCCEECTT-----TTTTCTTCCEEECCSS-CCSBCCTT--
T ss_pred CCCCccEEECcCCcCceECHHHc--CCCCCCCEEECCCC-ccCCcChh-----hccCcccCCEEECCCC-cCCccChh--
Confidence 34789999999998743333334 79999999999999 78888554 5678999999999996 77766332
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
.+..+++|++|+++++ .++.++. ..+.++++|++|++++|+.+..++.. ....+++|+.|+++++. +.
T Consensus 142 ~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---------~~~~l~~L~~L~L~~n~-l~ 209 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNN-PIESIPS-YAFNRVPSLMRLDLGELKKLEYISEG---------AFEGLFNLKYLNLGMCN-IK 209 (452)
T ss_dssp TSSSCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---------TTTTCTTCCEEECTTSC-CS
T ss_pred hhcccCCCCEEECCCC-CcceeCH-hHHhcCCcccEEeCCCCCCccccChh---------hccCCCCCCEEECCCCc-cc
Confidence 3678999999999995 6777664 67889999999999999998887632 23457899999998763 32
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
.++ ....+++|+.|++++|.++.+. |.. +..+++|+.|++
T Consensus 210 ~~~-----------------------------------~~~~l~~L~~L~Ls~N~l~~~~----~~~-~~~l~~L~~L~L 249 (452)
T 3zyi_A 210 DMP-----------------------------------NLTPLVGLEELEMSGNHFPEIR----PGS-FHGLSSLKKLWV 249 (452)
T ss_dssp SCC-----------------------------------CCTTCTTCCEEECTTSCCSEEC----GGG-GTTCTTCCEEEC
T ss_pred ccc-----------------------------------cccccccccEEECcCCcCcccC----ccc-ccCccCCCEEEe
Confidence 221 1235789999999999888762 222 267899999999
Q ss_pred ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689 260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 322 (595)
+++ .++.+.+. .+..+++|++|++++|. ++.++...+.. +++|+.|++++++
T Consensus 250 ~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~--------l~~L~~L~L~~Np 301 (452)
T 3zyi_A 250 MNS-QVSLIERN-AFDGLASLVELNLAHNN-LSSLPHDLFTP--------LRYLVELHLHHNP 301 (452)
T ss_dssp TTS-CCCEECTT-TTTTCTTCCEEECCSSC-CSCCCTTSSTT--------CTTCCEEECCSSC
T ss_pred CCC-cCceECHH-HhcCCCCCCEEECCCCc-CCccChHHhcc--------ccCCCEEEccCCC
Confidence 986 56665443 46889999999999997 88877633322 8999999999965
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=5e-16 Score=168.28 Aligned_cols=36 Identities=22% Similarity=0.126 Sum_probs=21.9
Q ss_pred cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc
Q 036689 444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR 482 (595)
Q Consensus 444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 482 (595)
+++|+.|++++| .++.++ ..+..+++|+.|++++|+
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp--~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSS-CCCSCC--GGGGGSCTTCEEECCSCC
T ss_pred cccCcEEeCCCC-CCCcCC--HHHhhccccCEEEecCCC
Confidence 456677777663 555542 224566777777776665
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=165.84 Aligned_cols=280 Identities=17% Similarity=0.126 Sum_probs=190.0
Q ss_pred cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
++.....+.+++.. +.++..+ .++|++|+++++ .++.+++. .+..+++|++|+++++ .++.+.. ..
T Consensus 30 C~~~~~c~~~~~~l-~~iP~~~----~~~L~~L~l~~n-~i~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~~ 95 (353)
T 2z80_A 30 CDRNGICKGSSGSL-NSIPSGL----TEAVKSLDLSNN-RITYISNS-----DLQRCVNLQALVLTSN-GINTIEE--DS 95 (353)
T ss_dssp ECTTSEEECCSTTC-SSCCTTC----CTTCCEEECTTS-CCCEECTT-----TTTTCTTCCEEECTTS-CCCEECT--TT
T ss_pred CCCCeEeeCCCCCc-ccccccc----cccCcEEECCCC-cCcccCHH-----HhccCCCCCEEECCCC-ccCccCH--hh
Confidence 34444455555544 4444433 468999999988 68877543 4677899999999986 6766532 23
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 180 (595)
+..+++|++|++++| .++.+++ ..++++++|++|++++| .+..++.. .....+++|+.|+++++..+..
T Consensus 96 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~--------~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 96 FSSLGSLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGET--------SLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp TTTCTTCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSS--------CSCTTCTTCCEEEEEESSSCCE
T ss_pred cCCCCCCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCch--------hhhccCCCCcEEECCCCccccc
Confidence 678899999999985 6776653 55788999999999985 44444420 1234578899999888765554
Q ss_pred cccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689 181 FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR 260 (595)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~ 260 (595)
+... ....+++|++|++++|.++.+. |..+ ..+++|++|+++
T Consensus 165 ~~~~---------------------------------~~~~l~~L~~L~l~~n~l~~~~----~~~l-~~l~~L~~L~l~ 206 (353)
T 2z80_A 165 IQRK---------------------------------DFAGLTFLEELEIDASDLQSYE----PKSL-KSIQNVSHLILH 206 (353)
T ss_dssp ECTT---------------------------------TTTTCCEEEEEEEEETTCCEEC----TTTT-TTCSEEEEEEEE
T ss_pred cCHH---------------------------------HccCCCCCCEEECCCCCcCccC----HHHH-hccccCCeecCC
Confidence 3321 1125789999999999887663 3333 578999999999
Q ss_pred cCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccc-----ccCCCcccc
Q 036689 261 KCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKC-----LYPGMHTSE 335 (595)
Q Consensus 261 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~ 335 (595)
++ .++.+ +...+..+++|++|++++|. ++.++...... ....+.++.+++.++. +.. ++.. ...
T Consensus 207 ~n-~l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~-----~~~~~~l~~l~L~~~~-l~~~~l~~l~~~--l~~ 275 (353)
T 2z80_A 207 MK-QHILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELST-----GETNSLIKKFTFRNVK-ITDESLFQVMKL--LNQ 275 (353)
T ss_dssp CS-CSTTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC-----------CCCCCCEEEEESCB-CCHHHHHHHHHH--HHT
T ss_pred CC-ccccc-hhhhhhhcccccEEECCCCc-ccccccccccc-----ccccchhhcccccccc-ccCcchhhhHHH--Hhc
Confidence 86 45654 33456779999999999998 77654422111 1125678888888754 221 2211 123
Q ss_pred CcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCe
Q 036689 336 WPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIR 398 (595)
Q Consensus 336 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 398 (595)
+++|+.|+++++ .++.+|. ..++.+++|++|++++|+..
T Consensus 276 l~~L~~L~Ls~N-~l~~i~~-----------------------~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 276 ISGLLELEFSRN-QLKSVPD-----------------------GIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CTTCCEEECCSS-CCCCCCT-----------------------TTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCEEECCCC-CCCccCH-----------------------HHHhcCCCCCEEEeeCCCcc
Confidence 789999999987 4556776 33467899999999999754
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=9.9e-17 Score=160.19 Aligned_cols=257 Identities=14% Similarity=0.080 Sum_probs=179.7
Q ss_pred ccccEEEeccCCCCc--cccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 22 KDVEYLCLDKSQDVK--NVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 22 ~~L~~L~L~~~~~~~--~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+++.|+++++...+ .++..+ +.+++|++|+++++..+....+. .+..+++|++|+++++ .+... .+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l--~~l~~L~~L~L~~~n~l~~~~p~-----~l~~l~~L~~L~Ls~n-~l~~~--~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPP-----AIAKLTQLHYLYITHT-NVSGA--IPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCG-----GGGGCTTCSEEEEEEE-CCEEE--CCG
T ss_pred ceEEEEECCCCCccCCcccChhH--hCCCCCCeeeCCCCCcccccCCh-----hHhcCCCCCEEECcCC-eeCCc--CCH
Confidence 689999999998865 555555 88999999999952256533233 4678899999999996 66532 133
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccccccc-ccceEecCCCCCc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFG-QLSTLCLGSLPEL 178 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l 178 (595)
.+..+++|++|++++| .++...+ ..+..+++|++|++++|.....++. ....++ +|+.|+++++.--
T Consensus 120 ~~~~l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----------~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYN-ALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----------SYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp GGGGCTTCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----------GGGCCCTTCCEEECCSSEEE
T ss_pred HHhCCCCCCEEeCCCC-ccCCcCC-hHHhcCCCCCeEECcCCcccCcCCH----------HHhhhhhcCcEEECcCCeee
Confidence 4788999999999995 5664333 6778899999999999654435442 334455 8899998876422
Q ss_pred cccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEE
Q 036689 179 TSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLI 258 (595)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 258 (595)
...+. .+ ..++ |+.|++++|.++... |..+ ..+++|+.|+
T Consensus 188 ~~~~~-------------------------------~~---~~l~-L~~L~Ls~N~l~~~~----~~~~-~~l~~L~~L~ 227 (313)
T 1ogq_A 188 GKIPP-------------------------------TF---ANLN-LAFVDLSRNMLEGDA----SVLF-GSDKNTQKIH 227 (313)
T ss_dssp EECCG-------------------------------GG---GGCC-CSEEECCSSEEEECC----GGGC-CTTSCCSEEE
T ss_pred ccCCh-------------------------------HH---hCCc-ccEEECcCCcccCcC----CHHH-hcCCCCCEEE
Confidence 22111 11 1244 999999999877552 3333 5789999999
Q ss_pred EecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcc
Q 036689 259 LRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPA 338 (595)
Q Consensus 259 L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 338 (595)
++++ .++..++. +..+++|++|++++|. +++..+..+.. +++|+.|+++++.-...++.. ..+++
T Consensus 228 L~~N-~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~ip~~---~~l~~ 292 (313)
T 1ogq_A 228 LAKN-SLAFDLGK--VGLSKNLNGLDLRNNR-IYGTLPQGLTQ--------LKFLHSLNVSFNNLCGEIPQG---GNLQR 292 (313)
T ss_dssp CCSS-EECCBGGG--CCCCTTCCEEECCSSC-CEECCCGGGGG--------CTTCCEEECCSSEEEEECCCS---TTGGG
T ss_pred CCCC-ceeeecCc--ccccCCCCEEECcCCc-ccCcCChHHhc--------CcCCCEEECcCCcccccCCCC---ccccc
Confidence 9986 45443332 5778999999999998 76444323322 899999999997644455443 34889
Q ss_pred cceeeecCCCCcccccc
Q 036689 339 LKLLDVSACDQVTVFDS 355 (595)
Q Consensus 339 L~~L~l~~c~~l~~l~~ 355 (595)
|+.+++.+++.+...|.
T Consensus 293 L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 293 FDVSAYANNKCLCGSPL 309 (313)
T ss_dssp SCGGGTCSSSEEESTTS
T ss_pred cChHHhcCCCCccCCCC
Confidence 99999999887665443
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=8.4e-17 Score=163.75 Aligned_cols=256 Identities=19% Similarity=0.143 Sum_probs=144.9
Q ss_pred CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689 223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD 302 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 302 (595)
++|++|++++|+++.+ +...+..+++|++|+++++ .++.+.+. .+.++++|++|++++|. ++.++...+..
T Consensus 52 ~~L~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~- 122 (353)
T 2z80_A 52 EAVKSLDLSNNRITYI-----SNSDLQRCVNLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYNY-LSNLSSSWFKP- 122 (353)
T ss_dssp TTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CSSCCHHHHTT-
T ss_pred ccCcEEECCCCcCccc-----CHHHhccCCCCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCCc-CCcCCHhHhCC-
Confidence 3566666666655554 2211134566666666654 34443322 24556666666666655 55444321211
Q ss_pred CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689 303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK 382 (595)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 382 (595)
+++|++|+++++ .+..++.......+++|+.|+++++..++.++. ..+.
T Consensus 123 -------l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----------------------~~~~ 171 (353)
T 2z80_A 123 -------LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-----------------------KDFA 171 (353)
T ss_dssp -------CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----------------------TTTT
T ss_pred -------CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCH-----------------------HHcc
Confidence 556666666653 233333211112245555555555544443333 1123
Q ss_pred cCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccc
Q 036689 383 VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLV 462 (595)
Q Consensus 383 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 462 (595)
.+++|++|++++|. +....+..+..+++|+.|+++++ .++.+
T Consensus 172 ~l~~L~~L~l~~n~------------------------------------l~~~~~~~l~~l~~L~~L~l~~n-~l~~~- 213 (353)
T 2z80_A 172 GLTFLEELEIDASD------------------------------------LQSYEPKSLKSIQNVSHLILHMK-QHILL- 213 (353)
T ss_dssp TCCEEEEEEEEETT------------------------------------CCEECTTTTTTCSEEEEEEEECS-CSTTH-
T ss_pred CCCCCCEEECCCCC------------------------------------cCccCHHHHhccccCCeecCCCC-ccccc-
Confidence 44455555554443 34444556777889999999984 56665
Q ss_pred cchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc----cccccccCcccccCCCccEEEEeC
Q 036689 463 ASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD----SLTSFCSGNYIFKFPSLEVLFVVG 538 (595)
Q Consensus 463 ~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~----~l~~l~~~~~~~~~~~L~~L~l~~ 538 (595)
+..++..+++|++|+++++. ++.+....... ....+.++.+++.++. .+..++... ..+++|++|++++
T Consensus 214 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~----~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 214 LEIFVDVTSSVECLELRDTD-LDTFHFSELST----GETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFSR 286 (353)
T ss_dssp HHHHHHHTTTEEEEEEESCB-CTTCCCC----------CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTTCCEEECCS
T ss_pred hhhhhhhcccccEEECCCCc-ccccccccccc----ccccchhhccccccccccCcchhhhHHHH--hcccCCCEEECCC
Confidence 34455678999999999986 65543322110 0023445555555531 233455433 3489999999999
Q ss_pred CCCccccCCCC-CCCCCcceEEeccCC
Q 036689 539 CPKMNIFTTGE-LSTPPRVDVMYRNRG 564 (595)
Q Consensus 539 C~~l~~lp~~~-~~~~~L~~l~i~~~~ 564 (595)
| +++.+|.+. .++++|+++++++|.
T Consensus 287 N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 287 N-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 7 788999875 789999999999754
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1.6e-15 Score=164.29 Aligned_cols=160 Identities=20% Similarity=0.166 Sum_probs=99.6
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
+++|++|++++|.++.+ |. .+++|+.|+++++ .++.++ ..+++|++|++++|. ++.++..
T Consensus 140 l~~L~~L~Ls~N~l~~l-----~~----~~~~L~~L~L~~N-~l~~l~-----~~~~~L~~L~Ls~N~-l~~l~~~---- 199 (622)
T 3g06_A 140 PPGLQELSVSDNQLASL-----PA----LPSELCKLWAYNN-QLTSLP-----MLPSGLQELSVSDNQ-LASLPTL---- 199 (622)
T ss_dssp CTTCCEEECCSSCCSCC-----CC----CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCCC----
T ss_pred CCCCCEEECcCCcCCCc-----CC----ccCCCCEEECCCC-CCCCCc-----ccCCCCcEEECCCCC-CCCCCCc----
Confidence 36677777777766654 43 2567788888764 455543 345778888888776 6655431
Q ss_pred CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689 302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE 381 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 381 (595)
+++|+.|++.++ .+..++.. +++|+.|+++++ .++.+|.
T Consensus 200 --------~~~L~~L~L~~N-~l~~l~~~-----~~~L~~L~Ls~N-~L~~lp~-------------------------- 238 (622)
T 3g06_A 200 --------PSELYKLWAYNN-RLTSLPAL-----PSGLKELIVSGN-RLTSLPV-------------------------- 238 (622)
T ss_dssp --------CTTCCEEECCSS-CCSSCCCC-----CTTCCEEECCSS-CCSCCCC--------------------------
T ss_pred --------cchhhEEECcCC-cccccCCC-----CCCCCEEEccCC-ccCcCCC--------------------------
Confidence 567788887774 34444432 567777777766 3444443
Q ss_pred ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689 382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL 461 (595)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 461 (595)
.+++|++|++++|....+.. .+++|+.|+++ .+.+..++. .+..+++|+.|+++++ .++..
T Consensus 239 -~l~~L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls----------~N~L~~lp~-~l~~l~~L~~L~L~~N-~l~~~ 299 (622)
T 3g06_A 239 -LPSELKELMVSGNRLTSLPM------LPSGLLSLSVY----------RNQLTRLPE-SLIHLSSETTVNLEGN-PLSER 299 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCCC------CCTTCCEEECC----------SSCCCSCCG-GGGGSCTTCEEECCSC-CCCHH
T ss_pred -CCCcCcEEECCCCCCCcCCc------ccccCcEEeCC----------CCCCCcCCH-HHhhccccCEEEecCC-CCCCc
Confidence 45777778877775443211 45677777773 345555543 5667777888888774 34443
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=1.3e-16 Score=159.39 Aligned_cols=251 Identities=14% Similarity=0.080 Sum_probs=144.9
Q ss_pred CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689 223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD 302 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 302 (595)
.+++.|++++++++.. ..+|..+ ..+++|++|++++++.+....+. .++++++|++|+++++. ++...+..+..
T Consensus 50 ~~l~~L~L~~~~l~~~--~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~- 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP--YPIPSSL-ANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTN-VSGAIPDFLSQ- 123 (313)
T ss_dssp CCEEEEEEECCCCSSC--EECCGGG-GGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEEC-CEEECCGGGGG-
T ss_pred ceEEEEECCCCCccCC--cccChhH-hCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCe-eCCcCCHHHhC-
Confidence 5788999999877630 0125554 67899999999975566654443 35889999999999987 76444323332
Q ss_pred CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689 303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK 382 (595)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 382 (595)
+++|++|+++++.-...++... ..+++|++|+++++.....+|.. +.
T Consensus 124 -------l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~------------------------l~ 170 (313)
T 1ogq_A 124 -------IKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDS------------------------YG 170 (313)
T ss_dssp -------CTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGG------------------------GG
T ss_pred -------CCCCCEEeCCCCccCCcCChHH--hcCCCCCeEECcCCcccCcCCHH------------------------Hh
Confidence 8899999998854322333222 23788888888887644455551 23
Q ss_pred cCC-CcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689 383 VFP-NLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL 461 (595)
Q Consensus 383 ~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 461 (595)
.++ +|++|++++|......+ ..+..++ |+.|+++++ .++..
T Consensus 171 ~l~~~L~~L~L~~N~l~~~~~------------------------------------~~~~~l~-L~~L~Ls~N-~l~~~ 212 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGKIP------------------------------------PTFANLN-LAFVDLSRN-MLEGD 212 (313)
T ss_dssp CCCTTCCEEECCSSEEEEECC------------------------------------GGGGGCC-CSEEECCSS-EEEEC
T ss_pred hhhhcCcEEECcCCeeeccCC------------------------------------hHHhCCc-ccEEECcCC-cccCc
Confidence 455 78888888876543221 1222333 555666552 33333
Q ss_pred ccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCC
Q 036689 462 VASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPK 541 (595)
Q Consensus 462 ~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~ 541 (595)
.+ ..+..+++|++|+++++. +...+.... .+++|+.|+++++.--..+|... ..+++|++|++++|+-
T Consensus 213 ~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 213 AS-VLFGSDKNTQKIHLAKNS-LAFDLGKVG--------LSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CG-GGCCTTSCCSEEECCSSE-ECCBGGGCC--------CCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEE
T ss_pred CC-HHHhcCCCCCEEECCCCc-eeeecCccc--------ccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcc
Confidence 22 233455666666665554 332222221 25566666666643222444333 2356666666666533
Q ss_pred ccccCCCCCCCCCcceEEeccC
Q 036689 542 MNIFTTGELSTPPRVDVMYRNR 563 (595)
Q Consensus 542 l~~lp~~~~~~~~L~~l~i~~~ 563 (595)
-..+|.. .++++|+.+++.+|
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSS
T ss_pred cccCCCC-ccccccChHHhcCC
Confidence 3345554 44666666666544
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=5.7e-16 Score=162.53 Aligned_cols=228 Identities=19% Similarity=0.190 Sum_probs=164.3
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
.++++.|++++|+++.+....+ ..+++|++|+++++ .++.+.+ ..+.++++|++|++++|. ++.++...+..
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 134 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSF-----KHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNR-LTTIPNGAFVY 134 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTT-----SSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred CCCCcEEEccCCcCCeeCHHHh-----hCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence 3678889999988887732222 56889999999875 5666543 356888999999999887 87776533333
Q ss_pred CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689 302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE 381 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 381 (595)
+++|++|+++++. +..++... ...+++|+.|++++|..++.++. ..+
T Consensus 135 --------l~~L~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~-----------------------~~~ 181 (440)
T 3zyj_A 135 --------LSKLKELWLRNNP-IESIPSYA-FNRIPSLRRLDLGELKRLSYISE-----------------------GAF 181 (440)
T ss_dssp --------CSSCCEEECCSCC-CCEECTTT-TTTCTTCCEEECCCCTTCCEECT-----------------------TTT
T ss_pred --------cccCceeeCCCCc-ccccCHHH-hhhCcccCEeCCCCCCCcceeCc-----------------------chh
Confidence 8899999998854 55554432 22378899999998888877776 335
Q ss_pred ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689 382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL 461 (595)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 461 (595)
..+++|++|++++|....+. ....+++|+.|++ +.+.+..+.+..+..+++|+.|++++ +.++.+
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~L----------s~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 246 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIP----NLTPLIKLDELDL----------SGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVI 246 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCC----CCTTCSSCCEEEC----------TTSCCCEECTTTTTTCTTCCEEECTT-CCCCEE
T ss_pred hcccccCeecCCCCcCcccc----ccCCCcccCEEEC----------CCCccCccChhhhccCccCCEEECCC-CceeEE
Confidence 67888999999888755432 2456778888888 44567777777788888899999888 567766
Q ss_pred ccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc
Q 036689 462 VASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD 514 (595)
Q Consensus 462 ~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (595)
.+ ..+..+++|++|+++++. ++.++..... .+++|+.|++++++
T Consensus 247 ~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 247 ER-NAFDNLQSLVEINLAHNN-LTLLPHDLFT-------PLHHLERIHLHHNP 290 (440)
T ss_dssp CT-TSSTTCTTCCEEECTTSC-CCCCCTTTTS-------SCTTCCEEECCSSC
T ss_pred Ch-hhhcCCCCCCEEECCCCC-CCccChhHhc-------cccCCCEEEcCCCC
Confidence 43 445778889999998886 7776654433 47888888887754
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=7.9e-17 Score=161.27 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=21.8
Q ss_pred CCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689 103 SFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC 141 (595)
Q Consensus 103 ~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 141 (595)
.+++|++|++++| .++..++ ..+..+++|++|++++|
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n 68 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSN 68 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTS
T ss_pred cCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCC
Confidence 4456666666664 4554433 45566666666666664
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=7.5e-19 Score=185.76 Aligned_cols=111 Identities=17% Similarity=0.050 Sum_probs=69.4
Q ss_pred cCCccEEeEeCCCCCccccc---chHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccc---
Q 036689 444 FRNLKILEVSGCKKLTNLVA---SSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLT--- 517 (595)
Q Consensus 444 l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--- 517 (595)
.++|+.|++++|. ++.... ..++..+++|++|++++|. +.+....... +.-....++|+.|++++| .++
T Consensus 312 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~--~~l~~~~~~L~~L~L~~n-~i~~~~ 386 (461)
T 1z7x_W 312 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELC--QGLGQPGSVLRVLWLADC-DVSDSS 386 (461)
T ss_dssp TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHH--HHHTSTTCCCCEEECTTS-CCCHHH
T ss_pred CccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHH--HHHcCCCCceEEEECCCC-CCChhh
Confidence 3689999999975 554311 1344667999999999985 5544221110 000002579999999997 565
Q ss_pred --ccccCcccccCCCccEEEEeCCCCcccc-----CCCC-CCCCCcceEEecc
Q 036689 518 --SFCSGNYIFKFPSLEVLFVVGCPKMNIF-----TTGE-LSTPPRVDVMYRN 562 (595)
Q Consensus 518 --~l~~~~~~~~~~~L~~L~l~~C~~l~~l-----p~~~-~~~~~L~~l~i~~ 562 (595)
.++... ..+++|++|++++|+ ++.. ...+ ...+.|+.+.+.+
T Consensus 387 ~~~l~~~l--~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 387 CSSLAATL--LANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp HHHHHHHH--HHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHH--HhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecc
Confidence 455444 248999999999984 4321 1111 1245788888764
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=3.2e-16 Score=156.85 Aligned_cols=217 Identities=16% Similarity=0.103 Sum_probs=115.9
Q ss_pred ccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc
Q 036689 249 LCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY 328 (595)
Q Consensus 249 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 328 (595)
..+++|++|+++++ .++.+.+ ..+..+++|++|++++|. ++++++ +. .+++|++|+++++. +..++
T Consensus 31 ~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~--~~--------~l~~L~~L~Ls~n~-l~~l~ 96 (317)
T 3o53_A 31 QSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETLD--LE--------SLSTLRTLDLNNNY-VQELL 96 (317)
T ss_dssp TTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSC-CEEEEE--ET--------TCTTCCEEECCSSE-EEEEE
T ss_pred ccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCc-CCcchh--hh--------hcCCCCEEECcCCc-ccccc
Confidence 34567888888765 5555433 345777888888888776 655543 11 17778888887743 54443
Q ss_pred CCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcc
Q 036689 329 PGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQH 408 (595)
Q Consensus 329 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 408 (595)
. .++|+.|+++++. ++.++. ..+++|++|++++|....+.
T Consensus 97 ~------~~~L~~L~l~~n~-l~~~~~--------------------------~~~~~L~~L~l~~N~l~~~~------- 136 (317)
T 3o53_A 97 V------GPSIETLHAANNN-ISRVSC--------------------------SRGQGKKNIYLANNKITMLR------- 136 (317)
T ss_dssp E------CTTCCEEECCSSC-CSEEEE--------------------------CCCSSCEEEECCSSCCCSGG-------
T ss_pred C------CCCcCEEECCCCc-cCCcCc--------------------------cccCCCCEEECCCCCCCCcc-------
Confidence 2 4777777777654 333333 23567777777777544321
Q ss_pred cccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchh
Q 036689 409 LFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVV 488 (595)
Q Consensus 409 ~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~ 488 (595)
+..+..+++|+.|++++ +.++...+..+...+++|++|++++|. ++.++
T Consensus 137 -----------------------------~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 185 (317)
T 3o53_A 137 -----------------------------DLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK 185 (317)
T ss_dssp -----------------------------GBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred -----------------------------chhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCc-Ccccc
Confidence 11233344555555554 234443333333344555555555554 43332
Q ss_pred cccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccC
Q 036689 489 KSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNR 563 (595)
Q Consensus 489 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~ 563 (595)
... .+++|+.|+++++ .++.++.+. ..+++|++|++++| +++.+|..+..+++|+++++++|
T Consensus 186 ~~~---------~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 186 GQV---------VFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CCC---------CCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred ccc---------ccccCCEEECCCC-cCCcchhhh--cccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence 111 1455555555553 444444332 23555555555554 44455555555555555555543
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1e-15 Score=152.41 Aligned_cols=136 Identities=16% Similarity=0.213 Sum_probs=78.0
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCcc-ccchhhhhccCCCcEEEeecccccceeccccc
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKY-IFSASMLGSFEHLQHLEIRYCKGLQEIISKEG 299 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 299 (595)
.+++|++|++++|.+.... +..+ ..+++|++|+++++ .++. ..+ ..+..+++|++|++++|. ++++++..+
T Consensus 124 ~l~~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 195 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAF----NGIF-NGLSSLEVLKMAGN-SFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAF 195 (306)
T ss_dssp TCTTCCEEECTTSCCEECS----TTTT-TTCTTCCEEECTTC-EEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred hccCCCEEECCCCcCCccc----hhhc-ccCcCCCEEECCCC-ccccccch-hHHhhCcCCCEEECCCCC-cCCcCHHHh
Confidence 3566777777777665442 2211 45677777777765 3332 122 234667777777777776 666644332
Q ss_pred CCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCC
Q 036689 300 ADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFL 379 (595)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 379 (595)
.. +++|++|+++++. +..++... ...+++|+.|+++++......+.
T Consensus 196 ~~--------l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~------------------------ 241 (306)
T 2z66_A 196 NS--------LSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQ------------------------ 241 (306)
T ss_dssp TT--------CTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTSCCCBCSSS------------------------
T ss_pred cC--------CCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCCCCcccCHH------------------------
Confidence 22 6777777777744 33332211 12367788888877753332332
Q ss_pred cCccC-CCcceEeccCCCCe
Q 036689 380 PEKVF-PNLEELGLDGKDIR 398 (595)
Q Consensus 380 ~~~~l-~~L~~L~l~~~~~~ 398 (595)
.+..+ ++|++|++++|+..
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEE
T ss_pred HHHhhhccCCEEEccCCCee
Confidence 12344 47888888888644
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=3.2e-15 Score=147.16 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=46.3
Q ss_pred cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689 47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA 126 (595)
Q Consensus 47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~ 126 (595)
.++|++|+++++ .++.+++. .+..+++|++|+++++ .++.+. +..+..+++|++|++++|..++.+++ ..
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~-----~~~~~~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~-~~ 100 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAA-----SFRACRNLTILWLHSN-VLARID--AAAFTGLALLEQLDLSDNAQLRSVDP-AT 100 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTT-----TTTTCTTCCEEECCSS-CCCEEC--TTTTTTCTTCCEEECCSCTTCCCCCT-TT
T ss_pred CCCceEEEeeCC-cCCccCHH-----HcccCCCCCEEECCCC-ccceeC--HhhcCCccCCCEEeCCCCCCccccCH-HH
Confidence 456666666665 45555332 3445566666666664 444432 22245566666666666543554432 44
Q ss_pred hhcCCCCcEEEEccc
Q 036689 127 AKCLPRLERIAVINC 141 (595)
Q Consensus 127 ~~~l~~L~~L~l~~c 141 (595)
+..+++|++|++++|
T Consensus 101 ~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRC 115 (285)
T ss_dssp TTTCTTCCEEECTTS
T ss_pred hcCCcCCCEEECCCC
Confidence 556666666666664
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=1.9e-15 Score=150.38 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=125.0
Q ss_pred eeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecc--cccCCCCC
Q 036689 227 VLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIIS--KEGADDQV 304 (595)
Q Consensus 227 ~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~~~ 304 (595)
.++.++..++.+ |..+ .++|++|+++++ .++.++. ..+.++++|++|+++++. ++.+.. ....
T Consensus 11 ~l~c~~~~l~~i-----p~~~---~~~l~~L~L~~n-~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~---- 75 (306)
T 2z66_A 11 EIRCNSKGLTSV-----PTGI---PSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF---- 75 (306)
T ss_dssp EEECCSSCCSSC-----CSCC---CTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCEEEEEEHHHH----
T ss_pred EEEcCCCCcccC-----CCCC---CCCCCEEECCCC-ccCccCH-hHhhccccCCEEECCCCc-cCcccCcccccc----
Confidence 344444444444 5432 456777777654 3554432 334666777777777665 544321 1111
Q ss_pred CCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccC
Q 036689 305 PPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVF 384 (595)
Q Consensus 305 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 384 (595)
.+++|++|+++++. +..++.. ...+++|++|+++++. ++.++. +..+..+
T Consensus 76 ----~~~~L~~L~Ls~n~-i~~l~~~--~~~l~~L~~L~l~~n~-l~~~~~----------------------~~~~~~l 125 (306)
T 2z66_A 76 ----GTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSN-LKQMSE----------------------FSVFLSL 125 (306)
T ss_dssp ----SCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSE-EESSTT----------------------TTTTTTC
T ss_pred ----cccccCEEECCCCc-cccChhh--cCCCCCCCEEECCCCc-cccccc----------------------chhhhhc
Confidence 15666777766643 3333322 1125666666666543 222221 0113456
Q ss_pred CCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccc
Q 036689 385 PNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVAS 464 (595)
Q Consensus 385 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 464 (595)
++|++|++++|...... +..+..+++|+.|+++++ .++.....
T Consensus 126 ~~L~~L~l~~n~l~~~~------------------------------------~~~~~~l~~L~~L~l~~n-~l~~~~~~ 168 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAF------------------------------------NGIFNGLSSLEVLKMAGN-SFQENFLP 168 (306)
T ss_dssp TTCCEEECTTSCCEECS------------------------------------TTTTTTCTTCCEEECTTC-EEGGGEEC
T ss_pred cCCCEEECCCCcCCccc------------------------------------hhhcccCcCCCEEECCCC-ccccccch
Confidence 67777777666543221 223334455555555553 23220011
Q ss_pred hHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccc
Q 036689 465 SAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNI 544 (595)
Q Consensus 465 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~ 544 (595)
..+..+++|++|++++|. +++++..... .+++|+.|+++++ .++.++.... ..+++|++|++++|.-...
T Consensus 169 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQ-LEQLSPTAFN-------SLSSLQVLNMSHN-NFFSLDTFPY-KCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp SCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECTTS-CCSBCCSGGG-TTCTTCCEEECTTSCCCBC
T ss_pred hHHhhCcCCCEEECCCCC-cCCcCHHHhc-------CCCCCCEEECCCC-ccCccChhhc-cCcccCCEeECCCCCCccc
Confidence 223455556666665554 4444222211 2556666666663 3444433221 2367777888777744344
Q ss_pred cCCCCCCCC-CcceEEeccCCCccccCc
Q 036689 545 FTTGELSTP-PRVDVMYRNRGAPCWDGD 571 (595)
Q Consensus 545 lp~~~~~~~-~L~~l~i~~~~~~~~~~~ 571 (595)
.|..+..++ +|+++++++|. |.++..
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~-~~~~c~ 265 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQND-FACTCE 265 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCC-EECSGG
T ss_pred CHHHHHhhhccCCEEEccCCC-eecccC
Confidence 455555563 78888887543 444433
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=2.6e-15 Score=159.11 Aligned_cols=102 Identities=11% Similarity=-0.043 Sum_probs=54.6
Q ss_pred ccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccC
Q 036689 443 SFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSG 522 (595)
Q Consensus 443 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 522 (595)
.+++|+.|++++ +.++.++.. ..+++|++|++++|. ++.++.... .+++|+.|+++++ .++.+|..
T Consensus 167 ~l~~L~~L~Ls~-N~l~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~--------~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 167 SSDTLEHLNLQY-NFIYDVKGQ---VVFAKLKTLDLSSNK-LAFMGPEFQ--------SAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp GTTTCCEEECTT-SCCCEEECC---CCCTTCCEEECCSSC-CCEECGGGG--------GGTTCSEEECTTS-CCCEECTT
T ss_pred hCCcccEEecCC-Ccccccccc---ccCCCCCEEECCCCC-CCCCCHhHc--------CCCCccEEEecCC-cCcccchh
Confidence 456666666666 345544221 235666666666665 555544322 2566666666663 45555544
Q ss_pred cccccCCCccEEEEeCCCCc-cccCCCCCCCCCcceEEe
Q 036689 523 NYIFKFPSLEVLFVVGCPKM-NIFTTGELSTPPRVDVMY 560 (595)
Q Consensus 523 ~~~~~~~~L~~L~l~~C~~l-~~lp~~~~~~~~L~~l~i 560 (595)
. ..+++|+.|++++|+-. ..+|..+..++.|+.+.+
T Consensus 233 l--~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 233 L--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp C--CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred h--ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 3 23566666666665433 234444444555555555
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=5.8e-15 Score=145.30 Aligned_cols=206 Identities=20% Similarity=0.194 Sum_probs=133.4
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
.++|++|+++++.++.+ +...+..+++|++|+++++ .++.+.+. .+..+++|++|+++++..++.+++..+..
T Consensus 31 ~~~l~~L~l~~n~i~~~-----~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHV-----PAASFRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCceEEEeeCCcCCcc-----CHHHcccCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 46788888888888776 3222256788888888875 56665333 45778888888888886566664433322
Q ss_pred CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689 302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE 381 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 381 (595)
+++|++|+++++. +..+.... ...+++|++|+++++. ++.++. ..+
T Consensus 104 --------l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-----------------------~~~ 149 (285)
T 1ozn_A 104 --------LGRLHTLHLDRCG-LQELGPGL-FRGLAALQYLYLQDNA-LQALPD-----------------------DTF 149 (285)
T ss_dssp --------CTTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECCSSC-CCCCCT-----------------------TTT
T ss_pred --------CcCCCEEECCCCc-CCEECHhH-hhCCcCCCEEECCCCc-ccccCH-----------------------hHh
Confidence 7888888888854 44433221 2236788888888764 444443 224
Q ss_pred ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689 382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL 461 (595)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 461 (595)
+.+++|++|++++|....+... ....+++|+.|++. .+.+....+..+..+++|+.|++++ +.++.+
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~----------~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~ 216 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLH----------QNRVAHVHPHAFRDLGRLMTLYLFA-NNLSAL 216 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECC----------SSCCCEECTTTTTTCTTCCEEECCS-SCCSCC
T ss_pred ccCCCccEEECCCCcccccCHH--HhcCccccCEEECC----------CCcccccCHhHccCcccccEeeCCC-CcCCcC
Confidence 5678888888888865543321 12346677777773 3456666565666777777777777 356655
Q ss_pred ccchHHhhcccccEEEEcCcc
Q 036689 462 VASSAAQSLVALVKMQVFGCR 482 (595)
Q Consensus 462 ~~~~~~~~l~~L~~L~l~~c~ 482 (595)
+...+..+++|++|++++++
T Consensus 217 -~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 217 -PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -CHHHHTTCTTCCEEECCSSC
T ss_pred -CHHHcccCcccCEEeccCCC
Confidence 33445667777777777765
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=6.9e-15 Score=140.74 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=63.4
Q ss_pred CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh
Q 036689 48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA 127 (595)
Q Consensus 48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~ 127 (595)
++|++|+++++ .++.+++. .+..+++|++|+++++..++.+... .+..+++|++|++++|+.++.+++ ..+
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~-----~~~~l~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i~~-~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSH-----AFSNLPNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYIDP-DAL 101 (239)
T ss_dssp TTCCEEEEESC-CCSEECTT-----TTTTCTTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEECT-TSE
T ss_pred CcccEEEEeCC-cceEECHH-----HccCCCCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEcCH-HHh
Confidence 37888888888 68777543 4567888888888886337666332 367788888888888677877654 567
Q ss_pred hcCCCCcEEEEcccC
Q 036689 128 KCLPRLERIAVINCR 142 (595)
Q Consensus 128 ~~l~~L~~L~l~~c~ 142 (595)
.++++|++|++++|.
T Consensus 102 ~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 102 KELPLLKFLGIFNTG 116 (239)
T ss_dssp ECCTTCCEEEEEEEC
T ss_pred CCCCCCCEEeCCCCC
Confidence 788888888888853
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=5.4e-16 Score=164.45 Aligned_cols=239 Identities=16% Similarity=0.135 Sum_probs=174.0
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+++|+.|++++|.++.+. |..+ ..+++|+.|+++++ .++..++ ++.+++|++|++++|. +++++.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~----~~~~-~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~---- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQIS----AADL-APFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELLV---- 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCC----GGGG-TTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSSE-EEEEEE----
T ss_pred cCCCccEEEeeCCcCCCCC----HHHH-hCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCCc-CCCCCC----
Confidence 4668999999999887762 2233 67899999999986 5665544 5889999999999997 888876
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP 380 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (595)
.++|+.|+++++. +..++... +++|+.|++++|..-...|. .
T Consensus 98 ---------~~~L~~L~L~~N~-l~~~~~~~----l~~L~~L~L~~N~l~~~~~~------------------------~ 139 (487)
T 3oja_A 98 ---------GPSIETLHAANNN-ISRVSCSR----GQGKKNIYLANNKITMLRDL------------------------D 139 (487)
T ss_dssp ---------CTTCCEEECCSSC-CCCEEECC----CSSCEEEECCSSCCCSGGGB------------------------C
T ss_pred ---------CCCcCEEECcCCc-CCCCCccc----cCCCCEEECCCCCCCCCCch------------------------h
Confidence 6899999999965 55444432 78999999998764332332 2
Q ss_pred CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689 381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN 460 (595)
Q Consensus 381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 460 (595)
++.+++|++|++++|......+... ...+++|+.|++++ +.+..+++ ...+++|+.|++++ +.++.
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~----------N~l~~~~~--~~~l~~L~~L~Ls~-N~l~~ 205 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQY----------NFIYDVKG--QVVFAKLKTLDLSS-NKLAF 205 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTT----------SCCCEEEC--CCCCTTCCEEECCS-SCCCE
T ss_pred hcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCC----------Cccccccc--cccCCCCCEEECCC-CCCCC
Confidence 4678999999999998766432211 12568999999943 55666543 33488999999998 57887
Q ss_pred cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccc-cccccCcccccCCCccEEEEeC
Q 036689 461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSL-TSFCSGNYIFKFPSLEVLFVVG 538 (595)
Q Consensus 461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~~~~~~L~~L~l~~ 538 (595)
+++. +..+++|++|++++|. +..++..... +++|+.|++++++-. ..++... ..++.|+.+++..
T Consensus 206 ~~~~--~~~l~~L~~L~Ls~N~-l~~lp~~l~~--------l~~L~~L~l~~N~l~c~~~~~~~--~~l~~L~~l~~~~ 271 (487)
T 3oja_A 206 MGPE--FQSAAGVTWISLRNNK-LVLIEKALRF--------SQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQT 271 (487)
T ss_dssp ECGG--GGGGTTCSEEECTTSC-CCEECTTCCC--------CTTCCEEECTTCCBCHHHHHHHH--TTCHHHHHHHHHH
T ss_pred CCHh--HcCCCCccEEEecCCc-Ccccchhhcc--------CCCCCEEEcCCCCCcCcchHHHH--HhCCCCcEEeccc
Confidence 7543 5788999999999987 7777655433 789999999997544 2444333 2477788887763
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=1.9e-14 Score=137.70 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=19.5
Q ss_pred CccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecc
Q 036689 253 NLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIIS 296 (595)
Q Consensus 253 ~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 296 (595)
+|+.|+++++ .++.+++. .+..+++|++|+++++..++.++.
T Consensus 32 ~l~~L~l~~n-~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~ 73 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSH-AFSNLPNISRIYVSIDVTLQQLES 73 (239)
T ss_dssp TCCEEEEESC-CCSEECTT-TTTTCTTCCEEEEECCSSCCEECT
T ss_pred cccEEEEeCC-cceEECHH-HccCCCCCcEEeCCCCCCcceeCH
Confidence 4555555543 34443321 234455555555555533444443
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.4e-13 Score=139.70 Aligned_cols=243 Identities=16% Similarity=0.136 Sum_probs=135.8
Q ss_pred ceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689 226 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP 305 (595)
Q Consensus 226 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 305 (595)
++++-++++++.+ |..+ .+++++|+|+++ .++.+++ ..+.++++|++|++++|.-.+.++...+.+
T Consensus 12 ~~v~C~~~~Lt~i-----P~~l---~~~l~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~---- 77 (350)
T 4ay9_X 12 RVFLCQESKVTEI-----PSDL---PRNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSN---- 77 (350)
T ss_dssp TEEEEESTTCCSC-----CTTC---CTTCSEEEEESC-CCSEECT-TSSTTCTTCCEEEEECCTTCCEECTTSBCS----
T ss_pred CEEEecCCCCCcc-----CcCc---CCCCCEEEccCC-cCCCcCH-HHHcCCCCCCEEECcCCCCCCccChhHhhc----
Confidence 3455555567666 7654 467888888864 6777644 345788888888888887334454432322
Q ss_pred CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689 306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP 385 (595)
Q Consensus 306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 385 (595)
+++|+++.+.+++++..++.+.. ..+++|+.|+++++. ++.++. .......
T Consensus 78 ----L~~l~~~l~~~~N~l~~l~~~~f-~~l~~L~~L~l~~n~-l~~~~~-----------------------~~~~~~~ 128 (350)
T 4ay9_X 78 ----LPKLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISNTG-IKHLPD-----------------------VHKIHSL 128 (350)
T ss_dssp ----CTTCCEEEEEEETTCCEECTTSB-CCCTTCCEEEEEEEC-CSSCCC-----------------------CTTCCBS
T ss_pred ----chhhhhhhcccCCcccccCchhh-hhccccccccccccc-cccCCc-----------------------hhhcccc
Confidence 67777766666666776655432 226778888887653 444443 1112344
Q ss_pred CcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccch
Q 036689 386 NLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASS 465 (595)
Q Consensus 386 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 465 (595)
++..+++.++..+...+..........++.|++ +.+.+..+++ .....++|+.+++.+++.++.++. .
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L----------~~N~i~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~-~ 196 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWL----------NKNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPN-D 196 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC----------CSSCCCEECT-TSSTTEEEEEEECTTCTTCCCCCT-T
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhcc----------ccccccCCCh-hhccccchhHHhhccCCcccCCCH-H
Confidence 566677666554442221111122234555665 3344555544 333345566666665566665532 3
Q ss_pred HHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEe
Q 036689 466 AAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVV 537 (595)
Q Consensus 466 ~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~ 537 (595)
+++.+++|++|+++++. ++.++.. .|.+|+.|.+.++++++.+|. . ..+++|+.+++.
T Consensus 197 ~f~~l~~L~~LdLs~N~-l~~lp~~----------~~~~L~~L~~l~~~~l~~lP~-l--~~l~~L~~l~l~ 254 (350)
T 4ay9_X 197 VFHGASGPVILDISRTR-IHSLPSY----------GLENLKKLRARSTYNLKKLPT-L--EKLVALMEASLT 254 (350)
T ss_dssp TTTTEECCSEEECTTSC-CCCCCSS----------SCTTCCEEECTTCTTCCCCCC-T--TTCCSCCEEECS
T ss_pred HhccCcccchhhcCCCC-cCccChh----------hhccchHhhhccCCCcCcCCC-c--hhCcChhhCcCC
Confidence 34566666666666654 5555432 144555665555556665552 1 235666666654
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=2.2e-15 Score=152.11 Aligned_cols=260 Identities=16% Similarity=0.094 Sum_probs=165.1
Q ss_pred ccccEEEeccCCCCcccccccccccc--CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 22 KDVEYLCLDKSQDVKNVLFDLDREGF--LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 22 ~~L~~L~L~~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
..++.+++.++.... ..+ ..+ ++++.|++.++ .+....+ ....+++|++|+++++ .+.... .+.
T Consensus 47 ~~~~~l~l~~~~~~~---~~~--~~~~~~~l~~L~l~~n-~l~~~~~------~~~~~~~L~~L~L~~~-~l~~~~-~~~ 112 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVT--GRLLSQGVIAFRCPRS-FMDQPLA------EHFSPFRVQHMDLSNS-VIEVST-LHG 112 (336)
T ss_dssp TTSSEEECTTCBCCH---HHH--HHHHHTTCSEEECTTC-EECSCCC------SCCCCBCCCEEECTTC-EECHHH-HHH
T ss_pred hhheeeccccccCCH---HHH--HhhhhccceEEEcCCc-cccccch------hhccCCCCCEEEccCC-CcCHHH-HHH
Confidence 447888888775531 122 455 89999999887 4543322 2446899999999997 344310 122
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
.+..+++|++|++++| .+++..+ ..++.+++|++|++++|..+.... .......+++|++|+++++..+.
T Consensus 113 ~~~~~~~L~~L~L~~~-~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~--------l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGL-RLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFA--------LQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HHTTBCCCSEEECTTC-BCCHHHH-HHHTTCTTCSEEECTTCBSCCHHH--------HHHHHHHCTTCCEEECCCCTTCC
T ss_pred HHhhCCCCCEEeCcCc-ccCHHHH-HHHhcCCCCCEEECCCCCCCCHHH--------HHHHHhcCCCCCEEcCCCCCCcC
Confidence 2678899999999997 4554333 567789999999999986554310 00123457889999999886665
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCC-ccceeecccc--cceeecccCCCccccccCCCccE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALS-NLEVLEMNKV--NIEKIWHNQLPVAMFLCFQNLTR 256 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~--~l~~~~~~~~~~~~~~~l~~L~~ 256 (595)
.... ......++ +|++|++++| .+++. .++..+ ..+++|++
T Consensus 183 ~~~~--------------------------------~~~~~~l~~~L~~L~l~~~~~~~~~~---~l~~~~-~~~~~L~~ 226 (336)
T 2ast_B 183 EKHV--------------------------------QVAVAHVSETITQLNLSGYRKNLQKS---DLSTLV-RRCPNLVH 226 (336)
T ss_dssp HHHH--------------------------------HHHHHHSCTTCCEEECCSCGGGSCHH---HHHHHH-HHCTTCSE
T ss_pred hHHH--------------------------------HHHHHhcccCCCEEEeCCCcccCCHH---HHHHHH-hhCCCCCE
Confidence 4210 01112477 9999999998 34321 124333 57899999
Q ss_pred EEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccC
Q 036689 257 LILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEW 336 (595)
Q Consensus 257 L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 336 (595)
|++++|..+++..+. .+.++++|++|++++|..+........ ..+++|+.|++++| +.+ .....-.
T Consensus 227 L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l--------~~~~~L~~L~l~~~--i~~---~~~~~l~ 292 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLEL--------GEIPTLKTLQVFGI--VPD---GTLQLLK 292 (336)
T ss_dssp EECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGG--------GGCTTCCEEECTTS--SCT---TCHHHHH
T ss_pred EeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHH--------hcCCCCCEEeccCc--cCH---HHHHHHH
Confidence 999998766653333 468899999999999974443221111 12899999999998 322 1111101
Q ss_pred cccceeeecCCCCcccccc
Q 036689 337 PALKLLDVSACDQVTVFDS 355 (595)
Q Consensus 337 ~~L~~L~l~~c~~l~~l~~ 355 (595)
.+|+.|++.++..-+..|.
T Consensus 293 ~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 293 EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp HHSTTSEESCCCSCCTTCS
T ss_pred hhCcceEEecccCccccCC
Confidence 3477777865543333444
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.1e-13 Score=134.88 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=51.5
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+++|++|++++|.++.+ |...+..+++|+.|+++++ .++.+++ ..+..+++|++|++++|. ++.++...+.
T Consensus 131 ~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 202 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSL-----PKGVFDKLTSLKELRLYNN-QLKRVPE-GAFDKLTELKTLKLDNNQ-LKRVPEGAFD 202 (270)
T ss_dssp TCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred cCcCCCEEECCCCcCCcc-----CHhHccCCcccceeEecCC-cCcEeCh-hHhccCCCcCEEECCCCc-CCcCCHHHhc
Confidence 356677777777766655 3332245677777777764 4555433 234667777777777775 6665542222
Q ss_pred CCCCCCCcCCCcccEEeecCCC
Q 036689 301 DDQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~ 322 (595)
. +++|+.|++.+++
T Consensus 203 ~--------l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 203 S--------LEKLKMLQLQENP 216 (270)
T ss_dssp T--------CTTCCEEECCSSC
T ss_pred c--------ccCCCEEEecCCC
Confidence 1 6677777777654
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=2.2e-13 Score=138.16 Aligned_cols=226 Identities=18% Similarity=0.147 Sum_probs=151.8
Q ss_pred CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689 223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD 302 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 302 (595)
+++++|++++|+++.+ |...|..+++|++|+|+++...+.+ +...+.++++++++.+.++.+++.+++..+..
T Consensus 30 ~~l~~L~Ls~N~i~~i-----~~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~- 102 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVI-----QKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINPEAFQN- 102 (350)
T ss_dssp TTCSEEEEESCCCSEE-----CTTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCEECTTSBCC-
T ss_pred CCCCEEEccCCcCCCc-----CHHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccccCchhhhh-
Confidence 5788888888888877 5543367888999999887544544 33345778888776666655688887644433
Q ss_pred CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689 303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK 382 (595)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 382 (595)
+++|+.|+++++. +..++.... ....++..+.+.++..+..++.. .+..
T Consensus 103 -------l~~L~~L~l~~n~-l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~----------------------~f~~ 151 (350)
T 4ay9_X 103 -------LPNLQYLLISNTG-IKHLPDVHK-IHSLQKVLLDIQDNINIHTIERN----------------------SFVG 151 (350)
T ss_dssp -------CTTCCEEEEEEEC-CSSCCCCTT-CCBSSCEEEEEESCTTCCEECTT----------------------SSTT
T ss_pred -------ccccccccccccc-cccCCchhh-cccchhhhhhhcccccccccccc----------------------chhh
Confidence 7888888888843 444443221 12456777788777777777661 1122
Q ss_pred cCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccc
Q 036689 383 VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLV 462 (595)
Q Consensus 383 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 462 (595)
....++.|++++|....+....+ ...+|+.+.+. .++.+..+++..+..+++|+.|++++ +.++.++
T Consensus 152 ~~~~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~---------~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp 218 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLS---------DNNNLEELPNDVFHGASGPVILDISR-TRIHSLP 218 (350)
T ss_dssp SBSSCEEEECCSSCCCEECTTSS---TTEEEEEEECT---------TCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCC
T ss_pred cchhhhhhccccccccCCChhhc---cccchhHHhhc---------cCCcccCCCHHHhccCcccchhhcCC-CCcCccC
Confidence 33467888888887665543322 23466777663 45677777776777888899999988 5788774
Q ss_pred cchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccc
Q 036689 463 ASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLD 512 (595)
Q Consensus 463 ~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~ 512 (595)
. ..+.+|+.|.+.++..+++++.- . .|++|+.+++.+
T Consensus 219 ~----~~~~~L~~L~~l~~~~l~~lP~l-~--------~l~~L~~l~l~~ 255 (350)
T 4ay9_X 219 S----YGLENLKKLRARSTYNLKKLPTL-E--------KLVALMEASLTY 255 (350)
T ss_dssp S----SSCTTCCEEECTTCTTCCCCCCT-T--------TCCSCCEEECSC
T ss_pred h----hhhccchHhhhccCCCcCcCCCc-h--------hCcChhhCcCCC
Confidence 3 23567888888888878777642 2 378888888765
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=5.9e-15 Score=147.25 Aligned_cols=253 Identities=18% Similarity=0.156 Sum_probs=167.1
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCC-------cCCCccEEeccCccCcc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDD-------AFPILESLNLYNLIKLE 92 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~ 92 (595)
..++|++|++.++.. .++..+ ... |++|+|+++ .++...... ... .+++|++|+++++ +++
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~--~~~--L~~L~L~~n-~l~~~~~~~----~~~~~~~~~~~l~~L~~L~L~~n-~l~ 108 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQF--TDI--IKSLSLKRL-TVRAARIPS----RILFGALRVLGISGLQELTLENL-EVT 108 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHH--HHH--HHHCCCCEE-EEEEEECBH----HHHHHHHHHHTTSCCCEEEEEEE-BCB
T ss_pred cCCCceeEeeccccc--ccHHHH--HHH--Hhhcccccc-cccCCCcCH----HHHHHHHHhcCcCCccEEEccCC-ccc
Confidence 567889999988877 444433 222 888888887 565431110 111 4789999999996 565
Q ss_pred ccccccccc--cCCCCccEEEecCCCCcccccchhhhhcC-----CCCcEEEEcccCCcceeecccCccccccccccccc
Q 036689 93 RICQDRLSV--QSFNELKTIRVELCDQLSNIFLLSAAKCL-----PRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFG 165 (595)
Q Consensus 93 ~~~~~~~~~--~~l~~L~~L~L~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 165 (595)
... +..+ ..+++|++|+++++ .+++.| ..++.+ ++|++|++++|. +..++. .....++
T Consensus 109 ~~~--~~~~~~~~l~~L~~L~Ls~N-~l~~~~--~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~---------~~~~~l~ 173 (312)
T 1wwl_A 109 GTA--PPPLLEATGPDLNILNLRNV-SWATRD--AWLAELQQWLKPGLKVLSIAQAH-SLNFSC---------EQVRVFP 173 (312)
T ss_dssp SCC--CCCSSSCCSCCCSEEEEESC-BCSSSS--SHHHHHHTTCCTTCCEEEEESCS-CCCCCT---------TTCCCCS
T ss_pred chh--HHHHHHhcCCCccEEEccCC-CCcchh--HHHHHHHHhhcCCCcEEEeeCCC-CccchH---------HHhccCC
Confidence 421 2223 78899999999995 677664 555555 899999999854 444331 1344678
Q ss_pred ccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCc
Q 036689 166 QLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPV 245 (595)
Q Consensus 166 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 245 (595)
+|+.|+++++.-........ ..+ ...+++|++|++++|.++.+. .++.
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~----------~~~--------------------~~~l~~L~~L~L~~N~l~~~~--~~~~ 221 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLIS----------ALC--------------------PLKFPTLQVLALRNAGMETPS--GVCS 221 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHH----------HSC--------------------TTSCTTCCEEECTTSCCCCHH--HHHH
T ss_pred CCCEEECCCCCcCcchHHHH----------HHH--------------------hccCCCCCEEECCCCcCcchH--HHHH
Confidence 89999998876432211000 000 024789999999999877431 1133
Q ss_pred cccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcc
Q 036689 246 AMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELK 325 (595)
Q Consensus 246 ~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 325 (595)
.++..+++|++|+++++ .++...+...+..+++|++|++++|. ++.++.. . .++|++|+++++ .++
T Consensus 222 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~-~----------~~~L~~L~Ls~N-~l~ 287 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG-L----------PAKLSVLDLSYN-RLD 287 (312)
T ss_dssp HHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS-C----------CSEEEEEECCSS-CCC
T ss_pred HHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhhh-c----------cCCceEEECCCC-CCC
Confidence 33346789999999976 56654433345668899999999998 7766541 1 378999999995 466
Q ss_pred cccCCCccccCcccceeeecCCC
Q 036689 326 CLYPGMHTSEWPALKLLDVSACD 348 (595)
Q Consensus 326 ~~~~~~~~~~~~~L~~L~l~~c~ 348 (595)
.++. ...+++|+.|++++++
T Consensus 288 ~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 288 RNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCC---TTTSCEEEEEECTTCT
T ss_pred CChh---HhhCCCCCEEeccCCC
Confidence 6543 2348999999998875
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=2.7e-13 Score=132.59 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=84.9
Q ss_pred cccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+++++|+++++... .+++ .+ .++++|++|++++| .++.+.+. .+..+++|++|+++++ .++.+.. .
T Consensus 27 ~~~l~~L~ls~n~l~-~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~ 94 (276)
T 2z62_A 27 PFSTKNLDLSFNPLR-HLGSYSF--FSFPELQVLDLSRC-EIQTIEDG-----AYQSLSHLSTLILTGN-PIQSLAL--G 94 (276)
T ss_dssp CTTCCEEECTTCCCC-EECTTTT--TTCTTCSEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCEECT--T
T ss_pred CCCccEEECCCCccc-ccCHhHh--ccccCCcEEECCCC-cCCccCHH-----HccCCcCCCEEECCCC-ccCccCh--h
Confidence 457999999999773 4443 34 78999999999999 78887544 5678899999999996 6766532 2
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 142 (595)
.+..+++|++|++++| .++.+++ ..++.+++|++|++++|.
T Consensus 95 ~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 95 AFSGLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp TTTTCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSC
T ss_pred hhcCCccccEEECCCC-CccccCc-hhcccCCCCCEEECcCCc
Confidence 3778999999999995 6666653 357889999999999854
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=2.4e-13 Score=133.04 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=37.8
Q ss_pred CCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhh
Q 036689 49 QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK 128 (595)
Q Consensus 49 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~ 128 (595)
+|++|+++++ .++.+++. .+..+++|++|+++++ .+..+.. ..+..+++|++|+++++ .++..++ ..+.
T Consensus 29 ~l~~L~ls~n-~l~~~~~~-----~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~ 97 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSY-----SFFSFPELQVLDLSRC-EIQTIED--GAYQSLSHLSTLILTGN-PIQSLAL-GAFS 97 (276)
T ss_dssp TCCEEECTTC-CCCEECTT-----TTTTCTTCSEEECTTC-CCCEECT--TTTTTCTTCCEEECTTC-CCCEECT-TTTT
T ss_pred CccEEECCCC-cccccCHh-----HhccccCCcEEECCCC-cCCccCH--HHccCCcCCCEEECCCC-ccCccCh-hhhc
Confidence 4555555555 45544322 2344555555555553 4443321 12344555555555553 3443332 3344
Q ss_pred cCCCCcEEEEcc
Q 036689 129 CLPRLERIAVIN 140 (595)
Q Consensus 129 ~l~~L~~L~l~~ 140 (595)
++++|++|++++
T Consensus 98 ~l~~L~~L~l~~ 109 (276)
T 2z62_A 98 GLSSLQKLVAVE 109 (276)
T ss_dssp TCTTCCEEECTT
T ss_pred CCccccEEECCC
Confidence 455555555544
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=3.2e-13 Score=132.95 Aligned_cols=199 Identities=21% Similarity=0.192 Sum_probs=133.3
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+++++.+++++++++.+ |..+ .++++.|+++++ .++.+.+ ..+..+++|++|+++++. ++.++.. .
T Consensus 8 ~l~~l~~l~~~~~~l~~i-----p~~~---~~~l~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~--~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL-----PPDL---PKDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVD--G 74 (290)
T ss_dssp CSTTCCEEECTTSCCSSC-----CSCC---CTTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECC--S
T ss_pred ccCCccEEECCCCCCCcC-----CCCC---CCCCCEEEcCCC-cCCccCH-HHhhcCCCCCEEECCCCc-cCcccCC--C
Confidence 578899999999888877 7654 578999999976 5666544 356889999999999998 8887652 1
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP 380 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (595)
.+++|++|+++++ .+..++... ..+++|+.|+++++. ++.++. ..
T Consensus 75 --------~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~l~~N~-l~~l~~-----------------------~~ 119 (290)
T 1p9a_G 75 --------TLPVLGTLDLSHN-QLQSLPLLG--QTLPALTVLDVSFNR-LTSLPL-----------------------GA 119 (290)
T ss_dssp --------CCTTCCEEECCSS-CCSSCCCCT--TTCTTCCEEECCSSC-CCCCCS-----------------------ST
T ss_pred --------CCCcCCEEECCCC-cCCcCchhh--ccCCCCCEEECCCCc-CcccCH-----------------------HH
Confidence 2899999999985 466555432 337889999998763 555554 33
Q ss_pred CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689 381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN 460 (595)
Q Consensus 381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 460 (595)
+..+++|++|++++|....+..+. ...+++|+.|++ +.+.+..+++..+..+++|+.|++++ +.++.
T Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L----------~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ 186 (290)
T 1p9a_G 120 LRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSL----------ANNNLTELPAGLLNGLENLDTLLLQE-NSLYT 186 (290)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEEC----------TTSCCSCCCTTTTTTCTTCCEEECCS-SCCCC
T ss_pred HcCCCCCCEEECCCCCCCccChhh--cccccCCCEEEC----------CCCcCCccCHHHhcCcCCCCEEECCC-CcCCc
Confidence 567888999999988755432221 124556666666 33445555554455566666666666 44555
Q ss_pred cccchHHhhcccccEEEEcCcc
Q 036689 461 LVASSAAQSLVALVKMQVFGCR 482 (595)
Q Consensus 461 ~~~~~~~~~l~~L~~L~l~~c~ 482 (595)
++. . +...+.|+.|++.+++
T Consensus 187 ip~-~-~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 IPK-G-FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCT-T-TTTTCCCSEEECCSCC
T ss_pred cCh-h-hcccccCCeEEeCCCC
Confidence 432 2 2344566666666544
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=1.4e-14 Score=146.16 Aligned_cols=108 Identities=8% Similarity=0.038 Sum_probs=68.2
Q ss_pred CCCcEEEcccCCCceEecCCCCCCCcCCcC--CCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchh
Q 036689 48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAF--PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLS 125 (595)
Q Consensus 48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~ 125 (595)
..++.++++++ .+. +. ....+ ++++.|++.++ .+..... .+..+++|++|++++|. ++......
T Consensus 47 ~~~~~l~l~~~-~~~---~~-----~~~~~~~~~l~~L~l~~n-~l~~~~~---~~~~~~~L~~L~L~~~~-l~~~~~~~ 112 (336)
T 2ast_B 47 SLWQTLDLTGK-NLH---PD-----VTGRLLSQGVIAFRCPRS-FMDQPLA---EHFSPFRVQHMDLSNSV-IEVSTLHG 112 (336)
T ss_dssp TTSSEEECTTC-BCC---HH-----HHHHHHHTTCSEEECTTC-EECSCCC---SCCCCBCCCEEECTTCE-ECHHHHHH
T ss_pred hhheeeccccc-cCC---HH-----HHHhhhhccceEEEcCCc-cccccch---hhccCCCCCEEEccCCC-cCHHHHHH
Confidence 34788888876 333 11 23344 78999999985 5555422 25678999999999974 55431226
Q ss_pred hhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 126 AAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 126 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
.+..+++|++|++++|......+ ..+..+++|++|+++++..+.
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~----------~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIV----------NTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHH----------HHHTTCTTCSEEECTTCBSCC
T ss_pred HHhhCCCCCEEeCcCcccCHHHH----------HHHhcCCCCCEEECCCCCCCC
Confidence 77889999999999875322221 122335666666666664443
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=3.1e-14 Score=141.97 Aligned_cols=230 Identities=19% Similarity=0.185 Sum_probs=146.1
Q ss_pred ccEEEeccCCCCc-ccccccc-----ccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccc
Q 036689 24 VEYLCLDKSQDVK-NVLFDLD-----REGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD 97 (595)
Q Consensus 24 L~~L~L~~~~~~~-~~~~~~~-----~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 97 (595)
++.|+++++.... .++.... ...+++|++|++++| .++...+... +...+++|++|+++++ .++..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~--- 136 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPL---LEATGPDLNILNLRNV-SWATR--- 136 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCS---SSCCSCCCSEEEEESC-BCSSS---
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHH---HHhcCCCccEEEccCC-CCcch---
Confidence 7788887766522 1211110 015889999999888 5653322210 1267888999999985 66655
Q ss_pred cccccCC-----CCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc--ccccccceE
Q 036689 98 RLSVQSF-----NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK--IEFGQLSTL 170 (595)
Q Consensus 98 ~~~~~~l-----~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~--~~~~~L~~L 170 (595)
+..++.+ ++|++|+++++ .++..++ ..++++++|++|++++|.....++.. ... ..+++|+.|
T Consensus 137 ~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~~~~~l~~L~~L 206 (312)
T 1wwl_A 137 DAWLAELQQWLKPGLKVLSIAQA-HSLNFSC-EQVRVFPALSTLDLSDNPELGERGLI--------SALCPLKFPTLQVL 206 (312)
T ss_dssp SSHHHHHHTTCCTTCCEEEEESC-SCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHH--------HHSCTTSCTTCCEE
T ss_pred hHHHHHHHHhhcCCCcEEEeeCC-CCccchH-HHhccCCCCCEEECCCCCcCcchHHH--------HHHHhccCCCCCEE
Confidence 2224444 88999999985 6676654 56778899999999886644321100 011 357888888
Q ss_pred ecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCcccccc
Q 036689 171 CLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLC 250 (595)
Q Consensus 171 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 250 (595)
+++++. +..++.. .......+++|++|++++|.++... |...+..
T Consensus 207 ~L~~N~-l~~~~~~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~ 251 (312)
T 1wwl_A 207 ALRNAG-METPSGV------------------------------CSALAAARVQLQGLDLSHNSLRDAA----GAPSCDW 251 (312)
T ss_dssp ECTTSC-CCCHHHH------------------------------HHHHHHTTCCCSEEECTTSCCCSSC----CCSCCCC
T ss_pred ECCCCc-CcchHHH------------------------------HHHHHhcCCCCCEEECCCCcCCccc----chhhhhh
Confidence 888763 2211100 0000124689999999999887652 1111135
Q ss_pred CCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689 251 FQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 251 l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 322 (595)
+++|++|+++++ .++.++.. + . ++|++|+++++. +++++. .. .+++|++|++++++
T Consensus 252 l~~L~~L~Ls~N-~l~~ip~~-~-~--~~L~~L~Ls~N~-l~~~p~--~~--------~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQVPKG-L-P--AKLSVLDLSYNR-LDRNPS--PD--------ELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTS-CCSSCCSS-C-C--SEEEEEECCSSC-CCSCCC--TT--------TSCEEEEEECTTCT
T ss_pred cCCCCEEECCCC-ccChhhhh-c-c--CCceEEECCCCC-CCCChh--Hh--------hCCCCCEEeccCCC
Confidence 789999999976 56665432 2 2 789999999997 887743 22 28999999999854
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=1.6e-13 Score=133.92 Aligned_cols=224 Identities=16% Similarity=0.193 Sum_probs=148.4
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+.++..+++.+.... .. .....+++|+.|.+.++ .++.+. ....+++|++|+++++ .++.+ .
T Consensus 17 ~~~~l~~l~l~~~~~~-~~---~~~~~l~~L~~L~l~~~-~i~~~~-------~l~~l~~L~~L~l~~n-~l~~~----~ 79 (272)
T 3rfs_A 17 AFAETIKANLKKKSVT-DA---VTQNELNSIDQIIANNS-DIKSVQ-------GIQYLPNVRYLALGGN-KLHDI----S 79 (272)
T ss_dssp HHHHHHHHHHTCSCTT-SE---ECHHHHTTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECTTS-CCCCC----G
T ss_pred hHHHHHHHHhcCcccc-cc---cccccccceeeeeeCCC-Cccccc-------ccccCCCCcEEECCCC-CCCCc----h
Confidence 4555666666665442 22 12267888999999887 565431 3567888999999886 56654 2
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
.+..+++|++|++++| .++.+++ ..+.++++|++|++++|. +..++..
T Consensus 80 ~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~----------------------------- 127 (272)
T 3rfs_A 80 ALKELTNLTYLILTGN-QLQSLPN-GVFDKLTNLKELVLVENQ-LQSLPDG----------------------------- 127 (272)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTT-----------------------------
T ss_pred hhcCCCCCCEEECCCC-ccCccCh-hHhcCCcCCCEEECCCCc-CCccCHH-----------------------------
Confidence 3678888999999885 6676654 556788888888888853 3322210
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
. ...+++|++|++++|.++.+ +...+..+++|+.|++
T Consensus 128 -----------------------------------~---~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 128 -----------------------------------V---FDKLTNLTYLNLAHNQLQSL-----PKGVFDKLTNLTELDL 164 (272)
T ss_dssp -----------------------------------T---TTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEEC
T ss_pred -----------------------------------H---hccCCCCCEEECCCCccCcc-----CHHHhccCccCCEEEC
Confidence 0 11366788888888877655 3332256788888888
Q ss_pred ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCccc
Q 036689 260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPAL 339 (595)
Q Consensus 260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L 339 (595)
+++ .++.+++ ..++.+++|++|++++|. ++.+++..+. .+++|+.|++.+++-. ..++.|
T Consensus 165 ~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~--------~l~~L~~L~l~~N~~~---------~~~~~l 224 (272)
T 3rfs_A 165 SYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ-LKSVPDGVFD--------RLTSLQYIWLHDNPWD---------CTCPGI 224 (272)
T ss_dssp CSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTT--------TCTTCCEEECCSSCBC---------CCTTTT
T ss_pred CCC-CcCccCH-HHhcCCccCCEEECCCCc-CCccCHHHHh--------CCcCCCEEEccCCCcc---------ccCcHH
Confidence 876 5666544 345788889999998887 7766553222 2788899998886521 116778
Q ss_pred ceeeecCCCCcccccc
Q 036689 340 KLLDVSACDQVTVFDS 355 (595)
Q Consensus 340 ~~L~l~~c~~l~~l~~ 355 (595)
+.+.+..+.....+|.
T Consensus 225 ~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRN 240 (272)
T ss_dssp HHHHHHHHHTGGGBBC
T ss_pred HHHHHHHHhCCCcccC
Confidence 8887776655555665
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=9.3e-14 Score=135.60 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=141.9
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+++|+.|++.++.. ..+ +.+ +.+++|++|++++| .++.+. ....+++|++|+++++ .++.+...
T Consensus 39 ~l~~L~~L~l~~~~i-~~~-~~l--~~l~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~L~~n-~l~~~~~~-- 103 (272)
T 3rfs_A 39 ELNSIDQIIANNSDI-KSV-QGI--QYLPNVRYLALGGN-KLHDIS-------ALKELTNLTYLILTGN-QLQSLPNG-- 103 (272)
T ss_dssp HHTTCCEEECTTSCC-CCC-TTG--GGCTTCCEEECTTS-CCCCCG-------GGTTCTTCCEEECTTS-CCCCCCTT--
T ss_pred cccceeeeeeCCCCc-ccc-ccc--ccCCCCcEEECCCC-CCCCch-------hhcCCCCCCEEECCCC-ccCccChh--
Confidence 789999999999876 333 234 78999999999998 566431 4668899999999996 77765322
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
.+..+++|++|++++| .++.+++ ..+..+++|++|++++| .+..++..
T Consensus 104 ~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~----------------------------- 151 (272)
T 3rfs_A 104 VFDKLTNLKELVLVEN-QLQSLPD-GVFDKLTNLTYLNLAHN-QLQSLPKG----------------------------- 151 (272)
T ss_dssp TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-----------------------------
T ss_pred HhcCCcCCCEEECCCC-cCCccCH-HHhccCCCCCEEECCCC-ccCccCHH-----------------------------
Confidence 2678999999999996 6776654 56788999999999986 34333210
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
.| ..+++|+.|++++|+++.+ +...+..+++|+.|++
T Consensus 152 -----------------------------------~~---~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 152 -----------------------------------VF---DKLTNLTELDLSYNQLQSL-----PEGVFDKLTQLKDLRL 188 (272)
T ss_dssp -----------------------------------TT---TTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEEC
T ss_pred -----------------------------------Hh---ccCccCCEEECCCCCcCcc-----CHHHhcCCccCCEEEC
Confidence 01 1366788888888877655 3332246788888888
Q ss_pred ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccC
Q 036689 260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYP 329 (595)
Q Consensus 260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 329 (595)
+++ .++.+++ ..+..+++|++|++++|. +... +|+|+.+++..+.....++.
T Consensus 189 ~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-~~~~---------------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 189 YQN-QLKSVPD-GVFDRLTSLQYIWLHDNP-WDCT---------------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CSS-CCSCCCT-TTTTTCTTCCEEECCSSC-BCCC---------------TTTTHHHHHHHHHTGGGBBC
T ss_pred CCC-cCCccCH-HHHhCCcCCCEEEccCCC-cccc---------------CcHHHHHHHHHHhCCCcccC
Confidence 875 5666544 345778888888888876 3211 67777777776443334433
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=7.4e-13 Score=130.35 Aligned_cols=207 Identities=17% Similarity=0.161 Sum_probs=128.8
Q ss_pred hccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccc
Q 036689 275 GSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD 354 (595)
Q Consensus 275 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 354 (595)
++++++++++++++. ++.+|.. . .++++.|+++++. +..+.... ...+++|+.|+++++. ++.++
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip~~-~----------~~~l~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~ 71 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALPPD-L----------PKDTTILHLSENL-LYTFSLAT-LMPYTRLTQLNLDRAE-LTKLQ 71 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCCSC-C----------CTTCCEEECTTSC-CSEEEGGG-GTTCTTCCEEECTTSC-CCEEE
T ss_pred cccCCccEEECCCCC-CCcCCCC-C----------CCCCCEEEcCCCc-CCccCHHH-hhcCCCCCEEECCCCc-cCccc
Confidence 566677777777665 6665541 1 4566777777643 33332211 1125666666666543 33333
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCcccc
Q 036689 355 SELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLL 434 (595)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~ 434 (595)
. .+.+++|++|++++|.. .
T Consensus 72 ~-------------------------~~~l~~L~~L~Ls~N~l------------------------------------~ 90 (290)
T 1p9a_G 72 V-------------------------DGTLPVLGTLDLSHNQL------------------------------------Q 90 (290)
T ss_dssp C-------------------------CSCCTTCCEEECCSSCC------------------------------------S
T ss_pred C-------------------------CCCCCcCCEEECCCCcC------------------------------------C
Confidence 3 13456666666666542 2
Q ss_pred ccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc
Q 036689 435 ILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD 514 (595)
Q Consensus 435 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (595)
.++. .+..+++|+.|++++ +.++.+++ ..+..+++|++|+++++. ++.++..... .+++|+.|+++++
T Consensus 91 ~l~~-~~~~l~~L~~L~l~~-N~l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N- 158 (290)
T 1p9a_G 91 SLPL-LGQTLPALTVLDVSF-NRLTSLPL-GALRGLGELQELYLKGNE-LKTLPPGLLT-------PTPKLEKLSLANN- 158 (290)
T ss_dssp SCCC-CTTTCTTCCEEECCS-SCCCCCCS-STTTTCTTCCEEECTTSC-CCCCCTTTTT-------TCTTCCEEECTTS-
T ss_pred cCch-hhccCCCCCEEECCC-CcCcccCH-HHHcCCCCCCEEECCCCC-CCccChhhcc-------cccCCCEEECCCC-
Confidence 2222 455677788888887 56666633 345677888888888775 6666554332 3778888888884
Q ss_pred cccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCCccccCch
Q 036689 515 SLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGDL 572 (595)
Q Consensus 515 ~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~~~~~~~~ 572 (595)
.++.++.+.+. .+++|++|+++++ +++.+|.++...++|+.+.+.+|. |.++.++
T Consensus 159 ~l~~l~~~~~~-~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np-~~C~c~~ 213 (290)
T 1p9a_G 159 NLTELPAGLLN-GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP-WLCNCEI 213 (290)
T ss_dssp CCSCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC-BCCSGGG
T ss_pred cCCccCHHHhc-CcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC-ccCcCcc
Confidence 67777765532 4788888888886 677888888778888888887543 5555443
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=1.2e-12 Score=127.52 Aligned_cols=199 Identities=19% Similarity=0.181 Sum_probs=116.2
Q ss_pred ccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCC
Q 036689 224 NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQ 303 (595)
Q Consensus 224 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 303 (595)
..+.+++++++++.+ |..+ .+++++|+++++ .++.+++ ..+.++++|++|+++++. ++.++...+..
T Consensus 17 ~~~~l~~~~~~l~~i-----p~~~---~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~-- 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-----PSNI---PADTKKLDLQSN-KLSSLPS-KAFHRLTKLRLLYLNDNK-LQTLPAGIFKE-- 83 (270)
T ss_dssp TTTEEECTTSCCSSC-----CSCC---CTTCSEEECCSS-CCSCCCT-TSSSSCTTCCEEECCSSC-CSCCCTTTTSS--
T ss_pred CCCEEEccCCCCCcc-----CCCC---CCCCCEEECcCC-CCCeeCH-HHhcCCCCCCEEECCCCc-cCeeChhhhcC--
Confidence 467788888777766 6543 467899999875 5666543 245788889999998887 77766533222
Q ss_pred CCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCcc
Q 036689 304 VPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKV 383 (595)
Q Consensus 304 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 383 (595)
+++|++|+++++. +..++... ...+++|+.|+++++. ++.++. ..++.
T Consensus 84 ------l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-----------------------~~~~~ 131 (270)
T 2o6q_A 84 ------LKNLETLWVTDNK-LQALPIGV-FDQLVNLAELRLDRNQ-LKSLPP-----------------------RVFDS 131 (270)
T ss_dssp ------CTTCCEEECCSSC-CCCCCTTT-TTTCSSCCEEECCSSC-CCCCCT-----------------------TTTTT
T ss_pred ------CCCCCEEECCCCc-CCcCCHhH-cccccCCCEEECCCCc-cCeeCH-----------------------HHhCc
Confidence 7888888888854 55544332 1236788888887764 444444 22456
Q ss_pred CCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccccc
Q 036689 384 FPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVA 463 (595)
Q Consensus 384 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 463 (595)
+++|++|++++|....+... ....+++|+.|++. .+.+..+++..+..+++|+.|+++++ .++.++
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~----------~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~- 197 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKG--VFDKLTSLKELRLY----------NNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVP- 197 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECC----------SSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCC-
T ss_pred CcCCCEEECCCCcCCccCHh--HccCCcccceeEec----------CCcCcEeChhHhccCCCcCEEECCCC-cCCcCC-
Confidence 78888888888764432211 11234455555552 22344444433444555555555552 344432
Q ss_pred chHHhhcccccEEEEcCc
Q 036689 464 SSAAQSLVALVKMQVFGC 481 (595)
Q Consensus 464 ~~~~~~l~~L~~L~l~~c 481 (595)
...+..+++|++|+++++
T Consensus 198 ~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HHHhccccCCCEEEecCC
Confidence 222344555555555444
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=9.4e-13 Score=130.89 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=37.1
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
..+++|++|+++++ .++.++ ....+++|++|+++++ .+..+. . +..+++|++|++++| .++.+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l~-------~~~~l~~L~~L~L~~n-~i~~~~---~-~~~l~~L~~L~L~~n-~l~~~--- 100 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTIE-------GVQYLNNLIGLELKDN-QITDLA---P-LKNLTKITELELSGN-PLKNV--- 100 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCG---G-GTTCCSCCEEECCSC-CCSCC---
T ss_pred HHcCCcCEEEeeCC-CccCch-------hhhccCCCCEEEccCC-cCCCCh---h-HccCCCCCEEEccCC-cCCCc---
Confidence 34555555555554 333321 2334555555555553 343331 1 445555555555553 34433
Q ss_pred hhhhcCCCCcEEEEcc
Q 036689 125 SAAKCLPRLERIAVIN 140 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~ 140 (595)
+.+..+++|++|++++
T Consensus 101 ~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 101 SAIAGLQSIKTLDLTS 116 (308)
T ss_dssp GGGTTCTTCCEEECTT
T ss_pred hhhcCCCCCCEEECCC
Confidence 2344555555555555
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=1.1e-12 Score=130.47 Aligned_cols=190 Identities=15% Similarity=0.219 Sum_probs=121.1
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+++|++|++.++.. ..+ +.+ ..+++|++|++++| .++.+. .+..+++|++|+++++ .++.+.
T Consensus 39 ~l~~L~~L~l~~~~i-~~l-~~~--~~l~~L~~L~L~~n-~i~~~~-------~~~~l~~L~~L~L~~n-~l~~~~---- 101 (308)
T 1h6u_A 39 DLDGITTLSAFGTGV-TTI-EGV--QYLNNLIGLELKDN-QITDLA-------PLKNLTKITELELSGN-PLKNVS---- 101 (308)
T ss_dssp HHHTCCEEECTTSCC-CCC-TTG--GGCTTCCEEECCSS-CCCCCG-------GGTTCCSCCEEECCSC-CCSCCG----
T ss_pred HcCCcCEEEeeCCCc-cCc-hhh--hccCCCCEEEccCC-cCCCCh-------hHccCCCCCEEEccCC-cCCCch----
Confidence 577888888887765 333 233 67888888888877 565442 2556778888888885 565541
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
.+..+++|++|++++| .+++++ .+..+++|++|++++|. +..++
T Consensus 102 ~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~------------------------------- 145 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTST-QITDVT---PLAGLSNLQVLYLDLNQ-ITNIS------------------------------- 145 (308)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCG---GGTTCTTCCEEECCSSC-CCCCG-------------------------------
T ss_pred hhcCCCCCCEEECCCC-CCCCch---hhcCCCCCCEEECCCCc-cCcCc-------------------------------
Confidence 3667788888888885 566553 36677888888887743 22211
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
....+++|+.|++++|.++.+ +. + ..+++|+.|++
T Consensus 146 --------------------------------------~l~~l~~L~~L~l~~n~l~~~-----~~-l-~~l~~L~~L~l 180 (308)
T 1h6u_A 146 --------------------------------------PLAGLTNLQYLSIGNAQVSDL-----TP-L-ANLSKLTTLKA 180 (308)
T ss_dssp --------------------------------------GGGGCTTCCEEECCSSCCCCC-----GG-G-TTCTTCCEEEC
T ss_pred --------------------------------------cccCCCCccEEEccCCcCCCC-----hh-h-cCCCCCCEEEC
Confidence 011356777777777766654 22 1 45777777777
Q ss_pred ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689 260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 322 (595)
+++ .++++++ +..+++|++|++++|. ++++++ .. .+++|+.|++++++
T Consensus 181 ~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~~--l~--------~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 181 DDN-KISDISP---LASLPNLIEVHLKNNQ-ISDVSP--LA--------NTSNLFIVTLTNQT 228 (308)
T ss_dssp CSS-CCCCCGG---GGGCTTCCEEECTTSC-CCBCGG--GT--------TCTTCCEEEEEEEE
T ss_pred CCC-ccCcChh---hcCCCCCCEEEccCCc-cCcccc--cc--------CCCCCCEEEccCCe
Confidence 765 4555433 4677777777777776 665543 11 16777777777644
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=130.00 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=80.4
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+++|++|+++++...+..+..+....+++|++|++++| .++...+... ......+++|++|+++++ .+..+.. .
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~-~~~~~~~~~L~~L~Ls~n-~l~~~~~--~ 163 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLA-ELQQWLKPGLKVLSIAQA-HSPAFSC--E 163 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHH-HHHTTBCSCCCEEEEECC-SSCCCCT--T
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhH-HHHhhhccCCCEEEeeCC-CcchhhH--H
Confidence 457799999999987554444332268999999999998 5553211000 012236899999999996 6665532 3
Q ss_pred cccCCCCccEEEecCCCCccc--ccchhhhhcCCCCcEEEEcccC
Q 036689 100 SVQSFNELKTIRVELCDQLSN--IFLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~ 142 (595)
.+..+++|++|++++|..... ++....+..+++|++|++++|.
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 367899999999999643321 2222334689999999999964
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=8.9e-12 Score=119.93 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=47.9
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
+++|++|++++|.++.+ +...+..+++|+.|+++++ .++.+++ ..++.+++|++|+++++. ++.++...+..
T Consensus 106 l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 177 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSL-----PSGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPHGAFDR 177 (251)
T ss_dssp CTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred cCCCCEEEcCCCcCCCc-----ChhHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEECCCCc-CCccCHHHHhC
Confidence 45566666666655544 3322244666777777654 4555433 234666777777777765 66555422221
Q ss_pred CCCCCCcCCCcccEEeecCCC
Q 036689 302 DQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~ 322 (595)
+++|+.|++.+++
T Consensus 178 --------l~~L~~L~l~~N~ 190 (251)
T 3m19_A 178 --------LGKLQTITLFGNQ 190 (251)
T ss_dssp --------CTTCCEEECCSCC
T ss_pred --------CCCCCEEEeeCCc
Confidence 6667777776644
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.33 E-value=1.3e-11 Score=118.77 Aligned_cols=177 Identities=18% Similarity=0.213 Sum_probs=120.4
Q ss_pred ccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccc
Q 036689 22 KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSV 101 (595)
Q Consensus 22 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 101 (595)
.+.+++++.++.. ..++..+ .+++++|+++++ .++.+.+. .+..+++|++|+++++ .++.+.. ..+
T Consensus 14 ~~~~~l~~~~~~l-~~~p~~~----~~~l~~L~L~~n-~l~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~~~ 79 (251)
T 3m19_A 14 EGKKEVDCQGKSL-DSVPSGI----PADTEKLDLQST-GLATLSDA-----TFRGLTKLTWLNLDYN-QLQTLSA--GVF 79 (251)
T ss_dssp GGGTEEECTTCCC-SSCCSCC----CTTCCEEECTTS-CCCCCCTT-----TTTTCTTCCEEECTTS-CCCCCCT--TTT
T ss_pred CCCeEEecCCCCc-cccCCCC----CCCCCEEEccCC-CcCccCHh-----HhcCcccCCEEECCCC-cCCccCH--hHh
Confidence 4567888877765 4554433 368999999988 67666433 4667889999999995 6766532 236
Q ss_pred cCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccc
Q 036689 102 QSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSF 181 (595)
Q Consensus 102 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 181 (595)
..+++|++|+++++ .++.+++ ..+..+++|++|++++| .+..++..
T Consensus 80 ~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~------------------------------- 125 (251)
T 3m19_A 80 DDLTELGTLGLANN-QLASLPL-GVFDHLTQLDKLYLGGN-QLKSLPSG------------------------------- 125 (251)
T ss_dssp TTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-------------------------------
T ss_pred ccCCcCCEEECCCC-cccccCh-hHhcccCCCCEEEcCCC-cCCCcChh-------------------------------
Confidence 78899999999994 6776654 66788999999999884 44433210
Q ss_pred ccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEec
Q 036689 182 CCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRK 261 (595)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 261 (595)
.| ..+++|++|++++|.++.+ |...+..+++|+.|++++
T Consensus 126 ---------------------------------~~---~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 126 ---------------------------------VF---DRLTKLKELRLNTNQLQSI-----PAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp ---------------------------------TT---TTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS
T ss_pred ---------------------------------Hh---ccCCcccEEECcCCcCCcc-----CHHHcCcCcCCCEEECCC
Confidence 01 1356777777777777655 332224677888888876
Q ss_pred CCCCccccchhhhhccCCCcEEEeeccc
Q 036689 262 CPKLKYIFSASMLGSFEHLQHLEIRYCK 289 (595)
Q Consensus 262 c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 289 (595)
+ .++.+++ ..+..+++|++|+++++.
T Consensus 165 N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 165 N-QLQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp S-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred C-cCCccCH-HHHhCCCCCCEEEeeCCc
Confidence 4 5555543 345777888888888776
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=2.3e-13 Score=140.00 Aligned_cols=140 Identities=13% Similarity=0.108 Sum_probs=72.7
Q ss_pred CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCcccc---chh-hhhccCCCcEEEeecccccc-----e
Q 036689 223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIF---SAS-MLGSFEHLQHLEIRYCKGLQ-----E 293 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~---~~~-~~~~l~~L~~L~l~~c~~l~-----~ 293 (595)
++|++|++++|.++......+...+ ..+++|+.|++++| .++... ... .+..+++|++|++++|. ++ .
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~ 235 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTF-QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSA 235 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHH-HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHH-HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHH
Confidence 5666666666654421111111111 34667777777765 333110 011 34566777777777776 52 2
Q ss_pred ecccccCCCCCCCCcCCCcccEEeecCCCCcccc-----cCCCccccCcccceeeecCCCCcc----ccccccccccCCC
Q 036689 294 IISKEGADDQVPPNFVFPQVTILRLVGLPELKCL-----YPGMHTSEWPALKLLDVSACDQVT----VFDSELFSFCESS 364 (595)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-----~~~~~~~~~~~L~~L~l~~c~~l~----~l~~~~~~~~~~~ 364 (595)
++. ... .+++|++|++++|. +... +.......+++|+.|++++|.--. .+|.
T Consensus 236 l~~-~l~--------~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--------- 296 (386)
T 2ca6_A 236 LAI-ALK--------SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--------- 296 (386)
T ss_dssp HHH-HGG--------GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---------
T ss_pred HHH-HHc--------cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---------
Confidence 221 111 26777777777754 3221 111000126778888888775433 2554
Q ss_pred CCCCCCCCCCCCCCCcCccCCCcceEeccCCCCe
Q 036689 365 EEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIR 398 (595)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 398 (595)
.+...+++|++|++++|+..
T Consensus 297 --------------~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 297 --------------VIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp --------------HHHHHCTTCCEEECTTSBSC
T ss_pred --------------HHHhcCCCceEEEccCCcCC
Confidence 22245788888888888644
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=123.09 Aligned_cols=143 Identities=19% Similarity=0.146 Sum_probs=89.3
Q ss_pred CCccceeecccccceeecccCCCcccc-ccCCCccEEEEecCCCCccccc---hhhhhccCCCcEEEeecccccceeccc
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMF-LCFQNLTRLILRKCPKLKYIFS---ASMLGSFEHLQHLEIRYCKGLQEIISK 297 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~-~~l~~L~~L~L~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~ 297 (595)
+++|++|++++|.+.... |..++ ..+++|+.|+++++. ++...+ ...+..+++|++|++++|. ++.++..
T Consensus 90 ~~~L~~L~l~~n~l~~~~----~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTM----PPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCE 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCC----CCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTT
T ss_pred cCceeEEEeeCCEeccch----hhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHH
Confidence 567999999988776542 22211 357889999999864 433211 1123468899999999887 7766653
Q ss_pred ccCCCCCCCCcCCCcccEEeecCCCCccc--ccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCC
Q 036689 298 EGADDQVPPNFVFPQVTILRLVGLPELKC--LYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQ 375 (595)
Q Consensus 298 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 375 (595)
.+.. +++|++|+++++..... ++.......+++|++|++++|. ++.++...
T Consensus 164 ~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------------ 216 (310)
T 4glp_A 164 QVRA--------FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVC------------------ 216 (310)
T ss_dssp SCCC--------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHH------------------
T ss_pred Hhcc--------CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHH------------------
Confidence 3322 88899999998764332 2222222337888888888874 33332200
Q ss_pred CCCCcCccCCCcceEeccCCCCee
Q 036689 376 PLFLPEKVFPNLEELGLDGKDIRM 399 (595)
Q Consensus 376 ~l~~~~~~l~~L~~L~l~~~~~~~ 399 (595)
..+++.+++|++|++++|....
T Consensus 217 --~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 217 --AALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp --HHHHHHTCCCSSEECTTSCCCC
T ss_pred --HHHHhcCCCCCEEECCCCCCCc
Confidence 0113467888888888887544
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.28 E-value=2.5e-11 Score=119.50 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=52.6
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
..+++|++|++++| .++.+. ....+++|++|+++++ .++.+. . +..+++|++|++++| .++.+
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~-------~~~~l~~L~~L~L~~n-~l~~~~---~-l~~l~~L~~L~l~~n-~l~~~--- 105 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ-------GIQYLPNVTKLFLNGN-KLTDIK---P-LANLKNLGWLFLDEN-KVKDL--- 105 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCG---G-GTTCTTCCEEECCSS-CCCCG---
T ss_pred hhcCcccEEEccCC-CcccCh-------hHhcCCCCCEEEccCC-ccCCCc---c-cccCCCCCEEECCCC-cCCCC---
Confidence 56777888888777 555441 3456777777777775 555542 1 567777777777774 55654
Q ss_pred hhhhcCCCCcEEEEccc
Q 036689 125 SAAKCLPRLERIAVINC 141 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~c 141 (595)
+.+..+++|++|++++|
T Consensus 106 ~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp GGGTTCTTCCEEECTTS
T ss_pred hhhccCCCCCEEECCCC
Confidence 33667777777777774
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.28 E-value=3.3e-11 Score=118.60 Aligned_cols=172 Identities=21% Similarity=0.270 Sum_probs=127.5
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+++|++|++.++.. ..+ +.+ +.+++|++|++++| .++.+. ....+++|++|+++++ .++.+ .
T Consensus 44 ~l~~L~~L~l~~~~i-~~~-~~~--~~l~~L~~L~L~~n-~l~~~~-------~l~~l~~L~~L~l~~n-~l~~~----~ 106 (291)
T 1h6t_A 44 ELNSIDQIIANNSDI-KSV-QGI--QYLPNVTKLFLNGN-KLTDIK-------PLANLKNLGWLFLDEN-KVKDL----S 106 (291)
T ss_dssp HHHTCCEEECTTSCC-CCC-TTG--GGCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSS-CCCCG----G
T ss_pred hcCcccEEEccCCCc-ccC-hhH--hcCCCCCEEEccCC-ccCCCc-------ccccCCCCCEEECCCC-cCCCC----h
Confidence 789999999999876 344 334 78999999999998 676552 2568899999999996 67664 2
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 179 (595)
.+..+++|++|++++| .++++ +.+..+++|++|++++|. +..++
T Consensus 107 ~l~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~~------------------------------- 150 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK-ITDIT------------------------------- 150 (291)
T ss_dssp GGTTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCCG-------------------------------
T ss_pred hhccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcch-------------------------------
Confidence 3788999999999996 67765 457789999999999853 22210
Q ss_pred ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689 180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL 259 (595)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 259 (595)
....+++|+.|++++|.++.+ +. + ..+++|+.|++
T Consensus 151 --------------------------------------~l~~l~~L~~L~L~~N~l~~~-----~~-l-~~l~~L~~L~L 185 (291)
T 1h6t_A 151 --------------------------------------VLSRLTKLDTLSLEDNQISDI-----VP-L-AGLTKLQNLYL 185 (291)
T ss_dssp --------------------------------------GGGGCTTCSEEECCSSCCCCC-----GG-G-TTCTTCCEEEC
T ss_pred --------------------------------------hhccCCCCCEEEccCCccccc-----hh-h-cCCCccCEEEC
Confidence 011367788888888877665 22 2 46888888888
Q ss_pred ecCCCCccccchhhhhccCCCcEEEeeccccccee
Q 036689 260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEI 294 (595)
Q Consensus 260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 294 (595)
+++ .+++++. +..+++|++|+++++. +...
T Consensus 186 ~~N-~i~~l~~---l~~l~~L~~L~l~~n~-i~~~ 215 (291)
T 1h6t_A 186 SKN-HISDLRA---LAGLKNLDVLELFSQE-CLNK 215 (291)
T ss_dssp CSS-CCCBCGG---GTTCTTCSEEEEEEEE-EECC
T ss_pred CCC-cCCCChh---hccCCCCCEEECcCCc-ccCC
Confidence 875 5666432 5778888888888887 5543
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=6.6e-13 Score=135.31 Aligned_cols=119 Identities=10% Similarity=-0.056 Sum_probs=66.7
Q ss_pred cccccccccccEEEeccCCCCcccccc---ccccccC-CCcEEEcccCCCceEecCCCCCCCcCCc-----CCCccEEec
Q 036689 15 SKKLQGIKDVEYLCLDKSQDVKNVLFD---LDREGFL-QLKHLHVQNNPDFMCIVDSKERVPLDDA-----FPILESLNL 85 (595)
Q Consensus 15 ~~~~~~l~~L~~L~L~~~~~~~~~~~~---~~~~~l~-~L~~L~L~~~~~l~~i~~~~~~~~~~~~-----~~~L~~L~l 85 (595)
++.++..++|++|++++|.. +..... -....++ +|++|+|++| .++..... .+.. +++|++|++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~-----~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSD-----ELVQILAAIPANVTSLNL 87 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHH-----HHHHHHHTSCTTCCEEEC
T ss_pred HHHHhCCCCceEEEccCCCC-ChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHH-----HHHHHHhccCCCccEEEC
Confidence 33333556688888888875 333221 0115566 7888888887 55532111 1122 278888888
Q ss_pred cCccCcccccccc--ccccCC-CCccEEEecCCCCcccccchhh---hhc-CCCCcEEEEcccC
Q 036689 86 YNLIKLERICQDR--LSVQSF-NELKTIRVELCDQLSNIFLLSA---AKC-LPRLERIAVINCR 142 (595)
Q Consensus 86 ~~~~~l~~~~~~~--~~~~~l-~~L~~L~L~~c~~l~~~~~~~~---~~~-l~~L~~L~l~~c~ 142 (595)
+++ .+....... ..+..+ ++|++|++++| .+++.+.... +.. .++|++|++++|.
T Consensus 88 s~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 88 SGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp CSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred cCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 886 455431110 002233 67888888885 4665543221 223 3578888888753
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=1.1e-12 Score=133.73 Aligned_cols=108 Identities=13% Similarity=0.007 Sum_probs=56.5
Q ss_pred EEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCC-CccEEeccCccCccccccccccccC--
Q 036689 27 LCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFP-ILESLNLYNLIKLERICQDRLSVQS-- 103 (595)
Q Consensus 27 L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~-- 103 (595)
++++.+...+ ..+.+ ....++|++|+|++| .++..... .....+..++ +|++|+++++ .+...... .+..
T Consensus 3 ~~ls~n~~~~-~~~~~-~~~~~~L~~L~Ls~n-~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~--~l~~~l 75 (362)
T 3goz_A 3 YKLTLHPGSN-PVEEF-TSIPHGVTSLDLSLN-NLYSISTV-ELIQAFANTPASVTSLNLSGN-SLGFKNSD--ELVQIL 75 (362)
T ss_dssp EECCCCTTCC-HHHHH-HTSCTTCCEEECTTS-CGGGSCHH-HHHHHHHTCCTTCCEEECCSS-CGGGSCHH--HHHHHH
T ss_pred cccccccchH-HHHHH-HhCCCCceEEEccCC-CCChHHHH-HHHHHHHhCCCceeEEECcCC-CCCHHHHH--HHHHHH
Confidence 4455554432 22333 144455888888887 45533210 0001234456 7888888875 55543111 1222
Q ss_pred ---CCCccEEEecCCCCcccccchh---hhhcC-CCCcEEEEcccC
Q 036689 104 ---FNELKTIRVELCDQLSNIFLLS---AAKCL-PRLERIAVINCR 142 (595)
Q Consensus 104 ---l~~L~~L~L~~c~~l~~~~~~~---~~~~l-~~L~~L~l~~c~ 142 (595)
+++|++|++++| .+++..+.. .+..+ ++|++|++++|.
T Consensus 76 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 76 AAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred hccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 277888888875 455443211 23334 677888777754
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=5.5e-13 Score=137.19 Aligned_cols=256 Identities=14% Similarity=0.037 Sum_probs=137.6
Q ss_pred cccCCccceeecccccceeecccCCCccccccCCCccEEEEecC--CCCccccchhh------hhccCCCcEEEeecccc
Q 036689 219 KVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKC--PKLKYIFSASM------LGSFEHLQHLEIRYCKG 290 (595)
Q Consensus 219 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c--~~l~~l~~~~~------~~~l~~L~~L~l~~c~~ 290 (595)
+..+++|+.|++++|.+.......++..+ ..+++|++|++++| ..++...+..+ +..+++|++|++++|.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 105 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA- 105 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-
Confidence 34578899999999977654332223222 46889999999987 33333222221 3678999999999987
Q ss_pred cceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCc---cccC---------cccceeeecCCCCc-ccccccc
Q 036689 291 LQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMH---TSEW---------PALKLLDVSACDQV-TVFDSEL 357 (595)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~---~~~~---------~~L~~L~l~~c~~l-~~l~~~~ 357 (595)
++......... ....+++|++|++++|. +........ ...+ ++|++|++++|..- ..++.
T Consensus 106 l~~~~~~~l~~----~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-- 178 (386)
T 2ca6_A 106 FGPTAQEPLID----FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE-- 178 (386)
T ss_dssp CCTTTHHHHHH----HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH--
T ss_pred CCHHHHHHHHH----HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH--
Confidence 65411000000 01127899999999875 332111000 0012 78888888887532 12221
Q ss_pred ccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC
Q 036689 358 FSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL 437 (595)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~ 437 (595)
+...+..+++|++|++++|..... .+..+.
T Consensus 179 -------------------l~~~l~~~~~L~~L~L~~n~l~~~-------------------------------g~~~l~ 208 (386)
T 2ca6_A 179 -------------------WAKTFQSHRLLHTVKMVQNGIRPE-------------------------------GIEHLL 208 (386)
T ss_dssp -------------------HHHHHHHCTTCCEEECCSSCCCHH-------------------------------HHHHHH
T ss_pred -------------------HHHHHHhCCCcCEEECcCCCCCHh-------------------------------HHHHHH
Confidence 001134577888888888753310 000111
Q ss_pred CCCccccCCccEEeEeCCCCCccc---ccchHHhhcccccEEEEcCcccccchhcccCccccccc--cccccccceeccc
Q 036689 438 PSSSVSFRNLKILEVSGCKKLTNL---VASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREE--IVFNKLKMLSLLD 512 (595)
Q Consensus 438 ~~~~~~l~~L~~L~l~~c~~l~~~---~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~--~~l~~L~~L~l~~ 512 (595)
+..+..+++|+.|++++| .+++. .....+..+++|++|++++|. +......... ... ..+++|+.|++++
T Consensus 209 ~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~---~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 209 LEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVV---DAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp HTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHH---HHHHTCSSCCCCEEECCS
T ss_pred HHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHH---HHHhhccCCCeEEEECcC
Confidence 123445667777777764 34310 011234566777777777775 4333110000 000 0156777777777
Q ss_pred cccccc-----cccCcccccCCCccEEEEeCCC
Q 036689 513 LDSLTS-----FCSGNYIFKFPSLEVLFVVGCP 540 (595)
Q Consensus 513 ~~~l~~-----l~~~~~~~~~~~L~~L~l~~C~ 540 (595)
| .++. ++.... ..+|+|++|++++|+
T Consensus 284 n-~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 284 N-EIELDAVRTLKTVID-EKMPDLLFLELNGNR 314 (386)
T ss_dssp S-CCBHHHHHHHHHHHH-HHCTTCCEEECTTSB
T ss_pred C-cCCHHHHHHHHHHHH-hcCCCceEEEccCCc
Confidence 5 3444 543321 136777788777764
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=5.3e-11 Score=128.75 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=44.3
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceec
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEII 295 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~ 295 (595)
.+++|+.|++++|.+..+ +. + ..+++|+.|+|++| .+++++ .+..+++|+.|++++|. +...+
T Consensus 151 ~l~~L~~L~Ls~N~l~~~-----~~-l-~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDI-----VP-L-AGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp SCTTCSEEECCSSCCCCC-----GG-G-TTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEECCSEE-EECCC
T ss_pred ccCCCCEEECcCCcCCCc-----hh-h-ccCCCCCEEECcCC-CCCCCh---HHccCCCCCEEEccCCc-CcCCc
Confidence 467888888888877655 22 2 46788888888876 566542 35778888888888887 55443
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=2.1e-10 Score=105.84 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=47.0
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
+.+++|++|+++++ .++.++ ....+++|++|+++++ .++.+ ..+..+++|++|++++| .++...+
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-------~l~~l~~L~~L~l~~n-~~~~~----~~l~~l~~L~~L~l~~n-~l~~~~~- 105 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-------GIEYAHNIKDLTINNI-HATNY----NPISGLSNLERLRIMGK-DVTSDKI- 105 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-------TGGGCTTCSEEEEESC-CCSCC----GGGTTCTTCCEEEEECT-TCBGGGS-
T ss_pred hhcCCccEEeccCC-CccChH-------HHhcCCCCCEEEccCC-CCCcc----hhhhcCCCCCEEEeECC-ccCcccC-
Confidence 56666677777666 444331 2445666777777665 44433 13556667777777764 4443222
Q ss_pred hhhhcCCCCcEEEEccc
Q 036689 125 SAAKCLPRLERIAVINC 141 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~c 141 (595)
..++.+++|++|++++|
T Consensus 106 ~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHS 122 (197)
T ss_dssp CCCTTCTTCCEEECCSS
T ss_pred hhhcCCCCCCEEEecCC
Confidence 44556667777777664
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=7.5e-11 Score=127.54 Aligned_cols=189 Identities=19% Similarity=0.242 Sum_probs=125.1
Q ss_pred cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
+.++..+.+..... .++. . ...+++|+.|.++++ .+..++ .+..+++|++|+|+++ .+..+. +
T Consensus 20 l~~l~~l~l~~~~i-~~~~-~--~~~L~~L~~L~l~~n-~i~~l~-------~l~~l~~L~~L~Ls~N-~l~~~~----~ 82 (605)
T 1m9s_A 20 FAETIKDNLKKKSV-TDAV-T--QNELNSIDQIIANNS-DIKSVQ-------GIQYLPNVTKLFLNGN-KLTDIK----P 82 (605)
T ss_dssp HHHHHHHHTTCSCT-TSEE-C--HHHHTTCCCCBCTTC-CCCCCT-------TGGGCTTCCEEECTTS-CCCCCG----G
T ss_pred HHHHHHHhccCCCc-cccc-c--hhcCCCCCEEECcCC-CCCCCh-------HHccCCCCCEEEeeCC-CCCCCh----h
Confidence 34444555544433 2221 1 257788888888777 455441 3456777888888775 555542 1
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 180 (595)
+..+++|+.|+|++| .++.+ +.+..+++|++|++++|. +..++
T Consensus 83 l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~l~-------------------------------- 125 (605)
T 1m9s_A 83 LTNLKNLGWLFLDEN-KIKDL---SSLKDLKKLKSLSLEHNG-ISDIN-------------------------------- 125 (605)
T ss_dssp GGGCTTCCEEECCSS-CCCCC---TTSTTCTTCCEEECTTSC-CCCCG--------------------------------
T ss_pred hccCCCCCEEECcCC-CCCCC---hhhccCCCCCEEEecCCC-CCCCc--------------------------------
Confidence 567778888888875 55654 346677777777777743 22111
Q ss_pred cccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689 181 FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR 260 (595)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~ 260 (595)
....+++|+.|++++|.++.+ +.. ..+++|+.|+|+
T Consensus 126 -------------------------------------~l~~l~~L~~L~Ls~N~l~~l-----~~l--~~l~~L~~L~Ls 161 (605)
T 1m9s_A 126 -------------------------------------GLVHLPQLESLYLGNNKITDI-----TVL--SRLTKLDTLSLE 161 (605)
T ss_dssp -------------------------------------GGGGCTTCSEEECCSSCCCCC-----GGG--GSCTTCSEEECC
T ss_pred -------------------------------------cccCCCccCEEECCCCccCCc-----hhh--cccCCCCEEECc
Confidence 112477888999998877765 221 478999999999
Q ss_pred cCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689 261 KCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 261 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 322 (595)
+| .+..+.+ +..+++|++|++++|. +.+++. .. .+++|+.|+|++++
T Consensus 162 ~N-~l~~~~~---l~~l~~L~~L~Ls~N~-i~~l~~--l~--------~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 162 DN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLRA--LA--------GLKNLDVLELFSQE 208 (605)
T ss_dssp SS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG--GT--------TCTTCSEEECCSEE
T ss_pred CC-cCCCchh---hccCCCCCEEECcCCC-CCCChH--Hc--------cCCCCCEEEccCCc
Confidence 86 5666544 5889999999999997 877643 22 28999999999865
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.15 E-value=1.8e-10 Score=106.31 Aligned_cols=131 Identities=13% Similarity=0.208 Sum_probs=90.4
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+++|+.|+++++.++.+ | .+ ..+++|++|++++| .++.+. .+..+++|++|++++|. ++........
T Consensus 42 ~l~~L~~L~l~~n~i~~l-----~-~l-~~l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~l~ 109 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDL-----T-GI-EYAHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKD-VTSDKIPNLS 109 (197)
T ss_dssp HHHTCCEEEEESSCCSCC-----T-TG-GGCTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTT-CBGGGSCCCT
T ss_pred hcCCccEEeccCCCccCh-----H-HH-hcCCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCc-cCcccChhhc
Confidence 467889999998877765 4 22 57889999999987 555532 35788999999999887 6653332222
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP 380 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (595)
.+++|++|+++++.-....+.. ...+++|+.|++++|..++.++.
T Consensus 110 --------~l~~L~~L~Ls~n~i~~~~~~~--l~~l~~L~~L~L~~n~~i~~~~~------------------------- 154 (197)
T 4ezg_A 110 --------GLTSLTLLDISHSAHDDSILTK--INTLPKVNSIDLSYNGAITDIMP------------------------- 154 (197)
T ss_dssp --------TCTTCCEEECCSSBCBGGGHHH--HTTCSSCCEEECCSCTBCCCCGG-------------------------
T ss_pred --------CCCCCCEEEecCCccCcHhHHH--HhhCCCCCEEEccCCCCccccHh-------------------------
Confidence 2788999999886532212211 12378888888888876666654
Q ss_pred CccCCCcceEeccCCCCe
Q 036689 381 EKVFPNLEELGLDGKDIR 398 (595)
Q Consensus 381 ~~~l~~L~~L~l~~~~~~ 398 (595)
+..+++|++|++++|...
T Consensus 155 l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp GGGCSSCCEEECTTBCCC
T ss_pred hcCCCCCCEEECCCCCCc
Confidence 467788888888887643
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=5.9e-10 Score=119.29 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=32.7
Q ss_pred CCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhh
Q 036689 49 QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK 128 (595)
Q Consensus 49 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~ 128 (595)
+|++|+++++ .++.++.. .+++|++|+++++ +++.++ ..+++|++|++++| .++.+|. +.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~--------l~~~L~~L~Ls~N-~l~~ip------~~l~~L~~L~Ls~N-~l~~ip~---l~ 119 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN--------LPPQITVLEITQN-ALISLP------ELPASLEYLDACDN-RLSTLPE---LP 119 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC--------CCTTCSEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC---CC
T ss_pred CccEEEeCCC-CCCccCHh--------HcCCCCEEECcCC-CCcccc------cccCCCCEEEccCC-CCCCcch---hh
Confidence 5555555555 34433211 1245555555553 444331 23455555555553 4444331 22
Q ss_pred cCCCCcEEEEcc
Q 036689 129 CLPRLERIAVIN 140 (595)
Q Consensus 129 ~l~~L~~L~l~~ 140 (595)
. +|++|++++
T Consensus 120 ~--~L~~L~Ls~ 129 (571)
T 3cvr_A 120 A--SLKHLDVDN 129 (571)
T ss_dssp T--TCCEEECCS
T ss_pred c--CCCEEECCC
Confidence 2 555555555
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.09 E-value=4.1e-10 Score=114.47 Aligned_cols=174 Identities=20% Similarity=0.163 Sum_probs=115.8
Q ss_pred cEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCC-cCCCccEEeccCccCccccccccccccC
Q 036689 25 EYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDD-AFPILESLNLYNLIKLERICQDRLSVQS 103 (595)
Q Consensus 25 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 103 (595)
+.+++.++.. +.++..+ .+++++|+|++| .++.+.+. .+. .+++|++|+++++ ++..+... .+..
T Consensus 21 ~~l~c~~~~l-~~iP~~~----~~~l~~L~Ls~N-~l~~l~~~-----~~~~~l~~L~~L~L~~N-~i~~i~~~--~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQL-PNVPQSL----PSYTALLDLSHN-NLSRLRAE-----WTPTRLTNLHSLLLSHN-HLNFISSE--AFVP 86 (361)
T ss_dssp TEEECCSSCC-SSCCSSC----CTTCSEEECCSS-CCCEECTT-----SSSSCCTTCCEEECCSS-CCCEECTT--TTTT
T ss_pred CEEEeCCCCc-CccCccC----CCCCCEEECCCC-CCCccChh-----hhhhcccccCEEECCCC-cCCccChh--hccC
Confidence 5677776654 4444333 456899999998 78887544 344 7899999999985 77776432 3678
Q ss_pred CCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccccc
Q 036689 104 FNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCC 183 (595)
Q Consensus 104 l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 183 (595)
+++|++|+|++ +.++.+++ ..+.++++|++|++++| .+..+...
T Consensus 87 l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~--------------------------------- 130 (361)
T 2xot_A 87 VPNLRYLDLSS-NHLHTLDE-FLFSDLQALEVLLLYNN-HIVVVDRN--------------------------------- 130 (361)
T ss_dssp CTTCCEEECCS-SCCCEECT-TTTTTCTTCCEEECCSS-CCCEECTT---------------------------------
T ss_pred CCCCCEEECCC-CcCCcCCH-HHhCCCcCCCEEECCCC-cccEECHH---------------------------------
Confidence 89999999999 46777654 56788999999999884 34333210
Q ss_pred ccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCcccc---ccCCCccEEEEe
Q 036689 184 EVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMF---LCFQNLTRLILR 260 (595)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~---~~l~~L~~L~L~ 260 (595)
.| ..+++|+.|++++|.++.+ |..++ ..+++|+.|+|+
T Consensus 131 -------------------------------~~---~~l~~L~~L~L~~N~l~~l-----~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 131 -------------------------------AF---EDMAQLQKLYLSQNQISRF-----PVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp -------------------------------TT---TTCTTCCEEECCSSCCCSC-----CGGGTC----CTTCCEEECC
T ss_pred -------------------------------Hh---CCcccCCEEECCCCcCCee-----CHHHhcCcccCCcCCEEECC
Confidence 01 1356677777777766655 44332 246778888887
Q ss_pred cCCCCccccchhhhhccCC--CcEEEeeccc
Q 036689 261 KCPKLKYIFSASMLGSFEH--LQHLEIRYCK 289 (595)
Q Consensus 261 ~c~~l~~l~~~~~~~~l~~--L~~L~l~~c~ 289 (595)
++ .++.++. ..+..++. ++.|++.++.
T Consensus 172 ~N-~l~~l~~-~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 172 SN-KLKKLPL-TDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SS-CCCCCCH-HHHHHSCHHHHTTEECCSSC
T ss_pred CC-CCCccCH-HHhhhccHhhcceEEecCCC
Confidence 64 5666533 34566666 4778877765
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=1.1e-09 Score=111.38 Aligned_cols=174 Identities=19% Similarity=0.235 Sum_probs=120.8
Q ss_pred cEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccccc-CCCCccEEEecCCCCcccccchhhhhc
Q 036689 51 KHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQ-SFNELKTIRVELCDQLSNIFLLSAAKC 129 (595)
Q Consensus 51 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~~~~~~~~~~ 129 (595)
++++++++ +++.++. ...+.+++|+|+++ +++.+.... +. .+++|++|++++ +.++.+++ ..+.+
T Consensus 21 ~~l~c~~~-~l~~iP~--------~~~~~l~~L~Ls~N-~l~~l~~~~--~~~~l~~L~~L~L~~-N~i~~i~~-~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQ--------SLPSYTALLDLSHN-NLSRLRAEW--TPTRLTNLHSLLLSH-NHLNFISS-EAFVP 86 (361)
T ss_dssp TEEECCSS-CCSSCCS--------SCCTTCSEEECCSS-CCCEECTTS--SSSCCTTCCEEECCS-SCCCEECT-TTTTT
T ss_pred CEEEeCCC-CcCccCc--------cCCCCCCEEECCCC-CCCccChhh--hhhcccccCEEECCC-CcCCccCh-hhccC
Confidence 57888776 6665532 23456899999995 777764332 34 789999999999 47787764 56788
Q ss_pred CCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccc
Q 036689 130 LPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKL 209 (595)
Q Consensus 130 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (595)
+++|++|++++| .+..++..
T Consensus 87 l~~L~~L~Ls~N-~l~~~~~~----------------------------------------------------------- 106 (361)
T 2xot_A 87 VPNLRYLDLSSN-HLHTLDEF----------------------------------------------------------- 106 (361)
T ss_dssp CTTCCEEECCSS-CCCEECTT-----------------------------------------------------------
T ss_pred CCCCCEEECCCC-cCCcCCHH-----------------------------------------------------------
Confidence 999999999984 44443311
Q ss_pred cCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhh---hccCCCcEEEee
Q 036689 210 DISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML---GSFEHLQHLEIR 286 (595)
Q Consensus 210 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~---~~l~~L~~L~l~ 286 (595)
.| ..+++|+.|++++|.++.+... . +..+++|+.|+|+++ .++.++. ..+ ..+++|++|+++
T Consensus 107 -----~~---~~l~~L~~L~L~~N~i~~~~~~----~-~~~l~~L~~L~L~~N-~l~~l~~-~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 107 -----LF---SDLQALEVLLLYNNHIVVVDRN----A-FEDMAQLQKLYLSQN-QISRFPV-ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp -----TT---TTCTTCCEEECCSSCCCEECTT----T-TTTCTTCCEEECCSS-CCCSCCG-GGTC----CTTCCEEECC
T ss_pred -----Hh---CCCcCCCEEECCCCcccEECHH----H-hCCcccCCEEECCCC-cCCeeCH-HHhcCcccCCcCCEEECC
Confidence 01 1467899999999988776322 2 257899999999975 6776544 333 568999999999
Q ss_pred cccccceecccccCCCCCCCCcCCCc--ccEEeecCCC
Q 036689 287 YCKGLQEIISKEGADDQVPPNFVFPQ--VTILRLVGLP 322 (595)
Q Consensus 287 ~c~~l~~~~~~~~~~~~~~~~~~l~~--L~~L~L~~~~ 322 (595)
++. ++.++...+.. ++. |+.|++.+++
T Consensus 172 ~N~-l~~l~~~~~~~--------l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 172 SNK-LKKLPLTDLQK--------LPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSC-CCCCCHHHHHH--------SCHHHHTTEECCSSC
T ss_pred CCC-CCccCHHHhhh--------ccHhhcceEEecCCC
Confidence 987 88776533322 565 4889998865
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.08 E-value=2.4e-10 Score=110.61 Aligned_cols=99 Identities=15% Similarity=0.229 Sum_probs=51.8
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
.+.++..+++.++.. .+++ .+ ..+++|++|++++| +++.++ ....+++|++|+++++ .++.+. .
T Consensus 17 ~l~~l~~l~l~~~~i-~~~~-~~--~~l~~L~~L~l~~n-~i~~l~-------~l~~l~~L~~L~L~~N-~i~~~~---~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSV-TDLV-SQ--KELSGVQNFNGDNS-NIQSLA-------GMQFFTNLKELHLSHN-QISDLS---P 80 (263)
T ss_dssp HHHHHHHHHHTCSCT-TSEE-CH--HHHTTCSEEECTTS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCG---G
T ss_pred HHHHHHHHHhcCCCc-cccc-ch--hhcCcCcEEECcCC-Ccccch-------HHhhCCCCCEEECCCC-ccCCCh---h
Confidence 345556666655544 2332 22 56677777777666 454331 2345566666666664 444431 1
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN 140 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 140 (595)
+..+++|++|++++| .+++++. +.. ++|++|++++
T Consensus 81 -l~~l~~L~~L~L~~N-~l~~l~~---~~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRN-RLKNLNG---IPS-ACLSRLFLDN 115 (263)
T ss_dssp -GTTCSSCCEEECCSS-CCSCCTT---CCC-SSCCEEECCS
T ss_pred -hccCCCCCEEECCCC-ccCCcCc---ccc-CcccEEEccC
Confidence 455666666666663 4454431 112 5556665555
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.07 E-value=5.7e-10 Score=103.86 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=64.2
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
..+++++|+++++... .+++.. .+.+++|++|+++++ .++.+++. .+..+++|++|+++++ .++.+...
T Consensus 26 ~~~~l~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~~~-- 94 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLK-SLPNGV-FDELTSLTQLYLGGN-KLQSLPNG-----VFNKLTSLTYLNLSTN-QLQSLPNG-- 94 (208)
T ss_dssp CCTTCSEEECCSSCCC-CCCTTT-TTTCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT--
T ss_pred CCCCCcEEEcCCCccC-cCChhh-hcccccCcEEECCCC-ccCccChh-----hcCCCCCcCEEECCCC-cCCccCHh--
Confidence 3456777777777553 332221 256777777777776 55544322 3455677777777774 55544221
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC 141 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 141 (595)
.+..+++|++|+++++ .++.+++ ..+..+++|++|++++|
T Consensus 95 ~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 95 VFDKLTQLKELALNTN-QLQSLPD-GVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred HhcCccCCCEEEcCCC-cCcccCH-hHhccCCcCCEEECCCC
Confidence 2456677777777773 5565543 44566777777777763
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.05 E-value=2.1e-09 Score=114.95 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=122.3
Q ss_pred CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689 223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD 302 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 302 (595)
.+++.|++++++++.+ |..+ +++|+.|+++++ .++.++ ..+++|++|++++|. ++.++. .
T Consensus 59 ~~L~~L~Ls~n~L~~l-----p~~l---~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~-l~~ip~--l--- 118 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-----PDNL---PPQITVLEITQN-ALISLP-----ELPASLEYLDACDNR-LSTLPE--L--- 118 (571)
T ss_dssp TTCSEEECCSSCCSCC-----CSCC---CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC--C---
T ss_pred CCccEEEeCCCCCCcc-----CHhH---cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCC-CCCcch--h---
Confidence 4799999999988765 7654 588999999975 566653 457899999999987 777654 1
Q ss_pred CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689 303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK 382 (595)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 382 (595)
..+|+.|+++++. +..++. .+++|+.|+++++. ++.+|.
T Consensus 119 -------~~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--------------------------- 157 (571)
T 3cvr_A 119 -------PASLKHLDVDNNQ-LTMLPE-----LPALLEYINADNNQ-LTMLPE--------------------------- 157 (571)
T ss_dssp -------CTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSCCCC---------------------------
T ss_pred -------hcCCCEEECCCCc-CCCCCC-----cCccccEEeCCCCc-cCcCCC---------------------------
Confidence 2389999999854 555554 27899999998874 444444
Q ss_pred cCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCc-------cEEeEeCC
Q 036689 383 VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNL-------KILEVSGC 455 (595)
Q Consensus 383 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L-------~~L~l~~c 455 (595)
.+++|++|++++|+...+.. +. ++|+.|+++ .+.+..++. +.. +| +.|++++
T Consensus 158 ~l~~L~~L~Ls~N~L~~lp~--l~----~~L~~L~Ls----------~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~- 216 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTFLPE--LP----ESLEALDVS----------TNLLESLPA--VPV--RNHHSEETEIFFRCRE- 216 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC--CC----TTCCEEECC----------SSCCSSCCC--CC----------CCEEEECCS-
T ss_pred cCCCcCEEECCCCCCCCcch--hh----CCCCEEECc----------CCCCCchhh--HHH--hhhcccccceEEecCC-
Confidence 46889999999987554322 11 678888883 345655444 322 56 8888887
Q ss_pred CCCcccccchHHhhcccccEEEEcCcc
Q 036689 456 KKLTNLVASSAAQSLVALVKMQVFGCR 482 (595)
Q Consensus 456 ~~l~~~~~~~~~~~l~~L~~L~l~~c~ 482 (595)
+.++.++ ..+ ..+++|++|++++|+
T Consensus 217 N~l~~lp-~~l-~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 217 NRITHIP-ENI-LSLDPTCTIILEDNP 241 (571)
T ss_dssp SCCCCCC-GGG-GGSCTTEEEECCSSS
T ss_pred CcceecC-HHH-hcCCCCCEEEeeCCc
Confidence 5677663 333 447888888888876
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=7.6e-10 Score=103.00 Aligned_cols=132 Identities=20% Similarity=0.172 Sum_probs=63.8
Q ss_pred CCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcce
Q 036689 310 FPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEE 389 (595)
Q Consensus 310 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 389 (595)
.++|++|+++++. +..++... ...+++|++|+++++ .++.++. ..+..+++|++
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-----------------------~~~~~l~~L~~ 80 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPNGV-FDELTSLTQLYLGGN-KLQSLPN-----------------------GVFNKLTSLTY 80 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCTTT-TTTCTTCSEEECCSS-CCCCCCT-----------------------TTTTTCTTCCE
T ss_pred CCCCcEEEcCCCc-cCcCChhh-hcccccCcEEECCCC-ccCccCh-----------------------hhcCCCCCcCE
Confidence 5677888887743 44443322 123677777777765 3444444 22356677777
Q ss_pred EeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhh
Q 036689 390 LGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQS 469 (595)
Q Consensus 390 L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 469 (595)
|++++|....+... ....+++|+.|++. .+.+..+++..+..+++|+.|++++ +.++.+++ ..+..
T Consensus 81 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~----------~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~-~~~~~ 146 (208)
T 2o6s_A 81 LNLSTNQLQSLPNG--VFDKLTQLKELALN----------TNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPD-GVFDR 146 (208)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECC----------SSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT-TTTTT
T ss_pred EECCCCcCCccCHh--HhcCccCCCEEEcC----------CCcCcccCHhHhccCCcCCEEECCC-CccceeCH-HHhcc
Confidence 77777754432111 11233444444442 2333333333334444455555544 23333321 22334
Q ss_pred cccccEEEEcCc
Q 036689 470 LVALVKMQVFGC 481 (595)
Q Consensus 470 l~~L~~L~l~~c 481 (595)
+++|++|+++++
T Consensus 147 l~~L~~L~l~~N 158 (208)
T 2o6s_A 147 LTSLQYIWLHDN 158 (208)
T ss_dssp CTTCCEEECCSC
T ss_pred CCCccEEEecCC
Confidence 444444444444
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=6.2e-10 Score=111.57 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=78.5
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCc-EEEeecccccceecccccC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQ-HLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~ 300 (595)
+++|+.+++++++++.+ |...|..+++|+.+++.+ +++.+.. ..+.++++|+ .+.+.+ +++.++...+.
T Consensus 225 ~~~L~~l~L~~n~i~~I-----~~~aF~~~~~L~~l~l~~--ni~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-----PDFTFAQKKYLLKIKLPH--NLKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFGAFM 294 (329)
T ss_dssp CTTCCEEECTTBCCCEE-----CTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEEEECT--TCCEECTTTTT
T ss_pred cCCCeEEECCCCCccee-----cHhhhhCCCCCCEEECCc--ccceehH-HHhhCChhccEEEEEcc--cceEEchhhhh
Confidence 78999999999989888 555557889999999986 4777644 4568999999 999988 48888876665
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceee
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLD 343 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~ 343 (595)
+ +++|+.+++.+ ..+..++..... .+++|+.++
T Consensus 295 ~--------c~~L~~l~l~~-n~i~~I~~~aF~-~~~~L~~ly 327 (329)
T 3sb4_A 295 G--------CDNLRYVLATG-DKITTLGDELFG-NGVPSKLIY 327 (329)
T ss_dssp T--------CTTEEEEEECS-SCCCEECTTTTC-TTCCCCEEE
T ss_pred C--------CccCCEEEeCC-CccCccchhhhc-CCcchhhhc
Confidence 5 89999999976 446666554322 267777765
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.02 E-value=2.3e-09 Score=100.59 Aligned_cols=85 Identities=14% Similarity=0.253 Sum_probs=43.3
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
+++|++|++++|.++.+ +...+..+++|++|+++++ .++.+.+. .+..+++|++|+++++. ++.+++..+..
T Consensus 80 l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 151 (220)
T 2v70_A 80 ASGVNEILLTSNRLENV-----QHKMFKGLESLKTLMLRSN-RITCVGND-SFIGLSSVRLLSLYDNQ-ITTVAPGAFDT 151 (220)
T ss_dssp CTTCCEEECCSSCCCCC-----CGGGGTTCSSCCEEECTTS-CCCCBCTT-SSTTCTTCSEEECTTSC-CCCBCTTTTTT
T ss_pred CCCCCEEECCCCccCcc-----CHhHhcCCcCCCEEECCCC-cCCeECHh-HcCCCccCCEEECCCCc-CCEECHHHhcC
Confidence 44555555555555444 2222234566666666653 34443332 33556666666666665 55554322222
Q ss_pred CCCCCCcCCCcccEEeecCCC
Q 036689 302 DQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~ 322 (595)
+++|+.|++++++
T Consensus 152 --------l~~L~~L~L~~N~ 164 (220)
T 2v70_A 152 --------LHSLSTLNLLANP 164 (220)
T ss_dssp --------CTTCCEEECCSCC
T ss_pred --------CCCCCEEEecCcC
Confidence 5666666666643
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.01 E-value=1.2e-09 Score=102.59 Aligned_cols=133 Identities=14% Similarity=0.193 Sum_probs=102.2
Q ss_pred cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
.++++.|+++++... .+++. ....+++|++|+|++| .++.+.+. .+..+++|++|+++++ .++.+... .
T Consensus 31 ~~~l~~L~l~~n~i~-~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~--~ 99 (220)
T 2v9t_B 31 PETITEIRLEQNTIK-VIPPG-AFSPYKKLRRIDLSNN-QISELAPD-----AFQGLRSLNSLVLYGN-KITELPKS--L 99 (220)
T ss_dssp CTTCCEEECCSSCCC-EECTT-SSTTCTTCCEEECCSS-CCCEECTT-----TTTTCSSCCEEECCSS-CCCCCCTT--T
T ss_pred CcCCCEEECCCCcCC-CcCHh-HhhCCCCCCEEECCCC-cCCCcCHH-----HhhCCcCCCEEECCCC-cCCccCHh--H
Confidence 478999999999773 44332 2278999999999999 78887554 5778899999999996 77776333 2
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCC
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLP 176 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 176 (595)
+..+++|++|++++ +.++.+++ ..+..+++|++|++++| .+..++.. ....+++|+.|++++.+
T Consensus 100 f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~---------~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 100 FEGLFSLQLLLLNA-NKINCLRV-DAFQDLHNLNLLSLYDN-KLQTIAKG---------TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTT---------TTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCC-CCCCEeCH-HHcCCCCCCCEEECCCC-cCCEECHH---------HHhCCCCCCEEEeCCCC
Confidence 57899999999999 47787755 67889999999999994 55555421 23357889999998865
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.01 E-value=3e-09 Score=99.82 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=58.6
Q ss_pred eeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689 3 TLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 81 (595)
Q Consensus 3 ~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 81 (595)
.|+|..|.+ .+.+..++.+++|++|+|+++......+..+ .++++|++|+|++| .++.+++. .+..+++|+
T Consensus 36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~-----~f~~l~~L~ 107 (220)
T 2v9t_B 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLYGN-KITELPKS-----LFEGLFSLQ 107 (220)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECCSS-CCCCCCTT-----TTTTCTTCC
T ss_pred EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECCCC-cCCccCHh-----HccCCCCCC
Confidence 344444433 1223344455555555555554422112222 45555555555555 44444222 234455555
Q ss_pred EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689 82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC 141 (595)
Q Consensus 82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 141 (595)
+|+++++ .+..+.. ..+..+++|++|++++ +.++.+++ ..+..+++|++|+++++
T Consensus 108 ~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 108 LLLLNAN-KINCLRV--DAFQDLHNLNLLSLYD-NKLQTIAK-GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSS-CCCCCCT--TTTTTCTTCCEEECCS-SCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred EEECCCC-CCCEeCH--HHcCCCCCCCEEECCC-CcCCEECH-HHHhCCCCCCEEEeCCC
Confidence 5555553 4444321 1244555555555555 24444432 33445555555555553
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.99 E-value=7.5e-10 Score=107.08 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=80.9
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+.++..++++++.++++ +. + ..+++|+.|+++++ .++.++ .++.+++|++|++++|. +++++. ..
T Consensus 17 ~l~~l~~l~l~~~~i~~~-----~~-~-~~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N~-i~~~~~--l~ 82 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-----VS-Q-KELSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHNQ-ISDLSP--LK 82 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-----EC-H-HHHTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSSC-CCCCGG--GT
T ss_pred HHHHHHHHHhcCCCcccc-----cc-h-hhcCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCCc-cCCChh--hc
Confidence 355666777777766655 31 1 46788888888876 566553 35778888888888887 776654 21
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP 380 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (595)
.+++|+.|+++++. +..++... .++|+.|++++|. ++.++.
T Consensus 83 --------~l~~L~~L~L~~N~-l~~l~~~~----~~~L~~L~L~~N~-l~~~~~------------------------- 123 (263)
T 1xeu_A 83 --------DLTKLEELSVNRNR-LKNLNGIP----SACLSRLFLDNNE-LRDTDS------------------------- 123 (263)
T ss_dssp --------TCSSCCEEECCSSC-CSCCTTCC----CSSCCEEECCSSC-CSBSGG-------------------------
T ss_pred --------cCCCCCEEECCCCc-cCCcCccc----cCcccEEEccCCc-cCCChh-------------------------
Confidence 27888888888853 54443321 2777777777763 443433
Q ss_pred CccCCCcceEeccCCCC
Q 036689 381 EKVFPNLEELGLDGKDI 397 (595)
Q Consensus 381 ~~~l~~L~~L~l~~~~~ 397 (595)
+..+++|++|++++|+.
T Consensus 124 l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp GTTCTTCCEEECTTSCC
T ss_pred hcCcccccEEECCCCcC
Confidence 45677777777777753
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.99 E-value=3.1e-09 Score=100.41 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=101.0
Q ss_pred ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689 20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL 99 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 99 (595)
..++|++|+++++......+..+ +.+++|++|+|++| .++.+++. .+..+++|++|+++++ .++.+...
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N-~l~~i~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~-- 106 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSN-QLGALPVG-----VFDSLTQLTVLDLGTN-QLTVLPSA-- 106 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT--
T ss_pred CCCCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCC-CCCCcChh-----hcccCCCcCEEECCCC-cCCccChh--
Confidence 34889999999998754333334 78999999999998 67766433 4578899999999996 77766332
Q ss_pred cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCC
Q 036689 100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLP 176 (595)
Q Consensus 100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 176 (595)
.+..+++|++|++++ +.++.+| ..+..+++|++|++++ +.+..++.. ....+++|+.|++++.+
T Consensus 107 ~~~~l~~L~~L~Ls~-N~l~~lp--~~~~~l~~L~~L~L~~-N~l~~~~~~---------~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 VFDRLVHLKELFMCC-NKLTELP--RGIERLTHLTHLALDQ-NQLKSIPHG---------AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECCS-SCCCSCC--TTGGGCTTCSEEECCS-SCCCCCCTT---------TTTTCTTCCEEECTTSC
T ss_pred HhCcchhhCeEeccC-CcccccC--cccccCCCCCEEECCC-CcCCccCHH---------HHhCCCCCCEEEeeCCC
Confidence 257899999999999 5788776 5678999999999998 456655421 23357889999998754
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.99 E-value=3.9e-09 Score=99.04 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=108.6
Q ss_pred ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689 2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 81 (595)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 81 (595)
++++++.|.+.--|.. ....+++|+++++.. ..+.+....+.+++|++|+|++| .++.+.+. .+..+++|+
T Consensus 14 ~~l~~s~n~l~~iP~~--~~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-----~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH--IPQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNN-KITDIEEG-----AFEGASGVN 84 (220)
T ss_dssp TEEECCSSCCSSCCSC--CCTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSS-CCCEECTT-----TTTTCTTCC
T ss_pred CEeEeCCCCcccCccC--CCCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCC-cCCEECHH-----HhCCCCCCC
Confidence 3455655543211332 345678999999987 34433322389999999999998 78888554 567899999
Q ss_pred EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689 82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK 161 (595)
Q Consensus 82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 161 (595)
+|+++++ .++.+... .+..+++|++|++++ +.++.+++ ..+..+++|++|++++| .+..++. ...
T Consensus 85 ~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~---------~~~ 149 (220)
T 2v70_A 85 EILLTSN-RLENVQHK--MFKGLESLKTLMLRS-NRITCVGN-DSFIGLSSVRLLSLYDN-QITTVAP---------GAF 149 (220)
T ss_dssp EEECCSS-CCCCCCGG--GGTTCSSCCEEECTT-SCCCCBCT-TSSTTCTTCSEEECTTS-CCCCBCT---------TTT
T ss_pred EEECCCC-ccCccCHh--HhcCCcCCCEEECCC-CcCCeECH-hHcCCCccCCEEECCCC-cCCEECH---------HHh
Confidence 9999996 77766332 367899999999999 47777654 67788999999999994 5555432 133
Q ss_pred ccccccceEecCCCC
Q 036689 162 IEFGQLSTLCLGSLP 176 (595)
Q Consensus 162 ~~~~~L~~L~l~~~~ 176 (595)
..+++|+.|++++.+
T Consensus 150 ~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 150 DTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCTTCCEEECCSCC
T ss_pred cCCCCCCEEEecCcC
Confidence 457889999998754
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.98 E-value=1.9e-09 Score=101.84 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=101.7
Q ss_pred ceecccccccc-cCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689 2 RTLKLKFNSVS-ICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80 (595)
Q Consensus 2 ~~l~l~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 80 (595)
+.|+|+.|.++ +.+..+..+++|++|+|+++.. ..+++.. .+.+++|++|+|++| .++.+++. .+..+++|
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~-----~~~~l~~L 114 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV-FDSLTQLTVLDLGTN-QLTVLPSA-----VFDRLVHL 114 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT-TTTCTTCCEEECCSS-CCCCCCTT-----TTTTCTTC
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhh-cccCCCcCEEECCCC-cCCccChh-----HhCcchhh
Confidence 56788877763 3366777899999999999987 4444332 278999999999999 78876443 45689999
Q ss_pred cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCC
Q 036689 81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN 143 (595)
Q Consensus 81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 143 (595)
++|+++++ ++..+ +..+..+++|++|++++ +.++.+++ ..+..+++|++|++++++.
T Consensus 115 ~~L~Ls~N-~l~~l---p~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 115 KELFMCCN-KLTEL---PRGIERLTHLTHLALDQ-NQLKSIPH-GAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CEEECCSS-CCCSC---CTTGGGCTTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECTTSCB
T ss_pred CeEeccCC-ccccc---CcccccCCCCCEEECCC-CcCCccCH-HHHhCCCCCCEEEeeCCCc
Confidence 99999996 77766 44478899999999999 57887765 6788899999999999653
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=8.6e-09 Score=103.18 Aligned_cols=264 Identities=13% Similarity=0.086 Sum_probs=149.8
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhc--------cCCCcEEEeecccccce
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGS--------FEHLQHLEIRYCKGLQE 293 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~--------l~~L~~L~l~~c~~l~~ 293 (595)
+++|+.|++++|++..... +.. .++.++.+.+... .++. ..+.+ +++|++|.+.. . ++.
T Consensus 48 l~~L~~LdLs~n~i~~~~~---~~~---~~~~~~~~~~~~~----~I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~ 114 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSG---KAG---TYPNGKFYIYMAN----FVPA-YAFSNVVNGVTKGKQTLEKVILSE-K-IKN 114 (329)
T ss_dssp CTTCCEEEEEEEEECCEEE---SSS---SSGGGCCEEECTT----EECT-TTTEEEETTEEEECTTCCC-CBCT-T-CCE
T ss_pred hccCeEEecCcceeEEecC---ccc---ccccccccccccc----ccCH-HHhcccccccccccCCCcEEECCc-c-ccc
Confidence 7889999999997772211 111 2333344444321 2222 34466 88899988887 4 888
Q ss_pred ecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCC---CccccccccccccCCCCCCCCC
Q 036689 294 IISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACD---QVTVFDSELFSFCESSEEDKPD 370 (595)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~---~l~~l~~~~~~~~~~~~~~~~~ 370 (595)
++...+.+ +++|+.+++.+. .+..++...... +.++..+...... ....+..
T Consensus 115 I~~~aF~~--------~~~L~~l~l~~n-~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~--------------- 169 (329)
T 3sb4_A 115 IEDAAFKG--------CDNLKICQIRKK-TAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEH--------------- 169 (329)
T ss_dssp ECTTTTTT--------CTTCCEEEBCCS-SCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTT---------------
T ss_pred hhHHHhhc--------CcccceEEcCCC-CccccchhhhcC-CCceEEecCcchhhhhccccccc---------------
Confidence 87755555 888899988874 344444433211 3333333322100 0011111
Q ss_pred CCCCCCCCCcCccCCCcc-eEeccCCCCee--ccCCCCCcccccCceeEEeeccccccccccCccccccCCCCc-cccCC
Q 036689 371 IPAQQPLFLPEKVFPNLE-ELGLDGKDIRM--IWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSS-VSFRN 446 (595)
Q Consensus 371 ~~~~~~l~~~~~~l~~L~-~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~-~~l~~ 446 (595)
..+..+.+|+ .+.+.....+. ++.. .....+++.+.+.+.- .......+ ..+++
T Consensus 170 --------~~f~~~~~L~~~i~~~~~~~l~~~~~~~---~~~~~~~~~l~~~~~l-----------~~~~~~~l~~~~~~ 227 (329)
T 3sb4_A 170 --------FAFIEGEPLETTIQVGAMGKLEDEIMKA---GLQPRDINFLTIEGKL-----------DNADFKLIRDYMPN 227 (329)
T ss_dssp --------SCEEESCCCEEEEEECTTCCHHHHHHHT---TCCGGGCSEEEEEECC-----------CHHHHHHHHHHCTT
T ss_pred --------cccccccccceeEEecCCCcHHHHHhhc---ccCccccceEEEeeee-----------cHHHHHHHHHhcCC
Confidence 0112344555 44554443332 1110 0122344445443210 00000000 12678
Q ss_pred ccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCcccccccccccccc-ceeccccccccccccCccc
Q 036689 447 LKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLK-MLSLLDLDSLTSFCSGNYI 525 (595)
Q Consensus 447 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~l~~~~~~ 525 (595)
|+.+++.+ ++++.+ +...+.++++|+++++.+. ++.+....+. .+++|+ .+.+.+ +++.+..+++.
T Consensus 228 L~~l~L~~-n~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~-------~~~~L~~~l~l~~--~l~~I~~~aF~ 294 (329)
T 3sb4_A 228 LVSLDISK-TNATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQRVFS-------NCGRLAGTLELPA--SVTAIEFGAFM 294 (329)
T ss_dssp CCEEECTT-BCCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTT-------TCTTCCEEEEECT--TCCEECTTTTT
T ss_pred CeEEECCC-CCccee-cHhhhhCCCCCCEEECCcc--cceehHHHhh-------CChhccEEEEEcc--cceEEchhhhh
Confidence 89999887 457777 4455678889999998774 7777655443 477888 888887 77888777654
Q ss_pred ccCCCccEEEEeCCCCccccCC-CCCCCCCcceEEe
Q 036689 526 FKFPSLEVLFVVGCPKMNIFTT-GELSTPPRVDVMY 560 (595)
Q Consensus 526 ~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~i 560 (595)
.|++|+.|++.+ .+++.++. .+..+++|+.|+.
T Consensus 295 -~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 295 -GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred -CCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 588999999876 47888865 4567899998874
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.86 E-value=5.4e-09 Score=93.55 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=97.3
Q ss_pred ccccccEEEeccCCCC-ccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccc
Q 036689 20 GIKDVEYLCLDKSQDV-KNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDR 98 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 98 (595)
..++|++|+++++... ..++..+ ..+++|++|++++| .++.+ ..+..+++|++|+++++ .+... .+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~Ls~N-~l~~~--~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLINV-GLISV-------SNLPKLPKLKKLELSEN-RIFGG--LD 88 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCC--GGGGGCCEEEEESS-CCCCC-------SSCCCCSSCCEEEEESC-CCCSC--CC
T ss_pred CcccCCEEECCCCCCChhhHHHHH--HhCCCCCEEeCcCC-CCCCh-------hhhccCCCCCEEECcCC-cCchH--HH
Confidence 5688999999998764 2444333 78999999999998 56644 25677899999999996 56653 12
Q ss_pred ccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689 99 LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE 177 (595)
Q Consensus 99 ~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (595)
..+..+++|++|++++| .+++++....+..+++|++|++++|. +..++.. .......+++|+.|+++++..
T Consensus 89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~------~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDY------RESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTH------HHHHHTTCSSCCEETTEETTS
T ss_pred HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHH------HHHHHHhCccCcEecCCCCCh
Confidence 22456899999999995 67776544677889999999999854 4433310 001234578899998887753
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.85 E-value=3.5e-09 Score=92.64 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=96.5
Q ss_pred ccccccEEEeccCCCC-ccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccc
Q 036689 20 GIKDVEYLCLDKSQDV-KNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDR 98 (595)
Q Consensus 20 ~l~~L~~L~L~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 98 (595)
..++++.|+++++... +.++..+ +.+++|++|++++| .++.+ ..+..+++|++|+++++ .+... .+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~Ls~n-~i~~~--~~ 81 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLT--DEFEELEFLSTINV-GLTSI-------ANLPKLNKLKKLELSDN-RVSGG--LE 81 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCC--TTCTTCCEEECTTS-CCCCC-------TTCCCCTTCCEEECCSS-CCCSC--TH
T ss_pred CCccCeEEEccCCcCChhHHHHHH--hhcCCCcEEECcCC-CCCCc-------hhhhcCCCCCEEECCCC-cccch--HH
Confidence 5689999999999874 3454433 78999999999998 67654 25678999999999996 66652 12
Q ss_pred ccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecC
Q 036689 99 LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLG 173 (595)
Q Consensus 99 ~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 173 (595)
..+..+++|++|++++| .+++++....+..+++|++|++++| .+..++.. .......+++|+.|+++
T Consensus 82 ~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~------~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDY------RENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTH------HHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHH------HHHHHHHCCCcccccCC
Confidence 23556999999999995 6777654467889999999999996 44443310 00123457888888765
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.85 E-value=4.3e-09 Score=94.18 Aligned_cols=128 Identities=24% Similarity=0.272 Sum_probs=82.5
Q ss_pred ceecccccccc--cCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC
Q 036689 2 RTLKLKFNSVS--ICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI 79 (595)
Q Consensus 2 ~~l~l~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 79 (595)
+.|+|..|.+. --+..+..+++|++|++.+|.. ..+ ..+ +.+++|++|++++| .++...+. .+..+++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~-~~~--~~l~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~ 96 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-SNL--PKLPKLKKLELSEN-RIFGGLDM-----LAEKLPN 96 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC-SSC--CCCSSCCEEEEESC-CCCSCCCH-----HHHHCTT
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh-hhh--ccCCCCCEEECcCC-cCchHHHH-----HHhhCCC
Confidence 45666666554 2244455778888888888775 333 333 67888888888887 45542121 2345788
Q ss_pred ccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccc--hhhhhcCCCCcEEEEcccC
Q 036689 80 LESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL--LSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 80 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~ 142 (595)
|++|+++++ .++.+.. ...+..+++|++|++++| .++..++ ...+..+++|++|++++|.
T Consensus 97 L~~L~Ls~N-~l~~~~~-~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGN-KLKDIST-LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSS-SCCSSGG-GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCC-ccCcchh-HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 888888886 6665421 123667888888888885 5665542 1366778888888888754
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.80 E-value=5.4e-07 Score=92.46 Aligned_cols=102 Identities=11% Similarity=0.047 Sum_probs=57.1
Q ss_pred CccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccccc
Q 036689 440 SSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSF 519 (595)
Q Consensus 440 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 519 (595)
.+..+.+|+.+.+.+ .++.+ ....+.++++|+.+.+.+ .++.+....+. .+.+|+.+.+.. +++.+
T Consensus 292 ~F~~~~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-------~c~~L~~i~lp~--~l~~I 357 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD--SVKFI-GEEAFESCTSLVSIDLPY--LVEEIGKRSFR-------GCTSLSNINFPL--SLRKI 357 (394)
T ss_dssp TTTTCTTCCEEEECT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTTT-------TCTTCCEECCCT--TCCEE
T ss_pred ccccccccccccccc--cccee-chhhhcCCCCCCEEEeCC--cccEEhHHhcc-------CCCCCCEEEECc--cccEe
Confidence 444566777776653 35544 233446667777777643 25555433332 356677776654 36666
Q ss_pred ccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceE
Q 036689 520 CSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDV 558 (595)
Q Consensus 520 ~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l 558 (595)
...++. .|++|+.+.+.. .+..+.....++++|+.|
T Consensus 358 ~~~aF~-~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQ-GCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBT-TCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred hHHHhh-CCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 655543 467777777753 344444445556666665
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=7.9e-07 Score=91.12 Aligned_cols=261 Identities=9% Similarity=0.079 Sum_probs=173.3
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD 301 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 301 (595)
+..++.+.+.+ +++.+....+ .. .+|+.+.+.. +++.+.... +.++ +|+.+.+.. .++.+....+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF-----~~-~~L~~i~l~~--~i~~I~~~a-F~~~-~L~~i~lp~--~l~~I~~~aF~~ 178 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAF-----RN-SQIAKVVLNE--GLKSIGDMA-FFNS-TVQEIVFPS--TLEQLKEDIFYY 178 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTT-----TT-CCCSEEECCT--TCCEECTTT-TTTC-CCCEEECCT--TCCEECSSTTTT
T ss_pred cCCccEEEECC-ccCEehHhhc-----cc-CCccEEEeCC--CccEECHHh-cCCC-CceEEEeCC--CccEehHHHhhC
Confidence 35566666654 3555532222 33 3688888864 476665443 3443 689888875 478887655554
Q ss_pred CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689 302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE 381 (595)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 381 (595)
+++|+.+++.+ ..+..++.+... +.+|+.+.+.+ .++.++. ..+
T Consensus 179 --------c~~L~~l~l~~-n~l~~I~~~aF~--~~~L~~l~lp~--~l~~I~~-----------------------~aF 222 (401)
T 4fdw_A 179 --------CYNLKKADLSK-TKITKLPASTFV--YAGIEEVLLPV--TLKEIGS-----------------------QAF 222 (401)
T ss_dssp --------CTTCCEEECTT-SCCSEECTTTTT--TCCCSEEECCT--TCCEECT-----------------------TTT
T ss_pred --------cccCCeeecCC-CcceEechhhEe--ecccCEEEeCC--chheehh-----------------------hHh
Confidence 88899999986 346666555433 67888888863 3666665 345
Q ss_pred ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCc--
Q 036689 382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLT-- 459 (595)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~-- 459 (595)
..+++|+.+.+..+ ...+....+.. .+|+.+.+. +++..+....+..+++|+.+.+.+. .+.
T Consensus 223 ~~~~~L~~l~l~~~-l~~I~~~aF~~---~~L~~i~lp-----------~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~ 286 (401)
T 4fdw_A 223 LKTSQLKTIEIPEN-VSTIGQEAFRE---SGITTVKLP-----------NGVTNIASRAFYYCPELAEVTTYGS-TFNDD 286 (401)
T ss_dssp TTCTTCCCEECCTT-CCEECTTTTTT---CCCSEEEEE-----------TTCCEECTTTTTTCTTCCEEEEESS-CCCCC
T ss_pred hCCCCCCEEecCCC-ccCcccccccc---CCccEEEeC-----------CCccEEChhHhhCCCCCCEEEeCCc-cccCC
Confidence 67889999998764 12233332322 578888873 3456677778888999999999873 222
Q ss_pred ---ccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEE
Q 036689 460 ---NLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFV 536 (595)
Q Consensus 460 ---~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l 536 (595)
.+ ....+.++++|+.+.+.+ .++.+....+. .+++|+.+.+.. +++.+..+++. .| +|+.+.+
T Consensus 287 ~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-------~c~~L~~l~lp~--~l~~I~~~aF~-~~-~L~~l~l 352 (401)
T 4fdw_A 287 PEAMI-HPYCLEGCPKLARFEIPE--SIRILGQGLLG-------GNRKVTQLTIPA--NVTQINFSAFN-NT-GIKEVKV 352 (401)
T ss_dssp TTCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTTT-------TCCSCCEEEECT--TCCEECTTSSS-SS-CCCEEEE
T ss_pred cccEE-CHHHhhCCccCCeEEeCC--ceEEEhhhhhc-------CCCCccEEEECc--cccEEcHHhCC-CC-CCCEEEE
Confidence 34 345668899999999974 37777655443 478899999965 58888877765 46 9999999
Q ss_pred eCCCCccccCCC-CCCC-CCcceEEecc
Q 036689 537 VGCPKMNIFTTG-ELST-PPRVDVMYRN 562 (595)
Q Consensus 537 ~~C~~l~~lp~~-~~~~-~~L~~l~i~~ 562 (595)
.+. .+..++.+ ...+ ..++.|++-.
T Consensus 353 ~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 353 EGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred cCC-CCcccccccccCCCCCccEEEeCH
Confidence 885 45555433 3345 4788888863
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.79 E-value=2.5e-08 Score=91.36 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=61.6
Q ss_pred ccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccc
Q 036689 22 KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSV 101 (595)
Q Consensus 22 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 101 (595)
.++++|+++++.. ..+++....+.+++|++|+|++| .++.+.+. .+..+++|++|+++++ .++.+... .+
T Consensus 29 ~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~~~~~--~~ 98 (192)
T 1w8a_A 29 LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-----AFEGASHIQELQLGEN-KIKEISNK--MF 98 (192)
T ss_dssp TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-----TTTTCTTCCEEECCSC-CCCEECSS--SS
T ss_pred CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCC-CCCCcCHh-----HcCCcccCCEEECCCC-cCCccCHH--Hh
Confidence 3666777766654 33333211256667777777666 55554333 3455666777777664 55554222 24
Q ss_pred cCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689 102 QSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 102 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 142 (595)
..+++|++|++++ +.++..++ ..+..+++|++|++++++
T Consensus 99 ~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 99 LGLHQLKTLNLYD-NQISCVMP-GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCTTCCEEECCS-SCCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred cCCCCCCEEECCC-CcCCeeCH-HHhhcCCCCCEEEeCCCC
Confidence 5566677777766 35555433 455566666666666643
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.79 E-value=2.9e-08 Score=90.99 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=70.7
Q ss_pred cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
.+++++|+++++.. ..++..+ ..+++|++|+|++| .++.+.+. .+..+++|++|+++++ .++.+... .
T Consensus 30 ~~~l~~L~L~~n~i-~~ip~~~--~~l~~L~~L~Ls~N-~i~~i~~~-----~f~~l~~L~~L~Ls~N-~l~~i~~~--~ 97 (193)
T 2wfh_A 30 PRDVTELYLDGNQF-TLVPKEL--SNYKHLTLIDLSNN-RISTLSNQ-----SFSNMTQLLTLILSYN-RLRCIPPR--T 97 (193)
T ss_dssp CTTCCEEECCSSCC-CSCCGGG--GGCTTCCEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCBCCTT--T
T ss_pred CCCCCEEECCCCcC-chhHHHh--hcccCCCEEECCCC-cCCEeCHh-----HccCCCCCCEEECCCC-ccCEeCHH--H
Confidence 45777788777766 3444333 67777888888777 56655333 4566777788887774 56655322 3
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 142 (595)
+..+++|++|++++ +.++.+++ ..+..+++|++|++++++
T Consensus 98 f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 FDGLKSLRLLSLHG-NDISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCS-SCCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred hCCCCCCCEEECCC-CCCCeeCh-hhhhcCccccEEEeCCCC
Confidence 56677778888877 46665543 456677777777777643
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.77 E-value=7.3e-09 Score=90.61 Aligned_cols=125 Identities=19% Similarity=0.261 Sum_probs=93.1
Q ss_pred ceecccccccc--cCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC
Q 036689 2 RTLKLKFNSVS--ICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI 79 (595)
Q Consensus 2 ~~l~l~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 79 (595)
+.|++..|.++ ..+..++.+++|++|++++|... .+ ..+ +.+++|++|++++| .++...+. .+..+++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~--~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~ 89 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANL--PKLNKLKKLELSDN-RVSGGLEV-----LAEKCPN 89 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTC--CCCTTCCEEECCSS-CCCSCTHH-----HHHHCTT
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhh--hcCCCCCEEECCCC-cccchHHH-----HhhhCCC
Confidence 56778777765 23555668899999999999764 33 344 78999999999999 56642122 3446899
Q ss_pred ccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccc--hhhhhcCCCCcEEEEc
Q 036689 80 LESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL--LSAAKCLPRLERIAVI 139 (595)
Q Consensus 80 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~l~~L~~L~l~ 139 (595)
|++|+++++ .++.+.. +..+..+++|++|++++| .+++.++ ...+..+++|++|+++
T Consensus 90 L~~L~ls~N-~i~~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLST-IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTS-CCCSHHH-HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCC-cCCChHH-HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 999999996 6766421 134788999999999996 6777653 1468889999999875
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.76 E-value=3.5e-10 Score=121.57 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=56.1
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceec-cccc
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEII-SKEG 299 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~ 299 (595)
.+++|+.|++++|.++.+ |..+ ..+++|+.|+++++ .++.++ .++++++|++|++++|. ++.+. +...
T Consensus 461 ~l~~L~~L~Ls~N~l~~l-----p~~~-~~l~~L~~L~Ls~N-~l~~lp---~l~~l~~L~~L~Ls~N~-l~~~~~p~~l 529 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLRAL-----PPAL-AALRCLEVLQASDN-ALENVD---GVANLPRLQELLLCNNR-LQQSAAIQPL 529 (567)
T ss_dssp GGTTCCEEECCSSCCCCC-----CGGG-GGCTTCCEEECCSS-CCCCCG---GGTTCSSCCEEECCSSC-CCSSSTTGGG
T ss_pred ccccCcEeecCccccccc-----chhh-hcCCCCCEEECCCC-CCCCCc---ccCCCCCCcEEECCCCC-CCCCCCcHHH
Confidence 356667777776666544 5544 56667777777654 455542 24666677777776665 65553 2222
Q ss_pred CCCCCCCCcCCCcccEEeecCCCCcccccCCC--ccccCcccceee
Q 036689 300 ADDQVPPNFVFPQVTILRLVGLPELKCLYPGM--HTSEWPALKLLD 343 (595)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~--~~~~~~~L~~L~ 343 (595)
.. +++|+.|++++++ +...+... ....+|+|+.|+
T Consensus 530 ~~--------l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 530 VS--------CPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GG--------CTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred hc--------CCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 22 6667777776643 44333221 111245555553
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.76 E-value=8.2e-11 Score=126.44 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=21.2
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR 260 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~ 260 (595)
..++|+.|++++|.++.+ |..+ +.+++|+.|+++
T Consensus 347 ~~~~L~~L~Ls~n~L~~L-----p~~i-~~l~~L~~L~l~ 380 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVL-----QSEL-ESCKELQELEPE 380 (567)
T ss_dssp TTTTSSSCCCCHHHHHHH-----HHHH-HHHHHHHHHCTT
T ss_pred cCccceeccCChhhHHhh-----HHHH-HHHHHHHHhccc
Confidence 356666777777666555 5555 556666666654
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=2.3e-06 Score=87.64 Aligned_cols=225 Identities=13% Similarity=0.112 Sum_probs=126.4
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
..+..++.+.+.+ .++.|... .+.. .+|+.+.+.+ +++.+.... +..+ +|+.+.+.+ .++.+..
T Consensus 110 ~~~~~l~~i~ip~--~i~~I~~~-----aF~~-~~L~~i~l~~--~i~~I~~~a--F~~~-~L~~i~lp~--~l~~I~~- 173 (401)
T 4fdw_A 110 EILKGYNEIILPN--SVKSIPKD-----AFRN-SQIAKVVLNE--GLKSIGDMA--FFNS-TVQEIVFPS--TLEQLKE- 173 (401)
T ss_dssp EECSSCSEEECCT--TCCEECTT-----TTTT-CCCSEEECCT--TCCEECTTT--TTTC-CCCEEECCT--TCCEECS-
T ss_pred EecCCccEEEECC--ccCEehHh-----hccc-CCccEEEeCC--CccEECHHh--cCCC-CceEEEeCC--CccEehH-
Confidence 3456777777765 47777443 3333 3688888875 366653332 3343 688888875 5665544
Q ss_pred hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccc
Q 036689 125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISS 204 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (595)
..+.+|++|+.+++.+ +.+..++. ..+.+.+|+.+.+.+ .++.+..
T Consensus 174 ~aF~~c~~L~~l~l~~-n~l~~I~~----------~aF~~~~L~~l~lp~--~l~~I~~--------------------- 219 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSK-TKITKLPA----------STFVYAGIEEVLLPV--TLKEIGS--------------------- 219 (401)
T ss_dssp STTTTCTTCCEEECTT-SCCSEECT----------TTTTTCCCSEEECCT--TCCEECT---------------------
T ss_pred HHhhCcccCCeeecCC-CcceEech----------hhEeecccCEEEeCC--chheehh---------------------
Confidence 6677888888888876 45555542 233345666666542 2322221
Q ss_pred ccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEE
Q 036689 205 LEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLE 284 (595)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~ 284 (595)
..| ..+++|+.+.+..+ ++.+....+ .. .+|+.+.+. .+++.+.. ..+.+|++|+.+.
T Consensus 220 ---------~aF---~~~~~L~~l~l~~~-l~~I~~~aF-----~~-~~L~~i~lp--~~i~~I~~-~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 220 ---------QAF---LKTSQLKTIEIPEN-VSTIGQEAF-----RE-SGITTVKLP--NGVTNIAS-RAFYYCPELAEVT 277 (401)
T ss_dssp ---------TTT---TTCTTCCCEECCTT-CCEECTTTT-----TT-CCCSEEEEE--TTCCEECT-TTTTTCTTCCEEE
T ss_pred ---------hHh---hCCCCCCEEecCCC-ccCcccccc-----cc-CCccEEEeC--CCccEECh-hHhhCCCCCCEEE
Confidence 012 24667777777653 455532222 23 567777775 34555433 3457777888887
Q ss_pred eecccccc-----eecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCcccccc
Q 036689 285 IRYCKGLQ-----EIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS 355 (595)
Q Consensus 285 l~~c~~l~-----~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 355 (595)
+.++. +. .++...+.+ +++|+.+.+.+ .+..+...... .|++|+.+.+.+. ++.+..
T Consensus 278 l~~~~-~~~~~~~~I~~~aF~~--------c~~L~~l~l~~--~i~~I~~~aF~-~c~~L~~l~lp~~--l~~I~~ 339 (401)
T 4fdw_A 278 TYGST-FNDDPEAMIHPYCLEG--------CPKLARFEIPE--SIRILGQGLLG-GNRKVTQLTIPAN--VTQINF 339 (401)
T ss_dssp EESSC-CCCCTTCEECTTTTTT--------CTTCCEECCCT--TCCEECTTTTT-TCCSCCEEEECTT--CCEECT
T ss_pred eCCcc-ccCCcccEECHHHhhC--------CccCCeEEeCC--ceEEEhhhhhc-CCCCccEEEECcc--ccEEcH
Confidence 76654 22 344433333 67777777763 24444433221 2566777766432 444444
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.74 E-value=2.3e-08 Score=90.21 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=16.3
Q ss_pred cCCCccEEEEecCCCCccccchhhhhccCCCcEEEeeccc
Q 036689 250 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCK 289 (595)
Q Consensus 250 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 289 (595)
.+++|+.|+++++ .++.++....+..+++|++|++++|.
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence 3444444444443 23333221223444444444444444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=8.2e-08 Score=86.57 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=56.5
Q ss_pred cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689 21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS 100 (595)
Q Consensus 21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 100 (595)
.++|++|+++++... .+++.. .+.+++|++|++++| .++.+++. .+..+++|++|+++++ .++.+... .
T Consensus 27 ~~~l~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~l~~N-~l~~~~~~--~ 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQ-SLPHGV-FDKLTQLTKLSLSQN-QIQSLPDG-----VFDKLTKLTILYLHEN-KLQSLPNG--V 95 (177)
T ss_dssp CTTCSEEECCSSCCC-CCCTTT-TTTCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT--T
T ss_pred CCCCcEEEeCCCccc-EeCHHH-hcCcccccEEECCCC-cceEeChh-----HccCCCccCEEECCCC-CccccCHH--H
Confidence 356666666665542 222211 145666666666665 45544322 2345566666666664 44443211 1
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 142 (595)
+..+++|++|+++++ .++.+++ ..+..+++|++|++++++
T Consensus 96 ~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 FDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred hhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCC
Confidence 345566666666663 4554443 344556666666666543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.67 E-value=4.5e-08 Score=88.23 Aligned_cols=137 Identities=14% Similarity=0.054 Sum_probs=98.9
Q ss_pred cccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccc
Q 036689 19 QGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDR 98 (595)
Q Consensus 19 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 98 (595)
..+.+|++|+++++... .+ +.+ ....++|++|++++| .++.+ + .+..+++|++|+++++ .++.+...
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i-~~~-~~~~~~L~~L~Ls~N-~l~~~-~------~l~~l~~L~~L~Ls~N-~l~~~~~~- 82 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VI-ENL-GATLDQFDAIDFSDN-EIRKL-D------GFPLLRRLKTLLVNNN-RICRIGEG- 82 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SC-CCG-GGGTTCCSEEECCSS-CCCEE-C------CCCCCSSCCEEECCSS-CCCEECSC-
T ss_pred CCcCCceEEEeeCCCCc-hh-HHh-hhcCCCCCEEECCCC-CCCcc-c------ccccCCCCCEEECCCC-cccccCcc-
Confidence 36789999999999764 44 333 133449999999999 78776 1 4677899999999996 77766322
Q ss_pred ccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689 99 LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE 177 (595)
Q Consensus 99 ~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (595)
.+..+++|++|++++| .++.++....+..+++|++|++++|+ +..++.. .......+++|+.|++++++.
T Consensus 83 -~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~------~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 -LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHY------RLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp -HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTH------HHHHHHHCTTCSEETTEECCH
T ss_pred -hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhH------HHHHHHHCCccceeCCCcCCH
Confidence 1378999999999995 67777643478899999999999964 4333310 000244689999999887764
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.64 E-value=1.9e-07 Score=85.44 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=93.3
Q ss_pred ceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689 226 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP 305 (595)
Q Consensus 226 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 305 (595)
+.+++++++++.+ |..+ .++|+.|+++++ .++.+++...++.+++|++|+++++. ++.+.+..+.+
T Consensus 11 ~~l~~s~~~l~~i-----p~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~---- 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-----PRDI---PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG---- 76 (192)
T ss_dssp TEEECTTSCCSSC-----CSCC---CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT----
T ss_pred CEEEcCCCCcCcC-----ccCC---CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC----
Confidence 6788888877766 7654 458999999975 67766554346889999999999987 88775533333
Q ss_pred CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689 306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP 385 (595)
Q Consensus 306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 385 (595)
+++|++|+++++ .+..++... ...+++|+.|+++++. ++.+++ ..+..++
T Consensus 77 ----l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~-----------------------~~~~~l~ 126 (192)
T 1w8a_A 77 ----ASHIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDNQ-ISCVMP-----------------------GSFEHLN 126 (192)
T ss_dssp ----CTTCCEEECCSC-CCCEECSSS-STTCTTCCEEECCSSC-CCEECT-----------------------TSSTTCT
T ss_pred ----cccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCCc-CCeeCH-----------------------HHhhcCC
Confidence 889999999995 466555432 1237899999998875 443433 2246789
Q ss_pred CcceEeccCCCCe
Q 036689 386 NLEELGLDGKDIR 398 (595)
Q Consensus 386 ~L~~L~l~~~~~~ 398 (595)
+|++|++++|+..
T Consensus 127 ~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 127 SLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEeCCCCcc
Confidence 9999999998754
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.61 E-value=3e-07 Score=84.08 Aligned_cols=127 Identities=17% Similarity=0.310 Sum_probs=92.9
Q ss_pred ceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689 226 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP 305 (595)
Q Consensus 226 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 305 (595)
+.++++++.++.+ |..+ .++|+.|+++++ .++.++ ..+..+++|++|+++++. ++.++...+.+
T Consensus 13 ~~l~~~~~~l~~i-----p~~~---~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~---- 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-----PKGI---PRDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR-ISTLSNQSFSN---- 76 (193)
T ss_dssp TEEECTTSCCSSC-----CSCC---CTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC-CCCCCTTTTTT----
T ss_pred CEEEcCCCCCCcC-----CCCC---CCCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc-CCEeCHhHccC----
Confidence 4677777777766 7654 578999999975 566654 356889999999999988 88776644433
Q ss_pred CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689 306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP 385 (595)
Q Consensus 306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 385 (595)
+++|++|+++++ .+..++... ...+++|+.|+++++. ++.++. ..+..++
T Consensus 77 ----l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~L~~N~-l~~~~~-----------------------~~~~~l~ 126 (193)
T 2wfh_A 77 ----MTQLLTLILSYN-RLRCIPPRT-FDGLKSLRLLSLHGND-ISVVPE-----------------------GAFNDLS 126 (193)
T ss_dssp ----CTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSSC-CCBCCT-----------------------TTTTTCT
T ss_pred ----CCCCCEEECCCC-ccCEeCHHH-hCCCCCCCEEECCCCC-CCeeCh-----------------------hhhhcCc
Confidence 889999999995 466655432 2237899999998864 555665 3356789
Q ss_pred CcceEeccCCCCe
Q 036689 386 NLEELGLDGKDIR 398 (595)
Q Consensus 386 ~L~~L~l~~~~~~ 398 (595)
+|++|++++|+..
T Consensus 127 ~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 127 ALSHLAIGANPLY 139 (193)
T ss_dssp TCCEEECCSSCEE
T ss_pred cccEEEeCCCCee
Confidence 9999999998754
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=1.1e-05 Score=82.75 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=16.4
Q ss_pred CccccCCccEEeEeCCCCCcccccchHHhhcccccEEEE
Q 036689 440 SSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQV 478 (595)
Q Consensus 440 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 478 (595)
.+..+++|+.+.+.. .++.+ ....+.++++|+.+.+
T Consensus 338 aF~~c~~L~~i~lp~--~l~~I-~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 338 SFRGCTSLSNINFPL--SLRKI-GANAFQGCINLKKVEL 373 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEE-CTTTBTTCTTCCEEEE
T ss_pred hccCCCCCCEEEECc--cccEe-hHHHhhCCCCCCEEEE
Confidence 444455555555542 23433 2233345555555555
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.56 E-value=4.1e-07 Score=81.86 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=89.8
Q ss_pred cceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCC
Q 036689 225 LEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQV 304 (595)
Q Consensus 225 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 304 (595)
.+.+++++++++.+ |..+ .++|+.|+++++ .++.+++ ..++.+++|++|+++++. ++.++...+..
T Consensus 9 ~~~l~~~~~~l~~~-----p~~~---~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-----PTGI---PSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK--- 74 (177)
T ss_dssp TTEEECCSSCCSSC-----CTTC---CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCTTTTTT---
T ss_pred CCEEEecCCCCccC-----CCCC---CCCCcEEEeCCC-cccEeCH-HHhcCcccccEEECCCCc-ceEeChhHccC---
Confidence 45677777766665 6543 578999999875 5666543 345788899999999887 77776533222
Q ss_pred CCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccC
Q 036689 305 PPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVF 384 (595)
Q Consensus 305 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 384 (595)
+++|+.|+++++ .+..++... ...+++|+.|+++++ .++.+|. ..+..+
T Consensus 75 -----l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~-----------------------~~~~~l 123 (177)
T 2o6r_A 75 -----LTKLTILYLHEN-KLQSLPNGV-FDKLTQLKELALDTN-QLKSVPD-----------------------GIFDRL 123 (177)
T ss_dssp -----CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCT-----------------------TTTTTC
T ss_pred -----CCccCEEECCCC-CccccCHHH-hhCCcccCEEECcCC-cceEeCH-----------------------HHhcCC
Confidence 888999999885 455554432 123788999999887 4556665 334678
Q ss_pred CCcceEeccCCCCe
Q 036689 385 PNLEELGLDGKDIR 398 (595)
Q Consensus 385 ~~L~~L~l~~~~~~ 398 (595)
++|++|++++|+..
T Consensus 124 ~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 124 TSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCCEEECCSSCBC
T ss_pred cccCEEEecCCCee
Confidence 89999999998744
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.40 E-value=9.7e-07 Score=78.86 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=73.0
Q ss_pred ccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccC
Q 036689 24 VEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQS 103 (595)
Q Consensus 24 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 103 (595)
.+.++++++.. +.++..+ .++|++|+|++| .++.+.+. .+..+++|++|+++++ +++.+... .+..
T Consensus 11 ~~~l~~s~n~l-~~ip~~~----~~~l~~L~L~~N-~i~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~--~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSL-ASVPTGI----PTTTQVLYLYDN-QITKLEPG-----VFDRLTQLTRLDLDNN-QLTVLPAG--VFDK 76 (170)
T ss_dssp TTEEECTTSCC-SSCCSCC----CTTCSEEECCSS-CCCCCCTT-----TTTTCTTCSEEECCSS-CCCCCCTT--TTTT
T ss_pred CCEEEeCCCCc-CccCccC----CCCCcEEEcCCC-cCCccChh-----hhcCcccCCEEECCCC-CcCccChh--hccC
Confidence 46778877665 4444333 478888888888 67766443 4567888888888885 67766332 2467
Q ss_pred CCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689 104 FNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 104 l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 142 (595)
+++|++|++++ +.++.+++ ..+..+++|++|++++++
T Consensus 77 l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 77 LTQLTQLSLND-NQLKSIPR-GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCC-CccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence 88888888888 47777654 567788888888888854
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.39 E-value=6.4e-09 Score=95.83 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=82.2
Q ss_pred cccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccc
Q 036689 17 KLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ 96 (595)
Q Consensus 17 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 96 (595)
.++.+++|++|+++++.. ..++ .+ +.+++|++|++++| .++.++ . ....+++|++|+++++ .++.+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~~l~-~~--~~l~~L~~L~l~~n-~l~~l~-~-----~~~~~~~L~~L~L~~N-~l~~l~- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-EKIS-SL--SGMENLRILSLGRN-LIKKIE-N-----LDAVADTLEELWISYN-QIASLS- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-SCCC-CH--HHHTTCCEEEEEEE-EECSCS-S-----HHHHHHHCSEEEEEEE-ECCCHH-
T ss_pred HHhcCCCCCEEECCCCCC-cccc-cc--ccCCCCCEEECCCC-Cccccc-c-----hhhcCCcCCEEECcCC-cCCcCC-
Confidence 666788999999988866 3343 33 78999999999988 566442 1 3445688999999986 666652
Q ss_pred ccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCC
Q 036689 97 DRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN 143 (595)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 143 (595)
.+..+++|++|++++| .++.++....+..+++|++|++++|..
T Consensus 110 ---~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 ---GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ---HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ---ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 3677889999999984 677665435678899999999998643
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.39 E-value=1.1e-06 Score=78.78 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=71.7
Q ss_pred cEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCC
Q 036689 25 EYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSF 104 (595)
Q Consensus 25 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l 104 (595)
+.++++++.. +.++..+ .++|++|+|++| .++.+.+. .+..+++|++|+++++ +++.+... .+..+
T Consensus 15 ~~l~~~~n~l-~~iP~~~----~~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~i~~~--~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGI----PTDKQRLWLNNN-QITKLEPG-----VFDHLVNLQQLYFNSN-KLTAIPTG--VFDKL 80 (174)
T ss_dssp SEEECCSSCC-SSCCSCC----CTTCSEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT--TTTTC
T ss_pred cEEEeCCCCC-CccCCCc----CCCCcEEEeCCC-CccccCHH-----HhcCCcCCCEEECCCC-CCCccChh--HhCCc
Confidence 5677777655 4554433 378888888888 67766443 4567888888888885 77766332 14678
Q ss_pred CCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689 105 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 105 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 142 (595)
++|++|++++ +.++.+++ ..+..+++|++|++++++
T Consensus 81 ~~L~~L~L~~-N~l~~l~~-~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLND-NHLKSIPR-GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCS-SCCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred chhhEEECCC-CccceeCH-HHhccccCCCEEEeCCCC
Confidence 8888888888 46776654 457788888888888854
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.37 E-value=2.7e-07 Score=102.19 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=71.2
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL 124 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~ 124 (595)
..+++|++|+|++| .+..++. ....+++|++|+|+++ .++.+ +..++.+++|++|+|++| .++.+|
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~------~~~~l~~L~~L~Ls~N-~l~~l---p~~~~~l~~L~~L~Ls~N-~l~~lp-- 286 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISA------NIFKYDFLTRLYLNGN-SLTEL---PAEIKNLSNLRVLDLSHN-RLTSLP-- 286 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCG------GGGGCCSCSCCBCTTS-CCSCC---CGGGGGGTTCCEEECTTS-CCSSCC--
T ss_pred ccCCCCcEEECCCC-CCCCCCh------hhcCCCCCCEEEeeCC-cCccc---ChhhhCCCCCCEEeCcCC-cCCccC--
Confidence 66777888888777 4554422 2336777888888875 56654 334677788888888874 566554
Q ss_pred hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCc
Q 036689 125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPEL 178 (595)
Q Consensus 125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 178 (595)
..+.++++|++|++++| .+..+|. .+..+++|+.|+++++.--
T Consensus 287 ~~~~~l~~L~~L~L~~N-~l~~lp~----------~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDN-MVTTLPW----------EFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSGGGGTTCSEEECCSS-CCCCCCS----------STTSCTTCCCEECTTSCCC
T ss_pred hhhcCCCCCCEEECCCC-CCCccCh----------hhhcCCCccEEeCCCCccC
Confidence 45677788888888774 4555552 2445677888887776543
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.31 E-value=6.4e-07 Score=99.25 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=85.3
Q ss_pred cCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccc
Q 036689 436 LLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDS 515 (595)
Q Consensus 436 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 515 (595)
.++..+..+++|+.|+++++ .+..++ .. +..+++|++|+|++|. ++.++..... +++|+.|+++++ .
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~-~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~--------l~~L~~L~Ls~N-~ 281 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNIS-AN-IFKYDFLTRLYLNGNS-LTELPAEIKN--------LSNLRVLDLSHN-R 281 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCC-GG-GGGCCSCSCCBCTTSC-CSCCCGGGGG--------GTTCCEEECTTS-C
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCC-hh-hcCCCCCCEEEeeCCc-CcccChhhhC--------CCCCCEEeCcCC-c
Confidence 34446777889999999984 566663 23 3478999999999886 7777654443 889999999995 5
Q ss_pred ccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCC
Q 036689 516 LTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGA 565 (595)
Q Consensus 516 l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~ 565 (595)
++.+|... ..+++|++|++++| .++.+|..+..+++|++|++++|.-
T Consensus 282 l~~lp~~~--~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 282 LTSLPAEL--GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSSCCSSG--GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCccChhh--cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 77888765 34899999999987 6888998888899999999987654
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.28 E-value=1.9e-08 Score=92.68 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=17.8
Q ss_pred ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689 101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN 140 (595)
Q Consensus 101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 140 (595)
+..+++|++|++++| .++.++ ..+..+++|++|++++
T Consensus 66 ~~~l~~L~~L~l~~n-~l~~l~--~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 66 LSGMENLRILSLGRN-LIKKIE--NLDAVADTLEELWISY 102 (198)
T ss_dssp HHHHTTCCEEEEEEE-EECSCS--SHHHHHHHCSEEEEEE
T ss_pred cccCCCCCEEECCCC-Cccccc--chhhcCCcCCEEECcC
Confidence 344555555555553 344333 3333445555555555
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=9.3e-07 Score=78.30 Aligned_cols=94 Identities=12% Similarity=0.179 Sum_probs=60.4
Q ss_pred CCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcc
Q 036689 445 RNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNY 524 (595)
Q Consensus 445 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 524 (595)
..|+.|++++|. +++... ..+.++++|++|++++|..+++-....-.. ..-..++|++|++++|+++++--....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~---~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQ---LENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHT---CHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHh---cccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 468888888876 666422 334678888888888887665543221110 000124688888888888875433322
Q ss_pred cccCCCccEEEEeCCCCccc
Q 036689 525 IFKFPSLEVLFVVGCPKMNI 544 (595)
Q Consensus 525 ~~~~~~L~~L~l~~C~~l~~ 544 (595)
..+++|++|++++|++++.
T Consensus 136 -~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 -HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -GGCTTCCEEEEESCTTCCC
T ss_pred -hcCCCCCEEECCCCCCCCc
Confidence 2488899999999988875
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=4.8e-07 Score=80.13 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=17.0
Q ss_pred cceeecccccceeecccCCCccccccCCCccEEEEecCCCCcc
Q 036689 225 LEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKY 267 (595)
Q Consensus 225 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 267 (595)
|+.|++++|.+++.+...+ ..+++|++|+|++|..+++
T Consensus 63 L~~LDLs~~~Itd~GL~~L-----~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHM-----EGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp EEEEEEESCCCCGGGGGGG-----TTCSCCCEEEEESCTTCCH
T ss_pred EeEEeCcCCCccHHHHHHh-----cCCCCCCEEEeCCCCccCH
Confidence 5555555554443322211 2345555555555554444
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.21 E-value=3.8e-06 Score=74.91 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=76.5
Q ss_pred ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689 2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 81 (595)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 81 (595)
+.+++..|.+.--+.++ .+++++|+|+++......+..+ +++++|++|+|++| .++.+++. .+..+++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~-----~f~~l~~L~ 81 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVF--DRLTQLTRLDLDNN-QLTVLPAG-----VFDKLTQLT 81 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhh--cCcccCCEEECCCC-CcCccChh-----hccCCCCCC
Confidence 35666666532224333 5899999999998743333334 78999999999999 78877544 467899999
Q ss_pred EEeccCccCccccccccccccCCCCccEEEecCCCCccc
Q 036689 82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN 120 (595)
Q Consensus 82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 120 (595)
+|+++++ +++.+... .+..+++|++|+++++ .++.
T Consensus 82 ~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~N-~~~c 116 (170)
T 3g39_A 82 QLSLNDN-QLKSIPRG--AFDNLKSLTHIWLLNN-PWDC 116 (170)
T ss_dssp EEECCSS-CCCCCCTT--TTTTCTTCCEEECCSS-CBCT
T ss_pred EEECCCC-ccCEeCHH--HhcCCCCCCEEEeCCC-CCCC
Confidence 9999996 78776432 3678999999999994 4543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.21 E-value=4e-06 Score=75.07 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=76.0
Q ss_pred eecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccE
Q 036689 3 TLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILES 82 (595)
Q Consensus 3 ~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~ 82 (595)
.+++..+.+.--|.++ .++|++|+++++......+..+ +.+++|++|+|++| .++.+++. .+..+++|++
T Consensus 16 ~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~i~~~-----~~~~l~~L~~ 85 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVF--DHLVNLQQLYFNSN-KLTAIPTG-----VFDKLTQLTQ 85 (174)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTT-----TTTTCTTCCE
T ss_pred EEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHh--cCCcCCCEEECCCC-CCCccChh-----HhCCcchhhE
Confidence 4555555432124333 4899999999998743333334 78999999999999 78877543 4568899999
Q ss_pred EeccCccCccccccccccccCCCCccEEEecCCCCcccc
Q 036689 83 LNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNI 121 (595)
Q Consensus 83 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~ 121 (595)
|+++++ .+..+... .+..+++|++|+++++ .+...
T Consensus 86 L~L~~N-~l~~l~~~--~~~~l~~L~~L~L~~N-~~~c~ 120 (174)
T 2r9u_A 86 LDLNDN-HLKSIPRG--AFDNLKSLTHIYLYNN-PWDCE 120 (174)
T ss_dssp EECCSS-CCCCCCTT--TTTTCTTCSEEECCSS-CBCTT
T ss_pred EECCCC-ccceeCHH--HhccccCCCEEEeCCC-Ccccc
Confidence 999995 77776332 2678999999999995 45543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=1.2e-06 Score=88.20 Aligned_cols=87 Identities=23% Similarity=0.355 Sum_probs=54.1
Q ss_pred cccCCCcEEEcccCCCceE--e--cCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCccc
Q 036689 45 EGFLQLKHLHVQNNPDFMC--I--VDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN 120 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~--i--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 120 (595)
.++++|+.|.+.+.. ... + .+...+......+|+|++|.++++..+. + .+ + ..++|+.|++..|. +..
T Consensus 136 ~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l--~~--~-~~~~L~~L~L~~~~-l~~ 207 (362)
T 2ra8_A 136 EKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I--GK--K-PRPNLKSLEIISGG-LPD 207 (362)
T ss_dssp HHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C--CS--C-BCTTCSEEEEECSB-CCH
T ss_pred hhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e--cc--c-cCCCCcEEEEecCC-CCh
Confidence 689999999996541 110 0 0011122234578999999998863322 2 11 2 37899999999864 543
Q ss_pred ccchhhhh--cCCCCcEEEEcc
Q 036689 121 IFLLSAAK--CLPRLERIAVIN 140 (595)
Q Consensus 121 ~~~~~~~~--~l~~L~~L~l~~ 140 (595)
... ..+. .+++|++|++..
T Consensus 208 ~~l-~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 208 SVV-EDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHH-HHHHHSBCTTCCEEEEEC
T ss_pred HHH-HHHHHccCCCCcEEEEec
Confidence 322 2333 799999999964
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.08 E-value=3.1e-07 Score=93.23 Aligned_cols=94 Identities=17% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc---hhhhhccCCCcEEEeecccccceecccc
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS---ASMLGSFEHLQHLEIRYCKGLQEIISKE 298 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 298 (595)
.++|++|++++|.+++.+...++..+ ...++|++|+|++| .+++... ...+...++|++|++++|. +++.....
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~ 230 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALA 230 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHH
Confidence 34566666666655443222222222 23555666666654 2333110 1123445566666666665 44332111
Q ss_pred cCCCCCCCCcCCCcccEEeecCCC
Q 036689 299 GADDQVPPNFVFPQVTILRLVGLP 322 (595)
Q Consensus 299 ~~~~~~~~~~~l~~L~~L~L~~~~ 322 (595)
... .....++|++|+|++++
T Consensus 231 l~~----~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LAR----AAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHH----HHHHCSSCCEEECTTSS
T ss_pred HHH----HHHhCCCCCEEeccCCC
Confidence 100 00014566666666643
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.03 E-value=1.3e-05 Score=80.47 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=73.8
Q ss_pred EEEeccCCCCccccccccccccCCCcEEEccc-CCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCC
Q 036689 26 YLCLDKSQDVKNVLFDLDREGFLQLKHLHVQN-NPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSF 104 (595)
Q Consensus 26 ~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l 104 (595)
.++.++.+....++. + +.+++|++|+|++ | .++.+++. .+..+++|++|+|+++ +++.+... .+..+
T Consensus 12 ~v~~~~~n~l~~ip~-l--~~~~~L~~L~l~~~n-~l~~~~~~-----~~~~l~~L~~L~l~~N-~l~~~~~~--~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-L--PGAENLTELYIENQQ-HLQHLELR-----DLRGLGELRNLTIVKS-GLRFVAPD--AFHFT 79 (347)
T ss_dssp CEECCSSCCCTTTTT-S--CSCSCCSEEECCSCS-SCCEECGG-----GSCSCCCCSEEECCSS-CCCEECTT--GGGSC
T ss_pred EEEcCCCCCCCccCC-C--CCCCCeeEEEccCCC-CCCCcChh-----HhccccCCCEEECCCC-ccceeCHH--HhcCC
Confidence 456666644455655 4 7888999999986 5 78887544 5677889999999985 77776332 36788
Q ss_pred CCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689 105 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR 142 (595)
Q Consensus 105 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 142 (595)
++|++|+|++ +.++.+++ ..+..++ |++|++.+++
T Consensus 80 ~~L~~L~l~~-N~l~~~~~-~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 80 PRLSRLNLSF-NALESLSW-KTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCCCEEECCS-SCCSCCCS-TTTCSCC-CCEEECCSSC
T ss_pred cCCCEEeCCC-CccceeCH-HHcccCC-ceEEEeeCCC
Confidence 9999999998 57887764 4555555 8899888744
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.98 E-value=4.6e-07 Score=91.91 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=50.8
Q ss_pred cccCCCcEEEcccCCCceEecCCCCCCCc-CCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccc
Q 036689 45 EGFLQLKHLHVQNNPDFMCIVDSKERVPL-DDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL 123 (595)
Q Consensus 45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~ 123 (595)
.-.++|++|+|++| .++..... ..... ....++|++|+|+++ .+....... -...+++|++|++++| .+++...
T Consensus 69 ~~~~~L~~L~Ls~n-~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~-l~~~L~~L~~L~Ls~n-~l~~~~~ 143 (372)
T 3un9_A 69 EVLSSLRQLNLAGV-RMTPVKCT-VVAAVLGSGRHALDEVNLASC-QLDPAGLRT-LLPVFLRARKLGLQLN-SLGPEAC 143 (372)
T ss_dssp HHHTTCCEEECTTS-CCCHHHHH-HHHHHHSSCSSCEEEEECTTC-CCCHHHHHH-THHHHHTEEEEECCSS-CCCHHHH
T ss_pred HHHhhCCEEEecCC-CCCHHHHH-HHHHHHhhCCCCceEEEecCC-CCCHHHHHH-HHHHHHhccHhhcCCC-CCCHHHH
Confidence 45677888888887 45422100 00000 112357888888886 444321111 0234567888888886 5654322
Q ss_pred hhh---h-hcCCCCcEEEEcccC
Q 036689 124 LSA---A-KCLPRLERIAVINCR 142 (595)
Q Consensus 124 ~~~---~-~~l~~L~~L~l~~c~ 142 (595)
... + ...++|++|++++|.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC
T ss_pred HHHHHHHHhcCCccceeeCCCCC
Confidence 111 1 246788888888864
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.91 E-value=0.00071 Score=69.02 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=64.8
Q ss_pred ccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccc
Q 036689 433 LLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLD 512 (595)
Q Consensus 433 l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~ 512 (595)
+..+....+..+.+|+.+.+.+ .+..+ ....+.+++.|+.+.+.. .++.+....+. .+++|+.+.+.+
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~-------~c~~L~~i~lp~ 320 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSS--RITELPESVFA-------GCISLKSIDIPE 320 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTT-------TCTTCCEEECCT
T ss_pred ceEcccceeeecccccEEeccc--cccee-cCcccccccccccccCCC--cccccCceeec-------CCCCcCEEEeCC
Confidence 3444444556667777777654 23333 233445667777777742 25555443332 356777777764
Q ss_pred cccccccccCcccccCCCccEEEEeCCCCccccCCC-CCCCCCcceEEecc
Q 036689 513 LDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTG-ELSTPPRVDVMYRN 562 (595)
Q Consensus 513 ~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~i~~ 562 (595)
+++.+...++. .|.+|+.+.+-. +++.++.. ..+|++|+.+.+.+
T Consensus 321 --~v~~I~~~aF~-~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 321 --GITQILDDAFA-GCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp --TCCEECTTTTT-TCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred --cccEehHhHhh-CCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 46666655543 467777777743 45555433 45677777777764
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.0028 Score=64.50 Aligned_cols=297 Identities=11% Similarity=0.094 Sum_probs=156.1
Q ss_pred cccccccc-cccEEEeccCCCCccccccccccccCCCcEEEcccC--CCceEecCCCCCCCcCCcCCCccEEeccCccCc
Q 036689 15 SKKLQGIK-DVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNN--PDFMCIVDSKERVPLDDAFPILESLNLYNLIKL 91 (595)
Q Consensus 15 ~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l 91 (595)
..+|...+ .|+.+.+-+. ++.+... ...+|++|+.+.+..+ ..++.+... .+..+.+|+.+.+.+ ++
T Consensus 56 ~~aF~~~~~~L~sI~iP~s--vt~Ig~~-AF~~C~~L~~i~~~~n~p~~l~~Ig~~-----aF~~c~~L~~i~~~~--~~ 125 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT--VTEIGSN-AFYNCTSLKRVTIQDNKPSCVKKIGRQ-----AFMFCSELTDIPILD--SV 125 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT--CCEECTT-TTTTCTTCCEEEEGGGCCCCCCEECTT-----TTTTCTTCCBCGGGT--TC
T ss_pred HhhccCCCCcCEEEEECCC--eeEEhHH-HhhCCccCceEeecCCCCCeeeEechh-----hchhcccceeeccCC--cc
Confidence 45555553 5888888543 2333322 2378899999998764 357777444 566677788777664 44
Q ss_pred cccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEe
Q 036689 92 ERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLC 171 (595)
Q Consensus 92 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 171 (595)
+.+. ...+..+.+|+.+.+.. .++.+.. ..+..+.+|+.+.+.. .+..+.. ..+...+|+++.
T Consensus 126 ~~I~--~~aF~~c~~L~~i~lp~--~~~~I~~-~~F~~c~~L~~i~~~~--~~~~I~~----------~aF~~~~l~~i~ 188 (394)
T 4gt6_A 126 TEID--SEAFHHCEELDTVTIPE--GVTSVAD-GMFSYCYSLHTVTLPD--SVTAIEE----------RAFTGTALTQIH 188 (394)
T ss_dssp SEEC--TTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEECCT--TCCEECT----------TTTTTCCCSEEE
T ss_pred ceeh--hhhhhhhcccccccccc--eeeeecc-cceecccccccccccc--eeeEecc----------ccccccceeEEE
Confidence 5542 22356778888888864 3444432 5667788888887754 2333321 111223333333
Q ss_pred c------------CCCCCccccccccccc-cccccccccccCccccccccccCCCccccccccCCccceeecccccceee
Q 036689 172 L------------GSLPELTSFCCEVKKN-RQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKI 238 (595)
Q Consensus 172 l------------~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 238 (595)
+ .+|..+.......... .........+... ...+........+....+.. .++.+
T Consensus 189 ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ip~-~v~~i 256 (394)
T 4gt6_A 189 IPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANG-----------DYALIRYPSQREDPAFKIPN-GVARI 256 (394)
T ss_dssp ECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTS-----------CEEEEECCTTCCCSEEECCT-TEEEE
T ss_pred ECCcccccccchhhhccccceecccccccccccceeecccccc-----------cccccccccccccceEEcCC-cceEc
Confidence 3 2233333322111000 0000000000000 00000000112223333221 33444
Q ss_pred cccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEee
Q 036689 239 WHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRL 318 (595)
Q Consensus 239 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 318 (595)
+ ...|..+.+|+.+.+.. .+..+ ....+.+++.|+.+.+.. .++.++...+.+ +.+|+.+.|
T Consensus 257 ~-----~~aF~~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~--------c~~L~~i~l 318 (394)
T 4gt6_A 257 E-----THAFDSCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSS--RITELPESVFAG--------CISLKSIDI 318 (394)
T ss_dssp C-----TTTTTTCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTT--------CTTCCEEEC
T ss_pred c-----cceeeecccccEEeccc--cccee-cCcccccccccccccCCC--cccccCceeecC--------CCCcCEEEe
Confidence 2 22225678888888863 34443 233457888899888853 377777655554 788999988
Q ss_pred cCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCC
Q 036689 319 VGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKD 396 (595)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 396 (595)
.. .++.+...... .|.+|+.+.+.. .++.+.. ..+..+++|+.+++.++.
T Consensus 319 p~--~v~~I~~~aF~-~C~~L~~i~ip~--sv~~I~~-----------------------~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 319 PE--GITQILDDAFA-GCEQLERIAIPS--SVTKIPE-----------------------SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CT--TCCEECTTTTT-TCTTCCEEEECT--TCCBCCG-----------------------GGGTTCTTCCEEEESSCH
T ss_pred CC--cccEehHhHhh-CCCCCCEEEECc--ccCEEhH-----------------------hHhhCCCCCCEEEECCce
Confidence 64 24444333221 278888888853 2555555 335678889998887753
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.76 E-value=5.5e-05 Score=75.98 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=6.9
Q ss_pred hccCCCcEEEeecc
Q 036689 275 GSFEHLQHLEIRYC 288 (595)
Q Consensus 275 ~~l~~L~~L~l~~c 288 (595)
..+|+|+.|.++++
T Consensus 169 ~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 169 DAMPLLNNLKIKGT 182 (362)
T ss_dssp HTCTTCCEEEEECC
T ss_pred hcCCCCcEEEEeCC
Confidence 44455555555444
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.65 E-value=0.00011 Score=73.69 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=34.1
Q ss_pred cCCccceeeccc-ccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecc
Q 036689 221 ALSNLEVLEMNK-VNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIIS 296 (595)
Q Consensus 221 ~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 296 (595)
.+++|+.|+|++ |.++.+ +...+..+++|+.|+|+++ .++.+++. .+.++++|++|+|+++. ++.++.
T Consensus 29 ~~~~L~~L~l~~~n~l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~~~ 97 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHL-----ELRDLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFNA-LESLSW 97 (347)
T ss_dssp SCSCCSEEECCSCSSCCEE-----CGGGSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSSC-CSCCCS
T ss_pred CCCCeeEEEccCCCCCCCc-----ChhHhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCCc-cceeCH
Confidence 344555666654 455554 3221234555666666543 45544332 33555566666665555 555443
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.39 E-value=0.097 Score=52.56 Aligned_cols=106 Identities=12% Similarity=0.137 Sum_probs=62.6
Q ss_pred ccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc
Q 036689 249 LCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY 328 (595)
Q Consensus 249 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 328 (595)
..+.+|+.+.+.. .++.+.. ..+.++.+|+.+.+.. +++.++...+.+ +++|+.+.+.+ ..++.+.
T Consensus 237 ~~~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~aF~~--------c~~L~~i~l~~-~~i~~I~ 302 (379)
T 4h09_A 237 YGMKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFYA--KVKTVPYLLCSG--------CSNLTKVVMDN-SAIETLE 302 (379)
T ss_dssp TTCSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEECC--CCSEECTTTTTT--------CTTCCEEEECC-TTCCEEC
T ss_pred cCCccceEEEcCC--CccEeCc-cccceeehhccccccc--cceecccccccc--------ccccccccccc-cccceeh
Confidence 3567788877763 3555433 3456777888887753 266665544433 77888888865 2244443
Q ss_pred CCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccC
Q 036689 329 PGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDG 394 (595)
Q Consensus 329 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 394 (595)
.... ..|.+|+.+.+.. .++.+.. ..+..+.+|+.+.+..
T Consensus 303 ~~aF-~~c~~L~~i~lp~--~l~~I~~-----------------------~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 303 PRVF-MDCVKLSSVTLPT--ALKTIQV-----------------------YAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTT-TTCTTCCEEECCT--TCCEECT-----------------------TTTTTCTTCCCCCCCT
T ss_pred hhhh-cCCCCCCEEEcCc--cccEEHH-----------------------HHhhCCCCCCEEEECC
Confidence 3321 1267788877743 2444444 2345677788777754
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.05 E-value=0.087 Score=52.90 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=69.8
Q ss_pred cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689 221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300 (595)
Q Consensus 221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 300 (595)
.+..|+.+.+..+ ++.++. ..+..+.+|+.+.+. .+++.+.. ..+..|++|+.+.+.++. ++.++...+.
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~-----~aF~~~~~l~~i~l~--~~i~~i~~-~aF~~c~~L~~i~l~~~~-i~~I~~~aF~ 307 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGS-----FLLQNCTALKTLNFY--AKVKTVPY-LLCSGCSNLTKVVMDNSA-IETLEPRVFM 307 (379)
T ss_dssp TCSSCCEEEECTT-CCEECT-----TTTTTCTTCCEEEEC--CCCSEECT-TTTTTCTTCCEEEECCTT-CCEECTTTTT
T ss_pred CCccceEEEcCCC-ccEeCc-----cccceeehhcccccc--ccceeccc-cccccccccccccccccc-cceehhhhhc
Confidence 4677888877654 555533 323567899999986 35666533 356899999999998776 8888775555
Q ss_pred CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeec
Q 036689 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVS 345 (595)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 345 (595)
+ +.+|+.+.|.. .++.+..... ..|.+|+.+.+.
T Consensus 308 ~--------c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip 341 (379)
T 4h09_A 308 D--------CVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYP 341 (379)
T ss_dssp T--------CTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCC
T ss_pred C--------CCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEEC
Confidence 5 88999999954 2444433321 126777777664
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.72 E-value=0.00083 Score=60.43 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=19.8
Q ss_pred cCCCCccEEEecCCCCccccc---chhhhhcCCCCcEEEEccc
Q 036689 102 QSFNELKTIRVELCDQLSNIF---LLSAAKCLPRLERIAVINC 141 (595)
Q Consensus 102 ~~l~~L~~L~L~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c 141 (595)
...+.|++|+|++|+.+.+.. ....+...++|++|++++|
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 345566666666653443311 1123344556666666654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.97 E-value=0.0016 Score=58.59 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=29.0
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc---hhhhhccCCCcEEEe
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS---ASMLGSFEHLQHLEI 285 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~---~~~~~~l~~L~~L~l 285 (595)
.++|++|++++|.+.+.+...+...+ ...++|++|+|+++ .+++.-. ...+...+.|++|++
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEe
Confidence 45666667766655543222222222 23456666666654 3333110 112344455666666
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.95 E-value=0.0051 Score=58.49 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=21.7
Q ss_pred cCCCccEEEEecCCCCccccch-hhhhccCCCcEEEeeccccccee
Q 036689 250 CFQNLTRLILRKCPKLKYIFSA-SMLGSFEHLQHLEIRYCKGLQEI 294 (595)
Q Consensus 250 ~l~~L~~L~L~~c~~l~~l~~~-~~~~~l~~L~~L~l~~c~~l~~~ 294 (595)
.+++|+.|+|+++ .++.+... ..+..+++|++|+++++. ++++
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~ 211 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE 211 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCc
Confidence 3555666666542 44443221 133456666666666655 5444
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.44 E-value=0.014 Score=55.38 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=5.5
Q ss_pred CCCCccEEEecC
Q 036689 103 SFNELKTIRVEL 114 (595)
Q Consensus 103 ~l~~L~~L~L~~ 114 (595)
.+++|+.|+|++
T Consensus 194 ~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 194 KAPNLKILNLSG 205 (267)
T ss_dssp HSTTCCEEECTT
T ss_pred hCCCCCEEECCC
Confidence 344444444444
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=83.03 E-value=1.8 Score=35.66 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=27.6
Q ss_pred CCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCC
Q 036689 105 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN 143 (595)
Q Consensus 105 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 143 (595)
++|++|+|++ +.++.++. ..+..+++|++|++.+++.
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~-~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPP-GLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTT-SCCSSCCT-TTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCC-CcCCccCh-hhhhhccccCEEEecCCCe
Confidence 4688888888 57777664 6677788888888887543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.70 E-value=2 Score=35.39 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=5.4
Q ss_pred hccCCCcEEEeec
Q 036689 275 GSFEHLQHLEIRY 287 (595)
Q Consensus 275 ~~l~~L~~L~l~~ 287 (595)
..+++|++|+|.+
T Consensus 52 ~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 52 DALPALRTAHLGA 64 (130)
T ss_dssp GGCTTCCEEECCS
T ss_pred hhccccCEEEecC
Confidence 3344444444443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=75.97 E-value=1.1 Score=39.91 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=18.8
Q ss_pred CccceeecccccceeecccCCCccccccCCCccEEEEecC
Q 036689 223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKC 262 (595)
Q Consensus 223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 262 (595)
+.|+.|+|++|.+.+.+...+-..+ ..-..|++|+|+++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL-~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRST-LVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHT-TTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHH-hhCCceeEEECCCC
Confidence 4566666666655543322222221 22244666666643
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=64.91 E-value=3 Score=37.12 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=18.6
Q ss_pred CCccceeecccccceeecccCCCccccccCCCccEEEEec
Q 036689 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRK 261 (595)
Q Consensus 222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 261 (595)
-+.|+.|+|++|.+.+.+...+...+ ..-+.|+.|+|++
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVES 107 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCS
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCC
Confidence 34566666666655544333332222 2234555555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.87 E-value=74 Score=24.38 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=25.6
Q ss_pred ccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcC
Q 036689 433 LLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFG 480 (595)
Q Consensus 433 l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 480 (595)
++.+....+..+++|+.+.|-. .++.+ ....+.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~--~v~~I-g~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP--NIGLL-YDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT--TSSCC-CTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCC--chheE-cHHHHhccCCccEEEEcC
Confidence 4455555666677777777753 34444 223445666677666643
Done!