Query 036691
Match_columns 426
No_of_seqs 420 out of 2455
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.9 1.6E-21 3.5E-26 158.2 11.2 97 41-139 7-103 (103)
2 KOG0003 Ubiquitin/60s ribosoma 99.8 5.8E-23 1.3E-27 159.8 -0.6 101 286-393 1-105 (128)
3 cd01802 AN1_N ubiquitin-like d 99.8 1.1E-19 2.4E-24 147.5 11.1 92 270-361 9-103 (103)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 1.8E-19 3.8E-24 138.2 9.3 74 286-361 1-74 (74)
5 cd01807 GDX_N ubiquitin-like d 99.8 8.1E-19 1.8E-23 134.5 9.2 73 286-358 1-73 (74)
6 PTZ00044 ubiquitin; Provisiona 99.8 1.3E-18 2.9E-23 134.1 9.6 76 286-361 1-76 (76)
7 cd01793 Fubi Fubi ubiquitin-li 99.8 1.1E-18 2.4E-23 133.7 8.1 74 62-139 1-74 (74)
8 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.9E-18 4.2E-23 132.4 8.7 74 288-361 1-74 (74)
9 cd01807 GDX_N ubiquitin-like d 99.8 3E-18 6.6E-23 131.3 8.0 73 62-136 1-73 (74)
10 KOG0004 Ubiquitin/40S ribosoma 99.7 9.8E-19 2.1E-23 147.0 4.5 78 286-363 1-78 (156)
11 PTZ00044 ubiquitin; Provisiona 99.7 7.2E-18 1.6E-22 130.0 8.4 76 62-139 1-76 (76)
12 cd01797 NIRF_N amino-terminal 99.7 1.1E-17 2.3E-22 129.2 8.7 74 286-359 1-76 (78)
13 KOG0003 Ubiquitin/60s ribosoma 99.7 2.9E-19 6.3E-24 139.3 -0.5 76 62-139 1-76 (128)
14 cd01803 Ubiquitin Ubiquitin. U 99.7 1.8E-17 3.9E-22 127.7 9.5 76 286-361 1-76 (76)
15 cd01806 Nedd8 Nebb8-like ubiq 99.7 2.3E-17 5E-22 127.1 9.7 76 286-361 1-76 (76)
16 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.2E-17 2.7E-22 127.9 7.9 74 64-139 1-74 (74)
17 cd01797 NIRF_N amino-terminal 99.7 2.7E-17 5.9E-22 126.9 7.9 74 62-137 1-76 (78)
18 cd01804 midnolin_N Ubiquitin-l 99.7 5E-17 1.1E-21 125.7 9.1 77 285-362 1-77 (78)
19 cd01798 parkin_N amino-termina 99.7 4.4E-17 9.5E-22 123.5 8.2 70 288-357 1-70 (70)
20 KOG0004 Ubiquitin/40S ribosoma 99.7 7.2E-18 1.6E-22 141.7 3.9 78 62-141 1-78 (156)
21 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 7.8E-17 1.7E-21 122.5 8.3 72 285-356 1-72 (73)
22 cd01803 Ubiquitin Ubiquitin. U 99.7 8.5E-17 1.8E-21 123.9 8.3 76 62-139 1-76 (76)
23 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.1E-16 2.3E-21 123.3 8.7 76 62-139 1-76 (76)
24 cd01794 DC_UbP_C dendritic cel 99.7 9.7E-17 2.1E-21 121.1 7.9 68 289-356 2-69 (70)
25 KOG0005 Ubiquitin-like protein 99.7 4.3E-17 9.4E-22 113.3 4.5 70 286-355 1-70 (70)
26 KOG0005 Ubiquitin-like protein 99.7 4.4E-17 9.6E-22 113.3 4.1 70 62-133 1-70 (70)
27 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.7E-16 3.6E-21 120.7 7.5 71 61-133 1-71 (73)
28 cd01805 RAD23_N Ubiquitin-like 99.7 3.8E-16 8.3E-21 120.7 9.7 73 286-358 1-75 (77)
29 cd01804 midnolin_N Ubiquitin-l 99.7 1.9E-16 4.1E-21 122.4 7.9 77 61-140 1-77 (78)
30 cd01798 parkin_N amino-termina 99.7 1.9E-16 4E-21 120.0 7.3 70 64-135 1-70 (70)
31 cd01809 Scythe_N Ubiquitin-lik 99.7 4.9E-16 1.1E-20 118.4 9.2 72 286-357 1-72 (72)
32 cd01794 DC_UbP_C dendritic cel 99.7 2.8E-16 6E-21 118.6 7.2 68 65-134 2-69 (70)
33 cd01800 SF3a120_C Ubiquitin-li 99.6 5.8E-16 1.3E-20 119.2 8.2 71 293-363 5-75 (76)
34 cd01808 hPLIC_N Ubiquitin-like 99.6 8.4E-16 1.8E-20 116.8 8.7 71 286-357 1-71 (71)
35 cd01792 ISG15_repeat1 ISG15 ub 99.6 9.1E-16 2E-20 119.3 8.0 73 285-357 2-76 (80)
36 PF00240 ubiquitin: Ubiquitin 99.6 1.4E-15 3E-20 114.9 8.6 69 291-359 1-69 (69)
37 cd01805 RAD23_N Ubiquitin-like 99.6 1.3E-15 2.9E-20 117.6 8.7 73 62-136 1-75 (77)
38 cd01809 Scythe_N Ubiquitin-lik 99.6 1.4E-15 3E-20 115.8 8.1 72 62-135 1-72 (72)
39 cd01763 Sumo Small ubiquitin-r 99.6 3.9E-15 8.5E-20 117.6 10.0 79 283-361 9-87 (87)
40 cd01796 DDI1_N DNA damage indu 99.6 1.8E-15 4E-20 114.7 7.6 68 288-355 1-70 (71)
41 cd01808 hPLIC_N Ubiquitin-like 99.6 2.8E-15 6E-20 113.9 7.8 71 62-135 1-71 (71)
42 cd01796 DDI1_N DNA damage indu 99.6 2.4E-15 5.2E-20 114.1 7.0 68 64-132 1-69 (71)
43 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.7E-15 5.9E-20 116.6 6.9 73 61-135 2-76 (80)
44 PF00240 ubiquitin: Ubiquitin 99.6 7.7E-15 1.7E-19 110.8 8.5 69 67-137 1-69 (69)
45 cd01790 Herp_N Homocysteine-re 99.6 6.6E-15 1.4E-19 112.5 7.5 72 285-356 1-78 (79)
46 cd01800 SF3a120_C Ubiquitin-li 99.6 7.6E-15 1.6E-19 113.0 7.1 70 69-140 5-74 (76)
47 cd01763 Sumo Small ubiquitin-r 99.5 3.7E-14 8.1E-19 112.0 9.3 80 58-139 8-87 (87)
48 cd01812 BAG1_N Ubiquitin-like 99.5 3.4E-14 7.3E-19 107.9 8.1 70 286-356 1-70 (71)
49 cd01790 Herp_N Homocysteine-re 99.5 3.7E-14 8.1E-19 108.4 7.4 73 61-134 1-78 (79)
50 cd01813 UBP_N UBP ubiquitin pr 99.5 1.1E-13 2.4E-18 105.7 8.3 70 286-356 1-73 (74)
51 cd01812 BAG1_N Ubiquitin-like 99.5 8.4E-14 1.8E-18 105.7 7.1 69 62-133 1-69 (71)
52 cd01813 UBP_N UBP ubiquitin pr 99.4 2.2E-13 4.7E-18 104.0 7.1 69 62-133 1-72 (74)
53 smart00213 UBQ Ubiquitin homol 99.4 8.3E-13 1.8E-17 97.8 7.5 64 286-350 1-64 (64)
54 cd01799 Hoil1_N Ubiquitin-like 99.4 8.8E-13 1.9E-17 100.8 7.7 65 291-356 8-74 (75)
55 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 3.9E-13 8.5E-18 101.2 5.5 56 301-356 15-74 (75)
56 cd01799 Hoil1_N Ubiquitin-like 99.4 8.4E-13 1.8E-17 100.9 7.3 66 67-134 8-74 (75)
57 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 4.7E-13 1E-17 100.8 4.5 53 81-134 19-74 (75)
58 smart00213 UBQ Ubiquitin homol 99.3 2E-12 4.4E-17 95.7 6.6 64 62-128 1-64 (64)
59 TIGR00601 rad23 UV excision re 99.3 2.6E-12 5.7E-17 127.2 9.1 73 286-358 1-76 (378)
60 cd01814 NTGP5 Ubiquitin-like N 99.3 1.4E-12 2.9E-17 104.9 5.0 77 60-137 3-92 (113)
61 cd01795 USP48_C USP ubiquitin- 99.3 2.5E-12 5.5E-17 100.1 5.6 59 1-59 19-79 (107)
62 cd01814 NTGP5 Ubiquitin-like N 99.3 4.3E-12 9.4E-17 102.0 5.8 78 284-361 3-94 (113)
63 TIGR00601 rad23 UV excision re 99.3 8.2E-12 1.8E-16 123.7 8.0 72 62-135 1-75 (378)
64 cd01795 USP48_C USP ubiquitin- 99.2 1.9E-11 4.2E-16 95.2 6.5 63 73-136 16-78 (107)
65 cd01769 UBL Ubiquitin-like dom 99.2 7.6E-11 1.6E-15 88.5 8.1 67 290-356 2-68 (69)
66 PF11976 Rad60-SLD: Ubiquitin- 99.1 1.6E-10 3.4E-15 87.9 7.6 71 286-356 1-72 (72)
67 KOG0010 Ubiquitin-like protein 99.1 6.3E-11 1.4E-15 117.5 6.8 75 285-360 15-89 (493)
68 cd01769 UBL Ubiquitin-like dom 99.1 2.9E-10 6.2E-15 85.3 7.0 66 66-133 2-67 (69)
69 KOG0010 Ubiquitin-like protein 99.1 1.6E-10 3.5E-15 114.6 6.4 75 60-137 14-88 (493)
70 KOG0001 Ubiquitin and ubiquiti 99.1 1.2E-09 2.7E-14 82.4 9.3 73 288-360 2-74 (75)
71 KOG0011 Nucleotide excision re 99.1 3.5E-10 7.6E-15 106.8 7.4 74 286-359 1-76 (340)
72 cd01811 OASL_repeat1 2'-5' oli 99.0 2.5E-10 5.4E-15 83.8 4.9 59 1-60 15-79 (80)
73 PF11976 Rad60-SLD: Ubiquitin- 99.0 1.3E-09 2.9E-14 82.7 8.4 70 62-133 1-71 (72)
74 KOG0011 Nucleotide excision re 98.9 1.6E-09 3.4E-14 102.4 6.5 72 62-135 1-74 (340)
75 KOG0001 Ubiquitin and ubiquiti 98.9 5.5E-09 1.2E-13 78.8 8.5 72 64-137 2-73 (75)
76 cd01789 Alp11_N Ubiquitin-like 98.9 1.1E-08 2.4E-13 80.0 8.8 70 63-133 3-79 (84)
77 cd01789 Alp11_N Ubiquitin-like 98.8 1.9E-08 4E-13 78.8 8.9 69 287-355 3-79 (84)
78 cd01788 ElonginB Ubiquitin-lik 98.8 2.3E-08 4.9E-13 80.2 7.7 99 213-311 1-100 (119)
79 cd01811 OASL_repeat1 2'-5' oli 98.7 3.1E-08 6.6E-13 72.9 6.2 68 213-281 1-73 (80)
80 PF14560 Ubiquitin_2: Ubiquiti 98.6 1.7E-07 3.8E-12 73.9 8.2 69 287-355 3-81 (87)
81 PLN02560 enoyl-CoA reductase 98.6 1.2E-07 2.5E-12 92.0 8.1 69 286-354 1-80 (308)
82 cd01788 ElonginB Ubiquitin-lik 98.6 1.3E-07 2.9E-12 75.9 6.9 76 63-139 2-84 (119)
83 PF13881 Rad60-SLD_2: Ubiquiti 98.6 4.1E-07 8.9E-12 74.7 10.0 76 286-361 3-92 (111)
84 PLN02560 enoyl-CoA reductase 98.5 1.9E-07 4.1E-12 90.6 7.3 69 62-132 1-80 (308)
85 PF13881 Rad60-SLD_2: Ubiquiti 98.5 7.3E-07 1.6E-11 73.2 9.5 76 61-137 2-90 (111)
86 PF14560 Ubiquitin_2: Ubiquiti 98.5 6.2E-07 1.4E-11 70.7 8.7 70 63-133 3-81 (87)
87 KOG4248 Ubiquitin-like protein 98.5 2.4E-07 5.1E-12 99.1 6.3 72 63-137 4-75 (1143)
88 KOG4248 Ubiquitin-like protein 98.4 6.2E-07 1.3E-11 96.0 6.9 72 287-359 4-75 (1143)
89 cd01801 Tsc13_N Ubiquitin-like 98.3 2.3E-06 5E-11 65.8 6.6 52 303-354 20-74 (77)
90 cd00196 UBQ Ubiquitin-like pro 98.2 6.4E-06 1.4E-10 59.2 8.0 65 292-356 4-68 (69)
91 PF11543 UN_NPL4: Nuclear pore 98.2 3.3E-06 7.1E-11 65.2 6.1 71 284-355 3-78 (80)
92 cd01801 Tsc13_N Ubiquitin-like 98.2 4E-06 8.6E-11 64.5 6.1 52 80-132 20-74 (77)
93 PF11543 UN_NPL4: Nuclear pore 98.1 3.3E-06 7.2E-11 65.2 5.0 71 60-132 3-77 (80)
94 KOG0006 E3 ubiquitin-protein l 98.1 8.1E-06 1.8E-10 76.7 6.7 73 286-358 1-77 (446)
95 KOG3493 Ubiquitin-like protein 98.0 1.8E-06 3.9E-11 61.7 1.5 69 287-355 3-71 (73)
96 cd00196 UBQ Ubiquitin-like pro 98.0 2.1E-05 4.7E-10 56.3 7.1 64 68-133 4-67 (69)
97 KOG3493 Ubiquitin-like protein 98.0 1.5E-06 3.2E-11 62.1 0.7 69 213-281 2-70 (73)
98 KOG1769 Ubiquitin-like protein 97.9 0.00011 2.4E-09 57.9 9.4 79 284-362 19-97 (99)
99 KOG0006 E3 ubiquitin-protein l 97.9 1.7E-05 3.7E-10 74.6 5.5 70 62-133 1-73 (446)
100 PF11470 TUG-UBL1: GLUT4 regul 97.6 0.0003 6.5E-09 51.9 6.7 63 292-354 3-65 (65)
101 KOG1872 Ubiquitin-specific pro 97.5 0.00028 6.1E-09 70.4 7.7 74 286-360 4-78 (473)
102 KOG1872 Ubiquitin-specific pro 97.3 0.00039 8.4E-09 69.4 6.5 72 62-136 4-76 (473)
103 PF13019 Telomere_Sde2: Telome 97.3 0.0013 2.8E-08 57.1 8.5 77 286-362 1-89 (162)
104 PF11470 TUG-UBL1: GLUT4 regul 97.3 0.00097 2.1E-08 49.2 6.5 63 146-208 3-65 (65)
105 KOG4495 RNA polymerase II tran 97.1 0.00063 1.4E-08 52.9 4.3 63 215-277 3-68 (110)
106 KOG4495 RNA polymerase II tran 97.1 0.0015 3.2E-08 50.8 5.7 58 288-346 5-64 (110)
107 KOG1769 Ubiquitin-like protein 97.0 0.0049 1.1E-07 48.7 8.5 80 59-140 18-97 (99)
108 PF08817 YukD: WXG100 protein 96.8 0.0033 7.2E-08 48.4 6.0 68 287-354 4-78 (79)
109 PF00789 UBX: UBX domain; Int 96.8 0.011 2.3E-07 45.8 8.6 70 285-354 6-80 (82)
110 PF13019 Telomere_Sde2: Telome 96.7 0.0073 1.6E-07 52.5 7.9 78 62-140 1-89 (162)
111 COG5227 SMT3 Ubiquitin-like pr 96.7 0.0031 6.7E-08 48.5 4.5 78 285-362 24-101 (103)
112 PF08817 YukD: WXG100 protein 96.5 0.01 2.2E-07 45.7 6.8 69 62-132 3-78 (79)
113 COG5417 Uncharacterized small 96.4 0.02 4.4E-07 42.6 7.4 67 288-354 9-80 (81)
114 PF00789 UBX: UBX domain; Int 96.3 0.031 6.8E-07 43.1 8.7 72 60-132 5-80 (82)
115 smart00166 UBX Domain present 96.0 0.035 7.5E-07 42.8 7.5 69 286-354 5-78 (80)
116 KOG0013 Uncharacterized conser 95.9 0.014 3E-07 52.4 5.1 66 294-359 155-220 (231)
117 PF10302 DUF2407: DUF2407 ubiq 95.8 0.022 4.8E-07 45.6 5.6 58 288-345 3-65 (97)
118 PF10302 DUF2407: DUF2407 ubiq 95.8 0.021 4.5E-07 45.8 5.3 46 74-121 14-63 (97)
119 cd01770 p47_UBX p47-like ubiqu 95.7 0.078 1.7E-06 40.8 7.9 68 285-352 4-75 (79)
120 cd01774 Faf1_like2_UBX Faf1 ik 95.6 0.1 2.2E-06 40.8 8.5 70 284-354 3-82 (85)
121 smart00166 UBX Domain present 95.6 0.073 1.6E-06 41.0 7.5 72 60-132 3-78 (80)
122 COG5417 Uncharacterized small 95.5 0.067 1.5E-06 39.8 6.5 68 214-281 6-80 (81)
123 cd01770 p47_UBX p47-like ubiqu 95.4 0.094 2E-06 40.4 7.5 69 61-130 4-75 (79)
124 cd01767 UBX UBX (ubiquitin reg 95.3 0.12 2.6E-06 39.4 8.0 66 286-352 3-73 (77)
125 cd01772 SAKS1_UBX SAKS1-like U 95.3 0.11 2.3E-06 40.0 7.6 68 286-354 5-77 (79)
126 cd01767 UBX UBX (ubiquitin reg 94.3 0.3 6.6E-06 37.1 7.9 68 61-130 2-73 (77)
127 PF09379 FERM_N: FERM N-termin 94.1 0.35 7.6E-06 36.9 7.9 69 290-358 1-76 (80)
128 KOG0013 Uncharacterized conser 94.1 0.095 2.1E-06 47.2 5.1 61 70-132 155-215 (231)
129 PF14533 USP7_C2: Ubiquitin-sp 94.0 0.43 9.4E-06 44.1 9.6 101 224-326 35-163 (213)
130 cd01773 Faf1_like1_UBX Faf1 ik 94.0 0.4 8.7E-06 37.1 7.8 69 286-355 6-79 (82)
131 cd01772 SAKS1_UBX SAKS1-like U 93.6 0.47 1E-05 36.4 7.8 70 61-132 4-77 (79)
132 KOG1639 Steroid reductase requ 93.6 0.11 2.3E-06 48.0 4.7 69 213-281 1-76 (297)
133 cd01771 Faf1_UBX Faf1 UBX doma 93.6 0.51 1.1E-05 36.4 7.8 69 285-354 4-77 (80)
134 PRK06437 hypothetical protein; 93.4 0.66 1.4E-05 34.4 7.9 59 294-361 9-67 (67)
135 KOG1639 Steroid reductase requ 93.3 0.17 3.7E-06 46.7 5.4 69 286-354 1-76 (297)
136 cd01774 Faf1_like2_UBX Faf1 ik 93.1 0.74 1.6E-05 35.9 8.2 71 60-132 3-82 (85)
137 PF12436 USP7_ICP0_bdg: ICP0-b 93.0 0.32 6.9E-06 46.1 7.2 104 226-329 88-223 (249)
138 KOG3206 Alpha-tubulin folding 92.8 0.26 5.6E-06 44.4 5.8 59 298-356 15-80 (234)
139 PF15044 CLU_N: Mitochondrial 92.8 0.2 4.2E-06 38.3 4.4 57 302-358 1-59 (76)
140 PF14533 USP7_C2: Ubiquitin-sp 92.6 1.4 3.1E-05 40.6 10.8 101 150-252 34-162 (213)
141 KOG3206 Alpha-tubulin folding 92.5 0.4 8.6E-06 43.2 6.4 58 77-134 17-80 (234)
142 cd01771 Faf1_UBX Faf1 UBX doma 92.4 0.92 2E-05 34.9 7.8 70 61-132 4-77 (80)
143 COG5227 SMT3 Ubiquitin-like pr 92.1 0.23 5E-06 38.4 3.9 77 61-139 24-100 (103)
144 cd00754 MoaD Ubiquitin domain 91.7 0.95 2.1E-05 34.4 7.2 60 297-361 17-80 (80)
145 cd01773 Faf1_like1_UBX Faf1 ik 91.6 1.4 3E-05 34.1 7.9 72 60-133 4-79 (82)
146 PRK06488 sulfur carrier protei 91.5 1.3 2.8E-05 32.4 7.5 65 286-361 1-65 (65)
147 PF11620 GABP-alpha: GA-bindin 91.3 0.7 1.5E-05 35.6 5.8 63 297-359 4-66 (88)
148 PF12436 USP7_ICP0_bdg: ICP0-b 91.0 1.5 3.2E-05 41.6 9.1 124 60-184 67-224 (249)
149 cd06409 PB1_MUG70 The MUG70 pr 90.8 0.81 1.7E-05 35.7 5.9 43 288-330 3-48 (86)
150 cd01760 RBD Ubiquitin-like dom 90.5 0.93 2E-05 34.2 5.8 46 288-333 2-47 (72)
151 PRK08364 sulfur carrier protei 90.4 2.6 5.7E-05 31.4 8.2 56 297-361 15-70 (70)
152 smart00455 RBD Raf-like Ras-bi 90.0 1.2 2.5E-05 33.4 6.0 45 288-332 2-46 (70)
153 PLN02799 Molybdopterin synthas 89.6 2.1 4.5E-05 32.9 7.4 71 286-361 2-82 (82)
154 PF14836 Ubiquitin_3: Ubiquiti 89.0 3 6.6E-05 32.6 7.8 65 73-139 15-84 (88)
155 PF11620 GABP-alpha: GA-bindin 88.7 3.1 6.7E-05 32.1 7.4 57 77-134 7-63 (88)
156 PF09379 FERM_N: FERM N-termin 88.2 3.1 6.7E-05 31.5 7.5 58 144-201 1-65 (80)
157 cd06406 PB1_P67 A PB1 domain i 88.1 1.7 3.7E-05 33.3 5.7 44 64-110 5-48 (80)
158 cd06409 PB1_MUG70 The MUG70 pr 87.4 1.6 3.5E-05 34.0 5.3 43 142-184 3-48 (86)
159 cd06406 PB1_P67 A PB1 domain i 86.6 2.8 6E-05 32.2 6.1 44 288-333 5-48 (80)
160 KOG4261 Talin [Cytoskeleton] 85.4 1.6 3.6E-05 46.7 5.8 99 151-249 14-121 (1003)
161 PRK06437 hypothetical protein; 85.4 6.6 0.00014 29.0 7.6 58 70-138 9-66 (67)
162 TIGR01682 moaD molybdopterin c 85.4 6 0.00013 30.1 7.7 60 297-361 17-80 (80)
163 cd01760 RBD Ubiquitin-like dom 85.3 2.6 5.7E-05 31.7 5.4 46 64-110 2-47 (72)
164 PRK05863 sulfur carrier protei 84.5 5 0.00011 29.4 6.6 60 294-361 6-65 (65)
165 smart00295 B41 Band 4.1 homolo 84.3 8.9 0.00019 34.5 9.7 75 284-358 2-84 (207)
166 smart00455 RBD Raf-like Ras-bi 84.1 3.6 7.9E-05 30.7 5.7 44 65-109 3-46 (70)
167 PF15044 CLU_N: Mitochondrial 83.9 1.7 3.7E-05 33.1 3.9 54 156-209 1-56 (76)
168 PRK08053 sulfur carrier protei 83.8 10 0.00022 27.8 8.0 66 286-361 1-66 (66)
169 PF02597 ThiS: ThiS family; I 83.7 4.4 9.5E-05 30.3 6.3 63 297-361 13-77 (77)
170 PF14836 Ubiquitin_3: Ubiquiti 83.3 9.8 0.00021 29.8 8.0 65 296-361 14-84 (88)
171 TIGR01687 moaD_arch MoaD famil 83.2 11 0.00023 29.3 8.4 62 296-361 16-88 (88)
172 KOG4583 Membrane-associated ER 83.2 0.6 1.3E-05 45.1 1.4 76 284-359 8-89 (391)
173 PRK05659 sulfur carrier protei 82.8 9.8 0.00021 27.7 7.6 61 294-361 6-66 (66)
174 PRK08364 sulfur carrier protei 82.7 10 0.00022 28.2 7.7 55 73-138 15-69 (70)
175 cd00565 ThiS ThiaminS ubiquiti 82.5 5.1 0.00011 29.2 5.9 61 294-361 5-65 (65)
176 PRK07440 hypothetical protein; 82.4 11 0.00024 28.0 7.8 68 284-361 3-70 (70)
177 KOG0012 DNA damage inducible p 82.2 2 4.4E-05 42.0 4.6 63 294-356 11-75 (380)
178 PF14453 ThiS-like: ThiS-like 82.1 7.6 0.00016 27.8 6.3 46 77-134 10-55 (57)
179 KOG4598 Putative ubiquitin-spe 81.6 3.9 8.5E-05 43.5 6.7 175 150-328 877-1104(1203)
180 PRK06083 sulfur carrier protei 81.5 9.4 0.0002 29.7 7.3 66 286-361 19-84 (84)
181 PF12754 Blt1: Cell-cycle cont 80.3 0.54 1.2E-05 45.2 0.0 59 305-363 103-183 (309)
182 PF02196 RBD: Raf-like Ras-bin 80.2 6.8 0.00015 29.3 6.0 45 288-332 3-47 (71)
183 TIGR01683 thiS thiamine biosyn 79.2 9.3 0.0002 27.7 6.4 61 294-361 4-64 (64)
184 PF10790 DUF2604: Protein of U 79.1 9.7 0.00021 27.7 6.0 65 294-358 4-72 (76)
185 PRK06944 sulfur carrier protei 79.0 13 0.00028 26.9 7.2 60 294-361 6-65 (65)
186 PRK07696 sulfur carrier protei 78.8 14 0.0003 27.3 7.2 61 294-361 6-67 (67)
187 KOG4261 Talin [Cytoskeleton] 78.8 4 8.7E-05 43.9 5.8 102 222-323 12-122 (1003)
188 PF10790 DUF2604: Protein of U 78.1 11 0.00023 27.5 6.0 65 70-136 4-72 (76)
189 KOG4583 Membrane-associated ER 76.6 1.1 2.4E-05 43.4 0.9 71 60-132 8-84 (391)
190 smart00666 PB1 PB1 domain. Pho 75.8 13 0.00028 28.1 6.6 44 287-331 3-46 (81)
191 PF08337 Plexin_cytopl: Plexin 75.6 12 0.00026 39.3 8.2 75 285-359 189-291 (539)
192 cd00565 ThiS ThiaminS ubiquiti 74.8 15 0.00033 26.7 6.5 57 77-139 9-65 (65)
193 PLN02799 Molybdopterin synthas 74.7 12 0.00026 28.5 6.2 71 62-139 2-82 (82)
194 smart00666 PB1 PB1 domain. Pho 74.6 12 0.00027 28.2 6.3 45 63-109 3-47 (81)
195 cd06407 PB1_NLP A PB1 domain i 73.9 11 0.00024 29.1 5.8 40 219-258 6-46 (82)
196 cd01818 TIAM1_RBD Ubiquitin do 73.9 13 0.00028 28.1 5.8 49 289-337 3-51 (77)
197 cd01817 RGS12_RBD Ubiquitin do 73.4 12 0.00027 28.1 5.6 44 290-333 4-47 (73)
198 cd06407 PB1_NLP A PB1 domain i 73.1 17 0.00036 28.1 6.5 37 294-330 8-45 (82)
199 KOG0012 DNA damage inducible p 72.8 4.5 9.8E-05 39.7 4.0 68 70-138 11-79 (380)
200 cd00754 MoaD Ubiquitin domain 72.8 16 0.00034 27.4 6.5 59 74-139 18-80 (80)
201 PF11069 DUF2870: Protein of u 71.5 11 0.00024 30.0 5.2 31 327-358 3-33 (98)
202 PF02196 RBD: Raf-like Ras-bin 71.3 13 0.00029 27.7 5.5 45 64-109 3-47 (71)
203 KOG2086 Protein tyrosine phosp 71.1 9 0.0002 38.1 5.7 70 283-352 303-376 (380)
204 TIGR01683 thiS thiamine biosyn 69.2 24 0.00052 25.5 6.4 61 70-139 4-64 (64)
205 cd01818 TIAM1_RBD Ubiquitin do 68.4 14 0.00031 27.9 5.0 48 144-191 4-51 (77)
206 cd01764 Urm1 Urm1-like ubuitin 68.3 14 0.00029 29.4 5.3 60 300-361 23-94 (94)
207 PRK06488 sulfur carrier protei 68.2 30 0.00064 25.1 6.7 60 70-139 6-65 (65)
208 TIGR03028 EpsE polysaccharide 68.2 1E+02 0.0023 28.7 17.5 171 121-315 1-192 (239)
209 PRK05659 sulfur carrier protei 66.5 42 0.0009 24.3 7.3 60 70-138 6-65 (66)
210 smart00295 B41 Band 4.1 homolo 65.9 35 0.00077 30.5 8.4 62 140-201 4-72 (207)
211 PRK05863 sulfur carrier protei 65.4 36 0.00077 24.8 6.7 59 70-138 6-64 (65)
212 PRK07440 hypothetical protein; 65.3 54 0.0012 24.3 7.9 67 61-139 4-70 (70)
213 cd06411 PB1_p51 The PB1 domain 64.6 15 0.00033 28.0 4.5 36 296-331 7-42 (78)
214 cd01768 RA RA (Ras-associating 64.6 61 0.0013 24.7 8.5 35 295-329 12-48 (87)
215 PF12754 Blt1: Cell-cycle cont 64.6 2.2 4.7E-05 41.2 0.0 63 60-124 77-159 (309)
216 cd06408 PB1_NoxR The PB1 domai 64.1 45 0.00097 26.0 7.2 43 286-330 3-45 (86)
217 PF08337 Plexin_cytopl: Plexin 63.5 19 0.00041 37.9 6.6 65 72-137 202-291 (539)
218 cd01817 RGS12_RBD Ubiquitin do 62.9 28 0.00061 26.2 5.6 44 66-110 4-47 (73)
219 KOG4250 TANK binding protein k 62.1 17 0.00038 39.0 6.0 43 293-335 322-364 (732)
220 cd01777 SNX27_RA Ubiquitin dom 62.1 16 0.00035 28.5 4.3 42 287-328 3-44 (87)
221 cd01777 SNX27_RA Ubiquitin dom 61.7 14 0.00031 28.8 4.0 39 141-179 3-41 (87)
222 PF00564 PB1: PB1 domain; Int 60.3 38 0.00083 25.5 6.4 44 287-331 3-47 (84)
223 PF00564 PB1: PB1 domain; Int 60.1 38 0.00083 25.5 6.4 46 63-109 3-48 (84)
224 KOG2086 Protein tyrosine phosp 60.0 14 0.0003 36.9 4.6 70 60-130 304-376 (380)
225 COG2104 ThiS Sulfur transfer p 59.4 70 0.0015 23.7 7.5 59 71-138 9-67 (68)
226 cd06411 PB1_p51 The PB1 domain 58.9 32 0.00069 26.3 5.4 36 73-109 8-43 (78)
227 KOG4250 TANK binding protein k 56.6 18 0.00039 38.9 5.0 41 70-111 323-363 (732)
228 TIGR01682 moaD molybdopterin c 56.5 59 0.0013 24.5 6.8 62 71-139 14-80 (80)
229 cd06408 PB1_NoxR The PB1 domai 56.4 58 0.0013 25.4 6.6 46 62-110 3-48 (86)
230 PRK08053 sulfur carrier protei 56.2 76 0.0016 23.1 7.6 61 70-139 6-66 (66)
231 COG2104 ThiS Sulfur transfer p 55.9 82 0.0018 23.4 7.4 60 295-361 9-68 (68)
232 PRK06944 sulfur carrier protei 52.8 83 0.0018 22.5 7.3 56 77-139 10-65 (65)
233 KOG4598 Putative ubiquitin-spe 52.7 22 0.00048 38.1 4.9 199 1-200 881-1121(1203)
234 TIGR02958 sec_mycoba_snm4 secr 52.6 73 0.0016 33.0 8.8 72 287-359 4-82 (452)
235 cd05992 PB1 The PB1 domain is 52.1 58 0.0013 24.3 6.2 44 64-109 3-47 (81)
236 cd05992 PB1 The PB1 domain is 52.1 58 0.0013 24.3 6.2 42 288-330 3-45 (81)
237 PF14453 ThiS-like: ThiS-like 51.9 41 0.00088 24.1 4.7 46 371-425 9-54 (57)
238 TIGR01687 moaD_arch MoaD famil 51.7 1.1E+02 0.0023 23.5 7.7 61 73-139 17-88 (88)
239 KOG2982 Uncharacterized conser 51.5 32 0.00069 33.6 5.4 56 77-132 352-414 (418)
240 PRK11130 moaD molybdopterin sy 51.5 1E+02 0.0022 23.3 7.4 57 300-361 19-81 (81)
241 PF14732 UAE_UbL: Ubiquitin/SU 51.4 28 0.0006 27.2 4.2 56 300-355 2-67 (87)
242 PRK06083 sulfur carrier protei 50.6 1.2E+02 0.0025 23.5 7.8 67 61-139 18-84 (84)
243 KOG3439 Protein conjugation fa 50.4 55 0.0012 26.7 5.7 52 129-186 30-81 (116)
244 PF04017 DUF366: Domain of unk 50.2 16 0.00036 32.4 3.0 82 102-189 7-116 (183)
245 PF02597 ThiS: ThiS family; I 50.0 97 0.0021 22.7 7.1 63 73-139 13-77 (77)
246 PRK11840 bifunctional sulfur c 49.9 53 0.0011 32.3 6.7 68 286-363 1-68 (326)
247 PF14451 Ub-Mut7C: Mut7-C ubiq 49.6 56 0.0012 25.1 5.6 65 58-133 8-74 (81)
248 KOG2982 Uncharacterized conser 49.6 21 0.00046 34.7 3.9 53 156-208 354-414 (418)
249 PRK07696 sulfur carrier protei 49.6 1E+02 0.0022 22.6 7.4 60 70-138 6-66 (67)
250 PF14451 Ub-Mut7C: Mut7-C ubiq 49.4 75 0.0016 24.4 6.3 53 295-356 22-75 (81)
251 PF00788 RA: Ras association ( 49.1 73 0.0016 24.3 6.5 33 297-329 18-52 (93)
252 cd06396 PB1_NBR1 The PB1 domai 48.4 55 0.0012 25.2 5.3 37 219-257 6-44 (81)
253 KOG3439 Protein conjugation fa 48.3 59 0.0013 26.5 5.6 52 285-336 30-85 (116)
254 smart00144 PI3K_rbd PI3-kinase 47.8 1.2E+02 0.0027 24.5 7.7 74 285-358 17-105 (108)
255 PF10209 DUF2340: Uncharacteri 47.5 37 0.0008 28.3 4.5 57 77-134 20-107 (122)
256 PRK15078 polysaccharide export 47.0 3.2E+02 0.0069 27.6 16.9 171 120-315 83-285 (379)
257 PTZ00380 microtubule-associate 46.4 79 0.0017 26.4 6.3 61 296-356 41-104 (121)
258 PTZ00380 microtubule-associate 42.8 74 0.0016 26.5 5.6 44 77-121 45-88 (121)
259 smart00144 PI3K_rbd PI3-kinase 42.8 1.2E+02 0.0025 24.6 6.9 60 149-208 28-101 (108)
260 PF02505 MCR_D: Methyl-coenzym 41.0 2E+02 0.0042 25.0 8.0 100 231-344 12-120 (153)
261 cd06410 PB1_UP2 Uncharacterize 41.0 1E+02 0.0022 24.6 6.0 35 290-324 17-51 (97)
262 PF00788 RA: Ras association ( 40.3 1.1E+02 0.0024 23.3 6.2 33 151-183 18-52 (93)
263 KOG4572 Predicted DNA-binding 40.1 60 0.0013 35.6 5.8 68 221-288 3-74 (1424)
264 PF10209 DUF2340: Uncharacteri 39.9 62 0.0014 26.9 4.7 54 3-56 22-107 (122)
265 smart00314 RA Ras association 39.7 1.2E+02 0.0026 23.3 6.3 35 294-328 14-50 (90)
266 PF14732 UAE_UbL: Ubiquitin/SU 39.2 59 0.0013 25.3 4.4 62 227-288 2-75 (87)
267 cd06410 PB1_UP2 Uncharacterize 39.0 1E+02 0.0022 24.6 5.7 40 66-107 17-56 (97)
268 cd01787 GRB7_RA RA (RAS-associ 38.6 1.2E+02 0.0027 23.6 5.9 42 287-328 4-45 (85)
269 PF11069 DUF2870: Protein of u 38.4 27 0.00058 27.8 2.3 31 104-136 3-33 (98)
270 cd02413 40S_S3_KH K homology R 37.8 1.1E+02 0.0024 23.4 5.6 52 204-255 21-72 (81)
271 cd06396 PB1_NBR1 The PB1 domai 37.3 98 0.0021 23.9 5.2 30 293-322 7-38 (81)
272 PF00794 PI3K_rbd: PI3-kinase 36.9 2.1E+02 0.0045 22.9 7.5 73 284-356 15-101 (106)
273 KOG4572 Predicted DNA-binding 36.2 47 0.001 36.4 4.3 63 294-356 3-69 (1424)
274 KOG2561 Adaptor protein NUB1, 36.0 28 0.00061 35.4 2.5 55 300-354 54-108 (568)
275 PF02824 TGS: TGS domain; Int 35.8 1.6E+02 0.0035 20.9 6.0 58 64-132 1-58 (60)
276 cd01775 CYR1_RA Ubiquitin doma 35.3 2.3E+02 0.005 22.6 7.0 36 220-255 10-46 (97)
277 cd01787 GRB7_RA RA (RAS-associ 34.3 1.6E+02 0.0035 22.9 6.0 40 64-104 5-44 (85)
278 PF02017 CIDE-N: CIDE-N domain 34.0 1.4E+02 0.0029 22.9 5.4 49 306-357 21-71 (78)
279 cd01768 RA RA (Ras-associating 33.2 1.3E+02 0.0029 22.8 5.6 37 148-184 11-49 (87)
280 TIGR02958 sec_mycoba_snm4 secr 33.1 1E+02 0.0022 31.9 6.2 67 214-281 4-77 (452)
281 KOG0007 Splicing factor 3a, su 32.8 19 0.00041 35.8 0.8 50 68-119 289-339 (341)
282 PF00794 PI3K_rbd: PI3-kinase 31.6 1.9E+02 0.0042 23.0 6.5 52 148-199 26-85 (106)
283 cd01611 GABARAP Ubiquitin doma 31.3 1.6E+02 0.0035 24.1 6.0 57 300-357 45-106 (112)
284 PF08825 E2_bind: E2 binding d 31.3 93 0.002 24.1 4.3 64 227-291 1-82 (84)
285 PF14847 Ras_bdg_2: Ras-bindin 30.9 1.9E+02 0.0041 23.4 6.2 36 288-323 3-38 (105)
286 PF09138 Urm1: Urm1 (Ubiquitin 30.2 35 0.00076 27.2 1.8 71 355-425 3-90 (96)
287 KOG0007 Splicing factor 3a, su 30.1 23 0.00049 35.2 0.8 51 292-342 289-340 (341)
288 PF09469 Cobl: Cordon-bleu ubi 29.9 24 0.00052 26.8 0.7 33 386-418 2-39 (79)
289 KOG1364 Predicted ubiquitin re 29.4 52 0.0011 32.4 3.1 65 287-351 279-349 (356)
290 TIGR03260 met_CoM_red_D methyl 29.0 3.8E+02 0.0083 23.2 7.9 99 232-344 12-118 (150)
291 PF02991 Atg8: Autophagy prote 28.2 1.1E+02 0.0024 24.7 4.4 44 300-343 37-81 (104)
292 PF02505 MCR_D: Methyl-coenzym 27.9 4E+02 0.0087 23.1 8.2 104 5-123 12-121 (153)
293 PRK11840 bifunctional sulfur c 27.7 2.4E+02 0.0052 27.8 7.3 63 70-141 6-68 (326)
294 cd01775 CYR1_RA Ubiquitin doma 27.6 3.2E+02 0.0069 21.8 6.7 36 293-328 10-46 (97)
295 cd06398 PB1_Joka2 The PB1 doma 27.1 3E+02 0.0066 21.6 6.6 38 294-331 8-51 (91)
296 PF14847 Ras_bdg_2: Ras-bindin 26.8 2E+02 0.0044 23.3 5.7 36 142-177 3-38 (105)
297 cd01764 Urm1 Urm1-like ubuitin 26.6 1.4E+02 0.003 23.5 4.7 55 371-425 22-88 (94)
298 COG0299 PurN Folate-dependent 26.4 1.3E+02 0.0028 27.4 4.8 48 121-174 126-174 (200)
299 KOG2689 Predicted ubiquitin re 26.1 1.8E+02 0.0038 27.9 5.9 72 60-132 209-284 (290)
300 smart00314 RA Ras association 24.9 2.4E+02 0.0052 21.5 5.8 37 147-183 13-51 (90)
301 cd06398 PB1_Joka2 The PB1 doma 24.6 3.4E+02 0.0073 21.3 6.5 43 64-108 3-51 (91)
302 cd01776 Rin1_RA Ubiquitin doma 23.8 1.3E+02 0.0029 23.2 3.8 39 1-39 18-61 (87)
303 cd01782 AF6_RA_repeat1 Ubiquit 23.4 3.6E+02 0.0078 22.0 6.3 40 283-322 21-62 (112)
304 PF00276 Ribosomal_L23: Riboso 22.5 2E+02 0.0044 22.5 4.8 41 296-336 21-62 (91)
305 cd01782 AF6_RA_repeat1 Ubiquit 22.1 4.4E+02 0.0096 21.5 7.3 45 212-256 23-74 (112)
306 PF02192 PI3K_p85B: PI3-kinase 22.1 1.1E+02 0.0025 23.3 3.2 21 225-245 2-22 (78)
307 cd01611 GABARAP Ubiquitin doma 21.8 1.4E+02 0.0031 24.4 4.0 45 77-121 45-89 (112)
308 PF06234 TmoB: Toluene-4-monoo 21.1 3.8E+02 0.0082 20.9 5.8 60 297-356 16-83 (85)
309 smart00266 CAD Domains present 21.0 2.8E+02 0.006 21.0 5.0 56 297-356 11-68 (74)
310 COG5100 NPL4 Nuclear pore prot 20.8 3.3E+02 0.0072 27.5 6.8 70 286-356 1-78 (571)
311 cd01612 APG12_C Ubiquitin-like 20.7 1.8E+02 0.004 22.6 4.2 57 299-356 19-80 (87)
312 PF02192 PI3K_p85B: PI3-kinase 20.2 1.4E+02 0.003 22.8 3.3 21 298-318 2-22 (78)
313 cd06397 PB1_UP1 Uncharacterize 20.1 4.2E+02 0.009 20.4 5.8 42 288-330 3-44 (82)
314 PF02017 CIDE-N: CIDE-N domain 20.1 2E+02 0.0042 22.0 4.1 37 233-269 21-59 (78)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.86 E-value=1.6e-21 Score=158.25 Aligned_cols=97 Identities=23% Similarity=0.321 Sum_probs=94.2
Q ss_pred cccCCCCCCCeEEEEEecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccc
Q 036691 41 LVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMT 120 (426)
Q Consensus 41 l~~y~i~~~~~l~l~~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~ 120 (426)
-..+++.+.+++|+++++++.|+|+||+..|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~-leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D-~~tL~ 84 (103)
T cd01802 7 PPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFE-LRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELED-EYCLN 84 (103)
T ss_pred CCccccCCcceeEEeeccCCCEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCC-CCcHH
Confidence 67889999999999999999999999999999999 99999999999999999999999999999999999999 99999
Q ss_pred ccccccCcEEEEEeeccce
Q 036691 121 SMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 121 ~y~I~~~s~i~l~~~~~~g 139 (426)
+|+|+++++||++++++||
T Consensus 85 dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 85 DYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred HcCCCCCCEEEEEEecCCC
Confidence 9999999999999998876
No 2
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.8e-23 Score=159.85 Aligned_cols=101 Identities=45% Similarity=0.624 Sum_probs=93.8
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcccC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIEL 365 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~~~ 365 (426)
|++++++++|+|++++++|++||.++|++|+++.|+|+++|+|+|+|++|+|++||++|||+..||||+++|++||..
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i-- 78 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII-- 78 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCCC--
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred CceeeccccCCCCCHHHHHHHHHHh----cCc
Q 036691 366 PLIFIDPSISLSISISEVKEMAKVK----FQA 393 (426)
Q Consensus 366 ~~~~~~~~~~~~~~v~~~k~~i~~~----~~~ 393 (426)
+++....+..++..+.||++ ++|
T Consensus 79 -----~~~~aalAmK~~~D~lICRkCYAR~g~ 105 (128)
T KOG0003|consen 79 -----EPSLAALAMKYNCDKLICRKCYARLGP 105 (128)
T ss_pred -----ChhHHHHHHHhccchHHHHHHHHhcCc
Confidence 56666677788888999998 555
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.82 E-value=1.1e-19 Score=147.48 Aligned_cols=92 Identities=26% Similarity=0.386 Sum_probs=85.3
Q ss_pred ccCCCCCccccc---CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCC
Q 036691 270 SYGIKNNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346 (426)
Q Consensus 270 ~y~I~~~~~l~l---~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I 346 (426)
.+++-+-+++++ ++..|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 345556666666 67789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeecCCC
Q 036691 347 QKHSTLHMVLAPSSR 361 (426)
Q Consensus 347 ~~~~ti~l~~~~~gg 361 (426)
+++++||++++++||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999987
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=1.8e-19 Score=138.17 Aligned_cols=74 Identities=24% Similarity=0.296 Sum_probs=71.7
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|+||+. ++++++|+|++||+++|++|++++|+|+++|+|+|+|++|+|++||++|||++++|||+++|++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 899999999999999999999999999999999999999999999999999999999999999987
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.78 E-value=8.1e-19 Score=134.51 Aligned_cols=73 Identities=27% Similarity=0.472 Sum_probs=71.4
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+++|++|||+++++||+++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999875
No 6
>PTZ00044 ubiquitin; Provisional
Probab=99.77 E-value=1.3e-18 Score=134.13 Aligned_cols=76 Identities=33% Similarity=0.524 Sum_probs=74.6
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|+|++.+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++||++++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999886
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.77 E-value=1.1e-18 Score=133.75 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=70.9
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|+|+||+ +++++ ++|++++||+++|++|++++|+|+++|+|+|+|++|+| +.+|++|+|++++++|+++|++||
T Consensus 1 mqi~vk~--~~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D-~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHT-LEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLED-DATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEE-EEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCC-CCCHHHcCCCCCCEEEEEEecCCC
Confidence 7899997 47888 99999999999999999999999999999999999999 999999999999999999999886
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.76 E-value=1.9e-18 Score=132.38 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=72.3
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|+++.|+++++++++++||++||++|+++.|+|+++|+|+|+|+.|+|++||++|||+++++|+|+++++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999886
No 9
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.75 E-value=3e-18 Score=131.33 Aligned_cols=73 Identities=21% Similarity=0.388 Sum_probs=70.9
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
|+|+||+.+|++++ ++|++++||++||++|++++|+|+++|+|+|+|++|+| +.+|++|+|++++++|+++++
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d-~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECS-LQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALAD-DKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCC-CCCHHHCCCCCCCEEEEEEcC
Confidence 78999999999999 99999999999999999999999999999999999999 999999999999999998874
No 10
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=9.8e-19 Score=146.97 Aligned_cols=78 Identities=49% Similarity=0.678 Sum_probs=76.5
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
|+|||+++.|+++++++.+++||.++|++|++++|||+++|||+|+|++|+|++||+||+|+..+|||++++++||..
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~k 78 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAK 78 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999966
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=7.2e-18 Score=130.01 Aligned_cols=76 Identities=29% Similarity=0.478 Sum_probs=73.8
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|+|+||+.+|++++ +++++++||+++|++|+++.|+|+++|+|+|+|+.|+| +.+|++|++++++++|+.++++||
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d-~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQS-FNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSD-DLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccC-CCcHHHcCCCCCCEEEEEEEccCC
Confidence 79999999999999 99999999999999999999999999999999999998 999999999999999999998875
No 12
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.73 E-value=1.1e-17 Score=129.17 Aligned_cols=74 Identities=22% Similarity=0.418 Sum_probs=70.7
Q ss_pred cEEEEEecCCcE-EEEE-EcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 286 FQIFVKTWGGKT-ITLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 286 m~i~v~~~~g~~-~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
|+|+|++.+|++ ++++ +.+++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||+++++|++++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6895 8999999999999999999999999999999999999999999999999999999864
No 13
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.9e-19 Score=139.28 Aligned_cols=76 Identities=42% Similarity=0.604 Sum_probs=74.5
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|++|+++++|+|++ ++|+|++||..+|++|++++|+|+++|+|+|+|++|+| +.|+++|||+..||||+++|++||
T Consensus 1 ~~~~~~~~~GKT~~-le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED-~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTIT-LEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEE-EEecccchHHHHHHHhccccCCCHHHHHHHhccccccc-CCcccccCccchhhhhhhHHHhcC
Confidence 68899999999999 99999999999999999999999999999999999999 999999999999999999999998
No 14
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.73 E-value=1.8e-17 Score=127.69 Aligned_cols=76 Identities=51% Similarity=0.742 Sum_probs=74.6
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|+|++.+|+++.+++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++||+++|++||++++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 15
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.73 E-value=2.3e-17 Score=127.11 Aligned_cols=76 Identities=32% Similarity=0.538 Sum_probs=74.4
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|+|++.+|+++.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.||++|+|++|++||++++.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999887
No 16
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.72 E-value=1.2e-17 Score=127.92 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=71.6
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|+||++.|++++ +++++++||+++|++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++++++++.++++||
T Consensus 1 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D-~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSI-YEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMED-EHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEE-EEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCC-CCCHHHcCCCCCCEEEEEEEccCC
Confidence 689999999999 99999999999999999999999999999999999999 999999999999999999998875
No 17
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.71 E-value=2.7e-17 Score=126.90 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=70.1
Q ss_pred eeEEEEcCCCce-eEEEE-EcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 62 MKLFVKIPTNQT-ATVVE-AMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 62 m~i~Vk~~~g~~-~~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
|+|+||+.+|++ ++ ++ +++++||.++|++|++++|+|+++|+|+|+|+.|+| +.+|++|||+++++|++.+|+.
T Consensus 1 M~I~vk~~~G~~~~~-l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D-~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRT-VDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMED-GHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEE-eeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCC-CCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 57 85 899999999999999999999999999999999999 9999999999999999988864
No 18
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.71 E-value=5e-17 Score=125.68 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=74.3
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
+|+|+|++..|+.++++++++.||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..+.+|.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 589999999999999999999999999999999999999999999999999999 99999999999999999998873
No 19
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.70 E-value=4.4e-17 Score=123.49 Aligned_cols=70 Identities=24% Similarity=0.452 Sum_probs=67.9
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
|+|++++|+++++++++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|||+++++||++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999865
No 20
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=7.2e-18 Score=141.75 Aligned_cols=78 Identities=40% Similarity=0.558 Sum_probs=75.7
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS 141 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~ 141 (426)
|+|||+++.|+++. +++.+++||..+|++|++++|||+++|||+|+|++|+| +++|+||+|+..+|||++++++||..
T Consensus 1 m~ifVk~l~~kti~-~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLed-grtlSDY~Iqkestl~l~l~l~Gg~k 78 (156)
T KOG0004|consen 1 MQIFVKTLTGKTIT-LEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGAK 78 (156)
T ss_pred Cccchhhcccccee-eeecccccHHHHHHhhhcccCCCchhhhhhhhhccccc-CCccccccccccceEEEEEEecCCcc
Confidence 78999999999999 99999999999999999999999999999999999999 99999999999999999999999853
No 21
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.69 E-value=7.8e-17 Score=122.47 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=69.2
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
.|.|+|++..|+.+.++++|++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 378999999999999999999999999999999999999999999999999999999999999999999963
No 22
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.69 E-value=8.5e-17 Score=123.92 Aligned_cols=76 Identities=42% Similarity=0.611 Sum_probs=73.9
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|+|+||+.+|+++. +++++++||++||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+++++++||+.++++||
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCC-CCcHHHcCCCCCCEEEEEEEccCC
Confidence 78999999999999 99999999999999999999999999999999999999 999999999999999999998876
No 23
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.69 E-value=1.1e-16 Score=123.34 Aligned_cols=76 Identities=29% Similarity=0.465 Sum_probs=73.6
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|+|+||+.+|+++. ++++++.||.+||++|+++.|+|++.|+|+|+|+.|+| +.+|++|++++|++||++++.+||
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d-~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-DKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccC-CCCHHHcCCCCCCEEEEEEEccCC
Confidence 78999999999999 99999999999999999999999999999999999999 999999999999999999998876
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.68 E-value=9.7e-17 Score=121.14 Aligned_cols=68 Identities=26% Similarity=0.300 Sum_probs=66.0
Q ss_pred EEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 289 FVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 289 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
.|+..+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++||+++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999986
No 25
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.3e-17 Score=113.30 Aligned_cols=70 Identities=34% Similarity=0.577 Sum_probs=68.1
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~ 355 (426)
|.|.|++++|+.+.++++|+|+|+.+|++++++.||||.+|||+|+|+++.|+.|-.+|++..||.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999984
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.4e-17 Score=113.26 Aligned_cols=70 Identities=33% Similarity=0.508 Sum_probs=67.8
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
|.|.||+++|+.+. ++++|+++|..+|++|++++|+||.+|||+|+|+++.| +.|-++|++.-||++|++
T Consensus 1 m~iKvktLt~KeIe-idIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~D-D~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMND-DKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEE-EeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccc-cccHHHhhhccceeEeeC
Confidence 67899999999999 99999999999999999999999999999999999999 999999999999999984
No 27
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.67 E-value=1.7e-16 Score=120.68 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=68.3
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
.|.|+|++..|+.+. ++++|++||++||++|+++.|+|+++|||+|+|+.|+| +.+|++|||++|++|||.
T Consensus 1 ~~~i~vkt~~Gk~~~-~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D-~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKD-HISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCC-CCCHHHcCCCCCCEEEEE
Confidence 378999999999999 99999999999999999999999999999999999999 999999999999999984
No 28
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.67 E-value=3.8e-16 Score=120.66 Aligned_cols=73 Identities=25% Similarity=0.452 Sum_probs=70.7
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCC--CCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQT--PLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
|+|+|++++|+++++++++++||++||++|++++|+ |+++|+|+|+|+.|+|+.+|++|||++|++|+++++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999998764
No 29
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.67 E-value=1.9e-16 Score=122.43 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=73.4
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL 140 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~ 140 (426)
.|+|+||+..|+.+. +++++++||++||++|+++.|+|+++|+|+|+|+.|+| + +|++|||++|++|+++..+++|.
T Consensus 1 ~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d-~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFD-LSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSS-G-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEE-EEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCC-C-cHHHcCCCCCCEEEEEeeccccC
Confidence 489999999999999 99999999999999999999999999999999999999 7 99999999999999999888764
No 30
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.66 E-value=1.9e-16 Score=120.04 Aligned_cols=70 Identities=27% Similarity=0.531 Sum_probs=67.3
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
|+||+..|++++ +++++++||+++|++|++++|+|+++|+|+|+|++|+| +.+|++|+|+++|++|++.|
T Consensus 1 i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d-~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFP-VEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRN-TTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEE-EEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCC-CCcHHHcCCCCCCEEEEEeC
Confidence 689999999999 99999999999999999999999999999999999999 99999999999999999754
No 31
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.66 E-value=4.9e-16 Score=118.36 Aligned_cols=72 Identities=29% Similarity=0.493 Sum_probs=69.9
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
|+|+|++++|+++++++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++||++.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 32
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.65 E-value=2.8e-16 Score=118.64 Aligned_cols=68 Identities=19% Similarity=0.394 Sum_probs=65.6
Q ss_pred EEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691 65 FVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 65 ~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~ 134 (426)
.||.++|++++ +++++++||+++|++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||+.+
T Consensus 2 ~vk~~~G~~~~-l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D-~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVK-LSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTD-KTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEE-EEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCC-CCCHHHcCCCCCCEEEEEe
Confidence 57899999999 99999999999999999999999999999999999999 9999999999999999865
No 33
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.64 E-value=5.8e-16 Score=119.21 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=68.1
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
++|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+|++||++|+|++|++||++++++||..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~~ 75 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGRK 75 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCcC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999853
No 34
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.64 E-value=8.4e-16 Score=116.77 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=67.6
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
|.|+|++.+|+ .+++++++.||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 589999999999999999999999999999999999999999999999999999999875
No 35
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.63 E-value=9.1e-16 Score=119.33 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=70.7
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE--EEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI--VFAGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
+|+|+|++..|+++++++++++||++||++|+++.|+|+++|+| +|+|+.|+|+.+|++|||++|++|+++++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 38899999999999999999999999999999999999999999 89999999999999999999999999987
No 36
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.63 E-value=1.4e-15 Score=114.93 Aligned_cols=69 Identities=39% Similarity=0.664 Sum_probs=66.3
Q ss_pred EecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 291 KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 291 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
|+.+|+++++++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.||++|||++|++|+|+.+.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 578999999999999999999999999999999999999999999999999999999999999998764
No 37
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.63 E-value=1.3e-15 Score=117.62 Aligned_cols=73 Identities=29% Similarity=0.472 Sum_probs=69.9
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCC--CCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGI--QSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
|+|+||+.+|+++. +++++++||.+||++|++++|+ |+++|+|+|+|+.|+| +.+|++|+|++|++|++.++.
T Consensus 1 m~i~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d-~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFP-IEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKD-DTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccC-CCCHHHcCCCCCCEEEEEEec
Confidence 79999999999999 9999999999999999999999 9999999999999999 899999999999999987653
No 38
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=1.4e-15 Score=115.81 Aligned_cols=72 Identities=31% Similarity=0.421 Sum_probs=69.2
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
|+|+||+++|++++ +++++++||.+||++|++..|+|++.|+|+|+|+.|+| +.+|++||+++|+++|++.|
T Consensus 1 i~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHT-FTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKD-DETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCC-cCcHHHCCCCCCCEEEEEeC
Confidence 78999999999999 99999999999999999999999999999999999999 99999999999999999654
No 39
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.61 E-value=3.9e-15 Score=117.57 Aligned_cols=79 Identities=10% Similarity=0.255 Sum_probs=76.5
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+..|+|+|++.+|+++.++|.+++|++.||.+++++.|+|+++|+|+|+|+.|+++.|+.+|++++|++|+++++++||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999987
No 40
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.61 E-value=1.8e-15 Score=114.73 Aligned_cols=68 Identities=25% Similarity=0.379 Sum_probs=64.5
Q ss_pred EEEEec-CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC-CccccCCCCCCCEEEEE
Q 036691 288 IFVKTW-GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVLARYNIQKHSTLHMV 355 (426)
Q Consensus 288 i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~-~tL~~y~I~~~~ti~l~ 355 (426)
|+|++. +|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||++|++||+.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 478999 999999999999999999999999999999999999999999987 68999999999999874
No 41
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.60 E-value=2.8e-15 Score=113.91 Aligned_cols=71 Identities=32% Similarity=0.512 Sum_probs=66.8
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
+.|+||+..|+ .. +++++++||++||++|++++|+|+++|+|+|+|+.|+| +.+|++||+++++++|+++|
T Consensus 1 ~~i~vk~~~g~-~~-l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d-~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EE-IEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKD-TDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EE-EEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCC-CCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 47 99999999999999999999999999999999999999 99999999999999999764
No 42
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.59 E-value=2.4e-15 Score=114.12 Aligned_cols=68 Identities=21% Similarity=0.413 Sum_probs=64.1
Q ss_pred EEEEcC-CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEE
Q 036691 64 LFVKIP-TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 64 i~Vk~~-~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l 132 (426)
|+||+. +|+++. +++++++||++||++|++++|+|+++|+|+|+|+.|+|+..+|++|+|++++++++
T Consensus 1 l~v~~~~~g~~~~-l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFS-LDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEE-EEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 578999 999999 99999999999999999999999999999999999998347899999999999997
No 43
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.59 E-value=2.7e-15 Score=116.65 Aligned_cols=73 Identities=23% Similarity=0.214 Sum_probs=70.2
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEE--EeCCeEeecccccccccccccCcEEEEEee
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTL--VYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L--~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
.|+|+||+..|+++. +++++++||++||++|+++.|+|+++|+| +|+|+.|+| +.+|++|||++|++|+++++
T Consensus 2 ~~~i~Vk~~~G~~~~-~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D-~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFL-VSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQD-GVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEE-EEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCC-CCCHHHcCCCCCCEEEEEEE
Confidence 489999999999999 99999999999999999999999999999 899999999 89999999999999999876
No 44
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.58 E-value=7.7e-15 Score=110.80 Aligned_cols=69 Identities=38% Similarity=0.560 Sum_probs=65.6
Q ss_pred EcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 67 KIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 67 k~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
|+++|+++. ++|++++||.+||++|+++.|+|++.|+|+|+|+.|+| +.+|++|+|+++++|++..+.+
T Consensus 1 k~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d-~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFT-LEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDD-DKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEE-EEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEEST-TSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEE-EEECCCCCHHHhhhhcccccccccccceeeeeeecccC-cCcHHHcCCCCCCEEEEEEecC
Confidence 678999999 99999999999999999999999999999999999988 9999999999999999988753
No 45
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.57 E-value=6.6e-15 Score=112.49 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=64.7
Q ss_pred CcEEEEEecCCcEE--EEEEcCCCcHHHHHHHHHhHhC--CCCcceEEEEcCeecCCCCccccCC--CCCCCEEEEEe
Q 036691 285 PFQIFVKTWGGKTI--TLDVQPYNTVQDVKVKLFDKLQ--TPLHLQSIVFAGKRLFENHVLARYN--IQKHSTLHMVL 356 (426)
Q Consensus 285 ~m~i~v~~~~g~~~--~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~gk~L~d~~tL~~y~--I~~~~ti~l~~ 356 (426)
++.++||+++|+++ ++++++++||++||++|+...+ .|+++|||||+||.|+|+.||++|. ++++.|||||+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 47899999999984 4555899999999999999875 5589999999999999999999996 99999999986
No 46
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.56 E-value=7.6e-15 Score=112.98 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=66.6
Q ss_pred CCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691 69 PTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL 140 (426)
Q Consensus 69 ~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~ 140 (426)
++|++++ +++++++||++||++|+...|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++++++||-
T Consensus 5 l~g~~~~-l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d-~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLN-FTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKD-SNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEE-EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCC-CCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4789999 99999999999999999999999999999999999999 9999999999999999999988763
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.54 E-value=3.7e-14 Score=111.98 Aligned_cols=80 Identities=10% Similarity=0.194 Sum_probs=76.8
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.+..|+|+|++.+|+.+. +.|.+++|+..||.+++++.|+|+++|+|+|+|+.|++ +.|+++|+++++++|+++++++
T Consensus 8 ~~~~i~I~v~~~~g~~~~-~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~-~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 8 ISEHINLKVKGQDGNEVF-FKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRD-NQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCCeEEEEEECCCCCEEE-EEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCC-CCCHHHcCCCCCCEEEEEEecc
Confidence 457899999999999999 99999999999999999999999999999999999999 9999999999999999999998
Q ss_pred ce
Q 036691 138 EI 139 (426)
Q Consensus 138 ~g 139 (426)
||
T Consensus 86 GG 87 (87)
T cd01763 86 GG 87 (87)
T ss_pred cC
Confidence 86
No 48
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.53 E-value=3.4e-14 Score=107.88 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=66.7
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
|.|+|++. |+++++++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57899996 99999999999999999999999999999999999999999999999999999999999874
No 49
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.51 E-value=3.7e-14 Score=108.35 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=63.7
Q ss_pred ceeEEEEcCCCceeE-EEEEcCCCcHHHHHHHHHHHhC--CCCCceEEEeCCeEeecccccccccc--cccCcEEEEEe
Q 036691 61 EMKLFVKIPTNQTAT-VVEAMPYHTVQNIKTMIQVKEG--IQSDQFTLVYDGKLLKEDTATMTSMN--IKSESIIHLVF 134 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~-~~~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~~tL~~y~--I~~~s~i~l~~ 134 (426)
.+.|+||+++|+.+. .+++++++||.+||++|++..+ .|+++|||||+|+.|.| +.+|++|. +.++.+|||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD-~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPD-HLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccc-hhhHHHHhhcccCCceEEEEe
Confidence 378999999999854 0455899999999999999874 56899999999999999 99999996 99999999963
No 50
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.49 E-value=1.1e-13 Score=105.67 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=65.2
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE---cCeecCCCCccccCCCCCCCEEEEEe
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF---AGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
|.|.|+. .|+++++++++++||++||++|++++|+|+++|+|+| +|+.|+|+.+|++|+|++|++|+|+.
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 4577775 7899999999999999999999999999999999996 99999999999999999999998873
No 51
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.48 E-value=8.4e-14 Score=105.69 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=65.8
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
|+|+||+. |+++. +++++++||++||++|++.+|+|+++|+|+|+|+.|.| +.+|++|+|++|++|+++
T Consensus 1 i~i~vk~~-g~~~~-i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d-~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHD-LSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDD-AETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEE-EEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCc-cCcHHHcCCCCCCEEEEe
Confidence 57899995 99998 99999999999999999999999999999999999999 999999999999999985
No 52
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.45 E-value=2.2e-13 Score=104.04 Aligned_cols=69 Identities=20% Similarity=0.375 Sum_probs=65.1
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe---CCeEeecccccccccccccCcEEEEE
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY---DGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
|.|.||. .|+++. +++++++||++||++|++++|+|+++|+|+| .|+.|.| +.+|++|+|++|+.|+|+
T Consensus 1 ~~i~vk~-~g~~~~-v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D-~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYS-VTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAED-DVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEE-EEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCC-CcCHHHcCCCCCCEEEEE
Confidence 5688898 899999 9999999999999999999999999999996 8999999 999999999999999984
No 53
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.40 E-value=8.3e-13 Score=97.78 Aligned_cols=64 Identities=39% Similarity=0.589 Sum_probs=61.5
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHS 350 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ 350 (426)
|+|+|++.+ +++.+++++++||++||++|+.++|+|++.|+|+|+|+.|.|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999998 7999999999999999999999999999999999999999999999999999885
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.40 E-value=8.8e-13 Score=100.78 Aligned_cols=65 Identities=26% Similarity=0.284 Sum_probs=59.4
Q ss_pred EecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecC-CCCccccCCCC-CCCEEEEEe
Q 036691 291 KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLF-ENHVLARYNIQ-KHSTLHMVL 356 (426)
Q Consensus 291 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~-d~~tL~~y~I~-~~~ti~l~~ 356 (426)
+...|.+++++++|++||++||++|+.++|+|+++|+| |+|+.|. |++||++||++ +|+++||.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34468999999999999999999999999999999999 9999995 77999999998 889999864
No 55
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.40 E-value=3.9e-13 Score=101.23 Aligned_cols=56 Identities=30% Similarity=0.496 Sum_probs=50.5
Q ss_pred EEcC-CCcHHHHHHHHHhHh--CCC-CcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 301 DVQP-YNTVQDVKVKLFDKL--QTP-LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 301 ~v~~-~~tV~~lK~~i~~~~--gip-~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
+|+| ++||++||++|+++. |+| +++|||+|+||.|+|++||++|||++|++|||+.
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 3454 679999999999995 575 9999999999999999999999999999999975
No 56
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.40 E-value=8.4e-13 Score=100.90 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=60.1
Q ss_pred EcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccc-cCcEEEEEe
Q 036691 67 KIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIK-SESIIHLVF 134 (426)
Q Consensus 67 k~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~-~~s~i~l~~ 134 (426)
|...|.+++ +++++++||++||++|++++|+|+++|+| |+|+.|.||+.+|++|+++ +|+++||.+
T Consensus 8 ~~~~~~t~~-l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIW-LTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 445788999 99999999999999999999999999999 9999997548999999999 889999853
No 57
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.37 E-value=4.7e-13 Score=100.83 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=48.8
Q ss_pred CCCcHHHHHHHHHHHh--CCC-CCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691 81 PYHTVQNIKTMIQVKE--GIQ-SDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 81 ~~~tV~~lK~~I~~~~--gip-~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~ 134 (426)
.++||.+||++|+++. |++ +++|||+|+|+.|+| ++||++|+|++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D-~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKD-DQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCC-CCcHHHcCCCCCCEEEEEe
Confidence 4789999999999994 675 999999999999999 9999999999999999964
No 58
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.35 E-value=2e-12 Score=95.68 Aligned_cols=64 Identities=36% Similarity=0.509 Sum_probs=60.8
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCc
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSES 128 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s 128 (426)
|+|+||+.+ +++. ++++++.||++||++|+++.|+|++.|+|+|+|+.|.| +.+|++|++++|+
T Consensus 1 ~~i~vk~~~-~~~~-~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d-~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTIT-LEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLED-DRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEE-EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCC-CCCHHHcCCcCCC
Confidence 689999988 7888 99999999999999999999999999999999999999 8999999999875
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=2.6e-12 Score=127.17 Aligned_cols=73 Identities=21% Similarity=0.427 Sum_probs=70.5
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhC---CCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQ---TPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
|+|+||++.|+++.++|++++||.+||++|+...| +|+++|+|+|+||.|+|+.+|++|+|+++++|++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 78999999999999999999999999999999998 99999999999999999999999999999999998764
No 60
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.33 E-value=1.4e-12 Score=104.93 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=68.6
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHH-----HHhCCC--CCceEEEeCCeEeecccccccccc------ccc
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQ-----VKEGIQ--SDQFTLVYDGKLLKEDTATMTSMN------IKS 126 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~-----~~~gip--~~~q~L~~~g~~L~d~~~tL~~y~------I~~ 126 (426)
+.+.|.+|..+|..+-|..+++++||++||++|+ +++|+| +++|+|||+|+.|+| ++||++|+ +..
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD-~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILEN-SKTVGECRSPVGDIAGG 81 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCC-CCcHHHhCCcccccCCC
Confidence 4567788888998887899999999999999999 555666 999999999999999 99999999 788
Q ss_pred CcEEEEEeecc
Q 036691 127 ESIIHLVFCPK 137 (426)
Q Consensus 127 ~s~i~l~~~~~ 137 (426)
..|+|+++|..
T Consensus 82 ~~TmHvvlr~~ 92 (113)
T cd01814 82 VITMHVVVQPP 92 (113)
T ss_pred ceEEEEEecCC
Confidence 89999999865
No 61
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.31 E-value=2.5e-12 Score=100.10 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=54.3
Q ss_pred CccCCCCCHHHHHHHHHHHhCCCcccceEEecCeeccCC-C-cccCCCCCCCeEEEEEecC
Q 036691 1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAG-R-LVDYGIRNNSTLHFLHQNL 59 (426)
Q Consensus 1 l~v~~~dtv~~~K~~i~~~~gi~~~~q~L~~~g~~L~d~-~-l~~y~i~~~~~l~l~~~~~ 59 (426)
|+|+|++||.+||..|++++++|+.+|+|+|+|+.|.|+ + |++|||.++|+|+|+++.|
T Consensus 19 L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 19 LLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred EEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 579999999999999999999999999999999999654 4 9999999999999998643
No 62
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.29 E-value=4.3e-12 Score=102.04 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=66.9
Q ss_pred CCcEEEEEecCCc-EEEEEEcCCCcHHHHHHHHH-----hHhCCC--CcceEEEEcCeecCCCCccccCC------CCCC
Q 036691 284 SPFQIFVKTWGGK-TITLDVQPYNTVQDVKVKLF-----DKLQTP--LHLQSIVFAGKRLFENHVLARYN------IQKH 349 (426)
Q Consensus 284 ~~m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~L~~~gk~L~d~~tL~~y~------I~~~ 349 (426)
..+.|.++..+|. .=.+.+++++||++||++|+ +++|+| +++|+|||+||.|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 3466788888884 44788899999999999999 555666 99999999999999999999999 8888
Q ss_pred CEEEEEeecCCC
Q 036691 350 STLHMVLAPSSR 361 (426)
Q Consensus 350 ~ti~l~~~~~gg 361 (426)
.|+|+++|....
T Consensus 83 ~TmHvvlr~~~~ 94 (113)
T cd01814 83 ITMHVVVQPPLA 94 (113)
T ss_pred eEEEEEecCCCC
Confidence 999999986543
No 63
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=8.2e-12 Score=123.71 Aligned_cols=72 Identities=26% Similarity=0.446 Sum_probs=69.0
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhC---CCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG---IQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
|+|+||++.|+++. ++|++++||.+||++|++..| +|+++|+|+|+|+.|+| +.+|++|+|+++++|++++.
T Consensus 1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~D-d~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSD-DKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCC-CCcHHHcCCCCCCEEEEEec
Confidence 79999999999999 999999999999999999998 99999999999999999 99999999999999988665
No 64
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.23 E-value=1.9e-11 Score=95.21 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=58.7
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 73 TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
..+ ++|++++||.+||.+|.+++++||.+|+|+|+|+.|.||.+||++|||..+|+|+|.++.
T Consensus 16 ~~~-L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKA-LLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred Cce-EEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 345 889999999999999999999999999999999999998999999999999999997653
No 65
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.20 E-value=7.6e-11 Score=88.51 Aligned_cols=67 Identities=45% Similarity=0.654 Sum_probs=63.7
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 290 VKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 290 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
|+..+|+.+.+++.++.||++||++|+..+|+|++.|+|+|+|+.|+|+.+|.+|++.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999998864
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.14 E-value=1.6e-10 Score=87.91 Aligned_cols=71 Identities=28% Similarity=0.429 Sum_probs=66.0
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC-cceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPL-HLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
|+|+|++.+|+.+.+.|.+++++..|++..+++.|+|+ +.++|+|+|+.|.++.|+++||+++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 67999999999999999999999999999999999999 999999999999999999999999999999863
No 67
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.14 E-value=6.3e-11 Score=117.49 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=70.8
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS 360 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g 360 (426)
.+.|.||+.++ .+.+.|..+.||.+||+.|....++|+++++|||+||.|+|+.||..|||++|.|||||.+...
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~ 89 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQP 89 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCC
Confidence 47799999887 8999999999999999999999999999999999999999999999999999999999998653
No 68
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.09 E-value=2.9e-10 Score=85.32 Aligned_cols=66 Identities=39% Similarity=0.605 Sum_probs=62.4
Q ss_pred EEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 66 VKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 66 Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
|+..+|+.+. +.++++.||.+||++|++..|+|++.|+|+|+|+.|+| ..+|++|++.++++|++.
T Consensus 2 v~~~~~~~~~-~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d-~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFE-LEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKD-DKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCC-cCCHHHCCCCCCCEEEEE
Confidence 6777899999 99999999999999999999999999999999999998 999999999999999974
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.07 E-value=1.6e-10 Score=114.65 Aligned_cols=75 Identities=28% Similarity=0.496 Sum_probs=70.3
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
..++|.||+.++ .+. +.|..+.||.+||+.|....+.|+++++|||+||.|.| +.||..|||++|.||||+.+..
T Consensus 14 ~~irV~Vkt~~d-k~~-~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD-~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYE-VNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKD-DDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCc-cee-EecccchHHHHHHHHHHHhcCCChhHeeeeecCccccC-hhhHHHcCCCCCcEEEEEeccC
Confidence 468999999888 677 99999999999999999999999999999999999999 9999999999999999988754
No 70
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.05 E-value=1.2e-09 Score=82.39 Aligned_cols=73 Identities=51% Similarity=0.725 Sum_probs=69.4
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS 360 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g 360 (426)
+++.+..|+++.+++.+.++|+.+|.+|+...|+|.+.|++.++|+.|+|+.++.+|+|.+++++++..++++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 5778889999999999999999999999999999999999999999999999999999999999999988763
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.05 E-value=3.5e-10 Score=106.79 Aligned_cols=74 Identities=26% Similarity=0.458 Sum_probs=70.9
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhC--CCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQ--TPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
|.|+||++.|.+|++++.|++||.++|++|+...| .|+.+|.|||+||.|.|+.|+.+|+|+.++.|.+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999998888655
No 72
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=99.05 E-value=2.5e-10 Score=83.85 Aligned_cols=59 Identities=29% Similarity=0.513 Sum_probs=51.5
Q ss_pred CccCCCCCHHHHHHHHHHHhCCCcccceEEec---Cee-c-cCCC-cccCCCCCCCeEEEEEecCC
Q 036691 1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFA---GDR-L-EAGR-LVDYGIRNNSTLHFLHQNLS 60 (426)
Q Consensus 1 l~v~~~dtv~~~K~~i~~~~gi~~~~q~L~~~---g~~-L-~d~~-l~~y~i~~~~~l~l~~~~~~ 60 (426)
++|+|+.+|++||++|++.+|++. +|||.|+ |++ | .+++ ||+|||+++..|.|+.+.+.
T Consensus 15 l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p~ 79 (80)
T cd01811 15 LRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFPP 79 (80)
T ss_pred EEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCCC
Confidence 479999999999999999999999 6999995 554 4 5556 99999999999999988754
No 73
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.03 E-value=1.3e-09 Score=82.74 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=65.4
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCC-CceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQS-DQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
|+|+|+..+|+.+. +.|.+++++..|++..+++.|+|+ +..+|+|.|+.|++ +.|+++|++++|++|++.
T Consensus 1 I~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~-~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDP-NDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEE-EEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-T-TSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCC-CCCHHHCCCCCCCEEEEE
Confidence 68999999999999 999999999999999999999999 99999999999999 999999999999999975
No 74
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.93 E-value=1.6e-09 Score=102.45 Aligned_cols=72 Identities=35% Similarity=0.540 Sum_probs=68.2
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhC--CCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG--IQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
|.|+||++.|.+++ +++.|++||.++|++|+...| +|+.+|+|||+|+.|.| +.++.+|++..++.|.+.+.
T Consensus 1 m~lt~KtL~q~~F~-iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D-~~tv~Eykv~E~~fiVvMls 74 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFT-IEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKD-ETTVGEYKVKEKKFIVVMLS 74 (340)
T ss_pred CeeEeeeccCceeE-eecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccC-CcchhhhccccCceEEEEEe
Confidence 78999999999999 999999999999999999999 99999999999999999 99999999999888876554
No 75
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.93 E-value=5.5e-09 Score=78.76 Aligned_cols=72 Identities=38% Similarity=0.579 Sum_probs=68.3
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
+++++..|+++. +++.++.+|..+|.+|+.+.|+|+++|++.|.|+.|+| +.++.+|+|..++++++..+++
T Consensus 2 ~~~~~~~gk~~~-~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d-~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTIT-LEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLED-GRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEE-EEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcC-CCcHHHhCCCCCCEEEEEEecC
Confidence 577888999999 99999999999999999999999999999999999999 8999999999999999988765
No 76
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.88 E-value=1.1e-08 Score=80.03 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=57.9
Q ss_pred eEEEEcCC-CceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE-eCCe-----EeecccccccccccccCcEEEEE
Q 036691 63 KLFVKIPT-NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV-YDGK-----LLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 63 ~i~Vk~~~-g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g~-----~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
.|+|+... ..... ..++++.||.+||++++...|+||+.|+|. |.|+ .|.+|..+|++|++++|.+||++
T Consensus 3 ~v~i~~~~~~~~~e-kr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFE-KKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeee-EecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45555533 33344 669999999999999999999999999994 8888 67666999999999999999984
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.84 E-value=1.9e-08 Score=78.79 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=57.8
Q ss_pred EEEEEec-CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE-EEcCe-----ec-CCCCccccCCCCCCCEEEEE
Q 036691 287 QIFVKTW-GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI-VFAGK-----RL-FENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 287 ~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L-~~~gk-----~L-~d~~tL~~y~I~~~~ti~l~ 355 (426)
.++|... +....+.+++++.||++||++++..+|+|+..|+| +|.|+ .| +|+.+|++||+++|++||++
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 4555543 23445566999999999999999999999999999 58888 46 67889999999999999986
No 78
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.78 E-value=2.3e-08 Score=80.20 Aligned_cols=99 Identities=16% Similarity=0.289 Sum_probs=74.9
Q ss_pred ceeEEEcCCCcE-EEEeecccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCcccccCCCCcEEEEE
Q 036691 213 IQIFVRTPIEEI-VRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVK 291 (426)
Q Consensus 213 ~~i~V~~~~g~~-~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~m~i~v~ 291 (426)
|.+|+..+..++ +.+++.+++||.+||++|+.....||++|+|+..+..|+|++||++||+.+...-.-.+..+-+.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 456666555554 8899999999999999999999999999999977788999999999999543322223444556777
Q ss_pred ecCCcEEEEEEcCCCcHHHH
Q 036691 292 TWGGKTITLDVQPYNTVQDV 311 (426)
Q Consensus 292 ~~~g~~~~l~v~~~~tV~~l 311 (426)
..+|.--.+++.|..+--+|
T Consensus 81 ~~d~~fE~l~I~p~S~pp~l 100 (119)
T cd01788 81 SSDDTFEPLRIEPFSSPPEL 100 (119)
T ss_pred cCCCCccceeeeeCCCCCCc
Confidence 66666666777776654433
No 79
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.73 E-value=3.1e-08 Score=72.95 Aligned_cols=68 Identities=29% Similarity=0.305 Sum_probs=61.3
Q ss_pred ceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEec--C---eecCCCccccccCCCCCccccc
Q 036691 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYA--G---TKLEACKTLASYGIKNNYVLDV 281 (426)
Q Consensus 213 ~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~--g---~~L~d~~tL~~y~I~~~~~l~l 281 (426)
++|+|+.+++..+++.|+|..+|..+|++|+...|++ ..|+|.|. | +.|.+.++||+|||.....|.|
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~l 73 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICL 73 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEE
Confidence 4799999999999999999999999999999999998 49999985 2 4469999999999998888776
No 80
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.62 E-value=1.7e-07 Score=73.89 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=55.7
Q ss_pred EEEEEecCC--cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc----C---eec-CCCCccccCCCCCCCEEEEE
Q 036691 287 QIFVKTWGG--KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA----G---KRL-FENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 287 ~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g---k~L-~d~~tL~~y~I~~~~ti~l~ 355 (426)
.|+|....- ...+.+++++.||++||.+|+..+|+|++.|+|.+. + ..+ +|.++|++||+++|++||+.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 455655443 488899999999999999999999999999999776 1 223 56889999999999999985
No 81
>PLN02560 enoyl-CoA reductase
Probab=98.60 E-value=1.2e-07 Score=92.04 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=62.2
Q ss_pred cEEEEEecCCcEE---EEEEcCCCcHHHHHHHHHhHhCC-CCcceEEEEc---C----eecCCCCccccCCCCCCCEEEE
Q 036691 286 FQIFVKTWGGKTI---TLDVQPYNTVQDVKVKLFDKLQT-PLHLQSIVFA---G----KRLFENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 286 m~i~v~~~~g~~~---~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~L~~~---g----k~L~d~~tL~~y~I~~~~ti~l 354 (426)
|.|.|+..+|+.+ +++++++.||++||++|+++.++ ++++|||.+. | +.|+|+.+|++||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6789998889887 79999999999999999999986 8999999983 3 4889999999999999999766
No 82
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.60 E-value=1.3e-07 Score=75.85 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=61.7
Q ss_pred eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccccc-------ccCcEEEEEee
Q 036691 63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI-------KSESIIHLVFC 135 (426)
Q Consensus 63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I-------~~~s~i~l~~~ 135 (426)
.+|+.....++..++++.++.||.+||++|+.-...||++|+|+-.+..|+| ++||+|||+ ++.+++-|.+|
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD-~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDD-GKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecc-cccHHHcCccccccccCCCCeEEEEEe
Confidence 3444443444444499999999999999999999999999999977778888 999999999 77888888887
Q ss_pred ccce
Q 036691 136 PKEI 139 (426)
Q Consensus 136 ~~~g 139 (426)
..+|
T Consensus 81 ~~d~ 84 (119)
T cd01788 81 SSDD 84 (119)
T ss_pred cCCC
Confidence 5433
No 83
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.59 E-value=4.1e-07 Score=74.70 Aligned_cols=76 Identities=20% Similarity=0.384 Sum_probs=57.8
Q ss_pred cEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHh-------CCCCcceEEEEcCeecCCCCccccCCCCCCC------E
Q 036691 286 FQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKL-------QTPLHLQSIVFAGKRLFENHVLARYNIQKHS------T 351 (426)
Q Consensus 286 m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~-------gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~------t 351 (426)
+.+.++..+|. +..+.+++++||++||+.|.+.. -..+...||||.||.|+|+.||++|++..++ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 45667777998 88999999999999999999764 2345688999999999999999999998776 6
Q ss_pred EEEEeecCCC
Q 036691 352 LHMVLAPSSR 361 (426)
Q Consensus 352 i~l~~~~~gg 361 (426)
+||+++....
T Consensus 83 mHlvvrp~~~ 92 (111)
T PF13881_consen 83 MHLVVRPNAP 92 (111)
T ss_dssp EEEEE-SSSS
T ss_pred EEEEecCCCC
Confidence 7888875433
No 84
>PLN02560 enoyl-CoA reductase
Probab=98.53 E-value=1.9e-07 Score=90.59 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=61.7
Q ss_pred eeEEEEcCCCcee---EEEEEcCCCcHHHHHHHHHHHhCC-CCCceEEEeC---C----eEeecccccccccccccCcEE
Q 036691 62 MKLFVKIPTNQTA---TVVEAMPYHTVQNIKTMIQVKEGI-QSDQFTLVYD---G----KLLKEDTATMTSMNIKSESII 130 (426)
Q Consensus 62 m~i~Vk~~~g~~~---~~~~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~~~---g----~~L~d~~~tL~~y~I~~~s~i 130 (426)
|+|.|+..+|+.+ + ++++++.||++||++|+++.++ ++++|||.+. | +.|.| +.+|++||+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~-lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d-~ktL~d~gv~~gstL 78 (308)
T PLN02560 1 MKVTVVSRSGREIIKGG-LEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDD-SKSLKDYGLGDGGTV 78 (308)
T ss_pred CEEEEEcCCCCeeccee-EEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCC-CCCHHhcCCCCCceE
Confidence 6789998889987 6 9999999999999999999986 8999999983 4 37888 899999999999998
Q ss_pred EE
Q 036691 131 HL 132 (426)
Q Consensus 131 ~l 132 (426)
++
T Consensus 79 y~ 80 (308)
T PLN02560 79 VF 80 (308)
T ss_pred EE
Confidence 86
No 85
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.52 E-value=7.3e-07 Score=73.21 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=55.5
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhC-------CCCCceEEEeCCeEeecccccccccccccCc-----
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG-------IQSDQFTLVYDGKLLKEDTATMTSMNIKSES----- 128 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~g-------ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s----- 128 (426)
.+.|.++..+|..+.++..++++||++||+.|...+- ..++..||||.|+.|+| +.+|+++.+..++
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d-~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILED-NKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-S-SSBTGGGT--TTSETT--
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCC-cCcHHHhCCCCCCCCCCC
Confidence 3556667778994444999999999999999997642 13668999999999999 9999999988766
Q ss_pred -EEEEEeecc
Q 036691 129 -IIHLVFCPK 137 (426)
Q Consensus 129 -~i~l~~~~~ 137 (426)
++||+++..
T Consensus 81 ~vmHlvvrp~ 90 (111)
T PF13881_consen 81 TVMHLVVRPN 90 (111)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEecCC
Confidence 678877654
No 86
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.51 E-value=6.2e-07 Score=70.71 Aligned_cols=70 Identities=27% Similarity=0.364 Sum_probs=55.8
Q ss_pred eEEEEcCCC--ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC----C---eEeecccccccccccccCcEEEEE
Q 036691 63 KLFVKIPTN--QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD----G---KLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 63 ~i~Vk~~~g--~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g---~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
.|+|..... .... ..++++.||.+||.+++...|+|++.|+|.+. + ..+.||..+|.+|++++|.+||+.
T Consensus 3 ~l~It~~~~~~~~~e-kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVE-KRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEE-EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEE-EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 455555433 4666 89999999999999999999999999999875 1 245666899999999999999974
No 87
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.4e-07 Score=99.06 Aligned_cols=72 Identities=26% Similarity=0.429 Sum_probs=69.3
Q ss_pred eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.|.|||++.++.+ +.|...+||.+||..|.++..|+.+.|||||+|+.|.| ++++.+|+| +|-+|||+-|..
T Consensus 4 ~v~vktld~r~~t-~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~-~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRT-FIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQD-DKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeE-EEechHHHHHHHHHHHHHhcccccccceeeecceeecc-chhhhhccC-CCeEEEeeccCC
Confidence 4899999999999 99999999999999999999999999999999999999 999999999 999999998864
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=6.2e-07 Score=95.96 Aligned_cols=72 Identities=22% Similarity=0.436 Sum_probs=69.0
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
.+.|||++.++.++.+...+||.++|..|+++..|+.+.|||||.|+.|.|++++.+|+| +|-+|||+=|..
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 488999999999999999999999999999999999999999999999999999999999 999999998743
No 89
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.28 E-value=2.3e-06 Score=65.81 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=47.2
Q ss_pred cCCCcHHHHHHHHHhHhC-CCCcceEE--EEcCeecCCCCccccCCCCCCCEEEE
Q 036691 303 QPYNTVQDVKVKLFDKLQ-TPLHLQSI--VFAGKRLFENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 303 ~~~~tV~~lK~~i~~~~g-ip~~~q~L--~~~gk~L~d~~tL~~y~I~~~~ti~l 354 (426)
.++.||++||..|+...+ +++++||| .+.|+.|.|+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 488899999999999876 58999998 48999999999999999999999876
No 90
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.24 E-value=6.4e-06 Score=59.15 Aligned_cols=65 Identities=35% Similarity=0.399 Sum_probs=60.3
Q ss_pred ecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 292 TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 292 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
..+|....+.+.+..|++++++.++.+.|++++.|.|+++|..+.+...+.+|++..++++++..
T Consensus 4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34688899999999999999999999999999999999999999999988999999999998864
No 91
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.21 E-value=3.3e-06 Score=65.23 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=44.4
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC---eec--CCCCccccCCCCCCCEEEEE
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG---KRL--FENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g---k~L--~d~~tL~~y~I~~~~ti~l~ 355 (426)
..|.|.|++.+ .+..++++|++|+.+|+++|++..++|.+.|.|..+. ..+ .++.||+++||+.||.|+|.
T Consensus 3 ~~milRvrS~d-G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKD-GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SS-EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCC-CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 46889999987 4577899999999999999999999999999885432 345 46889999999999999873
No 92
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.18 E-value=4e-06 Score=64.48 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=46.9
Q ss_pred cCCCcHHHHHHHHHHHhC-CCCCceEEE--eCCeEeecccccccccccccCcEEEE
Q 036691 80 MPYHTVQNIKTMIQVKEG-IQSDQFTLV--YDGKLLKEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 80 ~~~~tV~~lK~~I~~~~g-ip~~~q~L~--~~g~~L~d~~~tL~~y~I~~~s~i~l 132 (426)
+++.||.+||..|++..+ +++++|||. +.|+.|.| +.+|++||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d-~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKD-DDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCC-cccHhhcCCCCCCEEEE
Confidence 478899999999999876 589999995 88999999 88999999999999886
No 93
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.15 E-value=3.3e-06 Score=65.23 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=44.2
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC---CeEe-ecccccccccccccCcEEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD---GKLL-KEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~---g~~L-~d~~~tL~~y~I~~~s~i~l 132 (426)
++|-|.|++.+| +.. +++++++|+.+|+++|++..++|.+.|.|..+ ...+ .+++.+|+++||+.|+.++|
T Consensus 3 ~~milRvrS~dG-~~R-ie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKR-IEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSE-EEE-EEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCC-CEE-EEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 578899999777 566 89999999999999999999999999988542 2245 23488999999999999987
No 94
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=8.1e-06 Score=76.70 Aligned_cols=73 Identities=18% Similarity=0.383 Sum_probs=63.7
Q ss_pred cEEEEEec---CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE-eec
Q 036691 286 FQIFVKTW---GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV-LAP 358 (426)
Q Consensus 286 m~i~v~~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~-~~~ 358 (426)
|.++|+.- ....++++|+.+.+|.+||+.++.+.|+|+++.+++|+||+|.++-|+..+.+...+.+|++ +|.
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 45666653 22567889999999999999999999999999999999999999999999999999999988 454
No 95
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.8e-06 Score=61.69 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=63.4
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~ 355 (426)
++.+.+.-|+...+.+.++|||+++|+.|++++|-.++...|--.+..++|.-+|++|.|..|..+.|.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 566777789999999999999999999999999999999999888899999999999999999888764
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.03 E-value=2.1e-05 Score=56.29 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=57.9
Q ss_pred cCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 68 IPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 68 ~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
..+|.... +.+.++.|+.++|+++.++.|++++.+.|+++|..+.+ ...+.+|++.+++++++.
T Consensus 4 ~~~~~~~~-~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 4 LNDGKTVE-LLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPD-SLTLEDYGLQDGDELVLV 67 (69)
T ss_pred ecCCCEEE-EEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCC-CCcHHHcCCCCCCEEEEE
Confidence 33677787 89999999999999999999999999999999999998 777789999999999974
No 97
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.5e-06 Score=62.13 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=63.3
Q ss_pred ceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCccccc
Q 036691 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV 281 (426)
Q Consensus 213 ~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l 281 (426)
+.+.++.+-|+...+...+++||.++|+.|..++|-.+++..|..+...+.|.-+|++|.|.+|..+.+
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 456778888999999999999999999999999999999999988889999999999999999987764
No 98
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00011 Score=57.88 Aligned_cols=79 Identities=13% Similarity=0.278 Sum_probs=73.8
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
..+++.|+.-++.+..+.|..+.+...|+..-+++.|++....|++|+|+.+.+..|-.+.+.+.|+.|.++....||.
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 4567888887788889999999999999999999999999999999999999999999999999999999999888885
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.7e-05 Score=74.56 Aligned_cols=70 Identities=20% Similarity=0.449 Sum_probs=60.9
Q ss_pred eeEEEEcC---CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 62 MKLFVKIP---TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~---~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
|.++|++. ....++ ++|+.+.+|.+||+-++.+.|+|+++.+++|+|++|.+ +.+++.+.+..-|.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~-v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~-~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLP-VEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSN-DTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCcee-EEEecCCCHHHHHHHHHHhhCCChhheEEEEecccccc-Cceeecccccccchhhhh
Confidence 44555553 344677 99999999999999999999999999999999999999 999999999888999875
No 100
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.56 E-value=0.0003 Score=51.85 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=47.7
Q ss_pred ecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEE
Q 036691 292 TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 292 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l 354 (426)
..+++.+++.+.|+.++.++-+..+.+.|+.+++..|.|+++.|+-+.++.-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 457899999999999999999999999999999999999999999999999999999999875
No 101
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00028 Score=70.39 Aligned_cols=74 Identities=23% Similarity=0.346 Sum_probs=66.2
Q ss_pred cEEEEEecCCcEEEEE-EcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691 286 FQIFVKTWGGKTITLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS 360 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g 360 (426)
..+.|+ |.|+.+.++ ++.++|+..+|+++...+|+||+.|++...|+.+.|+-.+...+|++|.+++|+.....
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~ 78 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEA 78 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccccc
Confidence 345565 578999988 99999999999999999999999999999999999999999999999999999875443
No 102
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00039 Score=69.45 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=64.6
Q ss_pred eeEEEEcCCCceeEEEE-EcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 62 MKLFVKIPTNQTATVVE-AMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
..|.||. .|+.+. ++ ++.++|+..+|+++...+|+||++|++++.|..+.| +-.+...+|++|.+++|.-..
T Consensus 4 ~~v~VKW-~gk~y~-v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~d-d~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 4 DTVIVKW-GGKKYP-VETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKD-DVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred ceEeeee-cCcccc-ceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccc-cccccccccCCCCEEEeeccc
Confidence 3578888 788888 66 999999999999999999999999999999999999 778888999999999996653
No 103
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.31 E-value=0.0013 Score=57.13 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=61.5
Q ss_pred cEEEEEecCC----cEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEE-cCeec--CCCCccccCCCCCC----CEEE
Q 036691 286 FQIFVKTWGG----KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVF-AGKRL--FENHVLARYNIQKH----STLH 353 (426)
Q Consensus 286 m~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~-~gk~L--~d~~tL~~y~I~~~----~ti~ 353 (426)
|+|+|.+++| .++.+.+.++.||.+|+..|.+..++|...| .|.+ .++.| .++..++.+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 6889999999999999999999999999985 4555 45566 45566676654443 4788
Q ss_pred EEeecCCCc
Q 036691 354 MVLAPSSRI 362 (426)
Q Consensus 354 l~~~~~gg~ 362 (426)
+.+++.||-
T Consensus 81 l~~rl~GGK 89 (162)
T PF13019_consen 81 LSLRLRGGK 89 (162)
T ss_pred EEEeccCCC
Confidence 899999883
No 104
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.29 E-value=0.00097 Score=49.16 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=47.9
Q ss_pred cccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeee
Q 036691 146 AATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEM 208 (426)
Q Consensus 146 ~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l 208 (426)
.++++++++.+.++.++.++-+...+++|++++.+.|.++++.++-+.+++.-++.+|+.++|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999875
No 105
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.14 E-value=0.00063 Score=52.87 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=51.7
Q ss_pred eEEEcC-CCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEe-cC-eecCCCccccccCCCCCc
Q 036691 215 IFVRTP-IEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFY-AG-TKLEACKTLASYGIKNNY 277 (426)
Q Consensus 215 i~V~~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g-~~L~d~~tL~~y~I~~~~ 277 (426)
+|+... ...++.++.+++.||.+||.++.....-|++.|+|+. .. +.|+|.+||++.|..+..
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ 68 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQT 68 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccc
Confidence 444433 3445789999999999999999999999999999986 44 667999999999886543
No 106
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.07 E-value=0.0015 Score=50.83 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=48.7
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE-cC-eecCCCCccccCCC
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF-AG-KRLFENHVLARYNI 346 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~g-k~L~d~~tL~~y~I 346 (426)
+.|+- ...++.+++.++.||-+||.+++....-|+++|+|+- .- ..|+|++||++||.
T Consensus 5 ~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 5 LRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred eeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 44544 3456778999999999999999999999999999976 44 67899999999954
No 107
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0049 Score=48.74 Aligned_cols=80 Identities=14% Similarity=0.229 Sum_probs=70.5
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+..+.+.|+.-+|.+.. +.|..+.+...|+..-.++.|++.+..|.+|.|+.+.. ..|-.+.+..+|+.|.++....|
T Consensus 18 ~~hi~LKV~gqd~~~~~-Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~-~~TP~~L~mEd~D~Iev~~~q~g 95 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVV-FKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRE-THTPADLEMEDGDEIEVVQEQTG 95 (99)
T ss_pred cceEEEEEecCCCCEEE-EEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCC-CCChhhhCCcCCcEEEEEeeccc
Confidence 34566777775677777 99999999999999999999999999999999999999 99999999999999999777666
Q ss_pred ee
Q 036691 139 IL 140 (426)
Q Consensus 139 g~ 140 (426)
|.
T Consensus 96 G~ 97 (99)
T KOG1769|consen 96 GF 97 (99)
T ss_pred CC
Confidence 53
No 108
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.83 E-value=0.0033 Score=48.41 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=49.3
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcc------eEEE-EcCeecCCCCccccCCCCCCCEEEE
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHL------QSIV-FAGKRLFENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~------q~L~-~~gk~L~d~~tL~~y~I~~~~ti~l 354 (426)
.|.|...+|+.+.+.+..+.+|++|...+.+..+.+... ..|. -+|..|.++.||+++||.+|+.++|
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 466666557899999999999999999999988764433 4555 6799999999999999999999986
No 109
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.78 E-value=0.011 Score=45.77 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=60.3
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcc-eEEE--EcCeecCCC--CccccCCCCCCCEEEE
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHL-QSIV--FAGKRLFEN--HVLARYNIQKHSTLHM 354 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~--~~gk~L~d~--~tL~~y~I~~~~ti~l 354 (426)
...|.|+.++|+.+.-.+.+++||.+|..-|......+... ..|+ |-.+.+.+. .||.+.|+.++++|++
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 45789999999999999999999999999999988777765 7775 567888654 6999999999999976
No 110
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.72 E-value=0.0073 Score=52.53 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=59.0
Q ss_pred eeEEEEcCCC----ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCce-EEEe-CCeEee-cccccccccccccC----cEE
Q 036691 62 MKLFVKIPTN----QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQF-TLVY-DGKLLK-EDTATMTSMNIKSE----SII 130 (426)
Q Consensus 62 m~i~Vk~~~g----~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q-~L~~-~g~~L~-d~~~tL~~y~I~~~----s~i 130 (426)
|+|+|++++| .++. +.++++.||.+|+..|.+..++|+..| .|.+ .|+.|. +++..++.+.-.+. -++
T Consensus 1 i~Vlvss~~g~~lp~tl~-~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l 79 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLS-LSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITL 79 (162)
T ss_pred CeEEEecCCCCCCCCeEE-eeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEE
Confidence 6899999999 5888 999999999999999999999998885 4555 355552 22555666654433 367
Q ss_pred EEEeecccee
Q 036691 131 HLVFCPKEIL 140 (426)
Q Consensus 131 ~l~~~~~~g~ 140 (426)
++..+++||.
T Consensus 80 ~l~~rl~GGK 89 (162)
T PF13019_consen 80 RLSLRLRGGK 89 (162)
T ss_pred EEEEeccCCC
Confidence 8888888763
No 111
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0031 Score=48.55 Aligned_cols=78 Identities=10% Similarity=0.179 Sum_probs=71.0
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
.+.+.|...+|.++.+.+..+.+...|....+.+.|-..+..|++|+|+.++.++|-.+++.+.++.|..+....||+
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 466777777889999999999999999999999999999999999999999999999999999999998887766764
No 112
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.53 E-value=0.01 Score=45.74 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=49.5
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCC---C---ceEEE-eCCeEeecccccccccccccCcEEEE
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQS---D---QFTLV-YDGKLLKEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~---~---~q~L~-~~g~~L~d~~~tL~~y~I~~~s~i~l 132 (426)
+.|.|....|+.+. +.++.+.+|+.|...+.+..+.+. . ...|. -.|..|++ +.+|++++|.+|+++++
T Consensus 3 ~rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~-~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDP-DQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEET-TSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCC-cCcHhHcCCCCCCEEEe
Confidence 46677775578888 999999999999999999877632 2 23454 57889999 99999999999999986
No 113
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.43 E-value=0.02 Score=42.55 Aligned_cols=67 Identities=15% Similarity=0.282 Sum_probs=56.8
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC-----cceEEEEcCeecCCCCccccCCCCCCCEEEE
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPL-----HLQSIVFAGKRLFENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-----~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l 354 (426)
+-.+.++|.++.+.++...++..+...+.+...+.. +..+..-+++.|.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 344677899999999999999999999988765432 3567888999999999999999999999865
No 114
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.34 E-value=0.031 Score=43.12 Aligned_cols=72 Identities=11% Similarity=0.261 Sum_probs=61.3
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCc-eEEE--eCCeEeeccc-ccccccccccCcEEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQ-FTLV--YDGKLLKEDT-ATMTSMNIKSESIIHL 132 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~--~~g~~L~d~~-~tL~~y~I~~~s~i~l 132 (426)
+...|.||.++|+.+. -...+++||.+|..-|......+... -.|+ |-.+.+.+++ .||++.++.+++++++
T Consensus 5 ~~~~I~vRlpdG~~l~-~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQ-RRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SEEEEEEEETTSTEEE-EEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CEEEEEEECCCCCEEE-EEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4678899999999998 99999999999999999887766664 6775 6778887745 7999999999999886
No 115
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.05 E-value=0.035 Score=42.78 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=57.7
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE--EEcCeecCC---CCccccCCCCCCCEEEE
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI--VFAGKRLFE---NHVLARYNIQKHSTLHM 354 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~gk~L~d---~~tL~~y~I~~~~ti~l 354 (426)
-.|.||.++|+.+.-.+.+++||++|.+-|....+.+.....| -|-.+.+.+ +.||.+.|+-++++|.+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4688999999999999999999999999997767776667777 456677854 47999999999888855
No 116
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.014 Score=52.39 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=59.2
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
+++.+.+.+...+|+.++|.++++..|+.+..|+++|+|+.|-|...|..|+|++|..-.+-..+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVl 220 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVL 220 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEec
Confidence 567788899999999999999999999999999999999999999999999999997766654443
No 117
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.82 E-value=0.022 Score=45.60 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=43.2
Q ss_pred EEEEecCC-cEEEEEEc--CCCcHHHHHHHHHhHhC--CCCcceEEEEcCeecCCCCccccCC
Q 036691 288 IFVKTWGG-KTITLDVQ--PYNTVQDVKVKLFDKLQ--TPLHLQSIVFAGKRLFENHVLARYN 345 (426)
Q Consensus 288 i~v~~~~g-~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~gk~L~d~~tL~~y~ 345 (426)
|.|+..++ .-.++++. ...||..||..|.+..+ ..-..+||+|+|+.|.|+..|+..-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 34444432 33567777 78999999999999984 4445678899999999998877653
No 118
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.77 E-value=0.021 Score=45.76 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=36.7
Q ss_pred eEEEEEc--CCCcHHHHHHHHHHHhC--CCCCceEEEeCCeEeecccccccc
Q 036691 74 ATVVEAM--PYHTVQNIKTMIQVKEG--IQSDQFTLVYDGKLLKEDTATMTS 121 (426)
Q Consensus 74 ~~~~~v~--~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~~tL~~ 121 (426)
.. ++++ .+.||..||.+|.+..+ ..-..+||+|+|+.|.| ...|+.
T Consensus 14 l~-L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d-~t~l~~ 63 (97)
T PF10302_consen 14 LP-LDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLND-HTDLSS 63 (97)
T ss_pred ce-eecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCc-cchhhh
Confidence 45 6676 78999999999999974 33456899999999999 666554
No 119
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.65 E-value=0.078 Score=40.79 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=54.6
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCC-CcceEEE--EcCeecCC-CCccccCCCCCCCEE
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTP-LHLQSIV--FAGKRLFE-NHVLARYNIQKHSTL 352 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip-~~~q~L~--~~gk~L~d-~~tL~~y~I~~~~ti 352 (426)
.-.|.|+..+|+.+.-.+..++||++|.+-|....+-+ .....|. |-.+.|.| +.||.+.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 44688999999999999999999999999999876432 3556674 66788855 789999999875444
No 120
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.62 E-value=0.1 Score=40.77 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=58.6
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC--eecC--------CCCccccCCCCCCCEEE
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG--KRLF--------ENHVLARYNIQKHSTLH 353 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g--k~L~--------d~~tL~~y~I~~~~ti~ 353 (426)
....|.++.++|+.+.-.+..++||++|..-|.. .+-.++...|+.+- +.+. .+.||.+.|+.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 3467899999999999999999999999999965 45566889998766 7886 36799999999988875
Q ss_pred E
Q 036691 354 M 354 (426)
Q Consensus 354 l 354 (426)
+
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 4
No 121
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.57 E-value=0.073 Score=40.97 Aligned_cols=72 Identities=15% Similarity=0.286 Sum_probs=58.7
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEeecc--cccccccccccCcEEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLKED--TATMTSMNIKSESIIHL 132 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d~--~~tL~~y~I~~~s~i~l 132 (426)
+...|.||.++|+.+. -...+++|+.++.+-|....+.......|+ |-.+.+.++ +.||.+.++.+++++.+
T Consensus 3 ~~~~I~iRlPdG~ri~-~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLV-RRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3567889999999998 899999999999999976666666667775 667778653 47999999988888865
No 122
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.47 E-value=0.067 Score=39.85 Aligned_cols=68 Identities=15% Similarity=0.235 Sum_probs=53.6
Q ss_pred eeEE--EcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCc-----eeEEecCeecCCCccccccCCCCCccccc
Q 036691 214 QIFV--RTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGN-----QDLFYAGTKLEACKTLASYGIKNNYVLDV 281 (426)
Q Consensus 214 ~i~V--~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~-----q~L~~~g~~L~d~~tL~~y~I~~~~~l~l 281 (426)
.|+| +.++|.++.+.++..-+|..+-..+++...++... .+..-.++.|.++..|++|+|.+|+.+.+
T Consensus 6 kVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 6 KVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 3444 45789999999999999999999998877655332 23334468889999999999999998764
No 123
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.39 E-value=0.094 Score=40.35 Aligned_cols=69 Identities=16% Similarity=0.296 Sum_probs=55.9
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCC-CCCceEEE--eCCeEeecccccccccccccCcEE
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGI-QSDQFTLV--YDGKLLKEDTATMTSMNIKSESII 130 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~--~~g~~L~d~~~tL~~y~I~~~s~i 130 (426)
...|-||.++|+.+. .....++||++|.+-|....+- ......|+ |-.+.|.|++.||.|.|+.+.+.+
T Consensus 4 ~t~iqiRlpdG~r~~-~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLV-QKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 457889999999998 8999999999999999986542 23456665 778889887889999999875544
No 124
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.34 E-value=0.12 Score=39.43 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=52.2
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecCC---CCccccCCCCCCCEE
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLFE---NHVLARYNIQKHSTL 352 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~d---~~tL~~y~I~~~~ti 352 (426)
-.|.|+.++|+.+.-.+.+++||++|.+-|.....- .....|+ |-.+.+.+ +.||.+.|+.+...+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 468899999999999999999999999999876543 4556664 55677754 789999999954433
No 125
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.30 E-value=0.11 Score=40.02 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=55.7
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE--EEcCeecCC---CCccccCCCCCCCEEEE
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI--VFAGKRLFE---NHVLARYNIQKHSTLHM 354 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~gk~L~d---~~tL~~y~I~~~~ti~l 354 (426)
-.|.|+.++|..+.-.+..++|+++|.+-|....+-+ ....| -|-.|.+.+ +.||.+.|+.+.++|.+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4588999999999999999999999999999765543 44566 456688854 57999999999998865
No 126
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.32 E-value=0.3 Score=37.15 Aligned_cols=68 Identities=13% Similarity=0.358 Sum_probs=52.5
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEeec--ccccccccccccCcEE
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLKE--DTATMTSMNIKSESII 130 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d--~~~tL~~y~I~~~s~i 130 (426)
...|.||.++|+.+. -...+++||.+|.+-|.....- .....|+ |-.+.+.+ .+.||.+.|+.+...+
T Consensus 2 ~t~i~iRlpdG~~~~-~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 2 TTKIQIRLPDGKRLE-QRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred cEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 356889999999998 8999999999999999876433 4555665 56677754 5889999999854433
No 127
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.13 E-value=0.35 Score=36.87 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=52.7
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEE----c--CeecCCCCccccCCCCCCCEEEEEeec
Q 036691 290 VKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVF----A--GKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 290 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~----~--gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
|+.++|...+++++++.|+.+|-+.|+++.|+...+. -|.+ + ..-|+.+++|.++.........+.+|.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence 5678999999999999999999999999999876554 4666 1 245688899999988744444444443
No 128
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=0.095 Score=47.17 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=56.1
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEE
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l 132 (426)
+++.+. +.+..-+||.++|.+++..+|+.+..|+++|.|+.|-| ...|..++|.+|+...+
T Consensus 155 T~~d~~-lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~d-kt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 155 TREDFW-LTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVD-KTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhhee-ecccCcCcHHHHHHHHHHhhccchhhheeeccCCceec-cccceeeeecCCCEEEE
Confidence 567777 88889999999999999999999999999999999999 99999999999977665
No 129
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.97 E-value=0.43 Score=44.06 Aligned_cols=101 Identities=21% Similarity=0.156 Sum_probs=58.3
Q ss_pred EEEEeecccccHHHHHHHHHHHhCCCCC---ceeEE--ecC---eecCCCccccccCCCCCccccc---------CC---
Q 036691 224 IVRLEVEVLIVVRDVKEIVANIIDLSLG---NQDLF--YAG---TKLEACKTLASYGIKNNYVLDV---------LP--- 283 (426)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~~ip~~---~q~L~--~~g---~~L~d~~tL~~y~I~~~~~l~l---------~~--- 283 (426)
.+.+-|+.+.||.+|-+.+..+.+++.+ ..++. +++ +.+..+.++... .+...+++ ..
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~ 112 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES 112 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence 4678889999999999999999999765 34442 344 446777777664 22223333 11
Q ss_pred -CCcEEEEEec-------CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce
Q 036691 284 -SPFQIFVKTW-------GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ 326 (426)
Q Consensus 284 -~~m~i~v~~~-------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q 326 (426)
..+.|.|--. -|-.|.+.|.|++|..++|++|++++|+|-...
T Consensus 113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF 163 (213)
T PF14533_consen 113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEF 163 (213)
T ss_dssp -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHH
T ss_pred ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhh
Confidence 1244554333 256788999999999999999999999987654
No 130
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.97 E-value=0.4 Score=37.08 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=58.8
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC---CCCccccCCCCCCCEEEEE
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF---ENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~---d~~tL~~y~I~~~~ti~l~ 355 (426)
-.|.|+.++|+...-.+..++++.+|..-+.. .|.+++...|+ |--|.+. .+.||.+.|+.+..+|.+-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 46899999999999999999999999999998 68888999885 4556663 3579999999999998663
No 131
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.62 E-value=0.47 Score=36.38 Aligned_cols=70 Identities=11% Similarity=0.312 Sum_probs=55.8
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEeec--ccccccccccccCcEEEE
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLKE--DTATMTSMNIKSESIIHL 132 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d--~~~tL~~y~I~~~s~i~l 132 (426)
...|.||.++|+.+. -..+.++|+.++.+-|....+-+ ..-.|+ |-.+.+.+ .+.||.+.|+.+.+++.+
T Consensus 4 ~~~i~iRlp~G~~~~-~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLK-QTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEE-EEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 457889999999998 88999999999999998765432 445665 67788864 257999999999998876
No 132
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=93.59 E-value=0.11 Score=48.02 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=51.0
Q ss_pred ceeEEEcCCCc-EEE-EeecccccHHHHHHHHH-HHhCCCCCceeEEe----cCeecCCCccccccCCCCCccccc
Q 036691 213 IQIFVRTPIEE-IVR-LEVEVLIVVRDVKEIVA-NIIDLSLGNQDLFY----AGTKLEACKTLASYGIKNNYVLDV 281 (426)
Q Consensus 213 ~~i~V~~~~g~-~~~-l~v~~~~tV~~lK~~I~-~~~~ip~~~q~L~~----~g~~L~d~~tL~~y~I~~~~~l~l 281 (426)
|.|++..+++. ... ...+.+.|+.|+++++. +...+.+..+++.+ .|+.|.|+.+|++|+..++.++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 56777666653 333 55677889999996654 55677775555433 389999999999999999988887
No 133
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.57 E-value=0.51 Score=36.36 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=58.5
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC---CCCccccCCCCCCCEEEE
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF---ENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~---d~~tL~~y~I~~~~ti~l 354 (426)
...|.|+.++|....-.+..++++++|..-+..+ |.++...+|+ |--+.+. .+.||.+.|+.+..+|.+
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 4578899999999999999999999999999875 7788888884 6667774 356999999999988865
No 134
>PRK06437 hypothetical protein; Provisional
Probab=93.36 E-value=0.66 Score=34.38 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=48.1
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
.++..++++....||.+|-+. .|+++....+..+|..+. .++-+++|+.|.++..+.||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 456677888888899988754 588988888999999997 66678899999988777665
No 135
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=93.26 E-value=0.17 Score=46.74 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=50.9
Q ss_pred cEEEEEecCC-cEEE-EEEcCCCcHHHHHHHHHhH-hCCCCcceEE----EEcCeecCCCCccccCCCCCCCEEEE
Q 036691 286 FQIFVKTWGG-KTIT-LDVQPYNTVQDVKVKLFDK-LQTPLHLQSI----VFAGKRLFENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 286 m~i~v~~~~g-~~~~-l~v~~~~tV~~lK~~i~~~-~gip~~~q~L----~~~gk~L~d~~tL~~y~I~~~~ti~l 354 (426)
|.|++...++ ...+ .+.+...|+.|+++.+..+ ..+-+..+|+ --+|+.|-|+.+|++|+..+++++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 5667766554 2333 6777889999999766654 5666654543 45899999999999999999987754
No 136
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.15 E-value=0.74 Score=35.92 Aligned_cols=71 Identities=11% Similarity=0.275 Sum_probs=56.9
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC--CeEee-------cccccccccccccCcEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD--GKLLK-------EDTATMTSMNIKSESII 130 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~-------d~~~tL~~y~I~~~s~i 130 (426)
+..+|-||.++|+.+. -....++||++|..-|.. .+..+....|+.+ -+.+. |.+.||.+-|+.+.+++
T Consensus 3 ~~~~I~iRlp~G~Rl~-rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 3 DTVKIVFKLPNGTRVE-RRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred ceEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 4678899999999988 888899999999999964 4556678888754 37775 33679999999988877
Q ss_pred EE
Q 036691 131 HL 132 (426)
Q Consensus 131 ~l 132 (426)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 65
No 137
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=92.99 E-value=0.32 Score=46.08 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=72.7
Q ss_pred EEeecccccHHHHHHHHHHHhCCCCCceeEEec----C--eecCCCccccccCCCCCccccc---CC-------------
Q 036691 226 RLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYA----G--TKLEACKTLASYGIKNNYVLDV---LP------------- 283 (426)
Q Consensus 226 ~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~----g--~~L~d~~tL~~y~I~~~~~l~l---~~------------- 283 (426)
.+-|+.+++|+++-..|.+..|+|++..-+.|. + ..++...|++...+.+|+.|.. .+
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~ 167 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK 167 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence 466788999999999999999999887766665 2 5578999999999999999887 11
Q ss_pred -------CCcEEEEEec---CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE
Q 036691 284 -------SPFQIFVKTW---GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV 329 (426)
Q Consensus 284 -------~~m~i~v~~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~ 329 (426)
..+.|.++.. .+..|++.++...|-.+|-++|+++.|++|+..||.
T Consensus 168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1355555542 345899999999999999999999999999988884
No 138
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.26 Score=44.35 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=50.1
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCcceEE-EEcC-----eecC-CCCccccCCCCCCCEEEEEe
Q 036691 298 ITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI-VFAG-----KRLF-ENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 298 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L-~~~g-----k~L~-d~~tL~~y~I~~~~ti~l~~ 356 (426)
..-+.+++.||+++|.+++-.+|.+++.+.| +|.| ..|. ++..|..|+..+|..||++=
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 3456679999999999999999999999999 6766 4554 47799999999999999864
No 139
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=92.83 E-value=0.2 Score=38.27 Aligned_cols=57 Identities=32% Similarity=0.367 Sum_probs=48.8
Q ss_pred EcCCCcHHHHHHHHHhHhC-CCCcceEEEEcCeecCCCCccccCC-CCCCCEEEEEeec
Q 036691 302 VQPYNTVQDVKVKLFDKLQ-TPLHLQSIVFAGKRLFENHVLARYN-IQKHSTLHMVLAP 358 (426)
Q Consensus 302 v~~~~tV~~lK~~i~~~~g-ip~~~q~L~~~gk~L~d~~tL~~y~-I~~~~ti~l~~~~ 358 (426)
|+++++|.+++..+..... .......|.++|+.|++...|++.. +++|+++.|+...
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5789999999999988754 6677889999999999999998884 8889999998653
No 140
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=92.58 E-value=1.4 Score=40.58 Aligned_cols=101 Identities=17% Similarity=0.066 Sum_probs=56.8
Q ss_pred cEEEEeccCCCcHHHHHHHHhhhhCCCCC-cEEE--E--ECCee---ccCCCCcccccCCCcceeeec---------c--
Q 036691 150 EIVNLEVKHSFAIRDVKAIVGSVVGVSAA-DHIM--I--YEGKK---LEDSKTLAFYDMKDECLLEMF---------P-- 210 (426)
Q Consensus 150 k~~~i~v~~~~tV~~lK~~I~~~~gip~~-~q~L--~--~~g~~---L~d~~tL~~y~I~~~s~i~l~---------~-- 210 (426)
+.+.+.+....||.+|...++++.+++.+ ...| . ++++. +..+.++... .+..++++- .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 56888999999999999999999998776 2333 2 35554 5666666655 222233221 1
Q ss_pred --CcceeEEEc-------CCCcEEEEeecccccHHHHHHHHHHHhCCCCCc
Q 036691 211 --SSIQIFVRT-------PIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGN 252 (426)
Q Consensus 211 --~~~~i~V~~-------~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~ 252 (426)
+.+-|.|-- .-|-.+.+.|.+++|..++|++|++++|+|...
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke 162 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE 162 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence 113344422 227778999999999999999999999998544
No 141
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=0.4 Score=43.17 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=49.7
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEE-eCC-----eEeecccccccccccccCcEEEEEe
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLV-YDG-----KLLKEDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g-----~~L~d~~~tL~~y~I~~~s~i~l~~ 134 (426)
...+++.||++||.+++-..|.+++...|. |.| -.|+|++..|..|...+|-.||++-
T Consensus 17 kr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 17 KRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 566789999999999999999999999984 655 3677768899999999999999843
No 142
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.44 E-value=0.92 Score=34.93 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=58.1
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEE
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l 132 (426)
..+|-||.++|.... -....++++.+|-.-|... |.++...+|+ |=.+.+. |.+.||.+.|+....++.+
T Consensus 4 ~~~i~iRlP~G~r~~-rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 4 ISKLRVRTPSGDFLE-RRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred eEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 457888999999988 8899999999999999874 7888888886 6677774 4367999999998888765
No 143
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.23 Score=38.44 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=64.5
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
.+.+.|-.-+|.++. +.|..+.|...|...-..+.|-..+..|++|.|+..+- +.|-.|++..+++.|..+..--||
T Consensus 24 hinLkvv~qd~telf-FkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~-dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 24 HINLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDL-DQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ccceEEecCCCCEEE-EEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCC-CCChhhcCCccchHHHHHHHHhcC
Confidence 445555555778887 99999999999999999999999999999999999988 999999999999988765443444
No 144
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.67 E-value=0.95 Score=34.38 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=47.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCC----CCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKLQT----PLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~gi----p~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
...+++....||.+|.+.+..+.+- ......+..+|+... .++-+++|+.|.++..+.||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4567777789999999999987642 334556777888887 45679999999999888776
No 145
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.63 E-value=1.4 Score=34.08 Aligned_cols=72 Identities=11% Similarity=0.304 Sum_probs=59.7
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l~ 133 (426)
..-+|.||.++|+... -....++++.+|-.-+.. .|.+++...|+ |-.+.+. |.+.||.+.|+.+..++.+.
T Consensus 4 ~~t~i~vRlP~G~r~~-rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 4 PKARLMLRYPDGKREQ-IALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 3457889999999998 888999999999999988 57888988887 6666663 32679999999999988764
No 146
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=91.51 E-value=1.3 Score=32.42 Aligned_cols=65 Identities=12% Similarity=0.244 Sum_probs=46.9
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|.+ +|+.+.+ + ..|+.+|.+.+ ++++....+-.++..+. .....+.-+++||.|.++..+.||
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 44544 6777776 3 35888888765 67766666788888776 335667789999999998877776
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=91.32 E-value=0.7 Score=35.59 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=46.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
.+...++-..++..||..++.+.|+..+...+......|+++++|.+-+++-..++.+.+...
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 455667778899999999999999999999999999889999999999999999999987654
No 148
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=90.95 E-value=1.5 Score=41.60 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=80.4
Q ss_pred CceeEEEEcCC--Ccee---EEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC------eEeecccccccccccccCc
Q 036691 60 SEMKLFVKIPT--NQTA---TVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG------KLLKEDTATMTSMNIKSES 128 (426)
Q Consensus 60 ~~m~i~Vk~~~--g~~~---~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g------~~L~d~~~tL~~y~I~~~s 128 (426)
+.+-||+|..+ .+++ ..+.|+.+++|.++-..|.++-|+|++...++|.- ..++. ..++....+++|+
T Consensus 67 ~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~-~~t~~~~el~~Gd 145 (249)
T PF12436_consen 67 DDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDP-NQTFEKAELQDGD 145 (249)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--S-SSBHHHTT--TTE
T ss_pred CcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCC-CCchhhcccCCCC
Confidence 45667777642 2222 12578899999999999999999999988888753 24544 8999999999999
Q ss_pred EEEEEeeccc--------------------eeeeEee---cccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEE
Q 036691 129 IIHLVFCPKE--------------------ILSIFVK---AATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIY 184 (426)
Q Consensus 129 ~i~l~~~~~~--------------------g~~i~Vk---~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 184 (426)
.|-....... -+.+.+. ...+..+.+++....|-.+|-+.|.++.|++|+.-+|.-
T Consensus 146 Ii~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 146 IICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp EEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred EEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 9987664321 1233332 345679999999999999999999999999999887775
No 149
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=90.85 E-value=0.81 Score=35.71 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=37.2
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc---ceEEEE
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH---LQSIVF 330 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~---~q~L~~ 330 (426)
+.++++.|+++.+.+.|+..+.+|++.|..+.|+... ...|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 5678899999999999999999999999999999874 455544
No 150
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=90.53 E-value=0.93 Score=34.15 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=41.4
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK 333 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk 333 (426)
+.|..++|+...+.+.|+.|+.++-+++.++.|+.++...+++.|.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 4577889999999999999999999999999999999998877653
No 151
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=90.38 E-value=2.6 Score=31.40 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=44.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
...+++.+..||.+|-+.+ ++++..-.+..+|..+. .++-+++|+.|.++..+.||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccccCC
Confidence 5678888888999888665 77777777888999884 36678999999988777665
No 152
>smart00455 RBD Raf-like Ras-binding domain.
Probab=90.00 E-value=1.2 Score=33.44 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=40.9
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG 332 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 332 (426)
+.|..++|+...+.+.|+.|+.++-+.+.++.|+.++...+++.|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 356678999999999999999999999999999999999998855
No 153
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.60 E-value=2.1 Score=32.89 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=48.5
Q ss_pred cEEEEEec------CC-cEEEEEEcCCCcHHHHHHHHHhHhC-CCC--cceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691 286 FQIFVKTW------GG-KTITLDVQPYNTVQDVKVKLFDKLQ-TPL--HLQSIVFAGKRLFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 286 m~i~v~~~------~g-~~~~l~v~~~~tV~~lK~~i~~~~g-ip~--~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~ 355 (426)
|.|.|+.+ .| ...++++....||++|.+.+..+.. +.. ..-.+..+|+... .++-+++|++|.++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 56666665 24 4567788888999999999977651 111 1123566777654 44567899999998
Q ss_pred eecCCC
Q 036691 356 LAPSSR 361 (426)
Q Consensus 356 ~~~~gg 361 (426)
....||
T Consensus 77 PpvsGG 82 (82)
T PLN02799 77 PPISGG 82 (82)
T ss_pred CCCCCC
Confidence 877776
No 154
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=88.98 E-value=3 Score=32.60 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=44.8
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--e--CCe-EeecccccccccccccCcEEEEEeeccce
Q 036691 73 TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--Y--DGK-LLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~--~g~-~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
.++ ...+..|||+.+...+.+...+ ..+-||- | ++. .|.+++.|+.|.++..|.+|.+-.|-.+|
T Consensus 15 ~~t-~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 15 VLT-KQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEE-EEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred HhH-hhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 455 7778999999999999999999 6667773 2 232 57675789999999999999887776665
No 155
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=88.71 E-value=3.1 Score=32.12 Aligned_cols=57 Identities=11% Similarity=0.241 Sum_probs=41.7
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~ 134 (426)
..++-..++..||..++.+.|+..+.-.+...+..|+. +++|.+-|++-..++.+.+
T Consensus 7 q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~-~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 7 QHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEP-HKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--T-TSBTTTSS----SEEEEEE
T ss_pred EEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecC-CccHHHhhccccCEEEEEE
Confidence 56777889999999999999999999999999988998 9999999999888888743
No 156
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=88.18 E-value=3.1 Score=31.50 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=47.3
Q ss_pred eecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCC-cEEEEE----C--CeeccCCCCcccccCC
Q 036691 144 VKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAA-DHIMIY----E--GKKLEDSKTLAFYDMK 201 (426)
Q Consensus 144 Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~----~--g~~L~d~~tL~~y~I~ 201 (426)
|..++|...+++++++.|+.++-+.|.++.|+... ..-|.+ + ..+|+.+++|.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 45678999999999999999999999999998764 467777 2 2458888999888776
No 157
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=88.13 E-value=1.7 Score=33.32 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=37.5
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK 110 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~ 110 (426)
|.|++ .+ ++. +.|+++.+..+|.++|.++.++|++...|.|...
T Consensus 5 vKV~f-~~-tIa-Irvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 5 VKVHF-KY-TVA-IQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEE-EE-EEE-EEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 34444 23 899 9999999999999999999999999999999655
No 158
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=87.37 E-value=1.6 Score=34.04 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=37.8
Q ss_pred eEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCC---CcEEEEE
Q 036691 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSA---ADHIMIY 184 (426)
Q Consensus 142 i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~---~~q~L~~ 184 (426)
+..+++.|+.+.+.+.++..+.+|++.|.+++|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 456789999999999999999999999999999887 4666666
No 159
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=86.55 E-value=2.8 Score=32.17 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=37.1
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK 333 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk 333 (426)
|.|+.- + ++.+.+.++-+..+|.++|.++.++|+++..|.|.-.
T Consensus 5 vKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 5 VKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 444442 3 8999999999999999999999999999999988653
No 160
>KOG4261 consensus Talin [Cytoskeleton]
Probab=85.43 E-value=1.6 Score=46.65 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=82.4
Q ss_pred EEEEeccCCCcHHHHHHHHhhhhC---CCCCcEEEEE------CCeeccCCCCcccccCCCcceeeeccCcceeEEEcCC
Q 036691 151 IVNLEVKHSFAIRDVKAIVGSVVG---VSAADHIMIY------EGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPI 221 (426)
Q Consensus 151 ~~~i~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~------~g~~L~d~~tL~~y~I~~~s~i~l~~~~~~i~V~~~~ 221 (426)
.-++..+++.+|-|-=+.|.+++. .-+..+-|+. .|.+|+.++++.+|...+++++.-.+.+-...|.++.
T Consensus 14 ~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r~lkvrmld 93 (1003)
T KOG4261|consen 14 VKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQRPLKVRMLD 93 (1003)
T ss_pred eeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcccceeeecc
Confidence 336778899999988888877764 2244554543 5788999999999999999999998777778889999
Q ss_pred CcEEEEeecccccHHHHHHHHHHHhCCC
Q 036691 222 EEIVRLEVEVLIVVRDVKEIVANIIDLS 249 (426)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~~ip 249 (426)
|...++.|..+.+|+.|=--|..+.||.
T Consensus 94 g~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 94 GAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred cccceeeecccccHHHHHHHHHhccCcc
Confidence 9999999999999999999998888876
No 161
>PRK06437 hypothetical protein; Provisional
Probab=85.39 E-value=6.6 Score=28.99 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=44.3
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
.++.-. ++++.+.||.+|-++ .|++++.--+..+|+.+.. ++-+++|+.+.++.-..|
T Consensus 9 g~~~~~-~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~------~~~L~dgD~Veiv~~V~G 66 (67)
T PRK06437 9 GHINKT-IEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLE------DHNVKKEDDVLILEVFSG 66 (67)
T ss_pred CCcceE-EEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCC------ceEcCCCCEEEEEecccC
Confidence 556566 888888899988765 5888888888899998864 667888999998443333
No 162
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=85.36 E-value=6 Score=30.13 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=44.6
Q ss_pred EEEEEEcCC-CcHHHHHHHHHhHhC-C-C-CcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 297 TITLDVQPY-NTVQDVKVKLFDKLQ-T-P-LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 297 ~~~l~v~~~-~tV~~lK~~i~~~~g-i-p-~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
...+++.++ .||.+|.+.+.++.+ + . .....+..+|+...+ +.-+++|+.|.++....||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 356788866 899999999998864 1 1 123456677777664 5688999999998888776
No 163
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=85.33 E-value=2.6 Score=31.71 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=40.3
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK 110 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~ 110 (426)
+.|..++|+... +.+.|++|+.++-+++.++.|+.++.-.+.+.|.
T Consensus 2 ~~V~LPng~~t~-V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 2 CRVYLPNGQRTV-VPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred EEEECcCCCeEE-EEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 456778999988 9999999999999999999999999988876643
No 164
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=84.46 E-value=5 Score=29.37 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=43.6
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+|+.+.+ .+..|+.+|-+. .++|+....+..++..+..+. ...+ +++||.|.++-.+.||
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 5665555 466787777553 588999999999999775432 2245 9999999998776665
No 165
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=84.31 E-value=8.9 Score=34.46 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=54.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEEc---C---eecCCCCccccCCCC-CCCEEEEE
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVFA---G---KRLFENHVLARYNIQ-KHSTLHMV 355 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~---g---k~L~d~~tL~~y~I~-~~~ti~l~ 355 (426)
.++.+.|..++|.+..+.+++++|++++...++.+.|++.... -|.+- + ..|+..+++.+.... ....+++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 4567889999999999999999999999999999999965322 33331 1 346667777777665 34455554
Q ss_pred eec
Q 036691 356 LAP 358 (426)
Q Consensus 356 ~~~ 358 (426)
.|.
T Consensus 82 ~r~ 84 (207)
T smart00295 82 VKF 84 (207)
T ss_pred EEE
Confidence 443
No 166
>smart00455 RBD Raf-like Ras-binding domain.
Probab=84.09 E-value=3.6 Score=30.72 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=39.9
Q ss_pred EEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC
Q 036691 65 FVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG 109 (426)
Q Consensus 65 ~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 109 (426)
.|-.++|+... +.+.|+.|+.++=+.+-++.|+.++.-.+...|
T Consensus 3 ~v~LP~~~~~~-V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTV-VKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEE-EEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45677899999 999999999999999999999999999988855
No 167
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=83.90 E-value=1.7 Score=33.09 Aligned_cols=54 Identities=22% Similarity=0.421 Sum_probs=42.7
Q ss_pred ccCCCcHHHHHHHHhhhhC-CCCCcEEEEECCeeccCCCCccccc-CCCcceeeec
Q 036691 156 VKHSFAIRDVKAIVGSVVG-VSAADHIMIYEGKKLEDSKTLAFYD-MKDECLLEMF 209 (426)
Q Consensus 156 v~~~~tV~~lK~~I~~~~g-ip~~~q~L~~~g~~L~d~~tL~~y~-I~~~s~i~l~ 209 (426)
|.+.++|.+++..+..... -....+.|.++|..|++...+++.. +.+|+++.++
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence 4678999999999988766 3446789999999999888887776 6666666665
No 168
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=83.76 E-value=10 Score=27.79 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=45.7
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|+| +|+.+++ ....|+.+|.+. .+++.....+-.++..+.. ....++-+++||.|.++..+.||
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 45554 5565554 566789888765 4556666777888888742 23555668999999998877766
No 169
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=83.67 E-value=4.4 Score=30.31 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=51.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCC--CCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKLQT--PLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
...+.+....||.+|.+.+..+.+- ......+..+|+...+ ...+.-+++|+.|.++..+.||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5678888999999999999887631 2366778889999888 4677788999999998888776
No 170
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=83.33 E-value=9.8 Score=29.79 Aligned_cols=65 Identities=6% Similarity=-0.020 Sum_probs=44.6
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE----cC-eec-CCCCccccCCCCCCCEEEEEeecCCC
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF----AG-KRL-FENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~----~g-k~L-~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..++-.++..|||+.+...+.+.+.| ...-||-- ++ ..| +.+.|+.+.||..|-+|-+=.|-..|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 46778889999999999999999999 66678832 22 335 45679999999999988776665444
No 171
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=83.17 E-value=11 Score=29.25 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=45.1
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhHhCC------C-----CcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDKLQT------P-----LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~~gi------p-----~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
....+++. ..||.+|.+.+.++.+- . .....+..+|+....+.. .-+++|+.|.++..+.||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 34667775 88999999999887641 0 123556778887765432 678999999999888876
No 172
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=0.6 Score=45.09 Aligned_cols=76 Identities=21% Similarity=0.318 Sum_probs=55.6
Q ss_pred CCcEEEEEecCCc--EEEEEEcCCCcHHHHHHHHHhHhC--CCCcceEEEEcCeecCCCCccccCCCC--CCCEEEEEee
Q 036691 284 SPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDKLQ--TPLHLQSIVFAGKRLFENHVLARYNIQ--KHSTLHMVLA 357 (426)
Q Consensus 284 ~~m~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~gk~L~d~~tL~~y~I~--~~~ti~l~~~ 357 (426)
.+..++||..+.+ -.++..+..-||++||..++.-+. =-+.+|||+|.||.|.|..+|+|.=++ +.-..|+++.
T Consensus 8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn 87 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN 87 (391)
T ss_pred cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 4566788887654 445566678899999999988653 223589999999999999999987553 4556666654
Q ss_pred cC
Q 036691 358 PS 359 (426)
Q Consensus 358 ~~ 359 (426)
.+
T Consensus 88 sk 89 (391)
T KOG4583|consen 88 SK 89 (391)
T ss_pred CC
Confidence 33
No 173
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=82.76 E-value=9.8 Score=27.67 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=44.7
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+|+.+ ++....||.++-+. .+++...-.+..+|..+... ...+.-+++|+.|.++..+.||
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 56654 55667788877644 68888888888998877644 2445568999999998777665
No 174
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=82.72 E-value=10 Score=28.21 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=40.3
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 73 TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
... ++++.+.||.++-+.+ ++++..-.+..+|+.... +.-+++|+.+.++--..|
T Consensus 15 ~~~-~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~------~~~l~~gD~Veii~~V~G 69 (70)
T PRK08364 15 EKE-IEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE------DDPVKDGDYVEVIPVVSG 69 (70)
T ss_pred ceE-EEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC------CcCcCCCCEEEEEccccC
Confidence 455 7888888999988764 677777677788888754 556788999988544443
No 175
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=82.46 E-value=5.1 Score=29.23 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=44.9
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+|+.+ ++....||.+|.+.+ +++.+...+..+|+.+..+ ...++-+++||.|.++..+.||
T Consensus 5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 45544 445677899887665 5778888888999887543 3455679999999998887776
No 176
>PRK07440 hypothetical protein; Provisional
Probab=82.43 E-value=11 Score=28.03 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=49.6
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+.|.|.+ +|+. .++....||.+|-+ ..++++....+-.+|..+.-+ ...++-+++||.|.++--+.||
T Consensus 3 ~~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 3 NPITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 4566665 5565 45567788887764 557888888889999888633 3566678999999998777665
No 177
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=82.23 E-value=2 Score=42.04 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC--CccccCCCCCCCEEEEEe
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN--HVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~--~tL~~y~I~~~~ti~l~~ 356 (426)
..+.+.+.++..-...++++.++...|++.+.--|+|+++.+.++ .+|..||+..++++.+-.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ 75 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRC 75 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccC
Confidence 457888999999999999999999999999999999999999765 689999999999986643
No 178
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=82.09 E-value=7.6 Score=27.77 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=36.2
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~ 134 (426)
+++..+.|..+||.++.. +.-.++++|-+..+ |+-+++|+.+.+.-
T Consensus 10 ~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~------d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 10 IETEENTTLFELRKESKP------DADIVILNGFPTKE------DIELKEGDEVFLIK 55 (57)
T ss_pred EEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCC------ccccCCCCEEEEEe
Confidence 778888999999998654 33378999998877 56778889888743
No 179
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=81.58 E-value=3.9 Score=43.47 Aligned_cols=175 Identities=18% Similarity=0.231 Sum_probs=101.5
Q ss_pred cEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEE----CCeec--cCCCCcccccCCCcceeeec------cCc--cee
Q 036691 150 EIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIY----EGKKL--EDSKTLAFYDMKDECLLEMF------PSS--IQI 215 (426)
Q Consensus 150 k~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~----~g~~L--~d~~tL~~y~I~~~s~i~l~------~~~--~~i 215 (426)
+.+.+.|....++..+|+-|++..++|.+...+.- ||..+ .++.||... .++.+|.+. ++. |.|
T Consensus 877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI 954 (1203)
T KOG4598|consen 877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKI 954 (1203)
T ss_pred hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEE
Confidence 36788999999999999999999999999887764 33332 344555433 345555554 222 222
Q ss_pred EE-EcCC---CcE---EEEeecccccHHHHHHHHHHHhC--------CCCCceeEE-----ecCeec-CCCccccccCCC
Q 036691 216 FV-RTPI---EEI---VRLEVEVLIVVRDVKEIVANIID--------LSLGNQDLF-----YAGTKL-EACKTLASYGIK 274 (426)
Q Consensus 216 ~V-~~~~---g~~---~~l~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~-----~~g~~L-~d~~tL~~y~I~ 274 (426)
+. .... .++ +..-+..++||+..|..+-.+.. ++..+.|+- -.|+.+ +++.++.|-+-.
T Consensus 955 ~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 955 ILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred EeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhh
Confidence 21 1111 111 23446889999998877544432 222222221 123444 445455443311
Q ss_pred CCccccc-----------CCCCcEEEEEecCCcEEEEEEc-------CCCcHHHHHHHHHhHhCCCCcceEE
Q 036691 275 NNYVLDV-----------LPSPFQIFVKTWGGKTITLDVQ-------PYNTVQDVKVKLFDKLQTPLHLQSI 328 (426)
Q Consensus 275 ~~~~l~l-----------~~~~m~i~v~~~~g~~~~l~v~-------~~~tV~~lK~~i~~~~gip~~~q~L 328 (426)
-.+.+.+ ......|+|+-| +.-++++. ..+++.++++.+.+-.|||++...+
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW--~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~ 1104 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRW--RPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAI 1104 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCccchhhheec--cccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhh
Confidence 1111111 122356788877 33333333 3457899999999999999998765
No 180
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=81.51 E-value=9.4 Score=29.66 Aligned_cols=66 Identities=8% Similarity=0.084 Sum_probs=48.5
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|.|.| +|+.+.+ ....||.+|-+. .++++....+-.+|..+. ......+-+++||.|.++-.+.||
T Consensus 19 m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 19 ITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred EEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 45544 5665544 567788877664 478888888889999884 345777889999999998777665
No 181
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=80.29 E-value=0.54 Score=45.23 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHh----------HhCCCCcceE-----EEEcCeecCCCCccccCCCC-------CCCEEEEEeecCCCc
Q 036691 305 YNTVQDVKVKLFD----------KLQTPLHLQS-----IVFAGKRLFENHVLARYNIQ-------KHSTLHMVLAPSSRI 362 (426)
Q Consensus 305 ~~tV~~lK~~i~~----------~~gip~~~q~-----L~~~gk~L~d~~tL~~y~I~-------~~~ti~l~~~~~gg~ 362 (426)
+.||.++|..++. ++++|.+..+ |+|+.|.+-|++||.+..=. .+.++.+.+-+-||+
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCc
Confidence 5899999999999 8999999999 99999999999999887544 467777766666775
Q ss_pred c
Q 036691 363 I 363 (426)
Q Consensus 363 ~ 363 (426)
.
T Consensus 183 ~ 183 (309)
T PF12754_consen 183 A 183 (309)
T ss_dssp -
T ss_pred c
Confidence 4
No 182
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=80.17 E-value=6.8 Score=29.32 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=36.8
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG 332 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 332 (426)
+.|..++|+...+.+.|+.||.+.-.++.++.|+.++...++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 567778999999999999999999999999999999988776544
No 183
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=79.18 E-value=9.3 Score=27.72 Aligned_cols=61 Identities=8% Similarity=0.074 Sum_probs=44.1
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+|+.+.+ ..+.|+.+|.+.+ ++++....+..+|..+..+ ...++-+++||.|.++..+.||
T Consensus 4 Ng~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 5555544 5667888887754 6777777788888887433 2455679999999998877776
No 184
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=79.10 E-value=9.7 Score=27.69 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=52.3
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHh---CCCCcceEE-EEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKL---QTPLHLQSI-VFAGKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~---gip~~~q~L-~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
+|+...++.++....--+.++--+.+ |-|++.-.| --+|..|+-++.+.|||+.++-++.|.++-
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 67888899998888777777776654 477777766 457888888999999999999998887653
No 185
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=79.01 E-value=13 Score=26.85 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+|+.+ ++.+..|+.++.+.+ +++ ....+..+|...... ...+.-+++||.|.++..+.||
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQTL--SLPDGATVADALAAY----GAR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEEE--ECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 45544 456678999888765 333 335667788776432 2344458899999998887776
No 186
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=78.79 E-value=14 Score=27.25 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=44.1
Q ss_pred CCcEEEEEEcCC-CcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 294 GGKTITLDVQPY-NTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 294 ~g~~~~l~v~~~-~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+|+.+++ ... .||.+|-+ ..++++...-+-.+|..+..+ ...++-+++||.|.++--+.||
T Consensus 6 NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 5665544 444 57777654 467888888888999888654 3566679999999998777665
No 187
>KOG4261 consensus Talin [Cytoskeleton]
Probab=78.78 E-value=4 Score=43.85 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=81.2
Q ss_pred CcEEEEeecccccHHHHHHHHHHHhCCC---CCceeEEec------CeecCCCccccccCCCCCcccccCCCCcEEEEEe
Q 036691 222 EEIVRLEVEVLIVVRDVKEIVANIIDLS---LGNQDLFYA------GTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKT 292 (426)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~~ip---~~~q~L~~~------g~~L~d~~tL~~y~I~~~~~l~l~~~~m~i~v~~ 292 (426)
+-..++..+|+++|.+--+.|++++.-. +....|+.. |--|+.+++|.+|-+.+++++.--...-.+.|+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r~lkvrm 91 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQRPLKVRM 91 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcccceeee
Confidence 4456899999999999988888886321 333444432 4558999999999999999998744444577899
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC
Q 036691 293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPL 323 (426)
Q Consensus 293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~ 323 (426)
++|..-++.++.+.+|.+|.--|+.+-||--
T Consensus 92 ldg~vkti~vd~sq~v~~L~~~ic~~igItn 122 (1003)
T KOG4261|consen 92 LDGAVKTIMVDDSQPVSQLMMTICNKIGITN 122 (1003)
T ss_pred cccccceeeecccccHHHHHHHHHhccCccc
Confidence 9999999999999999999999999888753
No 188
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=78.09 E-value=11 Score=27.47 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhC---CCCCceEEE-eCCeEeecccccccccccccCcEEEEEeec
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEG---IQSDQFTLV-YDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~-~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
+|+... ++..+....--+.++--+..| -|++.-.|- -+|..|+- ++.+.|||+.++-++.|.++.
T Consensus 4 NGqPv~-VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~-~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQ-VEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDV-NKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCcee-eecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeec-cchhhhccccccceEEEEeec
Confidence 677777 888888877777766655554 577777775 46778877 999999999999999887663
No 189
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=76.55 E-value=1.1 Score=43.37 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=49.2
Q ss_pred CceeEEEEcCCCce--eEEEEEcCCCcHHHHHHHHHHHhC--CCCCceEEEeCCeEeecccccccccccc--cCcEEEE
Q 036691 60 SEMKLFVKIPTNQT--ATVVEAMPYHTVQNIKTMIQVKEG--IQSDQFTLVYDGKLLKEDTATMTSMNIK--SESIIHL 132 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~--~~~~~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~~tL~~y~I~--~~s~i~l 132 (426)
-...++||..+.+- .. +..+..-||++||..++.-.- --+.+|||+|.|+.|.| ...++|.-++ ..-+.||
T Consensus 8 ~~v~lliks~Nq~y~dl~-i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld-~qcl~d~lrkq~k~Hv~hl 84 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLS-ISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLD-HQCLTDWLRKQVKEHVKHL 84 (391)
T ss_pred cceEEEecCCCcccccee-eehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhcccccc-chhHHHHHHHHHHHHHHHH
Confidence 34567788765443 33 444556799999998887642 23568999999999999 8888887554 2334444
No 190
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=75.79 E-value=13 Score=28.12 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=36.0
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA 331 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 331 (426)
.+.++. +|.+..+.+.++.|..+|+.+|+.+.+++.....|-|.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 345555 67889999999999999999999999988766666664
No 191
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=75.61 E-value=12 Score=39.29 Aligned_cols=75 Identities=24% Similarity=0.398 Sum_probs=48.4
Q ss_pred CcEEEEEec--CCcEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE--c--Ce-ecCCC-----------
Q 036691 285 PFQIFVKTW--GGKTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF--A--GK-RLFEN----------- 338 (426)
Q Consensus 285 ~m~i~v~~~--~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~--~--gk-~L~d~----------- 338 (426)
++.+.|-.. .+..+.+.|-..|||.++|++|-+. .+.|. ++.-|-| + |. .|.|.
T Consensus 189 ~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wk 268 (539)
T PF08337_consen 189 TLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWK 268 (539)
T ss_dssp EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEE
T ss_pred EEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCce
Confidence 455554433 2356889999999999999999875 34443 3444533 2 22 55543
Q ss_pred --CccccCCCCCCCEEEEEeecC
Q 036691 339 --HVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 339 --~tL~~y~I~~~~ti~l~~~~~ 359 (426)
.||++|+|.+|+++-|+.+..
T Consensus 269 rLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 269 RLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp E--BHHHHT--TTEEEEEEES--
T ss_pred EeccHhhcCCCCCceEEEeeccc
Confidence 589999999999999998864
No 192
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=74.77 E-value=15 Score=26.65 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=42.1
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
++++.+.||.+|.+++ +++++.-.+..+|+.... ...+++-+++|+.+.++--..||
T Consensus 9 ~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~--~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 9 REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPR--SEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH--HHcCceecCCCCEEEEEEeccCC
Confidence 5667788999888764 577788888889988754 34555678999999985554443
No 193
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=74.71 E-value=12 Score=28.53 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=43.9
Q ss_pred eeEEEEcC------CC-ceeEEEEEcCCCcHHHHHHHHHHHhC-CCC--CceEEEeCCeEeecccccccccccccCcEEE
Q 036691 62 MKLFVKIP------TN-QTATVVEAMPYHTVQNIKTMIQVKEG-IQS--DQFTLVYDGKLLKEDTATMTSMNIKSESIIH 131 (426)
Q Consensus 62 m~i~Vk~~------~g-~~~~~~~v~~~~tV~~lK~~I~~~~g-ip~--~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~ 131 (426)
|.|.|+.. .| .... ++++.+.||.+|.+.+..+.. +.. ..-.+..+|+...+ ++-+++|++|.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~-~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~------~~~l~dgDeVa 74 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMT-LELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE------SAALKDGDELA 74 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEE-EECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC------CcCcCCCCEEE
Confidence 55666654 34 3445 788889999999999976641 111 11234456665433 45678899998
Q ss_pred EEeeccce
Q 036691 132 LVFCPKEI 139 (426)
Q Consensus 132 l~~~~~~g 139 (426)
+.-...||
T Consensus 75 i~PpvsGG 82 (82)
T PLN02799 75 IIPPISGG 82 (82)
T ss_pred EeCCCCCC
Confidence 85544443
No 194
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=74.64 E-value=12 Score=28.24 Aligned_cols=45 Identities=13% Similarity=0.322 Sum_probs=36.7
Q ss_pred eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC
Q 036691 63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG 109 (426)
Q Consensus 63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 109 (426)
.+.++. +|.+.. +.++++.|-.+|+.+|+++.+.+.....|-|..
T Consensus 3 ~vK~~~-~~~~~~-~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRR-LSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEE-EEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 455555 667778 999999999999999999999877777777764
No 195
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=73.95 E-value=11 Score=29.06 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=33.1
Q ss_pred cCCCcEEEEeecccccHHHHHHHHHHHhCCCC-CceeEEec
Q 036691 219 TPIEEIVRLEVEVLIVVRDVKEIVANIIDLSL-GNQDLFYA 258 (426)
Q Consensus 219 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~-~~q~L~~~ 258 (426)
..+|..+.+.+.++.+..+|++.|.+++++.. ....|.|-
T Consensus 6 ~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 6 TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 36788899999999999999999999999864 45556664
No 196
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=73.88 E-value=13 Score=28.12 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=40.2
Q ss_pred EEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCC
Q 036691 289 FVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFE 337 (426)
Q Consensus 289 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d 337 (426)
.|-.++|+..++-+.|++|++++-+..+++.++.+....|-..-..++|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~ 51 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMEN 51 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCC
Confidence 4567899999999999999999999999999999998877443333333
No 197
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=73.37 E-value=12 Score=28.12 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=39.0
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe
Q 036691 290 VKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK 333 (426)
Q Consensus 290 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk 333 (426)
|-.++|.+..+.+.|+.||.+.-.++.++.|++++..-++.-|+
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 44678999999999999999999999999999999988877663
No 198
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=73.07 E-value=17 Score=28.12 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=31.2
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCC-cceEEEE
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPL-HLQSIVF 330 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~ 330 (426)
+|.++.+.+.|+.+..+|+++|+++.++.. ....|-|
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY 45 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY 45 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 678999999999999999999999999864 4455555
No 199
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=72.85 E-value=4.5 Score=39.73 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=58.0
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecc-cccccccccccCcEEEEEeeccc
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKED-TATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~-~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
..+.++ +.|..+-....++..++...|++.+..-|+|+++.+.++ ...+..||.+.++++.+.-+.++
T Consensus 11 ~~~~~~-i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 11 FEKKFP-IPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred ceeeec-cccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 445566 889999999999999999999999999999999999874 56899999999999987555443
No 200
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=72.80 E-value=16 Score=27.44 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=41.5
Q ss_pred eEEEEEcCCCcHHHHHHHHHHHhCC----CCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 74 ATVVEAMPYHTVQNIKTMIQVKEGI----QSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 74 ~~~~~v~~~~tV~~lK~~I~~~~gi----p~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
.. ++++.+.||.++.+.+....+- ......+..+|+.... ++-+++|+.|.+.-...||
T Consensus 18 ~~-~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~------~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 18 EE-LELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL------DTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred EE-EECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC------CcccCCCCEEEEeCCCCCC
Confidence 45 7777789999999999887532 2234455667776653 4568889999986655554
No 201
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=71.47 E-value=11 Score=29.96 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=23.7
Q ss_pred EEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691 327 SIVFAGKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 327 ~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
.|-|+||+|..+.+|++| +..+..-.+++++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEe
Confidence 578999999999999999 5555544555554
No 202
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=71.35 E-value=13 Score=27.71 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=35.7
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG 109 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 109 (426)
+.|..++|+... +.+.|+.||.++-.++-++.|+.++.-.+...|
T Consensus 3 ~~v~LP~~q~t~-V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTV-VQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEE-EEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEE-EEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456777899888 999999999999999999999999887665444
No 203
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=71.13 E-value=9 Score=38.08 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=53.4
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCC-CCcceEEE--EcCeecCC-CCccccCCCCCCCEE
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQT-PLHLQSIV--FAGKRLFE-NHVLARYNIQKHSTL 352 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~L~--~~gk~L~d-~~tL~~y~I~~~~ti 352 (426)
.+.=.|-|+..+|+.....++.+.||.+|+.-|.....- +...+.|+ |--|.|.| +.||.+.|+.+-..+
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 344568889999999999999999999999999886543 33345553 34488865 679999999876443
No 204
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=69.21 E-value=24 Score=25.51 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=43.1
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
+|+. ++++.+.|+.+|.+. .+++++...+..+|+.... ....++-+++|+.+.++.-..||
T Consensus 4 Ng~~---~~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~--~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEP---VEVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPR--SEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeE---EEcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCH--HHcCceecCCCCEEEEEEeccCC
Confidence 4555 456677889988875 4677777777788888743 33556779999999985554443
No 205
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=68.36 E-value=14 Score=27.89 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=40.5
Q ss_pred eecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccC
Q 036691 144 VKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLED 191 (426)
Q Consensus 144 Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d 191 (426)
|-.++|+..++.+.+++|+.++-+...++.++.|+...|...-..++|
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~ 51 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMEN 51 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCC
Confidence 446789999999999999999999999999999998887775444444
No 206
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=68.33 E-value=14 Score=29.37 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=38.9
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe-------ecCCC---Ccc--ccCCCCCCCEEEEEeecCCC
Q 036691 300 LDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK-------RLFEN---HVL--ARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 300 l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk-------~L~d~---~tL--~~y~I~~~~ti~l~~~~~gg 361 (426)
+++++..||.++-+.+.++. |...-+++..+. .|-++ +.+ .++-+++||.|.++..+.||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 34446779999999998876 333444443322 22222 334 46789999999998877766
No 207
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=68.19 E-value=30 Score=25.09 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=40.8
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
+|+.+. + + ..|+.+|.+.+ +++++...+-.+++.+.- ....+.-+++|+.|.++--..||
T Consensus 6 Ng~~~~-~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~--~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQ-T--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK--EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEE-c--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH--HHcCccccCCCCEEEEEEeccCC
Confidence 566655 4 3 35888888754 666655566788887743 45667889999999985554443
No 208
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=68.18 E-value=1e+02 Score=28.70 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=89.2
Q ss_pred ccccccCcEEEEEeeccceeeeEeec-ccCc-EEEE--ecc-CCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCc
Q 036691 121 SMNIKSESIIHLVFCPKEILSIFVKA-ATGE-IVNL--EVK-HSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTL 195 (426)
Q Consensus 121 ~y~I~~~s~i~l~~~~~~g~~i~Vk~-~~gk-~~~i--~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL 195 (426)
+|-|..|++|.+.+--.......+.. .+|. .+++ .+. ...|++++.+.|..++.- +.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------~~-------- 62 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------GG-------- 62 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------cC--------
Confidence 47788899888765432222222222 2333 2222 344 488999999999876421 00
Q ss_pred ccccCCCcceeeec-cCcceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCc--ee-E--EecCee--------
Q 036691 196 AFYDMKDECLLEMF-PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGN--QD-L--FYAGTK-------- 261 (426)
Q Consensus 196 ~~y~I~~~s~i~l~-~~~~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~--q~-L--~~~g~~-------- 261 (426)
|-....-++.+. ..+..|+|-..-++.-.+.+.+..|+.++-+ ..-|+.+.. .. + ..+|+.
T Consensus 63 --~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~---~AGG~~~~~~~~~~i~~~~~g~~~~~~idl~ 137 (239)
T TIGR03028 63 --FVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLA---LAGGVTPDGADVITLVREREGKIFRKQIDFP 137 (239)
T ss_pred --cccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHH---HcCCCCccCCCeEEEEEecCCeEEEEEEEHH
Confidence 000011123333 2245676654444444566666777776433 333444321 11 1 123322
Q ss_pred --cCCCccccccCCCCCcccccCCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHH
Q 036691 262 --LEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKL 315 (426)
Q Consensus 262 --L~d~~tL~~y~I~~~~~l~l~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i 315 (426)
+.....-.++-+++|+.|++.+.+ .++|-..-++.-.+++.++.|+.+.-.+.
T Consensus 138 ~l~~~g~~~~ni~L~~GD~I~V~~~~-~v~v~G~V~~pg~~~~~~~~tl~~al~~a 192 (239)
T TIGR03028 138 ALFNPGGDNENILVAGGDIIYVDRAP-VFYIYGEVQRPGAYRLERNMTVMQALAQG 192 (239)
T ss_pred HHHhcCCCcCCcEEcCCCEEEEcCCc-cEEEEeEccCCeEEEeCCCCCHHHHHHhc
Confidence 223333456778899999974333 35554444455567778888876655444
No 209
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=66.53 E-value=42 Score=24.26 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=42.8
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+|+. ++++.+.|+.++-.. .|++++.--+..+|..+.- ....+.-+++|+.|.++.-..|
T Consensus 6 NG~~---~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r--~~~~~~~l~~gD~vei~~~vgG 65 (66)
T PRK05659 6 NGEP---RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPR--SQHASTALREGDVVEIVHALGG 65 (66)
T ss_pred CCeE---EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCH--HHcCcccCCCCCEEEEEEEecC
Confidence 4554 566778888887654 5788888888889887753 3455667899999998544433
No 210
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=65.94 E-value=35 Score=30.47 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=46.4
Q ss_pred eeeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCc-EEEEE---CC---eeccCCCCcccccCC
Q 036691 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD-HIMIY---EG---KKLEDSKTLAFYDMK 201 (426)
Q Consensus 140 ~~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~---~g---~~L~d~~tL~~y~I~ 201 (426)
..+.|..++|....+.++.+.||+++...+.++.|++... ..|.+ .+ .+++...++.+....
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 4566778899999999999999999999999999996543 33443 11 356666676666554
No 211
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=65.41 E-value=36 Score=24.78 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=41.5
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+|+. ++++++.|+.+|-+. .++++..--+..+|..+.... ...+ +++|+.|.++.-..|
T Consensus 6 NG~~---~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~--~~~~-L~~gD~ieIv~~VgG 64 (65)
T PRK05863 6 NEEQ---VEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD--WATK-LRDGARLEVVTAVQG 64 (65)
T ss_pred CCEE---EEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH--hhhh-cCCCCEEEEEeeccC
Confidence 4554 455677787776654 588888888999999775423 3345 999999998554444
No 212
>PRK07440 hypothetical protein; Provisional
Probab=65.31 E-value=54 Score=24.33 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=47.3
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
.|.|.| +|+. ++++...||.+|-+. .++++..--+-.+|..+.- ....++-+++|+.|.++.-..||
T Consensus 4 ~m~i~v---NG~~---~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r--~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQV---NGET---RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHR--QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEE---CCEE---EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEEEecCC
Confidence 455555 4554 566778888887653 5788877788899998853 45677789999999985544443
No 213
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=64.60 E-value=15 Score=28.04 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA 331 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 331 (426)
-|+.+.+.+..+..+|..+|+++.+.|++.-.|-|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 456788999999999999999999999999999874
No 214
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=64.58 E-value=61 Score=24.72 Aligned_cols=35 Identities=31% Similarity=0.281 Sum_probs=29.8
Q ss_pred CcEEEEEEcCCCcHHHHHHHHHhHhCCC--CcceEEE
Q 036691 295 GKTITLDVQPYNTVQDVKVKLFDKLQTP--LHLQSIV 329 (426)
Q Consensus 295 g~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~L~ 329 (426)
+...++.|++++|..++-..+..+.++. +.+..|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6678899999999999999999999988 4555553
No 215
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=64.56 E-value=2.2 Score=41.18 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=0.0
Q ss_pred CceeEEEEcCCCceeEEEEEc---C--CCcHHHHHHHHHH----------HhCCCCCceE-----EEeCCeEeecccccc
Q 036691 60 SEMKLFVKIPTNQTATVVEAM---P--YHTVQNIKTMIQV----------KEGIQSDQFT-----LVYDGKLLKEDTATM 119 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~---~--~~tV~~lK~~I~~----------~~gip~~~q~-----L~~~g~~L~d~~~tL 119 (426)
..+.|.+|.+.+..+. +.++ + +.+|.++|..+++ ++++|.+..+ |+|+-+.+.| .+||
T Consensus 77 ~sItV~Lks~rnp~l~-i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~-~ktl 154 (309)
T PF12754_consen 77 KSITVHLKSLRNPPLD-ISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGD-SKTL 154 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEeecCCCCCce-eEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCC-cCcH
Confidence 4566666766554432 2222 2 6899999999999 8999999888 9999999988 9999
Q ss_pred ccccc
Q 036691 120 TSMNI 124 (426)
Q Consensus 120 ~~y~I 124 (426)
.+..=
T Consensus 155 ~e~l~ 159 (309)
T PF12754_consen 155 AEVLA 159 (309)
T ss_dssp -----
T ss_pred HHHHh
Confidence 88753
No 216
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=64.12 E-value=45 Score=26.03 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=33.6
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF 330 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 330 (426)
|.|.|.. .|.++.+.+.++-+..+|..+|.++.++. ....+-|
T Consensus 3 ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKy 45 (86)
T cd06408 3 IRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKM 45 (86)
T ss_pred EEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEE
Confidence 4455553 67899999999999999999999999985 3334444
No 217
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=63.47 E-value=19 Score=37.87 Aligned_cols=65 Identities=17% Similarity=0.329 Sum_probs=42.3
Q ss_pred ceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCe-Eeeccc------------cccccccccc
Q 036691 72 QTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGK-LLKEDT------------ATMTSMNIKS 126 (426)
Q Consensus 72 ~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~d~~------------~tL~~y~I~~ 126 (426)
..+. +.|-..|||.++|++|-+.. +.| +++.-|-+ +|+ .|.|.+ .||++|+|.+
T Consensus 202 ~~i~-VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 202 EEIP-VKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp TCEE-EEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred ceEE-EEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3456 88889999999999998763 443 34444543 223 455522 4799999999
Q ss_pred CcEEEEEeecc
Q 036691 127 ESIIHLVFCPK 137 (426)
Q Consensus 127 ~s~i~l~~~~~ 137 (426)
|+++.|+.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999977754
No 218
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=62.89 E-value=28 Score=26.22 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=37.6
Q ss_pred EEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe
Q 036691 66 VKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK 110 (426)
Q Consensus 66 Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~ 110 (426)
|-.++|+... +.+.|+.||.++-.+.-++.|++++---++..|.
T Consensus 4 V~LPdg~~T~-V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTV-VPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEE-EEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 3356888887 9999999999999999999999988888776664
No 219
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=62.11 E-value=17 Score=39.03 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=38.5
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeec
Q 036691 293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRL 335 (426)
Q Consensus 293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L 335 (426)
.++..+.+-++++.|+..+++.|...+|+|...|-|+|.|...
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 3567888999999999999999999999999999999986544
No 220
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=62.06 E-value=16 Score=28.49 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=37.3
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI 328 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L 328 (426)
.+-|-.++|.++++++..+++.+++-+.++.+.|+|.+-...
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 456667789999999999999999999999999999987653
No 221
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=61.71 E-value=14 Score=28.77 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=35.1
Q ss_pred eeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCc
Q 036691 141 SIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179 (426)
Q Consensus 141 ~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~ 179 (426)
.+.|..++|.++++.+..+++.+++-+.+..+.|+|.+-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 456677899999999999999999999999999999874
No 222
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=60.34 E-value=38 Score=25.55 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=34.8
Q ss_pred EEEEEecCCcEEE-EEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc
Q 036691 287 QIFVKTWGGKTIT-LDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA 331 (426)
Q Consensus 287 ~i~v~~~~g~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 331 (426)
.+.+.. .|.... +.+.++.|..+|+.+|+.+.+.+.....|.|.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 3 RVKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 344554 445555 89999999999999999999999777788774
No 223
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=60.10 E-value=38 Score=25.54 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=34.9
Q ss_pred eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC
Q 036691 63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG 109 (426)
Q Consensus 63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 109 (426)
.+.+...++.... +.++++.|..+|+.+|+++.+.+.....|.|..
T Consensus 3 ~vK~~~~~~~~~~-~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVRYGGDIRRI-ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEETTEEEEE-EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEEECCeeEEE-EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 4445543333344 788899999999999999999997888888853
No 224
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=60.05 E-value=14 Score=36.86 Aligned_cols=70 Identities=17% Similarity=0.320 Sum_probs=55.6
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhC-CCCCceEEE--eCCeEeecccccccccccccCcEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG-IQSDQFTLV--YDGKLLKEDTATMTSMNIKSESII 130 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~g-ip~~~q~L~--~~g~~L~d~~~tL~~y~I~~~s~i 130 (426)
.+-.|-|+..+|+.+. .....+.||.+++..|..... -+...+.|+ |--+.|.|++.||++-|+.|-..+
T Consensus 304 PtTsIQIRLanG~RlV-~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLV-LKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceee-eeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 3445777788898888 888999999999999998754 445566665 667999998999999999876544
No 225
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=59.44 E-value=70 Score=23.70 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=44.0
Q ss_pred CceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 71 NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 71 g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
|+. ++++...|+.+|-+. .|++++.--...+|..... .-..+.-+++++.|.++.-..|
T Consensus 9 g~~---~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr--~~~~~~~l~~gD~ievv~~v~G 67 (68)
T COG2104 9 GKE---VEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPR--SQWADTILKEGDRIEVVRVVGG 67 (68)
T ss_pred CEE---EEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccc--hhhhhccccCCCEEEEEEeecC
Confidence 554 566666899988765 7888888888999998863 3456778889999988544443
No 226
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=58.95 E-value=32 Score=26.30 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=33.0
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC
Q 036691 73 TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG 109 (426)
Q Consensus 73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 109 (426)
|+. +.++++.+..+|..+|.++...|++.-.|.|.-
T Consensus 8 TVa-i~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVA-LRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEE-EEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 677 899999999999999999999999999998853
No 227
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=56.59 E-value=18 Score=38.93 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=37.2
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeE
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKL 111 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~ 111 (426)
+...+. +.++++.|+..++++|...+|+|...|.|+|.|..
T Consensus 323 ~~~~~~-~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 323 QATSHE-YYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred cceEEE-EecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 566677 99999999999999999999999999999998763
No 228
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=56.50 E-value=59 Score=24.50 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=40.9
Q ss_pred Cce-eEEEEEcCC-CcHHHHHHHHHHHhC-CC--CCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 71 NQT-ATVVEAMPY-HTVQNIKTMIQVKEG-IQ--SDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 71 g~~-~~~~~v~~~-~tV~~lK~~I~~~~g-ip--~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|+. .. ++++.+ .||.+|.+.+.++.+ +. .....+..+|+...+ +.-+++|++|.+.-...||
T Consensus 14 g~~~~~-~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~------~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 14 GTDEET-LELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD------DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred CCCeEE-EECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC------CcCcCCCCEEEEeCCCCCC
Confidence 443 35 788876 899999999988863 11 122345566666544 4577889999885555544
No 229
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=56.37 E-value=58 Score=25.41 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=35.0
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK 110 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~ 110 (426)
|+|.|.. .|.++. +.|+++.+-.+|..+|.++.|+. ....+-|...
T Consensus 3 ikVKv~~-~~Dv~~-i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHA-QDDTRY-IMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEe-cCcEEE-EEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 4555554 677888 99999999999999999999984 3444445443
No 230
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=56.20 E-value=76 Score=23.05 Aligned_cols=61 Identities=10% Similarity=0.057 Sum_probs=41.6
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
+|+. ++++.+.|+.+|-+. .+++...-.+-.+++.+.- ...+++-+++|+.|.++.-..||
T Consensus 6 Ng~~---~~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r--~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQP---MQCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR--EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeE---EEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh--HHcCccccCCCCEEEEEEEccCC
Confidence 4555 456777889888865 4555555667788888753 34566678999999985554443
No 231
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=55.90 E-value=82 Score=23.36 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=45.1
Q ss_pred CcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 295 GKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 295 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+. +++....|+++|-+ ..|++++.--...+|..+..+ -..++-+++||.|.++--+.||
T Consensus 9 g~~--~e~~~~~tv~dLL~----~l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 9 GKE--VEIAEGTTVADLLA----QLGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred CEE--EEcCCCCcHHHHHH----HhCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 454 45566689998864 468888888999999988644 3466678899999888777665
No 232
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=52.80 E-value=83 Score=22.51 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=36.4
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
++++++.|+.++-+.+ +++ ....+..+|+.... ....+.-+++|++|.++-...||
T Consensus 10 ~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~--~~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 10 LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVAR--TQHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCc--hhcccccCCCCCEEEEEeeccCC
Confidence 5667788999888764 443 23455677776642 23445568899999985554443
No 233
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=52.70 E-value=22 Score=38.13 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=101.6
Q ss_pred CccCCCCCHHHHHHHHHHHhCCCcccceEE--e--cCeecc--CCC-cccCCCCCCCeEEEEEec-CCceeEEEEcC---
Q 036691 1 MKVKKSEPIKNLKAMIHVKEGISEDICDLF--F--AGDRLE--AGR-LVDYGIRNNSTLHFLHQN-LSEMKLFVKIP--- 69 (426)
Q Consensus 1 l~v~~~dtv~~~K~~i~~~~gi~~~~q~L~--~--~g~~L~--d~~-l~~y~i~~~~~l~l~~~~-~~~m~i~Vk~~--- 69 (426)
|.|+...+++.+|+.|++..+++.+.-+++ + ||..+. ++. |+..--..--||.|--.+ +++....|..+
T Consensus 881 l~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~~~~~~iTI~LG~~Lk~dE~~~KI~~L~~l 960 (1203)
T KOG4598|consen 881 LDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGAFQSCFITIKLGAPLKSDEKMMKIILLDIL 960 (1203)
T ss_pred eeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhhcccceEEEEecCcCCCCceeeEEEeehhh
Confidence 468889999999999999999998776664 2 355442 222 554322222334443222 34444444333
Q ss_pred CCc-----eeEEEEEcCCCcHHHHHHHHHHHh------CCC--CCceEEE-----eCCeEeecccccccccccccCcEEE
Q 036691 70 TNQ-----TATVVEAMPYHTVQNIKTMIQVKE------GIQ--SDQFTLV-----YDGKLLKEDTATMTSMNIKSESIIH 131 (426)
Q Consensus 70 ~g~-----~~~~~~v~~~~tV~~lK~~I~~~~------gip--~~~q~L~-----~~g~~L~d~~~tL~~y~I~~~s~i~ 131 (426)
... .....-+..++||++.|..+-.+. +.. ....|+. --|+.+.|++.++.|.+-.-.+-..
T Consensus 961 ~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~~~~~~ 1040 (1203)
T KOG4598|consen 961 ENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNWCSHLY 1040 (1203)
T ss_pred hccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhhHHHHH
Confidence 111 111134567899999987665442 222 2222222 2344555535555554410000000
Q ss_pred E--------EeeccceeeeEeecccCcEEEE----e-ccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccc
Q 036691 132 L--------VFCPKEILSIFVKAATGEIVNL----E-VKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFY 198 (426)
Q Consensus 132 l--------~~~~~~g~~i~Vk~~~gk~~~i----~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y 198 (426)
+ ..+.-.-..++|+-+.-.++.+ | +...+.+.+++..+.+..|||.++..++- ++.--.+.+++-.
T Consensus 1041 ~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~K-l~~~FPC~~IS~L 1119 (1203)
T KOG4598|consen 1041 LQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAITK-LKEFFPCKWISRL 1119 (1203)
T ss_pred HHHHHhhcccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhhh-cccCCCcchhhhh
Confidence 0 0011112344444443222221 1 23367889999999999999999865543 3333333334333
Q ss_pred cC
Q 036691 199 DM 200 (426)
Q Consensus 199 ~I 200 (426)
.|
T Consensus 1120 d~ 1121 (1203)
T KOG4598|consen 1120 DM 1121 (1203)
T ss_pred hh
Confidence 33
No 234
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=52.61 E-value=73 Score=32.96 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=54.6
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCC----C--CcceEE-EEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQT----P--LHLQSI-VFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi----p--~~~q~L-~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
.++|...+ +...+-+..+..|+++-..+-+..+- + ...-.| --+|..|+.++||.+.||.+|+++++..+..
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence 35666653 55777788888999999999887754 1 223344 3478899999999999999999999986543
No 235
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=52.15 E-value=58 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=32.8
Q ss_pred EEEEcCCCceeEEEEEc-CCCcHHHHHHHHHHHhCCCCCceEEEeCC
Q 036691 64 LFVKIPTNQTATVVEAM-PYHTVQNIKTMIQVKEGIQSDQFTLVYDG 109 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g 109 (426)
|.++. .|.... +.++ ++.|..+|+++|.++.+.+.....+-|..
T Consensus 3 vK~~~-~~~~~~-~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 3 VKVKY-GGEIRR-FVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEEe-cCCCEE-EEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 44444 356677 8888 89999999999999999876555555544
No 236
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=52.07 E-value=58 Score=24.33 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=31.8
Q ss_pred EEEEecCCcEEEEEEc-CCCcHHHHHHHHHhHhCCCCcceEEEE
Q 036691 288 IFVKTWGGKTITLDVQ-PYNTVQDVKVKLFDKLQTPLHLQSIVF 330 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~ 330 (426)
+.++. +|....+.+. ++.|..+|+++|+++.+.+.....+-|
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y 45 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKY 45 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEe
Confidence 34443 4678888888 899999999999999998864444444
No 237
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=51.88 E-value=41 Score=24.07 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=33.8
Q ss_pred ccccCCCCCHHHHHHHHHHhcCccceEEEecceecCCCccccccccCCCCeEEEe
Q 036691 371 DPSISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLADYGMDLSEKVVLV 425 (426)
Q Consensus 371 ~~~~~~~~~v~~~k~~i~~~~~~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~ 425 (426)
..+++...|..++++. +.++.-.+++||....++..|. .||.++++
T Consensus 9 ~~~~~~~~tl~~lr~~----~k~~~DI~I~NGF~~~~d~~L~-----e~D~v~~I 54 (57)
T PF14453_consen 9 EIETEENTTLFELRKE----SKPDADIVILNGFPTKEDIELK-----EGDEVFLI 54 (57)
T ss_pred EEEcCCCcCHHHHHHh----hCCCCCEEEEcCcccCCccccC-----CCCEEEEE
Confidence 3456677788888766 4556667899999988876654 78888875
No 238
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=51.68 E-value=1.1e+02 Score=23.49 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=40.1
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHHhC-----CCC------CceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 73 TATVVEAMPYHTVQNIKTMIQVKEG-----IQS------DQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 73 ~~~~~~v~~~~tV~~lK~~I~~~~g-----ip~------~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
... ++++ ..||.++.+.+.++.. +-. ....+..+|+.... +.. .-+++|+.|.+.-...||
T Consensus 17 ~~~-v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~-~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEE-IEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDW-GLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEE-EEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCc-cCC---CCCCCCCEEEEeCCCcCC
Confidence 455 7776 8899999999988753 101 12445567776654 221 568899999986655554
No 239
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.52 E-value=32 Score=33.56 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=43.6
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEe---CCeEe----ecccccccccccccCcEEEE
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY---DGKLL----KEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L----~d~~~tL~~y~I~~~s~i~l 132 (426)
..|.-.-||.++|..+..+-|+.+...+|+| .|+.- .|.+..|..|+|++|+.+.+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 4555677999999999999999999999987 34421 13366788888999988765
No 240
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=51.51 E-value=1e+02 Score=23.33 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=35.9
Q ss_pred EEEcC-CCcHHHHHHHHHhHhC-----CCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 300 LDVQP-YNTVQDVKVKLFDKLQ-----TPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 300 l~v~~-~~tV~~lK~~i~~~~g-----ip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+++++ ..||.+|++.+.++.. ......+..-++..-. .+.-+++||.|-+...+.||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEeCCCCCC
Confidence 34443 4799999999988752 1112223333443222 24468999999888887776
No 241
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=51.39 E-value=28 Score=27.17 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=29.9
Q ss_pred EEEc-CCCcHHHHHHHHHh-HhCCCCcce----EEEEcCee----cCCCCccccCCCCCCCEEEEE
Q 036691 300 LDVQ-PYNTVQDVKVKLFD-KLQTPLHLQ----SIVFAGKR----LFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 300 l~v~-~~~tV~~lK~~i~~-~~gip~~~q----~L~~~gk~----L~d~~tL~~y~I~~~~ti~l~ 355 (426)
+.++ ...|+.+|-.+|.. +.|+..... .++|..-. -...++|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 35589999998754 566555333 33333322 122478999999999998663
No 242
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=50.57 E-value=1.2e+02 Score=23.54 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=47.5
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
.|+|.| +|+. ++++.+.||.+|-+. .++++..--+-.+|..+. ....+++-+++|+.|.++.-..||
T Consensus 18 ~m~I~V---NG~~---~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp--r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 18 LITISI---NDQS---IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP--RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred eEEEEE---CCeE---EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC--HHHcCcccCCCCCEEEEEEEecCC
Confidence 444544 5664 556778888877664 478877777789999884 356778889999999985544443
No 243
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=50.37 E-value=55 Score=26.70 Aligned_cols=52 Identities=10% Similarity=0.214 Sum_probs=38.6
Q ss_pred EEEEEeeccceeeeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECC
Q 036691 129 IIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEG 186 (426)
Q Consensus 129 ~i~l~~~~~~g~~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 186 (426)
.+.+.+|.-|+..+. |.-...|++++|++.+-..|.+.++++...+.+.|-+
T Consensus 30 kV~i~l~aiG~~Pil------K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN 81 (116)
T KOG3439|consen 30 KVQIRLRAIGDAPIL------KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVN 81 (116)
T ss_pred eEEEEEeccCCCcce------ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEc
Confidence 344445544544443 3345778899999999999999999999999988844
No 244
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=50.21 E-value=16 Score=32.39 Aligned_cols=82 Identities=17% Similarity=0.324 Sum_probs=45.1
Q ss_pred ceEEEeCCeEeecccccccccccccCcEEEEEeeccceeeeEeec-------------ccCcEEEEeccCCCc-------
Q 036691 102 QFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKA-------------ATGEIVNLEVKHSFA------- 161 (426)
Q Consensus 102 ~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~i~Vk~-------------~~gk~~~i~v~~~~t------- 161 (426)
+.++-|.|.++.. -+....+||+.+|.+.. +|+|.+.+.. .+...+.+-|+..|.
T Consensus 7 ~~~i~YDGsqi~s-lWAy~~fgi~gdSIV~F----rG~c~V~~e~MvDleDv~~~~~I~S~dmlhFIvEhFD~~dl~~~~ 81 (183)
T PF04017_consen 7 DERIDYDGSQISS-LWAYRNFGIQGDSIVVF----RGPCDVKIEHMVDLEDVREEEEIKSDDMLHFIVEHFDSPDLKLAY 81 (183)
T ss_dssp SSE--BSSGGGST-THHHHHH---SSEEEEE----EEEEE--GGG--BHHHHHTT---EEEEEEEEEEEE-S---HHHHH
T ss_pred CCCcCcChhhhhH-HHHHHhcCCCCCeEEEE----EcCccccHHHcccHHHhcCCCcccCccceEEEEeeCCCCcHHHHH
Confidence 3477899999999 99999999999998776 5667665422 134455666666666
Q ss_pred ------HHHHHHHHhhhhCCCCCc--EEEEECCeec
Q 036691 162 ------IRDVKAIVGSVVGVSAAD--HIMIYEGKKL 189 (426)
Q Consensus 162 ------V~~lK~~I~~~~gip~~~--q~L~~~g~~L 189 (426)
|.-+|+.+.+. |+...+ =-|.++|+.|
T Consensus 82 ~rQRLlv~i~kE~L~~~-gv~~~R~GDDLy~~~~KL 116 (183)
T PF04017_consen 82 LRQRLLVAIIKEVLEEY-GVKLRREGDDLYVNGRKL 116 (183)
T ss_dssp HHHHHHHHHHHHHHHTT-T--EEEETTEEEETTEE-
T ss_pred HHHHHHHHHHHHHHHhc-CCceeecccceeECCCEE
Confidence 34455555554 655432 2355666665
No 245
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=49.99 E-value=97 Score=22.74 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=46.5
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHHhCC--CCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 73 TATVVEAMPYHTVQNIKTMIQVKEGI--QSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 73 ~~~~~~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
... ..+....||.+|.+.+..+..- ....-.+..+|+...+ ...+.-+++|++|.+.-...||
T Consensus 13 ~~~-~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~---~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEE-IEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD---DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEE-EEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG---GTTTSBEETTEEEEEEESTSTS
T ss_pred CeE-EecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC---ccCCcCcCCCCEEEEECCCCCC
Confidence 445 7888999999999999887531 2355667778877654 3667788999999986655554
No 246
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=49.92 E-value=53 Score=32.27 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=50.4
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
|+|.| +|+.+ ++..+.||.+|-+. .+++++...+..||..+.- ....++-+++||.|.++--+.||..
T Consensus 1 M~I~V---NGk~~--el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 1 MRIRL---NGEPR--QVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CEEEE---CCEEE--ecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCCCC
Confidence 44544 56654 45667788877654 5889999999999998843 3466778999999999988877744
No 247
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=49.65 E-value=56 Score=25.15 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=45.0
Q ss_pred cCCceeEEEEcC-CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe-CCeEeecccccccccccccCcEEEEE
Q 036691 58 NLSEMKLFVKIP-TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY-DGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 58 ~~~~m~i~Vk~~-~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
+.++..-|+... .+..+. +..++..||+++=+. .|+|..+--+++ +|+.-.- +|-+++|+.+.+.
T Consensus 8 f~~~L~~flp~~~r~~~~~-~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~------~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 8 FYAELNDFLPPERRGGPFT-HPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF------DYRLKDGDRVAVY 74 (81)
T ss_pred EchHHhhhcChhhcCCceE-EecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC------cccCCCCCEEEEE
Confidence 334444444322 245677 888899898887654 799999987775 7776554 5788899998863
No 248
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.64 E-value=21 Score=34.69 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=41.3
Q ss_pred ccCCCcHHHHHHHHhhhhCCCCCcEEEEE---CCee-----ccCCCCcccccCCCcceeee
Q 036691 156 VKHSFAIRDVKAIVGSVVGVSAADHIMIY---EGKK-----LEDSKTLAFYDMKDECLLEM 208 (426)
Q Consensus 156 v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~-----L~d~~tL~~y~I~~~s~i~l 208 (426)
+.-.-||-+++..+..+-|+.+..++|.+ +|+. ++.+..|-.|+|++|+.+-+
T Consensus 354 I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 354 ICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred EEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 44467999999999999999999999998 4443 45556677777888877654
No 249
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=49.62 E-value=1e+02 Score=22.57 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=42.0
Q ss_pred CCceeEEEEEcCC-CcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 70 TNQTATVVEAMPY-HTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 70 ~g~~~~~~~v~~~-~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+|+. ++++.+ .||.+|-+. .|+++..--+-.+|..+.- ...+++-+++|+.|.++.-..|
T Consensus 6 NG~~---~~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r--~~w~~~~L~~gD~iEIv~~VgG 66 (67)
T PRK07696 6 NGNQ---IEVPESVKTVAELLTH----LELDNKIVVVERNKDILQK--DDHTDTSVFDGDQIEIVTFVGG 66 (67)
T ss_pred CCEE---EEcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEEEecC
Confidence 4654 455555 577776653 6788887778899998854 4567778999999998554443
No 250
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=49.37 E-value=75 Score=24.42 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=41.6
Q ss_pred CcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE-cCeecCCCCccccCCCCCCCEEEEEe
Q 036691 295 GKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF-AGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 295 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
+..+.+.+.+..||.++-+ ..|+|..+--+++ +|+...-+ |-+++|+.|.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 4677889999999988764 4799999998765 77766544 7778999998754
No 251
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=49.09 E-value=73 Score=24.30 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=28.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCC--CCcceEEE
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKLQT--PLHLQSIV 329 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~L~ 329 (426)
..++.|++++|+.++-+.+..+.++ .+.+..|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 7889999999999999999999999 44455563
No 252
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=48.42 E-value=55 Score=25.24 Aligned_cols=37 Identities=19% Similarity=0.093 Sum_probs=30.5
Q ss_pred cCCCcEEEEeecc--cccHHHHHHHHHHHhCCCCCceeEEe
Q 036691 219 TPIEEIVRLEVEV--LIVVRDVKEIVANIIDLSLGNQDLFY 257 (426)
Q Consensus 219 ~~~g~~~~l~v~~--~~tV~~lK~~I~~~~~ip~~~q~L~~ 257 (426)
+.+|.+..+.+++ +.+-.+|++.+...++++ ...|.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 4678888899988 669999999999999998 444444
No 253
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=48.26 E-value=59 Score=26.51 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=40.8
Q ss_pred CcEEEEEecCC----cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecC
Q 036691 285 PFQIFVKTWGG----KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLF 336 (426)
Q Consensus 285 ~m~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~ 336 (426)
.++|..+...+ +.-.+.|++++|++.+...+....+++..++-++|=..-..
T Consensus 30 kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFA 85 (116)
T KOG3439|consen 30 KVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFA 85 (116)
T ss_pred eEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccC
Confidence 34555555433 45568999999999999999999999999999988666553
No 254
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=47.79 E-value=1.2e+02 Score=24.50 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=47.9
Q ss_pred CcEEEEEecC-CcEEEEEEcCCCcHHHHHHHHHhH------hCCCCc-ceEEEEcCe--ecCCCCccccCC-----CCCC
Q 036691 285 PFQIFVKTWG-GKTITLDVQPYNTVQDVKVKLFDK------LQTPLH-LQSIVFAGK--RLFENHVLARYN-----IQKH 349 (426)
Q Consensus 285 ~m~i~v~~~~-g~~~~l~v~~~~tV~~lK~~i~~~------~gip~~-~q~L~~~gk--~L~d~~tL~~y~-----I~~~ 349 (426)
.+.|.|...+ ...+++.+++++|+.++.+.+-.+ ..-+++ +..|--.|+ -|..+..|.+|. ++.|
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~ 96 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNG 96 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcC
Confidence 3445554433 367999999999999999988776 122233 555644442 235566777763 5678
Q ss_pred CEEEEEeec
Q 036691 350 STLHMVLAP 358 (426)
Q Consensus 350 ~ti~l~~~~ 358 (426)
..++|++..
T Consensus 97 ~~~~L~L~~ 105 (108)
T smart00144 97 REPHLVLMT 105 (108)
T ss_pred CCceEEEEe
Confidence 888887753
No 255
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=47.54 E-value=37 Score=28.26 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=39.0
Q ss_pred EEEcC-CCcHHHHHHHHHHHh----CCCC------CceEEEe----------------C-CeEe---ecccccccccccc
Q 036691 77 VEAMP-YHTVQNIKTMIQVKE----GIQS------DQFTLVY----------------D-GKLL---KEDTATMTSMNIK 125 (426)
Q Consensus 77 ~~v~~-~~tV~~lK~~I~~~~----gip~------~~q~L~~----------------~-g~~L---~d~~~tL~~y~I~ 125 (426)
-.|+. +.||.+|++.+.+.- |+|| +..++++ . +..| ++ +.+|.++||.
T Consensus 20 ~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~-~~tL~~~gv~ 98 (122)
T PF10209_consen 20 HNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDD-DKTLKELGVE 98 (122)
T ss_pred ecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCC-CCcHHHcCCC
Confidence 35776 889999998877663 4543 2333332 1 2456 44 8899999999
Q ss_pred cCcEEEEEe
Q 036691 126 SESIIHLVF 134 (426)
Q Consensus 126 ~~s~i~l~~ 134 (426)
++..|.+.-
T Consensus 99 nETEiSfF~ 107 (122)
T PF10209_consen 99 NETEISFFN 107 (122)
T ss_pred ccceeeeeC
Confidence 999998743
No 256
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=46.98 E-value=3.2e+02 Score=27.56 Aligned_cols=171 Identities=12% Similarity=0.100 Sum_probs=93.6
Q ss_pred cccccccCcEEEEEeeccceeee------------EeecccCcEE-EE--ecc-CCCcHHHHHHHHhhhhCCCCCcEEEE
Q 036691 120 TSMNIKSESIIHLVFCPKEILSI------------FVKAATGEIV-NL--EVK-HSFAIRDVKAIVGSVVGVSAADHIMI 183 (426)
Q Consensus 120 ~~y~I~~~s~i~l~~~~~~g~~i------------~Vk~~~gk~~-~i--~v~-~~~tV~~lK~~I~~~~gip~~~q~L~ 183 (426)
.+|-|..||+|.+.+--...... +.-..+|.-. ++ .+. ...|+.++.+.|.+++.
T Consensus 83 ~~Y~igpGDvL~I~V~~~peL~~~~~~~~~~~~~g~~V~~dG~I~~P~vG~V~vaG~T~~e~~~~I~~~L~--------- 153 (379)
T PRK15078 83 YEYRVGPGDVLNVTVWDHPELTTPAGQYRSASDTGNWVHADGTIFYPYIGKVHVAGKTVTEIRSDITGRLA--------- 153 (379)
T ss_pred CCcEECCCCEEEEEEecCcccccccccccccccCCCEECCCCeEeeccCceEEECCCCHHHHHHHHHHHHH---------
Confidence 46899999999987753322211 0111233221 11 111 27899999999988753
Q ss_pred ECCeeccCCCCcccccCCCcceeeec-cCcceeEEEcCCCcEEEEeecc-cccHHHHHHHHHHHhCCCCC----ceeEEe
Q 036691 184 YEGKKLEDSKTLAFYDMKDECLLEMF-PSSIQIFVRTPIEEIVRLEVEV-LIVVRDVKEIVANIIDLSLG----NQDLFY 257 (426)
Q Consensus 184 ~~g~~L~d~~tL~~y~I~~~s~i~l~-~~~~~i~V~~~~g~~~~l~v~~-~~tV~~lK~~I~~~~~ip~~----~q~L~~ 257 (426)
.|-..+--++.+. .....|+|...-.+.-.+.+.+ ..|+.+. |...-|+... .-.|..
T Consensus 154 -------------~~~~~PqV~V~v~~~~s~~V~V~GeV~~PG~~~l~~~~~tllda---Ia~AGG~~~~a~~~~V~l~R 217 (379)
T PRK15078 154 -------------KYIESPQVDVNIAAFRSQKAYVTGEVNKSGQQAITNVPLTILDA---INAAGGLTDDADWRNVVLTH 217 (379)
T ss_pred -------------HhccCCeEEEEEccCCceEEEEEceecCCeEEEecCCCccHHHH---HHHccCCCcccccceEEEEE
Confidence 0111111223333 2345677754444444555544 4566654 3333344322 234445
Q ss_pred cCee--------cCCCccccccCCCCCcccccCC-CCcEEEEEecCCcEEEEEEc-CCCcHHHHHHHH
Q 036691 258 AGTK--------LEACKTLASYGIKNNYVLDVLP-SPFQIFVKTWGGKTITLDVQ-PYNTVQDVKVKL 315 (426)
Q Consensus 258 ~g~~--------L~d~~tL~~y~I~~~~~l~l~~-~~m~i~v~~~~g~~~~l~v~-~~~tV~~lK~~i 315 (426)
+|+. +.....-.++-+++|+.|++.+ ....++|-..-++.-.+.+. +..|+.+.-.+.
T Consensus 218 ~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~~~~~v~V~GeV~~Pg~~~~~~~~~TL~~Al~~A 285 (379)
T PRK15078 218 NGKEERISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDRSGMTLTEALGNA 285 (379)
T ss_pred CCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCCCCcEEEEeeecccceEEecCCCCCCHHHHHHhc
Confidence 5533 1223333555688899999844 45678887766777778884 678888776554
No 257
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=46.37 E-value=79 Score=26.35 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=42.8
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccC---CCCCCCEEEEEe
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARY---NIQKHSTLHMVL 356 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y---~I~~~~ti~l~~ 356 (426)
+..-+-|..+.||+++...|..+.++++++..|+.++..+..+.++++. .=.++.-|++..
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Y 104 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSV 104 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEE
Confidence 3333468999999999999999999999995555566555666666542 123455666654
No 258
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=42.83 E-value=74 Score=26.53 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=33.4
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccc
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~ 121 (426)
+-|+.+.||+++...|..+.++++++.-|..++..+.. +.++++
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~-s~~mg~ 88 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAV-TATVGD 88 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCc-cchHHH
Confidence 46999999999999999999999998434445544444 666654
No 259
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=42.83 E-value=1.2e+02 Score=24.62 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=42.2
Q ss_pred CcEEEEeccCCCcHHHHHHHHhhh----hC--CCCC-cEEEEECCee--ccCCCCccccc-----CCCcceeee
Q 036691 149 GEIVNLEVKHSFAIRDVKAIVGSV----VG--VSAA-DHIMIYEGKK--LEDSKTLAFYD-----MKDECLLEM 208 (426)
Q Consensus 149 gk~~~i~v~~~~tV~~lK~~I~~~----~g--ip~~-~q~L~~~g~~--L~d~~tL~~y~-----I~~~s~i~l 208 (426)
...+++.+.+++|+.++.+.+-.+ .+ -+++ ++.|.-.|+. |..+..|.+|. +..|..++|
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L 101 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHL 101 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceE
Confidence 567899999999999999887665 22 3333 7888888875 66677777776 334444444
No 260
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=41.04 E-value=2e+02 Score=25.00 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=65.3
Q ss_pred ccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCcc--------cccCCCCcEEEEEecCCcEEEEEE
Q 036691 231 VLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYV--------LDVLPSPFQIFVKTWGGKTITLDV 302 (426)
Q Consensus 231 ~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~--------l~l~~~~m~i~v~~~~g~~~~l~v 302 (426)
.-+|.+.|=..|....|+ .|.+.+|..|...- .||-..|.. |.+-...+.+.|+. ..+-+++
T Consensus 12 ~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v---Gri~lel 81 (153)
T PF02505_consen 12 KPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVKV---GRIILEL 81 (153)
T ss_pred CHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEEE---eEEEEEe
Confidence 345777776667666665 57788887774332 355544443 33334557777765 3466888
Q ss_pred cC-CCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccC
Q 036691 303 QP-YNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARY 344 (426)
Q Consensus 303 ~~-~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y 344 (426)
.. .+.++.+++...+...++.+ +..|+-+....|++||
T Consensus 82 e~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 82 EDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred cCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 88 77888888777766543332 2468999999999998
No 261
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=41.00 E-value=1e+02 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=30.6
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc
Q 036691 290 VKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH 324 (426)
Q Consensus 290 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~ 324 (426)
++...|++..+.|+.+.|..+|+.++.+..+++..
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~ 51 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV 51 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc
Confidence 35568999999999999999999999999887765
No 262
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=40.28 E-value=1.1e+02 Score=23.29 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=28.5
Q ss_pred EEEEeccCCCcHHHHHHHHhhhhCC--CCCcEEEE
Q 036691 151 IVNLEVKHSFAIRDVKAIVGSVVGV--SAADHIMI 183 (426)
Q Consensus 151 ~~~i~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~ 183 (426)
.-++.|...+|+.++-..+.+++|+ .+..+.|.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 7788999999999999999999998 44567774
No 263
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=40.10 E-value=60 Score=35.60 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=51.2
Q ss_pred CCcEEEEeeccc-ccHHHHHHHHHHHhCCCCCceeEEe-cCeecCCCccccccCCCC--CcccccCCCCcEE
Q 036691 221 IEEIVRLEVEVL-IVVRDVKEIVANIIDLSLGNQDLFY-AGTKLEACKTLASYGIKN--NYVLDVLPSPFQI 288 (426)
Q Consensus 221 ~g~~~~l~v~~~-~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tL~~y~I~~--~~~l~l~~~~m~i 288 (426)
.|...+++.+.. .|+.+||.+|+...|.....|.+.- +|.-+.-++.|+.|.-.- .+.++++...|..
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~l 74 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGL 74 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhcc
Confidence 467778888775 5999999999999999999999875 467789999999988533 3345544344433
No 264
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=39.92 E-value=62 Score=26.93 Aligned_cols=54 Identities=19% Similarity=0.397 Sum_probs=35.1
Q ss_pred cCC-CCCHHHHHHHHHH----HhCCCccc------ceEEe--------------c---Ceec---cCCC-cccCCCCCCC
Q 036691 3 VKK-SEPIKNLKAMIHV----KEGISEDI------CDLFF--------------A---GDRL---EAGR-LVDYGIRNNS 50 (426)
Q Consensus 3 v~~-~dtv~~~K~~i~~----~~gi~~~~------q~L~~--------------~---g~~L---~d~~-l~~y~i~~~~ 50 (426)
|+. +.||.++++.+.+ .-|++|.+ -++++ + +..| +++. |+++||.++.
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 555 7888888776554 46676642 22222 1 1345 4566 9999999999
Q ss_pred eEEEEE
Q 036691 51 TLHFLH 56 (426)
Q Consensus 51 ~l~l~~ 56 (426)
-|.+..
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 888764
No 265
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=39.70 E-value=1.2e+02 Score=23.28 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=29.7
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCC--cceEE
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPL--HLQSI 328 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~L 328 (426)
++...++.|++++|+.++-..+..+.+++. ....|
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L 50 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVL 50 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEE
Confidence 367789999999999999999999999975 35555
No 266
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=39.25 E-value=59 Score=25.33 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=31.2
Q ss_pred Eeeccc-ccHHHHHHHHH-HHhCCCCCc----eeEEec-Ce---ecCCCccccccCCCCCccccc--CCCCcEE
Q 036691 227 LEVEVL-IVVRDVKEIVA-NIIDLSLGN----QDLFYA-GT---KLEACKTLASYGIKNNYVLDV--LPSPFQI 288 (426)
Q Consensus 227 l~v~~~-~tV~~lK~~I~-~~~~ip~~~----q~L~~~-g~---~L~d~~tL~~y~I~~~~~l~l--~~~~m~i 288 (426)
+.++.. .|+.+|-++|- .++|+.... .++.|. +. .-...++|+++||.+|+.+.+ ..+.+++
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~q~~~~ 75 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFDQDFNL 75 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETTTTEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcCCCcEE
Confidence 334443 58888888764 356655422 222332 21 223458999999999999887 4444443
No 267
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=39.04 E-value=1e+02 Score=24.63 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=33.3
Q ss_pred EEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe
Q 036691 66 VKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY 107 (426)
Q Consensus 66 Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 107 (426)
++..+|.+.. +.|+.+.|-.+|+.++.+..+++.. ..|-|
T Consensus 17 l~Y~GG~tr~-i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRI-VSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEE-EEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 3556899999 9999999999999999999888765 55544
No 268
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=38.60 E-value=1.2e+02 Score=23.56 Aligned_cols=42 Identities=24% Similarity=0.132 Sum_probs=35.2
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI 328 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L 328 (426)
-|.|-..+|.+-++.|+...|+.++-..+..+.+...+.-.-
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~ 45 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWT 45 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeE
Confidence 355666789999999999999999999999998877665543
No 269
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=38.42 E-value=27 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=22.3
Q ss_pred EEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 104 TLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 104 ~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
.|-|+|++|.. +.+|+|| +-.+..-.+++++
T Consensus 3 ~LW~aGK~l~~-~k~l~dy-~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQR-GKKLSDY-IGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccC-CCcHHHh-cCCCcceeEEEEe
Confidence 47799999999 9999999 5444444444443
No 270
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=37.75 E-value=1.1e+02 Score=23.42 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=33.7
Q ss_pred ceeeeccCcceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeE
Q 036691 204 CLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDL 255 (426)
Q Consensus 204 s~i~l~~~~~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L 255 (426)
|.+++.+....+.|...+.++-.+--..+.++..|++.++..++++..+-..
T Consensus 21 s~IeI~Rt~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v 72 (81)
T cd02413 21 SGVEVRVTPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNFPEGSVEL 72 (81)
T ss_pred eeEEEEEcCCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCCCCCeEEE
Confidence 3444443223334434445555566678889999999999999997665444
No 271
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=37.28 E-value=98 Score=23.86 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=27.3
Q ss_pred cCCcEEEEEEcC--CCcHHHHHHHHHhHhCCC
Q 036691 293 WGGKTITLDVQP--YNTVQDVKVKLFDKLQTP 322 (426)
Q Consensus 293 ~~g~~~~l~v~~--~~tV~~lK~~i~~~~gip 322 (426)
.+|.+..+.++| +.+.++|++.|+...+++
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 478899999999 669999999999999998
No 272
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=36.88 E-value=2.1e+02 Score=22.87 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=45.1
Q ss_pred CCcEEEEEec-CCcEEEEEEcCCCcHHHHHHHHHhH--hCCCCc----ceEEEEcCe--ecCCCCccccCC-----CCCC
Q 036691 284 SPFQIFVKTW-GGKTITLDVQPYNTVQDVKVKLFDK--LQTPLH----LQSIVFAGK--RLFENHVLARYN-----IQKH 349 (426)
Q Consensus 284 ~~m~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~~----~q~L~~~gk--~L~d~~tL~~y~-----I~~~ 349 (426)
..+.|.|... .+..+++.++++.|+.+|.+.+-.+ .+.... +..|--.|. =|..+.+|.+|. +..+
T Consensus 15 ~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~ 94 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRG 94 (106)
T ss_dssp SEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT
T ss_pred CeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcC
Confidence 3456677666 5578999999999999999998776 222221 456644442 235677788873 4566
Q ss_pred CEEEEEe
Q 036691 350 STLHMVL 356 (426)
Q Consensus 350 ~ti~l~~ 356 (426)
-.++|++
T Consensus 95 ~~~~L~L 101 (106)
T PF00794_consen 95 KDPHLVL 101 (106)
T ss_dssp --EEEEE
T ss_pred CCcEEEE
Confidence 6777765
No 273
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=36.22 E-value=47 Score=36.38 Aligned_cols=63 Identities=14% Similarity=0.258 Sum_probs=49.7
Q ss_pred CCcEEEEEEcC-CCcHHHHHHHHHhHhCCCCcceEEEE-cCeecCCCCccccCCC--CCCCEEEEEe
Q 036691 294 GGKTITLDVQP-YNTVQDVKVKLFDKLQTPLHLQSIVF-AGKRLFENHVLARYNI--QKHSTLHMVL 356 (426)
Q Consensus 294 ~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~-~gk~L~d~~tL~~y~I--~~~~ti~l~~ 356 (426)
.|.+.+++... ..|+.+||..|+.+.|+...+|.++- +|..+.-++.|..|.- .+-+.|++..
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFn 69 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFN 69 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEee
Confidence 57888888874 66999999999999999999998754 6777888888988872 3445566653
No 274
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.97 E-value=28 Score=35.40 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=47.1
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEE
Q 036691 300 LDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 300 l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l 354 (426)
++.+-.-|-.++.+.|+++.||+....+.+-+||+|.-.+||.+-|++.+..+.+
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv 108 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMV 108 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHH
Confidence 3445556778999999999999999999999999999999999999988766533
No 275
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=35.80 E-value=1.6e+02 Score=20.92 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=37.4
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEE
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l 132 (426)
|.|.+++|+. .+++.+.|+.++-..|....+- .----..+|+..+- ++-+++++++.+
T Consensus 1 I~v~lpdG~~---~~~~~g~T~~d~A~~I~~~l~~--~~~~A~Vng~~vdl------~~~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLPDGSI---KELPEGSTVLDVAYSIHSSLAK--RAVAAKVNGQLVDL------DHPLEDGDVVEI 58 (60)
T ss_dssp EEEEETTSCE---EEEETTBBHHHHHHHHSHHHHH--CEEEEEETTEEEET------TSBB-SSEEEEE
T ss_pred CEEECCCCCe---eeCCCCCCHHHHHHHHCHHHHh--heeEEEEcCEECCC------CCCcCCCCEEEE
Confidence 3555678876 5578899999999999877531 11112356765554 456667787776
No 276
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=35.27 E-value=2.3e+02 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=28.8
Q ss_pred CCCcEEEEeecccccHHHHHHHHHHHhCCCC-CceeE
Q 036691 220 PIEEIVRLEVEVLIVVRDVKEIVANIIDLSL-GNQDL 255 (426)
Q Consensus 220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~-~~q~L 255 (426)
.++...++....++||+++-.++.+++.++. .+.+|
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l 46 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQL 46 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEE
Confidence 4455578999999999999999999998886 33444
No 277
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=34.25 E-value=1.6e+02 Score=22.88 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=32.8
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceE
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFT 104 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~ 104 (426)
|.|-..+|.+.+ +.|+...|+.++-+.+..+.+...+.-.
T Consensus 5 vkv~~~Dg~sK~-l~V~~~~Ta~dV~~~L~~K~h~~~~~~W 44 (85)
T cd01787 5 VKVYSEDGASKS-LEVDERMTARDVCQLLVDKNHCQDDSSW 44 (85)
T ss_pred EEEEecCCCeeE-EEEcCCCcHHHHHHHHHHHhCCCCCCCe
Confidence 455556899999 9999999999999999999987555433
No 278
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=33.97 E-value=1.4e+02 Score=22.92 Aligned_cols=49 Identities=22% Similarity=0.378 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHhHhCCCCcceEEEE--cCeecCCCCccccCCCCCCCEEEEEee
Q 036691 306 NTVQDVKVKLFDKLQTPLHLQSIVF--AGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 306 ~tV~~lK~~i~~~~gip~~~q~L~~--~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
.|.++|+.+.+++.+++.+.-+|+. .|.+++|+.-+.. +.+ .|..|++.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~-nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPD-NTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSS-SEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCC-CCEEEEEC
Confidence 5899999999999999987777765 7888876643332 333 44445543
No 279
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=33.24 E-value=1.3e+02 Score=22.78 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=30.8
Q ss_pred cCcEEEEeccCCCcHHHHHHHHhhhhCCC--CCcEEEEE
Q 036691 148 TGEIVNLEVKHSFAIRDVKAIVGSVVGVS--AADHIMIY 184 (426)
Q Consensus 148 ~gk~~~i~v~~~~tV~~lK~~I~~~~gip--~~~q~L~~ 184 (426)
.+...++.|...+|..++-..+.+++++. +..+.|.-
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~e 49 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVE 49 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEE
Confidence 36778899999999999999999999987 45566653
No 280
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=33.07 E-value=1e+02 Score=31.94 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=51.5
Q ss_pred eeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCC----C--CCceeEE-ecCeecCCCccccccCCCCCccccc
Q 036691 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDL----S--LGNQDLF-YAGTKLEACKTLASYGIKNNYVLDV 281 (426)
Q Consensus 214 ~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i----p--~~~q~L~-~~g~~L~d~~tL~~y~I~~~~~l~l 281 (426)
+|+|...+ +...+-++.+.++.++--.|.+..+- + +..-.|. .+|..|+.+.||++.+|.+|+.+++
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L 77 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVL 77 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEE
Confidence 46665443 44788889999999999999888764 2 2233444 4578999999999999999999998
No 281
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=32.84 E-value=19 Score=35.75 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=43.6
Q ss_pred cCCCceeEEEEEc-CCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccc
Q 036691 68 IPTNQTATVVEAM-PYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119 (426)
Q Consensus 68 ~~~g~~~~~~~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL 119 (426)
..+|.... +.+. .+..+..+|.++.+..+++++.|.+.+.|..|.| +..+
T Consensus 289 ~~dg~~~~-~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d-~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIK-ITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKD-NRSL 339 (341)
T ss_pred CCCCceee-eccccccccccccccccccccccchhheeeccCCcccCc-cccc
Confidence 44788887 7777 7889999999999999999999999999999999 5544
No 282
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=31.62 E-value=1.9e+02 Score=23.03 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=37.1
Q ss_pred cCcEEEEeccCCCcHHHHHHHHhhh--hCCCC----CcEEEEECCee--ccCCCCccccc
Q 036691 148 TGEIVNLEVKHSFAIRDVKAIVGSV--VGVSA----ADHIMIYEGKK--LEDSKTLAFYD 199 (426)
Q Consensus 148 ~gk~~~i~v~~~~tV~~lK~~I~~~--~gip~----~~q~L~~~g~~--L~d~~tL~~y~ 199 (426)
.+..+++.++.+.|++++-+.+-.+ .+..+ +++.|.-.|+. |..+..|.+|.
T Consensus 26 ~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 26 SQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp CSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 6788899999999999999887666 22222 27888888865 77778888876
No 283
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=31.31 E-value=1.6e+02 Score=24.09 Aligned_cols=57 Identities=12% Similarity=0.023 Sum_probs=39.0
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCcceEEEE-cCeecCCCCcccc----CCCCCCCEEEEEee
Q 036691 300 LDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF-AGKRLFENHVLAR----YNIQKHSTLHMVLA 357 (426)
Q Consensus 300 l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~gk~L~d~~tL~~----y~I~~~~ti~l~~~ 357 (426)
+-|..+.||+++...|..+.++++++--.+| ++.....+.++++ |+- .+.-|+|...
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyl~Ys 106 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKD-EDGFLYMTYS 106 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCC-CCCEEEEEEe
Confidence 4589999999999999999998888744444 5544455666543 333 3556666543
No 284
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=31.30 E-value=93 Score=24.10 Aligned_cols=64 Identities=17% Similarity=0.328 Sum_probs=41.7
Q ss_pred EeecccccHHHHHHHHHHHhCCC-------CCceeEEecCe-------ecCCCccccccCCCCCccccc----CCCCcEE
Q 036691 227 LEVEVLIVVRDVKEIVANIIDLS-------LGNQDLFYAGT-------KLEACKTLASYGIKNNYVLDV----LPSPFQI 288 (426)
Q Consensus 227 l~v~~~~tV~~lK~~I~~~~~ip-------~~~q~L~~~g~-------~L~d~~tL~~y~I~~~~~l~l----~~~~m~i 288 (426)
++++++.|..++-+.+.....+. .....|+..+- .-+=+++|++. +.+|..|.+ ++..+.+
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~lp~~~~~ 79 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDPTLPISLRL 79 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEETTESSEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECCCCceeEEE
Confidence 57889999999999998874333 33455555442 12335788887 788887777 4445555
Q ss_pred EEE
Q 036691 289 FVK 291 (426)
Q Consensus 289 ~v~ 291 (426)
.|+
T Consensus 80 rl~ 82 (84)
T PF08825_consen 80 RLK 82 (84)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 285
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=30.95 E-value=1.9e+02 Score=23.45 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=28.4
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPL 323 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~ 323 (426)
++|-..+|.+.++.|....+-.+++.++-.+.|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566677999999999999999999999999999987
No 286
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=30.18 E-value=35 Score=27.22 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=43.6
Q ss_pred EeecCCCcccCCc--e--eeccc-cCCCCCHHHHHHHHHHhcCccceEEEecceecCCCcc------------ccccccC
Q 036691 355 VLAPSSRIIELPL--I--FIDPS-ISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRT------------LADYGMD 417 (426)
Q Consensus 355 ~~~~~gg~~~~~~--~--~~~~~-~~~~~~v~~~k~~i~~~~~~~~q~l~~~g~~L~d~~~------------l~~~~i~ 417 (426)
.+...||...+-+ + .++++ -....+++++-..|++++..+...+|..|..++.|=. -.+|-++
T Consensus 3 ~vEF~GGlE~Lf~~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~ 82 (96)
T PF09138_consen 3 TVEFSGGLELLFGNQKKHKVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVLINDADWELLGEEDYVLK 82 (96)
T ss_dssp EEEEETTCGGGTTT-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--
T ss_pred EEEEcCcHHHHhCCceeEEEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEEEcCccceeecCcceEcC
Confidence 3455677653322 2 33434 3366799999999999966656678887777777732 4679999
Q ss_pred CCCeEEEe
Q 036691 418 LSEKVVLV 425 (426)
Q Consensus 418 ~~~~l~l~ 425 (426)
.+|++..+
T Consensus 83 ~~D~I~Fi 90 (96)
T PF09138_consen 83 DGDNITFI 90 (96)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99988653
No 287
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=30.07 E-value=23 Score=35.23 Aligned_cols=51 Identities=31% Similarity=0.337 Sum_probs=44.8
Q ss_pred ecCCcEEEEEEc-CCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccc
Q 036691 292 TWGGKTITLDVQ-PYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342 (426)
Q Consensus 292 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~ 342 (426)
..+|.+..+.+. -+..+..+|.++....+|++..|.+.+.|.-|.|++++.
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 557888888777 778899999999999999999999999999999986553
No 288
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=29.93 E-value=24 Score=26.82 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=17.1
Q ss_pred HHHHh--cCccceEEEe---cceecCCCccccccccCC
Q 036691 386 MAKVK--FQAAVKELLV---DQVALQDDRTLADYGMDL 418 (426)
Q Consensus 386 ~i~~~--~~~~~q~l~~---~g~~L~d~~~l~~~~i~~ 418 (426)
.||+| +.|..-.|.= .+.+|+=.++|.||||+.
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 48999 4444433332 688999999999999974
No 289
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=29.43 E-value=52 Score=32.40 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=53.6
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhH-hCCCCcceEEEEcC---eecC--CCCccccCCCCCCCE
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK-LQTPLHLQSIVFAG---KRLF--ENHVLARYNIQKHST 351 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~-~gip~~~q~L~~~g---k~L~--d~~tL~~y~I~~~~t 351 (426)
.|.||.++|+.....+.++++|..|-.-+... .|-+-+...|+++- |.|. .+.|+.++||.|..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 38999999988888889999999988877665 56777788898877 6664 367999999999876
No 290
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=28.99 E-value=3.8e+02 Score=23.16 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=62.9
Q ss_pred cccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCcc--------cccCCCCcEEEEEecCCcEEEEEEc
Q 036691 232 LIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYV--------LDVLPSPFQIFVKTWGGKTITLDVQ 303 (426)
Q Consensus 232 ~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~--------l~l~~~~m~i~v~~~~g~~~~l~v~ 303 (426)
-+|.+.|=.++....|+ .|.+..|..|...- -||-..|.. |.+-...|.+.|+. ..+-+++.
T Consensus 12 ~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V---GrI~le~~ 81 (150)
T TIGR03260 12 AETTEKLLNKLYDLDGI----LRVVIHGQRLPKKV---PYGPARGLPVNHPDRKTIRVKGEDVELRVQV---GRIILELE 81 (150)
T ss_pred HHHHHHHHHHhhccCCE----EEEEEECCCCCCCC---CCCcccCCCCCCCcceEEEECCEEEEEEEEE---eEEEEEec
Confidence 35666666666555555 57777787774332 355544433 33334556777765 33557777
Q ss_pred CCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccC
Q 036691 304 PYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARY 344 (426)
Q Consensus 304 ~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y 344 (426)
..+.++++++...+...++.+ +..|+-+....|++||
T Consensus 82 ~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 82 DEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred CHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 888888888777766554432 3457778999999998
No 291
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=28.22 E-value=1.1e+02 Score=24.72 Aligned_cols=44 Identities=11% Similarity=-0.022 Sum_probs=31.7
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCcc-eEEEEcCeecCCCCcccc
Q 036691 300 LDVQPYNTVQDVKVKLFDKLQTPLHL-QSIVFAGKRLFENHVLAR 343 (426)
Q Consensus 300 l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~gk~L~d~~tL~~ 343 (426)
+=|..+.||+++...|..+..+++++ ..|+.++.....+.|+++
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 34788999999999999999998775 445556655566667664
No 292
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=27.94 E-value=4e+02 Score=23.11 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHhCCCcccceEEecCeeccCCCcccCCCCCCCe----EEEEEec-CCceeEEEEcCCCceeEEEEE
Q 036691 5 KSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNST----LHFLHQN-LSEMKLFVKIPTNQTATVVEA 79 (426)
Q Consensus 5 ~~dtv~~~K~~i~~~~gi~~~~q~L~~~g~~L~d~~l~~y~i~~~~~----l~l~~~~-~~~m~i~Vk~~~g~~~~~~~v 79 (426)
.-+|.+.+=.+|.+-.|| .|++-+|..|-.. ..||-..|.. -+-.+.. ...+.+.|+. |+ +. +++
T Consensus 12 ~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~--VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--Gr-i~-lel 81 (153)
T PF02505_consen 12 KPETTEKLLNELYSIEGI----RRVVIHGPRLPKT--VPYGPARGTPVNHPDRKVINVGGEEVELTVKV--GR-II-LEL 81 (153)
T ss_pred CHHHHHHHHHHHhccCCE----EEEEEECCCCCCC--CCCCCCCCCcCCCCcceEEEECCEEEEEEEEE--eE-EE-EEe
Confidence 346777777778777776 4888889888544 4555544432 2222222 3567778875 54 45 788
Q ss_pred cC-CCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccc
Q 036691 80 MP-YHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMN 123 (426)
Q Consensus 80 ~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~ 123 (426)
.. .+.+..+++.-.+- +|..- . +..|+-+.. ..|++||-
T Consensus 82 e~~~~~ie~I~~iCee~--lpf~y-~-i~~G~f~r~-~~TvtDY~ 121 (153)
T PF02505_consen 82 EDEEDVIEKIREICEEV--LPFGY-D-IKEGKFIRT-KPTVTDYA 121 (153)
T ss_pred cCcHHHHHHHHHHHHHh--CCCce-E-eeeeEEecc-CCchhhhh
Confidence 87 56666666544433 33221 2 357999999 99999984
No 293
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.66 E-value=2.4e+02 Score=27.81 Aligned_cols=63 Identities=5% Similarity=0.061 Sum_probs=47.3
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS 141 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~ 141 (426)
+|+. ++++.+.||.+|-.. .+++++..-+..+|+.+.- ....++-+++|+.|.++.-..||..
T Consensus 6 NGk~---~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr--~~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 6 NGEP---RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR--SEYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CCEE---EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH--HHcCccccCCCCEEEEEEEecCCCC
Confidence 4654 556777888877654 5888888888899998853 4567888999999999666666543
No 294
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=27.64 E-value=3.2e+02 Score=21.83 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=29.5
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC-cceEE
Q 036691 293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPL-HLQSI 328 (426)
Q Consensus 293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~L 328 (426)
.++.-.++.+..+.||+++-..++.+..++. .+.+|
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l 46 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQL 46 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEE
Confidence 3556678999999999999999999998877 34444
No 295
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=27.11 E-value=3e+02 Score=21.57 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=29.7
Q ss_pred CCcEEEEEEcC-----CCcHHHHHHHHHhHhCCCC-cceEEEEc
Q 036691 294 GGKTITLDVQP-----YNTVQDVKVKLFDKLQTPL-HLQSIVFA 331 (426)
Q Consensus 294 ~g~~~~l~v~~-----~~tV~~lK~~i~~~~gip~-~~q~L~~~ 331 (426)
+|....+.+.. +.+...|+.+|++..++|+ ....|.|.
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 56677777764 6899999999999999988 45555553
No 296
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=26.80 E-value=2e+02 Score=23.29 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=28.2
Q ss_pred eEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCC
Q 036691 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSA 177 (426)
Q Consensus 142 i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~ 177 (426)
++|...+|.+-++.|....+-.++++++-+++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 456678999999999999999999999999999877
No 297
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=26.62 E-value=1.4e+02 Score=23.54 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=36.5
Q ss_pred ccccCCCCCHHHHHHHHHHhcCccceEEEecce-------ecCCCcc---c--cccccCCCCeEEEe
Q 036691 371 DPSISLSISISEVKEMAKVKFQAAVKELLVDQV-------ALQDDRT---L--ADYGMDLSEKVVLV 425 (426)
Q Consensus 371 ~~~~~~~~~v~~~k~~i~~~~~~~~q~l~~~g~-------~L~d~~~---l--~~~~i~~~~~l~l~ 425 (426)
+++....+||.++-+.++.+.++...+++..+- .|-+++- + .++-++.+|.+.+.
T Consensus 22 ~~~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 22 VLDGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred eccCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 455556789999999999988766666665322 2223332 2 46788889888753
No 298
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=26.36 E-value=1.3e+02 Score=27.41 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=35.4
Q ss_pred ccccc-cCcEEEEEeeccceeeeEeecccCcEEEEeccCCCcHHHHHHHHhhhhC
Q 036691 121 SMNIK-SESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVG 174 (426)
Q Consensus 121 ~y~I~-~~s~i~l~~~~~~g~~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~g 174 (426)
++|.+ .|.|+|++.---++..|..+. .+.+.+.||.+.+.++|.+.|-
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~GpII~Q~------~Vpv~~~Dt~etl~~RV~~~Eh 174 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTGPIIAQA------AVPVLPGDTAETLEARVLEQEH 174 (200)
T ss_pred HcCCCccCcEEEEEccCCCCCCeEEEE------eeeecCCCCHHHHHHHHHHHHH
Confidence 55665 789999977655544554432 5678899999999999988775
No 299
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=1.8e+02 Score=27.86 Aligned_cols=72 Identities=14% Similarity=0.339 Sum_probs=55.2
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l 132 (426)
....|-||.++|+++. ....+..|...|+.-|.-..|...+.-.|. |-.+.+. |..++|...++-+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~-~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLT-QTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeee-eecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 6788999999999999 999999999999999999988766554443 3333332 2246788888888777765
No 300
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=24.90 E-value=2.4e+02 Score=21.51 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.8
Q ss_pred ccCcEEEEeccCCCcHHHHHHHHhhhhCCCC--CcEEEE
Q 036691 147 ATGEIVNLEVKHSFAIRDVKAIVGSVVGVSA--ADHIMI 183 (426)
Q Consensus 147 ~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~--~~q~L~ 183 (426)
.++...++.|...+|+.++-..+.++++++. ..+.|.
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 3577889999999999999999999999874 455555
No 301
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=24.61 E-value=3.4e+02 Score=21.29 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=31.2
Q ss_pred EEEEcCCCceeEEEEEcC-----CCcHHHHHHHHHHHhCCCC-CceEEEeC
Q 036691 64 LFVKIPTNQTATVVEAMP-----YHTVQNIKTMIQVKEGIQS-DQFTLVYD 108 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~-----~~tV~~lK~~I~~~~gip~-~~q~L~~~ 108 (426)
|.|+. +|.... +.++. +.+...|+++|++...+++ ..-.|-|.
T Consensus 3 vKv~y-~~~~rR-f~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 3 VKVKY-GGTLRR-FTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred EEEEe-CCEEEE-EEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 34444 566666 77774 6899999999999999987 45555563
No 302
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=23.81 E-value=1.3e+02 Score=23.18 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=29.2
Q ss_pred CccCCCCCHHHHHHHHHHHhCCCc-ccceEEe--cCe--eccCC
Q 036691 1 MKVKKSEPIKNLKAMIHVKEGISE-DICDLFF--AGD--RLEAG 39 (426)
Q Consensus 1 l~v~~~dtv~~~K~~i~~~~gi~~-~~q~L~~--~g~--~L~d~ 39 (426)
|-|.|+.|+++|=+.+..|+++.- +.-.|++ +|. +|.|+
T Consensus 18 L~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 18 LLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 458999999999999999999874 4455654 443 36554
No 303
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.35 E-value=3.6e+02 Score=22.02 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.0
Q ss_pred CCCcEEEEEecCCc--EEEEEEcCCCcHHHHHHHHHhHhCCC
Q 036691 283 PSPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDKLQTP 322 (426)
Q Consensus 283 ~~~m~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~gip 322 (426)
..-|.++.++.+++ +-.+.|++++|+.++.+.+-+|..+.
T Consensus 21 ~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 21 HGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred eeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 45588999987765 34589999999999999999998854
No 304
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.46 E-value=2e+02 Score=22.47 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=35.2
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE-EEcCeecC
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI-VFAGKRLF 336 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L-~~~gk~L~ 336 (426)
..+++.|++..|=.++|+.++..+|+++..-+- .+.|+.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 678999999999999999999999999987764 66776543
No 305
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=22.12 E-value=4.4e+02 Score=21.53 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=33.9
Q ss_pred cceeEEEcCCCcE--EEEeecccccHHHHHHHHHHHhCCC-----CCceeEE
Q 036691 212 SIQIFVRTPIEEI--VRLEVEVLIVVRDVKEIVANIIDLS-----LGNQDLF 256 (426)
Q Consensus 212 ~~~i~V~~~~g~~--~~l~v~~~~tV~~lK~~I~~~~~ip-----~~~q~L~ 256 (426)
-|+.|....+++. ..+.|++.+|+.++.+.+-+++.+. +....|+
T Consensus 23 vmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALY 74 (112)
T cd01782 23 VMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLY 74 (112)
T ss_pred EEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEE
Confidence 4788887776665 4688999999999999999998743 3455554
No 306
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=22.09 E-value=1.1e+02 Score=23.31 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=17.5
Q ss_pred EEEeecccccHHHHHHHHHHH
Q 036691 225 VRLEVEVLIVVRDVKEIVANI 245 (426)
Q Consensus 225 ~~l~v~~~~tV~~lK~~I~~~ 245 (426)
++++++.++|+.++|+.+++.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 578899999999999998765
No 307
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=21.80 E-value=1.4e+02 Score=24.40 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=33.5
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccc
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~ 121 (426)
+-|+.+.||+++...|..+..+.+++-..+|-|..+..++.++.+
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 89 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQ 89 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHH
Confidence 569999999999999999999888876555654445332556554
No 308
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=21.15 E-value=3.8e+02 Score=20.86 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=42.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHhH-hC--CCC---cceEEEEcC--eecCCCCccccCCCCCCCEEEEEe
Q 036691 297 TITLDVQPYNTVQDVKVKLFDK-LQ--TPL---HLQSIVFAG--KRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~-~g--ip~---~~q~L~~~g--k~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
..-+.|+..+|+.++-++++.. -| +++ ...++-.+| ..+..+.|+++.||.+-+.|.+..
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 3457899999999999999876 23 333 244667888 889999999999999999988765
No 309
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=21.01 E-value=2.8e+02 Score=21.00 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=36.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
+...-|-. .|.++|+.+.+++.++|...-+|+ -.|.+++|+.-+.. +.+++.+ |++
T Consensus 11 ~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l-~~L 68 (74)
T smart00266 11 NVRKGVAA-SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTEL-MAL 68 (74)
T ss_pred CeeEEEEc-CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEE-EEE
Confidence 33344433 379999999999999996666554 48999987654433 3344443 444
No 310
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=20.79 E-value=3.3e+02 Score=27.55 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=52.0
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHh--CCCCcceEEEEcC----e--ecCCCCccccCCCCCCCEEEEEe
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKL--QTPLHLQSIVFAG----K--RLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~L~~~g----k--~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
|.+.++...| +..+++.++++.+-|-+++-.-. +..+++..+.-+- . -+..++|+.+.|++.|..++|-.
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 5567777665 46799999999999988887653 4556666654421 2 13457899999999999999976
No 311
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=20.74 E-value=1.8e+02 Score=22.56 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=38.0
Q ss_pred EEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCee-c-CCCCcc---ccCCCCCCCEEEEEe
Q 036691 299 TLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKR-L-FENHVL---ARYNIQKHSTLHMVL 356 (426)
Q Consensus 299 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~-L-~d~~tL---~~y~I~~~~ti~l~~ 356 (426)
.+-|+++.|++++..-|+.+.++++++-..+|=+.. + ..+.++ .++- +.+..|++..
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Y 80 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSY 80 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEE
Confidence 356899999999999999999988776444443433 2 344443 3333 4566666654
No 312
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=20.20 E-value=1.4e+02 Score=22.83 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.9
Q ss_pred EEEEEcCCCcHHHHHHHHHhH
Q 036691 298 ITLDVQPYNTVQDVKVKLFDK 318 (426)
Q Consensus 298 ~~l~v~~~~tV~~lK~~i~~~ 318 (426)
++++++.+.|+.++|+.+.+.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 578999999999999999775
No 313
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.10 E-value=4.2e+02 Score=20.45 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=33.5
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF 330 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 330 (426)
..++ .+|.+..+.++..-|-+.|+++|+..+.+|++..-+.|
T Consensus 3 fKv~-~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 3 FKSS-FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred EEEE-eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 3443 36777777777788899999999999999998876666
No 314
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=20.06 E-value=2e+02 Score=22.05 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHHhCCCCCceeEEe--cCeecCCCcccc
Q 036691 233 IVVRDVKEIVANIIDLSLGNQDLFY--AGTKLEACKTLA 269 (426)
Q Consensus 233 ~tV~~lK~~I~~~~~ip~~~q~L~~--~g~~L~d~~tL~ 269 (426)
.+..+|+.+..++++++.+.-+|+. .|...+|+.-+.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~ 59 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQ 59 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHC
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHh
Confidence 6899999999999999988888875 477776654333
Done!