Query 036691
Match_columns 426
No_of_seqs 420 out of 2455
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 07:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 9.1E-35 3.1E-39 255.8 19.4 151 212-362 2-158 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 6.7E-34 2.3E-38 253.5 18.4 152 210-361 18-172 (172)
3 3rt3_B Ubiquitin-like protein 100.0 2E-33 6.7E-38 247.3 18.6 147 61-209 2-151 (159)
4 3u30_A Ubiquitin, linear DI-ub 100.0 2E-33 6.9E-38 250.4 18.5 150 58-209 17-166 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 5.6E-32 1.9E-36 235.9 19.9 149 213-361 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 2.6E-31 9E-36 231.6 19.1 146 62-209 1-146 (152)
7 3phx_B Ubiquitin-like protein 99.8 7.4E-20 2.5E-24 141.1 11.2 78 283-360 2-79 (79)
8 3plu_A Ubiquitin-like modifier 99.8 7.4E-20 2.5E-24 142.7 10.2 74 282-355 18-91 (93)
9 2kdi_A Ubiquitin, vacuolar pro 99.8 7.2E-21 2.4E-25 157.1 3.4 104 59-164 7-113 (114)
10 3plu_A Ubiquitin-like modifier 99.8 1E-19 3.4E-24 141.9 9.5 78 54-133 14-91 (93)
11 4fbj_B NEDD8; effector-HOST ta 99.8 1.6E-19 5.6E-24 142.1 10.4 78 286-363 1-78 (88)
12 4eew_A Large proline-rich prot 99.8 2.4E-19 8.3E-24 141.1 9.6 88 45-135 1-88 (88)
13 3phx_B Ubiquitin-like protein 99.8 4.8E-19 1.6E-23 136.5 10.5 77 60-138 3-79 (79)
14 3dbh_I NEDD8; cell cycle, acti 99.8 6.2E-19 2.1E-23 138.7 10.1 79 283-361 10-88 (88)
15 2uyz_B Small ubiquitin-related 99.8 4.9E-19 1.7E-23 136.4 8.7 77 285-361 3-79 (79)
16 1wyw_B Ubiquitin-like protein 99.8 7.9E-19 2.7E-23 140.7 9.5 79 283-361 19-97 (97)
17 1ndd_A NEDD8, protein (ubiquit 99.8 1.5E-18 5E-23 132.4 10.6 76 286-361 1-76 (76)
18 4hcn_B Polyubiquitin, ubiquiti 99.8 1.3E-18 4.4E-23 139.8 10.3 79 283-361 20-98 (98)
19 4fbj_B NEDD8; effector-HOST ta 99.8 9.4E-19 3.2E-23 137.8 8.9 79 62-142 1-79 (88)
20 3n3k_B Ubiquitin; hydrolase, p 99.8 1.6E-18 5.5E-23 135.3 9.9 80 284-363 2-81 (85)
21 4dwf_A HLA-B-associated transc 99.8 2.3E-18 7.8E-23 136.1 10.6 80 283-363 3-82 (90)
22 1sif_A Ubiquitin; hydrophobic 99.8 2E-18 6.7E-23 135.9 10.0 79 284-362 8-86 (88)
23 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2.3E-18 7.9E-23 135.2 10.0 80 283-362 5-84 (87)
24 4eew_A Large proline-rich prot 99.8 2.6E-18 8.8E-23 135.2 10.2 82 275-357 4-88 (88)
25 2kan_A Uncharacterized protein 99.8 2.4E-18 8.3E-23 136.9 10.1 81 282-363 12-93 (94)
26 3a9j_A Ubiquitin; protein comp 99.8 4.3E-18 1.5E-22 129.8 10.9 76 286-361 1-76 (76)
27 3mtn_B UBA80, ubcep1, ubiquiti 99.8 4.1E-18 1.4E-22 133.0 10.9 80 284-363 2-81 (85)
28 3v6c_B Ubiquitin; structural g 99.8 4.1E-18 1.4E-22 135.0 10.9 77 283-359 15-91 (91)
29 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 4.7E-18 1.6E-22 136.0 10.9 79 285-363 1-79 (96)
30 2hj8_A Interferon-induced 17 k 99.8 2E-18 6.7E-23 135.9 8.4 80 284-363 3-82 (88)
31 1wy8_A NP95-like ring finger p 99.7 6.1E-18 2.1E-22 133.4 10.9 79 284-362 6-86 (89)
32 1uh6_A Ubiquitin-like 5; beta- 99.7 2.1E-18 7.3E-23 137.2 8.3 72 285-356 28-99 (100)
33 1yx5_B Ubiquitin; proteasome, 99.7 3.5E-18 1.2E-22 137.3 9.6 92 62-155 1-92 (98)
34 2kk8_A Uncharacterized protein 99.7 3.6E-18 1.2E-22 133.0 9.3 75 284-358 9-84 (84)
35 2kdi_A Ubiquitin, vacuolar pro 99.7 1.1E-18 3.8E-23 143.9 6.7 81 283-363 7-87 (114)
36 2l7r_A Ubiquitin-like protein 99.7 3.7E-18 1.3E-22 135.7 9.1 78 282-361 16-93 (93)
37 2uyz_B Small ubiquitin-related 99.7 3.7E-18 1.3E-22 131.5 8.7 77 61-139 3-79 (79)
38 3vdz_A Ubiquitin-40S ribosomal 99.7 8.2E-18 2.8E-22 138.2 11.2 78 284-361 34-111 (111)
39 3dbh_I NEDD8; cell cycle, acti 99.7 5E-18 1.7E-22 133.5 9.1 79 59-139 10-88 (88)
40 2ojr_A Ubiquitin; lanthide-bin 99.7 1.8E-17 6.1E-22 136.2 12.4 78 284-361 34-111 (111)
41 2faz_A Ubiquitin-like containi 99.7 1.2E-17 4.1E-22 128.2 10.5 74 285-358 2-77 (78)
42 1wyw_B Ubiquitin-like protein 99.7 5.6E-18 1.9E-22 135.8 9.0 80 58-139 18-97 (97)
43 1ndd_A NEDD8, protein (ubiquit 99.7 1E-17 3.5E-22 127.7 9.6 76 62-139 1-76 (76)
44 4ajy_B Transcription elongatio 99.7 1.3E-17 4.5E-22 135.8 10.6 76 286-361 1-84 (118)
45 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.3E-17 4.5E-22 130.8 9.9 81 58-140 4-84 (87)
46 4hcn_B Polyubiquitin, ubiquiti 99.7 9.5E-18 3.2E-22 134.7 9.2 80 58-139 19-98 (98)
47 2kan_A Uncharacterized protein 99.7 1.4E-17 4.8E-22 132.5 9.9 80 58-140 12-92 (94)
48 2fnj_B Transcription elongatio 99.7 1.3E-17 4.3E-22 136.5 9.8 76 286-362 1-84 (118)
49 2lxa_A Ubiquitin-like protein 99.7 4.6E-18 1.6E-22 132.8 6.8 73 286-358 2-78 (87)
50 4dwf_A HLA-B-associated transc 99.7 1.5E-17 5.1E-22 131.4 9.9 79 58-139 2-80 (90)
51 1uh6_A Ubiquitin-like 5; beta- 99.7 8.1E-18 2.8E-22 133.9 8.1 72 60-133 27-98 (100)
52 2hj8_A Interferon-induced 17 k 99.7 9.2E-18 3.1E-22 132.1 8.2 79 60-140 3-81 (88)
53 1wju_A NEDD8 ultimate buster-1 99.7 1.5E-17 5E-22 132.4 9.1 76 288-364 18-97 (100)
54 3v6c_B Ubiquitin; structural g 99.7 2.1E-17 7.3E-22 130.8 10.0 77 59-137 15-91 (91)
55 1wgd_A Homocysteine-responsive 99.7 1.4E-17 4.9E-22 132.4 9.0 79 284-362 6-90 (93)
56 2faz_A Ubiquitin-like containi 99.7 2.3E-17 8E-22 126.6 9.7 75 60-136 1-77 (78)
57 2kk8_A Uncharacterized protein 99.7 1.6E-17 5.5E-22 129.3 8.8 74 60-135 9-83 (84)
58 3n3k_B Ubiquitin; hydrolase, p 99.7 1.4E-17 4.7E-22 130.0 8.4 79 60-140 2-80 (85)
59 1yx5_B Ubiquitin; proteasome, 99.7 3.6E-17 1.2E-21 131.4 11.0 78 286-363 1-78 (98)
60 1se9_A Ubiquitin family; ubiqu 99.7 2.8E-17 9.5E-22 136.0 10.4 82 282-363 13-108 (126)
61 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.3E-17 8E-22 131.9 9.6 81 61-143 1-81 (96)
62 1sif_A Ubiquitin; hydrophobic 99.7 2E-17 6.9E-22 130.1 8.9 78 60-139 8-85 (88)
63 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2.9E-17 1E-21 128.1 9.8 79 60-140 2-80 (85)
64 3a9j_A Ubiquitin; protein comp 99.7 3E-17 1E-21 125.1 9.6 76 62-139 1-76 (76)
65 3l0w_B Monoubiquitinated proli 99.7 3.1E-17 1.1E-21 144.7 11.0 78 286-363 1-78 (169)
66 1wy8_A NP95-like ring finger p 99.7 3.5E-17 1.2E-21 129.0 10.0 80 59-140 5-86 (89)
67 1v2y_A 3300001G02RIK protein; 99.7 1.2E-17 4.1E-22 134.6 7.4 80 284-363 6-101 (105)
68 1uel_A HHR23B, UV excision rep 99.7 6.8E-17 2.3E-21 128.9 11.6 77 286-362 1-80 (95)
69 2wyq_A HHR23A, UV excision rep 99.7 6.1E-17 2.1E-21 126.4 11.0 76 283-358 3-81 (85)
70 2l7r_A Ubiquitin-like protein 99.7 2E-17 6.8E-22 131.5 8.1 78 58-139 16-93 (93)
71 1we6_A Splicing factor, putati 99.7 2.9E-17 1E-21 135.0 9.4 81 282-362 24-108 (111)
72 2dzi_A Ubiquitin-like protein 99.7 4.1E-17 1.4E-21 126.1 9.6 77 283-359 5-81 (81)
73 3q3f_A Ribonuclease/ubiquitin 99.7 2.2E-17 7.7E-22 147.2 9.1 84 60-145 104-187 (189)
74 2lxa_A Ubiquitin-like protein 99.7 1.4E-17 4.8E-22 130.1 6.9 73 62-136 2-78 (87)
75 4a20_A Ubiquitin-like protein 99.7 4.5E-17 1.6E-21 130.0 9.9 76 283-358 17-96 (98)
76 1wgh_A Ubiquitin-like 3, HCG-1 99.7 7.7E-17 2.6E-21 132.2 11.2 80 283-362 14-103 (116)
77 3vdz_A Ubiquitin-40S ribosomal 99.7 5.1E-17 1.7E-21 133.4 10.1 78 60-139 34-111 (111)
78 3u5e_m 60S ribosomal protein L 99.7 1.3E-19 4.6E-24 152.8 -5.6 102 286-394 1-106 (128)
79 3b1l_X E3 ubiquitin-protein li 99.5 1.2E-18 4.1E-23 133.2 0.0 75 286-360 1-75 (76)
80 3m62_B UV excision repair prot 99.7 3.6E-17 1.2E-21 133.2 8.8 76 286-361 2-77 (106)
81 3q3f_A Ribonuclease/ubiquitin 99.7 5.4E-17 1.9E-21 144.7 10.0 79 285-363 105-183 (189)
82 3l0w_B Monoubiquitinated proli 99.7 6.5E-17 2.2E-21 142.6 10.3 82 62-145 1-82 (169)
83 1yqb_A Ubiquilin 3; structural 99.7 7.9E-17 2.7E-21 129.7 10.0 80 282-362 19-98 (100)
84 1v2y_A 3300001G02RIK protein; 99.7 2.5E-17 8.6E-22 132.7 6.6 79 60-139 6-99 (105)
85 2fnj_B Transcription elongatio 99.7 4.1E-17 1.4E-21 133.5 7.8 75 62-139 1-83 (118)
86 1se9_A Ubiquitin family; ubiqu 99.7 6.1E-17 2.1E-21 134.0 8.6 82 58-140 13-107 (126)
87 2gow_A HCG-1 protein, ubiquiti 99.7 1.5E-16 5E-21 132.4 11.0 80 284-363 16-105 (125)
88 3m63_B Ubiquitin domain-contai 99.7 2.1E-17 7.1E-22 133.3 5.7 90 41-135 10-99 (101)
89 1wgd_A Homocysteine-responsive 99.7 7.1E-17 2.4E-21 128.3 8.7 79 59-139 5-89 (93)
90 3m63_B Ubiquitin domain-contai 99.7 2E-17 6.7E-22 133.4 5.1 92 265-357 7-99 (101)
91 2ojr_A Ubiquitin; lanthide-bin 99.7 8.8E-17 3E-21 132.1 8.9 78 60-139 34-111 (111)
92 1wx8_A Riken cDNA 4931431F19; 99.7 5.2E-17 1.8E-21 129.9 7.1 79 283-362 15-93 (96)
93 4a20_A Ubiquitin-like protein 99.7 1.2E-16 4E-21 127.6 9.0 77 58-136 16-96 (98)
94 2wyq_A HHR23A, UV excision rep 99.7 2E-16 6.9E-21 123.4 10.1 76 59-136 3-81 (85)
95 1ttn_A DC-UBP, dendritic cell- 99.7 1.8E-16 6E-21 129.1 10.1 78 284-361 22-99 (106)
96 1wgh_A Ubiquitin-like 3, HCG-1 99.7 2.1E-16 7.3E-21 129.6 10.4 79 58-138 13-101 (116)
97 4ajy_B Transcription elongatio 99.7 1.2E-16 4.1E-21 130.1 8.4 75 62-138 1-83 (118)
98 2dzi_A Ubiquitin-like protein 99.7 2.1E-16 7E-21 122.1 9.3 76 59-136 5-80 (81)
99 2bwf_A Ubiquitin-like protein 99.7 3.6E-16 1.2E-20 119.5 10.5 71 286-357 5-75 (77)
100 1v5o_A 1700011N24RIK protein; 99.7 2E-16 6.8E-21 127.9 9.3 82 284-365 6-92 (102)
101 1we6_A Splicing factor, putati 99.7 1.3E-16 4.4E-21 131.1 8.3 81 58-140 24-108 (111)
102 1wju_A NEDD8 ultimate buster-1 99.7 1.8E-16 6.3E-21 126.0 8.4 65 71-138 29-93 (100)
103 3b1l_X E3 ubiquitin-protein li 99.5 7E-18 2.4E-22 128.9 0.0 75 62-138 1-75 (76)
104 1j8c_A Ubiquitin-like protein 99.7 4.2E-16 1.4E-20 130.5 10.6 80 283-363 30-109 (125)
105 2klc_A Ubiquilin-1; ubiquitin- 99.7 6.5E-16 2.2E-20 124.6 11.3 78 283-361 23-100 (101)
106 1we7_A SF3A1 protein; structur 99.7 3.6E-16 1.2E-20 129.2 9.7 81 282-362 22-112 (115)
107 1uel_A HHR23B, UV excision rep 99.6 5.5E-16 1.9E-20 123.6 10.2 74 62-137 1-77 (95)
108 3u5c_f 40S ribosomal protein S 99.6 1.1E-17 3.8E-22 144.3 0.0 78 286-363 1-78 (152)
109 1yqb_A Ubiquilin 3; structural 99.6 3.7E-16 1.3E-20 125.7 9.0 79 58-139 19-97 (100)
110 4dbg_A Ranbp-type and C3HC4-ty 99.6 7E-16 2.4E-20 123.7 10.4 73 285-357 24-99 (105)
111 3m62_B UV excision repair prot 99.6 2.3E-16 7.8E-21 128.4 7.6 74 62-137 2-75 (106)
112 2gow_A HCG-1 protein, ubiquiti 99.6 3.9E-16 1.3E-20 129.8 8.9 80 58-139 14-103 (125)
113 1wx7_A Ubiquilin 3; ubiquitin- 99.6 5.5E-16 1.9E-20 126.2 9.2 79 284-363 16-94 (106)
114 1wx8_A Riken cDNA 4931431F19; 99.6 3E-16 1E-20 125.5 7.1 79 59-140 15-93 (96)
115 2bwf_A Ubiquitin-like protein 99.6 1.4E-15 4.7E-20 116.3 9.8 72 61-135 4-75 (77)
116 2kdb_A Homocysteine-responsive 99.6 3.9E-16 1.3E-20 124.9 6.8 73 283-355 21-99 (99)
117 1ttn_A DC-UBP, dendritic cell- 99.6 7.8E-16 2.7E-20 125.3 8.7 78 59-138 21-98 (106)
118 2klc_A Ubiquilin-1; ubiquitin- 99.6 1.6E-15 5.5E-20 122.2 10.5 80 56-138 20-99 (101)
119 1v5o_A 1700011N24RIK protein; 99.6 8E-16 2.7E-20 124.3 8.5 80 60-140 6-89 (102)
120 1j8c_A Ubiquitin-like protein 99.6 2.1E-15 7.2E-20 126.2 10.6 79 59-140 30-108 (125)
121 1we7_A SF3A1 protein; structur 99.6 1.5E-15 5E-20 125.5 9.5 79 60-140 24-112 (115)
122 3u5e_m 60S ribosomal protein L 99.6 4.8E-17 1.7E-21 137.1 0.0 77 62-140 1-77 (128)
123 2kdb_A Homocysteine-responsive 99.6 1E-15 3.6E-20 122.4 7.8 74 58-133 20-99 (99)
124 1wx7_A Ubiquilin 3; ubiquitin- 99.6 2.6E-15 8.7E-20 122.3 9.4 78 59-139 15-92 (106)
125 2dzm_A FAS-associated factor 1 99.6 1.1E-15 3.7E-20 122.2 6.9 76 284-360 7-84 (100)
126 3u5c_f 40S ribosomal protein S 99.6 7.1E-17 2.4E-21 139.3 0.0 78 62-141 1-78 (152)
127 4dbg_A Ranbp-type and C3HC4-ty 99.6 3.7E-15 1.3E-19 119.5 9.9 73 61-135 24-99 (105)
128 1wia_A Hypothetical ubiquitin- 99.6 5.6E-15 1.9E-19 117.7 9.8 76 284-362 6-82 (95)
129 2kd0_A LRR repeats and ubiquit 99.6 6.6E-15 2.2E-19 114.8 9.5 71 287-357 13-83 (85)
130 2xzm_9 RPS31E; ribosome, trans 99.6 1.7E-16 5.7E-21 140.5 0.2 73 286-363 1-73 (189)
131 1v5t_A 8430435I17RIK protein; 99.6 4.2E-15 1.4E-19 117.2 7.6 73 284-357 6-82 (90)
132 1wgg_A Ubiquitin carboxyl-term 99.6 4.4E-15 1.5E-19 118.5 7.5 73 284-358 6-79 (96)
133 1x1m_A Ubiquitin-like protein 99.5 1.3E-14 4.5E-19 118.2 9.0 76 284-359 11-101 (107)
134 2daf_A FLJ35834 protein; hypot 99.5 1.9E-14 6.7E-19 116.3 9.2 77 284-360 14-91 (118)
135 1v5t_A 8430435I17RIK protein; 99.5 1.3E-14 4.3E-19 114.5 7.5 75 59-136 5-83 (90)
136 2kjr_A CG11242; UBL, ubiquitin 99.5 3.6E-14 1.2E-18 112.6 9.6 72 284-355 14-93 (95)
137 2dzm_A FAS-associated factor 1 99.5 1.3E-14 4.3E-19 116.0 6.8 74 60-136 7-82 (100)
138 1wxv_A BAG-family molecular ch 99.5 4E-14 1.4E-18 112.1 9.7 75 284-359 6-86 (92)
139 2xzm_9 RPS31E; ribosome, trans 99.5 8.9E-16 3E-20 135.9 0.0 73 62-141 1-73 (189)
140 2io1_B Small ubiquitin-related 99.5 4E-14 1.4E-18 112.1 9.5 80 284-363 6-85 (94)
141 1wia_A Hypothetical ubiquitin- 99.5 2.7E-14 9.2E-19 113.8 8.3 75 59-138 5-80 (95)
142 3ai5_A Yeast enhanced green fl 99.5 4.2E-14 1.4E-18 134.9 10.9 78 282-359 230-307 (307)
143 1wgg_A Ubiquitin carboxyl-term 99.5 1.8E-14 6.2E-19 114.9 7.1 73 60-136 6-79 (96)
144 2dzj_A Synaptic glycoprotein S 99.5 1.4E-14 4.6E-19 113.6 6.2 70 285-354 10-85 (88)
145 1wxv_A BAG-family molecular ch 99.5 5.1E-14 1.8E-18 111.4 9.6 76 59-136 5-85 (92)
146 4b6w_A Tubulin-specific chaper 99.5 3E-14 1E-18 111.0 8.0 65 293-357 12-83 (86)
147 2kd0_A LRR repeats and ubiquit 99.5 4.5E-14 1.5E-18 110.0 8.9 70 64-135 14-83 (85)
148 1x1m_A Ubiquitin-like protein 99.5 3.2E-14 1.1E-18 115.8 8.3 77 59-137 10-101 (107)
149 2daf_A FLJ35834 protein; hypot 99.5 5.7E-14 2E-18 113.6 9.4 78 60-139 14-92 (118)
150 1v86_A DNA segment, CHR 7, way 99.5 2.2E-14 7.5E-19 114.2 6.5 73 284-358 16-88 (95)
151 2dzj_A Synaptic glycoprotein S 99.5 2.9E-14 9.9E-19 111.7 6.0 70 61-132 10-85 (88)
152 2kjr_A CG11242; UBL, ubiquitin 99.5 9.9E-14 3.4E-18 110.1 9.1 74 58-133 12-93 (95)
153 2kj6_A Tubulin folding cofacto 99.5 1.3E-13 4.6E-18 109.6 8.6 72 285-356 14-94 (97)
154 3ai5_A Yeast enhanced green fl 99.5 1.2E-13 4.3E-18 131.7 9.9 78 58-137 230-307 (307)
155 1oqy_A HHR23A, UV excision rep 99.4 9.7E-14 3.3E-18 136.2 8.1 79 284-362 6-88 (368)
156 2io0_B Small ubiquitin-related 99.4 4.5E-13 1.5E-17 105.3 10.1 81 283-363 3-83 (91)
157 1v86_A DNA segment, CHR 7, way 99.4 8.6E-14 2.9E-18 110.8 5.7 73 59-135 15-87 (95)
158 4b6w_A Tubulin-specific chaper 99.4 2.1E-13 7E-18 106.2 6.9 64 70-135 13-83 (86)
159 2kj6_A Tubulin folding cofacto 99.4 4E-13 1.4E-17 106.9 8.5 73 60-134 13-94 (97)
160 2io1_B Small ubiquitin-related 99.4 6.6E-13 2.3E-17 105.1 9.3 80 59-140 5-84 (94)
161 2d07_B Ubiquitin-like protein 99.4 1.1E-12 3.9E-17 103.6 10.1 78 284-361 16-93 (93)
162 1wf9_A NPL4 family protein; be 99.4 3.5E-13 1.2E-17 109.6 6.4 72 285-357 7-94 (107)
163 1oqy_A HHR23A, UV excision rep 99.4 3.2E-13 1.1E-17 132.5 7.1 79 60-140 6-88 (368)
164 1v6e_A Cytoskeleton-associated 99.4 9.6E-13 3.3E-17 104.7 8.2 71 286-356 8-86 (95)
165 1wz0_A Ubiquitin-like protein 99.4 1.7E-12 5.8E-17 104.5 8.7 79 284-362 23-101 (104)
166 2eke_C Ubiquitin-like protein 99.3 3.3E-12 1.1E-16 102.8 9.4 77 284-361 30-106 (106)
167 1wf9_A NPL4 family protein; be 99.3 7.8E-13 2.7E-17 107.6 5.3 73 60-135 6-94 (107)
168 1t0y_A Tubulin folding cofacto 99.3 4.9E-12 1.7E-16 105.3 9.3 72 285-356 6-85 (122)
169 1wm3_A Ubiquitin-like protein 99.3 7.1E-12 2.4E-16 94.2 9.2 70 286-355 2-71 (72)
170 2io0_B Small ubiquitin-related 99.3 7.9E-12 2.7E-16 98.2 9.8 81 59-141 3-83 (91)
171 1v6e_A Cytoskeleton-associated 99.3 3.4E-12 1.2E-16 101.5 7.6 72 61-134 7-86 (95)
172 2k8h_A Small ubiquitin protein 99.3 3E-12 1E-16 103.8 7.3 80 283-362 24-103 (110)
173 2kzr_A Ubiquitin thioesterase 99.3 4.2E-12 1.4E-16 99.0 6.2 71 286-357 1-77 (86)
174 1t0y_A Tubulin folding cofacto 99.3 1.1E-11 3.9E-16 103.0 9.0 73 60-134 5-85 (122)
175 2d07_B Ubiquitin-like protein 99.3 1.9E-11 6.6E-16 96.5 9.6 79 59-139 15-93 (93)
176 3a4r_A Nfatc2-interacting prot 99.3 2.6E-11 9E-16 92.8 9.8 73 283-355 5-78 (79)
177 3shq_A UBLCP1; phosphatase, hy 99.3 6.4E-12 2.2E-16 121.5 7.8 75 284-359 4-81 (320)
178 1wz0_A Ubiquitin-like protein 99.2 3E-11 1E-15 97.2 8.0 80 59-140 22-101 (104)
179 2eke_C Ubiquitin-like protein 99.2 5E-11 1.7E-15 95.9 9.2 79 58-139 28-106 (106)
180 1wm3_A Ubiquitin-like protein 99.2 6.9E-11 2.4E-15 88.8 9.3 70 62-133 2-71 (72)
181 2kzr_A Ubiquitin thioesterase 99.2 1.4E-11 4.9E-16 96.0 5.3 72 62-135 1-77 (86)
182 2k8h_A Small ubiquitin protein 99.2 3.5E-11 1.2E-15 97.6 7.6 82 58-141 23-104 (110)
183 3shq_A UBLCP1; phosphatase, hy 99.1 3.2E-11 1.1E-15 116.6 6.6 75 60-137 4-81 (320)
184 3a4r_A Nfatc2-interacting prot 99.1 2.3E-10 7.9E-15 87.5 9.5 73 59-133 5-78 (79)
185 1wjn_A Tubulin-folding protein 99.0 2.6E-09 8.7E-14 85.1 9.1 72 285-356 9-91 (97)
186 1wjn_A Tubulin-folding protein 99.0 2E-09 7E-14 85.6 8.4 74 61-135 9-92 (97)
187 3pge_A SUMO-modified prolifera 98.9 9.6E-09 3.3E-13 91.7 13.4 79 284-363 28-106 (200)
188 3kyd_D Small ubiquitin-related 98.9 7E-09 2.4E-13 84.2 10.3 77 284-360 39-115 (115)
189 2ylm_A Ubiquitin carboxyl-term 98.8 1.8E-06 6.3E-11 89.0 27.8 322 2-324 41-479 (530)
190 3tix_A Ubiquitin-like protein 98.8 1.2E-08 4.1E-13 89.0 8.3 79 284-363 56-134 (207)
191 3kyd_D Small ubiquitin-related 98.7 1.2E-07 4.2E-12 76.9 10.0 75 60-136 39-113 (115)
192 3pge_A SUMO-modified prolifera 98.6 1.3E-07 4.5E-12 84.3 9.6 79 58-139 26-104 (200)
193 3v7o_A Minor nucleoprotein VP3 98.6 7.6E-09 2.6E-13 91.6 0.2 79 284-363 20-98 (227)
194 3tix_A Ubiquitin-like protein 98.5 1.8E-07 6.2E-12 81.7 7.5 80 58-140 54-133 (207)
195 3goe_A DNA repair protein RAD6 98.4 2.7E-06 9.2E-11 62.9 10.0 71 286-356 10-81 (82)
196 2ylm_A Ubiquitin carboxyl-term 98.4 0.00017 6E-09 74.2 27.4 319 74-393 38-476 (530)
197 2pjh_A Protein NPL4, nuclear p 98.4 2.1E-07 7.2E-12 71.0 3.5 71 284-355 3-78 (80)
198 3v7o_A Minor nucleoprotein VP3 98.3 1.1E-07 3.8E-12 84.1 0.0 83 57-142 17-99 (227)
199 4efo_A Serine/threonine-protei 98.2 3.4E-06 1.2E-10 65.7 7.8 64 293-356 21-87 (94)
200 2pjh_A Protein NPL4, nuclear p 98.2 9.2E-07 3.1E-11 67.4 3.0 70 60-132 3-77 (80)
201 2jxx_A Nfatc2-interacting prot 98.1 1E-05 3.5E-10 63.7 8.9 72 284-355 24-96 (97)
202 3goe_A DNA repair protein RAD6 98.1 2E-05 7E-10 58.2 9.4 70 63-134 11-81 (82)
203 4efo_A Serine/threonine-protei 98.1 9E-06 3.1E-10 63.3 7.9 62 70-132 22-85 (94)
204 3uf8_A Ubiquitin-like protein 98.1 1.1E-05 3.7E-10 73.1 9.3 79 284-363 20-98 (209)
205 3ix6_A TS, tsase, thymidylate 98.0 6.8E-07 2.3E-11 86.5 0.1 79 284-363 20-98 (360)
206 3ivf_A Talin-1; FERM domain, c 98.0 0.00017 5.8E-09 71.1 17.1 136 222-357 12-167 (371)
207 2al3_A TUG long isoform; TUG U 98.0 2.2E-05 7.7E-10 60.2 7.9 76 284-359 8-83 (90)
208 3ivf_A Talin-1; FERM domain, c 97.9 0.00029 9.8E-09 69.4 16.6 125 149-273 12-156 (371)
209 3uf8_A Ubiquitin-like protein 97.9 6.1E-05 2.1E-09 68.1 10.3 96 56-155 16-111 (209)
210 2al3_A TUG long isoform; TUG U 97.9 4.9E-05 1.7E-09 58.3 7.7 73 137-209 7-79 (90)
211 2l76_A Nfatc2-interacting prot 97.9 9.2E-05 3.2E-09 57.3 9.2 72 284-356 20-91 (95)
212 3ix6_A TS, tsase, thymidylate 97.8 3.3E-06 1.1E-10 81.7 -0.0 83 58-143 18-100 (360)
213 2kc2_A Talin-1, F1; FERM, adhe 97.7 4.9E-05 1.7E-09 62.6 6.0 71 287-357 13-122 (128)
214 2jxx_A Nfatc2-interacting prot 97.7 0.00017 5.9E-09 56.6 8.9 73 58-132 22-95 (97)
215 4da1_A Protein phosphatase 1K, 97.6 9.9E-06 3.4E-10 80.5 0.0 78 285-363 30-107 (389)
216 2bps_A YUKD protein; ubiquitin 97.5 0.00034 1.2E-08 52.8 7.2 69 286-354 5-80 (81)
217 2kc2_A Talin-1, F1; FERM, adhe 97.3 0.00019 6.6E-09 59.1 4.9 69 141-209 13-120 (128)
218 2l76_A Nfatc2-interacting prot 97.2 0.0021 7.2E-08 49.7 9.0 72 60-134 20-91 (95)
219 4da1_A Protein phosphatase 1K, 97.2 6.2E-05 2.1E-09 74.7 0.0 83 59-144 28-110 (389)
220 3qx1_A FAS-associated factor 1 97.0 0.0036 1.2E-07 47.7 8.4 70 285-355 7-81 (84)
221 2bps_A YUKD protein; ubiquitin 96.8 0.0043 1.5E-07 46.8 7.8 69 62-132 5-80 (81)
222 3qx1_A FAS-associated factor 1 96.6 0.011 3.7E-07 45.0 8.5 72 60-133 6-81 (84)
223 4e71_A Plexin-B2, MM1; transme 96.2 0.023 8E-07 45.2 8.7 73 285-357 11-110 (111)
224 2dzk_A UBX domain-containing p 96.0 0.034 1.1E-06 44.5 9.0 75 60-135 12-90 (109)
225 1wj4_A KIAA0794 protein; UBX d 96.0 0.025 8.5E-07 46.4 8.0 72 283-355 41-117 (124)
226 3h6n_A Plexin-D1; structural g 95.9 0.059 2E-06 43.8 9.7 65 294-358 15-105 (127)
227 2dzk_A UBX domain-containing p 95.9 0.031 1.1E-06 44.7 7.9 73 285-357 13-90 (109)
228 1wj4_A KIAA0794 protein; UBX d 95.4 0.05 1.7E-06 44.5 7.8 73 59-133 41-117 (124)
229 4e71_A Plexin-B2, MM1; transme 95.2 0.11 3.7E-06 41.4 8.9 64 71-135 23-110 (111)
230 4e74_A Plexin-A4; RBD, structu 95.2 0.084 2.9E-06 42.4 8.1 74 285-358 13-115 (117)
231 2r2o_A Plexin-B1; effector dom 95.0 0.12 4E-06 42.7 8.7 76 284-359 23-130 (138)
232 2cr5_A Reproduction 8; UBX dom 94.5 0.13 4.6E-06 40.9 7.9 73 60-134 22-97 (109)
233 3kuz_A Plexin-C1; structural g 94.4 0.36 1.2E-05 39.0 9.9 60 296-355 39-124 (126)
234 2cr5_A Reproduction 8; UBX dom 94.3 0.14 4.6E-06 40.9 7.3 71 285-356 23-97 (109)
235 1ryj_A Unknown; beta/alpha pro 94.1 0.66 2.2E-05 33.5 10.3 68 284-361 3-70 (70)
236 1s3s_G P47 protein; AAA ATPase 94.0 0.12 4.2E-06 42.4 6.7 71 60-131 51-124 (127)
237 3h6n_A Plexin-D1; structural g 93.8 0.45 1.5E-05 38.6 9.4 65 70-135 15-104 (127)
238 1s3s_G P47 protein; AAA ATPase 93.6 0.17 5.7E-06 41.6 6.9 68 285-352 52-123 (127)
239 4a3p_A Ubiquitin carboxyl-term 93.5 0.16 5.5E-06 45.7 7.2 65 297-361 141-212 (217)
240 2l32_A Small archaeal modifier 93.4 0.24 8.3E-06 36.5 6.8 66 286-361 1-66 (74)
241 4e74_A Plexin-A4; RBD, structu 93.0 0.41 1.4E-05 38.4 7.9 64 71-135 26-114 (117)
242 3jyu_A Ubiquitin carboxyl-term 92.9 0.33 1.1E-05 44.1 8.4 65 297-361 153-224 (231)
243 3jyu_A Ubiquitin carboxyl-term 92.6 0.35 1.2E-05 43.9 8.2 65 74-139 154-224 (231)
244 2juo_A GA-binding protein alph 92.6 0.43 1.5E-05 35.5 6.9 62 298-359 5-66 (89)
245 2r2o_A Plexin-B1; effector dom 92.6 0.52 1.8E-05 38.8 8.2 64 72-136 41-129 (138)
246 1vjk_A Molybdopterin convertin 92.3 1.2 3.9E-05 34.5 9.7 73 284-361 8-98 (98)
247 2daj_A KIAA0977 protein, COBL- 92.2 0.17 6E-06 37.8 4.5 64 285-348 10-76 (91)
248 4a3p_A Ubiquitin carboxyl-term 91.7 0.45 1.6E-05 42.7 7.7 66 73-139 141-212 (217)
249 3rpf_C Molybdopterin convertin 91.6 0.74 2.5E-05 33.6 7.4 71 286-361 1-74 (74)
250 1oey_A P67-PHOX, neutrophil cy 91.2 0.59 2E-05 35.1 6.5 47 284-332 4-50 (83)
251 2daj_A KIAA0977 protein, COBL- 90.0 0.73 2.5E-05 34.5 5.9 64 61-126 10-76 (91)
252 2l32_A Small archaeal modifier 89.9 0.58 2E-05 34.4 5.5 67 62-140 1-67 (74)
253 2juo_A GA-binding protein alph 89.6 2.2 7.4E-05 31.8 8.1 56 153-208 6-61 (89)
254 1tyg_B YJBS; alpha beta barrel 89.5 1.1 3.7E-05 34.0 6.8 68 284-361 19-87 (87)
255 1oey_A P67-PHOX, neutrophil cy 89.2 0.96 3.3E-05 33.9 6.2 48 60-110 4-51 (83)
256 3ig3_A Plxna3 protein; plexin 89.0 2.7 9.1E-05 43.1 11.2 76 284-359 232-336 (627)
257 1ryj_A Unknown; beta/alpha pro 88.9 3.7 0.00013 29.4 9.2 67 61-139 4-70 (70)
258 3hm6_X Plexin-B1; structural g 88.5 3.1 0.0001 42.7 11.2 64 296-359 274-363 (644)
259 2kl0_A Putative thiamin biosyn 88.0 1.1 3.9E-05 32.6 5.9 62 294-363 6-67 (73)
260 3po0_A Small archaeal modifier 87.6 5.4 0.00018 29.8 9.9 61 296-361 18-89 (89)
261 1ef1_A Moesin; membrane, FERM 87.3 2.8 9.7E-05 39.0 9.8 74 285-359 1-80 (294)
262 1vjk_A Molybdopterin convertin 85.7 5 0.00017 30.8 8.9 73 60-139 8-98 (98)
263 3dwg_C 9.5 kDa culture filtrat 85.4 4.5 0.00016 30.6 8.4 74 286-361 1-93 (93)
264 1h4r_A Merlin; FERM, neurofibr 85.4 3.6 0.00012 38.7 9.6 76 283-359 20-100 (314)
265 3kuz_A Plexin-C1; structural g 84.6 4.5 0.00016 32.6 8.1 58 368-425 39-124 (126)
266 2cu3_A Unknown function protei 84.1 2.8 9.6E-05 29.4 6.2 60 294-361 5-64 (64)
267 1f0z_A THis protein; ubiquitin 83.4 1.6 5.5E-05 30.9 4.6 61 294-361 6-66 (66)
268 2i1j_A Moesin; FERM, coiled-co 82.9 4.9 0.00017 41.4 9.8 76 283-359 2-83 (575)
269 1fm0_D Molybdopterin convertin 82.2 3.2 0.00011 30.4 6.1 60 296-361 17-81 (81)
270 1tyg_B YJBS; alpha beta barrel 82.0 4.7 0.00016 30.5 6.9 69 59-139 18-87 (87)
271 2k5p_A THis protein, thiamine- 81.6 2.1 7.3E-05 31.6 4.9 70 286-363 1-71 (78)
272 3ig3_A Plxna3 protein; plexin 81.2 7 0.00024 40.0 9.9 66 71-137 246-336 (627)
273 2kvr_A Ubiquitin carboxyl-term 80.7 1.5 5.1E-05 35.9 4.1 33 298-330 58-90 (130)
274 3hm6_X Plexin-B1; structural g 77.7 9.3 0.00032 39.2 9.5 64 72-136 274-362 (644)
275 1wgk_A Riken cDNA 2900073H19 p 77.7 14 0.00049 29.2 8.9 77 284-362 10-109 (114)
276 2kvr_A Ubiquitin carboxyl-term 77.6 1.5 5.2E-05 35.9 3.2 31 2-32 61-91 (130)
277 2q5w_D Molybdopterin convertin 77.6 4 0.00014 29.5 5.3 60 296-361 16-77 (77)
278 2kmc_A Fermitin family homolog 74.0 26 0.0009 26.8 8.9 72 285-356 19-98 (102)
279 2g1e_A Hypothetical protein TA 73.7 14 0.00048 27.4 7.6 61 300-361 19-90 (90)
280 2qjl_A URM1, ubiquitin-related 73.5 28 0.00095 26.5 10.2 73 286-361 2-99 (99)
281 1f0z_A THis protein; ubiquitin 73.4 7.8 0.00027 27.2 5.7 61 70-139 6-66 (66)
282 3rpf_C Molybdopterin convertin 71.4 14 0.00046 26.6 6.8 71 62-139 1-74 (74)
283 3qij_A Protein 4.1; cytoskelet 70.7 16 0.00055 34.0 8.9 74 284-357 16-95 (296)
284 1vd2_A Protein kinase C, IOTA 68.8 23 0.00079 26.7 7.6 47 286-333 7-54 (89)
285 3dwg_C 9.5 kDa culture filtrat 68.8 33 0.0011 25.5 8.8 74 62-139 1-93 (93)
286 2l52_A Methanosarcina acetivor 67.8 25 0.00085 26.8 8.0 73 285-361 3-99 (99)
287 2kl0_A Putative thiamin biosyn 67.1 12 0.00042 27.0 5.6 61 70-140 6-66 (73)
288 1rws_A Hypothetical protein PF 65.2 2 6.8E-05 31.5 1.0 53 300-361 25-77 (77)
289 1vd2_A Protein kinase C, IOTA 65.0 29 0.001 26.1 7.5 49 60-110 5-54 (89)
290 3qa8_A MGC80376 protein; kinas 64.1 6.9 0.00024 41.1 5.3 52 294-345 320-372 (676)
291 4eut_A Serine/threonine-protei 62.0 17 0.00058 34.9 7.4 53 294-346 320-374 (396)
292 4eut_A Serine/threonine-protei 62.0 24 0.00083 33.8 8.5 53 70-123 320-373 (396)
293 2k5p_A THis protein, thiamine- 61.7 11 0.00037 27.7 4.5 61 70-139 6-69 (78)
294 1h4r_A Merlin; FERM, neurofibr 61.7 33 0.0011 31.9 9.2 74 59-135 20-98 (314)
295 1wgk_A Riken cDNA 2900073H19 p 61.4 43 0.0015 26.3 8.4 76 61-140 11-109 (114)
296 2cu3_A Unknown function protei 61.3 25 0.00084 24.4 6.2 60 70-139 5-64 (64)
297 1ef1_A Moesin; membrane, FERM 61.1 29 0.00099 31.9 8.6 72 61-135 1-78 (294)
298 3po0_A Small archaeal modifier 60.2 48 0.0016 24.3 8.6 61 72-139 18-89 (89)
299 2k9x_A Tburm1, uncharacterized 56.1 5.9 0.0002 31.3 2.4 76 285-362 4-103 (110)
300 2kmm_A Guanosine-3',5'-BIS(dip 52.2 36 0.0012 23.8 6.0 63 286-357 1-63 (73)
301 1y8x_B Ubiquitin-activating en 51.8 26 0.00089 26.9 5.3 59 297-355 6-82 (98)
302 3onh_A Ubiquitin-activating en 51.0 37 0.0013 27.3 6.2 55 300-355 10-77 (127)
303 2i1j_A Moesin; FERM, coiled-co 50.3 47 0.0016 34.1 8.6 73 60-135 3-81 (575)
304 2kmm_A Guanosine-3',5'-BIS(dip 49.9 33 0.0011 24.1 5.4 61 62-133 1-61 (73)
305 1wgr_A Growth factor receptor- 47.8 41 0.0014 25.9 5.9 70 285-354 9-89 (100)
306 1fm0_D Molybdopterin convertin 47.6 34 0.0012 24.6 5.3 56 77-139 21-81 (81)
307 3qa8_A MGC80376 protein; kinas 47.1 14 0.00049 38.7 4.2 52 70-122 320-371 (676)
308 1wgr_A Growth factor receptor- 47.0 36 0.0012 26.2 5.4 42 60-102 8-49 (100)
309 1wgy_A RAP guanine nucleotide 44.9 79 0.0027 24.5 7.1 67 143-209 13-84 (104)
310 1q1o_A Cell division control p 44.8 28 0.00096 26.7 4.5 40 59-99 3-49 (98)
311 2q5w_D Molybdopterin convertin 44.6 36 0.0012 24.2 5.0 59 73-139 17-77 (77)
312 2ddz_A 190AA long hypothetical 44.3 11 0.00038 32.4 2.3 83 102-190 11-121 (190)
313 1ip9_A BEM1 protein; ubiquitin 42.9 79 0.0027 23.5 6.4 36 285-321 12-47 (85)
314 3au4_A Myosin-X; protein-prote 42.8 54 0.0019 33.2 7.8 49 283-331 214-264 (555)
315 1y8x_B Ubiquitin-activating en 42.8 55 0.0019 25.1 5.9 71 222-292 4-96 (98)
316 1ip9_A BEM1 protein; ubiquitin 42.0 86 0.0029 23.3 6.5 44 60-107 11-54 (85)
317 2zjd_A Microtubule-associated 42.0 69 0.0024 25.9 6.7 46 77-122 57-103 (130)
318 2kmc_A Fermitin family homolog 42.0 1.1E+02 0.0039 23.3 7.9 70 62-133 20-97 (102)
319 3hvz_A Uncharacterized protein 41.6 54 0.0018 23.9 5.5 60 63-133 7-66 (78)
320 2k9x_A Tburm1, uncharacterized 40.3 15 0.00052 28.9 2.4 71 354-424 7-95 (110)
321 2qjl_A URM1, ubiquitin-related 40.0 1.2E+02 0.004 22.8 8.7 63 72-139 20-99 (99)
322 1rws_A Hypothetical protein PF 39.2 33 0.0011 24.7 4.0 49 226-283 24-72 (77)
323 3ge3_C Toluene-4-monooxygenase 36.9 1.1E+02 0.0038 22.6 6.4 60 297-356 16-82 (84)
324 3qij_A Protein 4.1; cytoskelet 36.9 42 0.0014 31.0 5.4 63 59-123 15-83 (296)
325 2g1e_A Hypothetical protein TA 35.8 1.1E+02 0.0036 22.3 6.6 61 77-139 19-90 (90)
326 3onh_A Ubiquitin-activating en 35.3 1.2E+02 0.0042 24.3 6.9 52 82-134 19-78 (127)
327 2v1y_A Phosphatidylinositol-4, 33.4 68 0.0023 25.0 5.1 32 214-245 21-52 (108)
328 2l05_A Serine/threonine-protei 31.6 1.7E+02 0.0057 22.2 6.9 45 285-329 17-61 (95)
329 2zjd_A Microtubule-associated 31.6 1.1E+02 0.0036 24.8 6.2 61 210-270 33-102 (130)
330 1c1y_B Proto-onkogene serine/t 31.6 1.4E+02 0.0049 21.6 6.2 42 288-329 4-45 (77)
331 2v1y_A Phosphatidylinositol-4, 30.0 94 0.0032 24.2 5.4 63 285-347 19-95 (108)
332 2lgx_A Fermitin family homolog 29.7 24 0.00081 27.5 1.8 70 285-355 26-100 (112)
333 4gmv_A RAS-associated and plec 28.6 1.1E+02 0.0038 28.1 6.6 69 286-354 32-111 (281)
334 2r2q_A Gamma-aminobutyric acid 28.3 69 0.0024 24.9 4.5 46 77-122 48-93 (110)
335 3pvl_A Myosin VIIA isoform 1; 28.1 82 0.0028 32.8 6.3 48 283-330 261-309 (655)
336 1wgy_A RAP guanine nucleotide 27.8 2.1E+02 0.0072 22.1 7.6 70 289-358 13-87 (104)
337 1eo6_A GATE-16, golgi-associat 27.3 1.2E+02 0.0039 24.0 5.6 58 77-134 49-109 (117)
338 1wxm_A A-RAF proto-oncogene se 27.2 1.5E+02 0.0051 22.1 5.7 43 287-329 9-51 (86)
339 1c1y_B Proto-onkogene serine/t 27.2 92 0.0032 22.7 4.5 42 64-106 4-45 (77)
340 2r2q_A Gamma-aminobutyric acid 26.2 81 0.0028 24.5 4.5 61 210-270 25-92 (110)
341 1v8c_A MOAD related protein; r 26.1 1.5E+02 0.0051 24.9 6.5 61 300-362 18-88 (168)
342 1q1o_A Cell division control p 26.1 86 0.0029 24.0 4.4 37 286-322 6-49 (98)
343 3h9d_A ATG8, microtubule-assoc 24.1 1.3E+02 0.0046 23.7 5.5 57 300-356 52-112 (119)
344 2hj1_A Hypothetical protein; s 24.0 1.6E+02 0.0055 22.3 5.7 59 296-359 26-87 (97)
345 2l05_A Serine/threonine-protei 23.9 2.2E+02 0.0075 21.5 6.2 45 61-106 17-61 (95)
346 3rui_B Autophagy-related prote 23.5 1.8E+02 0.0062 22.9 6.1 45 77-121 51-95 (118)
347 1wxm_A A-RAF proto-oncogene se 23.4 1.9E+02 0.0065 21.5 5.7 43 63-106 9-51 (86)
348 2eel_A Cell death activator CI 23.1 1.5E+02 0.0052 22.2 5.2 48 307-357 29-78 (91)
349 3tca_A Amyloid beta A4 precurs 23.0 1.7E+02 0.0059 26.2 6.9 69 286-354 35-114 (291)
350 3he4_B Synzip5; heterodimeric 22.1 56 0.0019 20.2 2.1 15 6-20 2-16 (46)
351 1eo6_A GATE-16, golgi-associat 21.8 1.8E+02 0.0062 22.8 5.8 44 227-270 49-93 (117)
352 2lgx_A Fermitin family homolog 20.8 1E+02 0.0035 24.0 3.9 69 141-210 28-101 (112)
353 2c7h_A RBBP6, retinoblastoma-b 20.8 2.6E+02 0.009 20.7 6.2 75 64-139 9-84 (86)
354 2inc_C TOUB protein; DIIRON, 4 20.4 2.6E+02 0.0089 20.5 8.6 60 297-356 14-81 (83)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=9.1e-35 Score=255.81 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=143.8
Q ss_pred cceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEE-e-cCeecCCCccccccCCCCCccccc----CCCC
Q 036691 212 SIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLF-Y-AGTKLEACKTLASYGIKNNYVLDV----LPSP 285 (426)
Q Consensus 212 ~~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~-~-~g~~L~d~~tL~~y~I~~~~~l~l----~~~~ 285 (426)
+|+|+|++++|+++++++++++||++||++|+..+|+|+++|+|. | +|+.|+|+++|++|+|.+++++++ ++.+
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 389999999999999999999999999999999999999999999 9 799999999999999999999999 3678
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||++|++||+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=6.7e-34 Score=253.51 Aligned_cols=152 Identities=41% Similarity=0.602 Sum_probs=143.0
Q ss_pred cCcceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCccccc---CCCCc
Q 036691 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPF 286 (426)
Q Consensus 210 ~~~~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l---~~~~m 286 (426)
+..|+|+|++++|+++.+++++++||.+||++|+..+|+|+++|+|.|+|+.|+|+.+|++|+|.++++|++ ++..|
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 456999999999999999999999999999999999999999999999999999999999999999999999 67889
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
.++|++++|+++++++++++||.+||++|+.++|+|+++|+|+|+|+.|+|++||++|+|++|++|||++|++||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2e-33 Score=247.30 Aligned_cols=147 Identities=27% Similarity=0.317 Sum_probs=143.2
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE-e-CCeEeecccccccccccccCcEEEEEee-cc
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV-Y-DGKLLKEDTATMTSMNIKSESIIHLVFC-PK 137 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~-~g~~L~d~~~tL~~y~I~~~s~i~l~~~-~~ 137 (426)
.|+|+||+.+|++++ ++|++++||.+||++|++++|+|+++|+|+ | +|+.|+| +.+|++|+|++|++||++++ ++
T Consensus 2 ~m~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d-~~tL~~y~i~~~~~l~l~~~~~~ 79 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQD-RVPLASQGLGPGSTVLLVVDKSD 79 (159)
T ss_dssp -CEEEEEETTSCEEE-EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCT-TSCGGGGTCCTTCEEEEEECCCC
T ss_pred ceEEEEEECCCCEEE-EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCC-CCCHHHcCCCCCCEEEEEccCCC
Confidence 489999999999999 999999999999999999999999999999 9 7999999 99999999999999999999 69
Q ss_pred ceeeeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeeec
Q 036691 138 EILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMF 209 (426)
Q Consensus 138 ~g~~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l~ 209 (426)
++|.++|++.+|+++++++++++||+++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++||++
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=250.39 Aligned_cols=150 Identities=39% Similarity=0.597 Sum_probs=146.0
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.+..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++++++
T Consensus 17 ~~~~m~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d-~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp --CCEEEEEEETTTEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTGGGTCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccc-cCCHhHcCCcccceeeeeeccc
Confidence 357899999999999999 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeeeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeeec
Q 036691 138 EILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMF 209 (426)
Q Consensus 138 ~g~~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l~ 209 (426)
+|+.++|++.+|+++++++.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEEC
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=5.6e-32 Score=235.90 Aligned_cols=149 Identities=42% Similarity=0.613 Sum_probs=144.3
Q ss_pred ceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCccccc---CCCCcEEE
Q 036691 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIF 289 (426)
Q Consensus 213 ~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l---~~~~m~i~ 289 (426)
|+|+|++++|+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++|+|.+++++++ .+..|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 46679999
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 290 VKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 290 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|++++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++||+++|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.98 E-value=2.6e-31 Score=231.64 Aligned_cols=146 Identities=40% Similarity=0.617 Sum_probs=143.4
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS 141 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~ 141 (426)
|+|+||+.+|+++. +++++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++++++|++.+.++++.
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d-~~tL~~~~i~~~~~l~l~~~~~~~~~ 78 (152)
T 3b08_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGMQ 78 (152)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEECCTTCEE
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcC-cccHHHhccCCCCeeEEEeecccccc
Confidence 89999999999999 99999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred eEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeeec
Q 036691 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMF 209 (426)
Q Consensus 142 i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l~ 209 (426)
++|++.+|+++.+++.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+|++|+++
T Consensus 79 i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 79 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146 (152)
T ss_dssp EEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred eeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=141.08 Aligned_cols=78 Identities=26% Similarity=0.320 Sum_probs=75.4
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS 360 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g 360 (426)
.++|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++||+++|++|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999999986
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.81 E-value=7.4e-20 Score=142.66 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=70.6
Q ss_pred CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~ 355 (426)
.++.|+|+|++++|++++++++|++||++||++|++++|+|+++|||+|+|++|+|+.||++|+|++|+||||.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999986
No 9
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=7.2e-21 Score=157.13 Aligned_cols=104 Identities=32% Similarity=0.388 Sum_probs=98.8
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
-+..+|+|++++|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++.+++|
T Consensus 7 ~~~~~i~vk~l~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLED-GRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CCCCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTTTTTCCSSCEEEEEECCCS
T ss_pred CCcEEEEEEeCCCcEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEEcCC
Confidence 36789999999999999 99999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eeeeEee---cccCcEEEEeccCCCcHHH
Q 036691 139 ILSIFVK---AATGEIVNLEVKHSFAIRD 164 (426)
Q Consensus 139 g~~i~Vk---~~~gk~~~i~v~~~~tV~~ 164 (426)
|+.++++ +.+|+++++++++++||++
T Consensus 85 G~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 85 GSMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp SCCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred CceeeccccccccCceEEEEeccccccCC
Confidence 9999998 5689999999999999874
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=1e-19 Score=141.92 Aligned_cols=78 Identities=14% Similarity=0.315 Sum_probs=70.7
Q ss_pred EEEecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 54 FLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 54 l~~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
|+-..+..|+|+||+++|++++ ++++|++||.+||++|++++|+|+++|||+|+|++|+| +.||++|+|++|++|+|.
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~-v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD-~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVR-VKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKD-HISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ------CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEE-EEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccC-cCCHHHcCCCCCCEEEEE
Confidence 4556678999999999999999 99999999999999999999999999999999999999 999999999999999984
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.80 E-value=1.6e-19 Score=142.13 Aligned_cols=78 Identities=32% Similarity=0.471 Sum_probs=73.2
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
|+|+|++++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|++|++||..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999965
No 12
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=141.14 Aligned_cols=88 Identities=24% Similarity=0.368 Sum_probs=72.0
Q ss_pred CCCCCCeEEEEEecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccccc
Q 036691 45 GIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI 124 (426)
Q Consensus 45 ~i~~~~~l~l~~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I 124 (426)
|..+++++++.++.+..|+|+||+.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i 78 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD-DKKLQEYNV 78 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTC
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCC-CCcHHHcCC
Confidence 4567889999999999999999999999999 99999999999999999999999999999999999999 999999999
Q ss_pred ccCcEEEEEee
Q 036691 125 KSESIIHLVFC 135 (426)
Q Consensus 125 ~~~s~i~l~~~ 135 (426)
+|++|||++|
T Consensus 79 -~g~~i~lv~R 88 (88)
T 4eew_A 79 -GGKVIHLVER 88 (88)
T ss_dssp -TTEEEEEEEC
T ss_pred -CCcEEEEEEC
Confidence 8999999875
No 13
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=136.49 Aligned_cols=77 Identities=22% Similarity=0.365 Sum_probs=74.7
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+.|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d-~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED-QLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEE-EEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEecCC
Confidence 5799999999999999 99999999999999999999999999999999999999 99999999999999999999875
No 14
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=6.2e-19 Score=138.71 Aligned_cols=79 Identities=30% Similarity=0.487 Sum_probs=76.7
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..+|+|+|++++|++++++|++++||++||++|++++|+|++.|+|+|+|+.|+|+.||++|+|+++++||+++|++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999997
No 15
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=4.9e-19 Score=136.44 Aligned_cols=77 Identities=13% Similarity=0.268 Sum_probs=74.7
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
.|+|+|++.+|++++++|++++||++||++++++.|+|+++|+|+|+|++|+|+.||++|+|++|++||++++++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999987
No 16
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.77 E-value=7.9e-19 Score=140.75 Aligned_cols=79 Identities=13% Similarity=0.256 Sum_probs=76.6
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+..|+|+|++.+|++++++|.+++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|+|+++++||++++++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999999997
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.77 E-value=1.5e-18 Score=132.43 Aligned_cols=76 Identities=33% Similarity=0.523 Sum_probs=72.9
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|+|++.+|+++++++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++||++++++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.3e-18 Score=139.80 Aligned_cols=79 Identities=49% Similarity=0.700 Sum_probs=75.8
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
...|+|+|++++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||++|++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999997
No 19
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.77 E-value=9.4e-19 Score=137.75 Aligned_cols=79 Identities=29% Similarity=0.433 Sum_probs=72.8
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS 141 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~ 141 (426)
|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++++++||..
T Consensus 1 M~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCC-CCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 79999999999999 99999999999999999999999999999999999999 99999999999999999999999865
Q ss_pred e
Q 036691 142 I 142 (426)
Q Consensus 142 i 142 (426)
.
T Consensus 79 ~ 79 (88)
T 4fbj_B 79 L 79 (88)
T ss_dssp -
T ss_pred C
Confidence 4
No 20
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.6e-18 Score=135.34 Aligned_cols=80 Identities=40% Similarity=0.573 Sum_probs=73.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
.+|+|+|++++|+++++++++++||++||++|++++++|+++|+|+|+|+.|+|+.||++|+|+++++||+++|++||..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g 81 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGG 81 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC----
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999853
No 21
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=2.3e-18 Score=136.13 Aligned_cols=80 Identities=23% Similarity=0.404 Sum_probs=74.5
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
+..|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|++|||+++.+++.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999 899999999988775
Q ss_pred c
Q 036691 363 I 363 (426)
Q Consensus 363 ~ 363 (426)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 22
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2e-18 Score=135.90 Aligned_cols=79 Identities=42% Similarity=0.648 Sum_probs=70.5
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
..|+|+|++++|+++.+++++++||++||++|++++|+|++.|+|+|+|+.|+|+.||++|||++|++|+++++++||.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999984
No 23
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.3e-18 Score=135.17 Aligned_cols=80 Identities=26% Similarity=0.320 Sum_probs=77.4
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
+..|+|+|++.+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++||++++++||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999984
No 24
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=135.25 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=71.7
Q ss_pred CCccccc---CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCE
Q 036691 275 NNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHST 351 (426)
Q Consensus 275 ~~~~l~l---~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~t 351 (426)
+++.+.+ .+..|+|+|++.+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++
T Consensus 4 ~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~ 82 (88)
T 4eew_A 4 PNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKV 82 (88)
T ss_dssp -----------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEE
T ss_pred CCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcE
Confidence 3445544 46679999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEee
Q 036691 352 LHMVLA 357 (426)
Q Consensus 352 i~l~~~ 357 (426)
|||++|
T Consensus 83 i~lv~R 88 (88)
T 4eew_A 83 IHLVER 88 (88)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999976
No 25
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=2.4e-18 Score=136.95 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=76.9
Q ss_pred CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC-CccccCCCCCCCEEEEEeecCC
Q 036691 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVLARYNIQKHSTLHMVLAPSS 360 (426)
Q Consensus 282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~-~tL~~y~I~~~~ti~l~~~~~g 360 (426)
.+..|+|+|++.+| +++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+++++|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 45689999999987 899999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred Ccc
Q 036691 361 RII 363 (426)
Q Consensus 361 g~~ 363 (426)
|+.
T Consensus 91 g~~ 93 (94)
T 2kan_A 91 RAK 93 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 853
No 26
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.76 E-value=4.3e-18 Score=129.80 Aligned_cols=76 Identities=50% Similarity=0.740 Sum_probs=74.6
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|+|++.+|+++++++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++||++++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 27
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.1e-18 Score=132.98 Aligned_cols=80 Identities=48% Similarity=0.635 Sum_probs=75.8
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
.+|+|+|++++|+++++++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|+++++||+++|++||..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~g 81 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGG 81 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC--
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999853
No 28
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.76 E-value=4.1e-18 Score=134.99 Aligned_cols=77 Identities=47% Similarity=0.698 Sum_probs=74.4
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
+..|+|+|++++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||+++|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999875
No 29
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.75 E-value=4.7e-18 Score=136.00 Aligned_cols=79 Identities=49% Similarity=0.684 Sum_probs=74.2
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
.|+|+|++++|++++++|++++||.+||++|++++|+|++.|+|+|+|+.|+|+.||++|+|+++++||++++++||..
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999965
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=135.93 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=72.5
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
.+|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+++.+++||..
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE 82 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999853
No 31
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=6.1e-18 Score=133.36 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=76.0
Q ss_pred CCcEEEEEecCC-cEEEE-EEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 284 SPFQIFVKTWGG-KTITL-DVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 284 ~~m~i~v~~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..|+|+|++.+| +++++ ++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|||+++++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 579999999999 79999 5999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 036691 362 I 362 (426)
Q Consensus 362 ~ 362 (426)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 32
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=2.1e-18 Score=137.19 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=69.9
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
.|+|+|++++|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++++||||+.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 499999999999999999999999999999999999999999999999999999999999999999999864
No 33
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.75 E-value=3.5e-18 Score=137.28 Aligned_cols=92 Identities=37% Similarity=0.489 Sum_probs=74.6
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS 141 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~ 141 (426)
|+|+||+.+|+++. ++|++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++.+++||.+
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~gG~~ 78 (98)
T 1yx5_B 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGRD 78 (98)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEECCCCC--
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEeCCCCCc
Confidence 89999999999999 99999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred eEeecccCcEEEEe
Q 036691 142 IFVKAATGEIVNLE 155 (426)
Q Consensus 142 i~Vk~~~gk~~~i~ 155 (426)
++.++.+|+.-.++
T Consensus 79 i~~~~v~~~~~~~~ 92 (98)
T 1yx5_B 79 PNSSSVDKLAAALE 92 (98)
T ss_dssp --------------
T ss_pred CccccCCCchhhhh
Confidence 99999887765554
No 34
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=3.6e-18 Score=133.04 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=72.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCee-cCCCCccccCCCCCCCEEEEEeec
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKR-LFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~-L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
..|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+. |+|++||++|||++|++|++++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 469999999999999999999999999999999999999999999999999 999999999999999999998763
No 35
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-18 Score=143.94 Aligned_cols=81 Identities=44% Similarity=0.649 Sum_probs=77.8
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
...++|+|++++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+.+++||.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred c
Q 036691 363 I 363 (426)
Q Consensus 363 ~ 363 (426)
.
T Consensus 87 ~ 87 (114)
T 2kdi_A 87 M 87 (114)
T ss_dssp C
T ss_pred e
Confidence 4
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=135.75 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=72.7
Q ss_pred CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
++..|+|+|++ |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|++++|++||
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 35679999998 8999999999999999999999999999999999999999999999999999999999999999997
No 37
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.74 E-value=3.7e-18 Score=131.49 Aligned_cols=77 Identities=12% Similarity=0.206 Sum_probs=74.2
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
.|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.||++|+|+++++|+++++++||
T Consensus 3 ~m~i~vk~~~g~~~~-~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d-~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCC-CCCHHHcCCCCCCEEEEEEeccCC
Confidence 589999999999999 99999999999999999999999999999999999999 999999999999999999999886
No 38
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.74 E-value=8.2e-18 Score=138.16 Aligned_cols=78 Identities=50% Similarity=0.715 Sum_probs=75.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..|+|+|++++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||++|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999997
No 39
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=5e-18 Score=133.49 Aligned_cols=79 Identities=29% Similarity=0.411 Sum_probs=76.4
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
...|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++++++|
T Consensus 10 ~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d-~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp CCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCT-TSBGGGGTCCTTCEEEECCCCCC
T ss_pred CCcEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCC-CCcHHHcCCCCCCEEEEEEeCCC
Confidence 46899999999999999 99999999999999999999999999999999999999 99999999999999999999998
Q ss_pred e
Q 036691 139 I 139 (426)
Q Consensus 139 g 139 (426)
|
T Consensus 88 G 88 (88)
T 3dbh_I 88 G 88 (88)
T ss_dssp C
T ss_pred C
Confidence 6
No 40
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=136.19 Aligned_cols=78 Identities=50% Similarity=0.715 Sum_probs=75.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..|+|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++||+++|++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999987
No 41
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.2e-17 Score=128.23 Aligned_cols=74 Identities=22% Similarity=0.455 Sum_probs=71.5
Q ss_pred CcEEEEEecCCcEE-EEE-EcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691 285 PFQIFVKTWGGKTI-TLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 285 ~m~i~v~~~~g~~~-~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
.|+|+|++.+|+++ +++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++||+++|+
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 69999999999985 999 999999999999999999999999999999999999999999999999999999886
No 42
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.74 E-value=5.6e-18 Score=135.75 Aligned_cols=80 Identities=11% Similarity=0.184 Sum_probs=76.5
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.+..|+|+||+.+|+++. ++|.+++||.+||++|++++|+|+++|+|+|+|+.|+| +.||++|+|+++++||++++++
T Consensus 18 ~~~~m~I~Vk~~~g~~~~-l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d-~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp -CCEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCHHHHTCCTTCEEEEEESSS
T ss_pred CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCC-CCCHHHCCCCCCCEEEEEEecC
Confidence 456799999999999999 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ce
Q 036691 138 EI 139 (426)
Q Consensus 138 ~g 139 (426)
||
T Consensus 96 GG 97 (97)
T 1wyw_B 96 GG 97 (97)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 43
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.73 E-value=1e-17 Score=127.71 Aligned_cols=76 Identities=30% Similarity=0.455 Sum_probs=72.4
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|+|+||+.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|++.++++||
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEeCCCC
Confidence 79999999999999 99999999999999999999999999999999999999 999999999999999999999886
No 44
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.73 E-value=1.3e-17 Score=135.76 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=70.3
Q ss_pred cEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCC-------CCEEEEEee
Q 036691 286 FQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQK-------HSTLHMVLA 357 (426)
Q Consensus 286 m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~-------~~ti~l~~~ 357 (426)
|.+|++...++ ++.+++.+++||.+||++|+.++|+|+++|||+|+|++|+|++||++|||++ ++||||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56777777676 8889999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCC
Q 036691 358 PSSR 361 (426)
Q Consensus 358 ~~gg 361 (426)
..|.
T Consensus 81 ~~~~ 84 (118)
T 4ajy_B 81 ADDT 84 (118)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8443
No 45
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.3e-17 Score=130.79 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=77.5
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.++.|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++++++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d-~~tL~~~~i~~g~~i~l~~~~~ 81 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQD-WLGLGIYGIQDSDTLILSKKKG 81 (87)
T ss_dssp CSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCS-SSBHHHHTCCTTEEEEEEECSC
T ss_pred CCCCEEEEEEcCCCCEEE-EEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccC-CCCHHHCCCCCCCEEEEEEecc
Confidence 357899999999999999 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cee
Q 036691 138 EIL 140 (426)
Q Consensus 138 ~g~ 140 (426)
||.
T Consensus 82 GG~ 84 (87)
T 1wh3_A 82 SGP 84 (87)
T ss_dssp CCS
T ss_pred CCC
Confidence 874
No 46
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.5e-18 Score=134.73 Aligned_cols=80 Identities=39% Similarity=0.533 Sum_probs=75.4
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
....|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|++++|++
T Consensus 19 ~~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp ---CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TCBSGGGTCCTTEEEEEECBCS
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEecC
Confidence 346899999999999999 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ce
Q 036691 138 EI 139 (426)
Q Consensus 138 ~g 139 (426)
||
T Consensus 97 GG 98 (98)
T 4hcn_B 97 GG 98 (98)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 47
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=1.4e-17 Score=132.53 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=75.9
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccc-ccccccccccCcEEEEEeec
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDT-ATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~-~tL~~y~I~~~s~i~l~~~~ 136 (426)
.+..|+|+||+++| ++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| + .+|++|+|+++++|+|++++
T Consensus 12 ~~~~~~I~Vk~~~~-~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFT-VEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELAD-DYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp SSCCEEEEEECSSC-EEE-EEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECC-TTSBHHHHTCCTTEEEEEEECC
T ss_pred CCCCEEEEEEcCCc-EEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCC-CcccHHHCCCCCCCEEEEEEeC
Confidence 46789999999888 888 99999999999999999999999999999999999999 8 99999999999999999999
Q ss_pred ccee
Q 036691 137 KEIL 140 (426)
Q Consensus 137 ~~g~ 140 (426)
+||.
T Consensus 89 ~gg~ 92 (94)
T 2kan_A 89 INRA 92 (94)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9874
No 48
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.73 E-value=1.3e-17 Score=136.53 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=69.3
Q ss_pred cEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCC-------CCCEEEEEee
Q 036691 286 FQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ-------KHSTLHMVLA 357 (426)
Q Consensus 286 m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~-------~~~ti~l~~~ 357 (426)
|+++++...++ +++++|++++||++||++|++++|||+++|||+|+|++|+|++||++|||+ +++||||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 56677666665 699999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCCc
Q 036691 358 PSSRI 362 (426)
Q Consensus 358 ~~gg~ 362 (426)
.||.
T Consensus 81 -~~g~ 84 (118)
T 2fnj_B 81 -ADDT 84 (118)
T ss_dssp -SSSC
T ss_pred -CCCc
Confidence 5553
No 49
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.6e-18 Score=132.83 Aligned_cols=73 Identities=18% Similarity=0.379 Sum_probs=69.5
Q ss_pred cEEEEEecCCcEEEEEEc--CCCcHHHHHHHH-HhHhCCCCcceEEEEcCeecCCCCccccCCC-CCCCEEEEEeec
Q 036691 286 FQIFVKTWGGKTITLDVQ--PYNTVQDVKVKL-FDKLQTPLHLQSIVFAGKRLFENHVLARYNI-QKHSTLHMVLAP 358 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~--~~~tV~~lK~~i-~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I-~~~~ti~l~~~~ 358 (426)
|+|+||+++|++++++++ +++||++||++| +++.|+|+++|||+|+|+.|+|+.||++|+| ++|++|+++++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999998866 999999999999 9999999999999999999999999999999 799999998864
No 50
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.72 E-value=1.5e-17 Score=131.39 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=74.4
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.+..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+| +|++|||+++.+
T Consensus 2 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d-~~tL~~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD-DKKLQEYNV-GGKVIHLVERAP 78 (90)
T ss_dssp CCCEEEEEEEETTCCEEE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTC-TTEEEEEEECCC
T ss_pred CCcEEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCC-CCCHHHcCC-CCcEEEEEecCC
Confidence 357899999999999999 99999999999999999999999999999999999999 999999999 899999999977
Q ss_pred ce
Q 036691 138 EI 139 (426)
Q Consensus 138 ~g 139 (426)
++
T Consensus 79 ~~ 80 (90)
T 4dwf_A 79 PQ 80 (90)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 51
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=8.1e-18 Score=133.86 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=69.6
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
..|+|+||+++|+++. ++|+|++||.+||++|++++|+|+++|||+|+|++|+| +.+|++|+|+++++|+|.
T Consensus 27 ~mm~I~VKtl~Gk~i~-lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D-~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKD-HVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCS-SCBHHHHTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCC-CCCHHHcCCCCCCEEEEE
Confidence 3599999999999999 99999999999999999999999999999999999999 999999999999999985
No 52
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=9.2e-18 Score=132.07 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=72.0
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++.+++||
T Consensus 3 ~~m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED-QLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEE-EEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCT-TSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEEcCCC
Confidence 4799999999999999 99999999999999999999999999999999999999 999999999999999999998887
Q ss_pred e
Q 036691 140 L 140 (426)
Q Consensus 140 ~ 140 (426)
.
T Consensus 81 ~ 81 (88)
T 2hj8_A 81 L 81 (88)
T ss_dssp -
T ss_pred c
Confidence 4
No 53
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.5e-17 Score=132.37 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=69.1
Q ss_pred EEEEecC----CcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 288 IFVKTWG----GKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 288 i~v~~~~----g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
|.|+..+ +++++++|++++||++||++|++++|+|+++|+|+|+||+|+|+.||++|+|++|++| ++++++|...
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~~ 96 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSSG 96 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCCc
Confidence 4555555 7899999999999999999999999999999999999999999999999999999999 8888888754
Q ss_pred c
Q 036691 364 E 364 (426)
Q Consensus 364 ~ 364 (426)
+
T Consensus 97 ~ 97 (100)
T 1wju_A 97 P 97 (100)
T ss_dssp S
T ss_pred c
Confidence 3
No 54
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.72 E-value=2.1e-17 Score=130.82 Aligned_cols=77 Identities=39% Similarity=0.590 Sum_probs=74.1
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
+..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|++++|++
T Consensus 15 ~~~m~i~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCC-cCcHHHCCCCCCCEEEEEEecC
Confidence 47899999999999999 99999999999999999999999999999999999999 9999999999999999998865
No 55
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.4e-17 Score=132.38 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=74.7
Q ss_pred CCcEEEEEecCCc--EEEEEEcCCCcHHHHHHHHHhHh--CCCCcceEEEEcCeecCCCCccccC--CCCCCCEEEEEee
Q 036691 284 SPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDKL--QTPLHLQSIVFAGKRLFENHVLARY--NIQKHSTLHMVLA 357 (426)
Q Consensus 284 ~~m~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~L~~~gk~L~d~~tL~~y--~I~~~~ti~l~~~ 357 (426)
..|+|+|++.+|+ ++++++++++||++||++|++++ |+|+++|+|+|+|+.|+|+.+|++| +|+++++|||+++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4699999999998 67778889999999999999998 9999999999999999999999999 9999999999999
Q ss_pred cCCCc
Q 036691 358 PSSRI 362 (426)
Q Consensus 358 ~~gg~ 362 (426)
++||.
T Consensus 86 ~~gg~ 90 (93)
T 1wgd_A 86 VKSGP 90 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99984
No 56
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.3e-17 Score=126.62 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=71.1
Q ss_pred CceeEEEEcCCCcee-EEEE-EcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 60 SEMKLFVKIPTNQTA-TVVE-AMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~-~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
++|+|+||+.+|+++ . ++ |++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++|+
T Consensus 1 g~m~i~Vk~~~g~~~~~-l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d-~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMED-GHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEE-EeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEeC
Confidence 479999999999996 8 99 999999999999999999999999999999999999 999999999999999998875
No 57
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=1.6e-17 Score=129.34 Aligned_cols=74 Identities=27% Similarity=0.292 Sum_probs=71.5
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeE-eecccccccccccccCcEEEEEee
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKL-LKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
+.|+|+||+.+|+++. ++|++++||++||++|++++|+|+++|+|+|+|+. |+| +.+|++|+|++|++|+++++
T Consensus 9 ~~~~i~vk~l~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D-~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFE-LEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRE-DLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCS-SSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCC-cCCHHHcCCCCCCEEEEEEc
Confidence 5799999999999999 99999999999999999999999999999999999 999 99999999999999999876
No 58
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.4e-17 Score=130.01 Aligned_cols=79 Identities=34% Similarity=0.472 Sum_probs=72.8
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
+.|+|+||+.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|++++|++||
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d-~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTII-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCT-TCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCC-CCCHHHCCCCCCCEEEEEEeccCC
Confidence 4699999999999999 99999999999999999999999999999999999999 999999999999999999999987
Q ss_pred e
Q 036691 140 L 140 (426)
Q Consensus 140 ~ 140 (426)
.
T Consensus 80 ~ 80 (85)
T 3n3k_B 80 G 80 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 59
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.71 E-value=3.6e-17 Score=131.36 Aligned_cols=78 Identities=50% Similarity=0.696 Sum_probs=74.7
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
|+|+|++.+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+++.+.+||..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~ 78 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRD 78 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC--
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998854
No 60
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.71 E-value=2.8e-17 Score=136.04 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=75.1
Q ss_pred CCCCcEEEEEecCCcEE-EEEEcCCCcHHHHHHHH-----HhHhCCCC--cceEEEEcCeecCCCCccccCCCCCC----
Q 036691 282 LPSPFQIFVKTWGGKTI-TLDVQPYNTVQDVKVKL-----FDKLQTPL--HLQSIVFAGKRLFENHVLARYNIQKH---- 349 (426)
Q Consensus 282 ~~~~m~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i-----~~~~gip~--~~q~L~~~gk~L~d~~tL~~y~I~~~---- 349 (426)
+...|+|+|++.+|+.+ +++++|++||++||++| ++++|+|+ ++|||||+||.|+|++||++|+|+.+
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTT
T ss_pred hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccC
Confidence 34689999999999888 79999999999999999 56778997 89999999999999999999999998
Q ss_pred --CEEEEEeecCCCcc
Q 036691 350 --STLHMVLAPSSRII 363 (426)
Q Consensus 350 --~ti~l~~~~~gg~~ 363 (426)
+|+||+++++||..
T Consensus 93 ~v~tmhlVlrl~g~~k 108 (126)
T 1se9_A 93 AVTTMHVIIQAPVTEK 108 (126)
T ss_dssp CCEEEEEEECCCSSCC
T ss_pred CcEEEEEEeccCCccc
Confidence 78999999998854
No 61
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.71 E-value=2.3e-17 Score=131.89 Aligned_cols=81 Identities=40% Similarity=0.581 Sum_probs=73.8
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL 140 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~ 140 (426)
.|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++++++||.
T Consensus 1 gm~i~vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d-~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 489999999999999 99999999999999999999999999999999999999 9999999999999999999999997
Q ss_pred eeE
Q 036691 141 SIF 143 (426)
Q Consensus 141 ~i~ 143 (426)
...
T Consensus 79 ~~~ 81 (96)
T 3k9o_B 79 DLR 81 (96)
T ss_dssp ---
T ss_pred ccc
Confidence 653
No 62
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2e-17 Score=130.10 Aligned_cols=78 Identities=41% Similarity=0.586 Sum_probs=70.1
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
..|+|+|++.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++++++||
T Consensus 8 ~~~~i~v~~~~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFT-VEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp --CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBSGGGTCCTTCEEEEEC-----
T ss_pred cceEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4799999999999999 99999999999999999999999999999999999999 999999999999999999999987
No 63
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.9e-17 Score=128.08 Aligned_cols=79 Identities=38% Similarity=0.515 Sum_probs=75.1
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
+.|+|+||+.+|+++. +++++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++++++||
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d-~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEECcCC
Confidence 4799999999999999 99999999999999999999999999999999999999 999999999999999999999986
Q ss_pred e
Q 036691 140 L 140 (426)
Q Consensus 140 ~ 140 (426)
.
T Consensus 80 ~ 80 (85)
T 3mtn_B 80 G 80 (85)
T ss_dssp -
T ss_pred C
Confidence 3
No 64
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.71 E-value=3e-17 Score=125.07 Aligned_cols=76 Identities=42% Similarity=0.610 Sum_probs=73.9
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|+|+||+.+|+++. +++++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++|++|++..+++||
T Consensus 1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCC-CCcHHHcCCCCCCEEEEEEeCCCC
Confidence 79999999999999 99999999999999999999999999999999999999 999999999999999999999886
No 65
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.71 E-value=3.1e-17 Score=144.66 Aligned_cols=78 Identities=49% Similarity=0.646 Sum_probs=74.2
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||++|++||..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k 78 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGG 78 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999855
No 66
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.5e-17 Score=128.97 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCceeEEEEcCCC-ceeEEE-EEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 59 LSEMKLFVKIPTN-QTATVV-EAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 59 ~~~m~i~Vk~~~g-~~~~~~-~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
...|+|+||+.+| +++. + +|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||+++++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~-l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLEN-GYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp SSCEEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCS-SSBHHHHTCCTTCEEEEEECC
T ss_pred CCcEEEEEEECCCCceEE-EEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCC-CCCHHHCCCCCCCEEEEEEeC
Confidence 3679999999999 6999 9 5999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccee
Q 036691 137 KEIL 140 (426)
Q Consensus 137 ~~g~ 140 (426)
+||.
T Consensus 83 ~gG~ 86 (89)
T 1wy8_A 83 DSGP 86 (89)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9874
No 67
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.2e-17 Score=134.56 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=74.0
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc---------------ceEEEEcCeecC-CCCccccCCCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH---------------LQSIVFAGKRLF-ENHVLARYNIQ 347 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~---------------~q~L~~~gk~L~-d~~tL~~y~I~ 347 (426)
..|+|+|++++|++++++|.+++||++||++|+++.|+|+. +|+|+|+|+.|. |+.||++|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 45999999999999999999999999999999999999984 569999999996 67999999999
Q ss_pred CCCEEEEEeecCCCcc
Q 036691 348 KHSTLHMVLAPSSRII 363 (426)
Q Consensus 348 ~~~ti~l~~~~~gg~~ 363 (426)
+|++||++.+++|...
T Consensus 86 ~g~~l~lv~~lr~~~~ 101 (105)
T 1v2y_A 86 NRDEVSFIKKLGQKSG 101 (105)
T ss_dssp SSEEEEEEECSCSCCC
T ss_pred CCCEEEEEehhccCCC
Confidence 9999999999988743
No 68
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=6.8e-17 Score=128.93 Aligned_cols=77 Identities=25% Similarity=0.430 Sum_probs=73.0
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhH---hCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK---LQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
|+|+|++.+|++++++|++++||++||++|+++ +|+|+++|+|+|+|+.|+|+.||++|||++|++|+++.+...+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 89999999999999999999999999999999999998765553
No 69
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.71 E-value=6.1e-17 Score=126.39 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=71.8
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhH---hCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK---LQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
+..|+|+|++.+|+++++++++++||++||++|+++ +|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 568999999999999999999999999999999998 8999999999999999999999999999999999998864
No 70
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=131.49 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=72.0
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
++..|+|+||+ |+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|++++|++
T Consensus 16 ~~~~m~I~Vk~--g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHT-FEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLED-EATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp ----CEEEEES--SSEEE-EECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCT-TSBHHHHTCCSSCEEEEECCCC
T ss_pred CCCcEEEEEEC--CCEEE-EEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEecC
Confidence 45689999998 89999 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ce
Q 036691 138 EI 139 (426)
Q Consensus 138 ~g 139 (426)
||
T Consensus 92 GG 93 (93)
T 2l7r_A 92 GG 93 (93)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 71
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=2.9e-17 Score=134.95 Aligned_cols=81 Identities=27% Similarity=0.309 Sum_probs=78.0
Q ss_pred CCCCcEEEEEec---CCcEEEEEEcC-CCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691 282 LPSPFQIFVKTW---GGKTITLDVQP-YNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 282 ~~~~m~i~v~~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
.+.+|+|+|+++ +|+++++++++ ++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 567899999999 89999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 036691 358 PSSRI 362 (426)
Q Consensus 358 ~~gg~ 362 (426)
++||.
T Consensus 104 ~~GGk 108 (111)
T 1we6_A 104 ERSGP 108 (111)
T ss_dssp SCCSS
T ss_pred cCCCC
Confidence 99984
No 72
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=126.09 Aligned_cols=77 Identities=31% Similarity=0.487 Sum_probs=73.4
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
+..|+|+|++++|+++++++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++||++++++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999998763
No 73
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.70 E-value=2.2e-17 Score=147.16 Aligned_cols=84 Identities=39% Similarity=0.533 Sum_probs=81.4
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
-.|+|+||+++|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|||+++++||
T Consensus 104 ~eMqI~VKtl~Gkt~~-l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D-~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCT-TCBGGGGTCCTTCEEEECCCCCCC
T ss_pred cceeeeeecCCCCEEE-EEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCC-CCCHHHCCCCCCCEEEEEEEcCCC
Confidence 3699999999999999 99999999999999999999999999999999999999 999999999999999999999999
Q ss_pred eeeEee
Q 036691 140 LSIFVK 145 (426)
Q Consensus 140 ~~i~Vk 145 (426)
..+|||
T Consensus 182 ~~~fvk 187 (189)
T 3q3f_A 182 GQTFTK 187 (189)
T ss_dssp CCCCCC
T ss_pred CcceEe
Confidence 999886
No 74
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.4e-17 Score=130.06 Aligned_cols=73 Identities=19% Similarity=0.354 Sum_probs=68.9
Q ss_pred eeEEEEcCCCceeEEEEEc--CCCcHHHHHHHH-HHHhCCCCCceEEEeCCeEeeccccccccccc-ccCcEEEEEeec
Q 036691 62 MKLFVKIPTNQTATVVEAM--PYHTVQNIKTMI-QVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI-KSESIIHLVFCP 136 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~--~~~tV~~lK~~I-~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I-~~~s~i~l~~~~ 136 (426)
|+|+||+++|++++ ++|+ +++||.+||++| ++++|+|+++|||+|+|+.|+| +.+|++|+| ++|++|++..+.
T Consensus 2 mqI~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D-~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHD-NLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEE-CCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCT-TCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEE-EEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcC-cCCHHHcCCCCCCCEEEEEcCC
Confidence 89999999999998 8866 999999999999 9999999999999999999999 999999999 799999997763
No 75
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.70 E-value=4.5e-17 Score=130.01 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=70.1
Q ss_pred CCCcEEEEEecCCcEEEE--EEcCCCcHHHHHHHH-HhHhCCCCcceEEEEcCeecCCCCccccCCC-CCCCEEEEEeec
Q 036691 283 PSPFQIFVKTWGGKTITL--DVQPYNTVQDVKVKL-FDKLQTPLHLQSIVFAGKRLFENHVLARYNI-QKHSTLHMVLAP 358 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l--~v~~~~tV~~lK~~i-~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I-~~~~ti~l~~~~ 358 (426)
+..|+|+|++++|+++++ +|++++||++||++| +++.|+|+++|||+|+|+.|+|+.||++|+| ++|++|+++++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 468999999999998777 566999999999999 8889999999999999999999999999999 999999999853
No 76
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=7.7e-17 Score=132.24 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHh------HhCC--CCcceEEEEcCeecCCCCccccCCCCCC--CEE
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFD------KLQT--PLHLQSIVFAGKRLFENHVLARYNIQKH--STL 352 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gi--p~~~q~L~~~gk~L~d~~tL~~y~I~~~--~ti 352 (426)
...|+|+|++++|++++++|++++||++||++|++ ++|+ |+++|||+|+||.|+|++||++|+|+.+ +||
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45699999999999999999999999999999999 6675 6999999999999999999999999766 679
Q ss_pred EEEeecCCCc
Q 036691 353 HMVLAPSSRI 362 (426)
Q Consensus 353 ~l~~~~~gg~ 362 (426)
||++|+.++.
T Consensus 94 hLvlr~~~~~ 103 (116)
T 1wgh_A 94 HLVARETLPE 103 (116)
T ss_dssp EEEECSSCSS
T ss_pred EEEccCCCCC
Confidence 9998887654
No 77
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.70 E-value=5.1e-17 Score=133.40 Aligned_cols=78 Identities=41% Similarity=0.586 Sum_probs=75.1
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||+++|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEecCCC
Confidence 5799999999999999 99999999999999999999999999999999999999 999999999999999999999986
No 78
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.70 E-value=1.3e-19 Score=152.78 Aligned_cols=102 Identities=43% Similarity=0.585 Sum_probs=13.6
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcccC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIEL 365 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~~~ 365 (426)
|+|+|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|||+++++||..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~-- 78 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGII-- 78 (128)
T ss_dssp ----------------------------------------------------------------------------CC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCC--
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CceeeccccCCCCCHHHHHHHHHHh----cCcc
Q 036691 366 PLIFIDPSISLSISISEVKEMAKVK----FQAA 394 (426)
Q Consensus 366 ~~~~~~~~~~~~~~v~~~k~~i~~~----~~~~ 394 (426)
..+....+...++.++||++ +|+.
T Consensus 79 -----~~sl~~la~k~n~~~~ic~~~~~~~~~~ 106 (128)
T 3u5e_m 79 -----EPSLKALASKYNCDKSVCRKCYARLPPR 106 (128)
T ss_dssp -----CHHHHHHHHHHHTSCEEETTTCCEECTT
T ss_pred -----ChhHHHHHHHhhcceEeeccccccCCch
Confidence 23333333445556677766 6664
No 79
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.53 E-value=1.2e-18 Score=133.16 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=73.3
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS 360 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g 360 (426)
|+|+|++.+|+++++++++++||++||++|++++|+|++.|+|+|+|+.|+|+.||++|||++|++||+++|++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999986
No 80
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.6e-17 Score=133.18 Aligned_cols=76 Identities=16% Similarity=0.361 Sum_probs=70.7
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|+|++++|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++....
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~ 77 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKS 77 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999976543
No 81
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.69 E-value=5.4e-17 Score=144.69 Aligned_cols=79 Identities=49% Similarity=0.651 Sum_probs=77.1
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
.|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|||+++++||..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQ 183 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999965
No 82
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.69 E-value=6.5e-17 Score=142.63 Aligned_cols=82 Identities=39% Similarity=0.527 Sum_probs=76.4
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS 141 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~ 141 (426)
|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++|++||..
T Consensus 1 MqI~Vk~~~Gk~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~y~I~~gstI~Lvlrl~GG~k 78 (169)
T 3l0w_B 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGGG 78 (169)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCT-TSBGGGGTCCTTCEEEEEECCCC---
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccC-cCcHHHcCCCCCCEEEEEEEeccccc
Confidence 89999999999999 99999999999999999999999999999999999999 99999999999999999999999877
Q ss_pred eEee
Q 036691 142 IFVK 145 (426)
Q Consensus 142 i~Vk 145 (426)
..|+
T Consensus 79 ~~vk 82 (169)
T 3l0w_B 79 ETIK 82 (169)
T ss_dssp CCEE
T ss_pred cccc
Confidence 6665
No 83
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=7.9e-17 Score=129.68 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=75.7
Q ss_pred CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
.+..|+|+|++.+|+ ++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+++++++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 456799999999886 7999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 036691 362 I 362 (426)
Q Consensus 362 ~ 362 (426)
+
T Consensus 98 p 98 (100)
T 1yqb_A 98 A 98 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.5e-17 Score=132.71 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=73.3
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCC---------------CceEEEeCCeEeeccccccccccc
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQS---------------DQFTLVYDGKLLKEDTATMTSMNI 124 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~---------------~~q~L~~~g~~L~d~~~tL~~y~I 124 (426)
..|+|+|++++|++++ ++|++++||.+||++|++++|+|+ ++|+|+|+|+.|.||+.+|++|+|
T Consensus 6 ~~M~I~Vk~l~g~~~~-v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CcEEEEEEecCCCEEE-EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 4699999999999999 999999999999999999999987 467999999999754899999999
Q ss_pred ccCcEEEEEeeccce
Q 036691 125 KSESIIHLVFCPKEI 139 (426)
Q Consensus 125 ~~~s~i~l~~~~~~g 139 (426)
++|++||++.++++.
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999998864
No 85
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.69 E-value=4.1e-17 Score=133.50 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=67.8
Q ss_pred eeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccc-------cCcEEEEE
Q 036691 62 MKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIK-------SESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~-------~~s~i~l~ 133 (426)
|++||+...|+ ++. ++|++++||.+||++|++++|+|+++|||+|+|+.|+| ++||++|||+ ++++|||+
T Consensus 1 M~mfl~ir~~ktti~-lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD-~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDD-GKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCCEEEE-EEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCC-CCCHHHcCcccccccCCCCCEEEEE
Confidence 56666666676 577 99999999999999999999999999999999999999 9999999999 79999999
Q ss_pred eeccce
Q 036691 134 FCPKEI 139 (426)
Q Consensus 134 ~~~~~g 139 (426)
+| .||
T Consensus 79 lr-~~g 83 (118)
T 2fnj_B 79 FR-ADD 83 (118)
T ss_dssp EB-SSS
T ss_pred ec-CCC
Confidence 99 554
No 86
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=6.1e-17 Score=133.98 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=74.6
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHH-----HHHhCCCC--CceEEEeCCeEeecccccccccccccC---
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMI-----QVKEGIQS--DQFTLVYDGKLLKEDTATMTSMNIKSE--- 127 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I-----~~~~gip~--~~q~L~~~g~~L~d~~~tL~~y~I~~~--- 127 (426)
..+.|+|+||+++|+.+.++++++++||.+||++| ++++|+|+ ++|||+|+|++|+| +.||++|+|+++
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD-~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN-SKTVKDYRSPVSNLA 91 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCT-TSBGGGGSCCTTSCT
T ss_pred hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcC-CCcHHHcCCCcCCcc
Confidence 34789999999999998349999999999999999 66788987 89999999999999 999999999998
Q ss_pred ---cEEEEEeecccee
Q 036691 128 ---SIIHLVFCPKEIL 140 (426)
Q Consensus 128 ---s~i~l~~~~~~g~ 140 (426)
+++||++++++|-
T Consensus 92 ~~v~tmhlVlrl~g~~ 107 (126)
T 1se9_A 92 GAVTTMHVIIQAPVTE 107 (126)
T ss_dssp TCCEEEEEEECCCSSC
T ss_pred CCcEEEEEEeccCCcc
Confidence 7899999999763
No 87
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=132.43 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=73.6
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHh------HhCCC--CcceEEEEcCeecCCCCccccCCCCCCC--EEE
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFD------KLQTP--LHLQSIVFAGKRLFENHVLARYNIQKHS--TLH 353 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gip--~~~q~L~~~gk~L~d~~tL~~y~I~~~~--ti~ 353 (426)
..|.|+|++++|++++++|+|++||++||++|++ ++|+| +++|||+|+||.|+|++||++|+|+.++ |+|
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4589999999999999999999999999999999 78884 8999999999999999999999999776 789
Q ss_pred EEeecCCCcc
Q 036691 354 MVLAPSSRII 363 (426)
Q Consensus 354 l~~~~~gg~~ 363 (426)
|++|++++..
T Consensus 96 lv~r~~~~~~ 105 (125)
T 2gow_A 96 LVARETLPEP 105 (125)
T ss_dssp EEECSCCSSS
T ss_pred EEecCCCCcc
Confidence 9999987654
No 88
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.1e-17 Score=133.28 Aligned_cols=90 Identities=29% Similarity=0.441 Sum_probs=68.4
Q ss_pred cccCCCCCCCeEEEEEecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccc
Q 036691 41 LVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMT 120 (426)
Q Consensus 41 l~~y~i~~~~~l~l~~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~ 120 (426)
.++|.| +.|.+|.++....|.|+||+ +|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|+
T Consensus 10 ~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~ 84 (101)
T 3m63_B 10 MSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD-DQTVE 84 (101)
T ss_dssp ---------------------CCEEEEC-SSCCCC-BCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCT-TSBTT
T ss_pred ccccCC--CcceeecccCCcEEEEEEEE-CCEEEE-EEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCC-cCcHH
Confidence 889998 56777777777889999998 899999 99999999999999999999999999999999999999 99999
Q ss_pred ccccccCcEEEEEee
Q 036691 121 SMNIKSESIIHLVFC 135 (426)
Q Consensus 121 ~y~I~~~s~i~l~~~ 135 (426)
+|+|++|++|+|+.+
T Consensus 85 ~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 85 SYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTCCTTEEEEECCC
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999999765
No 89
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=7.1e-17 Score=128.33 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=73.7
Q ss_pred CCceeEEEEcCCCc--eeEEEEEcCCCcHHHHHHHHHHHh--CCCCCceEEEeCCeEeeccccccccc--ccccCcEEEE
Q 036691 59 LSEMKLFVKIPTNQ--TATVVEAMPYHTVQNIKTMIQVKE--GIQSDQFTLVYDGKLLKEDTATMTSM--NIKSESIIHL 132 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~--~~~~~~v~~~~tV~~lK~~I~~~~--gip~~~q~L~~~g~~L~d~~~tL~~y--~I~~~s~i~l 132 (426)
...|+|+||+.+|+ ++. +++++++||.+||++|++++ |+|+++|||+|+|+.|+| +.+|++| +|+++++|||
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~-v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D-~~tL~~~~~~i~~~~~i~l 82 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLD-HQCLRDLLPKQEKRHVLHL 82 (93)
T ss_dssp SCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCS-SSCHHHHSCSSSCSEEEEE
T ss_pred CcEEEEEEEeCCCCeEEEE-EecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcC-cCCHHHHhcCCCCCCEEEE
Confidence 46799999999998 666 77779999999999999998 999999999999999999 9999999 9999999999
Q ss_pred Eeeccce
Q 036691 133 VFCPKEI 139 (426)
Q Consensus 133 ~~~~~~g 139 (426)
+++++||
T Consensus 83 v~~~~gg 89 (93)
T 1wgd_A 83 VCNVKSG 89 (93)
T ss_dssp ECCCCCC
T ss_pred EeCCCCC
Confidence 9999886
No 90
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2e-17 Score=133.44 Aligned_cols=92 Identities=23% Similarity=0.384 Sum_probs=67.9
Q ss_pred CccccccCCCCCccccc-CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCcccc
Q 036691 265 CKTLASYGIKNNYVLDV-LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343 (426)
Q Consensus 265 ~~tL~~y~I~~~~~l~l-~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~ 343 (426)
..++++|.|+.-..+.+ -.-.|.|+|++ +|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++
T Consensus 7 ~~~~~~~~~~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ 85 (101)
T 3m63_B 7 HHPMSDYDIPTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES 85 (101)
T ss_dssp ----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTT
T ss_pred cCCccccCCCcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHH
Confidence 35788999987777776 23346788887 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEee
Q 036691 344 YNIQKHSTLHMVLA 357 (426)
Q Consensus 344 y~I~~~~ti~l~~~ 357 (426)
|||++|++|+|+.+
T Consensus 86 ~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 86 YHIQDGHSVHLVKS 99 (101)
T ss_dssp TTCCTTEEEEECCC
T ss_pred CCCCCCCEEEEEeC
Confidence 99999999999864
No 91
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.68 E-value=8.8e-17 Score=132.05 Aligned_cols=78 Identities=41% Similarity=0.586 Sum_probs=75.0
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
..|+|+||+.+|+++. ++|++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|+++++||+++|++||
T Consensus 34 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCS-SCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5899999999999999 99999999999999999999999999999999999999 999999999999999999999986
No 92
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=5.2e-17 Score=129.91 Aligned_cols=79 Identities=22% Similarity=0.242 Sum_probs=75.6
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
+..|+|+|++. |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|||+++++||.
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 35699999998 99999999999999999999999999999999999999999999999999999999999999999884
No 93
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.67 E-value=1.2e-16 Score=127.59 Aligned_cols=77 Identities=17% Similarity=0.334 Sum_probs=69.8
Q ss_pred cCCceeEEEEcCCCceeEEE--EEcCCCcHHHHHHHH-HHHhCCCCCceEEEeCCeEeeccccccccccc-ccCcEEEEE
Q 036691 58 NLSEMKLFVKIPTNQTATVV--EAMPYHTVQNIKTMI-QVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI-KSESIIHLV 133 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~--~v~~~~tV~~lK~~I-~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I-~~~s~i~l~ 133 (426)
.++.|+|+||+++|++++ + +|++++||.+||++| ++++|+|+++|||+|+|+.|+| +.+|++|+| ++|++|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D-~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHD-NLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp --CCEEEEEEECSSSCEE-EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECT-TCBGGGSCCBTTBCEEEEE
T ss_pred CCCCEEEEEEcCCCCEEE-EEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcC-cCCHHHcCcCCCCCEEEEE
Confidence 357899999999999877 6 566999999999999 8889999999999999999999 999999999 999999997
Q ss_pred eec
Q 036691 134 FCP 136 (426)
Q Consensus 134 ~~~ 136 (426)
++.
T Consensus 94 vsk 96 (98)
T 4a20_A 94 IKP 96 (98)
T ss_dssp ECC
T ss_pred EeC
Confidence 753
No 94
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.67 E-value=2e-16 Score=123.41 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=71.4
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHH---hCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVK---EGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
+..|+|+||+.+|+++. ++|++++||.+||++|+++ +|+|+++|+|+|+|+.|+| +.+|++|+|++|++||++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~-~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD-DVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCT-TSBGGGGCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEE-EEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcC-CCCHHHcCCCCCCEEEEEEc
Confidence 57899999999999999 9999999999999999998 8999999999999999999 99999999999999999876
Q ss_pred c
Q 036691 136 P 136 (426)
Q Consensus 136 ~ 136 (426)
.
T Consensus 81 ~ 81 (85)
T 2wyq_A 81 K 81 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 95
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.8e-16 Score=129.13 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=74.5
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..|+|+|++.+|+++.++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+++...+
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999987655
No 96
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=2.1e-16 Score=129.60 Aligned_cols=79 Identities=16% Similarity=0.290 Sum_probs=72.1
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHH------HhCC--CCCceEEEeCCeEeecccccccccccccC--
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQV------KEGI--QSDQFTLVYDGKLLKEDTATMTSMNIKSE-- 127 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~------~~gi--p~~~q~L~~~g~~L~d~~~tL~~y~I~~~-- 127 (426)
+.+.|+|+||+++|++++ ++|++++||.+||++|++ ++|+ |+++|||+|+|++|+| +.||++|+|+.+
T Consensus 13 ~~~~m~I~vKtl~G~t~~-lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD-~~TL~~y~I~~~~~ 90 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG-NVTLGALKLPFGKT 90 (116)
T ss_dssp CSSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECS-SCBTTTTTCCSSCE
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCC-CCcHHHcCCCCCCc
Confidence 457899999999999999 999999999999999999 7785 6999999999999999 999999999766
Q ss_pred cEEEEEeeccc
Q 036691 128 SIIHLVFCPKE 138 (426)
Q Consensus 128 s~i~l~~~~~~ 138 (426)
+++||++|+..
T Consensus 91 ~tlhLvlr~~~ 101 (116)
T 1wgh_A 91 TVMHLVARETL 101 (116)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEccCCC
Confidence 68999888764
No 97
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.67 E-value=1.2e-16 Score=130.12 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=68.9
Q ss_pred eeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccccccc-------CcEEEEE
Q 036691 62 MKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKS-------ESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~-------~s~i~l~ 133 (426)
|.+|++...++ ++. +++++++||.+||++|++++|+|+++|||+|+|+.|+| ++||++|||++ +++|||+
T Consensus 1 m~vFl~Ikr~ktTI~-ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD-~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDD-GKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEE-EEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCC-cCCHHHcCCCcCcccCCCCCEEEEE
Confidence 56777777777 666 99999999999999999999999999999999999999 99999999999 9999999
Q ss_pred eeccc
Q 036691 134 FCPKE 138 (426)
Q Consensus 134 ~~~~~ 138 (426)
+|..|
T Consensus 79 lr~~~ 83 (118)
T 4ajy_B 79 FRADD 83 (118)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 99743
No 98
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=122.10 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=72.7
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
+..|+|+|++.+|+++. +++++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++++
T Consensus 5 ~~~m~i~vk~~~g~~~~-~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECS-LQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALAD-GKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSEEEEEEETTSCEEE-EEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCT-TSBGGGGTCCSSBCCEEECCC
T ss_pred CCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 46899999999999999 99999999999999999999999999999999999999 999999999999999998875
No 99
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.67 E-value=3.6e-16 Score=119.53 Aligned_cols=71 Identities=25% Similarity=0.462 Sum_probs=68.8
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
|+|+|++ +|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8899999 9999999999999999999999999999999999999999999999999999999999999865
No 100
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2e-16 Score=127.91 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=75.6
Q ss_pred CCcEEEEEecCC----cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC-CccccCCCCCCCEEEEEeec
Q 036691 284 SPFQIFVKTWGG----KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 284 ~~m~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~-~tL~~y~I~~~~ti~l~~~~ 358 (426)
..|+|+|++.++ ++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ +||++|+|++|++|||+.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 459999999754 7999999999999999999999999999999999999999988 79999999999999999999
Q ss_pred CCCcccC
Q 036691 359 SSRIIEL 365 (426)
Q Consensus 359 ~gg~~~~ 365 (426)
+||....
T Consensus 86 ~gg~~~~ 92 (102)
T 1v5o_A 86 NVGLRTP 92 (102)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 9986533
No 101
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=1.3e-16 Score=131.10 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=77.1
Q ss_pred cCCceeEEEEcC---CCceeEEEEEcC-CCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 58 NLSEMKLFVKIP---TNQTATVVEAMP-YHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 58 ~~~~m~i~Vk~~---~g~~~~~~~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
.++.|+|+|+++ +|+++. ++|++ ++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~-l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D-~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKD-NMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCT-TSBTTTTTCSSSCEEEEE
T ss_pred CCCcEEEEEEecccCCCcEEE-EEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCC-CCcHHHCCCCCCCEEEEE
Confidence 467899999998 899999 99998 999999999999999999999999999999999 999999999999999999
Q ss_pred eecccee
Q 036691 134 FCPKEIL 140 (426)
Q Consensus 134 ~~~~~g~ 140 (426)
++++||.
T Consensus 102 ~r~~GGk 108 (111)
T 1we6_A 102 LRERSGP 108 (111)
T ss_dssp CSSCCSS
T ss_pred EEcCCCC
Confidence 9999873
No 102
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.8e-16 Score=126.00 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=61.7
Q ss_pred CceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 71 NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 71 g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
|++++ ++|++++||.+||++|++++|+|+++|+|+|+|++|+| +.||++|+|++|++| ++++++|
T Consensus 29 ~~~~~-lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D-~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 29 DRKNL-LETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQL-GKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp SSSEE-EEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCT-TSBHHHHTCCSSEEE-EEECCCC
T ss_pred CcEEE-EEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCC-CCcHHHcCCCCCCEE-EEEEECC
Confidence 77899 99999999999999999999999999999999999999 999999999999999 5677775
No 103
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.47 E-value=7e-18 Score=128.88 Aligned_cols=75 Identities=24% Similarity=0.492 Sum_probs=72.7
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
|+|+||+.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++|++|
T Consensus 1 M~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPN-HLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999 99999999999999999999999999999999999999 99999999999999999999875
No 104
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.2e-16 Score=130.46 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=71.7
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
...|+|+|++. |++++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+.+++||.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 35699999998 99999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred c
Q 036691 363 I 363 (426)
Q Consensus 363 ~ 363 (426)
.
T Consensus 109 ~ 109 (125)
T 1j8c_A 109 S 109 (125)
T ss_dssp -
T ss_pred C
Confidence 4
No 105
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=124.55 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=73.6
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+..|+|+|++. |++++++|++++||++||++|++++|+|++.|+|+|+|+.|+|+.||++|||++|++|+|+.+++..
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 45799999998 8999999999999999999999999999999999999999999999999999999999999987643
No 106
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.65 E-value=3.6e-16 Score=129.19 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=76.2
Q ss_pred CCCCcEEEEEec----------CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCE
Q 036691 282 LPSPFQIFVKTW----------GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHST 351 (426)
Q Consensus 282 ~~~~m~i~v~~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~t 351 (426)
.+.+++|.|+.+ +|++++++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.||++|+|++|++
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV 101 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence 567788888876 4789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCc
Q 036691 352 LHMVLAPSSRI 362 (426)
Q Consensus 352 i~l~~~~~gg~ 362 (426)
|||+++++||.
T Consensus 102 i~lv~rl~GGk 112 (115)
T 1we7_A 102 IHLALKERSGP 112 (115)
T ss_dssp EEEEECCCSCC
T ss_pred EEEEEEcCCCC
Confidence 99999999984
No 107
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=5.5e-16 Score=123.62 Aligned_cols=74 Identities=20% Similarity=0.386 Sum_probs=70.7
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHH---hCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVK---EGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
|+|+||+.+|+++. ++|++++||.+||++|+++ +|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++.+..
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILND-DTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCT-TSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEE-EEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCC-cCcHHHCCCCCCCEEEEEEeCC
Confidence 89999999999999 9999999999999999999 8999999999999999999 9999999999999999988754
No 108
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.65 E-value=1.1e-17 Score=144.34 Aligned_cols=78 Identities=49% Similarity=0.656 Sum_probs=0.0
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||+++++||+.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgK 78 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGK 78 (152)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999965
No 109
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.7e-16 Score=125.73 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=74.2
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.+..|+|+||+.+|+ +. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++.+++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKD-PDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp CTTEEEEEEECSSCE-EE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCc-EE-EEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC-cCcHHHCCCCCCCEEEEEEcCC
Confidence 357899999999886 67 99999999999999999999999999999999999999 9999999999999999999987
Q ss_pred ce
Q 036691 138 EI 139 (426)
Q Consensus 138 ~g 139 (426)
++
T Consensus 96 ~~ 97 (100)
T 1yqb_A 96 HR 97 (100)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 110
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.65 E-value=7e-16 Score=123.66 Aligned_cols=73 Identities=23% Similarity=0.179 Sum_probs=68.9
Q ss_pred CcEEEEEecCC--cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCC-CCCCEEEEEee
Q 036691 285 PFQIFVKTWGG--KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI-QKHSTLHMVLA 357 (426)
Q Consensus 285 ~m~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I-~~~~ti~l~~~ 357 (426)
.|+++|++..+ .+++++|+|++||++||++|++++|+|+++|||+|+|+.++|++||.+||| ++|+++||++.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 48899999875 799999999999999999999999999999999999999999999999999 69999999874
No 111
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.3e-16 Score=128.40 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=70.1
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++++..
T Consensus 2 m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVP-LDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQD-SKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEE-ECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCT-TSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCC-cCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999 99999999999999999999999999999999999999 9999999999999999988754
No 112
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=129.85 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=72.7
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHH------HhCCC--CCceEEEeCCeEeecccccccccccccCc-
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQV------KEGIQ--SDQFTLVYDGKLLKEDTATMTSMNIKSES- 128 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~------~~gip--~~~q~L~~~g~~L~d~~~tL~~y~I~~~s- 128 (426)
+...|.|+||+++|++++ ++|++++||.+||++|++ ++|+| +++|||+|+|+.|+| +.||++|+|+.++
T Consensus 14 ~~~~m~I~vktl~G~~~~-lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD-~~TL~~y~I~~~~~ 91 (125)
T 2gow_A 14 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG-NVTLGALKLPFGKT 91 (125)
T ss_dssp CTTCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEES-SCBTGGGCCCTTSE
T ss_pred CCCeEEEEEEeCCCCEEE-EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCC-CCcHHHcCCCCCCc
Confidence 346799999999999999 999999999999999999 78884 899999999999999 9999999999665
Q ss_pred -EEEEEeeccce
Q 036691 129 -IIHLVFCPKEI 139 (426)
Q Consensus 129 -~i~l~~~~~~g 139 (426)
++||++|++++
T Consensus 92 ~tlhlv~r~~~~ 103 (125)
T 2gow_A 92 TVMHLVARETLP 103 (125)
T ss_dssp EEEEEEECSCCS
T ss_pred eEEEEEecCCCC
Confidence 78999998754
No 113
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=5.5e-16 Score=126.23 Aligned_cols=79 Identities=24% Similarity=0.332 Sum_probs=74.9
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
..|+|+|++.+|+ +.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||+.++++|..
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAM 94 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCC
Confidence 4699999999886 799999999999999999999999999999999999999999999999999999999999998854
No 114
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=3e-16 Score=125.46 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=75.0
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+..|+|+||+. |+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++.++++
T Consensus 15 ~~~m~i~Vk~~-g~~~~-~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHE-FFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRD-QDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp SCEEEEEEECS-SSEEE-EEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCT-TSCHHHHTCCTTEEEECCBCCSS
T ss_pred CCcEEEEEEEC-CeEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCC-cCCHHHCCCCCCCEEEEEEeCCC
Confidence 46799999998 99999 99999999999999999999999999999999999999 99999999999999999999887
Q ss_pred ee
Q 036691 139 IL 140 (426)
Q Consensus 139 g~ 140 (426)
|.
T Consensus 92 g~ 93 (96)
T 1wx8_A 92 GP 93 (96)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 115
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.63 E-value=1.4e-15 Score=116.25 Aligned_cols=72 Identities=29% Similarity=0.448 Sum_probs=68.9
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
.|+|+|++ +|+++. +++++++||.+||++|++..|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+..+
T Consensus 4 ~m~i~vk~-~g~~~~-~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD-DQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEEE-TTEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCC-CCCHHHcCCCCCCEEEEEEc
Confidence 48999999 999999 99999999999999999999999999999999999999 89999999999999999765
No 116
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-16 Score=124.89 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=66.1
Q ss_pred CCCcEEEEEecCCc--EEEEEEcCCCcHHHHHHHHHhH-hCCC-CcceEEEEcCeecCCCCccccC--CCCCCCEEEEE
Q 036691 283 PSPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDK-LQTP-LHLQSIVFAGKRLFENHVLARY--NIQKHSTLHMV 355 (426)
Q Consensus 283 ~~~m~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~-~gip-~~~q~L~~~gk~L~d~~tL~~y--~I~~~~ti~l~ 355 (426)
+..|+|+|++++|+ ++++++++++||++||++|+++ .|+| +++|||+|+||.|+|+.||++| +|++++||||+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 45799999999998 6799999999999999999996 5666 5999999999999999999999 99999999985
No 117
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=7.8e-16 Score=125.29 Aligned_cols=78 Identities=14% Similarity=0.299 Sum_probs=73.9
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
...|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|||+.+.+.
T Consensus 21 ~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTD-KMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp CCSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCT-TSHHHHCCCSSSCEEEEECCCSS
T ss_pred CCeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEeCCC
Confidence 46799999999999999 99999999999999999999999999999999999999 99999999999999999887654
No 118
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=122.24 Aligned_cols=80 Identities=26% Similarity=0.398 Sum_probs=73.1
Q ss_pred EecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 56 HQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 56 ~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
++.+..|+|+||+. |+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++.+
T Consensus 20 ~~~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 20 QGHPKIMKVTVKTP-KEKEE-FAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKD-QDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp ---CCCEEEEEECS-SCEEE-EEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECT-TCCTGGGTCCTTCEEEEEEC
T ss_pred CCCCCeEEEEEEeC-CcEEE-EEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCC-cCcHHHcCCCCCCEEEEEEc
Confidence 44568899999998 89999 99999999999999999999999999999999999999 99999999999999999888
Q ss_pred ccc
Q 036691 136 PKE 138 (426)
Q Consensus 136 ~~~ 138 (426)
+++
T Consensus 97 ~~~ 99 (101)
T 2klc_A 97 TQN 99 (101)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 119
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=8e-16 Score=124.32 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=73.2
Q ss_pred CceeEEEEcCCC----ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 60 SEMKLFVKIPTN----QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 60 ~~m~i~Vk~~~g----~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
..|+|+|++..| +++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+..+|++|+|+++++||++.+
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~-i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CeEEEEEEECCCCcCceEEE-EEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 469999999754 7898 99999999999999999999999999999999999998347999999999999999999
Q ss_pred cccee
Q 036691 136 PKEIL 140 (426)
Q Consensus 136 ~~~g~ 140 (426)
.++|-
T Consensus 85 ~~gg~ 89 (102)
T 1v5o_A 85 DNVGL 89 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88763
No 120
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=2.1e-15 Score=126.18 Aligned_cols=79 Identities=27% Similarity=0.358 Sum_probs=71.4
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
...|+|+||+. |+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+|+.+.++
T Consensus 30 ~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEE-FAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKD-QDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp CCCEEEEEECS-SCEEE-EEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEEST-TSCGGGTTCSSSEEEEEEEC---
T ss_pred CCcEEEEEEeC-CeEEE-EEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEeccCC
Confidence 36799999998 99999 99999999999999999999999999999999999998 99999999999999999999887
Q ss_pred ee
Q 036691 139 IL 140 (426)
Q Consensus 139 g~ 140 (426)
|.
T Consensus 107 g~ 108 (125)
T 1j8c_A 107 NS 108 (125)
T ss_dssp --
T ss_pred CC
Confidence 64
No 121
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.61 E-value=1.5e-15 Score=125.55 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=71.9
Q ss_pred CceeEEEEcC----------CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcE
Q 036691 60 SEMKLFVKIP----------TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESI 129 (426)
Q Consensus 60 ~~m~i~Vk~~----------~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~ 129 (426)
+.++|.|+.+ +|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D-~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLV-FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKD-SNSLAYYNMASGAV 101 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEE-EEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECT-TSBHHHHTCCSSCE
T ss_pred CCEEEEEEcCCCccccccccCCeEEE-EEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCC-CCCHHHCCCCCCCE
Confidence 4555666554 578999 99999999999999999999999999999999999999 99999999999999
Q ss_pred EEEEeecccee
Q 036691 130 IHLVFCPKEIL 140 (426)
Q Consensus 130 i~l~~~~~~g~ 140 (426)
|||+++++||.
T Consensus 102 i~lv~rl~GGk 112 (115)
T 1we7_A 102 IHLALKERSGP 112 (115)
T ss_dssp EEEEECCCSCC
T ss_pred EEEEEEcCCCC
Confidence 99999999874
No 122
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.61 E-value=4.8e-17 Score=137.05 Aligned_cols=77 Identities=40% Similarity=0.585 Sum_probs=0.4
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL 140 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~ 140 (426)
|+|+|++.+|+++. ++|++++||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++++++||.
T Consensus 1 M~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCC-CCchhhhccCCCCEEEEEEEcCCCC
Confidence 78999999999999 99999999999999999999999999999999999999 9999999999999999999999874
No 123
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=122.41 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=65.7
Q ss_pred cCCceeEEEEcCCCc--eeEEEEEcCCCcHHHHHHHHHHH-hCCC-CCceEEEeCCeEeeccccccccc--ccccCcEEE
Q 036691 58 NLSEMKLFVKIPTNQ--TATVVEAMPYHTVQNIKTMIQVK-EGIQ-SDQFTLVYDGKLLKEDTATMTSM--NIKSESIIH 131 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~--~~~~~~v~~~~tV~~lK~~I~~~-~gip-~~~q~L~~~g~~L~d~~~tL~~y--~I~~~s~i~ 131 (426)
.++.|+|+||+++|+ +++ ++|++++||.+||++|+++ +|.| +++|||+|+|+.|+| +.+|++| +|+++++||
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~-l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D-~~tL~~y~~~I~~~~tih 97 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQT-ISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPD-HLQLKDILRKQDEYHMVH 97 (99)
T ss_dssp ---CEEEEEECTTSSSCCEE-EEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECT-TSBTHHHHTTTCSEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEE-EEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCC-CCCHHHHhcCCCCCCEEE
Confidence 346899999999998 678 9999999999999999996 5666 599999999999999 9999999 999999999
Q ss_pred EE
Q 036691 132 LV 133 (426)
Q Consensus 132 l~ 133 (426)
|+
T Consensus 98 Lv 99 (99)
T 2kdb_A 98 LV 99 (99)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 124
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2.6e-15 Score=122.25 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=73.6
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+..|+|+||+.+|+ +. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|||+.++++
T Consensus 15 ~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKD-PDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp SSEEEEEEECSSCE-EE-EEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCT-TSCHHHHTCCTTEEEEEEECCCC
T ss_pred CceEEEEEEeCCCc-EE-EEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC-cCcHHHcCCCCCCEEEEEEcCCC
Confidence 46799999998886 67 99999999999999999999999999999999999999 99999999999999999999887
Q ss_pred e
Q 036691 139 I 139 (426)
Q Consensus 139 g 139 (426)
+
T Consensus 92 ~ 92 (106)
T 1wx7_A 92 R 92 (106)
T ss_dssp C
T ss_pred C
Confidence 5
No 125
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=122.23 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=69.9
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE--cCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF--AGKRLFENHVLARYNIQKHSTLHMVLAPSS 360 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g 360 (426)
.+|.+++..++|+++++++++++||++||++|++++|||+++|+|+| +|+ |+|+.+|++|+|++|++|||+++-..
T Consensus 7 ~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 7 GRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred cceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 36889999999999999999999999999999999999999999986 566 99999999999999999999886443
No 126
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.60 E-value=7.1e-17 Score=139.27 Aligned_cols=78 Identities=40% Similarity=0.547 Sum_probs=0.0
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS 141 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~ 141 (426)
|+|+|++++|+++. ++|++++||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+|+++++||..
T Consensus 1 MqI~VK~l~G~~~~-l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~dygI~~gstL~Lvlrl~GGgK 78 (152)
T 3u5c_f 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGGK 78 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccc-cCcHHHcCCCCCCEEEEEeeccCCCc
Confidence 79999999999999 99999999999999999999999999999999999999 99999999999999999999998853
No 127
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.60 E-value=3.7e-15 Score=119.45 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=67.9
Q ss_pred ceeEEEEcCCC--ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccccc-ccCcEEEEEee
Q 036691 61 EMKLFVKIPTN--QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI-KSESIIHLVFC 135 (426)
Q Consensus 61 ~m~i~Vk~~~g--~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I-~~~s~i~l~~~ 135 (426)
.|+|+|+...+ .+++ ++|+|++||.+||++|++++|+||++|||+|+|+.++| ++||++||| ++|+++||++.
T Consensus 24 ~l~v~v~d~~s~~~~i~-l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D-~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIW-LTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARD-QETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECT-TCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEE-EEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccC-cCcHHHcCCCCCCCEEEEEEE
Confidence 68899999874 7888 99999999999999999999999999999999998888 999999999 59999999764
No 128
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=5.6e-15 Score=117.74 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=71.2
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC-CccccCCCCCCCEEEEEeecCCCc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~-~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
..|+|+|++++|+++.++|++++||++||++|+.++ +++|+|+|+|+.|+|+ .+|++|||++|++|||+.+..+..
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~~ 82 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGAA 82 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCCC
Confidence 469999999999999999999999999999999988 8999999999999999 999999999999999999876553
No 129
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=6.6e-15 Score=114.80 Aligned_cols=71 Identities=28% Similarity=0.404 Sum_probs=66.7
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
.+++++++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++..
T Consensus 13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 35677789999999999999999999999999999999999999999999999999999999999998753
No 130
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.57 E-value=1.7e-16 Score=140.50 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=1.2
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
|+|+|++++|++++++|++++||++||++|++++|||+++|+|+|+|++|+|+.||+ +++||||++|++||..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 889999999999999999999999999999999999999999999999999999999 9999999999999965
No 131
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.57 E-value=4.2e-15 Score=117.24 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=69.2
Q ss_pred CCcEEEEEecCCcEEEE-EEcCCCcHHHHHHHHHhHhCCCCcceEEE---EcCeecCCCCccccCCCCCCCEEEEEee
Q 036691 284 SPFQIFVKTWGGKTITL-DVQPYNTVQDVKVKLFDKLQTPLHLQSIV---FAGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
..|+|+|+. .|+++++ ++++++||++||++|++++|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+..
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 468999996 8999999 99999999999999999999999999999 9999999999999999999999999754
No 132
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=4.4e-15 Score=118.46 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=68.0
Q ss_pred CCcEEEEEecCCcEE-EEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691 284 SPFQIFVKTWGGKTI-TLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
..|+|+|+. .|+++ .+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+...
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 458999995 78999 6999999999999999999999999999999999999999 9999999999999997643
No 133
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=1.3e-14 Score=118.19 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCcEEEEEecCC---cEEEEEE--------cC-CCcHHHHHHHHHhHh--CCCCcc-eEEEEcCeecCCCCccccCCCCC
Q 036691 284 SPFQIFVKTWGG---KTITLDV--------QP-YNTVQDVKVKLFDKL--QTPLHL-QSIVFAGKRLFENHVLARYNIQK 348 (426)
Q Consensus 284 ~~m~i~v~~~~g---~~~~l~v--------~~-~~tV~~lK~~i~~~~--gip~~~-q~L~~~gk~L~d~~tL~~y~I~~ 348 (426)
..|+|+|++.++ +++++++ ++ ++||++||++|+.++ |+|+++ |+|+|+|+.|+|++||++|+|++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 468999999998 8999995 44 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEeecC
Q 036691 349 HSTLHMVLAPS 359 (426)
Q Consensus 349 ~~ti~l~~~~~ 359 (426)
|++|||+.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999998764
No 134
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=116.30 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCcEEEEE-ecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691 284 SPFQIFVK-TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS 360 (426)
Q Consensus 284 ~~m~i~v~-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g 360 (426)
..+.|.|+ ...|..++++++++.||.+||+.++.+.++|+++|+|+|+||.|+|+.||.+|||++|.||||+.+-..
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 35677777 667889999999999999999999999999999999999999999999999999999999999987543
No 135
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.53 E-value=1.3e-14 Score=114.47 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=70.0
Q ss_pred CCceeEEEEcCCCceeEEE-EEcCCCcHHHHHHHHHHHhCCCCCceEEE---eCCeEeecccccccccccccCcEEEEEe
Q 036691 59 LSEMKLFVKIPTNQTATVV-EAMPYHTVQNIKTMIQVKEGIQSDQFTLV---YDGKLLKEDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~-~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~d~~~tL~~y~I~~~s~i~l~~ 134 (426)
...|+|+||+ .|+++. + ++++++||.+||++|++++|+|+++|+|+ |+|+.|+| +.+|++|+|+++++|+|+.
T Consensus 5 ~~~m~i~Vk~-~g~~~~-i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D-~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYS-VTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN-DVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CCSCCEEEEE-TTEEEE-ECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT-TSBHHHHTCCTTEEEEEEC
T ss_pred CceEEEEEEE-CCEEEE-EEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC-CCCHHHcCCCCCCEEEEEe
Confidence 3579999997 899999 9 99999999999999999999999999999 99999999 9999999999999999965
Q ss_pred ec
Q 036691 135 CP 136 (426)
Q Consensus 135 ~~ 136 (426)
..
T Consensus 82 ~~ 83 (90)
T 1v5t_A 82 TR 83 (90)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 136
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.52 E-value=3.6e-14 Score=112.63 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=64.5
Q ss_pred CCcEEEEEecCC--cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc--Ce---ec-CCCCccccCCCCCCCEEEEE
Q 036691 284 SPFQIFVKTWGG--KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA--GK---RL-FENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 284 ~~m~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--gk---~L-~d~~tL~~y~I~~~~ti~l~ 355 (426)
..+.|+|+...+ +++++++++++||++||++|+.++|+|+++|||+|+ |+ .| +|++||++|||++|++|||+
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 456788887665 489999999999999999999999999999999998 45 45 89999999999999999986
No 137
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=116.00 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=68.2
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe--CCeEeecccccccccccccCcEEEEEeec
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY--DGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
.+|.++++..+|++++ ++|++++||++||++|++++||||++|+|+| +|+ |+| +.+|++|+|++|+++||+++.
T Consensus 7 ~~m~~~~vk~~Gk~~~-v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D-~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 7 GRMLDFRVEYRDRNVD-VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VED-STVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCEEEEEEECSSCEEE-EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCT-TSBHHHHCCCSEEEEEECCSS
T ss_pred cceEEEEEEeCCeEEE-EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCC-cCCHHHcCCCCCCEEEEEecC
Confidence 3688888888999999 9999999999999999999999999999997 666 888 999999999999999998764
No 138
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=4e-14 Score=112.10 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=68.8
Q ss_pred CCcEEEEEecCCcEEEEEEcCC-----CcHHHHHHHHHhHhCCCCcceEEEEcCeecCC-CCccccCCCCCCCEEEEEee
Q 036691 284 SPFQIFVKTWGGKTITLDVQPY-----NTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFE-NHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~-----~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d-~~tL~~y~I~~~~ti~l~~~ 357 (426)
..|.|+|++ .|++++++++++ .||++||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|||+.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 468999998 589999999995 99999999999999999999999999999998 66899999999999999875
Q ss_pred cC
Q 036691 358 PS 359 (426)
Q Consensus 358 ~~ 359 (426)
..
T Consensus 85 ~~ 86 (92)
T 1wxv_A 85 KN 86 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 139
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.52 E-value=8.9e-16 Score=135.86 Aligned_cols=73 Identities=22% Similarity=0.183 Sum_probs=1.0
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS 141 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~ 141 (426)
|+|+|++++|++++ ++|++++||.+||++|++++|+|+++|+|+|+|++|+| +.+|+ ++|||||++|++||..
T Consensus 1 MqI~VKtL~Gktit-LeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD-~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKI-YTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPN-TELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEE-EEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCC-CCccc-----CCCEEEEEEecCCCcc
Confidence 89999999999999 99999999999999999999999999999999999999 99998 8999999999999854
No 140
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=4e-14 Score=112.12 Aligned_cols=80 Identities=9% Similarity=0.201 Sum_probs=77.0
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
..|+|.|++.+|+.+.++|.++++++.|+++++++.|+|++++||+|+|++|.++.|+++|++++|++|+++++++||..
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~ 85 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP 85 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999954
No 141
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=2.7e-14 Score=113.76 Aligned_cols=75 Identities=27% Similarity=0.417 Sum_probs=70.0
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccc-ccccccccccCcEEEEEeecc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDT-ATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~-~tL~~y~I~~~s~i~l~~~~~ 137 (426)
...|+|+||+.+|+.+. ++|++++||.+||++|++++ +++|+|+|+|+.|+| + .+|++|+|++|++||++.+.+
T Consensus 5 ~~~m~i~Vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D-~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 5 SSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQD-PARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCC-SSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccC-CcCCHHHcCCCCCCEEEEEECCC
Confidence 35799999999999999 99999999999999999987 899999999999999 7 999999999999999988765
Q ss_pred c
Q 036691 138 E 138 (426)
Q Consensus 138 ~ 138 (426)
.
T Consensus 80 ~ 80 (95)
T 1wia_A 80 G 80 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.51 E-value=4.2e-14 Score=134.94 Aligned_cols=78 Identities=50% Similarity=0.741 Sum_probs=73.1
Q ss_pred CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
.+..|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||++|+|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999875
No 143
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=1.8e-14 Score=114.88 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=68.2
Q ss_pred CceeEEEEcCCCcee-EEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 60 SEMKLFVKIPTNQTA-TVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~-~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
..|+|+||+ .|+++ . +++++++||.+||++|++++|+|+++|+|+|.|+.|+| + +|++|+|+++++|+|+...
T Consensus 6 ~~m~i~Vk~-~g~~~~~-l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D-~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEG-VELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKD-D-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp CEEEEEEEE-TTEEEEE-EEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCS-S-CCCSCCCCSSCEEECCCCC
T ss_pred cEEEEEEEE-CCEEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCC-C-CHHHCCCCCCCEEEEEecc
Confidence 578999997 78999 7 99999999999999999999999999999999999999 7 9999999999999996653
No 144
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=113.56 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=64.8
Q ss_pred CcEEEEEecCCcEE--EE-EEcCCCcHHHHHHHHHhH-hCCCCcceEEEEc--CeecCCCCccccCCCCCCCEEEE
Q 036691 285 PFQIFVKTWGGKTI--TL-DVQPYNTVQDVKVKLFDK-LQTPLHLQSIVFA--GKRLFENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 285 ~m~i~v~~~~g~~~--~l-~v~~~~tV~~lK~~i~~~-~gip~~~q~L~~~--gk~L~d~~tL~~y~I~~~~ti~l 354 (426)
.|+|+|+++.|+.+ ++ +|+|++||++||++|+++ .|+|+++|||+|. |+.|+|+.||++|||+++++||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 49999999998775 58 999999999999999994 8999999999987 99999999999999999999876
No 145
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=5.1e-14 Score=111.44 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=69.3
Q ss_pred CCceeEEEEcCCCceeEEEEEcCC-----CcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPY-----HTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~-----~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
...|+|+|++ .|+.+. ++++++ .||.+||++|++++|+|+++|+|+|+|+.|.|++.+|++|+|+++++|||+
T Consensus 5 ~~~~~v~Vk~-~~~~~~-i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp CSSEEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CCeEEEEEEE-CCEEEE-EEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 3579999999 588998 999995 999999999999999999999999999999985668999999999999997
Q ss_pred eec
Q 036691 134 FCP 136 (426)
Q Consensus 134 ~~~ 136 (426)
.+.
T Consensus 83 ~~~ 85 (92)
T 1wxv_A 83 GKK 85 (92)
T ss_dssp SCC
T ss_pred ecC
Confidence 654
No 146
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.51 E-value=3e-14 Score=110.96 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=60.1
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE-------cCeecCCCCccccCCCCCCCEEEEEee
Q 036691 293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF-------AGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
...+.+...+++++||++||++|+.++|+|+++|||+| .|+.|+|++||++|||++|++|||+-+
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 45577889999999999999999999999999999996 689999999999999999999999853
No 147
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=4.5e-14 Score=110.04 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=64.5
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
+++++.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++..
T Consensus 14 ~~~~~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIP-LSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVE-TSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEE-EEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCT-TCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCC-cCCHHHCCCCCCCEEEEEEe
Confidence 345556899999 99999999999999999999999999999999999999 99999999999999998653
No 148
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=3.2e-14 Score=115.84 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCceeEEEEcCCC---ceeEEEEEc--------C-CCcHHHHHHHHHHHh--CCCCCc-eEEEeCCeEeecccccccccc
Q 036691 59 LSEMKLFVKIPTN---QTATVVEAM--------P-YHTVQNIKTMIQVKE--GIQSDQ-FTLVYDGKLLKEDTATMTSMN 123 (426)
Q Consensus 59 ~~~m~i~Vk~~~g---~~~~~~~v~--------~-~~tV~~lK~~I~~~~--gip~~~-q~L~~~g~~L~d~~~tL~~y~ 123 (426)
...|+|+||+.+| +++. ++++ + ++||.+||++|++++ |+|+++ |+|+|+|+.|+| +.+|++|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~-l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D-~~tL~~y~ 87 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSI-LQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKD-DQTLDFYG 87 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEE-ECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCT-TCBHHHHT
T ss_pred CCceEEEEEeCCCCCccEEE-EEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCC-CCcHHHcC
Confidence 3579999999988 8888 8954 4 499999999999999 999999 999999999999 99999999
Q ss_pred cccCcEEEEEeecc
Q 036691 124 IKSESIIHLVFCPK 137 (426)
Q Consensus 124 I~~~s~i~l~~~~~ 137 (426)
|+++++|||+.+..
T Consensus 88 i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 88 IQPGSTVHVLRKSW 101 (107)
T ss_dssp CCTTCEEEEEESSC
T ss_pred CCCCCEEEEEeCCC
Confidence 99999999988754
No 149
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=113.56 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=71.0
Q ss_pred CceeEEEE-cCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 60 SEMKLFVK-IPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 60 ~~m~i~Vk-~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
..+.|.|+ .+.|+.+. ++++++.||.+||+.++.+.++|+++|+|+|+|+.|.| +.||++|||++|.||||+.+-.+
T Consensus 14 ~~itvkv~l~~~~~k~t-v~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD-~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIV-IPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKN-NETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp SCEEEEEEETTTCCEEE-EEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECS-SCCHHHHSCCSSCEEEEEEEESC
T ss_pred ccEEEEEEEcCCCcEEE-EEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCC-cchHHHcCCCCCCEEEEEEecCC
Confidence 45677777 66788899 99999999999999999999999999999999999999 99999999999999999888654
Q ss_pred e
Q 036691 139 I 139 (426)
Q Consensus 139 g 139 (426)
.
T Consensus 92 p 92 (118)
T 2daf_A 92 P 92 (118)
T ss_dssp T
T ss_pred C
Confidence 3
No 150
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=2.2e-14 Score=114.23 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=66.8
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
..|+|+|+ +.|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+ +.+|++|+|+++++|||+...
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence 45889998 57899999999999999999999999999999999999999994 459999999999999997543
No 151
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.9e-14 Score=111.69 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=64.6
Q ss_pred ceeEEEEcCCCcee--EEE-EEcCCCcHHHHHHHHHHH-hCCCCCceEEEeC--CeEeecccccccccccccCcEEEE
Q 036691 61 EMKLFVKIPTNQTA--TVV-EAMPYHTVQNIKTMIQVK-EGIQSDQFTLVYD--GKLLKEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~--~~~-~v~~~~tV~~lK~~I~~~-~gip~~~q~L~~~--g~~L~d~~~tL~~y~I~~~s~i~l 132 (426)
.|+|+|+++.|+.+ . + +|+|++||.+||++|+++ +|+||++|||+|. |+.|+| +.+|++|+|+++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~-l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D-~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCF-LDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKD-EDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEE-EEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCT-TCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeE-EeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCC-CCCHHHcCCCCCCEEEE
Confidence 59999999988775 4 7 999999999999999994 8999999999987 999999 99999999999999886
No 152
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.48 E-value=9.9e-14 Score=110.09 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=65.1
Q ss_pred cCCceeEEEEcCCC--ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC--Ce---Ee-ecccccccccccccCcE
Q 036691 58 NLSEMKLFVKIPTN--QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD--GK---LL-KEDTATMTSMNIKSESI 129 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g--~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~---~L-~d~~~tL~~y~I~~~s~ 129 (426)
.++.+.|+|+...+ +.++ +++++++||++||++|++++|+|+++|||+|+ |+ .| +| +++|++|+|++|++
T Consensus 12 ~~~~v~l~It~s~~~~~~~~-~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D-~~tL~~Y~i~~gst 89 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFE-VKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNN-DAQLGYYANSDGLR 89 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEE-EEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCT-TSBHHHHCCSSSCE
T ss_pred CCCeEEEEEEECCCCceEEE-EEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCC-CCCHhHCCcCCCCE
Confidence 35677888887665 4788 99999999999999999999999999999998 55 55 66 99999999999999
Q ss_pred EEEE
Q 036691 130 IHLV 133 (426)
Q Consensus 130 i~l~ 133 (426)
||++
T Consensus 90 ihlv 93 (95)
T 2kjr_A 90 LHVV 93 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 153
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.46 E-value=1.3e-13 Score=109.64 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=63.1
Q ss_pred CcEEEEEecCC--cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe---e----cCCCCccccCCCCCCCEEEEE
Q 036691 285 PFQIFVKTWGG--KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK---R----LFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 285 ~m~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk---~----L~d~~tL~~y~I~~~~ti~l~ 355 (426)
.+.++|...+. ..+++++++++||++||++|+.++|+|+++|||+|.|+ . ++|+++|++|+|++|++|||+
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 45677776544 57999999999999999999999999999999999884 3 489999999999999999986
Q ss_pred e
Q 036691 356 L 356 (426)
Q Consensus 356 ~ 356 (426)
=
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 3
No 154
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.46 E-value=1.2e-13 Score=131.66 Aligned_cols=78 Identities=41% Similarity=0.603 Sum_probs=72.7
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.++.|+|+||+++|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|||++|++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~-leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D-~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCC-CCCHHHcCCCCCCEEEEEEeCC
Confidence 468999999999999999 99999999999999999999999999999999999999 9999999999999999998864
No 155
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.45 E-value=9.7e-14 Score=136.17 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=74.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHh---HhCCCCcceEEEEcCeecCCCCccccCCCCCCCEE-EEEeecC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFD---KLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTL-HMVLAPS 359 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~---~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti-~l~~~~~ 359 (426)
..|+|+||+.+|++++++|++++||.+||++|+. ++|+|+++|+|+|+||.|+|++||++|||+++++| ||+.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4699999999999999999999999999999999 67899999999999999999999999999999999 8888888
Q ss_pred CCc
Q 036691 360 SRI 362 (426)
Q Consensus 360 gg~ 362 (426)
++.
T Consensus 86 ~~~ 88 (368)
T 1oqy_A 86 AGQ 88 (368)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 156
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=4.5e-13 Score=105.30 Aligned_cols=81 Identities=9% Similarity=0.203 Sum_probs=76.9
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
+..|+|.|++.+|+.+.+.|.++++++.|++..+++.|+|+.++||+|+|+.|.++.|.++|++++|++|+++++.+||.
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred c
Q 036691 363 I 363 (426)
Q Consensus 363 ~ 363 (426)
.
T Consensus 83 ~ 83 (91)
T 2io0_B 83 Y 83 (91)
T ss_dssp C
T ss_pred c
Confidence 3
No 157
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=8.6e-14 Score=110.76 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
...|+|+||. .|+++. +++++++||.+||++|++++|+|+++|+|+|.|+.| | +.+|++|+|+++++|||+..
T Consensus 15 ~~~~~i~Vk~-~g~~~~-i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-d-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-E-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-S-SSBHHHHCCCTTEEEEECCS
T ss_pred CceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-C-cCcHHHCCCCCCCEEEEEec
Confidence 3578999995 789999 999999999999999999999999999999999999 5 44999999999999999654
No 158
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.42 E-value=2.1e-13 Score=106.23 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=58.2
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe-------CCeEeecccccccccccccCcEEEEEee
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY-------DGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-------~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
.++.+. ..+++++||.+||++|+.++|+||++|||+| .|+.|+| +++|++|+|++|++|||+-+
T Consensus 13 ~~~~~E-~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 13 RMRVPE-KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAN-DKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp SCCEEE-EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCeEEE-EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCC-CCCHHHCCCCCCCEEEEEeC
Confidence 455566 9999999999999999999999999999996 5888999 99999999999999999654
No 159
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.42 E-value=4e-13 Score=106.85 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=62.5
Q ss_pred CceeEEEEcCCC--ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe---E---e-ecccccccccccccCcEE
Q 036691 60 SEMKLFVKIPTN--QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK---L---L-KEDTATMTSMNIKSESII 130 (426)
Q Consensus 60 ~~m~i~Vk~~~g--~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~---~---L-~d~~~tL~~y~I~~~s~i 130 (426)
+.+.++|+.... +.++ +++++++||++||++|++++|+||++|||+|.|+ . | +| +++|++|+|++|++|
T Consensus 13 ~~v~l~It~s~~~~~~~e-~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D-~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSAD-ARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDD-SRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCEEEEEEETTSSCCCEE-EEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGG-GSCHHHHCCCSCCEE
T ss_pred ceEEEEEEECCCCceEEE-EEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCC-cCCHHHCCCCCCCEE
Confidence 456667776443 4788 9999999999999999999999999999999883 3 4 66 999999999999999
Q ss_pred EEEe
Q 036691 131 HLVF 134 (426)
Q Consensus 131 ~l~~ 134 (426)
|++-
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9853
No 160
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=6.6e-13 Score=105.10 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=76.1
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+..|+|+|++.+|+.+. +.|.+++++..|+++++++.|+|++++||+|.|+.|.+ +.|+++|+++++++|+++++.+|
T Consensus 5 ~~~i~ikVk~~~g~~i~-~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~-~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp -CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTTTCCTTCEEEEEECCEE
T ss_pred CCeEEEEEECCCCCEEE-EEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEeccC
Confidence 45799999999999999 99999999999999999999999999999999999999 99999999999999999999998
Q ss_pred ee
Q 036691 139 IL 140 (426)
Q Consensus 139 g~ 140 (426)
|.
T Consensus 83 G~ 84 (94)
T 2io1_B 83 GV 84 (94)
T ss_dssp SC
T ss_pred CC
Confidence 84
No 161
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.40 E-value=1.1e-12 Score=103.62 Aligned_cols=78 Identities=9% Similarity=0.204 Sum_probs=72.9
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..|.|.|++.+|+.+.+.|.+++++..|+...+++.|+|++++||+|+|+.|.++.|..+|++++|++|+++++++||
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999987
No 162
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.39 E-value=3.5e-13 Score=109.61 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=66.8
Q ss_pred CcEEEEEecCCcEEEEEEc-CCCcHHHHHHHHHhHhCCCCcceEEEEcCe-----------e----cCCCCccccCCCCC
Q 036691 285 PFQIFVKTWGGKTITLDVQ-PYNTVQDVKVKLFDKLQTPLHLQSIVFAGK-----------R----LFENHVLARYNIQK 348 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~gk-----------~----L~d~~tL~~y~I~~ 348 (426)
.|.|+|++.+|+. .++|+ +++||.+||++|++++|+|+++|+|+|.|+ . ++|++||++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4999999999866 79999 999999999999999999999999999988 4 58999999999999
Q ss_pred CCEEEEEee
Q 036691 349 HSTLHMVLA 357 (426)
Q Consensus 349 ~~ti~l~~~ 357 (426)
|++|||+..
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999999765
No 163
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.39 E-value=3.2e-13 Score=132.50 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=73.5
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHH---HhCCCCCceEEEeCCeEeecccccccccccccCcEE-EEEee
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQV---KEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESII-HLVFC 135 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~---~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i-~l~~~ 135 (426)
..|+|+||+.+|+++. ++|++++||.+||++|++ ++|+|+++|||+|+|+.|+| +++|++|+|+++++| +|+.|
T Consensus 6 ~~M~I~VKtl~Gk~~~-leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D-~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD-DVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECS-SSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEE-EEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCC-cCCHHHcCCCCCCEEEEEEec
Confidence 5799999999999999 999999999999999999 67899999999999999999 999999999999999 88888
Q ss_pred cccee
Q 036691 136 PKEIL 140 (426)
Q Consensus 136 ~~~g~ 140 (426)
.+++.
T Consensus 84 ~~~~~ 88 (368)
T 1oqy_A 84 TKAGQ 88 (368)
T ss_dssp CCSSS
T ss_pred CCCCC
Confidence 77653
No 164
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=9.6e-13 Score=104.68 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=62.6
Q ss_pred cEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC---ee----cCCCCccccCCCCCCCEEEEEe
Q 036691 286 FQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG---KR----LFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 286 m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g---k~----L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
+.|+|+..... .+++++++++||++||++|+.++|+|+++|||+|+| +. ++|+++|++|||++|++||++-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 56778775442 689999999999999999999999999999999987 43 5899999999999999999863
No 165
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.7e-12 Score=104.46 Aligned_cols=79 Identities=10% Similarity=0.199 Sum_probs=76.5
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
..|+|.|++.+|+.+.+.|.+++++..|+...+++.|+|+.++||+|+|+.|.++.|..+|++++|++|+++++++||.
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999985
No 166
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.34 E-value=3.3e-12 Score=102.81 Aligned_cols=77 Identities=6% Similarity=0.179 Sum_probs=72.0
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..|+|.|++ +|+.+.+.|.+++++..|+...+++.|+++.++||+|+|+.|.++.|..+|++++|++|+++++++||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 458999999 99999999999999999999999999999999999999999999999999999999999999999987
No 167
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.34 E-value=7.8e-13 Score=107.57 Aligned_cols=73 Identities=25% Similarity=0.250 Sum_probs=66.2
Q ss_pred CceeEEEEcCCCceeEEEEEc-CCCcHHHHHHHHHHHhCCCCCceEEEeCCe-----------E----eecccccccccc
Q 036691 60 SEMKLFVKIPTNQTATVVEAM-PYHTVQNIKTMIQVKEGIQSDQFTLVYDGK-----------L----LKEDTATMTSMN 123 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-----------~----L~d~~~tL~~y~ 123 (426)
..|.|+||+.+|+. . ++|+ +++||.+||++|++++|+|+++|+|+|.|+ . ++| +.+|++|+
T Consensus 6 ~~M~irvrs~~G~~-~-v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d-~~tL~~~g 82 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-R-VSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADP-NLRISSLN 82 (107)
T ss_dssp CCEEEEEECSSCEE-E-EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCT-TCBGGGTC
T ss_pred CeEEEEEECCCCCE-E-EEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCC-CCCHHHCC
Confidence 35999999999976 6 8999 999999999999999999999999999988 4 466 99999999
Q ss_pred cccCcEEEEEee
Q 036691 124 IKSESIIHLVFC 135 (426)
Q Consensus 124 I~~~s~i~l~~~ 135 (426)
|++|++|||...
T Consensus 83 i~~G~~L~l~~~ 94 (107)
T 1wf9_A 83 LAHGSMVYLAYE 94 (107)
T ss_dssp CCTTCEEECCCS
T ss_pred CCCCCEEEEEeC
Confidence 999999998654
No 168
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.32 E-value=4.9e-12 Score=105.31 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=63.7
Q ss_pred CcEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC---e---e-cCCCCccccCCCCCCCEEEEEe
Q 036691 285 PFQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG---K---R-LFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 285 ~m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g---k---~-L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
.+.|+|+...+. .+++++++++||++||++|+.++|+|+++|||+|.| + . ++|+++|++|||++|++||++.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 467888875543 689999999999999999999999999999999987 4 3 4899999999999999999985
No 169
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.32 E-value=7.1e-12 Score=94.23 Aligned_cols=70 Identities=10% Similarity=0.236 Sum_probs=68.3
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~ 355 (426)
|+|.|++.+|+.+.+.+.++++++.|++..+++.|+|+.+++|+|+|+.|.++.|.++|++++|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 170
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=7.9e-12 Score=98.16 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=76.3
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+..|+|.|++.+|+.+. +.|.+++++..|+...+++.|+|+++++|+|.|+.|.+ +.|.++|++.+|++|+++++.+|
T Consensus 3 ~~~i~ikVk~~~g~~v~-~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~-~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp -CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCT-TCCTTTTTCCTTEEEEEEECCCC
T ss_pred CCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEeccC
Confidence 45789999999999999 99999999999999999999999999999999999999 99999999999999999999988
Q ss_pred eee
Q 036691 139 ILS 141 (426)
Q Consensus 139 g~~ 141 (426)
|..
T Consensus 81 g~~ 83 (91)
T 2io0_B 81 GVY 83 (91)
T ss_dssp CCC
T ss_pred Ccc
Confidence 753
No 171
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.31 E-value=3.4e-12 Score=101.49 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=61.7
Q ss_pred ceeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC---eE---e-ecccccccccccccCcEEEE
Q 036691 61 EMKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG---KL---L-KEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 61 ~m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~~---L-~d~~~tL~~y~I~~~s~i~l 132 (426)
.+.|+|+..... .+. +++++++||.+||++|++++|+|+++|||+|.| +. | +| +++|++|+|++|++||+
T Consensus 7 ~v~l~I~~~~~~~~~~-~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D-~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE-DALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCS-SSBTTSSSCCTTCEEEE
T ss_pred EEEEEEEECCCCeeEE-EEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCC-cCCHhHCCCCCCCEEEE
Confidence 366777765442 677 999999999999999999999999999999987 43 4 66 99999999999999998
Q ss_pred Ee
Q 036691 133 VF 134 (426)
Q Consensus 133 ~~ 134 (426)
+-
T Consensus 85 ~d 86 (95)
T 1v6e_A 85 ID 86 (95)
T ss_dssp BC
T ss_pred EE
Confidence 53
No 172
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.31 E-value=3e-12 Score=103.83 Aligned_cols=80 Identities=8% Similarity=0.158 Sum_probs=76.3
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
+..|.|.|++.+|+.+.+.|.+++++..|+...+++.|+|++++||+|+|++|.++.|..+|++++|++|++++..+||-
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999984
No 173
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.28 E-value=4.2e-12 Score=99.04 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=63.6
Q ss_pred cEEEEEecCCcEEEEE-EcCCCcHHHHHHHHHhHhCCCCcceEEEEcC--eecC---CCCccccCCCCCCCEEEEEee
Q 036691 286 FQIFVKTWGGKTITLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG--KRLF---ENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g--k~L~---d~~tL~~y~I~~~~ti~l~~~ 357 (426)
|+|.|++.+|+. .+. +++++||++||+.|++++|+|+++|+|+|++ +.|+ |+.+|++|||.+|++||+.-.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 789999999965 477 9999999999999999999999999999974 8884 688999999999999988643
No 174
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.27 E-value=1.1e-11 Score=103.04 Aligned_cols=73 Identities=11% Similarity=0.153 Sum_probs=62.7
Q ss_pred CceeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC---e---Ee-ecccccccccccccCcEEE
Q 036691 60 SEMKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG---K---LL-KEDTATMTSMNIKSESIIH 131 (426)
Q Consensus 60 ~~m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~---~L-~d~~~tL~~y~I~~~s~i~ 131 (426)
+.+.|+|+...+. .+. +++++++||.+||++|+.++|+|+++|||+|.| + .| +| +++|++|+|++|++||
T Consensus 5 ~~v~l~V~~~~~~~~~e-~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D-~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 5 EVYDLEITTNATDFPME-KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDG-AKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CEEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCC-SSBTTTTTCCSSEEEE
T ss_pred CEEEEEEEECCCCccEE-EEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCC-cCCHHHCCCCCCCEEE
Confidence 3467778775443 677 999999999999999999999999999999987 4 34 56 9999999999999999
Q ss_pred EEe
Q 036691 132 LVF 134 (426)
Q Consensus 132 l~~ 134 (426)
++.
T Consensus 83 vvd 85 (122)
T 1t0y_A 83 AVD 85 (122)
T ss_dssp EEE
T ss_pred EEe
Confidence 965
No 175
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.27 E-value=1.9e-11 Score=96.52 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=73.1
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+..|.|.|++.+|+.+. +.|.+++++..|+...+++.|+|+++++|+|.|+.|.+ +.|.++|++.+|++|+++++.+|
T Consensus 15 ~~~i~ikV~~~~g~~i~-~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp CCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEECC--
T ss_pred CCeEEEEEECCCCCEEE-EEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCC-CCCHHHcCCCCCCEEEEEeeccC
Confidence 46789999999999998 99999999999999999999999999999999999999 99999999999999999999887
Q ss_pred e
Q 036691 139 I 139 (426)
Q Consensus 139 g 139 (426)
|
T Consensus 93 G 93 (93)
T 2d07_B 93 G 93 (93)
T ss_dssp -
T ss_pred C
Confidence 6
No 176
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.26 E-value=2.6e-11 Score=92.78 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=69.5
Q ss_pred CCCcEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691 283 PSPFQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 283 ~~~m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~ 355 (426)
+..|+|.|++.+|+ .+.+.|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|..+|++++|++|+++
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35689999999996 89999999999999999999999999999999999999999999999999999999985
No 177
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.26 E-value=6.4e-12 Score=121.51 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=67.7
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE---EcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV---FAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
..|.|.|+ ++|+++++++++++||++||++|++++|||+++|+|+ |+|+.|+|+.+|++|||++|++|+|+....
T Consensus 4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 35789999 4899999999999999999999999999999999999 899999999999999999999999986543
No 178
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=3e-11 Score=97.18 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=75.9
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
+..|.|.|++.+|+.+. +.|.+++++..|+...+++.|+|++++||+|.|+.|.+ +.|.++|++.++++|+++++.+|
T Consensus 22 ~~~I~IkVk~~~g~~i~-~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~-~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp SCCEEEEEECSSSCEEE-EEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCT-TSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEeccC
Confidence 46789999999999999 99999999999999999999999999999999999999 99999999999999999999888
Q ss_pred ee
Q 036691 139 IL 140 (426)
Q Consensus 139 g~ 140 (426)
|.
T Consensus 100 G~ 101 (104)
T 1wz0_A 100 GP 101 (104)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 179
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.20 E-value=5e-11 Score=95.93 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=72.7
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.+..|+|.|++ +|+.+. +.|.+++++..|+...+++.|++++++||+|.|+.|.+ +.|.++|++.+|++|+++++.+
T Consensus 28 ~~~~I~IkV~~-~g~~i~-fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~-~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCeEEEEEec-CCcEEE-EEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCC-CCCHHHcCCCCCCEEEEEeecc
Confidence 34679999999 999999 99999999999999999999999999999999999999 9999999999999999999988
Q ss_pred ce
Q 036691 138 EI 139 (426)
Q Consensus 138 ~g 139 (426)
||
T Consensus 105 GG 106 (106)
T 2eke_C 105 GG 106 (106)
T ss_dssp --
T ss_pred cC
Confidence 76
No 180
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.20 E-value=6.9e-11 Score=88.78 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=67.6
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
|+|.|++.+|+.+. +.|.+++++..|+...+++.|+|+++++++|.|+.|.+ +.|.++|++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~-~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCT-TCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHcCCCCCCEEEEE
Confidence 78999999999999 99999999999999999999999999999999999999 999999999999999984
No 181
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.19 E-value=1.4e-11 Score=95.99 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=63.1
Q ss_pred eeEEEEcCCCceeEEEE-EcCCCcHHHHHHHHHHHhCCCCCceEEEeC--CeEee--cccccccccccccCcEEEEEee
Q 036691 62 MKLFVKIPTNQTATVVE-AMPYHTVQNIKTMIQVKEGIQSDQFTLVYD--GKLLK--EDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~--d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
|+|+||+.+|+. . +. +++++||.+||++|++++|+|+++|+|+|+ ++.|+ |++.+|++|||++|++|++...
T Consensus 1 m~i~vr~~~G~~-~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-L-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-E-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-E-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 789999999965 4 67 999999999999999999999999999987 47774 2389999999999999998543
No 182
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.19 E-value=3.5e-11 Score=97.57 Aligned_cols=82 Identities=13% Similarity=0.205 Sum_probs=76.5
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
.+..|.|.|++.+|+.+. +.|.+++++..|+...+++.|+|++++||+|.|+.|.+ +.|.++|++.++++|++++..+
T Consensus 23 ~~~~I~IkVk~~~g~~i~-fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~-~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMF-FRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDE-TKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCCEEEEEEETTSCCEE-EEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCS-SSHHHHHHCSSEEEEEEECCCC
T ss_pred CCCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEccc
Confidence 346799999999999999 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceee
Q 036691 138 EILS 141 (426)
Q Consensus 138 ~g~~ 141 (426)
||..
T Consensus 101 Gg~~ 104 (110)
T 2k8h_A 101 GGLE 104 (110)
T ss_dssp CC--
T ss_pred Cccc
Confidence 8864
No 183
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.15 E-value=3.2e-11 Score=116.59 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=68.0
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE---eCCeEeecccccccccccccCcEEEEEeec
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV---YDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
..|.|.||. +|+++. +++++++||.+||++|++++|+||++|+|+ |+|+.|.| +.+|++|+|++|++|+|+...
T Consensus 4 ~~i~i~Vk~-~g~~~~-v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D-~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYP-VDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD-NVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp CEEEEEEEE-TTEEEE-EEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT-TSBTTSSCCC--CEEEEECCC
T ss_pred ceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc-cccHHHcCCCCCCEEEEEccc
Confidence 568899997 899999 999999999999999999999999999999 89999999 999999999999999997654
Q ss_pred c
Q 036691 137 K 137 (426)
Q Consensus 137 ~ 137 (426)
.
T Consensus 81 ~ 81 (320)
T 3shq_A 81 E 81 (320)
T ss_dssp C
T ss_pred h
Confidence 3
No 184
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.13 E-value=2.3e-10 Score=87.47 Aligned_cols=73 Identities=14% Similarity=0.279 Sum_probs=69.2
Q ss_pred CCceeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 59 LSEMKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
+..|.|.|++.+|+ .+. +.|.+++++..|+...+++.|+++++++|+|.|+.|.+ +.|.++|++.+|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~-~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLE-ISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSG-KELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEE-EEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCS-CCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEE-EEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEe
Confidence 46799999999996 888 99999999999999999999999999999999999999 999999999999999973
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.95 E-value=2.6e-09 Score=85.06 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=62.2
Q ss_pred CcEEEEEe---cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC-------eec-CCCCccccCCCCCCCEEE
Q 036691 285 PFQIFVKT---WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG-------KRL-FENHVLARYNIQKHSTLH 353 (426)
Q Consensus 285 ~m~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-------k~L-~d~~tL~~y~I~~~~ti~ 353 (426)
.+.|.|+. .+|+.+...+.++.||++||.+|+..+|+|+..|+|+|.+ ..| +|.++|++|+|.+|++||
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 35666764 4778999999999999999999999999999999999873 225 678899999999999999
Q ss_pred EEe
Q 036691 354 MVL 356 (426)
Q Consensus 354 l~~ 356 (426)
+.-
T Consensus 89 V~d 91 (97)
T 1wjn_A 89 VRW 91 (97)
T ss_dssp EEC
T ss_pred EEe
Confidence 975
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.95 E-value=2e-09 Score=85.64 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=62.3
Q ss_pred ceeEEEEc---CCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC-------eEeecccccccccccccCcEE
Q 036691 61 EMKLFVKI---PTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG-------KLLKEDTATMTSMNIKSESII 130 (426)
Q Consensus 61 ~m~i~Vk~---~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g-------~~L~d~~~tL~~y~I~~~s~i 130 (426)
.+.|+|+. .+|+.+. ..++++.||.+||.+|+...|+|+..|+|.|.+ ..|+||..+|++|++.+|++|
T Consensus 9 ~v~l~I~~~~~~~~~~~e-~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred cEEEEEEecCCCCCcEEE-EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 34566654 3677888 999999999999999999999999999999873 236666999999999999999
Q ss_pred EEEee
Q 036691 131 HLVFC 135 (426)
Q Consensus 131 ~l~~~ 135 (426)
|+...
T Consensus 88 ~V~d~ 92 (97)
T 1wjn_A 88 LVRWS 92 (97)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 98653
No 187
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.95 E-value=9.6e-09 Score=91.72 Aligned_cols=79 Identities=6% Similarity=0.137 Sum_probs=74.0
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
..++|.|+. +|+.+.+.|.+++++..|+...+++.|+|+.++||+|+|+.|.++.|..++++++|++|++++.+.||..
T Consensus 28 ~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~k 106 (200)
T 3pge_A 28 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGG 106 (200)
T ss_dssp CCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-
T ss_pred CeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcC
Confidence 357888975 8999999999999999999999999999999999999999999999999999999999999999998854
No 188
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=7e-09 Score=84.20 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=72.5
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS 360 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g 360 (426)
..++|.|++.+|..+.+.|.+++++..|+...+++.|+++..+||+|+|+.|.++.|..++++++|++|+++....|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999987543
No 189
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.83 E-value=1.8e-06 Score=89.00 Aligned_cols=322 Identities=12% Similarity=0.128 Sum_probs=212.0
Q ss_pred ccCCCCCHHHHHHHHHHHhCCCcccceEEec-----C-ee--cc-----CCC-cccCCCCCCCeEEEEE--ec-------
Q 036691 2 KVKKSEPIKNLKAMIHVKEGISEDICDLFFA-----G-DR--LE-----AGR-LVDYGIRNNSTLHFLH--QN------- 58 (426)
Q Consensus 2 ~v~~~dtv~~~K~~i~~~~gi~~~~q~L~~~-----g-~~--L~-----d~~-l~~y~i~~~~~l~l~~--~~------- 58 (426)
+|....|+.++|.++.+..|+|+++|||-.. + .+ +. ... +.++. .++..+.|.+ ..
T Consensus 41 rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~~~~~~ 119 (530)
T 2ylm_A 41 KVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPELAASG 119 (530)
T ss_dssp EEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHHHHTTT
T ss_pred EEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccccCCcc
Confidence 5778999999999999999999999999642 1 12 11 111 22211 1233344433 11
Q ss_pred --------CCceeEEEEcCC--CceeE---EEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC------CeEeecccccc
Q 036691 59 --------LSEMKLFVKIPT--NQTAT---VVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD------GKLLKEDTATM 119 (426)
Q Consensus 59 --------~~~m~i~Vk~~~--g~~~~---~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g~~L~d~~~tL 119 (426)
...+-||+|..+ .+++. .+.|+.+++|.++-..|.++.|+|++.-..+|. ...|+++..|+
T Consensus 120 ~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~ 199 (530)
T 2ylm_A 120 ATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSL 199 (530)
T ss_dssp CCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBH
T ss_pred ccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccH
Confidence 125788998753 33322 147789999999999999999999998777775 33566448899
Q ss_pred ccc--ccccCcEEEEEeeccc------------------eeeeEeec---ccCcEEEEeccCCCcHHHHHHHHhhhhCCC
Q 036691 120 TSM--NIKSESIIHLVFCPKE------------------ILSIFVKA---ATGEIVNLEVKHSFAIRDVKAIVGSVVGVS 176 (426)
Q Consensus 120 ~~y--~I~~~s~i~l~~~~~~------------------g~~i~Vk~---~~gk~~~i~v~~~~tV~~lK~~I~~~~gip 176 (426)
.+. .+.+|+.|-......+ -+.+.++. .+...+.+++....|-.++-+.|.++.|++
T Consensus 200 ~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~d 279 (530)
T 2ylm_A 200 DKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTD 279 (530)
T ss_dssp HHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSC
T ss_pred HHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCC
Confidence 999 9999999987655331 12232222 357779999999999999999999999999
Q ss_pred CCcEEEEEC----Ce---e--ccCCCCcccccCCC----cceeeec-----------cCcceeEEEcCCCc--EEEEeec
Q 036691 177 AADHIMIYE----GK---K--LEDSKTLAFYDMKD----ECLLEMF-----------PSSIQIFVRTPIEE--IVRLEVE 230 (426)
Q Consensus 177 ~~~q~L~~~----g~---~--L~d~~tL~~y~I~~----~s~i~l~-----------~~~~~i~V~~~~g~--~~~l~v~ 230 (426)
|+.-+|.-. |. . .....+|.+.=-.. ...++-- ...+.|+....+.+ .+.+-++
T Consensus 280 P~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vp 359 (530)
T 2ylm_A 280 PMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPD 359 (530)
T ss_dssp GGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCB
T ss_pred chhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcC
Confidence 999877522 22 1 22233443322111 1112111 22355554444333 3667778
Q ss_pred ccccHHHHHHHHHHHhCCCC---CceeEE--ecC---eecCCCccccccCCCCCccccc--CC---------CCcEEEEE
Q 036691 231 VLIVVRDVKEIVANIIDLSL---GNQDLF--YAG---TKLEACKTLASYGIKNNYVLDV--LP---------SPFQIFVK 291 (426)
Q Consensus 231 ~~~tV~~lK~~I~~~~~ip~---~~q~L~--~~g---~~L~d~~tL~~y~I~~~~~l~l--~~---------~~m~i~v~ 291 (426)
.+.||++|-+.+..+.+++. .+.++. +++ +.+.++.++...+=....++++ +| ..+.|.|-
T Consensus 360 K~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~ 439 (530)
T 2ylm_A 360 KHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVA 439 (530)
T ss_dssp TTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEE
T ss_pred CCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEEEEE
Confidence 89999999999999999873 455653 555 4467777776543222334444 11 12334442
Q ss_pred ec-------CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc
Q 036691 292 TW-------GGKTITLDVQPYNTVQDVKVKLFDKLQTPLH 324 (426)
Q Consensus 292 ~~-------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~ 324 (426)
-. -|..|.+.|.+++|..++|++|++++|++..
T Consensus 440 hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 440 HFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred EeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 22 3678889999999999999999999999966
No 190
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.2e-08 Score=89.05 Aligned_cols=79 Identities=5% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
..++|.|+. +|..+.+.|.+++++..|+...+++.|+|+.+++|+|+|+.|.++.|..++++++||+|++++...||..
T Consensus 56 e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~~ 134 (207)
T 3tix_A 56 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGLP 134 (207)
T ss_dssp CEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTGG
T ss_pred CcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 347788875 8999999999999999999999999999999999999999999999999999999999999999999965
No 191
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.67 E-value=1.2e-07 Score=76.87 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=70.7
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
..+.|.|+..+|+.+. +.|.+++++..|+...+++.|++++++|++|.|+.|.+ +.|..++++.+|++|++.+..
T Consensus 39 ~~I~LKV~~qdg~ev~-fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~-~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCT-TCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEE-EEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCC-CCCHHHcCCCCCCEEEEEeec
Confidence 5788999998999998 99999999999999999999999999999999999999 999999999999999987653
No 192
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.3e-07 Score=84.34 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=73.7
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
+...++|.|+. +|+.+. +.|.+++++..|+...+++.|+|++++|++|.|+.|.+ +.|..++++.+|++|++++...
T Consensus 26 ~~~~I~LkV~~-~g~~v~-fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~-~~TP~dL~MEdgD~Idv~~~q~ 102 (200)
T 3pge_A 26 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHREQI 102 (200)
T ss_dssp CCCCEEEEEEC-SSCEEE-EEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEECCS
T ss_pred CCCeEEEEEec-CCCEEE-EEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEeccC
Confidence 35678889985 899998 99999999999999999999999999999999999999 9999999999999999999987
Q ss_pred ce
Q 036691 138 EI 139 (426)
Q Consensus 138 ~g 139 (426)
||
T Consensus 103 gg 104 (200)
T 3pge_A 103 GG 104 (200)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 193
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.57 E-value=7.6e-09 Score=91.56 Aligned_cols=79 Identities=6% Similarity=0.168 Sum_probs=2.0
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
..|+|.| +.+|+.+.+.|.+++++..|++..+++.|+|+.++|++|+|+.+.++.|..++++++||+|+++....||..
T Consensus 20 e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~ 98 (227)
T 3v7o_A 20 THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLT 98 (227)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCch
Confidence 3578889 779999999999999999999999999999999999999999999999999999999999999999999955
No 194
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.8e-07 Score=81.65 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=74.2
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
+...|.|.|+. +|..+. +.|.+++++..|+...+++.|+++++++++|.|+.|.+ +.|..++++.+|++|++++...
T Consensus 54 p~e~InLKVk~-dG~eV~-FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~-ddTPeDLdMEDGDtIDV~leQ~ 130 (207)
T 3tix_A 54 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQA-DQTPEDLDMEDNDIIEAHREQI 130 (207)
T ss_dssp -CCEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCS-SCCTTTTTCCTTEEEEECCCCC
T ss_pred CCCcEEEEEec-CCCEEE-EEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCC-CCCHHHcCCCCCCEEEEEEecc
Confidence 34678888975 899998 99999999999999999999999999999999999999 9999999999999999999998
Q ss_pred cee
Q 036691 138 EIL 140 (426)
Q Consensus 138 ~g~ 140 (426)
||.
T Consensus 131 GG~ 133 (207)
T 3tix_A 131 GGL 133 (207)
T ss_dssp TTG
T ss_pred CCC
Confidence 874
No 195
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.40 E-value=2.7e-06 Score=62.85 Aligned_cols=71 Identities=15% Similarity=0.302 Sum_probs=65.4
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc-ceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH-LQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
+.+..+.....-+.+.+.++.+|.+|.+.-+.+.|||++ ..+|.|.|..|+++.++.+|++++|+.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 456677776677889999999999999999999999999 99999999999999999999999999998875
No 196
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.39 E-value=0.00017 Score=74.21 Aligned_cols=319 Identities=14% Similarity=0.110 Sum_probs=202.7
Q ss_pred eEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe----CCe--E--eecc----ccccccccc-ccCcEEEEEeecc---
Q 036691 74 ATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY----DGK--L--LKED----TATMTSMNI-KSESIIHLVFCPK--- 137 (426)
Q Consensus 74 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~----~g~--~--L~d~----~~tL~~y~I-~~~s~i~l~~~~~--- 137 (426)
.. +.|..++|+.+||++|++..|+|+++|||-. .++ . +.++ +.++.++.- .+.-++.+-....
T Consensus 38 ~~-~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TV-FKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELA 116 (530)
T ss_dssp EE-EEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHH
T ss_pred ce-EEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccC
Confidence 35 8899999999999999999999999999842 111 1 1110 123333321 1223344322110
Q ss_pred ------------ceeeeEeecc--cCcEEE----EeccCCCcHHHHHHHHhhhhCCCCCcEEEEEC------Ceecc-CC
Q 036691 138 ------------EILSIFVKAA--TGEIVN----LEVKHSFAIRDVKAIVGSVVGVSAADHIMIYE------GKKLE-DS 192 (426)
Q Consensus 138 ------------~g~~i~Vk~~--~gk~~~----i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g~~L~-d~ 192 (426)
.-+-+|+|-+ ..+++. +.+...++|+++-..|.+..|+|++.-...|. ...|+ ..
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 0245566644 345554 47888999999999999999999998777773 23467 68
Q ss_pred CCcccc--cCCCcceeeec---c-C-----------------cceeEEEc---CCCcEEEEeecccccHHHHHHHHHHHh
Q 036691 193 KTLAFY--DMKDECLLEMF---P-S-----------------SIQIFVRT---PIEEIVRLEVEVLIVVRDVKEIVANII 246 (426)
Q Consensus 193 ~tL~~y--~I~~~s~i~l~---~-~-----------------~~~i~V~~---~~g~~~~l~v~~~~tV~~lK~~I~~~~ 246 (426)
.|+... .+.+|+.|..= + . .+.|.+.. .+...+.++++...|-.++.++|.++.
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 99999998553 1 0 12233332 346669999999999999999999999
Q ss_pred CCCCCceeEEec----C---eec--CCCccccccCCC---C-Cccccc--C---------CCCcEEEEEecCCc--EEEE
Q 036691 247 DLSLGNQDLFYA----G---TKL--EACKTLASYGIK---N-NYVLDV--L---------PSPFQIFVKTWGGK--TITL 300 (426)
Q Consensus 247 ~ip~~~q~L~~~----g---~~L--~d~~tL~~y~I~---~-~~~l~l--~---------~~~m~i~v~~~~g~--~~~l 300 (426)
++.|..-++.-. + ..+ ..+.+|.+.=-. + ...++. + ...|.|+......+ .+.+
T Consensus 277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l 356 (530)
T 2ylm_A 277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITL 356 (530)
T ss_dssp TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEE
T ss_pred CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEE
Confidence 999988776522 1 122 223344432111 1 122222 1 23466655544332 5667
Q ss_pred EEcCCCcHHHHHHHHHhHhCCC---CcceEE--EEcCe---ecCCCCccccCCCCCCCEEEEE-----------------
Q 036691 301 DVQPYNTVQDVKVKLFDKLQTP---LHLQSI--VFAGK---RLFENHVLARYNIQKHSTLHMV----------------- 355 (426)
Q Consensus 301 ~v~~~~tV~~lK~~i~~~~gip---~~~q~L--~~~gk---~L~d~~tL~~y~I~~~~ti~l~----------------- 355 (426)
-+..+.||.+|-+.++.+.+++ ....|+ ++++| .+.++.+++..+=....++++-
T Consensus 357 ~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li 436 (530)
T 2ylm_A 357 YPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLV 436 (530)
T ss_dssp CCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEE
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEE
Confidence 7778999999999999999997 456676 57775 4566777765432113333331
Q ss_pred --eecCCCcccCCceeeccccCCCCCHHHHHHHHHHhcCc
Q 036691 356 --LAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQA 393 (426)
Q Consensus 356 --~~~~gg~~~~~~~~~~~~~~~~~~v~~~k~~i~~~~~~ 393 (426)
..........-|...-..+.+..+..++|+.|+.++..
T Consensus 437 ~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv 476 (530)
T 2ylm_A 437 TVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDI 476 (530)
T ss_dssp EEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCC
T ss_pred EEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCC
Confidence 11111111122444556788888999999999999544
No 197
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.35 E-value=2.1e-07 Score=70.97 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=61.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCee-----cCCCCccccCCCCCCCEEEEE
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKR-----LFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~-----L~d~~tL~~y~I~~~~ti~l~ 355 (426)
.+|.|.|++.+| ++.+++++++|+.+|+++|++++++|++.|.+.++... +.++.+|+++||+.|++|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358899999876 67789999999999999999999999999888776655 347889999999999999874
No 198
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.26 E-value=1.1e-07 Score=84.15 Aligned_cols=83 Identities=13% Similarity=0.205 Sum_probs=2.4
Q ss_pred ecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691 57 QNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP 136 (426)
Q Consensus 57 ~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~ 136 (426)
.+...|.|.| ..+|+.+. +.|.++++...|+...+++.|++++++|++|.|+.+.+ +.|.+++++.+|++|+++...
T Consensus 17 ~p~e~InLKV-~qdGseV~-FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~d-ddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEE-EEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCC-CCCHHHcCCCCCCEEEEEecc
Confidence 3457888999 77899998 99999999999999999999999999999999999999 999999999999999999999
Q ss_pred cceeee
Q 036691 137 KEILSI 142 (426)
Q Consensus 137 ~~g~~i 142 (426)
.||..+
T Consensus 94 ~GG~~~ 99 (227)
T 3v7o_A 94 IGGLTL 99 (227)
T ss_dssp --CCCH
T ss_pred cCCchH
Confidence 998644
No 199
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.23 E-value=3.4e-06 Score=65.65 Aligned_cols=64 Identities=13% Similarity=0.229 Sum_probs=50.8
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeec--CCCCccccCCC-CCCCEEEEEe
Q 036691 293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRL--FENHVLARYNI-QKHSTLHMVL 356 (426)
Q Consensus 293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L--~d~~tL~~y~I-~~~~ti~l~~ 356 (426)
..+..+.+.+.|++||..+|++|++++|||+++|+|+|+|+.| +++..-..|-- .....|.|+-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 3678899999999999999999999999999999999999876 45555556643 3344454443
No 200
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.15 E-value=9.2e-07 Score=67.40 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=60.1
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeE-----eecccccccccccccCcEEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKL-----LKEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-----L~d~~~tL~~y~I~~~s~i~l 132 (426)
..|.|.||+.+| +.. +++++++|+.+|+++|++..+++++.|.+.++... +.. +.+|+++||++|++|++
T Consensus 3 ~~m~lRvrs~~G-~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~-~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS-SKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCCCEEECSSE-EEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCC-CCTTTTTCCCTTCCEEC
T ss_pred CcEEEEEECCCC-CEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCC-CCCHHHcCCCCCCEEEE
Confidence 458899999887 666 88999999999999999999999999888766554 334 78999999999999986
No 201
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.14 E-value=1e-05 Score=63.68 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=67.1
Q ss_pred CCcEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691 284 SPFQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 284 ~~m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~ 355 (426)
..+.|.|+..+|. .+.+.|.++++...|...-+++.|+++...+++|.|..|.++.|..++++++|++|.+.
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4577888888884 89999999999999999999999999999999999999999999999999999999874
No 202
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.12 E-value=2e-05 Score=58.16 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=61.8
Q ss_pred eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCC-ceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691 63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSD-QFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~ 134 (426)
.+.++......+. +.|.++.+|..+-+.-..+.|||++ ..+|.|.|..|.. +.++.||++.+++.|.+++
T Consensus 11 ~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp-~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDP-NDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEE-EEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCT-TSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeE-EEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCc-cCChhhhCCcCCceeeeee
Confidence 4445555556677 8999999999999999999999999 8999999999999 9999999999999998754
No 203
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.11 E-value=9e-06 Score=63.27 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=48.4
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeec-cccccccccc-ccCcEEEE
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKE-DTATMTSMNI-KSESIIHL 132 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d-~~~tL~~y~I-~~~s~i~l 132 (426)
.+..+. +.+.+++||..+|++|++++|||+++|+|+|+|+.|.- ++.....|-- ...+-|.|
T Consensus 22 ~a~~h~-v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L 85 (94)
T 4efo_A 22 QMTAHK-IYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFV 85 (94)
T ss_dssp TTEEEE-EEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEE
T ss_pred cceEEE-EEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEE
Confidence 677888 99999999999999999999999999999999987653 2455555543 23344444
No 204
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.09 E-value=1.1e-05 Score=73.11 Aligned_cols=79 Identities=6% Similarity=0.164 Sum_probs=73.8
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
..+.|.|++ +|..+.+.+.++++...|+...+++.|+|+++++++|.|+.+.++.|..+.+++++++|.+.....||..
T Consensus 20 ~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~t 98 (209)
T 3uf8_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGST 98 (209)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCCC
T ss_pred CcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccccc
Confidence 347788887 7888899999999999999999999999999999999999999999999999999999999999998854
No 205
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.03 E-value=6.8e-07 Score=86.49 Aligned_cols=79 Identities=6% Similarity=0.175 Sum_probs=1.2
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
..++|.|++ +|..+.+.|.++++...|++..+++.|+++..++++|+|+.+.++.|..++++++|++|+++....||+.
T Consensus 20 ~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMR 98 (360)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred CeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHH
Confidence 346788887 6888999999999999999999999999999999999999999999999999999999999999999965
No 206
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.01 E-value=0.00017 Score=71.06 Aligned_cols=136 Identities=21% Similarity=0.241 Sum_probs=110.9
Q ss_pred CcEEEEeecccccHHHHHHHHHHHhC----CCCCceeEEec------CeecCCCccccccCCCCCcccccCCCCcEEEEE
Q 036691 222 EEIVRLEVEVLIVVRDVKEIVANIID----LSLGNQDLFYA------GTKLEACKTLASYGIKNNYVLDVLPSPFQIFVK 291 (426)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~~----ip~~~q~L~~~------g~~L~d~~tL~~y~I~~~~~l~l~~~~m~i~v~ 291 (426)
+-+.++..+|++||.++-.+|.++.. .+.++..|+.. |.=|++.+||..|++++++.+..-+.++.+.|.
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~ 91 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIR 91 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEE
Confidence 66789999999999999999988874 35677788773 344888999999999999999987888999999
Q ss_pred ecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEEcC---------eecCCCCccccCCCCCCCEEEEEee
Q 036691 292 TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVFAG---------KRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 292 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~g---------k~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
.++|....+.++++.|+.++-..|+.+.|+..... -|.+.. .-|+.++++.+.+.....++++..+
T Consensus 92 l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 92 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 99999999999999999999999999999876543 454432 4456677888877767777666444
No 207
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.99 E-value=2.2e-05 Score=60.16 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=70.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
..|.+.|-..+|+..++.|.|+.++.++-+..+.++|+.+++..|.|+++.|+-+.+++-.||.+|+++.|+-.-+
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999986543
No 208
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.91 E-value=0.00029 Score=69.42 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=102.6
Q ss_pred CcEEEEeccCCCcHHHHHHHHhhhhC----CCCCcEEEEE------CCeeccCCCCcccccCCCcceeeeccCcceeEEE
Q 036691 149 GEIVNLEVKHSFAIRDVKAIVGSVVG----VSAADHIMIY------EGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVR 218 (426)
Q Consensus 149 gk~~~i~v~~~~tV~~lK~~I~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~y~I~~~s~i~l~~~~~~i~V~ 218 (426)
+-+-++..+++.||.++...|.++.. .+.+++-|.. .|.+|++.+||..|++.+|+.++..+..+.+.|.
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~ 91 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIR 91 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEE
Confidence 45557888999999999999988875 4678889988 6788999999999999999999999888999999
Q ss_pred cCCCcEEEEeecccccHHHHHHHHHHHhCCCCCc-eeEEecC---------eecCCCccccccCC
Q 036691 219 TPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGN-QDLFYAG---------TKLEACKTLASYGI 273 (426)
Q Consensus 219 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~g---------~~L~d~~tL~~y~I 273 (426)
.++|....+++++++|+.++=..|..+.|+.... ..|.+.. .-|+.++++.+.+.
T Consensus 92 l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 92 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred CcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence 9999999999999999999999999999987433 4455431 22455556665544
No 209
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.89 E-value=6.1e-05 Score=68.14 Aligned_cols=96 Identities=13% Similarity=0.147 Sum_probs=81.5
Q ss_pred EecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691 56 HQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 56 ~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
+.+.+.+.|.|+. +|+.+. +.+.++++...|+...+++.|+|+++++++|.|+.+.+ +.|..+..+.++++|.+...
T Consensus 16 ~~~~~~i~ikv~~-~~~~v~-~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~-~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 16 VKPETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp --CCSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCT-TCCTTTTTCCTTEEEEEECS
T ss_pred eCCCCcEEEEEEc-CCCEEE-EEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccC-CCChHHhhhcccccchhhcc
Confidence 3456788888887 788888 99999999999999999999999999999999999999 99999999999999999888
Q ss_pred ccceeeeEeecccCcEEEEe
Q 036691 136 PKEILSIFVKAATGEIVNLE 155 (426)
Q Consensus 136 ~~~g~~i~Vk~~~gk~~~i~ 155 (426)
..||..+ +.+.+|-.+.+.
T Consensus 93 q~Gg~t~-~~~~sGl~~~vl 111 (209)
T 3uf8_A 93 QIGGSTV-VTTESGLKYEDL 111 (209)
T ss_dssp CTTCCCC-EECTTSCEEEEE
T ss_pred ccccccc-cCCCCceEEEEE
Confidence 8877643 445666655443
No 210
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.86 E-value=4.9e-05 Score=58.29 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=68.3
Q ss_pred cceeeeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeeec
Q 036691 137 KEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMF 209 (426)
Q Consensus 137 ~~g~~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l~ 209 (426)
.+||.+.|-.+++++.++.+.++.++.++-+.-.+++|+.++++.|.|+++.++-+..++.-++.+|+.++|+
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEE
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999998
No 211
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.85 E-value=9.2e-05 Score=57.28 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=67.6
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
..+.|.|+. +|....+.+..++....|....+++.|+++...|++|.|..+.++.|-.+.++++|++|.+++
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 347888985 789999999999999999999999999999999999999999999999999999999998875
No 212
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.78 E-value=3.3e-06 Score=81.72 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=2.4
Q ss_pred cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
+...+.|.|+. +|+.+. +.|.++++...|+...+++.|+++++++++|.|+.+.+ +.|.+++++++|++|++.....
T Consensus 18 ~~~~I~LKV~~-~g~~v~-FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~-~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEE-EEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCC-CCChHHcCCCccchhhhhhccC
Confidence 55678888887 788888 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeeeE
Q 036691 138 EILSIF 143 (426)
Q Consensus 138 ~g~~i~ 143 (426)
|||..+
T Consensus 95 g~~~~Y 100 (360)
T 3ix6_A 95 GGMRTY 100 (360)
T ss_dssp --CHHH
T ss_pred chHHHH
Confidence 998554
No 213
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.70 E-value=4.9e-05 Score=62.62 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=59.6
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc-------------------------------------ceEEE
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH-------------------------------------LQSIV 329 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-------------------------------------~q~L~ 329 (426)
.+.|+.++|...++.|+.+.+|.+++..|+.+.||+.. .|+|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58999999999999999999999999999999999855 33332
Q ss_pred E--cCeecCCCCccccCCCCCCCEEEEEee
Q 036691 330 F--AGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 330 ~--~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
. ++..|++++||.++||.++++|-|-.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 236788899999999999999866443
No 214
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.70 E-value=0.00017 Score=56.59 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=66.5
Q ss_pred cCCceeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEE
Q 036691 58 NLSEMKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 58 ~~~~m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l 132 (426)
.+..+.|.|+..+|. .+. +.|.++++...|...-+++.|++++..+++|.|..|.. +.|..++++.+|++|.+
T Consensus 22 ~~~~I~LkV~~~dg~~~v~-fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~-~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLE-VSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSG-RELPADLGMESGDLIEV 95 (97)
T ss_dssp SCSEEEEEEEESSSSCEEE-EEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCS-CSCHHHHTCCTTEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEE-EEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEE
Confidence 346778888887885 788 99999999999999999999999999999999999999 99999999999999986
No 215
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.57 E-value=9.9e-06 Score=80.51 Aligned_cols=78 Identities=6% Similarity=0.147 Sum_probs=0.0
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
.+.|.|++ +|..+.+.+.++++...|+...+++.|+|+.+++++|+|+.+.++.|..++++++|++|+++....||..
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 45677777 7888899999999999999999999999999999999999999999999999999999999999988854
No 216
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.46 E-value=0.00034 Score=52.84 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=59.6
Q ss_pred cEEEEEe--cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC-----cceEEEEcCeecCCCCccccCCCCCCCEEEE
Q 036691 286 FQIFVKT--WGGKTITLDVQPYNTVQDVKVKLFDKLQTPL-----HLQSIVFAGKRLFENHVLARYNIQKHSTLHM 354 (426)
Q Consensus 286 m~i~v~~--~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-----~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l 354 (426)
+.|++.. +.|+++.++++...||..|+..+.+.++++. .+.|..-.|..|.++++|++|+|.+||.|.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 3456654 6889999999999999999999999998776 3456788899999999999999999999975
No 217
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.35 E-value=0.00019 Score=59.07 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=59.4
Q ss_pred eeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCC-cEEEEE-----------------------------------
Q 036691 141 SIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAA-DHIMIY----------------------------------- 184 (426)
Q Consensus 141 ~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~----------------------------------- 184 (426)
.+.|+.++|...++.|+.+.||.+++..|.++.||+.. .+.|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 56889999999999999999999999999999998854 344432
Q ss_pred ---CCeeccCCCCcccccCCCcceeeec
Q 036691 185 ---EGKKLEDSKTLAFYDMKDECLLEMF 209 (426)
Q Consensus 185 ---~g~~L~d~~tL~~y~I~~~s~i~l~ 209 (426)
.+.+|++++||.+++|.+++++-|+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 1378999999999999999998886
No 218
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.20 E-value=0.0021 Score=49.68 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=65.5
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~ 134 (426)
..+.|.|+. +|.... +.+..++....|...-+++.|++++..|++|.|..+.+ +.|-.+.++.++++|.+++
T Consensus 20 ~~IniKV~~-~g~ev~-FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~-~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIRC-RADLVR-LPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSP-TATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEEC-SSSEEE-EEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCT-TSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEEc-CCcEEE-EEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCC-CCCHhHcCCCCCCEEEEEE
Confidence 457778885 678888 99999999999999999999999999999999999999 9999999999999998743
No 219
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.15 E-value=6.2e-05 Score=74.75 Aligned_cols=83 Identities=11% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
...+.|.|+. +|..+. +.|.++++...|+...+++.|+++++++++|.|+.+.+ +.|.+++++.+|++|.+.....|
T Consensus 28 ~~~i~lkv~~-~~~~~~-~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~-~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEE-EEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHcCCCCCCEeeeeecccc
Confidence 3567777877 778888 99999999999999999999999999999999999999 99999999999999999999888
Q ss_pred eeeeEe
Q 036691 139 ILSIFV 144 (426)
Q Consensus 139 g~~i~V 144 (426)
|...++
T Consensus 105 g~n~~~ 110 (389)
T 4da1_A 105 GENLYF 110 (389)
T ss_dssp ------
T ss_pred ccccce
Confidence 876654
No 220
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.96 E-value=0.0036 Score=47.67 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=60.3
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC---CCCccccCCCCCCCEEEEE
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF---ENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~---d~~tL~~y~I~~~~ti~l~ 355 (426)
...|.|+.++|..+.-.+..++||.+|..-|.. .+.+...+.|+ |-.+.+. .+.||.+.|+.+.++|.+-
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 356889999999999999999999999999998 67888888997 4578883 4789999999999998764
No 221
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.85 E-value=0.0043 Score=46.76 Aligned_cols=69 Identities=9% Similarity=0.236 Sum_probs=57.8
Q ss_pred eeEEEEc--CCCceeEEEEEcCCCcHHHHHHHHHHHhCCCC-----CceEEEeCCeEeecccccccccccccCcEEEE
Q 036691 62 MKLFVKI--PTNQTATVVEAMPYHTVQNIKTMIQVKEGIQS-----DQFTLVYDGKLLKEDTATMTSMNIKSESIIHL 132 (426)
Q Consensus 62 m~i~Vk~--~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~-----~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l 132 (426)
+.|++.. -.|+++. +.++...||..|.+.+.+..+++. .+.+..-.|..|.+ +.+|+||+|.+|+.+.+
T Consensus 5 I~ITidl~~y~~~~~D-LRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~-~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFD-LRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSG-ECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEE-EEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEET-TSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEE-EECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcC-CCEEeeCCcCCCCEEEE
Confidence 4455554 4789999 999999999999999999998753 24566778889999 99999999999999875
No 222
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.59 E-value=0.011 Score=44.98 Aligned_cols=72 Identities=11% Similarity=0.270 Sum_probs=60.9
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l~ 133 (426)
+...|-||.++|+.+. -....++||.+|..-|.. .+.++....|+ |-.+.|. |.+.||.+.|+.+++++.+.
T Consensus 6 ~~~~i~iRlpdG~r~~-~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CeEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 4567888999999887 888899999999999988 67788888888 5578885 44789999999999998874
No 223
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.24 E-value=0.023 Score=45.19 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=50.4
Q ss_pred CcEEEEEec--CCcEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE----cCeecCCC------------
Q 036691 285 PFQIFVKTW--GGKTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF----AGKRLFEN------------ 338 (426)
Q Consensus 285 ~m~i~v~~~--~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~----~gk~L~d~------------ 338 (426)
++.++|-.. ++..+.+.|-..|||.++|++|-+. .|.|. ++..|-| .|+.|.|.
T Consensus 11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkr 90 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKR 90 (111)
T ss_dssp EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCC
T ss_pred EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceE
Confidence 344555433 3466888999999999999999875 35554 4556766 24566552
Q ss_pred -CccccCCCCCCCEEEEEee
Q 036691 339 -HVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 339 -~tL~~y~I~~~~ti~l~~~ 357 (426)
.||++|+|.+|+++.|+.+
T Consensus 91 LNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 91 VNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCBHHHHTCCTTCEEEEEEC
T ss_pred ecchhhcCCCCCCEEEEEeC
Confidence 5899999999999988754
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.05 E-value=0.034 Score=44.49 Aligned_cols=75 Identities=8% Similarity=0.194 Sum_probs=63.4
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEEEee
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHLVFC 135 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l~~~ 135 (426)
....|-||.++|..+. -....++||.+|.+-|....+.+.....|+ |-.+.+. |.+.||.+.|+.+.+++.+...
T Consensus 12 ~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFT-NQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CCEEEEEECSSSCEEE-EEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 4578899999999888 899999999999999999888777777787 5678886 4478999999999988887543
No 225
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.96 E-value=0.025 Score=46.38 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=61.6
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeec--CC-CCccccCCCCCCCEEEEE
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRL--FE-NHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L--~d-~~tL~~y~I~~~~ti~l~ 355 (426)
.+...|.||.++|..+.-.+.+++||.+|..-|... +.+.....|+ |-.+.| .| +.||.+.|+.+..+|.+.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 345779999999999999999999999999999887 8888888886 457888 34 789999999998888664
No 226
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.90 E-value=0.059 Score=43.77 Aligned_cols=65 Identities=23% Similarity=0.355 Sum_probs=50.0
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE-cC---e-ecCCC-------------CccccCCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF-AG---K-RLFEN-------------HVLARYNIQ 347 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~g---k-~L~d~-------------~tL~~y~I~ 347 (426)
++..+.+.|-..|||.++|++|.+. .|.|. ++..|-| .| + .|.|. .||.+|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4567889999999999999999875 35554 5677766 23 3 36552 589999999
Q ss_pred CCCEEEEEeec
Q 036691 348 KHSTLHMVLAP 358 (426)
Q Consensus 348 ~~~ti~l~~~~ 358 (426)
+|+++.|..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999998664
No 227
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.85 E-value=0.031 Score=44.71 Aligned_cols=73 Identities=10% Similarity=0.122 Sum_probs=62.8
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC--C-CCccccCCCCCCCEEEEEee
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF--E-NHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~--d-~~tL~~y~I~~~~ti~l~~~ 357 (426)
...|.||.++|..+.-.+..++||.+|.+-|....+.+.....|+ |-.|.+. | +.||.+.|+.+.++|++...
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 457899999999999999999999999999999988887888885 4578886 3 68999999999988877653
No 228
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.42 E-value=0.05 Score=44.55 Aligned_cols=73 Identities=12% Similarity=0.274 Sum_probs=62.4
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEe--ecccccccccccccCcEEEEE
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLL--KEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L--~d~~~tL~~y~I~~~s~i~l~ 133 (426)
.....|-||.++|..+. -....++||.+|..-|... |.++....|+ |-.+.| .|.+.||.+.++.+.+++.+.
T Consensus 41 ~~~t~IqIRlPdG~rl~-~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 45778999999999888 8889999999999999887 7777888887 668888 455789999999998888774
No 229
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.24 E-value=0.11 Score=41.36 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=46.1
Q ss_pred CceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCeEeeccc------------cccccccccc
Q 036691 71 NQTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGKLLKEDT------------ATMTSMNIKS 126 (426)
Q Consensus 71 g~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~~L~d~~------------~tL~~y~I~~ 126 (426)
+..+. +.|-..|||.++|++|-+.. |.| +++..|-+ .|+.|.|.+ +||++|+|.+
T Consensus 23 ~~~i~-vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIP-VKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEE-EEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCcee-eeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 45566 88889999999999998763 554 45666766 345666522 4799999999
Q ss_pred CcEEEEEee
Q 036691 127 ESIIHLVFC 135 (426)
Q Consensus 127 ~s~i~l~~~ 135 (426)
|+++.|+.+
T Consensus 102 gatl~l~~~ 110 (111)
T 4e71_A 102 GATLILSKV 110 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988543
No 230
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.16 E-value=0.084 Score=42.41 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=51.8
Q ss_pred CcEEEEEecC---CcEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE-cC---e-ecCCC----------
Q 036691 285 PFQIFVKTWG---GKTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF-AG---K-RLFEN---------- 338 (426)
Q Consensus 285 ~m~i~v~~~~---g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~g---k-~L~d~---------- 338 (426)
++.++|-... ...+.+.|-..|||.++|++|.+. .|.|. ++..|-| .| + .|.|.
T Consensus 13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~w 92 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDW 92 (117)
T ss_dssp EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---C
T ss_pred EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcc
Confidence 3445544332 345888899999999999999875 35554 4556765 33 2 35442
Q ss_pred ---CccccCCCCCCCEEEEEeec
Q 036691 339 ---HVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 339 ---~tL~~y~I~~~~ti~l~~~~ 358 (426)
.||++|+|.+|+++.|+.+.
T Consensus 93 krLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 93 KRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCBHHHHTCCTTCEEEEEECC
T ss_pred eEeccccccCCCCCCEEEEEeCC
Confidence 58999999999999998764
No 231
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.02 E-value=0.12 Score=42.68 Aligned_cols=76 Identities=20% Similarity=0.345 Sum_probs=53.2
Q ss_pred CCcEEEEEecC------CcEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE----cCe-ecCCC------
Q 036691 284 SPFQIFVKTWG------GKTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF----AGK-RLFEN------ 338 (426)
Q Consensus 284 ~~m~i~v~~~~------g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~----~gk-~L~d~------ 338 (426)
.++.++|-... ...+.+.|-..|||.++|++|.+. .|+|. ++.-|-| +|+ .|.|.
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence 34556554432 256889999999999999999876 35544 3455655 233 36553
Q ss_pred -------CccccCCCCCCCEEEEEeecC
Q 036691 339 -------HVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 339 -------~tL~~y~I~~~~ti~l~~~~~ 359 (426)
.||+.|+|.+|+++.|+.+..
T Consensus 103 ~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp ETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred cCCceeecchhccCCCCCCEEEEEECCC
Confidence 489999999999999987653
No 232
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.52 E-value=0.13 Score=40.90 Aligned_cols=73 Identities=10% Similarity=0.228 Sum_probs=59.7
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee-cccccccccccccCcEEEEEe
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK-EDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~-d~~~tL~~y~I~~~s~i~l~~ 134 (426)
...+|-||.++|+.+. -....++||.+|..-|... +..+....|+ |-.+.|. |.+.||.+.|+.+.+++.+..
T Consensus 22 ~~~~IqiRlpdG~r~~-rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4578889999999887 8888999999999999965 5566677776 5678886 447899999999999887643
No 233
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=94.35 E-value=0.36 Score=39.01 Aligned_cols=60 Identities=23% Similarity=0.482 Sum_probs=43.6
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhH----hCCCC----cceEEEE-cC---eecCC----------C----CccccCCCCCC
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDK----LQTPL----HLQSIVF-AG---KRLFE----------N----HVLARYNIQKH 349 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~----~gip~----~~q~L~~-~g---k~L~d----------~----~tL~~y~I~~~ 349 (426)
..+.+.|-..|||.++|++|.+. .|.|. ++..|-| .| ..|.| + .||++|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56889999999999999999764 37765 3455544 12 23322 2 48999999999
Q ss_pred CEEEEE
Q 036691 350 STLHMV 355 (426)
Q Consensus 350 ~ti~l~ 355 (426)
+++.|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999775
No 234
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.25 E-value=0.14 Score=40.88 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=59.0
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC--CCCccccCCCCCCCEEEEEe
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF--ENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~--d~~tL~~y~I~~~~ti~l~~ 356 (426)
...|.|+..+|+.+.=.+..++||.+|..-|... +.......|+ |-.+.|. .+.||.+.|+.+..+|.+..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4678999999999999999999999999999965 5566777775 4577886 47899999999999986643
No 235
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.12 E-value=0.66 Score=33.55 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=52.7
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..|+|.|.... ...++++....||.+|.+.+ ++++....+..+|..+..+. -+++||.|.++..+.||
T Consensus 3 ~~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 3 IGMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CCEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eeEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 35888887643 34567888889999998876 67777777888999887664 68899999998877765
No 236
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.96 E-value=0.12 Score=42.35 Aligned_cols=71 Identities=14% Similarity=0.314 Sum_probs=58.5
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHh-CCCCCceEEE--eCCeEeecccccccccccccCcEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKE-GIQSDQFTLV--YDGKLLKEDTATMTSMNIKSESIIH 131 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~d~~~tL~~y~I~~~s~i~ 131 (426)
....|-||.++|..+. -....++||.+|.+-|.... +.......|+ |-.+.+.|.+.||.+.|+.+..++.
T Consensus 51 ~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCCEEEEETTTTEEE-EECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 4678999999999888 89999999999999999863 4556677777 5688998767999999999865543
No 237
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.76 E-value=0.45 Score=38.61 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=48.2
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCe-Eeeccc------------cccccccc
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGK-LLKEDT------------ATMTSMNI 124 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~d~~------------~tL~~y~I 124 (426)
++..++ +.|-..|||.++|++|-+.. |+| +++..|-| .|+ .|.|.+ .||++|+|
T Consensus 15 ~~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 15 GMDSLS-VRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCCEE-EEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCCcee-eeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 455676 88889999999999998763 554 46677776 333 355412 58999999
Q ss_pred ccCcEEEEEee
Q 036691 125 KSESIIHLVFC 135 (426)
Q Consensus 125 ~~~s~i~l~~~ 135 (426)
.+|+++.|..+
T Consensus 94 ~dgatv~l~~~ 104 (127)
T 3h6n_A 94 PEGASLAMSLI 104 (127)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999998655
No 238
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.62 E-value=0.17 Score=41.56 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=56.1
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHh-CCCCcceEEE--EcCeecCC-CCccccCCCCCCCEE
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKL-QTPLHLQSIV--FAGKRLFE-NHVLARYNIQKHSTL 352 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~-gip~~~q~L~--~~gk~L~d-~~tL~~y~I~~~~ti 352 (426)
...|.|+..+|..+.-.+..++||.+|.+-|.... +.+...+.|+ |-.+.++| +.||.+.|+.+...|
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 46789999999999999999999999999999863 4556677776 45788875 689999999985544
No 239
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.52 E-value=0.16 Score=45.73 Aligned_cols=65 Identities=8% Similarity=0.132 Sum_probs=53.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCc-ceEE--EEcC---eecCC-CCccccCCCCCCCEEEEEeecCCC
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKLQTPLH-LQSI--VFAG---KRLFE-NHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L--~~~g---k~L~d-~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
.+++.++..+||.+|++.++...++|.+ +.|| ++.+ ..|++ +.||.+++|.++..|-+-.|...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4678899999999999999999999997 6888 3322 45555 579999999999999888876655
No 240
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.39 E-value=0.24 Score=36.45 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=51.8
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|+|.|+........+++.+..||++|- ++.|+|++.-...-+|+.+..+. +.+||+|.++--..||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 778888875566678999999999875 56799999998888999887666 3359999887666665
No 241
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=92.96 E-value=0.41 Score=38.39 Aligned_cols=64 Identities=17% Similarity=0.356 Sum_probs=46.5
Q ss_pred CceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe-CC---e-Eeeccc------------ccccccccc
Q 036691 71 NQTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY-DG---K-LLKEDT------------ATMTSMNIK 125 (426)
Q Consensus 71 g~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~-~g---~-~L~d~~------------~tL~~y~I~ 125 (426)
...+. +.|-..|||.++|++|-+.. |.| +++..|-+ .| + .|.|.+ .||++|+|.
T Consensus 26 ~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 104 (117)
T 4e74_A 26 SPEVP-VKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVP 104 (117)
T ss_dssp CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCC
T ss_pred CCceE-eeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCC
Confidence 34466 88889999999999998753 555 44566765 23 3 355422 579999999
Q ss_pred cCcEEEEEee
Q 036691 126 SESIIHLVFC 135 (426)
Q Consensus 126 ~~s~i~l~~~ 135 (426)
+|+++.|+.+
T Consensus 105 dgatl~l~~~ 114 (117)
T 4e74_A 105 DGSVVALVSK 114 (117)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEeC
Confidence 9999998655
No 242
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.91 E-value=0.33 Score=44.08 Aligned_cols=65 Identities=6% Similarity=0.085 Sum_probs=54.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCc-ceEEEE-c----CeecCC-CCccccCCCCCCCEEEEEeecCCC
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKLQTPLH-LQSIVF-A----GKRLFE-NHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~-~----gk~L~d-~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
.+++.++..+||.+|++.++...++|.+ ..||-. . ...|.| +.||.++++..+..|-+=.+-..|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4567889999999999999999999997 688843 3 256665 689999999999999888876665
No 243
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.61 E-value=0.35 Score=43.90 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=54.3
Q ss_pred eEEEEEcCCCcHHHHHHHHHHHhCCCCC-ceEEEe-C----CeEeecccccccccccccCcEEEEEeeccce
Q 036691 74 ATVVEAMPYHTVQNIKTMIQVKEGIQSD-QFTLVY-D----GKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 74 ~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~-~----g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
++ ..++..+||.++++++.+..++|++ +-||-. . ...|.|.+.||.++++.++..|.+-.+-.+|
T Consensus 154 ~~-~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 154 LS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EE-EEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EE-EEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 45 6779999999999999999999997 688853 2 3477775689999999999999998886665
No 244
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.60 E-value=0.43 Score=35.55 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=55.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 298 ITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 298 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
+.-.++-..++..||+.++.+.|++.+...+...+..|+++++|.+-+++-...+.+.+...
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 44456777889999999999999999999999999999999999999999999999987653
No 245
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.59 E-value=0.52 Score=38.79 Aligned_cols=64 Identities=17% Similarity=0.369 Sum_probs=46.7
Q ss_pred ceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCe-Eeeccc------------cccccccccc
Q 036691 72 QTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGK-LLKEDT------------ATMTSMNIKS 126 (426)
Q Consensus 72 ~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~d~~------------~tL~~y~I~~ 126 (426)
..++ +.|-..|||.++|++|-+.. |+| +++.-|-+ +|+ .|.|.+ .||++|+|.+
T Consensus 41 ~~i~-VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred Ccee-EEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 4566 88999999999999998874 454 34455655 343 365511 3899999999
Q ss_pred CcEEEEEeec
Q 036691 127 ESIIHLVFCP 136 (426)
Q Consensus 127 ~s~i~l~~~~ 136 (426)
|+++.|+.+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999996664
No 246
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.29 E-value=1.2 Score=34.50 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=51.4
Q ss_pred CCcEEEEEecC------C-cEEEEEEcCCCcHHHHHHHHHhHhC-C----------CCcceEEEEcCeecCCCCccccCC
Q 036691 284 SPFQIFVKTWG------G-KTITLDVQPYNTVQDVKVKLFDKLQ-T----------PLHLQSIVFAGKRLFENHVLARYN 345 (426)
Q Consensus 284 ~~m~i~v~~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~L~~~gk~L~d~~tL~~y~ 345 (426)
.+|.|.|+.+. | ...++++....||.+|.+.+..+.. + ......+.-+|+.... ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 46888888872 3 4677888888999999999987742 1 1233556778877753 667
Q ss_pred CCCCCEEEEEeecCCC
Q 036691 346 IQKHSTLHMVLAPSSR 361 (426)
Q Consensus 346 I~~~~ti~l~~~~~gg 361 (426)
+++||.|.++..+.||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 8999999888777665
No 247
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.24 E-value=0.17 Score=37.80 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=56.0
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE---cCeecCCCCccccCCCCC
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF---AGKRLFENHVLARYNIQK 348 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~gk~L~d~~tL~~y~I~~ 348 (426)
++.+.|.....+...+.|+|.-+..+|--.|+++..+.++...|.- .+.+|+-+.+|.||||+.
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 4667788776677889999999999999999999999999999865 457788899999999987
No 248
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=91.73 E-value=0.45 Score=42.71 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=53.6
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHHhCCCCC-ceEEE--e-CC--eEeecccccccccccccCcEEEEEeeccce
Q 036691 73 TATVVEAMPYHTVQNIKTMIQVKEGIQSD-QFTLV--Y-DG--KLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~--~-~g--~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
..+ ..++..+||.+|++++.+..++|++ +-||- + .+ ..|++++.||.++++.++..|.+-.|..+|
T Consensus 141 ~~~-~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVT-RRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEE-EEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceE-EEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 355 7889999999999999999999987 67874 3 33 366665679999999999999988886665
No 249
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=91.58 E-value=0.74 Score=33.60 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=47.7
Q ss_pred cEEEEEecCC-cEEEEEEcCCCcHHHHHHHHHhHhCCCC--cceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 286 FQIFVKTWGG-KTITLDVQPYNTVQDVKVKLFDKLQTPL--HLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 286 m~i~v~~~~g-~~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
|.+.|+.+.. +.-++++ ...||.+|.+.+..+.++.. ..-.+.-||....+ .+.-+++||.|.++..+.||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 5566666532 1123666 66799999999987544332 34556667776543 35678999999998888776
No 250
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=91.18 E-value=0.59 Score=35.09 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=41.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG 332 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 332 (426)
.+|.|.|+.- -++.++|.++.+..+|+++|.++.++|++.-.|.|.-
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 3467777764 7999999999999999999999999999999998865
No 251
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.99 E-value=0.73 Score=34.48 Aligned_cols=64 Identities=14% Similarity=0.256 Sum_probs=51.4
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe---CCeEeeccccccccccccc
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY---DGKLLKEDTATMTSMNIKS 126 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~d~~~tL~~y~I~~ 126 (426)
+.++.|.....+... +.|+|..+..++-..|.++..+.|+.-.|.- .+..|+- +++|.||||+.
T Consensus 10 TvRLvVNy~~tQKtV-vRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdL-skSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTI-VRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDL-TKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEE-EEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCT-TSCHHHHTCSE
T ss_pred EEEEEEeecCcceeE-EEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccch-hcchhhhhhhh
Confidence 334444554445555 8999999999999999999999999988874 4568888 99999999986
No 252
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=89.93 E-value=0.58 Score=34.37 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=48.9
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL 140 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~ 140 (426)
|+|.|+..+..... ++++.+.||++|-++ .|+|++.-...-+|+.+.. +. +.+|+++.++.-..||.
T Consensus 1 M~v~Vkl~g~~~~~-~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~-d~------~l~GD~VeIv~~V~G~~ 67 (74)
T 2l32_A 1 MNVTVEVVGEETSE-VAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPE-DQ------SVEVDRVKVLRLIKGGL 67 (74)
T ss_dssp CEEEEECSSSSEEE-EECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCT-TS------SSCCCCEEECSSCSCC-
T ss_pred CEEEEEEeCcccee-EEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCH-HH------CCCCCEEEEEEeecccc
Confidence 77888886444455 899999999998764 7899999877789988866 43 34589998844444443
No 253
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=89.57 E-value=2.2 Score=31.80 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=49.5
Q ss_pred EEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeee
Q 036691 153 NLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEM 208 (426)
Q Consensus 153 ~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l 208 (426)
.-.++-..++..||+.++.+.|++.+.+.+...+..|+++++|-+-+++-...+.+
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQi 61 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQL 61 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEE
Confidence 34566678899999999999999999999999999999999999999988777665
No 254
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=89.50 E-value=1.1 Score=34.05 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=47.2
Q ss_pred CCcEEEEEecCCcEEEEEEcCC-CcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 284 SPFQIFVKTWGGKTITLDVQPY-NTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~-~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
..|+|.| +|+.+ ++... .||.+|.+.+ ++++....+..+|..+..+ ...+.-+++||.|.++..+.||
T Consensus 19 ~~M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQL---NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEE---TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEE---CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 3566765 55644 45665 8999998766 6777777788888887543 3556679999999998877665
No 255
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.25 E-value=0.96 Score=33.94 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=41.5
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK 110 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~ 110 (426)
..|.|.|+.- -++. +.|+++.+..+|.++|.++.++|++.-.|.|...
T Consensus 4 ~~~~VKV~~~--~tva-irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK--YTVV-MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS--SEEE-EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEE--EEEE-EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 4567777764 6999 9999999999999999999999999999988654
No 256
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=88.99 E-value=2.7 Score=43.07 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=53.4
Q ss_pred CCcEEEEEecC---CcEEEEEEcCCCcHHHHHHHHHhH--hCCC------CcceEEEE-c---Ce-ecCCC---------
Q 036691 284 SPFQIFVKTWG---GKTITLDVQPYNTVQDVKVKLFDK--LQTP------LHLQSIVF-A---GK-RLFEN--------- 338 (426)
Q Consensus 284 ~~m~i~v~~~~---g~~~~l~v~~~~tV~~lK~~i~~~--~gip------~~~q~L~~-~---gk-~L~d~--------- 338 (426)
.++.++|-..+ ...+.+.|-..|||.++|++|-+. .|.| +++..|-| . |+ .|.|.
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 34556665443 366889999999999999999875 3454 45566765 2 22 35442
Q ss_pred ----CccccCCCCCCCEEEEEeecC
Q 036691 339 ----HVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 339 ----~tL~~y~I~~~~ti~l~~~~~ 359 (426)
.||++|+|.+|+++.|+.+..
T Consensus 312 wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp EEECCBTTTTTCCTTCEEEEEEC--
T ss_pred eeEecchhhcCCCCCceEEEEeccc
Confidence 589999999999999988753
No 257
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=88.95 E-value=3.7 Score=29.45 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=48.3
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
.|+|.|....+ ... ++++...||.+|.+.+ ++++..-....+|..... +. -+++|+.|.++-...||
T Consensus 4 ~m~i~vNg~~~-~~~-~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~-~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKI-LESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVID-EE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEE-EEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCT-TS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-cee-EECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCC-cc-----cCCCCCEEEEEeccccC
Confidence 57888876332 344 7788889999998865 677777777789998876 33 67889999985544443
No 258
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=88.48 E-value=3.1 Score=42.72 Aligned_cols=64 Identities=20% Similarity=0.405 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE-c---Ce-ecCCC-------------CccccCCCCCC
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF-A---GK-RLFEN-------------HVLARYNIQKH 349 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~---gk-~L~d~-------------~tL~~y~I~~~ 349 (426)
..+.+.|-..|||.++|++|-+. .|.|. ++..|-| . |+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45888999999999999999865 35554 4556655 2 22 35552 58999999999
Q ss_pred CEEEEEeecC
Q 036691 350 STLHMVLAPS 359 (426)
Q Consensus 350 ~ti~l~~~~~ 359 (426)
+++.|+.+..
T Consensus 354 a~v~L~p~~~ 363 (644)
T 3hm6_X 354 ATVALVPCLT 363 (644)
T ss_dssp CEEEEEEC--
T ss_pred cEEEEEeccc
Confidence 9999887653
No 259
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=88.00 E-value=1.1 Score=32.64 Aligned_cols=62 Identities=5% Similarity=0.037 Sum_probs=47.5
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
+|+.+.+ +..||.+|-+ ..++++...-+..+|..+..+ ...++-+++||.|.++..+.||..
T Consensus 6 NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~~ 67 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGLE 67 (73)
T ss_dssp TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCCS
T ss_pred CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCcc
Confidence 5665554 5689998875 468888888888899887543 466778999999999888877753
No 260
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=87.64 E-value=5.4 Score=29.84 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=45.8
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhHhC-CC----------CcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDKLQ-TP----------LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~~g-ip----------~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
....+++....||.+|.+.+..+.. +. .....+.-+|+.... ++-+++||.|.++..+.||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 5677888888899999999988753 10 012466778887764 5678899999998888776
No 261
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=87.29 E-value=2.8 Score=38.99 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=57.7
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEE---cC--eecCCCCccccCCCCCCCEEEEEeec
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVF---AG--KRLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~---~g--k~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
+|.+.|..++| ++.+.+++..|+.++-..|+.+.|+..... -|.+ +| .-|+.++++.+.+++.+....+.+|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 46788899988 788999999999999999999999987653 4444 23 24678889998877777777676665
Q ss_pred C
Q 036691 359 S 359 (426)
Q Consensus 359 ~ 359 (426)
+
T Consensus 80 k 80 (294)
T 1ef1_A 80 K 80 (294)
T ss_dssp S
T ss_pred E
Confidence 3
No 262
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=85.72 E-value=5 Score=30.77 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=47.1
Q ss_pred CceeEEEEcCC------C-ceeEEEEEcCCCcHHHHHHHHHHHhC-C----------CCCceEEEeCCeEeecccccccc
Q 036691 60 SEMKLFVKIPT------N-QTATVVEAMPYHTVQNIKTMIQVKEG-I----------QSDQFTLVYDGKLLKEDTATMTS 121 (426)
Q Consensus 60 ~~m~i~Vk~~~------g-~~~~~~~v~~~~tV~~lK~~I~~~~g-i----------p~~~q~L~~~g~~L~d~~~tL~~ 121 (426)
++|+|.|+... | .... ++++...||.+|.+.+..... + ......+.-+|+.... +
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~-~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------~ 80 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEE-IELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------D 80 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEE-EEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------T
T ss_pred CcEEEEEEEhHHHHHHhCCCeEE-EECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC------C
Confidence 67888888752 4 3556 888888999999999887631 1 0123445566665532 5
Q ss_pred cccccCcEEEEEeeccce
Q 036691 122 MNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 122 y~I~~~s~i~l~~~~~~g 139 (426)
+-+++|+.|.+.-...||
T Consensus 81 ~~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 81 EELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CBCCTTCEEEEESCC---
T ss_pred CCCCCCCEEEEECCCCCC
Confidence 678899999885544443
No 263
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=85.43 E-value=4.5 Score=30.57 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=47.2
Q ss_pred cEEEEEec------CCcEEEEEEcCCCcHHHHHHHHHhHhCC------C-------CcceEEEEcCeecCCCCccccCCC
Q 036691 286 FQIFVKTW------GGKTITLDVQPYNTVQDVKVKLFDKLQT------P-------LHLQSIVFAGKRLFENHVLARYNI 346 (426)
Q Consensus 286 m~i~v~~~------~g~~~~l~v~~~~tV~~lK~~i~~~~gi------p-------~~~q~L~~~gk~L~d~~tL~~y~I 346 (426)
|.|.|+.+ .|...++++ +..||.+|.+.+..+..- . .....+.-+|.......- .++-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 44555544 343334664 567999999999987520 0 012456667776654322 34678
Q ss_pred CCCCEEEEEeecCCC
Q 036691 347 QKHSTLHMVLAPSSR 361 (426)
Q Consensus 347 ~~~~ti~l~~~~~gg 361 (426)
++|+.|.++..+.||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 999999999888876
No 264
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=85.41 E-value=3.6 Score=38.68 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=59.5
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEE--cC--eecCCCCccccCCCCCCCEEEEEee
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVF--AG--KRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~--~g--k~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
+.++.+.|..++| ++.+.+++..|+.++-..|+.+.|+...+. -|.| +| .-|+.++++.+.+++.+....+.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4567889999998 888999999999999999999999986543 3544 33 2478888999988777776666666
Q ss_pred cC
Q 036691 358 PS 359 (426)
Q Consensus 358 ~~ 359 (426)
.+
T Consensus 99 ~k 100 (314)
T 1h4r_A 99 AK 100 (314)
T ss_dssp ES
T ss_pred EE
Confidence 43
No 265
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=84.65 E-value=4.5 Score=32.60 Aligned_cols=58 Identities=17% Similarity=0.081 Sum_probs=38.9
Q ss_pred eeeccccCCCCCHHHHHHHHHHh------cC----ccceEEEe----cceecCCC--------------ccccccccCCC
Q 036691 368 IFIDPSISLSISISEVKEMAKVK------FQ----AAVKELLV----DQVALQDD--------------RTLADYGMDLS 419 (426)
Q Consensus 368 ~~~~~~~~~~~~v~~~k~~i~~~------~~----~~~q~l~~----~g~~L~d~--------------~~l~~~~i~~~ 419 (426)
..+.+.+=.-+||.++|++|-+. .| ++...|-+ .|..|.|. -||++|+|..|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 44566676778999999997644 21 33444544 23344442 47899999999
Q ss_pred CeEEEe
Q 036691 420 EKVVLV 425 (426)
Q Consensus 420 ~~l~l~ 425 (426)
+++-|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998764
No 266
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=84.10 E-value=2.8 Score=29.44 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+|+.+.+ +..||.+|.+.+ ++++....+..+|..+..+ ...+.-+++||.|.++..+.||
T Consensus 5 Ng~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 6666644 568999998876 5667777778888877543 3455678999999998877665
No 267
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=83.38 E-value=1.6 Score=30.95 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=44.5
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+|+.+ ++....||.+|.+.+ +++.....+..+|...... ...+.-+++||.|.++..+.||
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 55644 456778999998876 5677777778888877532 2345678999999998877665
No 268
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=82.92 E-value=4.9 Score=41.43 Aligned_cols=76 Identities=9% Similarity=0.162 Sum_probs=59.6
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcc-eEEEEcC-----eecCCCCccccCCCCCCCEEEEEe
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHL-QSIVFAG-----KRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~g-----k~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
+.++.+.|..++| ++.+.++++.|+.+|-..|+.+.|++... .-|.|-. ..|+.+.++.+.++..+....+.+
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 3567889999998 78899999999999999999999997654 3455532 457778889988887777777766
Q ss_pred ecC
Q 036691 357 APS 359 (426)
Q Consensus 357 ~~~ 359 (426)
|.+
T Consensus 81 Rvk 83 (575)
T 2i1j_A 81 RAK 83 (575)
T ss_dssp EES
T ss_pred EEE
Confidence 653
No 269
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=82.23 E-value=3.2 Score=30.42 Aligned_cols=60 Identities=3% Similarity=-0.034 Sum_probs=42.8
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhHhC-----CCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDKLQ-----TPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~~g-----ip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
...+++ .+..||.+|.+.+..+.. ++.....+..+|+.... +.-+++|+.|.++..+.||
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 345555 567799999999986532 23334567788887652 5578999999998877776
No 270
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=81.97 E-value=4.7 Score=30.46 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=46.0
Q ss_pred CCceeEEEEcCCCceeEEEEEcCC-CcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPY-HTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK 137 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~-~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~ 137 (426)
...|+|.|. |+. ++++.. .||.+|.+.+ ++++..-.+..+|+.+.. ....+.-+++|+.|.++-...
T Consensus 18 ~~~M~I~vN---Ge~---~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~--~~~~~~~L~dGD~Vei~~~V~ 85 (87)
T 1tyg_B 18 GGRHMLQLN---GKD---VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVHFVG 85 (87)
T ss_dssp ----CEEET---TEE---ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEEECC
T ss_pred CcceEEEEC---CEE---EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh--hhcCCcCCCCCCEEEEEcccc
Confidence 356776664 554 556776 8999998865 677777777788888754 345567799999999865444
Q ss_pred ce
Q 036691 138 EI 139 (426)
Q Consensus 138 ~g 139 (426)
||
T Consensus 86 GG 87 (87)
T 1tyg_B 86 GG 87 (87)
T ss_dssp C-
T ss_pred cC
Confidence 43
No 271
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=81.64 E-value=2.1 Score=31.59 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=49.7
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCC-CcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTP-LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip-~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~ 363 (426)
|.|.| +|+.+.+......||.+|-+. .|++ +...-+..+|..+..+ ...++-+++||.|.++..+.||.-
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~~ 71 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGKL 71 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSCC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCCc
Confidence 45544 566554321156899998764 4777 7777788899888544 466778899999999888877753
No 272
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=81.22 E-value=7 Score=40.04 Aligned_cols=66 Identities=14% Similarity=0.310 Sum_probs=46.7
Q ss_pred CceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCe-Eeeccc------------ccccccccc
Q 036691 71 NQTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGK-LLKEDT------------ATMTSMNIK 125 (426)
Q Consensus 71 g~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~d~~------------~tL~~y~I~ 125 (426)
...+. +.|-..|||.++|++|-+.. |+| +++..|-+ +|+ .|.|.+ .||++|+|.
T Consensus 246 ~~~i~-vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 324 (627)
T 3ig3_A 246 SAQVP-VKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVT 324 (627)
T ss_dssp -CEEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCC
T ss_pred CCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCC
Confidence 34566 88889999999999998763 554 45666765 233 354411 479999999
Q ss_pred cCcEEEEEeecc
Q 036691 126 SESIIHLVFCPK 137 (426)
Q Consensus 126 ~~s~i~l~~~~~ 137 (426)
+|+++.|+-+..
T Consensus 325 Dga~v~L~p~~~ 336 (627)
T 3ig3_A 325 DGSLVALVPKQV 336 (627)
T ss_dssp TTCEEEEEEC--
T ss_pred CCceEEEEeccc
Confidence 999999976643
No 273
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=80.70 E-value=1.5 Score=35.92 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=30.1
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE
Q 036691 298 ITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF 330 (426)
Q Consensus 298 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 330 (426)
.++.|..+.|+.+|+..|++..|+|+++|||-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 457899999999999999999999999999943
No 274
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=77.72 E-value=9.3 Score=39.20 Aligned_cols=64 Identities=17% Similarity=0.369 Sum_probs=46.3
Q ss_pred ceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCe-Eeeccc------------cccccccccc
Q 036691 72 QTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGK-LLKEDT------------ATMTSMNIKS 126 (426)
Q Consensus 72 ~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~d~~------------~tL~~y~I~~ 126 (426)
..+. +.|-..|||.++|++|-+.. |+| +++..|-+ .|+ .|.|.+ .||++|+|.+
T Consensus 274 ~~i~-VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 274 QGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred Ccee-eEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 3466 88889999999999998653 555 35566665 233 355522 4899999999
Q ss_pred CcEEEEEeec
Q 036691 127 ESIIHLVFCP 136 (426)
Q Consensus 127 ~s~i~l~~~~ 136 (426)
|+++.|+.+.
T Consensus 353 ga~v~L~p~~ 362 (644)
T 3hm6_X 353 GATVALVPCL 362 (644)
T ss_dssp TCEEEEEEC-
T ss_pred CcEEEEEecc
Confidence 9999986654
No 275
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=77.68 E-value=14 Score=29.22 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=48.8
Q ss_pred CCcEEEEEecC------C--cEEEEEEcC---CCcHHHHHHHHHhHhCCCCcceEEEEc-Ce------ecCCCC---cc-
Q 036691 284 SPFQIFVKTWG------G--KTITLDVQP---YNTVQDVKVKLFDKLQTPLHLQSIVFA-GK------RLFENH---VL- 341 (426)
Q Consensus 284 ~~m~i~v~~~~------g--~~~~l~v~~---~~tV~~lK~~i~~~~gip~~~q~L~~~-gk------~L~d~~---tL- 341 (426)
..|.|.|+.+. | +.+.+++.. ..||.+|.+.+.+++ |....+|+.. |+ .+-+++ -|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 45888888763 3 366788873 359999999998876 1112222211 11 121222 22
Q ss_pred -ccCCCCCCCEEEEEeecCCCc
Q 036691 342 -ARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 342 -~~y~I~~~~ti~l~~~~~gg~ 362 (426)
.++-+++||.|.++..+.||.
T Consensus 88 gldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCCC
Confidence 457899999999998888884
No 276
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=77.63 E-value=1.5 Score=35.88 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=28.3
Q ss_pred ccCCCCCHHHHHHHHHHHhCCCcccceEEec
Q 036691 2 KVKKSEPIKNLKAMIHVKEGISEDICDLFFA 32 (426)
Q Consensus 2 ~v~~~dtv~~~K~~i~~~~gi~~~~q~L~~~ 32 (426)
+|....|+.++|..|.+..|+|+++|||-..
T Consensus 61 rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 61 KVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp ECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred EEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 5778999999999999999999999999763
No 277
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=77.60 E-value=4 Score=29.54 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=43.2
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhHhCCCCcce--EEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ--SIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q--~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
...++++....||.+|.+.+.....- .... .+..+|+....+ .-+++||.|.++..+.||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 34566777778999999999876420 1223 677788887653 578899999888777665
No 278
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=73.96 E-value=26 Score=26.84 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=56.9
Q ss_pred CcEEEEEecCC---cEEEEEEcCCCcHHHHHHHHHhHhCCCCc--ceEEEEcC---eecCCCCccccCCCCCCCEEEEEe
Q 036691 285 PFQIFVKTWGG---KTITLDVQPYNTVQDVKVKLFDKLQTPLH--LQSIVFAG---KRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 285 ~m~i~v~~~~g---~~~~l~v~~~~tV~~lK~~i~~~~gip~~--~q~L~~~g---k~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
.+.|+|...+. ...+++|..+.-|+.+..++-++..++.+ +.-|-+-. ..|+-..||..|||+.++.++...
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 35688888654 56889999999999999999988887765 44555433 346788899999999999998764
No 279
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=73.73 E-value=14 Score=27.39 Aligned_cols=61 Identities=7% Similarity=0.044 Sum_probs=42.0
Q ss_pred EEEcCCCcHHHHHHHHHhHhC------C-----CCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 300 LDVQPYNTVQDVKVKLFDKLQ------T-----PLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 300 l~v~~~~tV~~lK~~i~~~~g------i-----p~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+++....||.+|.+.+..+.. + ......+..+|+..... .-.++-+++|+.|.++..+.||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 455566899999999987742 1 11345677788766532 2235568999999998877766
No 280
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=73.47 E-value=28 Score=26.49 Aligned_cols=73 Identities=7% Similarity=0.032 Sum_probs=45.2
Q ss_pred cEEEEEec------C-C-cEEEEEEc--CCCcHHHHHHHHHhHhCCC-Ccc------------eEEEEcCeecCCCCcc-
Q 036691 286 FQIFVKTW------G-G-KTITLDVQ--PYNTVQDVKVKLFDKLQTP-LHL------------QSIVFAGKRLFENHVL- 341 (426)
Q Consensus 286 m~i~v~~~------~-g-~~~~l~v~--~~~tV~~lK~~i~~~~gip-~~~------------q~L~~~gk~L~d~~tL- 341 (426)
|.|.|+.+ . | +..++++. +..||++|.+.+.++..-. ..- ..+.-||.-.+ -+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~ 78 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEG 78 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccC
Confidence 45666554 2 2 45667776 6789999999999886311 111 11233333211 12
Q ss_pred -ccCCCCCCCEEEEEeecCCC
Q 036691 342 -ARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 342 -~~y~I~~~~ti~l~~~~~gg 361 (426)
.++-+++|+.|.++..+.||
T Consensus 79 ~~d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 79 EKDYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp GGGCBCCTTCEEEEEECTTCC
T ss_pred CCCcCcCCCCEEEEECCCCCC
Confidence 35679999999998887776
No 281
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=73.42 E-value=7.8 Score=27.22 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=42.5
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
+|+. ++++...||.+|.+.+ ++++..-.+..+|+.... ....+.-+++|+.+.++-...||
T Consensus 6 Ng~~---~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQA---MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCE---ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH--HHHTTCCCCTTEEECEEESCCCC
T ss_pred CCEE---EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc--hhcCCcCCCCCCEEEEEeecccC
Confidence 4554 5567788999998875 567777777788887753 23445678999999885544443
No 282
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=71.45 E-value=14 Score=26.56 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=42.8
Q ss_pred eeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCC--CceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691 62 MKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQS--DQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE 138 (426)
Q Consensus 62 m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~--~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~ 138 (426)
|.|.|+....- .-. +++ ...||.+|.+.+....++.. ..-.+.-+|+...+ .+.-+++|++|.+.-...|
T Consensus 1 M~v~V~~fa~l~~~~-~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~-----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 1 MMVEVRFFGPIKEEN-FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN-----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEEEEECTTCCCCC-EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC-----TTCCCCTTCEEEEECCBCC
T ss_pred CEEEEEEEeecceeE-Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC-----CCcCCCCCCEEEEECCCCC
Confidence 45556554211 123 566 66799999999986543321 33445556665433 2456888999998655555
Q ss_pred e
Q 036691 139 I 139 (426)
Q Consensus 139 g 139 (426)
|
T Consensus 74 G 74 (74)
T 3rpf_C 74 G 74 (74)
T ss_dssp C
T ss_pred C
Confidence 4
No 283
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=70.73 E-value=16 Score=33.99 Aligned_cols=74 Identities=8% Similarity=-0.085 Sum_probs=54.3
Q ss_pred CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcc-eEEEEcC-----eecCCCCccccCCCCCCCEEEEEee
Q 036691 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHL-QSIVFAG-----KRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~g-----k~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
..+.+.|..++|...++.+++..|+.+|-..|+++.|+.... .-|.+.. .-|+.++++.+.......++++..+
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence 468899999999999999999999999999999999988665 3454432 3467777887765443445544443
No 284
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=68.84 E-value=23 Score=26.71 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=37.2
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcc-eEEEEcCe
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHL-QSIVFAGK 333 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~gk 333 (426)
|.|.+.. +|..+.+.++++.+.++|.+++++..+++..+ ..+.|...
T Consensus 7 vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 4555544 67899999999999999999999999988655 56666543
No 285
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=68.82 E-value=33 Score=25.53 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=44.1
Q ss_pred eeEEEEcC------CCceeEEEEEcCCCcHHHHHHHHHHHhC-C----CC--------CceEEEeCCeEeeccccccccc
Q 036691 62 MKLFVKIP------TNQTATVVEAMPYHTVQNIKTMIQVKEG-I----QS--------DQFTLVYDGKLLKEDTATMTSM 122 (426)
Q Consensus 62 m~i~Vk~~------~g~~~~~~~v~~~~tV~~lK~~I~~~~g-i----p~--------~~q~L~~~g~~L~d~~~tL~~y 122 (426)
|+|.|+.. .|.... +++ ...||.+|.+.+..+.. + .. ....+.-+|+...+ .. -.++
T Consensus 1 M~v~V~~fa~lr~~~g~~~~-~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~-~~-~~~~ 76 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKS-VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRF-SG-GLAT 76 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSE-EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGG-TT-GGGC
T ss_pred CEEEEEEeHHHHHHhCCCeE-Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccC-cC-CCCc
Confidence 45555553 344445 664 56799999999988752 0 01 12345556665542 11 1356
Q ss_pred ccccCcEEEEEeeccce
Q 036691 123 NIKSESIIHLVFCPKEI 139 (426)
Q Consensus 123 ~I~~~s~i~l~~~~~~g 139 (426)
-+++|++|.+.-...||
T Consensus 77 ~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 77 AIADGDSVTILPAVAGG 93 (93)
T ss_dssp BCCTTCEEEEEECCTTC
T ss_pred CCCCCCEEEEECCCCCC
Confidence 78999999986665554
No 286
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=67.77 E-value=25 Score=26.82 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=46.8
Q ss_pred CcEEEEEecC------C-cEEEEEEcCCCcHHHHHHHHHhHhC-CCC---------cce-------EEEEcCeecCCCCc
Q 036691 285 PFQIFVKTWG------G-KTITLDVQPYNTVQDVKVKLFDKLQ-TPL---------HLQ-------SIVFAGKRLFENHV 340 (426)
Q Consensus 285 ~m~i~v~~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-ip~---------~~q-------~L~~~gk~L~d~~t 340 (426)
.|.+.|+.+. | +..+++ ..||.+|.+.+..+.. +.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 3677777763 2 344444 6899999999988742 111 012 5677777653221
Q ss_pred cccCCCCCCCEEEEEeecCCC
Q 036691 341 LARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 341 L~~y~I~~~~ti~l~~~~~gg 361 (426)
-.++-+++||.|.++..+.||
T Consensus 79 ~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 79 GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp STTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCCEEEEECCCCCC
Confidence 234578999999998877765
No 287
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=67.12 E-value=12 Score=27.00 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=45.4
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL 140 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~ 140 (426)
+|+.. ++ ...||.+|-+. .|+++..--+..+|..+.. ....++-+++|+.|.++.-..||.
T Consensus 6 NG~~~---e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr--~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 6 NGEQR---EV-QSASVAALMTE----LDCTGGHFAVALNYDVVPR--GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TTEEE---CC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH--HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCEEE---Ec-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEccccCCc
Confidence 46654 45 66899998764 6888888888899998854 456677899999999966555553
No 288
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=65.15 E-value=2 Score=31.53 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=39.9
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691 300 LDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR 361 (426)
Q Consensus 300 l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg 361 (426)
+++.+..||.+|.+.+ ++|.....+..+|+....+ .-+++||.|.++..+.||
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 4556678999987765 4677777788899888654 678899999887666665
No 289
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=65.03 E-value=29 Score=26.12 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=38.8
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCc-eEEEeCCe
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQ-FTLVYDGK 110 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~~g~ 110 (426)
+.|+|.+.. .|..+. +.++++.+-.+|.+++.+..+++..+ ..+.|-..
T Consensus 5 ~~vkvK~~~-~gdi~~-~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 5 SQVRVKAYY-RGDIMI-THFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SCEEEEEES-SSCEEE-EEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CeEEEEEEe-CCeEEE-EECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 345666665 577888 99999999999999999999987655 66777654
No 290
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=64.10 E-value=6.9 Score=41.13 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=43.2
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc-CeecCCCCccccCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA-GKRLFENHVLARYN 345 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-gk~L~d~~tL~~y~ 345 (426)
+++..++.+.++.|+.+++..|++.+|||++.|.+++. |-.+.+....+.|-
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 45667789999999999999999999999999999885 45556666767653
No 291
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=62.02 E-value=17 Score=34.91 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=42.8
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCee--cCCCCccccCCC
Q 036691 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKR--LFENHVLARYNI 346 (426)
Q Consensus 294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~--L~d~~tL~~y~I 346 (426)
.-....+.+++..|+.++++.+++.++++++.|.|++.+.. +++......|.-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 44667889999999999999999999999999999998833 345555555543
No 292
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=61.97 E-value=24 Score=33.78 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=42.5
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC-eEeecccccccccc
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG-KLLKEDTATMTSMN 123 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g-~~L~d~~~tL~~y~ 123 (426)
.-.... +.+.+..|+.++++++++..|++++.|.|+|.+ ....++....+.|.
T Consensus 320 ~~~~~~-~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHK-IYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEE-EEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEE-EEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 344556 889999999999999999999999999999998 44445355566654
No 293
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=61.73 E-value=11 Score=27.70 Aligned_cols=61 Identities=8% Similarity=0.183 Sum_probs=44.8
Q ss_pred CCceeEEEEEc--CCCcHHHHHHHHHHHhCCC-CCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 70 TNQTATVVEAM--PYHTVQNIKTMIQVKEGIQ-SDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 70 ~g~~~~~~~v~--~~~tV~~lK~~I~~~~gip-~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
+|+. ++++ ...||.+|-+. .|++ +..--+..+|..+.- ....++-+++|+.|.++.-..||
T Consensus 6 NGe~---~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr--~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGKP---STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER--EAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTEE---EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT--THHHHCEECSSBCEEECCCCCCS
T ss_pred CCEE---EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEeeecCC
Confidence 4654 5566 67899998775 4777 777778899998854 45667789999999985555555
No 294
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=61.67 E-value=33 Score=31.90 Aligned_cols=74 Identities=11% Similarity=0.159 Sum_probs=54.6
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCC-ceEEEe--CCeE--eecccccccccccccCcEEEEE
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSD-QFTLVY--DGKL--LKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~--~g~~--L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
+..+.+.|..++| ++. +.++++.|+.++=..|.++.|+... ---|.| .|.. |+. ++++.+..++.+....+.
T Consensus 20 ~~~~~~~V~lldg-~~~-~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~-~~~i~~q~~~~~~~~~l~ 96 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EME-FNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKM-DKKVLDHDVSKEEPVTFH 96 (314)
T ss_dssp -CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCT-TSBGGGSSCCCSSSEEEE
T ss_pred CCeeEEEEEeCCc-eEE-EEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCC-ccCHHHcCCCCCCCEEEE
Confidence 4678889999999 888 9999999999999999999998643 344554 3432 555 778888766555555444
Q ss_pred ee
Q 036691 134 FC 135 (426)
Q Consensus 134 ~~ 135 (426)
+|
T Consensus 97 fr 98 (314)
T 1h4r_A 97 FL 98 (314)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 295
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=61.42 E-value=43 Score=26.35 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=45.6
Q ss_pred ceeEEEEcC------CC--ceeEEEEEcC---CCcHHHHHHHHHHHhCCCCCceEEEeC-Ce------Eeecccc---cc
Q 036691 61 EMKLFVKIP------TN--QTATVVEAMP---YHTVQNIKTMIQVKEGIQSDQFTLVYD-GK------LLKEDTA---TM 119 (426)
Q Consensus 61 ~m~i~Vk~~------~g--~~~~~~~v~~---~~tV~~lK~~I~~~~gip~~~q~L~~~-g~------~L~d~~~---tL 119 (426)
.|+|.|+.+ .| +.+. ++++. ..||.+|-..+.+.. |....+|+.. |+ .+-+ +. .+
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~-vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN-~~di~~l 86 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQ-VALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLIN-DADWELL 86 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEE-EEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEES-SSBHHHH
T ss_pred CcEEEEEEchHHHHHhCCceEEE-EEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEEC-Ceeeecc
Confidence 467777765 23 3566 78873 359999999998774 2222222111 11 1222 11 11
Q ss_pred --cccccccCcEEEEEeecccee
Q 036691 120 --TSMNIKSESIIHLVFCPKEIL 140 (426)
Q Consensus 120 --~~y~I~~~s~i~l~~~~~~g~ 140 (426)
.+|-+++|+.|.++-.+.||.
T Consensus 87 ~gldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 87 GELDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp CTTTCBCCSSEEEEEEECSCCCC
T ss_pred CCcCcCCCCCCEEEEeCCCCCCC
Confidence 357899999999977777773
No 296
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=61.27 E-value=25 Score=24.36 Aligned_cols=60 Identities=5% Similarity=0.135 Sum_probs=41.7
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
+|+.+ ++ ...||.+|.+.+ ++++..-.+..+|+.... ....+.-+++|+.|.++-...||
T Consensus 5 Ng~~~---~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPR---PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEE---CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEE---Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEeecccC
Confidence 56654 44 668999998876 566677677788887754 34456678999999985544443
No 297
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=61.06 E-value=29 Score=31.90 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=51.7
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCc-eEEEe---CCe--EeecccccccccccccCcEEEEEe
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQ-FTLVY---DGK--LLKEDTATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~---~g~--~L~d~~~tL~~y~I~~~s~i~l~~ 134 (426)
+|.+.|..++| ++. +.+++..|+.++=..|.++.|+...+ --|.| .|. -|+. ++++.+.+++.+....+.+
T Consensus 1 ~i~~~V~l~d~-~~~-~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~-~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 1 TISVRVTTMDA-ELE-FAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKL-NKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp CEEEEEEETTE-EEE-EEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCS-SSBGGGSCBCCCSSEEEEE
T ss_pred CEEEEEEECCc-eEE-EEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeeccc-ccCHHhhccCCCCCEEEEE
Confidence 36778888888 788 99999999999999999999986543 44554 233 2444 7778877665555555544
Q ss_pred e
Q 036691 135 C 135 (426)
Q Consensus 135 ~ 135 (426)
|
T Consensus 78 r 78 (294)
T 1ef1_A 78 R 78 (294)
T ss_dssp E
T ss_pred E
Confidence 4
No 298
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=60.21 E-value=48 Score=24.34 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=40.7
Q ss_pred ceeEEEEEcCCCcHHHHHHHHHHHhC-C-----CC-----CceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 72 QTATVVEAMPYHTVQNIKTMIQVKEG-I-----QS-----DQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 72 ~~~~~~~v~~~~tV~~lK~~I~~~~g-i-----p~-----~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
.... ++++...||.+|.+.+..+.. + .. ....+.-+|+.... ++-+++|+.|.+.-...||
T Consensus 18 ~~~~-~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~------~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVR-VDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL------GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEE-EECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT------TSBCCTTCEEEEECCCSCC
T ss_pred CeEE-EECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC------CcccCCCCEEEEECCCCCC
Confidence 4556 888888899999999987742 1 00 11355567765543 4568889999986555544
No 299
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=56.09 E-value=5.9 Score=31.27 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=45.4
Q ss_pred CcEEEEEecC------CcEEEEEEcC----CCcHHHHHHHHHhHhCCCCcceEEE-EcC--e------ecCCCCcc----
Q 036691 285 PFQIFVKTWG------GKTITLDVQP----YNTVQDVKVKLFDKLQTPLHLQSIV-FAG--K------RLFENHVL---- 341 (426)
Q Consensus 285 ~m~i~v~~~~------g~~~~l~v~~----~~tV~~lK~~i~~~~gip~~~q~L~-~~g--k------~L~d~~tL---- 341 (426)
+|.|.|+... |+...+++.. ..||.+|-..+.++. |...-.|+ -+| . .|-+++..
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 4666676653 3545566663 249999999998875 22222332 122 1 23233322
Q ss_pred -ccCCCCCCCEEEEEeecCCCc
Q 036691 342 -ARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 342 -~~y~I~~~~ti~l~~~~~gg~ 362 (426)
.+|-+++||.|.++..+.||-
T Consensus 82 gldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC-
T ss_pred CcccCCCCcCEEEEeCCCcccc
Confidence 357899999998888777773
No 300
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=52.18 E-value=36 Score=23.83 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=40.8
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
|.+.|...+|+. .++....|+.++-+.+....+ ....-...+|+..+-+ +-+++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 667787778876 466678999999887743221 1122234577766553 55667888888754
No 301
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=51.75 E-value=26 Score=26.91 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=41.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCc-----------ceEEEEcC-eecCC------CCccccCCCCCCCEEEEE
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKLQTPLH-----------LQSIVFAG-KRLFE------NHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-----------~q~L~~~g-k~L~d------~~tL~~y~I~~~~ti~l~ 355 (426)
...++++++.|..+|.+.+.+.-.+... ...|++.+ ..|+. +++|.+.|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999985443333 33444443 22322 477999999999999774
No 302
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=51.00 E-value=37 Score=27.35 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=39.0
Q ss_pred EEEcC----CCcHHHHHHHHHhHhCCCCcceEEEE--cCeec-----CC--CCccccCCCCCCCEEEEE
Q 036691 300 LDVQP----YNTVQDVKVKLFDKLQTPLHLQSIVF--AGKRL-----FE--NHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 300 l~v~~----~~tV~~lK~~i~~~~gip~~~q~L~~--~gk~L-----~d--~~tL~~y~I~~~~ti~l~ 355 (426)
+.|++ ..|..+|-+.+..++|.+. ...++- ..+.| +| +++|++.|+++|+.|.+.
T Consensus 10 l~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 10 IKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 45553 4599999999999999864 444442 23444 22 489999999999999664
No 303
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.30 E-value=47 Score=34.06 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=53.4
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCC-ceEEEeC---Ce--EeecccccccccccccCcEEEEE
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSD-QFTLVYD---GK--LLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~---g~--~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
..+.+.|..++| ++. +.++++.|+.+|=..|....|+... -.-|.|. |. -|+. +.++.+.+++.+....+.
T Consensus 3 k~i~v~V~llDg-t~e-~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~-~k~i~~q~~~~~~~~~L~ 79 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELE-FAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKL-YKKVMQQDVKKENPLQFK 79 (575)
T ss_dssp CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCT-TSBGGGSCBCCCSSEEEE
T ss_pred ceEEEEEEeCCC-eEE-EEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhc-cccHHHhcccCCCCeEEE
Confidence 457788888888 788 9999999999999999999998643 3556553 22 3444 777887766666655554
Q ss_pred ee
Q 036691 134 FC 135 (426)
Q Consensus 134 ~~ 135 (426)
+|
T Consensus 80 FR 81 (575)
T 2i1j_A 80 FR 81 (575)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 304
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=49.86 E-value=33 Score=24.08 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=37.9
Q ss_pred eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
|.+.|..++|+. .+++.+.|+.++-..+....+ ....-...+|+..+- ++-+++|+.|.++
T Consensus 1 m~i~i~~p~g~~---~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl------~~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI---KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL------SYVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE---EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT------TCBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE---EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC------CcCcCCCCEEEEE
Confidence 667787777875 567788999999888743321 111122356665543 3556677777763
No 305
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=47.83 E-value=41 Score=25.90 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=49.7
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE-------cCeecCCCCc----cccCCCCCCCEEE
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF-------AGKRLFENHV----LARYNIQKHSTLH 353 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~gk~L~d~~t----L~~y~I~~~~ti~ 353 (426)
+..|.|-..+|...++.|++.+|+.++-+.+..+.+...+.-.=++ --+.++|... ++.+.+..+..+.
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~ 88 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFV 88 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEE
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEE
Confidence 4456666789999999999999999999999999887765543222 2256777654 4445555555553
Q ss_pred E
Q 036691 354 M 354 (426)
Q Consensus 354 l 354 (426)
.
T Consensus 89 F 89 (100)
T 1wgr_A 89 F 89 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 306
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=47.58 E-value=34 Score=24.60 Aligned_cols=56 Identities=7% Similarity=0.117 Sum_probs=36.5
Q ss_pred EEEcCCCcHHHHHHHHHHHhC-----CCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 77 VEAMPYHTVQNIKTMIQVKEG-----IQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
++ ....||.++.+.+..... ++...-.+..+|+.... +.-+++|+.|.+.-...||
T Consensus 21 ~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~------~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 21 VA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF------DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT------TCBCCTTCEEEEECCCCCC
T ss_pred Ec-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC------CCCCCCCCEEEEeCCCCCC
Confidence 55 567899999998875421 22333456677776543 4568899999885544443
No 307
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=47.08 E-value=14 Score=38.70 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=42.3
Q ss_pred CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccc
Q 036691 70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSM 122 (426)
Q Consensus 70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y 122 (426)
..+... +.+.++.|+.+++..|++.+|+|++.|.+++.+..--++....+.|
T Consensus 320 ~~~~~~-~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHT-YPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCE-EECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccce-eecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 566677 9999999999999999999999999999998765433426566654
No 308
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=47.00 E-value=36 Score=26.24 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=34.3
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCc
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQ 102 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~ 102 (426)
+..-|.|-..+|...+ +.|++++|+.++=+.+.++.+...+.
T Consensus 8 ~k~vvkvf~~Dgssks-i~V~~~~Ta~dv~~~L~~K~~~~~~~ 49 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRS-VEVAAGATARHVCEMLVQRAHALSDE 49 (100)
T ss_dssp SCEEEEEEETTSCEEE-EEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred CCEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHHHcCCCCCC
Confidence 3455566667899999 99999999999999999998875443
No 309
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.94 E-value=79 Score=24.49 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=46.6
Q ss_pred EeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEE---CCee--ccCCCCcccccCCCcceeeec
Q 036691 143 FVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIY---EGKK--LEDSKTLAFYDMKDECLLEMF 209 (426)
Q Consensus 143 ~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~--L~d~~tL~~y~I~~~s~i~l~ 209 (426)
.|-..+...+++.+....|+.+++..+.++.+...+.+.|+- +|.. +.++..--.-.+.-+..|++.
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc 84 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVY 84 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEE
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEe
Confidence 344557889999999999999999999999998877888874 6654 344333333334444555544
No 310
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=44.81 E-value=28 Score=26.74 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=31.8
Q ss_pred CCceeEEEEcCC-------CceeEEEEEcCCCcHHHHHHHHHHHhCCC
Q 036691 59 LSEMKLFVKIPT-------NQTATVVEAMPYHTVQNIKTMIQVKEGIQ 99 (426)
Q Consensus 59 ~~~m~i~Vk~~~-------g~~~~~~~v~~~~tV~~lK~~I~~~~gip 99 (426)
.+.+.|.|...+ +..+. +-|+++.+-.+|..+|.++.+++
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~-i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFT-LLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEE-EEECTTCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEecCcccccccCcEEE-EEecCCCCHHHHHHHHHHHHcCC
Confidence 355667776542 55677 99999999999999999998865
No 311
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=44.55 E-value=36 Score=24.19 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=38.9
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHHhCCCCCce--EEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 73 TATVVEAMPYHTVQNIKTMIQVKEGIQSDQF--TLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q--~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
... ++++...||.++.+.+..... ..... .+..+|+.... +.-+++|+.|.+.-...||
T Consensus 17 ~~~-~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~------~~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QED-IVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK------SDFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEE-CCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT------TSEECTTCEEEEECSCCCC
T ss_pred EEE-EECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC------CCCcCCCCEEEEECCCCCC
Confidence 344 667778899999999877631 01222 56677877654 3578889999885444443
No 312
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=44.34 E-value=11 Score=32.40 Aligned_cols=83 Identities=16% Similarity=0.307 Sum_probs=55.2
Q ss_pred ceEEEeCCeEeecccccccccccccCcEEEEEeeccceeeeEeec-------------ccCcEEEEeccCCCc-------
Q 036691 102 QFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKA-------------ATGEIVNLEVKHSFA------- 161 (426)
Q Consensus 102 ~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~i~Vk~-------------~~gk~~~i~v~~~~t------- 161 (426)
+.++-|.|.+++. -+....|||+.+|.+.. +|+|.+.+.. .+...+.+-|+..|.
T Consensus 11 ~~~i~YDGsqi~s-lWA~~~fgi~gdSIV~F----rG~c~V~~e~mvDleDv~~~~~I~S~dmlhFIvEhFD~~dl~~~y 85 (190)
T 2ddz_A 11 ERRIDYDGSAIRS-HWAYRNFGILGDSLVVF----RGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLAS 85 (190)
T ss_dssp SSCCCBCSGGGST-THHHHHHCCCSSEEEEE----EEEEECCGGGCCBHHHHHTTCCCEEEEEEEEEEEECSCCCHHHHH
T ss_pred CCccCcChhhhhH-HHHHHhcCCCCCeEEEE----ECcccccHHHcccHHHHhcCCcccCccceEEEEeeCCCccHHHHH
Confidence 3456799999999 99999999999998876 5666665421 134455666666666
Q ss_pred ------HHHHHHHHhhhhCCCCCc--EEEEECCeecc
Q 036691 162 ------IRDVKAIVGSVVGVSAAD--HIMIYEGKKLE 190 (426)
Q Consensus 162 ------V~~lK~~I~~~~gip~~~--q~L~~~g~~L~ 190 (426)
|.-+|+.+.+. |++..+ =-|.++|+.|.
T Consensus 86 ~rQRLlv~i~kE~L~~~-g~~~~R~GDDLy~~~~KLS 121 (190)
T 2ddz_A 86 SLQKLLIARLVELLWNY-GIEASRRGDDIYVNGRKLS 121 (190)
T ss_dssp HHHHHHHHHHHHHHHTT-TCCEEEETTEEEETTEECE
T ss_pred HHHHHHHHHHHHHHHHc-CCeeeeccCeeeECCCEEE
Confidence 45566666643 765532 34666666663
No 313
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=42.89 E-value=79 Score=23.50 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=30.0
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCC
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQT 321 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi 321 (426)
.|.|.+-. ++..|.+.|.++-+..+|+.+|..+..+
T Consensus 12 ~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 12 TTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred ceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35554433 5689999999999999999999999988
No 314
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=42.84 E-value=54 Score=33.22 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=42.1
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC--cceEEEEc
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPL--HLQSIVFA 331 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~L~~~ 331 (426)
..++.+.|..++|....+.+++..|+.++-..|+.+.|+.. +..-|++.
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 45688999999999999999999999999999999999985 44556553
No 315
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=42.77 E-value=55 Score=25.05 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=46.9
Q ss_pred CcEEEEeecccccHHHHHHHHHHHhCCCCC-----------ceeEEecC-eec------CCCccccccCCCCCccccc--
Q 036691 222 EEIVRLEVEVLIVVRDVKEIVANIIDLSLG-----------NQDLFYAG-TKL------EACKTLASYGIKNNYVLDV-- 281 (426)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~-----------~q~L~~~g-~~L------~d~~tL~~y~I~~~~~l~l-- 281 (426)
+....++++++.|..+|-+.+.+...+... ...|+..+ ..| +=+++|.+.|+.+|..|.+
T Consensus 4 ~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 4 QLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp -CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred CCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 335678999999999999999885433322 34445443 112 1257799999999988887
Q ss_pred --CCCCcEEEEEe
Q 036691 282 --LPSPFQIFVKT 292 (426)
Q Consensus 282 --~~~~m~i~v~~ 292 (426)
++..+.+.|+.
T Consensus 84 ~~~p~~~~~rl~f 96 (98)
T 1y8x_B 84 VTTPQTVLFKLHF 96 (98)
T ss_dssp TTCSSCEEEEEEC
T ss_pred CCCcccEEEEEEe
Confidence 45556665553
No 316
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=42.03 E-value=86 Score=23.29 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=32.9
Q ss_pred CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe
Q 036691 60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY 107 (426)
Q Consensus 60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 107 (426)
+.|.|.+=. .+..+. +.|+++-+..+|+.+|.++..+ ++..+++
T Consensus 11 ~~~KVK~yy-~DDIiA-IrvP~di~~~~L~dKi~~RLk~--~~~~l~~ 54 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFA-LMLKGDTTYKELRSKIAPRIDT--DNFKLQT 54 (85)
T ss_dssp CCEEEEECB-TTCCEE-EEECSCCCHHHHHHHHHHHHTS--SCEEEEE
T ss_pred CceEEEEEe-cCcEEE-EECCCCCCHHHHHHHHHHHhcc--cceEEEE
Confidence 345555444 466888 9999999999999999999877 4444443
No 317
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=42.01 E-value=69 Score=25.86 Aligned_cols=46 Identities=7% Similarity=0.150 Sum_probs=36.8
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEE-eCCeEeeccccccccc
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLV-YDGKLLKEDTATMTSM 122 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g~~L~d~~~tL~~y 122 (426)
+-|+.+.||+++..-|..+.++++++-..+ |-+..+...+.++++.
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 678999999999999999999998887766 8777665546666553
No 318
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=42.00 E-value=1.1e+02 Score=23.31 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=50.3
Q ss_pred eeEEEEcCCC---ceeEEEEEcCCCcHHHHHHHHHHHhCCCCC--ceEEEeCCe---EeecccccccccccccCcEEEEE
Q 036691 62 MKLFVKIPTN---QTATVVEAMPYHTVQNIKTMIQVKEGIQSD--QFTLVYDGK---LLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 62 m~i~Vk~~~g---~~~~~~~v~~~~tV~~lK~~I~~~~gip~~--~q~L~~~g~---~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
..|+|...+. ...+ +.|..+.-|+.+..++-++..++-+ +.-|-..-+ .|.- ..||..|||+.++.+++.
T Consensus 20 L~V~V~d~~~~~~~~~~-lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt-~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEIT-LRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKT-HWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEEECTTSSCEEEEE-EEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCT-TSBHHHHTCCTTSCEEEE
T ss_pred EEEEEecCCcccCccEE-EEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhh-hhhhhhhceeeeeeeecc
Confidence 3556666443 4577 8898889999999999998877533 333433222 4566 789999999999998873
No 319
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=41.65 E-value=54 Score=23.89 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=40.4
Q ss_pred eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691 63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133 (426)
Q Consensus 63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~ 133 (426)
+|+|-+++|.. ++++.+.|+.++-..|....|-.. .--..+|+...- ++-+++|+++.+.
T Consensus 7 ~i~v~tP~G~~---~~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L------~~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDV---ISLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPI------DYKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCE---EEEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECT------TCBCCTTCBEEEE
T ss_pred eEEEECCCCCE---EEecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCC------CcccCCCCEEEEE
Confidence 57888888865 668899999999888876544111 112346665543 4567888888773
No 320
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=40.34 E-value=15 Score=28.87 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=44.2
Q ss_pred EEeecCCCcccCCceeeccccC----CCCCHHHHHHHHHHhcCccceEEEe-cc--e------ecCCCccc-----cccc
Q 036691 354 MVLAPSSRIIELPLIFIDPSIS----LSISISEVKEMAKVKFQAAVKELLV-DQ--V------ALQDDRTL-----ADYG 415 (426)
Q Consensus 354 l~~~~~gg~~~~~~~~~~~~~~----~~~~v~~~k~~i~~~~~~~~q~l~~-~g--~------~L~d~~~l-----~~~~ 415 (426)
+.++..||-....++..++++. ..+||.++-+.++++.+.....|+. +| . .|-+|+-. .+|-
T Consensus 7 v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~ 86 (110)
T 2k9x_A 7 ITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYV 86 (110)
T ss_dssp CEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCC
T ss_pred EEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccC
Confidence 3445556655444444445555 3359999999999997665555554 34 1 34455544 4688
Q ss_pred cCCCCeEEE
Q 036691 416 MDLSEKVVL 424 (426)
Q Consensus 416 i~~~~~l~l 424 (426)
++.+|.+.+
T Consensus 87 L~dgD~V~f 95 (110)
T 2k9x_A 87 LNDGDTVEF 95 (110)
T ss_dssp CCSSCEEEE
T ss_pred CCCcCEEEE
Confidence 999998754
No 321
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=40.04 E-value=1.2e+02 Score=22.83 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=36.7
Q ss_pred ceeEEEEEc--CCCcHHHHHHHHHHHhCCCCCc-------------eEEEeCCeEeecccccc--cccccccCcEEEEEe
Q 036691 72 QTATVVEAM--PYHTVQNIKTMIQVKEGIQSDQ-------------FTLVYDGKLLKEDTATM--TSMNIKSESIIHLVF 134 (426)
Q Consensus 72 ~~~~~~~v~--~~~tV~~lK~~I~~~~gip~~~-------------q~L~~~g~~L~d~~~tL--~~y~I~~~s~i~l~~ 134 (426)
+... ++++ ...||++|.+.+.++..-.... -.+.-+|+.- ..+ .++-+++|++|.+.-
T Consensus 20 ~~~~-~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~----~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 20 RVHK-IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDW----ELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp CEEE-EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEG----GGGTGGGCBCCTTCEEEEEE
T ss_pred cEEE-EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEc----cccCCCCcCcCCCCEEEEEC
Confidence 3455 6766 6789999999998875211000 0122233311 112 356789999998865
Q ss_pred eccce
Q 036691 135 CPKEI 139 (426)
Q Consensus 135 ~~~~g 139 (426)
...||
T Consensus 95 pv~GG 99 (99)
T 2qjl_A 95 TLHGG 99 (99)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 55554
No 322
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=39.19 E-value=33 Score=24.72 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=34.9
Q ss_pred EEeecccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCcccccCC
Q 036691 226 RLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLP 283 (426)
Q Consensus 226 ~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (426)
.+++.++.||.+|.+.+ +++.....+..+|+....+ +-+++|+.+.+++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 44666778999987765 5666666667788777554 5677899888754
No 323
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=36.95 E-value=1.1e+02 Score=22.56 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=48.9
Q ss_pred EEEEEEcCCCcHHHHHHHHHhH-hCCCC----cceEEEEcCee--cCCCCccccCCCCCCCEEEEEe
Q 036691 297 TITLDVQPYNTVQDVKVKLFDK-LQTPL----HLQSIVFAGKR--LFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~-~gip~----~~q~L~~~gk~--L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
..-+.|+..+|+.++-++++.. -|..+ .-.+...+|.. |..+-|+++-||++-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 3457899999999999999875 23221 25678899988 9999999999999999998865
No 324
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=36.93 E-value=42 Score=31.02 Aligned_cols=63 Identities=8% Similarity=-0.012 Sum_probs=46.7
Q ss_pred CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCc-eEEEeC---Ce--Eeecccccccccc
Q 036691 59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQ-FTLVYD---GK--LLKEDTATMTSMN 123 (426)
Q Consensus 59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~~---g~--~L~d~~~tL~~y~ 123 (426)
...+.+.|..++|.... +.|++..|+.++=..|.++.|+...+ .-|.|. |. -|+. ++.+.+..
T Consensus 15 ~~~~~~~V~lldgt~~~-~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~-~k~i~~q~ 83 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYE-CVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDS-AKEIKKQV 83 (296)
T ss_dssp --CCEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCT-TSBHHHHC
T ss_pred CceEEEEEEccCCCEEE-EEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhcc-chhHHHhc
Confidence 46788999999999999 99999999999999999999986433 455543 21 2444 56666553
No 325
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=35.76 E-value=1.1e+02 Score=22.28 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=38.9
Q ss_pred EEEcCCCcHHHHHHHHHHHhC------C-----CCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 77 VEAMPYHTVQNIKTMIQVKEG------I-----QSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~g------i-----p~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
++++...||.++.+.+..+.. + ......+..+|+.... . .-.+.-+++|+.|.+.-...||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~-~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITS-M-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGG-T-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccc-c-CCCCcCCCCCCEEEEeCCCCCC
Confidence 566667899999999887631 1 1133456667775542 1 2245678999999985554444
No 326
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=35.26 E-value=1.2e+02 Score=24.30 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=36.0
Q ss_pred CCcHHHHHHHHHHHhCCCCCceEEEe--CCeEeecc------cccccccccccCcEEEEEe
Q 036691 82 YHTVQNIKTMIQVKEGIQSDQFTLVY--DGKLLKED------TATMTSMNIKSESIIHLVF 134 (426)
Q Consensus 82 ~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~d~------~~tL~~y~I~~~s~i~l~~ 134 (426)
..|..+|-..++.+.|... +..+.- ..+.|-|+ .++|++.|+++|+.+.+.-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 3588898888988889763 433332 23444332 3789999999999988743
No 327
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=33.44 E-value=68 Score=25.04 Aligned_cols=32 Identities=19% Similarity=0.039 Sum_probs=26.3
Q ss_pred eeEEEcCCCcEEEEeecccccHHHHHHHHHHH
Q 036691 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVANI 245 (426)
Q Consensus 214 ~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~ 245 (426)
.|.+=.++|-.+.++++.++|++++|+.+.+.
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 34444688888899999999999999998765
No 328
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=31.64 E-value=1.7e+02 Score=22.17 Aligned_cols=45 Identities=11% Similarity=-0.161 Sum_probs=39.3
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV 329 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~ 329 (426)
...|.+..++++...++|.|+.|+.+--.++.++-|+.++....+
T Consensus 17 ~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 17 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred ccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 346788888998889999999999999999999999988877665
No 329
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=31.62 E-value=1.1e+02 Score=24.75 Aligned_cols=61 Identities=11% Similarity=0.256 Sum_probs=39.5
Q ss_pred cCcceeEEEcCCCcE-------EEEeecccccHHHHHHHHHHHhCCCCCceeEE-ecCeec-CCCccccc
Q 036691 210 PSSIQIFVRTPIEEI-------VRLEVEVLIVVRDVKEIVANIIDLSLGNQDLF-YAGTKL-EACKTLAS 270 (426)
Q Consensus 210 ~~~~~i~V~~~~g~~-------~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~-~~g~~L-~d~~tL~~ 270 (426)
|..++|.|+-..+.. ..+-|+.+.||..+...|+.+.++++++--.. |-|..+ ..+.++++
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 445666664332211 33568889999999999999999998775544 544334 44555544
No 330
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=31.55 E-value=1.4e+02 Score=21.65 Aligned_cols=42 Identities=12% Similarity=0.016 Sum_probs=36.7
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE
Q 036691 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV 329 (426)
Q Consensus 288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~ 329 (426)
|.+..++++...++|.|+.|+.+--.++-++-|+.++.-..+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 566778888888999999999999999999999988877665
No 331
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=30.03 E-value=94 Score=24.21 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=41.8
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHh--------CCCCcceEEEE-c--C--eecCC-CCccccCCCC
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKL--------QTPLHLQSIVF-A--G--KRLFE-NHVLARYNIQ 347 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~--------gip~~~q~L~~-~--g--k~L~d-~~tL~~y~I~ 347 (426)
...+.+=.++|-.++++++.+.|+.++|..+.++- --.++...+.. + | .++.| ++.|.+...-
T Consensus 19 ~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 19 RILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred cEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 34566667789999999999999999999998762 23344444433 1 2 23544 4677776543
No 332
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=29.70 E-value=24 Score=27.52 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=53.0
Q ss_pred CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc--ceEEEEcC---eecCCCCccccCCCCCCCEEEEE
Q 036691 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH--LQSIVFAG---KRLFENHVLARYNIQKHSTLHMV 355 (426)
Q Consensus 285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~--~q~L~~~g---k~L~d~~tL~~y~I~~~~ti~l~ 355 (426)
...|+|...+ ...+++|..+.-|+.+..++-++..++.+ +.-|-+-. ..|+-..||..|||+.++.++..
T Consensus 26 eL~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 26 ELSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CEECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 3456666654 77889999999999999999988877654 34444433 34678889999999999988664
No 333
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=28.64 E-value=1.1e+02 Score=28.13 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=48.3
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc-------CeecCCCCccc----cCCCCCCCEEEE
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA-------GKRLFENHVLA----RYNIQKHSTLHM 354 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-------gk~L~d~~tL~----~y~I~~~~ti~l 354 (426)
+.+.|-..+|.+.++.|++++|+++|-..+..+.+.+...-.-+|. -+.|+|...+. ......+..+.+
T Consensus 32 ~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 32 LVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 3455556688999999999999999999999988876555444443 26677766544 345555666544
No 334
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=28.30 E-value=69 Score=24.94 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=33.8
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccc
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSM 122 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y 122 (426)
+-|+.+.||+++..-|..+.++++++-..+|-+..+...+.++++.
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 6788999999999999999999888755556554454335566543
No 335
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=28.14 E-value=82 Score=32.79 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc-ceEEEE
Q 036691 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH-LQSIVF 330 (426)
Q Consensus 283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~ 330 (426)
..+|.+.|..++|....+.+++.+|+.++-..|+.+.|+... ..-|++
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 356889999999999999999999999999999999997654 334554
No 336
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.81 E-value=2.1e+02 Score=22.06 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=51.5
Q ss_pred EEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE---EcCe--ecCCCCccccCCCCCCCEEEEEeec
Q 036691 289 FVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV---FAGK--RLFENHVLARYNIQKHSTLHMVLAP 358 (426)
Q Consensus 289 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~gk--~L~d~~tL~~y~I~~~~ti~l~~~~ 358 (426)
.|-..+...+++.+..+.|+.+++..++++.+...+.+.|+ ++|. .|+++..--.-.+.-+..|++..+-
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 34344667788999999999999999999999888788873 4563 3456555444466777888887663
No 337
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=27.30 E-value=1.2e+02 Score=23.97 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=38.7
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccc--c-ccCcEEEEEe
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMN--I-KSESIIHLVF 134 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~--I-~~~s~i~l~~ 134 (426)
+-|+.+.||+++..-|..+..+++++-..+|-+..+...+.++++.- - ..+.-+++..
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 109 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAY 109 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEE
Confidence 67889999999999999999998887655565544543355665431 1 2244555543
No 338
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.24 E-value=1.5e+02 Score=22.06 Aligned_cols=43 Identities=12% Similarity=-0.076 Sum_probs=37.7
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE
Q 036691 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV 329 (426)
Q Consensus 287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~ 329 (426)
.|.+..++++...++|.|+.|+.+--.++.++-++.++....+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 3667788888889999999999999999999999998877665
No 339
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=27.17 E-value=92 Score=22.69 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.2
Q ss_pred EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE
Q 036691 64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV 106 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~ 106 (426)
|.+..++++... ++|.|+.|+.+--.+.-++.|+.++.-..+
T Consensus 4 irvhLPn~QrT~-V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTV-VNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEE-EECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEE-EEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 455566777777 999999999999999999999987775554
No 340
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=26.21 E-value=81 Score=24.55 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=36.5
Q ss_pred cCcceeEEEcCCCc------EEEEeecccccHHHHHHHHHHHhCCCCCceeEEe-cCeecCCCccccc
Q 036691 210 PSSIQIFVRTPIEE------IVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFY-AGTKLEACKTLAS 270 (426)
Q Consensus 210 ~~~~~i~V~~~~g~------~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tL~~ 270 (426)
|..++|.|+...+. ...+-|+.+.||+++...|+.+.++++++.-..| +|.....+.++++
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 34455666544322 1234567788999999999999999887643334 3332233444433
No 341
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=26.13 E-value=1.5e+02 Score=24.88 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=41.8
Q ss_pred EEEcCCCcHHHHHHHHHhHhC-CC---------CcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691 300 LDVQPYNTVQDVKVKLFDKLQ-TP---------LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI 362 (426)
Q Consensus 300 l~v~~~~tV~~lK~~i~~~~g-ip---------~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~ 362 (426)
+++.. .||.+|.+.+..+.. +. .....+..||....... -.++-+++||.|.++..+.||.
T Consensus 18 ~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 18 LELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEECSCCSEE
T ss_pred EEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEECcccccc
Confidence 45555 899999999987741 10 12345677887765432 2355799999999988888773
No 342
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=26.07 E-value=86 Score=23.99 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=30.3
Q ss_pred cEEEEEecC-------CcEEEEEEcCCCcHHHHHHHHHhHhCCC
Q 036691 286 FQIFVKTWG-------GKTITLDVQPYNTVQDVKVKLFDKLQTP 322 (426)
Q Consensus 286 m~i~v~~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip 322 (426)
+.|.|...+ +.++++-|.++-+..+|..+|.++.+++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 455555432 5689999999999999999999999876
No 343
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=24.14 E-value=1.3e+02 Score=23.72 Aligned_cols=57 Identities=16% Similarity=0.006 Sum_probs=39.5
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCcce-EEEEcCeecCCCCccccC---CCCCCCEEEEEe
Q 036691 300 LDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVFAGKRLFENHVLARY---NIQKHSTLHMVL 356 (426)
Q Consensus 300 l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~gk~L~d~~tL~~y---~I~~~~ti~l~~ 356 (426)
+-|..+.||+++...|..+.++++++- .|+-++.....+.++++. .=..+.-|+|..
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 568899999999999999999998874 444477655556665542 222344566654
No 344
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=24.00 E-value=1.6e+02 Score=22.30 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=43.2
Q ss_pred cEEEEEEcCCCcHHHHHHHHHhHh---CCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691 296 KTITLDVQPYNTVQDVKVKLFDKL---QTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS 359 (426)
Q Consensus 296 ~~~~l~v~~~~tV~~lK~~i~~~~---gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~ 359 (426)
..+.+++..+.||.++-+...-.. .|......+-.+|+... .++-+++||.|.+.-.+.
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrpl~ 87 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRPLL 87 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCCCC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEeccc
Confidence 456778889999999988875422 34455667777788776 555688999999876554
No 345
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=23.86 E-value=2.2e+02 Score=21.53 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=37.1
Q ss_pred ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE
Q 036691 61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV 106 (426)
Q Consensus 61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~ 106 (426)
...|.+..++++... ++|.|+.|+.+--.+.-++.|+.++.-..+
T Consensus 17 ~~~irvhLPNqQrT~-V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 17 KPIVRVFLPNKQRTV-VPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp SCEEEEEETTTEEEE-EECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred ccEEEEECCCCCeEE-EEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 346677777887777 999999999999999999999987775554
No 346
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=23.46 E-value=1.8e+02 Score=22.88 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=33.5
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccc
Q 036691 77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121 (426)
Q Consensus 77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~ 121 (426)
+-|+.+.||+++...|..+..+++++-..+|-+..+...+.++++
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 669999999999999999999988776666644344432555554
No 347
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.42 E-value=1.9e+02 Score=21.46 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=35.6
Q ss_pred eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE
Q 036691 63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV 106 (426)
Q Consensus 63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~ 106 (426)
.|.+..++++... ++|.|+.|+.+--.+.-++.|+.++.-..+
T Consensus 9 ~irvhLPn~QrT~-V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTV-VTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEE-EECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEE-EEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 4566677887777 999999999999999999999988776554
No 348
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.08 E-value=1.5e+02 Score=22.25 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhHhCCCCcceEEEE--cCeecCCCCccccCCCCCCCEEEEEee
Q 036691 307 TVQDVKVKLFDKLQTPLHLQSIVF--AGKRLFENHVLARYNIQKHSTLHMVLA 357 (426)
Q Consensus 307 tV~~lK~~i~~~~gip~~~q~L~~--~gk~L~d~~tL~~y~I~~~~ti~l~~~ 357 (426)
+.++|+.+.+++.+++...-+|+. .|.+++|+.-+... +..|+.|++.
T Consensus 29 sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 29 SLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILE 78 (91)
T ss_dssp SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEc
Confidence 799999999999999866666655 58888776544433 2566656664
No 349
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=23.00 E-value=1.7e+02 Score=26.20 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=46.6
Q ss_pred cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc-------CeecCCCCc----cccCCCCCCCEEEE
Q 036691 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA-------GKRLFENHV----LARYNIQKHSTLHM 354 (426)
Q Consensus 286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-------gk~L~d~~t----L~~y~I~~~~ti~l 354 (426)
+.|.|-..+|.+.++.|++..|..++-..+..+.+++.+...-++. -+.|+|... +..+.....+.+.+
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~v~~v~~~w~~~~~~~l~~ 114 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHENVVEVLSDWTRDTENKVLF 114 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchhHHHHHHhhccccccchhh
Confidence 4456666788999999999999999999999999987765433321 245555533 33334444555543
No 350
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=22.05 E-value=56 Score=20.17 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHHHh
Q 036691 6 SEPIKNLKAMIHVKE 20 (426)
Q Consensus 6 ~dtv~~~K~~i~~~~ 20 (426)
|+||.++|.-||..+
T Consensus 2 sntvkelknyiqele 16 (46)
T 3he4_B 2 SNTVKELKNYIQELE 16 (46)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 689999999988754
No 351
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=21.76 E-value=1.8e+02 Score=22.79 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=29.7
Q ss_pred EeecccccHHHHHHHHHHHhCCCCCceeEEe-cCeecCCCccccc
Q 036691 227 LEVEVLIVVRDVKEIVANIIDLSLGNQDLFY-AGTKLEACKTLAS 270 (426)
Q Consensus 227 l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tL~~ 270 (426)
+-|+.+.||.++...|+.+.++++++--..| ++.....+.++++
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 93 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQ 93 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHH
Confidence 4577788999999999999999887644334 3332244444443
No 352
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=20.80 E-value=1e+02 Score=23.98 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=52.0
Q ss_pred eeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCC--cEEEEEC--Cee-ccCCCCcccccCCCcceeeecc
Q 036691 141 SIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAA--DHIMIYE--GKK-LEDSKTLAFYDMKDECLLEMFP 210 (426)
Q Consensus 141 ~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~--~q~L~~~--g~~-L~d~~tL~~y~I~~~s~i~l~~ 210 (426)
.|+|...+ ...++.|....-|+-+..++-++..++.+ +..|-.- .+. +.-+-||..|+|+..+.++..|
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 44554444 77788888889999999999988876654 5555552 223 5788999999999999988764
No 353
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=20.79 E-value=2.6e+02 Score=20.70 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=0.0
Q ss_pred EEEEcCCCceeEEEEEc-CCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691 64 LFVKIPTNQTATVVEAM-PYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI 139 (426)
Q Consensus 64 i~Vk~~~g~~~~~~~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g 139 (426)
|+-|+...+.+.-+..+ .+-+|.+||..|..+.+.-..+--|...+.+=.. +..=...-|..++.+.+.-.+.+|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~e-eY~Dd~~lIprnssViVrRvP~~~ 84 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKE-EYTDDNALIPKNSSVIVRRIPIGG 84 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCC-EECSTTCEEETTCCEEEEEEECSS
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCC-ccCCCceEEecCCEEEEEeccCcc
No 354
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=20.44 E-value=2.6e+02 Score=20.55 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=48.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHh-C--C---CCcceEEEEcC--eecCCCCccccCCCCCCCEEEEEe
Q 036691 297 TITLDVQPYNTVQDVKVKLFDKL-Q--T---PLHLQSIVFAG--KRLFENHVLARYNIQKHSTLHMVL 356 (426)
Q Consensus 297 ~~~l~v~~~~tV~~lK~~i~~~~-g--i---p~~~q~L~~~g--k~L~d~~tL~~y~I~~~~ti~l~~ 356 (426)
..-+.|+..+|+.++-++++... | + |-.-.+..++| ..+..+.|+++-||.+-..|.+..
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 34478999999999999998752 3 3 22246778899 899999999999999999998765
Done!