Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>036693
MCEVISKRLIGLKFSYKRKLVLQDLHGRRVRVNYAADRNRGYGGGGFGGGGYGGGGYGGG
GGGYGGGGYGGGGGGYGSNYGGNSGVYGGGANTGSGSNAGYDGAGDSMGGNFGGYGSGSP
NFGVTGGSGSGNNAGYDGAADSMGGNLGGYGSGSSNFGVAGGAGGTDGGYDENNGFGDLS
GDTGGTDAGLDGNPESVLDGNPESGLDGNPEVGFGGRQ

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036693
        (218 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3...    75  4.1e-07   3


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 75 (31.5 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
 Identities = 13/16 (81%), Positives = 15/16 (93%)

Query:    23 QDLHGRRVRVNYAADR 38
             QDLHGRR+RVNYA +R
Sbjct:    97 QDLHGRRIRVNYATER 112

 Score = 43 (20.2 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query:   126 GGSGSGNNAGYDGAA 140
             GG G G N+ Y G A
Sbjct:   161 GGGGYGGNSSYGGNA 175

 Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query:   126 GGSGSGNNAGYDGAA 140
             G  G G N+ Y G A
Sbjct:   145 GAGGYGGNSSYSGNA 159

 Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query:   124 VTGGSGSGNNAGYDG 138
             V GG G G+N G  G
Sbjct:   189 VGGGGGYGSNFGGGG 203

 Score = 36 (17.7 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query:   199 DGNPESGLDGNPEVGFGG 216
             D   ESGL G+ +  FGG
Sbjct:   242 DHQTESGLGGDEQ--FGG 257

 Score = 36 (17.7 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query:   126 GGSGSGNNAGYDGAAD 141
             GG G G   G  GA+D
Sbjct:   117 GGRGFGGPGGGYGASD 132

 Score = 35 (17.4 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query:   129 GSGNNAGYD 137
             GS  NAG+D
Sbjct:   220 GSSTNAGFD 228

 Score = 34 (17.0 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query:   126 GGSGS--GNNAGYDG 138
             GG+ S  GN  GY G
Sbjct:   166 GGNSSYGGNAGGYGG 180

 Score = 31 (16.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query:   200 GNPESGLDGNPEVGF 214
             G+ E+G   N  VGF
Sbjct:   263 GDAENGNTENGPVGF 277


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.137   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      218        96   0.00091  102 3  11 23  0.47    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  448 (48 KB)
  Total size of DFA:  90 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.16u 0.11s 8.27t   Elapsed:  00:00:01
  Total cpu time:  8.16u 0.11s 8.27t   Elapsed:  00:00:01
  Start:  Fri May 10 02:04:30 2013   End:  Fri May 10 02:04:31 2013

Back to top