BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036693
(218 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147774036|emb|CAN71872.1| hypothetical protein VITISV_038162 [Vitis vinifera]
Length = 272
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 23 QDLHGRRVRVNYAADRNR 40
QDLHGRRVRVNYA DR R
Sbjct: 104 QDLHGRRVRVNYATDRAR 121
>gi|225457213|ref|XP_002284026.1| PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera]
Length = 277
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 23 QDLHGRRVRVNYAADRNR 40
QDLHGRRVRVNYA DR R
Sbjct: 104 QDLHGRRVRVNYATDRAR 121
>gi|356568734|ref|XP_003552565.1| PREDICTED: uncharacterized protein LOC100807155 [Glycine max]
Length = 244
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 23 QDLHGRRVRVNYAADRNR 40
QDLHGRR+RVNYA +R+R
Sbjct: 104 QDLHGRRIRVNYATERSR 121
>gi|255645506|gb|ACU23248.1| unknown [Glycine max]
Length = 243
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 23 QDLHGRRVRVNYAADRNR 40
QDLHGRR+RVNYA +R+R
Sbjct: 104 QDLHGRRIRVNYATERSR 121
>gi|255547195|ref|XP_002514655.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223546259|gb|EEF47761.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 267
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 23 QDLHGRRVRVNYAADRNR 40
QDLHGRRVRVNYA DR R
Sbjct: 104 QDLHGRRVRVNYANDRPR 121
>gi|449441097|ref|XP_004138320.1| PREDICTED: uncharacterized protein LOC101218446 [Cucumis sativus]
Length = 232
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 23 QDLHGRRVRVNYAADRNR 40
QDLHGRRVRVNYA DR R
Sbjct: 107 QDLHGRRVRVNYANDRAR 124
>gi|449477140|ref|XP_004154942.1| PREDICTED: uncharacterized LOC101218446 [Cucumis sativus]
Length = 287
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 23 QDLHGRRVRVNYAADRNR 40
QDLHGRRVRVNYA DR R
Sbjct: 107 QDLHGRRVRVNYANDRAR 124
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 23 QDLHGRRVRVNYAADRNRG 41
QDLHGRR+RVNYA ++ R
Sbjct: 104 QDLHGRRIRVNYATEKRRA 122
>gi|224121390|ref|XP_002318570.1| predicted protein [Populus trichocarpa]
gi|222859243|gb|EEE96790.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 23 QDLHGRRVRVNYAADR 38
QDLHGRRVRVNYA +R
Sbjct: 104 QDLHGRRVRVNYATER 119
>gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 23 QDLHGRRVRVNYAADRNR 40
QDLHGRR++VNYA ++ R
Sbjct: 104 QDLHGRRIKVNYATEKRR 121
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.309 0.144 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,644,055,052
Number of Sequences: 23463169
Number of extensions: 416002210
Number of successful extensions: 10221678
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 59779
Number of HSP's successfully gapped in prelim test: 42414
Number of HSP's that attempted gapping in prelim test: 3012505
Number of HSP's gapped (non-prelim): 2060211
length of query: 218
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 81
effective length of database: 9,144,741,214
effective search space: 740724038334
effective search space used: 740724038334
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 74 (33.1 bits)