Query 036693
Match_columns 218
No_of_seqs 149 out of 726
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 07:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fc8_A NCL protein; structure 98.0 5.9E-06 2E-10 57.3 4.3 32 11-42 65-96 (102)
2 2dnz_A Probable RNA-binding pr 97.8 1.4E-05 4.8E-10 54.6 3.8 32 11-42 58-89 (95)
3 1x4a_A Splicing factor, argini 97.8 1.8E-05 6.1E-10 55.9 4.2 32 10-41 71-102 (109)
4 2dgx_A KIAA0430 protein; RRM d 97.8 1.7E-05 6E-10 55.3 3.8 31 11-41 63-93 (96)
5 2lcw_A RNA-binding protein FUS 97.0 3.2E-06 1.1E-10 60.5 0.0 31 12-42 69-99 (116)
6 1u6f_A Tcubp1, RNA-binding pro 97.8 3.1E-05 1.1E-09 56.6 5.1 32 11-42 95-126 (139)
7 2dnq_A RNA-binding protein 4B; 97.7 2.6E-05 8.7E-10 53.3 4.0 32 11-42 53-84 (90)
8 2dgt_A RNA-binding protein 30; 97.7 3E-05 1E-09 53.2 4.1 32 10-41 54-85 (92)
9 2wbr_A GW182, gawky, LD47780P; 97.7 1.5E-05 5.3E-10 59.8 2.6 33 2-37 48-80 (89)
10 1x5t_A Splicing factor 3B subu 97.7 3.5E-05 1.2E-09 52.7 4.2 31 11-41 59-89 (96)
11 1h2v_Z 20 kDa nuclear CAP bind 97.7 2.5E-05 8.4E-10 58.5 3.6 31 11-41 92-122 (156)
12 1why_A Hypothetical protein ri 97.7 2.9E-05 9.9E-10 53.7 3.6 31 11-41 64-96 (97)
13 2dnr_A Synaptojanin-1; RRM dom 97.7 1.4E-05 4.9E-10 60.4 2.1 36 2-38 40-86 (91)
14 4fxv_A ELAV-like protein 1; RN 97.7 2.3E-05 7.9E-10 55.9 2.9 27 12-38 73-99 (99)
15 3md1_A Nuclear and cytoplasmic 97.7 3.2E-05 1.1E-09 51.4 3.4 30 11-40 54-83 (83)
16 2cqh_A IGF-II mRNA-binding pro 97.7 4.5E-05 1.6E-09 52.2 4.2 31 11-41 55-86 (93)
17 4a8x_A RNA-binding protein wit 97.6 3.6E-05 1.2E-09 51.5 3.5 31 11-41 58-88 (88)
18 2e5j_A Methenyltetrahydrofolat 97.6 2.9E-05 9.8E-10 53.9 3.1 30 11-40 67-96 (97)
19 2cpi_A CCR4-NOT transcription 97.6 5.2E-05 1.8E-09 54.3 4.4 31 11-41 74-104 (111)
20 2fc9_A NCL protein; structure 97.6 5.2E-05 1.8E-09 52.6 4.3 31 11-41 64-94 (101)
21 1fjc_A Nucleolin RBD2, protein 97.6 3.5E-05 1.2E-09 52.9 3.2 31 11-41 64-94 (96)
22 2cpd_A Apobec-1 stimulating pr 97.6 5.6E-05 1.9E-09 52.5 4.2 31 11-41 62-92 (99)
23 2do4_A Squamous cell carcinoma 97.6 4.2E-05 1.4E-09 53.0 3.6 31 11-41 69-99 (100)
24 3bs9_A Nucleolysin TIA-1 isofo 97.6 3.2E-05 1.1E-09 51.8 2.8 29 11-39 59-87 (87)
25 1x5s_A Cold-inducible RNA-bind 97.6 5.1E-05 1.8E-09 52.5 3.8 31 11-41 65-95 (102)
26 2dgu_A Heterogeneous nuclear r 97.6 0.00012 4.1E-09 51.3 5.7 31 11-41 56-86 (103)
27 2diu_A KIAA0430 protein; struc 97.6 3.1E-05 1.1E-09 59.1 2.8 32 9-40 55-86 (96)
28 1x4c_A Splicing factor, argini 97.6 7.8E-05 2.7E-09 53.0 4.7 31 11-41 61-96 (108)
29 2cpe_A RNA-binding protein EWS 97.6 7.5E-05 2.5E-09 52.8 4.4 31 11-41 76-106 (113)
30 2cq0_A Eukaryotic translation 97.5 6.1E-05 2.1E-09 52.4 3.8 31 11-41 68-98 (103)
31 1whw_A Hypothetical protein ri 97.5 7.8E-05 2.7E-09 51.4 4.1 31 11-41 61-91 (99)
32 2cpz_A CUG triplet repeat RNA- 97.5 4.9E-05 1.7E-09 54.1 3.0 31 11-41 78-108 (115)
33 2dnp_A RNA-binding protein 14; 97.5 8.7E-05 3E-09 50.7 4.1 31 11-41 54-84 (90)
34 2cqb_A Peptidyl-prolyl CIS-tra 97.5 7.9E-05 2.7E-09 51.6 3.9 31 11-41 65-95 (102)
35 2e44_A Insulin-like growth fac 97.5 5.9E-05 2E-09 51.7 3.2 29 11-39 65-93 (96)
36 1wi8_A EIF-4B, eukaryotic tran 97.5 9.6E-05 3.3E-09 51.7 4.2 31 11-42 68-98 (104)
37 1x5u_A Splicing factor 3B subu 97.5 9.6E-05 3.3E-09 51.4 4.2 31 11-41 68-98 (105)
38 2d9p_A Polyadenylate-binding p 97.5 9.4E-05 3.2E-09 51.5 4.0 31 11-41 66-96 (103)
39 3p5t_L Cleavage and polyadenyl 97.5 3.9E-05 1.3E-09 52.8 2.0 29 12-40 57-85 (90)
40 1fj7_A Nucleolin RBD1, protein 97.5 6.5E-05 2.2E-09 52.1 3.1 31 11-42 69-99 (101)
41 4f25_A Polyadenylate-binding p 97.5 7.2E-05 2.5E-09 54.0 3.4 30 12-41 57-86 (115)
42 1x5p_A Negative elongation fac 97.5 8.4E-05 2.9E-09 51.6 3.5 31 11-41 60-90 (97)
43 2e5i_A Heterogeneous nuclear r 97.5 6.3E-05 2.2E-09 57.6 3.1 28 12-39 74-103 (124)
44 2dgv_A HnRNP M, heterogeneous 97.4 5.8E-05 2E-09 51.2 2.5 31 11-41 59-89 (92)
45 2cqp_A RNA-binding protein 12; 97.4 0.0001 3.5E-09 50.7 3.4 30 11-40 68-97 (98)
46 1p27_B RNA-binding protein 8A; 97.4 8.5E-05 2.9E-09 51.8 2.9 30 11-40 76-105 (106)
47 2cpf_A RNA binding motif prote 97.4 0.00016 5.5E-09 49.7 4.3 31 11-41 61-91 (98)
48 2cqi_A Nucleolysin TIAR; RNA r 97.4 0.00015 5E-09 50.5 4.1 31 11-41 66-96 (103)
49 1wf1_A RNA-binding protein RAL 97.4 0.00013 4.5E-09 51.6 3.9 32 10-41 72-103 (110)
50 2cq3_A RNA-binding protein 9; 97.4 9.7E-05 3.3E-09 51.4 3.2 31 11-41 66-96 (103)
51 2dgo_A Cytotoxic granule-assoc 97.4 9.4E-05 3.2E-09 52.4 3.1 31 11-41 68-98 (115)
52 2dnm_A SRP46 splicing factor; 97.4 0.00017 6E-09 50.1 4.4 31 11-41 66-96 (103)
53 2cpx_A Hypothetical protein FL 97.4 0.00015 5.1E-09 51.2 4.0 31 11-41 78-108 (115)
54 1oo0_B CG8781-PA, drosophila Y 97.4 0.00011 3.7E-09 51.7 3.1 30 12-41 80-109 (110)
55 2cph_A RNA binding motif prote 97.3 0.00018 6.3E-09 50.0 4.0 31 11-41 69-100 (107)
56 2lxi_A RNA-binding protein 10; 97.3 9.9E-05 3.4E-09 51.6 2.7 30 12-41 56-86 (91)
57 2cpj_A Non-POU domain-containi 97.3 0.00021 7.2E-09 49.5 4.3 31 11-41 62-92 (99)
58 2x1f_A MRNA 3'-END-processing 97.3 0.00013 4.4E-09 50.3 3.2 30 11-40 55-84 (96)
59 2dgw_A Probable RNA-binding pr 97.3 0.00013 4.4E-09 49.7 3.1 30 11-41 61-90 (91)
60 2dng_A Eukaryotic translation 97.3 0.00018 6.1E-09 50.2 3.8 30 11-41 67-96 (103)
61 2dit_A HIV TAT specific factor 97.3 0.00012 4.3E-09 52.5 3.1 30 11-40 75-104 (112)
62 2la4_A Nuclear and cytoplasmic 97.3 9.7E-05 3.3E-09 51.2 2.3 28 11-38 74-101 (101)
63 2dnh_A Bruno-like 5, RNA bindi 97.3 0.00015 5.1E-09 50.4 3.1 31 11-41 67-100 (105)
64 2jvr_A Nucleolar protein 3; RN 97.3 0.00012 4.2E-09 54.4 2.9 30 11-40 78-107 (111)
65 3s8s_A Histone-lysine N-methyl 97.2 0.00016 5.5E-09 52.7 3.1 29 11-39 59-87 (110)
66 3ns6_A Eukaryotic translation 97.2 8.9E-05 3.1E-09 52.3 1.6 28 12-39 66-94 (100)
67 2jvo_A Nucleolar protein 3; nu 97.2 0.00018 6E-09 51.9 3.1 32 10-41 75-106 (108)
68 1x4g_A Nucleolysin TIAR; struc 97.2 0.00021 7.3E-09 50.4 3.5 31 11-41 72-102 (109)
69 2dgs_A DAZ-associated protein 97.2 0.00032 1.1E-08 48.4 4.3 29 12-41 64-92 (99)
70 2jrs_A RNA-binding protein 39; 97.2 0.00018 6.3E-09 51.7 3.1 30 11-40 79-108 (108)
71 4f02_A Polyadenylate-binding p 97.2 6.5E-05 2.2E-09 58.7 0.6 30 11-40 154-183 (213)
72 3zzy_A Polypyrimidine tract-bi 97.2 0.00016 5.5E-09 56.4 2.9 29 11-39 77-107 (130)
73 1nu4_A U1A RNA binding domain; 97.2 0.00024 8.3E-09 48.5 3.4 30 11-40 62-91 (97)
74 2ek1_A RNA-binding protein 12; 97.2 0.0002 6.7E-09 48.8 2.9 27 11-37 68-94 (95)
75 3ex7_B RNA-binding protein 8A; 97.2 0.00021 7.1E-09 51.4 3.2 31 11-41 75-105 (126)
76 2xnq_A Nuclear polyadenylated 97.2 0.00024 8.2E-09 50.0 3.3 30 10-39 67-96 (97)
77 2dhg_A TRNA selenocysteine ass 97.2 0.00017 5.9E-09 50.0 2.4 31 11-41 62-93 (104)
78 2hvz_A Splicing factor, argini 97.2 0.00019 6.5E-09 49.7 2.5 32 10-41 47-78 (101)
79 2pe8_A Splicing factor 45; RRM 97.2 0.00019 6.5E-09 52.5 2.6 26 12-37 68-93 (105)
80 2dgp_A Bruno-like 4, RNA bindi 97.1 0.00041 1.4E-08 48.3 4.1 31 11-41 66-99 (106)
81 1x4h_A RNA-binding protein 28; 97.1 0.00034 1.1E-08 48.9 3.6 31 11-41 68-104 (111)
82 2err_A Ataxin-2-binding protei 97.1 0.00028 9.7E-09 50.4 3.2 29 11-39 80-108 (109)
83 3mdf_A Peptidyl-prolyl CIS-tra 97.1 0.00029 1E-08 46.9 2.9 26 11-36 60-85 (85)
84 1ufw_A Synaptojanin 2; RNP dom 97.1 0.00021 7.2E-09 54.6 2.4 35 2-37 49-94 (95)
85 2do0_A HnRNP M, heterogeneous 97.1 0.00038 1.3E-08 49.0 3.6 31 11-41 67-97 (114)
86 1wg1_A KIAA1579 protein, homol 97.1 0.0003 1E-08 48.1 3.0 29 11-39 51-79 (88)
87 3egn_A RNA-binding protein 40; 97.1 0.0003 1E-08 51.9 3.1 31 11-41 103-133 (143)
88 2cqc_A Arginine/serine-rich sp 97.1 0.00027 9.3E-09 48.0 2.6 27 11-37 68-94 (95)
89 2kvi_A Nuclear polyadenylated 97.1 0.00021 7.3E-09 49.6 2.0 32 10-41 55-86 (96)
90 3v4m_A Splicing factor U2AF 65 97.1 0.00026 8.9E-09 51.6 2.5 28 11-38 70-97 (105)
91 2fy1_A RNA-binding motif prote 97.0 0.00036 1.2E-08 50.7 3.2 31 11-41 59-89 (116)
92 2e5h_A Zinc finger CCHC-type a 97.0 0.00027 9.3E-09 48.0 2.4 26 11-36 69-94 (94)
93 1p1t_A Cleavage stimulation fa 97.0 0.0003 1E-08 48.6 2.6 30 11-40 61-90 (104)
94 2div_A TRNA selenocysteine ass 97.0 0.00026 8.9E-09 48.7 2.2 31 11-41 63-97 (99)
95 2la6_A RNA-binding protein FUS 97.0 0.00032 1.1E-08 48.6 2.6 26 11-36 74-99 (99)
96 2a3j_A U1 small nuclear ribonu 97.0 0.00031 1.1E-08 53.2 2.7 30 11-40 83-112 (127)
97 3ucg_A Polyadenylate-binding p 97.0 0.00041 1.4E-08 46.5 3.0 29 11-40 59-87 (89)
98 2ywk_A Putative RNA-binding pr 97.0 0.00041 1.4E-08 47.2 2.8 27 11-37 68-94 (95)
99 1sjr_A Polypyrimidine tract-bi 97.0 0.00031 1.1E-08 56.9 2.5 28 12-39 96-125 (164)
100 2nlw_A Eukaryotic translation 97.0 0.00049 1.7E-08 48.7 3.2 28 12-39 73-101 (105)
101 2m2b_A RNA-binding protein 10; 97.0 0.00026 8.8E-09 52.0 1.8 30 12-41 78-111 (131)
102 2j76_E EIF-4B, EIF4B, eukaryot 96.9 0.00034 1.1E-08 49.0 2.1 28 11-39 72-99 (100)
103 3pgw_S U1-70K; protein-RNA com 96.9 0.0012 4.1E-08 59.1 6.1 30 12-41 156-185 (437)
104 2dis_A Unnamed protein product 96.9 0.00039 1.3E-08 48.6 2.3 29 12-40 64-94 (109)
105 2lkz_A RNA-binding protein 5; 96.9 0.00053 1.8E-08 49.4 2.9 26 12-37 65-94 (95)
106 2bz2_A Negative elongation fac 96.9 0.00059 2E-08 50.5 3.1 31 11-41 84-114 (121)
107 2e5g_A U6 snRNA-specific termi 96.9 0.00041 1.4E-08 47.8 2.0 30 11-41 56-85 (94)
108 1x4b_A Heterogeneous nuclear r 96.9 0.00074 2.5E-08 48.0 3.4 30 12-42 81-110 (116)
109 1x4d_A Matrin 3; structural ge 96.8 0.00043 1.5E-08 51.0 2.2 28 13-40 65-94 (102)
110 3beg_B Splicing factor, argini 96.8 0.00051 1.8E-08 49.7 2.4 31 11-41 62-97 (115)
111 1wez_A HnRNP H', FTP-3, hetero 96.8 0.00098 3.4E-08 47.7 3.6 29 12-41 67-95 (102)
112 3s6e_A RNA-binding protein 39; 96.8 0.00054 1.9E-08 51.4 2.3 27 11-37 66-92 (114)
113 3ue2_A Poly(U)-binding-splicin 96.8 0.0006 2E-08 51.3 2.5 27 11-37 82-108 (118)
114 3n9u_C Cleavage and polyadenyl 96.8 0.00047 1.6E-08 53.3 1.8 27 12-38 111-137 (156)
115 2dh8_A DAZ-associated protein 96.7 0.0011 3.6E-08 46.2 3.4 30 11-41 69-98 (105)
116 1whx_A Hypothetical protein ri 96.7 0.00073 2.5E-08 48.7 2.7 28 11-38 57-84 (111)
117 3ulh_A THO complex subunit 4; 96.7 0.00093 3.2E-08 46.5 2.9 26 11-36 81-106 (107)
118 2kt5_A RNA and export factor-b 96.7 0.00096 3.3E-08 48.0 3.1 30 11-40 87-116 (124)
119 3r27_A HnRNP L, heterogeneous 96.7 0.00077 2.6E-08 50.3 2.4 29 11-39 68-98 (100)
120 3lqv_A PRE-mRNA branch site pr 96.6 0.00069 2.4E-08 47.9 1.9 29 11-39 58-86 (115)
121 3tyt_A Heterogeneous nuclear r 96.6 0.00095 3.2E-08 53.1 2.8 27 12-38 54-80 (205)
122 1sjq_A Polypyrimidine tract-bi 96.6 0.00091 3.1E-08 50.2 2.5 30 12-41 64-95 (105)
123 2lea_A Serine/arginine-rich sp 96.6 0.00097 3.3E-08 49.9 2.5 31 11-41 100-130 (135)
124 2jwn_A Embryonic polyadenylate 96.6 0.0018 6.3E-08 46.3 3.8 29 12-41 90-118 (124)
125 2cqd_A RNA-binding region cont 96.6 0.0026 8.7E-08 45.2 4.4 28 11-39 70-97 (116)
126 2ki2_A SS-DNA binding protein 96.5 0.00066 2.3E-08 45.9 1.1 28 13-40 55-82 (90)
127 2ytc_A PRE-mRNA-splicing facto 96.5 0.0011 3.8E-08 44.2 2.0 26 11-36 59-85 (85)
128 1x5o_A RNA binding motif, sing 96.5 0.0018 6.3E-08 45.6 3.1 29 11-39 77-113 (114)
129 2cq4_A RNA binding motif prote 96.4 0.001 3.4E-08 47.1 1.7 30 11-41 78-107 (114)
130 2cq1_A PTB-like protein L; RRM 96.4 0.0021 7.3E-08 46.7 3.2 31 11-41 62-94 (101)
131 1jmt_A Splicing factor U2AF 35 96.3 0.0015 5.2E-08 47.3 2.2 24 12-35 80-103 (104)
132 1x4f_A Matrin 3; structural ge 96.3 0.0012 4E-08 49.9 1.6 30 12-41 74-105 (112)
133 1wex_A Hypothetical protein (r 96.3 0.0016 5.5E-08 47.5 2.1 31 11-41 62-94 (104)
134 3q2s_C Cleavage and polyadenyl 96.2 0.0014 5E-08 53.3 1.7 25 13-37 125-149 (229)
135 2cq2_A Hypothetical protein LO 96.2 0.0024 8.2E-08 48.6 2.7 30 11-40 74-108 (114)
136 2rs2_A Musashi-1, RNA-binding 96.2 0.0028 9.5E-08 45.4 2.9 29 12-41 79-107 (109)
137 1wel_A RNA-binding protein 12; 96.1 0.0012 4.3E-08 47.8 0.7 27 12-39 79-105 (124)
138 2krb_A Eukaryotic translation 96.1 0.0013 4.6E-08 44.0 0.7 22 12-33 59-81 (81)
139 2ad9_A Polypyrimidine tract-bi 96.1 0.0026 8.9E-08 48.4 2.4 31 11-41 78-110 (119)
140 1x4e_A RNA binding motif, sing 96.0 0.00096 3.3E-08 44.7 -0.3 26 11-36 58-83 (85)
141 2hgn_A Heterogeneous nuclear r 96.0 0.0016 5.4E-08 50.2 0.7 30 11-41 97-126 (139)
142 1b7f_A Protein (SXL-lethal pro 95.9 0.0056 1.9E-07 44.1 3.3 30 11-40 56-85 (168)
143 1fxl_A Paraneoplastic encephal 95.9 0.0057 2E-07 43.7 3.3 30 11-40 55-84 (167)
144 2mss_A Protein (musashi1); RNA 95.7 0.0035 1.2E-07 41.0 1.4 24 11-35 52-75 (75)
145 1uaw_A Mouse-musashi-1; RNP-ty 95.7 0.005 1.7E-07 40.1 2.1 24 11-35 53-76 (77)
146 2db1_A Heterogeneous nuclear r 95.7 0.0027 9.4E-08 46.1 0.9 26 12-38 73-98 (118)
147 3md3_A Nuclear and cytoplasmic 95.6 0.0088 3E-07 42.7 3.4 30 11-40 52-81 (166)
148 2dnn_A RNA-binding protein 12; 95.6 0.0041 1.4E-07 45.8 1.6 27 12-39 68-94 (109)
149 1fje_B Nucleolin RBD12, protei 95.4 0.0089 3E-07 43.8 2.9 29 11-40 65-93 (175)
150 3pgw_A U1-A; protein-RNA compl 95.4 0.01 3.5E-07 47.2 3.3 31 10-40 62-92 (282)
151 2lmi_A GRSF-1, G-rich sequence 95.3 0.0029 1E-07 44.8 0.0 27 12-39 67-93 (107)
152 1qm9_A Polypyrimidine tract-bi 95.3 0.01 3.4E-07 44.7 2.8 29 11-39 52-80 (198)
153 2hzc_A Splicing factor U2AF 65 95.2 0.0091 3.1E-07 39.7 2.2 23 11-34 64-86 (87)
154 1wg5_A Heterogeneous nuclear r 95.0 0.0093 3.2E-07 42.0 1.9 27 12-39 69-95 (104)
155 2adc_A Polypyrimidine tract-bi 95.0 0.014 4.7E-07 46.0 3.0 29 11-39 83-111 (229)
156 2hgl_A HNRPF protein, heteroge 95.0 0.0057 1.9E-07 46.8 0.8 27 12-39 100-126 (136)
157 2cpy_A RNA-binding protein 12; 95.0 0.0059 2E-07 43.7 0.7 27 12-39 69-95 (114)
158 2yh0_A Splicing factor U2AF 65 94.8 0.018 6.2E-07 42.7 3.0 29 11-40 62-90 (198)
159 2ghp_A U4/U6 snRNA-associated 94.8 0.017 5.7E-07 46.2 2.9 29 12-40 171-199 (292)
160 2cqg_A TDP-43, TAR DNA-binding 94.7 0.024 8.2E-07 39.1 3.2 28 12-41 69-96 (103)
161 3s7r_A Heterogeneous nuclear r 94.6 0.02 6.9E-07 38.3 2.6 23 12-35 65-87 (87)
162 2g4b_A Splicing factor U2AF 65 94.5 0.024 8.3E-07 41.1 3.0 28 12-40 63-90 (172)
163 2j8a_A Histone-lysine N-methyl 94.3 0.022 7.6E-07 46.0 2.7 23 13-35 69-93 (136)
164 2qfj_A FBP-interacting repress 94.2 0.024 8.1E-07 42.6 2.5 29 11-39 81-109 (216)
165 3smz_A Protein raver-1, ribonu 94.2 0.026 9E-07 44.9 2.8 30 11-40 148-177 (284)
166 2d9o_A DNAJ (HSP40) homolog, s 93.8 0.028 9.4E-07 41.2 2.2 28 12-41 66-93 (100)
167 2xs2_A Deleted in azoospermia- 93.1 0.035 1.2E-06 38.3 1.6 27 12-40 62-88 (102)
168 4f02_A Polyadenylate-binding p 93.1 0.062 2.1E-06 41.7 3.2 28 12-39 69-96 (213)
169 3sde_A Paraspeckle component 1 92.7 0.067 2.3E-06 42.9 3.0 28 11-38 69-96 (261)
170 1s79_A Lupus LA protein; RRM, 92.7 0.027 9.1E-07 40.6 0.6 25 12-37 64-88 (103)
171 1iqt_A AUF1, heterogeneous nuc 92.7 0.036 1.2E-06 35.9 1.2 23 12-35 53-75 (75)
172 2dha_A FLJ20171 protein; RRM d 92.3 0.024 8.2E-07 42.7 -0.1 26 12-38 80-105 (123)
173 2i2y_A Fusion protein consists 92.3 0.02 6.9E-07 42.3 -0.5 27 11-38 24-51 (150)
174 2hgm_A HNRPF protein, heteroge 91.4 0.044 1.5E-06 41.7 0.4 27 12-39 96-122 (126)
175 3smz_A Protein raver-1, ribonu 91.0 0.15 5.2E-06 40.5 3.2 28 11-38 68-95 (284)
176 1wf0_A TDP-43, TAR DNA-binding 90.7 0.35 1.2E-05 32.4 4.4 25 18-42 56-82 (88)
177 1l3k_A Heterogeneous nuclear r 89.0 0.23 8E-06 36.6 2.6 29 11-40 66-94 (196)
178 3nmr_A Cugbp ELAV-like family 88.9 0.24 8.3E-06 35.6 2.6 30 11-40 58-90 (175)
179 3d2w_A TAR DNA-binding protein 87.2 0.36 1.2E-05 33.3 2.5 25 17-41 61-87 (89)
180 3tht_A Alkylated DNA repair pr 86.6 0.36 1.2E-05 42.8 2.8 27 10-36 66-97 (345)
181 2l9w_A U4/U6 snRNA-associated- 85.8 0.36 1.2E-05 38.5 2.2 23 13-35 75-97 (117)
182 2dnl_A Cytoplasmic polyadenyla 84.7 0.5 1.7E-05 33.5 2.3 24 12-37 64-87 (114)
183 3sde_A Paraspeckle component 1 84.0 0.27 9.4E-06 39.4 0.7 29 11-39 148-180 (261)
184 2ghp_A U4/U6 snRNA-associated 83.2 0.66 2.3E-05 36.9 2.7 27 11-38 92-118 (292)
185 1wey_A Calcipressin 1; structu 77.8 1.5 5.2E-05 33.8 2.9 30 10-39 56-85 (104)
186 2cjk_A Nuclear polyadenylated 73.5 1.3 4.6E-05 31.6 1.5 26 12-39 57-82 (167)
187 2g0c_A ATP-dependent RNA helic 59.6 4.2 0.00014 27.4 1.7 24 13-36 52-75 (76)
188 1owx_A Lupus LA protein, SS-B, 31.0 30 0.001 26.5 2.6 23 13-35 69-93 (121)
189 3u1l_A PRE-mRNA-splicing facto 23.3 37 0.0013 28.5 2.0 15 11-25 190-204 (240)
No 1
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=5.9e-06 Score=57.33 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=29.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRGY 42 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~rg 42 (218)
++|++||++||+.+|++|+|+|.+|+|++++.
T Consensus 65 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2fc8_A 65 EDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 96 (102)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCCSSS
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEecCCCCCC
Confidence 44899999999999999999999999988763
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.4e-05 Score=54.57 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=28.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRGY 42 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~rg 42 (218)
+.|++||++||+.+|++|+|+|.+|++|..+.
T Consensus 58 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 89 (95)
T 2dnz_A 58 ECARRALEQLNGFELAGRPMRVGHVTERLDGG 89 (95)
T ss_dssp HHHHHHHHHHTTCCSSSSCCEEEESSCCCCCC
T ss_pred HHHHHHHHHhCCCeeCCcEEEEEEcccccCCC
Confidence 34899999999999999999999999988763
No 3
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.80 E-value=1.8e-05 Score=55.85 Aligned_cols=32 Identities=16% Similarity=-0.013 Sum_probs=28.6
Q ss_pred hchHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 10 IGLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 10 I~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.+.|++||++||+.+|++|+|+|++|++++++
T Consensus 71 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 71 PRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 34589999999999999999999999988765
No 4
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=1.7e-05 Score=55.29 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+++|++|+|+|++|+|++..
T Consensus 63 ~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 63 QDAIGAVNSLHRYKIGSKKILVSLATGASGP 93 (96)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCSSCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 4489999999999999999999999988765
No 5
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.98 E-value=3.2e-06 Score=60.51 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=28.3
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRGY 42 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~rg 42 (218)
.|++||++||+.+|++|+|+|.+|+|++.+.
T Consensus 69 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 69 SAKAAIDWFDGKEFSGNPIKVSFATRRADFN 99 (116)
Confidence 3799999999999999999999999988764
No 6
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.77 E-value=3.1e-05 Score=56.58 Aligned_cols=32 Identities=16% Similarity=0.062 Sum_probs=28.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRGY 42 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~rg 42 (218)
+.|++||++||+.+|.+|+|+|.+|+++..+.
T Consensus 95 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 95 SSAQQAIAGLNGFNILNKRLKVALAASGHQRP 126 (139)
T ss_dssp HHHHHHHHHTTTEECSSCEEEEEESSCCCCCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 34899999999999999999999999987763
No 7
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=2.6e-05 Score=53.34 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=28.7
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRGY 42 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~rg 42 (218)
+.|++||++||+.+|++|+|+|.+|++++.+.
T Consensus 53 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 84 (90)
T 2dnq_A 53 TAAEDAIRNLHHYKLHGVNINVEASKNKSKAS 84 (90)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEECSSCCCCCC
T ss_pred HHHHHHHHHhcCCccCCcEEEEEECCCCCCCC
Confidence 44899999999999999999999999887663
No 8
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.72 E-value=3e-05 Score=53.18 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=28.8
Q ss_pred hchHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 10 IGLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 10 I~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 54 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 54 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp HHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred HHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 34599999999999999999999999998765
No 9
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.70 E-value=1.5e-05 Score=59.80 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=29.0
Q ss_pred ceeecchhhchHHHHHHHhCCCccCCeeEEeccccc
Q 036693 2 CEVISKRLIGLKFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 2 cEViSaRiI~~AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
||+.+.+. |++||++||+.+|.+|+|||++|++
T Consensus 48 Vey~~~~e---A~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 48 CKYTTREE---ANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp EEESSHHH---HHHHHHHHTTEEETTEEEEEECCCH
T ss_pred EEECCHHH---HHHHHHHhcCCEECCcEEEEEECCH
Confidence 56666666 9999999999999999999999964
No 10
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.70 E-value=3.5e-05 Score=52.68 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=28.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+|++.+
T Consensus 59 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 59 DASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp HHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 3489999999999999999999999988765
No 11
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.69 E-value=2.5e-05 Score=58.51 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=27.8
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|++|+|++++
T Consensus 92 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 92 ADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp HHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence 3489999999999999999999999987655
No 12
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=2.9e-05 Score=53.73 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=28.4
Q ss_pred chHHHHHHHhCCCccC--CeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLH--GRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELD--GRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|+ +|+|+|++|+|++++
T Consensus 64 ~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~~ 96 (97)
T 1why_A 64 DAAQAACAKMRGFPLGGPDRRLRVDFAKSGPSS 96 (97)
T ss_dssp HHHHHHHHHHTTCBCSSSSCBCEEEECCCCCCC
T ss_pred HHHHHHHHHHCCCEeCCCCcEEEEEECCCCCCC
Confidence 4489999999999999 999999999998875
No 13
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=1.4e-05 Score=60.43 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=31.6
Q ss_pred ceeecchhhch-----------HHHHHHHhCCCccCCeeEEecccccC
Q 036693 2 CEVISKRLIGL-----------KFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 2 cEViSaRiI~~-----------AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
.+|++.|++.+ |++||+ ||+++|.+|+|+|+.++|.
T Consensus 40 G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 40 GEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp CCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred CCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 47888888776 688898 9999999999999999885
No 14
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.66 E-value=2.3e-05 Score=55.95 Aligned_cols=27 Identities=19% Similarity=0.125 Sum_probs=25.1
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
.|++||++||+++|++|+|+|++|+|.
T Consensus 73 ~A~~Ai~~lng~~~~gr~l~V~~AkPS 99 (99)
T 4fxv_A 73 DAERAINTLNGLRLQSKTIKVSYARPS 99 (99)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCBC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEeeCC
Confidence 389999999999999999999999883
No 15
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.66 E-value=3.2e-05 Score=51.42 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=27.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+.+|++|+|+|++|+||+.
T Consensus 54 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 83 (83)
T 3md1_A 54 DDAQNAMDSMQGQDLNGRPLRINWAAKLEH 83 (83)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred HHHHHHHHHhcCCeeCCcEEEEEecCcCCC
Confidence 348999999999999999999999998863
No 16
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=4.5e-05 Score=52.20 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=28.4
Q ss_pred chHHHHHHHhCC-CccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVL-QDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNG-qELDGRaIRVDeArPR~~r 41 (218)
++|++||++||+ .+|++|+|+|++|+|++.+
T Consensus 55 ~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 55 NWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp HHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred HHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 448999999999 9999999999999998776
No 17
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.64 E-value=3.6e-05 Score=51.48 Aligned_cols=31 Identities=3% Similarity=-0.076 Sum_probs=27.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+|.++|
T Consensus 58 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~R 88 (88)
T 4a8x_A 58 DEAEKALKHMDGGQIDGQEITATAVLAPWPR 88 (88)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECCCCCC
T ss_pred HHHHHHHHHcCCCeECCeEEEEEECCCCCCC
Confidence 3489999999999999999999999887654
No 18
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=2.9e-05 Score=53.92 Aligned_cols=30 Identities=17% Similarity=0.009 Sum_probs=27.4
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
++|++||++||+.+|++|+|+|++|+|++.
T Consensus 67 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 67 AAAQQAVSCLQGLRLGTDTLRVALARQQRD 96 (97)
T ss_dssp HHHHHHHHHHTTCCSSSSCCEEEECCCCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 348999999999999999999999999875
No 19
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.63 E-value=5.2e-05 Score=54.29 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=28.4
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|++|+||+..
T Consensus 74 ~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 74 EDALRAIQCVNNVVVDGRTLKASLGTTKYCS 104 (111)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEESCCCCSCS
T ss_pred HHHHHHHHHhCCCEECCEEEEEEeccccccc
Confidence 4489999999999999999999999999854
No 20
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=5.2e-05 Score=52.62 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+|++.+
T Consensus 64 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 64 EDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp HHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred HHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 4489999999999999999999999988765
No 21
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.61 E-value=3.5e-05 Score=52.86 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=28.4
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|++|+|+.++
T Consensus 64 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 64 ADAEKNLEEKQGAEIDGRSVSLYYTGEKGGT 94 (96)
T ss_dssp HHHHHHHHHTTEEEETTEEEEEEECSSSCCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 4499999999999999999999999998765
No 22
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=5.6e-05 Score=52.46 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+|++++
T Consensus 62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 62 EDAVEAMKALNGKVLDGSPIEVTLAKPVDKD 92 (99)
T ss_dssp HHHHHHHHHHSSEEETTEEEEEECCCCCCCC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 4489999999999999999999999998764
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=4.2e-05 Score=53.02 Aligned_cols=31 Identities=6% Similarity=-0.038 Sum_probs=28.4
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+|++++
T Consensus 69 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 69 SQASQAVMKMDGMTIKENIIKVAISNSGPSS 99 (100)
T ss_dssp HHHHHHHHHHTTEESSSCEEEEEECCCCSCC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 4489999999999999999999999998875
No 24
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.60 E-value=3.2e-05 Score=51.82 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=24.4
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||++||+.+|++|+|+|.+|+||+
T Consensus 59 ~~A~~A~~~l~g~~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 59 WDAENAIQQMGGQWLGGRQIRTNWATRKP 87 (87)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred HHHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence 34899999999999999999999999875
No 25
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=5.1e-05 Score=52.54 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=28.0
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++..
T Consensus 65 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 65 DDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp HHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 4489999999999999999999999988765
No 26
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.58 E-value=0.00012 Score=51.28 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=27.7
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+|+..+
T Consensus 56 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 56 DGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 4489999999999999999999999887654
No 27
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=3.1e-05 Score=59.15 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=28.8
Q ss_pred hhchHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 9 LIGLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 9 iI~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
.++.|++||++||+++|.+|+|||++|++++.
T Consensus 55 ~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 55 NQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp SHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 35569999999999999999999999998875
No 28
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=7.8e-05 Score=52.97 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCC-----eeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHG-----RRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDG-----RaIRVDeArPR~~r 41 (218)
++|++||++||+++|++ |+|+|++|+||+++
T Consensus 61 ~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 61 EDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp HHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred HHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 35899999999999999 99999999998765
No 29
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.56 E-value=7.5e-05 Score=52.77 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=28.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 76 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 76 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred HHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 3489999999999999999999999998775
No 30
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=6.1e-05 Score=52.42 Aligned_cols=31 Identities=6% Similarity=-0.132 Sum_probs=28.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+|++.+
T Consensus 68 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 68 EDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp HHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred HHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 3489999999999999999999999998765
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=7.8e-05 Score=51.37 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 61 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 61 EHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp HHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 3489999999999999999999999998765
No 32
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.52 E-value=4.9e-05 Score=54.05 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=28.0
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+|++.+
T Consensus 78 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 78 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 3489999999999999999999999988765
No 33
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.51 E-value=8.7e-05 Score=50.67 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 54 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 54 ADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 4489999999999999999999999988765
No 34
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=7.9e-05 Score=51.59 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+|++.+
T Consensus 65 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 65 EDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 3489999999999999999999999998765
No 35
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=5.9e-05 Score=51.73 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=26.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||++||+.+|++|+|+|++|+|+.
T Consensus 65 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 65 DQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 34899999999999999999999999984
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=9.6e-05 Score=51.68 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.7
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRGY 42 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~rg 42 (218)
+.|++|| +||+.+|++|+|+|++|+|++.+.
T Consensus 68 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 68 DSLLSAL-SLNEESLGNKRIRVDVADQAQDKD 98 (104)
T ss_dssp HHHHHHH-GGGTCEETTEECEEEECCCCCCCC
T ss_pred HHHHHHH-hcCCCEeCCcEEEEEEccCCCCCC
Confidence 3489999 999999999999999999988763
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.49 E-value=9.6e-05 Score=51.40 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 68 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 68 EDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp HHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 3489999999999999999999999988765
No 38
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=9.4e-05 Score=51.47 Aligned_cols=31 Identities=6% Similarity=-0.055 Sum_probs=28.3
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 66 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 66 EEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 4489999999999999999999999998765
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.48 E-value=3.9e-05 Score=52.77 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=22.9
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
.|++||++||+++|++|+|+|..|.|++.
T Consensus 57 ~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 57 SSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp HHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred HHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 37999999999999999999999998764
No 40
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.48 E-value=6.5e-05 Score=52.11 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=27.8
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRGY 42 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~rg 42 (218)
+.|++||+ ||+.+|++|+|+|.+|+||+.+.
T Consensus 69 ~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 69 EDLEKALE-LTGLKVFGNEIKLEKPKGRDGTR 99 (101)
T ss_dssp HHHHHHHH-GGGCCBTTBCCEEECCSCCCCSS
T ss_pred HHHHHHHh-cCCcEECCcEEEEEEcCCCCCCC
Confidence 44899998 99999999999999999988763
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.47 E-value=7.2e-05 Score=54.00 Aligned_cols=30 Identities=20% Similarity=0.029 Sum_probs=26.9
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.|++||++||+++|++|+|+|++|++|+.+
T Consensus 57 ~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~ 86 (115)
T 4f25_A 57 AAERAIEKMNGMLLNDRKVFVGRFKSRKER 86 (115)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESSCCCC-
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCcccc
Confidence 489999999999999999999999988754
No 42
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=8.4e-05 Score=51.56 Aligned_cols=31 Identities=13% Similarity=-0.026 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 60 ~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 60 ESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp HHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 4489999999999999999999999988765
No 43
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.46 E-value=6.3e-05 Score=57.64 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.8
Q ss_pred hHHHHHHHhCCCccCC--eeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHG--RRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDG--RaIRVDeArPR~ 39 (218)
.|++||++||+++|.+ |+|+|++|+|+.
T Consensus 74 ~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 74 CAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4999999999999998 699999999885
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.44 E-value=5.8e-05 Score=51.22 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=27.8
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+++...
T Consensus 59 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 59 EVAERACRMMNGMKLSGREIDVRIDRNASGP 89 (92)
T ss_dssp HHHHHHHHHHTTCCBTTBCCCCEECSCCSSC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCCCCCC
Confidence 3489999999999999999999999987764
No 45
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.0001 Score=50.71 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=26.5
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
++|++||++||+++|++|+|+|.+|++++.
T Consensus 68 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~s 97 (98)
T 2cqp_A 68 DEATAAVIDLNDRPIGSRKVKLVLGSGPSS 97 (98)
T ss_dssp HHHHHHHHHTTTCEETTEECEEEESSCSSC
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEEcCCCCC
Confidence 348999999999999999999999987653
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=8.5e-05 Score=51.76 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=27.4
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+.+|++|+|+|.+|+|++.
T Consensus 76 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 76 KEAQAAMEGLNGQDLMGQPISVDWCFVRGP 105 (106)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEESEESSC
T ss_pred HHHHHHHHHhcCCEECCcEEEEEeecCCCC
Confidence 348999999999999999999999998875
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.40 E-value=0.00016 Score=49.68 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=27.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+++...
T Consensus 61 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 61 EQAQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp HHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 3489999999999999999999999987654
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=0.00015 Score=50.50 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=27.8
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+++..+
T Consensus 66 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 66 RDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred HHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 3489999999999999999999999987655
No 49
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.40 E-value=0.00013 Score=51.61 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=27.2
Q ss_pred hchHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 10 IGLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 10 I~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.++|++||++||+.+|++|+|+|.+|++++..
T Consensus 72 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 72 ERHARAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp SHHHHHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 34599999999999999999999999855443
No 50
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=9.7e-05 Score=51.40 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++..
T Consensus 66 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 66 ADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 4489999999999999999999999988765
No 51
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.39 E-value=9.4e-05 Score=52.40 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=27.7
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 68 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 68 WDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp HHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 3489999999999999999999999987654
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.39 E-value=0.00017 Score=50.09 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=27.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++++
T Consensus 66 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 66 RDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp SHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred HHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 4489999999999999999999999987654
No 53
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.38 E-value=0.00015 Score=51.19 Aligned_cols=31 Identities=6% Similarity=0.190 Sum_probs=28.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 78 ~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 78 EIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp HHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 4489999999999999999999999988765
No 54
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.36 E-value=0.00011 Score=51.70 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=27.6
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.|++||++||+..|++|+|+|.+|+|++++
T Consensus 80 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 80 QALAAKEALNGAEIMGQTIQVDWCFVKGPK 109 (110)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESEESSCC
T ss_pred HHHHHHHHcCCCEECCcEEEEEEcccCCCC
Confidence 489999999999999999999999998765
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.00018 Score=49.96 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=28.1
Q ss_pred chHHHHHHHh-CCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKL-VLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAM-NGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++| |+.+|++|+|+|.+|++++..
T Consensus 69 ~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 69 QDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp HHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred HHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 4489999999 999999999999999998765
No 56
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.34 E-value=9.9e-05 Score=51.62 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=25.7
Q ss_pred hHHHHHHHhC-CCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLV-LQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMN-GqELDGRaIRVDeArPR~~r 41 (218)
.|++||++|+ ..+|++|+|+|++|+||++.
T Consensus 56 ~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 56 DATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp HHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred HHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 3799999884 57899999999999998764
No 57
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.00021 Score=49.50 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++..
T Consensus 62 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 62 TLAEIAKVELDNMPLRGKQLRVRFACHSASL 92 (99)
T ss_dssp HHHHHHHHHHTTCCBTTBCCEEEESSCCSCC
T ss_pred HHHHHHHHHhCCCEeCCceEEEEEcCCCCCC
Confidence 4489999999999999999999999998765
No 58
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.33 E-value=0.00013 Score=50.33 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+.+|++|+|+|.+|++++.
T Consensus 55 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 55 ESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 348999999999999999999999998763
No 59
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.32 E-value=0.00013 Score=49.72 Aligned_cols=30 Identities=10% Similarity=-0.061 Sum_probs=27.0
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||+ ||+.+|++|+|+|.+|++++..
T Consensus 61 ~~a~~A~~-~~g~~~~gr~i~v~~a~~~~~s 90 (91)
T 2dgw_A 61 EEVKQALK-CNREYMGGRYIEVFREKSGPSS 90 (91)
T ss_dssp HHHHHHHH-SCSEEETTEEEEEEEESSCCCC
T ss_pred HHHHHHHH-hCCceeCCcEEEEEECCcCCCC
Confidence 34899999 9999999999999999998764
No 60
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.32 E-value=0.00018 Score=50.21 Aligned_cols=30 Identities=20% Similarity=0.061 Sum_probs=27.0
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++|| +||+.+|++|+|+|.+|+|++.+
T Consensus 67 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 67 DSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp HHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred HHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 3489999 89999999999999999998765
No 61
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00012 Score=52.53 Aligned_cols=30 Identities=10% Similarity=-0.078 Sum_probs=27.3
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||++.|++|+|+|++|+|+..
T Consensus 75 ~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 75 EEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 448999999999999999999999998764
No 62
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=9.7e-05 Score=51.22 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=25.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
+.|++||++||+.+|++|+|+|++|+||
T Consensus 74 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 74 EQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp HHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 4489999999999999999999999986
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.29 E-value=0.00015 Score=50.42 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=27.9
Q ss_pred chHHHHHHHhCCCccCC---eeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHG---RRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDG---RaIRVDeArPR~~r 41 (218)
+.|++||++||+++|.+ |+|+|.+|++++++
T Consensus 67 ~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 67 TEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp HHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred HHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 34899999999999999 99999999988765
No 64
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.29 E-value=0.00012 Score=54.40 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=24.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
++|++||++||+++|++|+|+|.+|++++.
T Consensus 78 e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p~ 107 (111)
T 2jvr_A 78 EILVEALERLNNIEFRGSVITVERDDNPPP 107 (111)
T ss_dssp HHHHHHHHHTTTEEETTEEEEEEESCC---
T ss_pred HHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 348999999999999999999999976543
No 65
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.25 E-value=0.00016 Score=52.72 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=25.8
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||++||+++|++|+|+|++|++++
T Consensus 59 ~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 59 RGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 34899999999999999999999997654
No 66
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.25 E-value=8.9e-05 Score=52.33 Aligned_cols=28 Identities=11% Similarity=-0.068 Sum_probs=25.9
Q ss_pred hHHHHHHHhCCCccCC-eeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHG-RRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDG-RaIRVDeArPR~ 39 (218)
.|++||++||+++|++ |+|+|+.|+|+.
T Consensus 66 ~A~~Ai~~lng~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 66 DAKKIIKSFHGKRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp HHHHHHHHHTTCBSSSSCBCEEEESHHHH
T ss_pred HHHHHHHHhCCcccCCCeEEEEEECchhh
Confidence 4899999999999999 999999999864
No 67
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.24 E-value=0.00018 Score=51.90 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=27.5
Q ss_pred hchHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 10 IGLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 10 I~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 75 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 75 AESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 34599999999999999999999999988765
No 68
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.24 E-value=0.00021 Score=50.44 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=27.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++..
T Consensus 72 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 72 ESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred HHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 4489999999999999999999999988754
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00032 Score=48.45 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=26.5
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.|++||+ ||+.+|++|+|+|.+|+|++.+
T Consensus 64 ~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 64 SVDQAVN-MHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp HHHHHHH-HCCCBSSSCBCEEEECCCCCCC
T ss_pred HHHHHHH-hCCCEECCeEEEEEECCCCccc
Confidence 4899998 9999999999999999998765
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.22 E-value=0.00018 Score=51.66 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=27.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+.+|++|+|+|.+|+||.+
T Consensus 79 ~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d 108 (108)
T 2jrs_A 79 ECAKKALEQLNGFELAGRPMKVGHVTERTD 108 (108)
T ss_dssp HHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence 348999999999999999999999999863
No 71
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.21 E-value=6.5e-05 Score=58.67 Aligned_cols=30 Identities=20% Similarity=0.031 Sum_probs=26.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+.+|++|+|+|++|+||++
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 348999999999999999999999998754
No 72
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.21 E-value=0.00016 Score=56.35 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=26.3
Q ss_pred chHHHHHHHhCCCccCC--eeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHG--RRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDG--RaIRVDeArPR~ 39 (218)
++|++||++|||++|.+ |+|||++|+++.
T Consensus 77 ~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 77 VSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred HHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 34999999999999999 999999999864
No 73
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.20 E-value=0.00024 Score=48.54 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=27.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+.+|++|+|+|.+|++++.
T Consensus 62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 62 SSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 348999999999999999999999998764
No 74
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.20 E-value=0.0002 Score=48.83 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=23.9
Q ss_pred chHHHHHHHhCCCccCCeeEEeccccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
++|++||++||+.+|++|+|+|++|++
T Consensus 68 ~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 68 DEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred HHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 348999999999999999999999874
No 75
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.20 E-value=0.00021 Score=51.36 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=27.8
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|++|+++...
T Consensus 75 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 75 KEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 3489999999999999999999999987765
No 76
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.18 E-value=0.00024 Score=50.02 Aligned_cols=30 Identities=3% Similarity=-0.095 Sum_probs=26.9
Q ss_pred hchHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 10 IGLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 10 I~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
.+.|++||++||+.+|++|+|+|++|+++.
T Consensus 67 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 67 PQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp HHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 345899999999999999999999998875
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.00017 Score=50.02 Aligned_cols=31 Identities=13% Similarity=-0.066 Sum_probs=27.8
Q ss_pred chHHHHHHHhCCCc-cCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQD-LHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqE-LDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.. |++|+|+|.+|+++..+
T Consensus 62 ~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 62 LEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp HHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred HHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 34899999999999 99999999999887765
No 78
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.16 E-value=0.00019 Score=49.73 Aligned_cols=32 Identities=25% Similarity=0.122 Sum_probs=28.3
Q ss_pred hchHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 10 IGLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 10 I~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.+.|++||++||+.+|++|+|+|.+|++++++
T Consensus 47 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 47 PRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp HHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred HHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 34589999999999999999999999987754
No 79
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.15 E-value=0.00019 Score=52.52 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=24.4
Q ss_pred hHHHHHHHhCCCccCCeeEEeccccc
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
.|++||++||++.|+||+|+|++|++
T Consensus 68 ~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 68 SAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 38999999999999999999999976
No 80
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.15 E-value=0.00041 Score=48.28 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=27.7
Q ss_pred chHHHHHHHhCCCcc---CCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDL---HGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqEL---DGRaIRVDeArPR~~r 41 (218)
+.|++||++||++++ ++|+|+|.+|++++++
T Consensus 66 ~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 66 ESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp HHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred HHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 348999999999998 9999999999988765
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.00034 Score=48.91 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=27.9
Q ss_pred chHHHHHHHhC------CCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLV------LQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMN------GqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++|| +.+|++|+|+|.+|+|++.+
T Consensus 68 ~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 68 EAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp HHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred HHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 34899999999 99999999999999998765
No 82
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.13 E-value=0.00028 Score=50.42 Aligned_cols=29 Identities=28% Similarity=0.242 Sum_probs=26.5
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||++||+.+|++|+|+|.+|++|.
T Consensus 80 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 80 ADADRAREKLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCCCc
Confidence 44899999999999999999999999874
No 83
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.10 E-value=0.00029 Score=46.90 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.7
Q ss_pred chHHHHHHHhCCCccCCeeEEecccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAA 36 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeAr 36 (218)
+.|++||++||+.+|++|+|+|++|+
T Consensus 60 ~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 60 EDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34899999999999999999999985
No 84
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00021 Score=54.62 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=29.5
Q ss_pred ceeecchhhch-----------HHHHHHHhCCCccCCeeEEeccccc
Q 036693 2 CEVISKRLIGL-----------KFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 2 cEViSaRiI~~-----------AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
.||+..|++++ |.+||+ ||+++|.+|+|+|+.-+|
T Consensus 49 G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 49 GTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp SCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCCC
T ss_pred CCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccCC
Confidence 46778887776 789998 999999999999987554
No 85
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.00038 Score=49.03 Aligned_cols=31 Identities=13% Similarity=-0.120 Sum_probs=26.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|+++..+
T Consensus 67 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 67 IEAVQAISMFNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSCCCCC
T ss_pred HHHHHHHHHhCCCEeCCCEEEEEEcccCCCC
Confidence 4489999999999999999999998765443
No 86
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.09 E-value=0.0003 Score=48.07 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=25.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||++||+++|++|+|+|++|..+.
T Consensus 51 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 51 EQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 34899999999999999999999986543
No 87
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.09 E-value=0.0003 Score=51.90 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=26.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
..|++||++||+.+|++|+|+|.+|+++..+
T Consensus 103 ~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 103 KAAAKALKEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp HHHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence 3489999999999999999999999886554
No 88
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.08 E-value=0.00027 Score=47.96 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=24.6
Q ss_pred chHHHHHHHhCCCccCCeeEEeccccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
+.|++||++||+.+|++|+|+|.+|++
T Consensus 68 ~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 68 DDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 348999999999999999999999875
No 89
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00021 Score=49.56 Aligned_cols=32 Identities=6% Similarity=-0.078 Sum_probs=27.4
Q ss_pred hchHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 10 IGLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 10 I~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.+.|++||++||+.+|.+|+|+|.+|+++++.
T Consensus 55 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 55 PQSVRDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp HHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred HHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 34499999999999999999999999876654
No 90
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.05 E-value=0.00026 Score=51.64 Aligned_cols=28 Identities=14% Similarity=-0.028 Sum_probs=24.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
+.|++||++||++.|++|+|+|.++.+.
T Consensus 70 ~~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 70 FDCQKAMQGLTGRKFANRVVVTKYCDPD 97 (105)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred HHHHHHHHHhCCCEeCCCEEEEEEeCHH
Confidence 3489999999999999999999998653
No 91
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.05 E-value=0.00036 Score=50.69 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=27.7
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|++|+++...
T Consensus 59 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 59 ADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp HHHHHHHHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred HHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 4489999999999999999999999987654
No 92
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00027 Score=48.04 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.7
Q ss_pred chHHHHHHHhCCCccCCeeEEecccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAA 36 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeAr 36 (218)
+.|++||++||+.+|++|+|+|.+|+
T Consensus 69 ~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 69 DSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 34899999999999999999999985
No 93
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.0003 Score=48.63 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=27.0
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+.+|++|+|+|.+|+++..
T Consensus 61 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 61 ETALSAMRNLNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp HHHHHHHHHSSSBSCSSSCBEEEETTCTTH
T ss_pred HHHHHHHHHhCCCeeCCcEEEEEeCCCccc
Confidence 348999999999999999999999998764
No 94
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.03 E-value=0.00026 Score=48.71 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=27.2
Q ss_pred chHHHHHHHhCCCccCCee----EEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRR----VRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRa----IRVDeArPR~~r 41 (218)
+.|++||++||+++|++|+ |+|++|+|....
T Consensus 63 ~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~~ 97 (99)
T 2div_A 63 ATAEKCLHKINGKPLPGATPAKRFKLNYATYSGPS 97 (99)
T ss_dssp HHHHHHHHTTTTSEESSCSSCEECCEEETTCCSSS
T ss_pred HHHHHHHHHHcCCccCCCCcceeEEEeecCCCCCC
Confidence 3489999999999999999 999999887653
No 95
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.02 E-value=0.00032 Score=48.57 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=23.7
Q ss_pred chHHHHHHHhCCCccCCeeEEecccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAA 36 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeAr 36 (218)
+.|++||++||+.+|++|+|+|.+|+
T Consensus 74 ~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 74 PSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 34899999999999999999999985
No 96
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.01 E-value=0.00031 Score=53.18 Aligned_cols=30 Identities=3% Similarity=0.121 Sum_probs=27.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+.+|.+|+|+|++|+++..
T Consensus 83 ~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 83 ESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp HHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred HHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 448999999999999999999999998763
No 97
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.01 E-value=0.00041 Score=46.51 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=25.5
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++|| +||+.+|++|+|+|..|+|+.+
T Consensus 59 ~~a~~a~-~~~g~~~~g~~l~V~~a~~~~p 87 (89)
T 3ucg_A 59 ESVRTSL-ALDESLFRGRQIKVIPKRTNRP 87 (89)
T ss_dssp HHHHHHG-GGTTCEETTEECEEEETTTTSC
T ss_pred HHHHHHH-hcCCCEECCcEEEEEEccCCCC
Confidence 3489999 9999999999999999988654
No 98
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.98 E-value=0.00041 Score=47.25 Aligned_cols=27 Identities=19% Similarity=-0.038 Sum_probs=24.5
Q ss_pred chHHHHHHHhCCCccCCeeEEeccccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
+.|++||++||+.+|++|+|+|.+|+.
T Consensus 68 ~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 68 ESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 348999999999999999999999874
No 99
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.97 E-value=0.00031 Score=56.93 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=25.7
Q ss_pred hHHHHHHHhCCCccCC--eeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHG--RRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDG--RaIRVDeArPR~ 39 (218)
+|++||++||+++|.+ |+|+|++|+|+.
T Consensus 96 ~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 96 SAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4999999999999976 999999999875
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.97 E-value=0.00049 Score=48.72 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=25.6
Q ss_pred hHHHHHHHhCCCccCCe-eEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGR-RVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGR-aIRVDeArPR~ 39 (218)
.|++||++||+.+|++| +|+|++|++..
T Consensus 73 ~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 73 HAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp HHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred HHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 48999999999999999 99999998764
No 101
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.96 E-value=0.00026 Score=52.00 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=27.5
Q ss_pred hHHHHHHHhCCC----ccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQ----DLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGq----ELDGRaIRVDeArPR~~r 41 (218)
+|++||++||+. +|++|+|+|++|+|++++
T Consensus 78 ~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 78 EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 489999999999 999999999999987654
No 102
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.94 E-value=0.00034 Score=49.04 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=25.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++|| +||+.+|++|+|+|++|++|.
T Consensus 72 ~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 72 DSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp HHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred HHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 3489999 899999999999999999876
No 103
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.93 E-value=0.0012 Score=59.08 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=27.1
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.|++||++||+++|++++|+|++|+++...
T Consensus 156 ~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 156 DMHSAYKHADGKKIDGRRVLVDVERGRTVK 185 (437)
T ss_pred HHHHHHHHcCCCEECCEEEEEEEeCCCCCC
Confidence 379999999999999999999999987654
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.92 E-value=0.00039 Score=48.59 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.9
Q ss_pred hHHHHHHHhC--CCccCCeeEEecccccCCC
Q 036693 12 LKFSYKRKLV--LQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 12 ~AqKAIeAMN--GqELDGRaIRVDeArPR~~ 40 (218)
.|++||++|| ..+|++|+|+|++|+|++.
T Consensus 64 ~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 64 AAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp HHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred HHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 4899999996 6999999999999998765
No 105
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.89 E-value=0.00053 Score=49.35 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=23.6
Q ss_pred hHHHHHHHhCCCc----cCCeeEEeccccc
Q 036693 12 LKFSYKRKLVLQD----LHGRRVRVNYAAD 37 (218)
Q Consensus 12 ~AqKAIeAMNGqE----LDGRaIRVDeArP 37 (218)
+|++||++||+++ |+||+|+|++|++
T Consensus 65 ~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 65 DASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 3899999999985 9999999999985
No 106
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.88 E-value=0.00059 Score=50.48 Aligned_cols=31 Identities=13% Similarity=-0.026 Sum_probs=27.3
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|++|++++..
T Consensus 84 ~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 84 ESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 4489999999999999999999999987653
No 107
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.00041 Score=47.78 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=26.5
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||+ ||+.+|++|+|+|+.|.++...
T Consensus 56 ~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 56 GAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp HHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred HHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 45899999 9999999999999999887654
No 108
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.85 E-value=0.00074 Score=47.95 Aligned_cols=30 Identities=17% Similarity=0.036 Sum_probs=26.9
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRGY 42 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~rg 42 (218)
.|++||+. |+.+|++|+|+|.+|+||+.+.
T Consensus 81 ~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 81 EVDAAMAA-RPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp HHHHHHTS-CSEEETTEEEEEECCSSCCCCC
T ss_pred HHHHHHHh-CCcEECCEEEEEEECCCCccCC
Confidence 48999998 9999999999999999988763
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.00043 Score=51.02 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=24.1
Q ss_pred HHHHHHHhCCC--ccCCeeEEecccccCCC
Q 036693 13 KFSYKRKLVLQ--DLHGRRVRVNYAADRNR 40 (218)
Q Consensus 13 AqKAIeAMNGq--ELDGRaIRVDeArPR~~ 40 (218)
|++||++||+. +|+||+|+|++|+++++
T Consensus 65 A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 65 AQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp HHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred HHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 89999999864 59999999999997553
No 110
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.82 E-value=0.00051 Score=49.65 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=24.2
Q ss_pred chHHHHHHHhCCCccCCee-----EEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRR-----VRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRa-----IRVDeArPR~~r 41 (218)
++|++||++||+++|++|+ |+|.+++|+...
T Consensus 62 ~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~~~ 97 (115)
T 3beg_B 62 EDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 97 (115)
T ss_dssp HHHHHHHHHHTTCBCCCTTSCCCBCEEEECC----C
T ss_pred HHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCCCC
Confidence 4589999999999999999 899988877654
No 111
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.79 E-value=0.00098 Score=47.67 Aligned_cols=29 Identities=7% Similarity=-0.038 Sum_probs=25.1
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+|++|| +||+++|++|.|+|..|+++...
T Consensus 67 ~a~~Al-~~~~~~~~gr~i~V~~~~~~~~~ 95 (102)
T 1wez_A 67 DAVAAM-AKDKANMQHRYVELFLNSTAGTS 95 (102)
T ss_dssp HHHHHH-TTSSCCSSSSCCEEEEECCCCCC
T ss_pred HHHHHH-HhCCCeECCcEEEEEECCCCCCC
Confidence 489999 58999999999999998877654
No 112
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=96.78 E-value=0.00054 Score=51.39 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=24.5
Q ss_pred chHHHHHHHhCCCccCCeeEEeccccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
+.|++||++||++.|+||+|+|+++.+
T Consensus 66 e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 66 AAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 458999999999999999999999864
No 113
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.77 E-value=0.0006 Score=51.31 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=24.6
Q ss_pred chHHHHHHHhCCCccCCeeEEeccccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
+.|++||++||++.|+||+|+|+++.+
T Consensus 82 e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 82 SETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 458999999999999999999999865
No 114
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.75 E-value=0.00047 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=25.0
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
.|++||++||+.+|++|+|+|++|+|+
T Consensus 111 ~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 111 SVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred HHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 379999999999999999999999875
No 115
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.75 E-value=0.0011 Score=46.25 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=27.0
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||+. |+.+|++|+|+|.+|+|++.+
T Consensus 69 ~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 69 NCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp THHHHHHHH-CSEEETTEEEBCCCSCCSSCC
T ss_pred HHHHHHHHh-CCCeECCEEEEEEEccCCCCC
Confidence 348999999 999999999999999998765
No 116
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.00073 Score=48.71 Aligned_cols=28 Identities=14% Similarity=0.030 Sum_probs=25.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
+.|++||++||+.+|++|+|+|.+|+.+
T Consensus 57 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 57 LEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3489999999999999999999998754
No 117
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.71 E-value=0.00093 Score=46.52 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=23.9
Q ss_pred chHHHHHHHhCCCccCCeeEEecccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAA 36 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeAr 36 (218)
+.|++||++||+.+|++|+|+|++|+
T Consensus 81 ~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 81 ADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 44899999999999999999999986
No 118
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.71 E-value=0.00096 Score=48.04 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=26.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+.+|++|+|+|.+|.++..
T Consensus 87 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 87 ADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred HHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 348999999999999999999999987653
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.67 E-value=0.00077 Score=50.31 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=25.4
Q ss_pred chHHHHHHHhCCCc--cCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQD--LHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqE--LDGRaIRVDeArPR~ 39 (218)
+.|++||+.||+.+ |.||+|+|++|++|.
T Consensus 68 ~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 68 LGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 34899999999987 789999999998874
No 120
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.64 E-value=0.00069 Score=47.89 Aligned_cols=29 Identities=14% Similarity=-0.074 Sum_probs=26.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||++||+.+|++|+|+|.+|+|++
T Consensus 58 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 58 FDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp HHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 45899999999999999999999998754
No 121
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.63 E-value=0.00095 Score=53.13 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=24.5
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
.|++||++||+++|.+|+|+|.+|+.+
T Consensus 54 ~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 54 AVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred HHHHHHHHhCCCEECCceEEEEEccCC
Confidence 389999999999999999999998743
No 122
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.62 E-value=0.00091 Score=50.21 Aligned_cols=30 Identities=7% Similarity=0.138 Sum_probs=25.8
Q ss_pred hHHHHHHHhC--CCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLV--LQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMN--GqELDGRaIRVDeArPR~~r 41 (218)
.|++||++|+ +.+|++|+|+|++|++|+..
T Consensus 64 ~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 64 AANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred HHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 3899999886 48999999999999988653
No 123
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.59 E-value=0.00097 Score=49.87 Aligned_cols=31 Identities=19% Similarity=0.020 Sum_probs=27.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+.+|++|+|+|.+|++++.+
T Consensus 100 ~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 100 RDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp HHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 3489999999999999999999999987654
No 124
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.58 E-value=0.0018 Score=46.25 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=25.8
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.|++|| +||+.+|++|+|+|.+|+++..+
T Consensus 90 ~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 118 (124)
T 2jwn_A 90 SVDAAV-AMDETVFRGRTIKVLPKRTNMPG 118 (124)
T ss_dssp HHHHHH-TTTTCEETTEECEEEESSCCCSS
T ss_pred HHHHHH-hcCCCeECCeEEEEEECCCCCCC
Confidence 389999 89999999999999999887654
No 125
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.56 E-value=0.0026 Score=45.15 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=24.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||+.||+ +|++|+|+|.+|+++.
T Consensus 70 ~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 70 AAAERACKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp HHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred HHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence 348999999998 8999999999997643
No 126
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.53 E-value=0.00066 Score=45.92 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 13 KFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 13 AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
|++||++||+.+|++|+|+|+.|.++..
T Consensus 55 a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 55 VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 8999999999999999999999988754
No 127
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=44.21 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=23.5
Q ss_pred chHHHHHHHh-CCCccCCeeEEecccc
Q 036693 11 GLKFSYKRKL-VLQDLHGRRVRVNYAA 36 (218)
Q Consensus 11 ~~AqKAIeAM-NGqELDGRaIRVDeAr 36 (218)
+.|++||++| |+.+|++|+|+|++|+
T Consensus 59 ~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 59 QAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3489999999 9999999999999985
No 128
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.45 E-value=0.0018 Score=45.62 Aligned_cols=29 Identities=0% Similarity=-0.141 Sum_probs=25.3
Q ss_pred chHHHHHHHhCCCcc--------CCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDL--------HGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqEL--------DGRaIRVDeArPR~ 39 (218)
+.|++||++||+++| .+|+|+|.+|+|+.
T Consensus 77 ~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 77 EKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPSS 113 (114)
T ss_dssp HHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCSC
T ss_pred HHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCCC
Confidence 348999999999999 58889999999764
No 129
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.45 E-value=0.001 Score=47.15 Aligned_cols=30 Identities=17% Similarity=-0.048 Sum_probs=26.3
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
+.|++|| +||+.+|++|+|+|.+|++++.+
T Consensus 78 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 107 (114)
T 2cq4_A 78 QSVPLAI-GLTGQRLLGVPIIVQASQAEKNR 107 (114)
T ss_dssp GGHHHHH-HHTTEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHH-HcCCCEeCCeEEEEEecCCCccC
Confidence 3489999 99999999999999999887543
No 130
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.39 E-value=0.0021 Score=46.73 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=25.9
Q ss_pred chHHHHHHHh--CCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKL--VLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAM--NGqELDGRaIRVDeArPR~~r 41 (218)
+.|++||+.| +..+|++|+|+|++|++++-.
T Consensus 62 ~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 62 EAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp HHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred HHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 3489999987 478899999999999987643
No 131
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.35 E-value=0.0015 Score=47.34 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=22.5
Q ss_pred hHHHHHHHhCCCccCCeeEEeccc
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYA 35 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeA 35 (218)
.|++||++||++.|++|+|+|+++
T Consensus 80 ~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 80 DAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHHHCCCEECCEEEEEEEc
Confidence 489999999999999999999986
No 132
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.33 E-value=0.0012 Score=49.87 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=25.3
Q ss_pred hHHHHHHHhC--CCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLV--LQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMN--GqELDGRaIRVDeArPR~~r 41 (218)
.|++||++|| ..+|+||+|+|++|+++..-
T Consensus 74 ~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 74 DAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp HHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred HHHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 3899999886 46799999999999987654
No 133
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.29 E-value=0.0016 Score=47.47 Aligned_cols=31 Identities=10% Similarity=0.016 Sum_probs=25.7
Q ss_pred chHHHHHHHhCCC--ccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQ--DLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGq--ELDGRaIRVDeArPR~~r 41 (218)
+.|++||++||+. +|++|+|+|++|++++..
T Consensus 62 ~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 62 DSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred HHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 3489999999764 599999999999987654
No 134
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.22 E-value=0.0014 Score=53.30 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCccCCeeEEeccccc
Q 036693 13 KFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 13 AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
|++||++||+++|++|+|+|++|++
T Consensus 125 a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 125 SKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp HHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred HHHHHHHcCCCeECCEEeEEEECCC
Confidence 7999999999999999999998865
No 135
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.21 E-value=0.0024 Score=48.62 Aligned_cols=30 Identities=7% Similarity=-0.041 Sum_probs=26.4
Q ss_pred chHHHHHHHhCCCcc-----CCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDL-----HGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqEL-----DGRaIRVDeArPR~~ 40 (218)
++|++||++||+++| .+|+|.|++|++.+.
T Consensus 74 ~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 74 EESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp HHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred HHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 349999999999999 799999999987654
No 136
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.19 E-value=0.0028 Score=45.36 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=25.6
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.|++||+.|+ .+|++|+|+|.+|.||+.+
T Consensus 79 ~A~~Ai~~~~-~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 79 GVDKVLAQSR-HELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp HHHHHHHSSC-EEETTEEEEEEECCCCCCC
T ss_pred HHHHHHHHCC-CcCCCEEEEEEEccCCCCC
Confidence 3899999876 9999999999999998764
No 137
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.12 E-value=0.0012 Score=47.75 Aligned_cols=27 Identities=11% Similarity=-0.101 Sum_probs=24.3
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+|++||+ ||+.+|++|+|+|+.|+++.
T Consensus 79 ~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 79 DYKAALC-RHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp HHHHHHT-SCSBCSTTSCBEEEEECHHH
T ss_pred HHHHHHH-hCCCeECCcEEEEEECCHHH
Confidence 4899999 99999999999999998753
No 138
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.08 E-value=0.0013 Score=44.03 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=20.4
Q ss_pred hHHHHHHHhCCCccCCe-eEEec
Q 036693 12 LKFSYKRKLVLQDLHGR-RVRVN 33 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGR-aIRVD 33 (218)
.|++||++||+++|++| +|+|+
T Consensus 59 ~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 59 HAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHHHHHTTSSSCCCSSSSCCCCC
T ss_pred HHHHHHHHhcCcccCCceeEEeC
Confidence 48999999999999999 99985
No 139
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.07 E-value=0.0026 Score=48.42 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=26.3
Q ss_pred chHHHHHHHhC--CCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLV--LQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMN--GqELDGRaIRVDeArPR~~r 41 (218)
+.|++||++|+ +.+|.+|+|+|++|++++-.
T Consensus 78 e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 78 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp HHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred HHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 34899999998 47999999999999987643
No 140
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.01 E-value=0.00096 Score=44.67 Aligned_cols=26 Identities=4% Similarity=-0.047 Sum_probs=23.1
Q ss_pred chHHHHHHHhCCCccCCeeEEecccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAA 36 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeAr 36 (218)
+.|++||++||+++|++|.|+|+.++
T Consensus 58 ~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 58 SAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 34899999999999999999998764
No 141
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.97 E-value=0.0016 Score=50.24 Aligned_cols=30 Identities=3% Similarity=-0.031 Sum_probs=25.5
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
++|++|| +||+++|++|+|+|..|+++...
T Consensus 97 e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 97 EEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp HHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred HHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 3489999 89999999999999999887654
No 142
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.89 E-value=0.0056 Score=44.14 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=26.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||+.||+..|.+|+|+|..++|+..
T Consensus 56 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 56 MDSQRAIKVLNGITVRNKRLKVSYARPGGE 85 (168)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCSS
T ss_pred HHHHHHHHhcCCCEeCCcEEEEEecCCCcc
Confidence 348999999999999999999999987654
No 143
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.87 E-value=0.0057 Score=43.72 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=26.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+..|.+|+|+|..++|+..
T Consensus 55 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 55 KDAEKAINTLNGLRLQTKTIKVSYARPSSA 84 (167)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred HHHHHHHHHcCCCccCCceEEEEecCCCcc
Confidence 348999999999999999999999987653
No 144
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.69 E-value=0.0035 Score=40.96 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=21.2
Q ss_pred chHHHHHHHhCCCccCCeeEEeccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYA 35 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeA 35 (218)
+.|++||+ ||+.+|++|+|+|+.|
T Consensus 52 ~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 52 DIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHHH-CCCCEECCEEEEEEeC
Confidence 34788987 9999999999999876
No 145
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.66 E-value=0.005 Score=40.12 Aligned_cols=24 Identities=8% Similarity=-0.027 Sum_probs=22.0
Q ss_pred chHHHHHHHhCCCccCCeeEEeccc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYA 35 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeA 35 (218)
+.|++||+.|| .+|++|+|+|+.|
T Consensus 53 ~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 53 AGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp THHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHHhCC-CccCCEEEEEEec
Confidence 44899999999 9999999999987
No 146
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.65 E-value=0.0027 Score=46.12 Aligned_cols=26 Identities=8% Similarity=-0.167 Sum_probs=23.4
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
+|++||+ ||+++|++|+|+|.+|+++
T Consensus 73 ~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 73 DVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp HHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred HHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 4899999 9999999999999998764
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.0088 Score=42.71 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=26.5
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+..|.+|+|+|..+.++..
T Consensus 52 ~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 52 HDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred HHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 448999999999999999999999987654
No 148
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.58 E-value=0.0041 Score=45.78 Aligned_cols=27 Identities=26% Similarity=0.116 Sum_probs=23.8
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+|++|| +||+++|++|.|+|..|+++.
T Consensus 68 ~a~~Al-~~~~~~~~gr~i~V~~a~~~~ 94 (109)
T 2dnn_A 68 DTFEAL-KRNRMLMIQRYVEVSPATERQ 94 (109)
T ss_dssp HHHHHH-HTTTEEETTEEEEEEECCHHH
T ss_pred HHHHHH-hcCCCeECCeEEEEEECCccc
Confidence 389999 699999999999999998753
No 149
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.41 E-value=0.0089 Score=43.83 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=25.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++|| +||+.+|.+|+|+|..|+++..
T Consensus 65 ~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 65 EDLEKAL-ELTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp HHHHHHH-HGGGEEETTEEEEEECCCCSSC
T ss_pred HHHHHHH-hcCCCEeCCeEEEEecCCCccc
Confidence 3489999 5999999999999999987654
No 150
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=95.37 E-value=0.01 Score=47.18 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=26.9
Q ss_pred hchHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 10 IGLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 10 I~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
.+.|++||++||+.+|.+|+|+|.+|+++..
T Consensus 62 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 62 VSSATNALRSMQGFPFYDKPMRIQYAKTDSD 92 (282)
T ss_pred HHHHHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence 3458999999999999999999999977653
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.31 E-value=0.0029 Score=44.83 Aligned_cols=27 Identities=11% Similarity=-0.146 Sum_probs=24.2
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
.|++||+ ||++.|.+|.|+|..|+++.
T Consensus 67 ~a~~Al~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 67 DVQKALE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp HHHHHHT-TTTCCSSSSCCCCEECCHHH
T ss_pred HHHHHHH-hCcceeCCeEEEEEECCHHH
Confidence 4899999 99999999999999998753
No 152
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.26 E-value=0.01 Score=44.69 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=26.0
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||++||+..|.+|+|+|.+|+++.
T Consensus 52 ~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 52 NQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp HHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred HHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 44899999999999999999999998664
No 153
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=95.22 E-value=0.0091 Score=39.70 Aligned_cols=23 Identities=4% Similarity=-0.032 Sum_probs=20.6
Q ss_pred chHHHHHHHhCCCccCCeeEEecc
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNY 34 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDe 34 (218)
+.|++|| +||+.+|++|+|+|+.
T Consensus 64 ~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 64 DETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp HHHHHHG-GGTTCEETTEECEEEC
T ss_pred HHHHHHH-hcCCCEECCeEEEEeC
Confidence 3489999 9999999999999974
No 154
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.05 E-value=0.0093 Score=42.02 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=24.2
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+|++||+. |+++|.+|+|+|..|+++.
T Consensus 69 ~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 69 IAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp HHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred HHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 38999998 9999999999999998765
No 155
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.01 E-value=0.014 Score=45.96 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=26.0
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||++||+..|.+|+|+|.+|+++.
T Consensus 83 ~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 83 NQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 44899999999999999999999998763
No 156
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=94.99 E-value=0.0057 Score=46.83 Aligned_cols=27 Identities=7% Similarity=-0.141 Sum_probs=24.0
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+|++||+ ||+++|++|+|+|..|+++.
T Consensus 100 ~a~~Al~-~~g~~l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 100 DVKMALK-KDRESMGHRYIEVFKSHRTE 126 (136)
T ss_dssp HHHHHHT-TTEEESSSSEEEEEECCHHH
T ss_pred HHHHHHh-cCCCEECCEEEEEEECChHH
Confidence 3899999 99999999999999987653
No 157
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.95 E-value=0.0059 Score=43.70 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=23.9
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
.|++||+. |+.+|++|+|+|.+|+++.
T Consensus 69 ~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 69 DARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp HHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred HHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 47999987 9999999999999998764
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=94.78 E-value=0.018 Score=42.69 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=25.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++|| +||++.|.+|+|+|..++++..
T Consensus 62 ~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 62 DETTQAM-AFDGIIFQGQSLKIRRPHDYQP 90 (198)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEECCCCCCC
T ss_pred HHHHHHH-HhcCCEEcCceEEEeCCCCCCC
Confidence 3489999 8999999999999999887643
No 159
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.76 E-value=0.017 Score=46.20 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=25.4
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
.|++||++||+..|++|+|+|.+|.|+..
T Consensus 171 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 48999999999999999999999988754
No 160
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.67 E-value=0.024 Score=39.14 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=23.4
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.|++||++ +.+|++|+|+|.+|+++...
T Consensus 69 ~a~~A~~~--~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 69 TQVKVMSQ--RHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp HHHHHHHS--CEEETTEEEEEECCCTTCCC
T ss_pred HHHHHHHc--CCeeCCeEEEEEecCCCCcC
Confidence 37888884 67999999999999988654
No 161
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.58 E-value=0.02 Score=38.26 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=19.8
Q ss_pred hHHHHHHHhCCCccCCeeEEeccc
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYA 35 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeA 35 (218)
.|++||+ +++.+|++|+|+|.+|
T Consensus 65 ~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 65 SVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHHHHH-hCCCEECCEEEEEEeC
Confidence 3899996 4888999999999876
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.49 E-value=0.024 Score=41.08 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=24.4
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
.|++|| +||+..|++|+|+|..+++...
T Consensus 63 ~A~~A~-~~~~~~~~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 63 ETTQAM-AFDGIIFQGQSLKIRRPHDYQP 90 (172)
T ss_dssp HHHHHG-GGTTCEETTEECEEECCSSCCC
T ss_pred HHHHHH-HhCCcEecCceeeecCCcccCC
Confidence 489999 8999999999999999876543
No 163
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.022 Score=46.00 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=21.0
Q ss_pred HHHHHH--HhCCCccCCeeEEeccc
Q 036693 13 KFSYKR--KLVLQDLHGRRVRVNYA 35 (218)
Q Consensus 13 AqKAIe--AMNGqELDGRaIRVDeA 35 (218)
|.+||+ +||+++|+||+|||+.-
T Consensus 69 A~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 69 AFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp HHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred HHHHHHHhhhcCCeecCcEEEEEEC
Confidence 789999 89999999999999874
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.21 E-value=0.024 Score=42.61 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=24.2
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+.|++||+.||+..|.+|+|+|..+.++.
T Consensus 81 ~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 81 EAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp HHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred HHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 34899999999999999999998876653
No 165
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.16 E-value=0.026 Score=44.87 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=26.5
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||++||+..|++|+|+|.+|+++..
T Consensus 148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 348999999999999999999999987653
No 166
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.85 E-value=0.028 Score=41.17 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=22.9
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNRG 41 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~r 41 (218)
.|++||++++ .+.+|+|+|++|++++.+
T Consensus 66 ~A~~Ai~~~~--~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 66 AAELAVQNEV--GLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp HHHHHHHTCC--BCSSSBCEEECSSCCCCC
T ss_pred HHHHHHHhcC--CCCCCeEEEEEccCCCCC
Confidence 3889999855 478999999999988754
No 167
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=93.12 E-value=0.035 Score=38.25 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=23.1
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
.|++||+ |+.+|++|+|+|..|.++..
T Consensus 62 ~a~~Ai~--~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 62 DVQKIVE--SQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp CHHHHTT--CCCEETTEECEEEEEEECC-
T ss_pred HHHHHHh--CCCeECCEEEEEEECCcCcc
Confidence 3899998 99999999999999987754
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=93.10 E-value=0.062 Score=41.72 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=25.0
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
.|++||++||++.+.+|.|+|..+.+..
T Consensus 69 ~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 69 DAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred HHHHHHHHhhhhhcCCcccccccccccc
Confidence 3899999999999999999999987654
No 169
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=92.70 E-value=0.067 Score=42.92 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=25.3
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
+.|++||++||+..|.+|+|+|.+|.+.
T Consensus 69 ~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 69 TLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHHHHHcCCcEECCceeEeeecccC
Confidence 4489999999999999999999998764
No 170
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.69 E-value=0.027 Score=40.56 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=22.1
Q ss_pred hHHHHHHHhCCCccCCeeEEeccccc
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
.|++||+ ||+.+|++|+|+|..+++
T Consensus 64 ~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 64 SAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp HHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred HHHHHHH-cCCCEECCEEEEEEEchH
Confidence 3899999 999999999999997664
No 171
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=92.66 E-value=0.036 Score=35.89 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=20.2
Q ss_pred hHHHHHHHhCCCccCCeeEEeccc
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYA 35 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeA 35 (218)
.|++||+. ++.+|++|+|+|..|
T Consensus 53 ~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 53 PVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred HHHHHHHh-CCCeECCEEEEEEEC
Confidence 48999985 899999999999876
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.34 E-value=0.024 Score=42.68 Aligned_cols=26 Identities=15% Similarity=0.001 Sum_probs=22.9
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
+|++||+. |+++|.+|.|+|..|+++
T Consensus 80 ~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 80 YAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp HHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred HHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 37999986 999999999999998765
No 173
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.28 E-value=0.02 Score=42.32 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=24.2
Q ss_pred chHHHHHHHh-CCCccCCeeEEecccccC
Q 036693 11 GLKFSYKRKL-VLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 11 ~~AqKAIeAM-NGqELDGRaIRVDeArPR 38 (218)
+.|++||++| |+.+|++ +|+|+.|+++
T Consensus 24 ~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 24 ATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp HHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred HHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4499999999 9999999 9999998764
No 174
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=91.35 E-value=0.044 Score=41.70 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=22.8
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
+|++||+. ++++|++|.|+|..|+++.
T Consensus 96 ~A~~Al~~-~~~~l~gR~I~V~~a~~~e 122 (126)
T 2hgm_A 96 LAEKALGK-HKERIGHRYIEVFKSSQEE 122 (126)
T ss_dssp HHHHHHTT-TTCCBTTBCCCCEEECHHH
T ss_pred HHHHHHHH-CCCEECCEEEEEEECCHHH
Confidence 38999985 7799999999999987653
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=90.98 E-value=0.15 Score=40.48 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=24.4
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
+.|++||+.||+..|.+|+|+|..+.+.
T Consensus 68 ~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 68 EQAEAAINAFHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHHHHHcCCCeeCCeEEEEEecCCC
Confidence 3489999999999999999999986543
No 176
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.74 E-value=0.35 Score=32.42 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.2
Q ss_pred HHhCCCcc--CCeeEEecccccCCCCC
Q 036693 18 RKLVLQDL--HGRRVRVNYAADRNRGY 42 (218)
Q Consensus 18 eAMNGqEL--DGRaIRVDeArPR~~rg 42 (218)
++|+++++ .+++|+|.+|+||+.+.
T Consensus 56 ~~~~~~~~~~~g~~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 56 QSLCGEDLIIKGISVHISNAEPKHNSN 82 (88)
T ss_dssp HHTTTCEEEETTEEEEEECCCCCCCCC
T ss_pred HHHhcCCceeCCEEEEEEecCCCCCCC
Confidence 45777766 89999999999987653
No 177
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=89.00 E-value=0.23 Score=36.59 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=22.8
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR~~ 40 (218)
+.|++||+. ++.+|++|.|+|..+.++..
T Consensus 66 ~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~ 94 (196)
T 1l3k_A 66 EEVDAAMNA-RPHKVDGRVVEPKRAVSRED 94 (196)
T ss_dssp HHHHHHHHT-CSCEETTEECEEEECCC---
T ss_pred HHHHHHHhc-CCCEECCEEeeeecccCccc
Confidence 348999976 99999999999999887653
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=88.95 E-value=0.24 Score=35.57 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=24.8
Q ss_pred chHHHHHHHhCCCccC---CeeEEecccccCCC
Q 036693 11 GLKFSYKRKLVLQDLH---GRRVRVNYAADRNR 40 (218)
Q Consensus 11 ~~AqKAIeAMNGqELD---GRaIRVDeArPR~~ 40 (218)
+.|++||++||++.+. .|+|+|..+++++.
T Consensus 58 ~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 58 KAALEAQNALHNMKVLPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp HHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC
T ss_pred HHHHHHHHHhcCcEEccCCccceEEcccccccc
Confidence 3489999999999887 78999998876654
No 179
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=87.17 E-value=0.36 Score=33.28 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=16.8
Q ss_pred HHHhCCCccC--CeeEEecccccCCCC
Q 036693 17 KRKLVLQDLH--GRRVRVNYAADRNRG 41 (218)
Q Consensus 17 IeAMNGqELD--GRaIRVDeArPR~~r 41 (218)
.++|+++++. +|+|+|..|+||..+
T Consensus 61 A~~~~~~~~~~~g~~v~v~~a~~k~~~ 87 (89)
T 3d2w_A 61 AQSLCGEDLIIKGISVHISNAEPKHNK 87 (89)
T ss_dssp HHHHTTCEEEETTEEEEEEECC-----
T ss_pred HHHHcCCCcccCCEEEEEEEcCCCCcC
Confidence 3468888766 999999999998754
No 180
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=86.61 E-value=0.36 Score=42.79 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=22.0
Q ss_pred hchHHHHHHHhCCCccC---Ce--eEEecccc
Q 036693 10 IGLKFSYKRKLVLQDLH---GR--RVRVNYAA 36 (218)
Q Consensus 10 I~~AqKAIeAMNGqELD---GR--aIRVDeAr 36 (218)
.++|++||++||++++. || +|.|++++
T Consensus 66 ~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 66 TEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 34599999999999994 56 68888885
No 181
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=85.76 E-value=0.36 Score=38.46 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccCCeeEEeccc
Q 036693 13 KFSYKRKLVLQDLHGRRVRVNYA 35 (218)
Q Consensus 13 AqKAIeAMNGqELDGRaIRVDeA 35 (218)
|-||.-+|||.+|++|+|||-..
T Consensus 75 AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 75 AAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHHHHSSEEETTEEEEEECH
T ss_pred hHHHHhhcCCeeecCeEEEecCH
Confidence 78888899999999999999653
No 182
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.71 E-value=0.5 Score=33.53 Aligned_cols=24 Identities=4% Similarity=-0.086 Sum_probs=16.4
Q ss_pred hHHHHHHHhCCCccCCeeEEeccccc
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAAD 37 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArP 37 (218)
.|++||++|+ +++|+.|.|..+.+
T Consensus 64 ~a~~Ai~~~~--~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 64 SVQALIDACL--EEDGKLYLCVSSPT 87 (114)
T ss_dssp HHHHHHHHSE--EETTEEEEEECCSS
T ss_pred HHHHHHHhhh--hcCCcEEEeccCCC
Confidence 4899999994 46666666665443
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=84.01 E-value=0.27 Score=39.36 Aligned_cols=29 Identities=10% Similarity=-0.169 Sum_probs=22.7
Q ss_pred chHHHHHHHhCCCccC----CeeEEecccccCC
Q 036693 11 GLKFSYKRKLVLQDLH----GRRVRVNYAADRN 39 (218)
Q Consensus 11 ~~AqKAIeAMNGqELD----GRaIRVDeArPR~ 39 (218)
..|++||++||+..+. +|+|+|+.|+++.
T Consensus 148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 3489999999654444 9999999988754
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=83.18 E-value=0.66 Score=36.89 Aligned_cols=27 Identities=4% Similarity=-0.105 Sum_probs=22.7
Q ss_pred chHHHHHHHhCCCccCCeeEEecccccC
Q 036693 11 GLKFSYKRKLVLQDLHGRRVRVNYAADR 38 (218)
Q Consensus 11 ~~AqKAIeAMNGqELDGRaIRVDeArPR 38 (218)
+.|++||+ ||+..|.+|+|+|..+.++
T Consensus 92 ~~A~~A~~-~~~~~~~g~~i~v~~~~~~ 118 (292)
T 2ghp_A 92 DGALAAIT-KTHKVVGQNEIIVSHLTEC 118 (292)
T ss_dssp HHHHHHHT-TTTCEETTEECEEEECCSC
T ss_pred HHHHHHHH-hCCcEeCCcEEEEEECCCC
Confidence 34899995 9999999999999987543
No 185
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.76 E-value=1.5 Score=33.77 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=26.1
Q ss_pred hchHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 10 IGLKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 10 I~~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
.+.|.+|-..||+.+++|++|||.+|+|-.
T Consensus 56 ~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 56 PLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp TTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred hHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 345899999999999999999999998653
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=73.46 E-value=1.3 Score=31.63 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=21.0
Q ss_pred hHHHHHHHhCCCccCCeeEEecccccCC
Q 036693 12 LKFSYKRKLVLQDLHGRRVRVNYAADRN 39 (218)
Q Consensus 12 ~AqKAIeAMNGqELDGRaIRVDeArPR~ 39 (218)
.|++||++ ...|++|.|+|..+.|+.
T Consensus 57 ~a~~A~~~--~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 57 SVDEVVKT--QHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp HHHHHHHS--CCEETTEECCCEECCCHH
T ss_pred HHHHHHhc--ccccCCeEcccccccchh
Confidence 37888885 578999999999987653
No 187
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=59.63 E-value=4.2 Score=27.41 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCccCCeeEEecccc
Q 036693 13 KFSYKRKLVLQDLHGRRVRVNYAA 36 (218)
Q Consensus 13 AqKAIeAMNGqELDGRaIRVDeAr 36 (218)
+++++++|+...+.+|+|+|..|+
T Consensus 52 ~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 52 GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp HHHHHHHHTTCCC---CCCEEECC
T ss_pred HHHHHHHhccccCcCceEEEEECC
Confidence 799999999999999999998765
No 188
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.99 E-value=30 Score=26.47 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=19.2
Q ss_pred HHHHHHHhC--CCccCCeeEEeccc
Q 036693 13 KFSYKRKLV--LQDLHGRRVRVNYA 35 (218)
Q Consensus 13 AqKAIeAMN--GqELDGRaIRVDeA 35 (218)
|++||++|| +.+|.+..++|...
T Consensus 69 A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 69 ALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp HHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred HHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 899999994 78999999988653
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=23.34 E-value=37 Score=28.49 Aligned_cols=15 Identities=20% Similarity=-0.066 Sum_probs=12.8
Q ss_pred chHHHHHHHhCCCcc
Q 036693 11 GLKFSYKRKLVLQDL 25 (218)
Q Consensus 11 ~~AqKAIeAMNGqEL 25 (218)
+.|++||++||+++|
T Consensus 190 ~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 190 ANAEFAKEAMSNQTL 204 (240)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCEE
Confidence 348999999999887
Done!