Citrus Sinensis ID: 036696

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
MAKENISLLIIFISLSSIFYPALSRRPSATNITWWCSKTPHPEPCKYFLSRSHHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFGTNCENKHQKAAWSDCVKLYANTVLQLNRTLQGLKSDRSCTDFDAQTWLSTALTNIRTCQSGYMELNVSDFITPVMSNNLSQLISNSLAVNGVLLKSENVTYTNGFPSWLSGHERNLLESSSLEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGVPFILGL
ccccHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEccccccEEEEccccccccccccccEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEcccccEEcccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEccccccccEEEEcccccccccEEEEEEccEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
cHHHHHHEEEEHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccEEEEEcccccccHHHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccc
MAKENISLLIIFISLSsifypalsrrpsatnitwwcsktphpepckyflsrshhrytfkhrSDFRKIIVQVAIEQAHKAHEQLMEFgtncenkhqkaaWSDCVKLYANTVLQLNRTLqglksdrsctdfdAQTWLSTALTNIRtcqsgymelnvsdfitpvmsNNLSQLISNSLAVNGVLlksenvtytngfpswlsghernllessslEARANLVVatdgsgnyRTIQAAINAAAGRRGSGRFIIHVKrgvyrenievglnnnnimLVGEGMRNTIitsgrsvgsgsttyssatagidglhfmgrditfqntagplKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIfvrkplkgqanvitaqgrndpfqntaisihssrvlpandlkpvVRNFktylgrpwqqySRTVILKTYIdgfvsplgwstwspgnnfaldtlfygeyenygpgsstrhrvkwrgfhvitspkvasqFTVGSliagrswlpatgvpfilgl
MAKENISLLIIFISLSSIFYPALSRRPSATNITWWCSKTPHPEPCKYFLSRSHHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFGTNCENKHQKAAWSDCVKLYANTVLQLNRTLQGLKSDRSCTDFDAQTWLSTALTNIRTCQSGYMELNVSDFITPVMSNNLSQLISNSLAVNGVLLKSENVTYTNGFPSWLSGHERNLLESSSLEARANLVVatdgsgnyRTIQAAInaaagrrgsgRFIIHVKrgvyrenievglnnnnIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISihssrvlpandlKPVVRNFKtylgrpwqqysRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIagrswlpatgvpfilgl
MAKENislliifislssifYPALSRRPSATNITWWCSKTPHPEPCKYFLSRSHHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFGTNCENKHQKAAWSDCVKLYANTVLQLNRTLQGLKSDRSCTDFDAQTWLSTALTNIRTCQSGYMELNVSDFITPVMsnnlsqlisnslAVNGVLLKSENVTYTNGFPSWLSGHERNLLESSSLEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIItsgrsvgsgsttyssatagIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGVPFILGL
*****ISLLIIFISLSSIFYPALSRRPSATNITWWCSKTPHPEPCKYFLSRSHHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFGTNCENKHQKAAWSDCVKLYANTVLQLNRTLQGLKSDRSCTDFDAQTWLSTALTNIRTCQSGYMELNVSDFITPVMSNNLSQLISNSLAVNGVLLKSENVTYTNGFPSWLSGHERNLLE***LEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGVPFIL**
***ENISLLIIFISLSSI****************WCSKTPHPEPCKY****************FRKIIVQVAIEQAHKA******************AWSDCVKLYANTVLQLNR**************DAQTWLSTALTNIRTCQSGYMELN***********NLSQLISNSLAVNG*******************GHE**L****SLEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGVPFILGL
MAKENISLLIIFISLSSIFYPALSRRPSATNITWWCSKTPHPEPCKYFLSRSHHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFGTNCENKHQKAAWSDCVKLYANTVLQLNRTLQGLKSDRSCTDFDAQTWLSTALTNIRTCQSGYMELNVSDFITPVMSNNLSQLISNSLAVNGVLLKSENVTYTNGFPSWLSGHERNLLESSSLEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGVPFILGL
*AKENISLLIIFISLSSIFYPALSRRPSATNITWWCSKTPHPEPCKYFLSRSHHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFGTNCENKHQKAAWSDCVKLYANTVLQLNRTLQGLKSDRSCTDFDAQTWLSTALTNIRTCQSGYMELNVSDFITPVMSNNLSQLISNSLAVNGVLLKSE****TNGFPSWLSGHERNLLESSSLEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGVPFI***
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKENISLLIIFISLSSIFYPALSRRPSATNITWWCSKTPHPEPCKYFLSRSHHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFGTNCENKHQKAAWSDCVKLYANTVLQLNRTLQGLKSDRSCTDFDAQTWLSTALTNIRTCQSGYMELNVSDFITPVMSNNLSQLISNSLAVNGVLLKSENVTYTNGFPSWLSGHERNLLESSSLEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGVPFILGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query528 2.2.26 [Sep-21-2011]
Q9STY3594 Probable pectinesterase/p yes no 0.943 0.838 0.650 0.0
Q9FHN4540 Probable pectinesterase/p no no 0.935 0.914 0.632 0.0
Q9FHN5536 Probable pectinesterase/p no no 0.935 0.921 0.612 0.0
O04887510 Pectinesterase 2 OS=Citru no no 0.950 0.984 0.543 1e-163
O22149511 Probable pectinesterase/p no no 0.907 0.937 0.525 1e-151
P83948584 Pectinesterase 3 OS=Citru no no 0.920 0.832 0.450 1e-117
O81320474 Putative pectinesterase/p no no 0.869 0.968 0.461 1e-115
O04886584 Pectinesterase 1 OS=Citru no no 0.920 0.832 0.452 1e-114
P14280546 Pectinesterase 1 OS=Solan N/A no 0.916 0.886 0.430 1e-113
P83947545 Pectinesterase/pectineste N/A no 0.969 0.939 0.429 1e-113
>sp|Q9STY3|PME33_ARATH Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1 Back     alignment and function desciption
 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/512 (65%), Positives = 404/512 (78%), Gaps = 14/512 (2%)

Query: 31  NITWWCSKTPHPEPCKYFLSRSHHR----YTFKHRSDFRKIIVQVAIEQAHKAHEQLMEF 86
           ++TWWC+KTPH E C Y+  +S          + RS+F +++V+VA++QA   H Q ++F
Sbjct: 83  DMTWWCNKTPHAETCNYYFRKSSQNNINLRPPRFRSEFLRMLVKVALDQAVITHSQTVKF 142

Query: 87  GTNCENKHQKAAWSDCVKLYANTVLQLNRTLQGLK----SDRSCTDFDAQTWLSTALTNI 142
           G +C N  +KAAWSDCV L+ NTV QLNRTL+GL     SD  CTDFDAQTWLSTA TNI
Sbjct: 143 GPSCTNNQRKAAWSDCVNLFQNTVAQLNRTLKGLNPAASSDVKCTDFDAQTWLSTAQTNI 202

Query: 143 RTCQSGYMELNVSDFITPVMSN-NLSQLISNSLAVNGVLLKSENVTYTNG----FPSWLS 197
            TC+SG  +LNVSDF+ PV+SN NLS LI N LAVNGVL+K  + T T      FPSW+S
Sbjct: 203 ETCRSGSEDLNVSDFVMPVISNKNLSDLIGNCLAVNGVLMKQHDHTTTANHKEYFPSWVS 262

Query: 198 GHERNLLESSSL-EARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYREN 256
            HER LL S+SL ++  +LVVA D SG++R+IQAAIN AA RR   RF+I+VK+GVYREN
Sbjct: 263 RHERRLLVSASLAKSSPHLVVAQDRSGHFRSIQAAINFAARRRFKSRFVIYVKKGVYREN 322

Query: 257 IEVGLNNNNIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGP 316
           I+VG +N+NIMLVG+G R TIITSGRSV  G TTY+SAT G  G  F+ +D+TF NTAGP
Sbjct: 323 IDVGNDNHNIMLVGDGERKTIITSGRSVQHGYTTYNSATGGFGGQRFVAKDMTFINTAGP 382

Query: 317 LKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQN 376
           L+GQAVA+RS+SDLSVFYR    G+QDTL +HSQRQF+++CYI GTIDFIFGNAAVVFQN
Sbjct: 383 LRGQAVAVRSSSDLSVFYRVGIHGFQDTLYIHSQRQFFRECYISGTIDFIFGNAAVVFQN 442

Query: 377 CIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQ 436
           C+I VR+PL GQAN+ITAQGR DPFQNT I+IHSSR++ A+DLKPV+R +KTYLGRPWQ 
Sbjct: 443 CMILVRRPLHGQANIITAQGRGDPFQNTGITIHSSRIIAASDLKPVIRAYKTYLGRPWQA 502

Query: 437 YSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVI 496
           YSR  I+KTYID  +SPLGWS W  G+NFAL+T+FYGEY+N+GPGSSTR RV+W+GFH I
Sbjct: 503 YSRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAI 562

Query: 497 TSPKVASQFTVGSLIAGRSWLPATGVPFILGL 528
           TS  VAS+FTVGSLIAG SWLPATGVPF  GL
Sbjct: 563 TSTAVASRFTVGSLIAGGSWLPATGVPFKSGL 594
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9FHN4|PME60_ARATH Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1 Back     alignment and function description
>sp|Q9FHN5|PME59_ARATH Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|O81320|PME38_ARATH Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=3 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|P14280|PME1_SOLLC Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query528
255539749526 Pectinesterase-2 precursor, putative [Ri 0.943 0.946 0.715 0.0
224136734524 predicted protein [Populus trichocarpa] 0.975 0.982 0.701 0.0
225466085523 PREDICTED: probable pectinesterase/pecti 0.937 0.946 0.696 0.0
224120254527 predicted protein [Populus trichocarpa] 0.981 0.982 0.675 0.0
356544259531 PREDICTED: probable pectinesterase/pecti 0.967 0.962 0.655 0.0
297815910594 pectinesterase family protein [Arabidops 0.943 0.838 0.646 0.0
15232793594 pectinesterase 33 [Arabidopsis thaliana] 0.943 0.838 0.650 0.0
356529887534 PREDICTED: probable pectinesterase/pecti 0.965 0.955 0.637 0.0
357455899527 Pectinesterase [Medicago truncatula] gi| 0.992 0.994 0.606 0.0
357455889527 Pectinesterase [Medicago truncatula] gi| 0.992 0.994 0.606 0.0
>gi|255539749|ref|XP_002510939.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223550054|gb|EEF51541.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/503 (71%), Positives = 428/503 (85%), Gaps = 5/503 (0%)

Query: 28  SATNITWWCSKTPHPEPCKYFLSRSHHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFG 87
           S TN+TWWCS+TPHPE CKYF+     R   KHRS+FRKI VQVA+E+A  A +++ +  
Sbjct: 27  SKTNVTWWCSQTPHPETCKYFIGHRLQRVALKHRSEFRKITVQVALERALSAQKKVSKLR 86

Query: 88  TNCENKHQKAAWSDCVKLYANTVLQLNRTLQGL--KSDRSCTDFDAQTWLSTALTNIRTC 145
             C++ HQ+A W DC KL+++T++QLNRTLQGL  K  +SCTDFDAQTWLSTALTNI+TC
Sbjct: 87  PKCQDHHQRAVWVDCHKLHSDTIVQLNRTLQGLAAKKKKSCTDFDAQTWLSTALTNIQTC 146

Query: 146 QSGYMELNVSDFITPVMSNNLSQLISNSLAVNGVLLKSENVTYTNGFPSWLSGHERNLLE 205
           ++G ++ NVSDFI P++S+NLS+LISN LA+NGVLL  +N +    FP W S  ER LL+
Sbjct: 147 RTGSLDFNVSDFIMPIVSSNLSKLISNGLAINGVLLSVQNNSIEGLFPRWFSRKERRLLQ 206

Query: 206 SSSLEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNN 265
           + S+  +ANLVVA DGSG++RT+QAAINAAA RR   RF+IHVK+GVYRENIEVG+NNNN
Sbjct: 207 APSI--KANLVVAQDGSGHFRTVQAAINAAAKRRYGTRFVIHVKKGVYRENIEVGINNNN 264

Query: 266 IMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALR 325
           I LVG+G+RNTIITSGRSVG+G TTYSSATAGIDGL F+ R ITF+NTAGPLKGQAVALR
Sbjct: 265 IWLVGDGLRNTIITSGRSVGAGYTTYSSATAGIDGLRFVARGITFRNTAGPLKGQAVALR 324

Query: 326 SASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPL 385
           SASDLSVFYRC+F+GYQDTL VHSQRQFY++CY+YGTIDFIFGNAAVVFQNCII+VR+PL
Sbjct: 325 SASDLSVFYRCSFEGYQDTLFVHSQRQFYRECYVYGTIDFIFGNAAVVFQNCIIYVRRPL 384

Query: 386 KGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKT 445
           KGQAN+ITAQGRNDPFQNT ISIH+SR+LPA DLKPVVR  +TYLGRPW QYSRTV+LK+
Sbjct: 385 KGQANMITAQGRNDPFQNTGISIHNSRILPAPDLKPVVRAVQTYLGRPWMQYSRTVVLKS 444

Query: 446 YIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQF 505
           YID F+ P GWS W  G+NFAL+TL+Y EY+N+GPGSSTR RVKW+G+HVITS  VAS F
Sbjct: 445 YIDSFIHPAGWSQWQ-GSNFALNTLYYAEYKNFGPGSSTRRRVKWKGYHVITSSTVASSF 503

Query: 506 TVGSLIAGRSWLPATGVPFILGL 528
           TVG LIAG+SWLPATGVPFI GL
Sbjct: 504 TVGRLIAGQSWLPATGVPFISGL 526

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224136734|ref|XP_002322402.1| predicted protein [Populus trichocarpa] gi|222869398|gb|EEF06529.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225466085|ref|XP_002264861.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 59-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|224120254|ref|XP_002318284.1| predicted protein [Populus trichocarpa] gi|222858957|gb|EEE96504.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356544259|ref|XP_003540571.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 33-like [Glycine max] Back     alignment and taxonomy information
>gi|297815910|ref|XP_002875838.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297321676|gb|EFH52097.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15232793|ref|NP_190324.1| pectinesterase 33 [Arabidopsis thaliana] gi|75313890|sp|Q9STY3.1|PME33_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 33; Includes: RecName: Full=Pectinesterase inhibitor 33; AltName: Full=Pectin methylesterase inhibitor 33; Includes: RecName: Full=Pectinesterase 33; Short=PE 33; AltName: Full=Pectin methylesterase 33; Short=AtPME33; Flags: Precursor gi|5541707|emb|CAB51212.1| pectinesterase-like protein [Arabidopsis thaliana] gi|332644756|gb|AEE78277.1| pectinesterase 33 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356529887|ref|XP_003533518.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 33-like [Glycine max] Back     alignment and taxonomy information
>gi|357455899|ref|XP_003598230.1| Pectinesterase [Medicago truncatula] gi|355487278|gb|AES68481.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357455889|ref|XP_003598225.1| Pectinesterase [Medicago truncatula] gi|355487273|gb|AES68476.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query528
TAIR|locus:2099565594 AT3G47400 [Arabidopsis thalian 0.943 0.838 0.605 1.3e-164
TAIR|locus:2153127540 AT5G51500 [Arabidopsis thalian 0.935 0.914 0.586 6.8e-159
TAIR|locus:2153112536 AT5G51490 [Arabidopsis thalian 0.931 0.917 0.574 1e-155
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.907 0.937 0.495 4.2e-127
TAIR|locus:2201230554 AT1G23200 [Arabidopsis thalian 0.617 0.588 0.494 7.7e-97
TAIR|locus:2126941474 PME38 "pectin methylesterase 3 0.780 0.869 0.463 9.7e-96
TAIR|locus:2133219518 AT4G02320 [Arabidopsis thalian 0.835 0.851 0.444 1.8e-94
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.634 0.565 0.511 6.9e-94
TAIR|locus:2101836519 AT3G60730 [Arabidopsis thalian 0.611 0.622 0.531 6.9e-94
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.920 0.872 0.399 3.4e-93
TAIR|locus:2099565 AT3G47400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1602 (569.0 bits), Expect = 1.3e-164, P = 1.3e-164
 Identities = 310/512 (60%), Positives = 380/512 (74%)

Query:    31 NITWWCSKTPHPEPCKYFLSRSHHRYTF----KHRSDFRKIIVQVAIEQAHKAHEQLMEF 86
             ++TWWC+KTPH E C Y+  +S          + RS+F +++V+VA++QA   H Q ++F
Sbjct:    83 DMTWWCNKTPHAETCNYYFRKSSQNNINLRPPRFRSEFLRMLVKVALDQAVITHSQTVKF 142

Query:    87 GTNCENKHQKAAWSDCVKLYANTVLQLNRTLQGLK----SDRSCTDFDAQTWLSTALTNI 142
             G +C N  +KAAWSDCV L+ NTV QLNRTL+GL     SD  CTDFDAQTWLSTA TNI
Sbjct:   143 GPSCTNNQRKAAWSDCVNLFQNTVAQLNRTLKGLNPAASSDVKCTDFDAQTWLSTAQTNI 202

Query:   143 RTCQSGYMELNVSDFITPVMXXXXXXXXXXX-XAVNGVLLKSENVTYTNG----FPSWLS 197
              TC+SG  +LNVSDF+ PV+             AVNGVL+K  + T T      FPSW+S
Sbjct:   203 ETCRSGSEDLNVSDFVMPVISNKNLSDLIGNCLAVNGVLMKQHDHTTTANHKEYFPSWVS 262

Query:   198 GHERNLLESSSL-EARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYREN 256
              HER LL S+SL ++  +LVVA D SG++R+IQAAIN AA RR   RF+I+VK+GVYREN
Sbjct:   263 RHERRLLVSASLAKSSPHLVVAQDRSGHFRSIQAAINFAARRRFKSRFVIYVKKGVYREN 322

Query:   257 IEVGLNNNNIMLVGEGMRNTIIXXXXXXXXXXXXXXXXXXXIDGLHFMGRDITFQNTAGP 316
             I+VG +N+NIMLVG+G R TII                     G  F+ +D+TF NTAGP
Sbjct:   323 IDVGNDNHNIMLVGDGERKTIITSGRSVQHGYTTYNSATGGFGGQRFVAKDMTFINTAGP 382

Query:   317 LKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQN 376
             L+GQAVA+RS+SDLSVFYR    G+QDTL +HSQRQF+++CYI GTIDFIFGNAAVVFQN
Sbjct:   383 LRGQAVAVRSSSDLSVFYRVGIHGFQDTLYIHSQRQFFRECYISGTIDFIFGNAAVVFQN 442

Query:   377 CIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQ 436
             C+I VR+PL GQAN+ITAQGR DPFQNT I+IHSSR++ A+DLKPV+R +KTYLGRPWQ 
Sbjct:   443 CMILVRRPLHGQANIITAQGRGDPFQNTGITIHSSRIIAASDLKPVIRAYKTYLGRPWQA 502

Query:   437 YSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVI 496
             YSR  I+KTYID  +SPLGWS W  G+NFAL+T+FYGEY+N+GPGSSTR RV+W+GFH I
Sbjct:   503 YSRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAI 562

Query:   497 TSPKVASQFTVGSLIAGRSWLPATGVPFILGL 528
             TS  VAS+FTVGSLIAG SWLPATGVPF  GL
Sbjct:   563 TSTAVASRFTVGSLIAGGSWLPATGVPFKSGL 594
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2153127 AT5G51500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126941 PME38 "pectin methylesterase 38" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133219 AT4G02320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101836 AT3G60730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9STY3PME33_ARATH3, ., 1, ., 1, ., 1, 10.65030.94310.8383yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.946
3rd Layer3.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-175
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-168
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-159
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-154
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-151
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-146
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-143
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-143
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-143
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-142
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-142
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-138
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-135
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-132
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-127
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-124
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-121
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-111
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-108
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-105
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-84
PLN02432293 PLN02432, PLN02432, putative pectinesterase 5e-61
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 2e-57
PLN02773317 PLN02773, PLN02773, pectinesterase 2e-57
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-53
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 5e-47
PLN02497331 PLN02497, PLN02497, probable pectinesterase 6e-47
PLN02634359 PLN02634, PLN02634, probable pectinesterase 4e-46
PLN02671359 PLN02671, PLN02671, pectinesterase 3e-43
PLN02304379 PLN02304, PLN02304, probable pectinesterase 7e-43
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 5e-36
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 8e-30
PLN02176340 PLN02176, PLN02176, putative pectinesterase 6e-29
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 5e-26
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 1e-22
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 4e-19
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  678 bits (1750), Expect = 0.0
 Identities = 325/546 (59%), Positives = 406/546 (74%), Gaps = 27/546 (4%)

Query: 1   MAKENISLLIIFISLSSIFYPALSRRP-------SATNITWWCSKTPHPEPCK-YFLSRS 52
           M  + IS    F+SL  +    L   P       ++T+I  WC KTP+P+PCK YF + +
Sbjct: 3   MMMQKIS----FLSLHLLLLLLLCVHPLTTVADGNSTDIDGWCDKTPYPDPCKCYFKNHN 58

Query: 53  HHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFGTNCENKHQKAAWSDCVKLYANTVLQ 112
             R      S+FR ++V+ A+++A  A ++L   G NC +  ++A  +DC+ LY +T++Q
Sbjct: 59  GFRQP-TQISEFRVMLVEAAMDRAISARDELTNSGKNCTDFKKQAVLADCIDLYGDTIMQ 117

Query: 113 LNRTLQGLKSD----RSCTDFDAQTWLSTALTNIRTCQSGYMELNVSDFITPVMSNN-LS 167
           LNRTLQG+       + CTDFDAQTWLSTALTN  TC+ G  +LNVSDFITP++SN  +S
Sbjct: 118 LNRTLQGVSPKAGAAKRCTDFDAQTWLSTALTNTETCRRGSSDLNVSDFITPIVSNTKIS 177

Query: 168 QLISNSLAVNGVLLKSENVTYTN----GFPSWLSGHERNLLESSSLEARANLVVATDGSG 223
            LISN LAVNG LL + N   T     GFP+W+S  +R LL       RANLVVA DGSG
Sbjct: 178 HLISNCLAVNGALLTAGNNGNTTANQKGFPTWVSRKDRRLLRL----VRANLVVAKDGSG 233

Query: 224 NYRTIQAAINAAAGRR-GSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIITSGR 282
           ++ T+QAAI+ A  R+  SGRF+I+VKRG+Y+ENI V LNN++IMLVG+GMR+TIIT GR
Sbjct: 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQENINVRLNNDDIMLVGDGMRSTIITGGR 293

Query: 283 SVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQ 342
           SV  G TTY+SATAGI+GLHF+ + ITF+NTAGP KGQAVALRS+SDLS+FY+C+ +GYQ
Sbjct: 294 SVKGGYTTYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQ 353

Query: 343 DTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQ 402
           DTLMVHSQRQFY++CYIYGT+DFIFGNAA VFQNCII  R+PLKGQANVITAQGR DPFQ
Sbjct: 354 DTLMVHSQRQFYRECYIYGTVDFIFGNAAAVFQNCIILPRRPLKGQANVITAQGRADPFQ 413

Query: 403 NTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSPLGWSTWSPG 462
           NT ISIH+SR+LPA DLKPVVR  KTY+GRPW ++SRTV+L+TY+D  VSP+GWS W  G
Sbjct: 414 NTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNVVSPVGWSPWIEG 473

Query: 463 NNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGV 522
           + F LDTLFY EY+N GP SSTR RV+W+GFHV+     AS FTVG  IAG +WLP TG+
Sbjct: 474 SVFGLDTLFYAEYKNTGPASSTRWRVRWKGFHVLGRASDASAFTVGKFIAGTAWLPGTGI 533

Query: 523 PFILGL 528
           PF  GL
Sbjct: 534 PFTSGL 539

Length = 539
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 528
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.94
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.94
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.91
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.38
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.72
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.67
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.58
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.24
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.13
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.47
KOG1777 625 consensus Putative Zn-finger protein [General func 97.24
PLN02793443 Probable polygalacturonase 96.78
PLN02218431 polygalacturonase ADPG 96.67
PLN03010409 polygalacturonase 96.55
PLN03003456 Probable polygalacturonase At3g15720 96.46
PLN02682369 pectinesterase family protein 96.44
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.39
PRK10531422 acyl-CoA thioesterase; Provisional 96.25
PLN02671359 pectinesterase 96.18
PLN02480343 Probable pectinesterase 96.13
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.12
PLN02432293 putative pectinesterase 96.08
PLN02634359 probable pectinesterase 95.91
PLN02176340 putative pectinesterase 95.74
PLN02773317 pectinesterase 95.67
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.66
PLN02665366 pectinesterase family protein 95.59
PLN02155394 polygalacturonase 95.49
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.25
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.23
PLN02497331 probable pectinesterase 95.2
smart00656190 Amb_all Amb_all domain. 95.04
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.79
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.72
PLN02197588 pectinesterase 94.72
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.65
PLN02304379 probable pectinesterase 94.61
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 94.49
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.43
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.33
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.25
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.13
PLN02314586 pectinesterase 94.04
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.76
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.7
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.59
PLN02916502 pectinesterase family protein 93.55
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.11
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.87
PLN02468565 putative pectinesterase/pectinesterase inhibitor 92.86
PLN02301548 pectinesterase/pectinesterase inhibitor 92.84
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.75
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.59
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 92.25
PLN02170529 probable pectinesterase/pectinesterase inhibitor 92.09
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 92.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 91.64
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 91.37
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 91.18
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 90.97
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 90.68
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 85.9
smart00722146 CASH Domain present in carbohydrate binding protei 85.17
PLN02218431 polygalacturonase ADPG 83.96
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 82.6
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 80.15
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=2.8e-131  Score=1071.20  Aligned_cols=494  Identities=45%  Similarity=0.744  Sum_probs=453.4

Q ss_pred             hhHHhccCCCCCccchHHhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHH
Q 036696           30 TNITWWCSKTPHPEPCKYFLSRSHHRYTFKHRSDFRKIIVQVAIEQAHKAHEQLMEFGTNCENKHQKAAWSDCVKLYANT  109 (528)
Q Consensus        30 ~~I~~~C~~T~yp~lC~~sL~~~p~s~~~~d~~~L~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~aL~dC~e~y~~a  109 (528)
                      ..|+++|++|+||++|+++|+++|.+ ..++|++|++++++++++++.++......+....+++..+.||+||+|+|+++
T Consensus        74 ~~Iks~C~~T~YP~lC~sSLs~~p~s-~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~~~~~~r~k~AL~DClELlddA  152 (587)
T PLN02484         74 QAISKTCSKTRFPNLCVDSLLDFPGS-LTASESDLIHISFNMTLQHFSKALYLSSTISYVQMPPRVRSAYDSCLELLDDS  152 (587)
T ss_pred             HHHHHhccCCCChHHHHHHHhhcccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999876 56799999999999999999998777665544457789999999999999999


Q ss_pred             HHHHHHHHHHhhcCC-CCChhhHHHHHHHhhcchhhhhhccccc---cccccchhhhhhhHHHHHhhhhcccccccc---
Q 036696          110 VLQLNRTLQGLKSDR-SCTDFDAQTWLSTALTNIRTCQSGYMEL---NVSDFITPVMSNNLSQLISNSLAVNGVLLK---  182 (528)
Q Consensus       110 ~d~L~~a~~~L~~~~-~~~~~d~~twLSAAlt~~~TC~DgF~e~---~~~~~l~~~~~~~~~~l~SnaLAi~~~~~~---  182 (528)
                      +++|++|+.+|.... ...++|++||||||||+++||+|||++.   +++++|.+.+. ++.||+||||||++.+.+   
T Consensus       153 id~L~~Sl~~l~~~~~~~~~~DvkTWLSAALTnq~TClDGF~e~~~~~vk~~m~~~l~-~l~~LtSNALAIi~~~~~~~~  231 (587)
T PLN02484        153 VDALSRALSSVVPSSGGGSPQDVVTWLSAALTNHDTCTEGFDGVNGGEVKDQMTGALK-DLSELVSNCLAIFSASNGGDF  231 (587)
T ss_pred             HHHHHHHHHHHhccccccchHHHHhHHHHHhccHhhHHHHhhcccccchHHHHHHHHH-HHHHHHHHHHHHhhccccccc
Confidence            999999999997311 3567999999999999999999999865   36778888777 999999999999987654   


Q ss_pred             ------CCCccC----CCCCCCCccccccccccccccCccceEEEcCCCCCCCccHHHHHHHhhcCCCCceEEEEEecce
Q 036696          183 ------SENVTY----TNGFPSWLSGHERNLLESSSLEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGV  252 (528)
Q Consensus       183 ------~~~~~~----~~~~~~w~~~~~~~ll~~~~~~~~~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~~I~I~~G~  252 (528)
                            ..|++.    .++||.|++..|||||+......+++++|++||+|+|+|||+||+++|.+ +.+|++|+|+||+
T Consensus       232 ~~~~~~~~r~l~~~~~~~~~P~W~~~~dr~ll~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~-~~~r~vI~Ik~G~  310 (587)
T PLN02484        232 SGVPIQNRRRLLTEEEDISFPRWLGRRERELLGMPVSAIQADIIVSKDGNGTFKTISEAIKKAPEH-SSRRTIIYVKAGR  310 (587)
T ss_pred             cccccccccccccccccccCCCCcChhhHHHhhcccccCCceEEECCCCCCCcccHHHHHHhcccc-CCCcEEEEEeCCE
Confidence                  123332    34899999999999998765557789999999999999999999999998 7889999999999


Q ss_pred             eee-eEEEeecCCCeEEEecCCcceEEEcCCccCCCCcccccceeeeecCceEEEeeeeecCCCCCCCceEEEEecCCce
Q 036696          253 YRE-NIEVGLNNNNIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLS  331 (528)
Q Consensus       253 Y~E-~v~I~~~~~~itl~G~g~~~t~I~~~~~~~~g~~t~~sat~~v~~~~~~~~~lti~N~~g~~~~qAvAl~~~~d~~  331 (528)
                      |+| +|.|+++|+||+|+|+|.+.|+|++++...++++|+++|||.|.|++|+++||||+|++|+.++|||||++.+|++
T Consensus       311 Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~  390 (587)
T PLN02484        311 YEENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHA  390 (587)
T ss_pred             EEEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcE
Confidence            999 5999999999999999999999999998878889999999999999999999999999999889999999999999


Q ss_pred             EEEEceeecccceeeecccceeeeecEEEccceeeeccceEEEEeeEEEEecCCCCCceEEEecCCCCCCCceEEEEEcc
Q 036696          332 VFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSS  411 (528)
Q Consensus       332 ~~~nc~~~g~QDTl~~~~~r~~~~~c~I~G~vDfIfG~~~a~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c  411 (528)
                      +||||+|+|||||||++.+||||++|+|+|+||||||+|+++||+|+|+++++..++.|+||||+|+++++++||||++|
T Consensus       391 ~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c  470 (587)
T PLN02484        391 VVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHAC  470 (587)
T ss_pred             EEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEee
Confidence            99999999999999999999999999999999999999999999999999988777789999999999999999999999


Q ss_pred             EEccCCCCCCcccCceeEeeccccccceEEEEecccCCccCCCCCcCCCCCCCCCccceEEEEeeccCCCCCCCCccccC
Q 036696          412 RVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWR  491 (528)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~LGRpW~~~~~~v~~~t~~~~~i~p~GW~~w~~~~~~~~~~~~f~Ey~n~Gpg~~~~~r~~w~  491 (528)
                      +|++++++.+..+..++||||||++|+|||||+|+|+++|+|+||.+|  ++.+++++++|+||+|+|||+++++||+|+
T Consensus       471 ~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~I~p~GW~~W--~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~  548 (587)
T PLN02484        471 RILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDHIHPRGWLEW--NTTFALDTLYYGEYMNYGPGSGVGQRVKWP  548 (587)
T ss_pred             EEecCCccccccCccceeccCCCCCCceEEEEecccCCeEcccccCCC--CCCCCCCceEEEEeccccCCCCcCCCccCc
Confidence            999988765545556789999999999999999999999999999999  566778999999999999999999999999


Q ss_pred             cccccCCHHHHhcccccccccCCCCcCCCCCCCCCCC
Q 036696          492 GFHVITSPKVASQFTVGSLIAGRSWLPATGVPFILGL  528 (528)
Q Consensus       492 ~~~~~~~~~ea~~~t~~~~~~g~~W~p~~~~~~~~~~  528 (528)
                      ++|++++++||++|++++||+|++|+|.++|||.+||
T Consensus       549 ~~~~~~~~~ea~~ft~~~fi~g~~W~~~~~vp~~~gl  585 (587)
T PLN02484        549 GYRVITSTVEASKFTVAQFIYGSSWLPSTGVSFLAGL  585 (587)
T ss_pred             cccccCCHHHHHhhhHHhhcCCCCcCCCCCCCcccCC
Confidence            9999888899999999999999999999999999997

>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 5e-94
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 2e-92
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 8e-16
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 8e-16
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 7e-15
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 9e-13
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  341 bits (875), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 169/315 (53%), Positives = 208/315 (66%), Gaps = 3/315 (0%)
Query: 214 NLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGM 273
           N+VVA DGSG+Y+T+  A+ AAA      R++I +K GVYREN++V     NIM +G+G 
Sbjct: 8   NVVVAADGSGDYKTVSEAV-AAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR 66
Query: 274 RNTIIXXXXXXXXXXXXXXXXXXXIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVF 333
            +TII                     G  F+ RDITFQNTAG  K QAVALR  SDLS F
Sbjct: 67  TSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAF 126
Query: 334 YRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANVIT 393
           YRC    YQD+L VHS RQF+  C+I GT+DFIFGNAAVV Q+C I  R+P  GQ N++T
Sbjct: 127 YRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVT 186
Query: 394 AQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFVSP 453
           AQGR DP QNT I I  SR+   +DL+PV  +F TYLGRPW++YSRTV++++ I   ++P
Sbjct: 187 AQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINP 246
Query: 454 LGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAG 513
            GW  W    NFALDTL+YGEY+N G G++T  RV W+GF VITS   A  FT GS IAG
Sbjct: 247 AGWFPWD--GNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAG 304
Query: 514 RSWLPATGVPFILGL 528
            SWL AT  PF LGL
Sbjct: 305 GSWLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-165
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-164
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-122
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-122
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-101
1x91_A153 Invertase/pectin methylesterase inhibitor family p 7e-33
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 4e-29
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  469 bits (1210), Expect = e-165
 Identities = 170/317 (53%), Positives = 221/317 (69%), Gaps = 3/317 (0%)

Query: 212 RANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGE 271
            AN VVA DG+G+Y+T+  A+ AA  +    R++I+VKRG Y+EN+EV  N  N+M+VG+
Sbjct: 2   IANAVVAQDGTGDYQTLAEAVAAAPDK-SKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60

Query: 272 GMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLS 331
           GM  T IT   +V  GSTT+ SAT    G  F+ +DI  QNTAGP K QAVALR  +D+S
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120

Query: 332 VFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKPLKGQANV 391
           V  RC    YQDTL  HSQRQFY+  Y+ GT+DFIFGNAAVVFQ C +  RKP K Q N+
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNM 180

Query: 392 ITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFV 451
           +TAQGR DP Q T  SI    ++ ++DL+PV++ F TYLGRPW++YSRTV++++Y+ G +
Sbjct: 181 VTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI 240

Query: 452 SPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLI 511
           +P GW+ W    +FAL TL+YGE+ N GPG+ T  RVKW G+HVIT P  A  FTV  LI
Sbjct: 241 NPAGWAEWD--GDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLI 298

Query: 512 AGRSWLPATGVPFILGL 528
            G SWL +TGV ++ GL
Sbjct: 299 QGGSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query528
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.96
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.63
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.42
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.82
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.37
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.92
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.77
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.76
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.67
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.65
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.63
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.63
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.49
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.48
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.42
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.41
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.26
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.17
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.92
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.83
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.82
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.75
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.75
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.73
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.72
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.6
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.24
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.15
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.14
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.91
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.9
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.89
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.74
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.67
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.63
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.5
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 94.82
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 91.71
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 90.95
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 90.8
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 90.1
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 89.39
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 89.01
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 88.99
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 88.79
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 87.33
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 87.14
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 86.66
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 86.43
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 86.41
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 85.99
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 84.28
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 84.11
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.9e-91  Score=714.13  Aligned_cols=314  Identities=54%  Similarity=0.943  Sum_probs=298.0

Q ss_pred             cceEEEcCCCCCCCccHHHHHHHhhcCCCCceEEEEEecceeeeeEEEeecCCCeEEEecCCcceEEEcCCccCCCCccc
Q 036696          212 RANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIITSGRSVGSGSTTY  291 (528)
Q Consensus       212 ~~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~itl~G~g~~~t~I~~~~~~~~g~~t~  291 (528)
                      +.+++|+++|+|+|+|||+||+++|++ +++|++|+|+||+|+|+|.|++.|++|+|+|++.+.|+|+++.+..+|.+|+
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~-~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~   80 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDK-SKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTF   80 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSS-CSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccC-CCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCccc
Confidence            468999999999999999999999998 7889999999999999999998889999999999999999998888889999


Q ss_pred             ccceeeeecCceEEEeeeeecCCCCCCCceEEEEecCCceEEEEceeecccceeeecccceeeeecEEEccceeeeccce
Q 036696          292 SSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAA  371 (528)
Q Consensus       292 ~sat~~v~~~~~~~~~lti~N~~g~~~~qAvAl~~~~d~~~~~nc~~~g~QDTl~~~~~r~~~~~c~I~G~vDfIfG~~~  371 (528)
                      +++||.|.+++|+++||||+|++++.++||+||++.+|+++|+||+|+|+|||||++.+||||++|+|+|+||||||++.
T Consensus        81 ~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~  160 (317)
T 1xg2_A           81 RSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAA  160 (317)
T ss_dssp             GGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCE
T ss_pred             ceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCce
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEEEecCCCCCceEEEecCCCCCCCceEEEEEccEEccCCCCCCcccCceeEeeccccccceEEEEecccCCcc
Q 036696          372 VVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDGFV  451 (528)
Q Consensus       372 a~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~~LGRpW~~~~~~v~~~t~~~~~i  451 (528)
                      ++||+|+|+++++..++.++||||+|+++++++||||+||+|++++++.++....++||||||++|+|+||++|+|+++|
T Consensus       161 avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I  240 (317)
T 1xg2_A          161 VVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI  240 (317)
T ss_dssp             EEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTB
T ss_pred             EEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCcc
Confidence            99999999999876667899999999999999999999999999887644444568999999999999999999999999


Q ss_pred             CCCCCcCCCCCCCCCccceEEEEeeccCCCCCCCCccccCcccccCCHHHHhcccccccccCCCCcCCCCCCCCCCC
Q 036696          452 SPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGVPFILGL  528 (528)
Q Consensus       452 ~p~GW~~w~~~~~~~~~~~~f~Ey~n~Gpg~~~~~r~~w~~~~~~~~~~ea~~~t~~~~~~g~~W~p~~~~~~~~~~  528 (528)
                      +|+||.+|  ++++++++++|+||+|+|||+++++||+|+++++|++++||++|++++||+|++|+|.++|||.+||
T Consensus       241 ~p~GW~~w--~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          241 NPAGWAEW--DGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             CTTCSCCS--STTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             cccccccC--CCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            99999999  5667788999999999999999999999999999988899999999999999999999999999997
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 528
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-140
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-87
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 7e-29
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 6e-21
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 5e-04
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 0.004
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  405 bits (1041), Expect = e-140
 Identities = 180/324 (55%), Positives = 226/324 (69%), Gaps = 5/324 (1%)

Query: 205 ESSSLEARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNN 264
           ESS++    N+VVA DGSG+Y+T+  A+ AA       R++I +K GVYREN++V     
Sbjct: 1   ESSTV--GPNVVVAADGSGDYKTVSEAVAAA-PEDSKTRYVIRIKAGVYRENVDVPKKKK 57

Query: 265 NIMLVGEGMRNTIITSGRSVGSGSTTYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVAL 324
           NIM +G+G  +TIIT+ ++V  GSTT++SAT    G  F+ RDITFQNTAG  K QAVAL
Sbjct: 58  NIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVAL 117

Query: 325 RSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGNAAVVFQNCIIFVRKP 384
           R  SDLS FYRC    YQD+L VHS RQF+  C+I GT+DFIFGNAAVV Q+C I  R+P
Sbjct: 118 RVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRP 177

Query: 385 LKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILK 444
             GQ N++TAQGR DP QNT I I  SR+   +DL+PV  +F TYLGRPW++YSRTV+++
Sbjct: 178 GSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQ 237

Query: 445 TYIDGFVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQ 504
           + I   ++P GW  W    NFALDTL+YGEY+N G G++T  RV W+GF VITS   A  
Sbjct: 238 SSITNVINPAGWFPWD--GNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQG 295

Query: 505 FTVGSLIAGRSWLPATGVPFILGL 528
           FT GS IAG SWL AT  PF LGL
Sbjct: 296 FTPGSFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query528
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.94
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.94
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.04
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.68
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.12
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.47
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.45
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.89
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.47
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.44
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.1
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.01
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.94
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.89
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.85
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.74
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.71
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.45
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.13
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 90.76
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 90.35
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 87.87
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 84.72
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 83.36
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 82.48
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=3.5e-95  Score=736.33  Aligned_cols=316  Identities=56%  Similarity=0.959  Sum_probs=301.9

Q ss_pred             CccceEEEcCCCCCCCccHHHHHHHhhcCCCCceEEEEEecceeeeeEEEeecCCCeEEEecCCcceEEEcCCccCCCCc
Q 036696          210 EARANLVVATDGSGNYRTIQAAINAAAGRRGSGRFIIHVKRGVYRENIEVGLNNNNIMLVGEGMRNTIITSGRSVGSGST  289 (528)
Q Consensus       210 ~~~~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~itl~G~g~~~t~I~~~~~~~~g~~  289 (528)
                      ..+++++|++||+|||+|||+||+++|.+ +..|++|+|+||+|+|+|+|+++|++|+|+|+|++.|+|+++.+..++.+
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~-~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~   82 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPED-SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGST   82 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSS-CSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccC-CCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCc
Confidence            35788999999999999999999999998 78899999999999999999999999999999999999999988888888


Q ss_pred             ccccceeeeecCceEEEeeeeecCCCCCCCceEEEEecCCceEEEEceeecccceeeecccceeeeecEEEccceeeecc
Q 036696          290 TYSSATAGIDGLHFMGRDITFQNTAGPLKGQAVALRSASDLSVFYRCAFQGYQDTLMVHSQRQFYKKCYIYGTIDFIFGN  369 (528)
Q Consensus       290 t~~sat~~v~~~~~~~~~lti~N~~g~~~~qAvAl~~~~d~~~~~nc~~~g~QDTl~~~~~r~~~~~c~I~G~vDfIfG~  369 (528)
                      |++++||.|.+++|+++||||+|++|+.++|||||++.+||++|+||+|+|+|||||++.|||||++|+|+|+||||||+
T Consensus        83 t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~  162 (319)
T d1gq8a_          83 TFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGN  162 (319)
T ss_dssp             TGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEES
T ss_pred             cccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecC
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeeEEEEecCCCCCceEEEecCCCCCCCceEEEEEccEEccCCCCCCcccCceeEeeccccccceEEEEecccCC
Q 036696          370 AAVVFQNCIIFVRKPLKGQANVITAQGRNDPFQNTAISIHSSRVLPANDLKPVVRNFKTYLGRPWQQYSRTVILKTYIDG  449 (528)
Q Consensus       370 ~~a~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~~LGRpW~~~~~~v~~~t~~~~  449 (528)
                      ++++||+|+|+++.+..++.++||||+|+++.+++||||++|+|++++++.+.....++||||||++++||||++|+|++
T Consensus       163 ~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~  242 (319)
T d1gq8a_         163 AAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITN  242 (319)
T ss_dssp             CEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECT
T ss_pred             ceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEeccccc
Confidence            99999999999998777778999999999999999999999999999987655566789999999999999999999999


Q ss_pred             ccCCCCCcCCCCCCCCCccceEEEEeeccCCCCCCCCccccCcccccCCHHHHhcccccccccCCCCcCCCCCCCCCCC
Q 036696          450 FVSPLGWSTWSPGNNFALDTLFYGEYENYGPGSSTRHRVKWRGFHVITSPKVASQFTVGSLIAGRSWLPATGVPFILGL  528 (528)
Q Consensus       450 ~i~p~GW~~w~~~~~~~~~~~~f~Ey~n~Gpg~~~~~r~~w~~~~~~~~~~ea~~~t~~~~~~g~~W~p~~~~~~~~~~  528 (528)
                      +|+|+||.+|  ++..+.++++|+||+|+|||+++++||+|++++++++++||++|+.++||+|++|+|.++|||.+||
T Consensus       243 ~I~p~GW~~w--~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         243 VINPAGWFPW--DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TBCTTCCCCS--STTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccc--CCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999  5667789999999999999999999999999988889999999999999999999999999999998
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure