BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036697
         (253 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VOL|B Chain B, Murine Trim21 In Complex With Murine Igg Fc
          Length = 180

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 31  ETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKN 72
           E  V + E  DLG+  +  Q  G  +LSP  G  T+ ++ K+
Sbjct: 61  EVDVTQKEAWDLGVCRDSVQRKGQFSLSPENGFWTIWLWQKS 102


>pdb|1W5D|A Chain A, Crystal Structure Of Pbp4a From Bacillus Subtilis
 pdb|2J9P|A Chain A, Crystal Structure Of The Bacillus Subtilis Pbp4a, And Its
           Complex With A Peptidoglycan Mimetic Peptide.
 pdb|2J9P|B Chain B, Crystal Structure Of The Bacillus Subtilis Pbp4a, And Its
           Complex With A Peptidoglycan Mimetic Peptide
          Length = 462

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 57  LSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFD 111
           +S +P  D + I  KN A+  AAG E +L +    + E   N I I+ SV  P D
Sbjct: 186 VSVSPKTDYITI--KNDAKTTAAGSEKDLTI----EREHGTNTITIEGSV--PVD 232


>pdb|1PQ3|A Chain A, Human Arginase Ii: Crystal Structure And Physiological
           Role In Male And Female Sexual Arousal
 pdb|1PQ3|B Chain B, Human Arginase Ii: Crystal Structure And Physiological
           Role In Male And Female Sexual Arousal
 pdb|1PQ3|C Chain C, Human Arginase Ii: Crystal Structure And Physiological
           Role In Male And Female Sexual Arousal
 pdb|1PQ3|D Chain D, Human Arginase Ii: Crystal Structure And Physiological
           Role In Male And Female Sexual Arousal
 pdb|1PQ3|E Chain E, Human Arginase Ii: Crystal Structure And Physiological
           Role In Male And Female Sexual Arousal
 pdb|1PQ3|F Chain F, Human Arginase Ii: Crystal Structure And Physiological
           Role In Male And Female Sexual Arousal
          Length = 306

 Score = 27.3 bits (59), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 42  LGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEE-TELLVGMKNDGESSVNVI 100
           L  +G   +DFGD + +P P  D       N   V  A +E  E++    +DG S V   
Sbjct: 35  LSSLGCHLKDFGDLSFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVT-- 92

Query: 101 AIQASVHLPFDHSLLVQNLTGQA 123
                  L  DHSL +  ++G A
Sbjct: 93  -------LGGDHSLAIGTISGHA 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,797,157
Number of Sequences: 62578
Number of extensions: 266574
Number of successful extensions: 573
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 11
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)