BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036697
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45434|SSRA_ARATH Translocon-associated protein subunit alpha OS=Arabidopsis thaliana
GN=At2g21160 PE=2 SV=3
Length = 258
Score = 238 bits (607), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 179/239 (74%), Gaps = 8/239 (3%)
Query: 22 QVAKCQSDSE---TGVAETEGGDLG-IVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVV 77
QVA+CQSD+E + V + G + V ED D D LS PGV+TVC+FPKNSA++V
Sbjct: 20 QVARCQSDAEDHSSLVDDVVGENTDDAVEEDDHDL-DMNLSSFPGVETVCVFPKNSAKLV 78
Query: 78 AAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATF 137
AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT NNA++P S QATF
Sbjct: 79 PAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATF 138
Query: 138 PIHFCCQQ---PGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGI 194
P F Q PG FDLVG I+Y+V+ PYQS FYNGTIEVVESGG +S ESVFL+TLGI
Sbjct: 139 PYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGI 198
Query: 195 ALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSLSSKSKKKK 253
LL+L GLW + QV++L+KKTKK KVEVGT +T+AS+DEWL+GT ++ S K+K KK
Sbjct: 199 GLLLLLGLWAYSQVQRLTKKTKKVSKVEVGTRSTEASLDEWLEGTTLAKTSSGKTKNKK 257
>sp|Q54R45|SSRA_DICDI Translocon-associated protein subunit alpha OS=Dictyostelium
discoideum GN=ssr1 PE=3 SV=1
Length = 236
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 58 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQ 117
+P V IFP N + AAG E+LVG N+ + ++N+ I AS++ P D S+ +Q
Sbjct: 34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQ 93
Query: 118 NLTGQAFNNATVPVSAQATFPIHFCCQ---QPGTFDLVGSIVYEVDQHPYQSTFYNGTIE 174
N T F A V AT F +P F L+ S+ Y+ + TF+N TI
Sbjct: 94 NYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTIN 152
Query: 175 VVESGGFISIESVFLVTLGIALLVLFGLWIHG------QVKQLSKKTKKAPKVEVGTGTT 228
+ E ++S FL+ LG+ + G ++G +V+ +SK K A +VE T
Sbjct: 153 ITEKETSFDMDSFFLILLGLGFVGGIGYIVYGKMPKQKKVRTVSKVNKNAVRVE-----T 207
Query: 229 DASMDEWLQGTA 240
+ EWL GT+
Sbjct: 208 EDETAEWLSGTS 219
>sp|Q5R4X4|SSRA_PONAB Translocon-associated protein subunit alpha OS=Pongo abelii GN=SSR1
PE=2 SV=1
Length = 291
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 12/203 (5%)
Query: 55 GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
G +P DT +F K A + LVG N G V ++ AS P D+
Sbjct: 75 GEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132
Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
+QN T N VP QATF F +P F LV ++ Y +++ + +Q +N
Sbjct: 133 YIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 191
Query: 171 GTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTT 228
T+ V+E + E++F+ G+ LLV+ GL Q+ + K+ + KVE+GT +
Sbjct: 192 QTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLH---QLLESRKRKRPVQKVEMGTSSQ 248
Query: 229 DASMDEWLQGTAYTQSLSSKSKK 251
+ W+ Q + S+ K
Sbjct: 249 NDVDMSWIPQETLNQIMQSRRDK 271
>sp|P43307|SSRA_HUMAN Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1
PE=1 SV=3
Length = 286
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 12/203 (5%)
Query: 55 GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
G +P DT +F K A + LVG N G V ++ AS P D+
Sbjct: 75 GEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132
Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
+QN T N VP QATF F +P F LV ++ Y +++ + +Q +N
Sbjct: 133 YIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 191
Query: 171 GTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTT 228
T+ V+E + E++F+ G+ LLV+ GL Q+ + K+ + KVE+GT +
Sbjct: 192 QTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLH---QLLESRKRKRPIQKVEMGTSSQ 248
Query: 229 DASMDEWLQGTAYTQSLSSKSKK 251
+ W+ Q + ++
Sbjct: 249 NDVDMSWIPQETLNQINKASPRR 271
>sp|P45433|SSRA_ONCMY Translocon-associated protein subunit alpha OS=Oncorhynchus mykiss
GN=ssr1 PE=2 SV=1
Length = 288
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 50 QDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLP 109
+D G ++ P DT +F + A E + LVG N G V +++AS P
Sbjct: 71 EDAAVGDVTSHPDADTTIVF--VTGEEFPANEIVKFLVGFTNKGSQDFTVHSLEASFRYP 128
Query: 110 FDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVYEVDQ-HPYQ 165
D +QN T + P QA+F F QP F LV + Y+ + + +Q
Sbjct: 129 QDFQFYIQNFTALPLSTVVQP-QKQASFEYSFIPAQPMAGRPFGLVILLNYQDSEGNGFQ 187
Query: 166 STFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGLWIHGQVKQLSKKTKKAP-KVE 222
+ YN T+ +VE + E++F+ G+ +L +FG++ QV + S+ K+ P KVE
Sbjct: 188 TAIYNQTVTIVELEEGLDGETIFMYIFLTGLVVLAVFGMY---QVLE-SRTRKRFPVKVE 243
Query: 223 VGTGTTDASMDEWL-QGTAYTQSLSSKSKK 251
GTG + W+ Q T S +S S K
Sbjct: 244 TGTGGMNGVDISWIPQETLNIMSKASASPK 273
>sp|Q9CY50|SSRA_MOUSE Translocon-associated protein subunit alpha OS=Mus musculus GN=Ssr1
PE=1 SV=1
Length = 286
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 8/197 (4%)
Query: 60 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNL 119
+P DT +F K A + LVG N G V ++ AS P D+ +QN
Sbjct: 80 SPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNF 137
Query: 120 TGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYNGTIEV 175
T N VP QATF F +P F LV ++ Y +++ + +Q +N T+ V
Sbjct: 138 TALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTV 196
Query: 176 VESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEW 235
+E + E++F+ +A L L + Q+ + K+ + KVE+GT + + W
Sbjct: 197 IEREDGLDGETIFMYMF-LAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSW 255
Query: 236 LQGTAYTQSLSSKSKKK 252
+ Q + +++
Sbjct: 256 IPQETLNQINKASPRRQ 272
>sp|A6QLP7|SSRA_BOVIN Translocon-associated protein subunit alpha OS=Bos taurus GN=SSR1
PE=2 SV=1
Length = 286
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 8/193 (4%)
Query: 55 GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
G +P DT +F K A + LVG N G V ++ AS P D+
Sbjct: 75 GEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132
Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
+QN T N VP QATF F +P F LV ++ Y +++ + +Q +N
Sbjct: 133 YIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 191
Query: 171 GTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDA 230
T+ ++E + E++F+ +A L L + Q+ + K+ + KVE+GT + +
Sbjct: 192 QTVTIIEREDGLDGETIFMYMF-LAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQND 250
Query: 231 SMDEWLQGTAYTQ 243
W+ Q
Sbjct: 251 VDMSWIPQETLNQ 263
>sp|P16967|SSRA_CANFA Translocon-associated protein subunit alpha OS=Canis familiaris
GN=SSR1 PE=1 SV=1
Length = 286
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 8/186 (4%)
Query: 55 GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
G +P DT +F K A + LVG N G V ++ AS P D+
Sbjct: 75 GEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132
Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
+QN T N VP QATF F +P F LV ++ Y +++ + +Q +N
Sbjct: 133 YIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 191
Query: 171 GTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDA 230
T+ ++E + E++F+ +A L L + Q+ + K+ + KVE+GT + +
Sbjct: 192 QTVTIIEREDGLDGETIFMYMF-LAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQND 250
Query: 231 SMDEWL 236
W+
Sbjct: 251 VDMSWI 256
>sp|Q7TPJ0|SSRA_RAT Translocon-associated protein subunit alpha OS=Rattus norvegicus
GN=Ssr1 PE=2 SV=1
Length = 319
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 8/195 (4%)
Query: 60 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNL 119
+P DT +F K A + LVG N G V ++ AS P D+ +QN
Sbjct: 81 SPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNF 138
Query: 120 TGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYNGTIEV 175
T N VP QATF F +P F LV ++ Y +++ + +Q +N T+ V
Sbjct: 139 TALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTV 197
Query: 176 VESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEW 235
+E + E++F+ +A L L + Q+ + K+ + KVE+GT + + W
Sbjct: 198 IEREDGLDGETIFMYMF-LAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSW 256
Query: 236 LQGTAYTQSLSSKSK 250
+ Q + + +
Sbjct: 257 IPQETLNQISAGRER 271
>sp|P53815|SSRA_RABIT Translocon-associated protein subunit alpha OS=Oryctolagus
cuniculus GN=SSR1 PE=2 SV=1
Length = 286
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 15/210 (7%)
Query: 55 GTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL 114
G +P DT +F K A LVG N G V ++ AS P D+
Sbjct: 75 GEPEASPSADTTILFVKGED--FPANNIVRFLVGFTNKGTEDFIVESLDASFRYPQDYQF 132
Query: 115 LVQNLTGQAFNNATVPVSAQATFPIHFCCQQP---GTFDLVGSIVY-EVDQHPYQSTFYN 170
+QN T N VP QATF F +P F LV ++ Y + + + +Q +N
Sbjct: 133 YIQNFTALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDFNGNVFQDAVFN 191
Query: 171 GTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDA 230
T+ V+E + +++F+ + +A L L + Q+ + + + KVE+GT + +
Sbjct: 192 QTVTVIEREDGLDGQTIFMY-MSLAGLGLLVVVGLHQLLESRNRKRPIQKVEMGTSSQND 250
Query: 231 SMDEWLQ-------GTAYTQSLSSKSKKKK 253
W+ A + L K +K+
Sbjct: 251 VDMSWIPQETLNQINKASPRRLPRKRPQKR 280
>sp|Q7VVJ8|QUEE_BORPE 7-carboxy-7-deazaguanine synthase OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=queE PE=3 SV=1
Length = 210
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 54 DGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHS 113
+GTL P PG+D +C+ PK A VV LV + D +A HL F+H
Sbjct: 118 NGTLPPPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARP-------EAFAHLAFEHF 170
Query: 114 LLVQNLTGQAFNNATVPVSAQATFPIHFCCQQP 146
L Q + G A +A T + +C P
Sbjct: 171 FL-QPMDGPA-------RAAHTTQAVQYCLDHP 195
>sp|Q6DNF7|GCY32_CAEEL Soluble guanylate cyclase gcy-32 OS=Caenorhabditis elegans
GN=gcy-32 PE=2 SV=1
Length = 684
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 105 SVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYEV 159
S+H DH + NL G +F P T +H+ +PG + +V +V EV
Sbjct: 103 SLHYFIDHVVYKANLRGPSFRCEETP---DGTLLLHYFTGRPGLYHIVKGVVKEV 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,954,194
Number of Sequences: 539616
Number of extensions: 3731862
Number of successful extensions: 9487
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9459
Number of HSP's gapped (non-prelim): 15
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)