Query 036697
Match_columns 253
No_of_seqs 132 out of 186
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1631 Translocon-associated 100.0 2.1E-70 4.5E-75 479.6 14.1 240 5-247 2-245 (261)
2 PF03896 TRAP_alpha: Transloco 100.0 3.8E-68 8.2E-73 485.5 24.1 209 35-246 46-266 (285)
3 PF05753 TRAP_beta: Translocon 97.4 0.007 1.5E-07 52.6 14.3 87 75-165 32-122 (181)
4 PF10633 NPCBM_assoc: NPCBM-as 97.2 0.0022 4.7E-08 47.6 7.4 73 78-157 2-77 (78)
5 PF07760 DUF1616: Protein of u 95.7 0.26 5.7E-06 45.4 13.1 90 76-168 186-282 (287)
6 PF07705 CARDB: CARDB; InterP 94.3 0.92 2E-05 33.7 10.3 84 61-157 2-85 (101)
7 PF12690 BsuPI: Intracellular 94.2 0.29 6.3E-06 37.2 7.4 64 83-152 2-81 (82)
8 PF06159 DUF974: Protein of un 92.5 1.1 2.5E-05 40.6 9.8 88 74-162 7-100 (249)
9 PF14874 PapD-like: Flagellar- 91.7 3.4 7.3E-05 31.4 10.3 83 75-168 14-97 (102)
10 PF13473 Cupredoxin_1: Cupredo 91.4 0.73 1.6E-05 35.7 6.3 55 74-151 36-90 (104)
11 PF11044 TMEMspv1-c74-12: Plec 91.0 0.12 2.5E-06 35.4 1.2 29 185-213 6-34 (49)
12 COG1470 Predicted membrane pro 89.9 5.6 0.00012 39.7 12.1 85 75-166 391-480 (513)
13 PF07610 DUF1573: Protein of u 89.1 1.6 3.6E-05 29.1 5.6 44 87-141 2-45 (45)
14 PF06030 DUF916: Bacterial pro 88.5 5.1 0.00011 32.5 9.3 78 65-143 3-103 (121)
15 PF06280 DUF1034: Fn3-like dom 86.7 13 0.00029 28.9 10.5 86 80-167 7-110 (112)
16 PF04744 Monooxygenase_B: Mono 86.4 4.3 9.4E-05 39.2 8.7 92 78-171 260-375 (381)
17 PF00927 Transglut_C: Transglu 83.6 6.1 0.00013 30.5 7.1 73 76-152 10-85 (107)
18 PF07919 Gryzun: Gryzun, putat 83.5 42 0.0009 33.0 14.6 94 60-158 172-282 (554)
19 KOG3317 Translocon-associated 83.3 31 0.00066 30.2 12.2 126 78-208 39-173 (188)
20 PF11906 DUF3426: Protein of u 80.7 12 0.00026 30.5 8.2 74 79-152 66-147 (149)
21 PF10731 Anophelin: Thrombin i 79.7 2.8 6E-05 30.5 3.5 17 1-17 1-17 (65)
22 PF07172 GRP: Glycine rich pro 79.1 1.3 2.9E-05 34.7 1.9 12 1-12 1-12 (95)
23 smart00557 IG_FLMN Filamin-typ 76.8 28 0.00061 26.2 8.7 77 77-169 14-91 (93)
24 PF11611 DUF4352: Domain of un 76.7 12 0.00027 28.9 6.8 74 78-153 33-112 (123)
25 PF04442 CtaG_Cox11: Cytochrom 75.4 18 0.00038 30.8 7.8 72 70-143 56-127 (152)
26 PF04314 DUF461: Protein of un 74.7 21 0.00046 28.1 7.7 59 80-138 13-74 (110)
27 PF07919 Gryzun: Gryzun, putat 74.6 39 0.00084 33.3 11.2 89 60-152 9-115 (554)
28 PF09624 DUF2393: Protein of u 71.3 27 0.00058 28.7 7.9 78 77-155 58-146 (149)
29 PRK02710 plastocyanin; Provisi 71.1 14 0.00029 29.6 5.9 23 74-100 48-70 (119)
30 PF05568 ASFV_J13L: African sw 71.1 2.6 5.6E-05 36.0 1.7 32 169-203 14-45 (189)
31 PF14524 Wzt_C: Wzt C-terminal 70.9 48 0.001 25.8 11.8 78 75-155 29-107 (142)
32 PF12742 Gryzun-like: Gryzun, 70.3 4.9 0.00011 28.9 2.7 35 114-151 18-52 (57)
33 PF05506 DUF756: Domain of unk 69.8 44 0.00096 25.0 9.5 57 84-154 21-77 (89)
34 COG1361 S-layer domain [Cell e 66.0 41 0.00088 33.0 9.2 85 75-166 161-253 (500)
35 TIGR03079 CH4_NH3mon_ox_B meth 64.3 38 0.00082 33.0 8.2 89 78-168 279-391 (399)
36 PF02883 Alpha_adaptinC2: Adap 64.0 65 0.0014 24.8 8.5 78 78-162 21-103 (115)
37 PRK05089 cytochrome C oxidase 62.7 29 0.00063 30.6 6.6 78 74-157 87-169 (188)
38 PF00630 Filamin: Filamin/ABP2 60.8 28 0.00061 25.9 5.6 82 76-164 16-100 (101)
39 PRK05461 apaG CO2+/MG2+ efflux 60.3 95 0.0021 25.5 9.7 81 84-167 32-114 (127)
40 PRK15211 fimbrial chaperone pr 56.8 46 0.001 29.9 7.1 16 2-17 3-18 (229)
41 COG4743 Predicted membrane pro 55.6 35 0.00075 31.7 6.1 84 75-165 218-307 (316)
42 PRK13183 psbN photosystem II r 55.1 12 0.00026 25.7 2.3 32 182-213 4-35 (46)
43 PF13598 DUF4139: Domain of un 53.3 1.2E+02 0.0026 27.6 9.5 83 57-143 214-313 (317)
44 PF09451 ATG27: Autophagy-rela 52.7 15 0.00032 33.6 3.3 28 186-213 201-228 (268)
45 PF08114 PMP1_2: ATPase proteo 52.7 8.7 0.00019 25.9 1.3 21 191-211 16-36 (43)
46 smart00809 Alpha_adaptinC2 Ada 52.5 98 0.0021 23.2 13.0 91 61-165 5-95 (104)
47 PF03032 Brevenin: Brevenin/es 52.4 6.8 0.00015 26.9 0.8 18 2-19 2-19 (46)
48 TIGR01165 cbiN cobalt transpor 52.2 9.6 0.00021 29.8 1.7 24 1-24 1-25 (91)
49 PF09478 CBM49: Carbohydrate b 50.5 91 0.002 23.0 6.8 55 83-140 19-78 (80)
50 PF15240 Pro-rich: Proline-ric 49.6 26 0.00056 30.7 4.2 9 22-30 12-20 (179)
51 COG1470 Predicted membrane pro 48.4 1.2E+02 0.0026 30.6 9.0 77 75-157 278-360 (513)
52 TIGR02231 conserved hypothetic 48.2 1.4E+02 0.0031 29.6 9.7 86 57-146 413-519 (525)
53 PRK02898 cobalt transport prot 46.9 11 0.00024 30.0 1.3 26 1-26 1-26 (100)
54 COG5035 CDC50 Cell cycle contr 46.9 43 0.00092 32.0 5.4 58 144-208 293-354 (372)
55 PF03896 TRAP_alpha: Transloco 46.6 37 0.00081 31.7 5.0 73 176-252 203-277 (285)
56 PF08194 DIM: DIM protein; In 45.5 14 0.00031 24.1 1.4 14 3-17 1-14 (36)
57 PTZ00128 cytochrome c oxidase 45.0 73 0.0016 29.0 6.4 65 74-143 131-198 (232)
58 PF06586 TraK: TraK protein; 44.1 2.1E+02 0.0045 25.1 9.3 15 5-19 2-16 (234)
59 PF08374 Protocadherin: Protoc 44.0 21 0.00046 32.2 2.8 19 232-250 79-98 (221)
60 PF13584 BatD: Oxygen toleranc 43.8 2.2E+02 0.0047 27.7 10.1 103 62-175 272-381 (484)
61 PF02468 PsbN: Photosystem II 43.3 29 0.00063 23.5 2.7 28 186-213 5-32 (43)
62 COG3354 FlaG Putative archaeal 42.9 86 0.0019 26.7 6.1 34 79-112 66-105 (154)
63 PF11797 DUF3324: Protein of u 41.7 1.9E+02 0.0042 23.6 9.7 102 60-176 27-130 (140)
64 PF08626 TRAPPC9-Trs120: Trans 41.2 2.8E+02 0.0061 30.8 11.4 82 58-142 776-878 (1185)
65 PF00553 CBM_2: Cellulose bind 40.9 1.2E+02 0.0026 23.3 6.4 24 119-143 61-84 (101)
66 PF04379 DUF525: Protein of un 40.9 1.2E+02 0.0027 23.3 6.4 57 84-143 15-71 (90)
67 CHL00020 psbN photosystem II p 39.4 22 0.00049 24.1 1.7 29 185-213 4-32 (43)
68 COG5633 Predicted periplasmic 39.4 2.2E+02 0.0047 23.5 9.1 64 85-154 58-122 (123)
69 PRK13202 ureB urease subunit b 39.3 52 0.0011 26.4 4.0 30 71-100 9-38 (104)
70 PRK10378 inactive ferrous ion 39.2 1.3E+02 0.0029 29.2 7.6 57 75-152 46-102 (375)
71 PLN02171 endoglucanase 37.8 1.4E+02 0.003 31.0 7.9 73 80-157 552-627 (629)
72 PF05753 TRAP_beta: Translocon 36.1 1E+02 0.0022 26.8 5.8 34 76-109 82-115 (181)
73 PF07129 DUF1381: Protein of u 35.7 73 0.0016 21.7 3.7 23 158-180 10-35 (44)
74 PF13956 Ibs_toxin: Toxin Ibs, 34.5 24 0.00053 19.7 1.0 15 3-17 1-15 (19)
75 PF04689 S1FA: DNA binding pro 34.4 23 0.0005 26.1 1.3 13 180-192 8-20 (69)
76 PRK11372 lysozyme inhibitor; P 34.1 28 0.0006 27.8 1.8 16 1-16 1-16 (109)
77 PRK11385 putativi pili assembl 33.5 1.4E+02 0.003 27.0 6.4 19 1-19 1-19 (236)
78 TIGR00192 urease_beta urease, 33.4 75 0.0016 25.4 4.1 29 71-100 9-37 (101)
79 PF06679 DUF1180: Protein of u 33.1 38 0.00082 29.2 2.6 19 190-208 99-117 (163)
80 PRK13203 ureB urease subunit b 32.9 78 0.0017 25.3 4.1 30 70-100 8-37 (102)
81 PF07172 GRP: Glycine rich pro 32.8 18 0.00039 28.3 0.6 14 8-21 5-18 (95)
82 PF07680 DoxA: TQO small subun 32.7 63 0.0014 26.9 3.8 49 113-165 79-128 (133)
83 TIGR02205 septum_zipA cell div 32.6 33 0.0007 32.1 2.3 21 190-210 5-25 (284)
84 PHA03049 IMV membrane protein; 31.9 60 0.0013 24.0 3.1 22 187-208 5-26 (68)
85 TIGR03096 nitroso_cyanin nitro 31.5 1.2E+02 0.0027 25.3 5.3 48 71-139 59-106 (135)
86 PF03381 CDC50: LEM3 (ligand-e 31.3 1.6E+02 0.0034 27.2 6.5 39 144-189 206-245 (278)
87 PRK13736 conjugal transfer pro 30.0 4.3E+02 0.0092 24.0 10.2 45 76-124 42-89 (245)
88 PRK15098 beta-D-glucoside gluc 28.7 1.7E+02 0.0036 30.9 6.9 57 78-143 664-727 (765)
89 PF00699 Urease_beta: Urease b 28.3 86 0.0019 25.0 3.6 25 75-100 12-36 (100)
90 COG0832 UreB Urea amidohydrola 28.2 90 0.002 25.0 3.7 30 70-100 8-37 (106)
91 PF11614 FixG_C: IG-like fold 27.6 2.9E+02 0.0064 21.4 9.9 72 76-157 25-102 (118)
92 PF10183 ESSS: ESSS subunit of 27.3 67 0.0014 25.4 2.9 30 177-206 52-81 (105)
93 COG2967 ApaG Uncharacterized p 27.1 3.6E+02 0.0079 22.3 8.7 81 85-167 32-113 (126)
94 PF14962 AIF-MLS: Mitochondria 26.7 21 0.00046 31.2 0.0 29 181-209 40-68 (180)
95 PRK13201 ureB urease subunit b 26.6 1.1E+02 0.0023 25.7 4.0 29 71-100 9-37 (136)
96 smart00676 DM10 Domains in hyp 26.6 98 0.0021 24.4 3.8 23 162-184 22-49 (104)
97 PRK10386 curli assembly protei 26.4 56 0.0012 27.2 2.4 17 3-19 1-18 (130)
98 PRK13528 outer membrane recept 26.3 39 0.00084 34.5 1.8 19 1-19 3-21 (727)
99 COG3167 PilO Tfp pilus assembl 26.3 72 0.0016 28.5 3.2 25 182-207 21-45 (211)
100 PF10622 Ehbp: Energy-converti 26.3 14 0.00031 27.9 -1.0 10 230-239 39-48 (78)
101 PF12273 RCR: Chitin synthesis 25.5 53 0.0012 26.5 2.1 15 187-201 4-18 (130)
102 cd00407 Urease_beta Urease bet 25.4 1.2E+02 0.0026 24.2 4.0 25 75-100 13-37 (101)
103 PLN02604 oxidoreductase 24.9 1.1E+02 0.0024 31.0 4.7 17 75-93 57-73 (566)
104 smart00737 ML Domain involved 24.7 2E+02 0.0042 22.3 5.2 86 78-170 22-115 (118)
105 KOG2357 Uncharacterized conser 24.4 86 0.0019 31.0 3.6 16 3-18 1-16 (440)
106 PF07732 Cu-oxidase_3: Multico 24.3 1E+02 0.0022 24.5 3.5 63 75-149 28-93 (117)
107 PF06522 B12D: NADH-ubiquinone 24.3 73 0.0016 23.5 2.5 28 181-208 1-28 (73)
108 PF05961 Chordopox_A13L: Chord 24.3 1E+02 0.0022 22.9 3.1 22 187-208 5-26 (68)
109 KOG2291 Oligosaccharyltransfer 23.3 2.4E+02 0.0052 29.0 6.6 17 57-73 58-74 (602)
110 PF02950 Conotoxin: Conotoxin; 23.2 27 0.00059 25.1 0.0 15 4-18 1-15 (75)
111 PF14016 DUF4232: Protein of u 23.0 3.7E+02 0.0081 21.3 6.7 63 78-143 16-82 (131)
112 KOG2952 Cell cycle control pro 22.9 1.5E+02 0.0033 28.6 4.9 52 144-202 272-327 (351)
113 PRK13204 ureB urease subunit b 22.7 1.4E+02 0.0029 25.7 4.0 30 70-100 31-60 (159)
114 PF10342 GPI-anchored: Ser-Thr 22.7 2.6E+02 0.0056 20.2 5.3 37 75-111 7-43 (93)
115 PF02221 E1_DerP2_DerF2: ML do 22.4 3.7E+02 0.0081 20.8 9.9 96 76-175 27-134 (134)
116 PHA03105 EEV glycoprotein; Pro 22.0 33 0.00072 29.7 0.3 24 185-208 3-29 (188)
117 PRK13205 ureB urease subunit b 22.0 1.4E+02 0.0031 25.6 4.0 26 74-100 12-37 (162)
118 PRK10677 modA molybdate transp 21.9 71 0.0015 28.6 2.4 19 1-19 1-19 (257)
119 PF05545 FixQ: Cbb3-type cytoc 21.9 1.2E+02 0.0026 20.3 3.0 15 192-206 17-31 (49)
120 PF14283 DUF4366: Domain of un 21.6 5.9E+02 0.013 22.8 9.1 27 4-31 1-27 (218)
121 TIGR02656 cyanin_plasto plasto 21.6 3.4E+02 0.0074 20.5 5.9 64 74-150 18-81 (99)
122 PF10828 DUF2570: Protein of u 21.0 96 0.0021 24.5 2.7 21 188-208 4-24 (110)
123 PF11714 Inhibitor_I53: Thromb 20.7 1.5E+02 0.0032 22.3 3.4 21 3-25 1-21 (78)
124 PF02553 CbiN: Cobalt transpor 20.7 59 0.0013 24.5 1.4 20 3-22 1-20 (74)
125 PRK01904 hypothetical protein; 20.7 2.1E+02 0.0046 25.3 5.2 16 75-90 51-66 (219)
126 PF08139 LPAM_1: Prokaryotic m 20.7 73 0.0016 19.1 1.5 15 3-17 7-21 (25)
127 PF01788 PsbJ: PsbJ; InterPro 20.6 1.5E+02 0.0032 19.8 3.0 20 191-210 16-35 (40)
128 PF14646 MYCBPAP: MYCBP-associ 20.6 5E+02 0.011 25.2 8.1 88 78-171 244-342 (426)
129 PRK13198 ureB urease subunit b 20.3 1.6E+02 0.0035 25.3 4.0 30 70-100 36-65 (158)
No 1
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-70 Score=479.64 Aligned_cols=240 Identities=39% Similarity=0.521 Sum_probs=223.3
Q ss_pred hhHHHHHHHHHhhhcccceeeccCccccCccccccCccccccCCCccCCCCCCCCCCCeeEEEEccCCCcceeeCCceEE
Q 036697 5 NFRVFFFALLLLASPLLQVAKCQSDSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETE 84 (253)
Q Consensus 5 ~~~~~~~~~~ll~s~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~sP~v~t~~~Fp~~~~~~l~nG~~~~ 84 (253)
.|++|.+..+++++|+.++|+||+|-+||.+++|++|+.+++||++++. .+.+||+++|.++||++....+|+|++++
T Consensus 2 ~L~Vl~l~~l~~~ap~~~~A~~~~~~eDD~v~~e~tddAv~eed~d~Dl--~~~asP~adt~~lF~k~s~~~~pagk~vk 79 (261)
T KOG1631|consen 2 MLMVLPLSTLFLLAPLGFCAVAAADVEDDLVDGEVTDDAVKEEDEDDDL--TIDASPDADTAFLFVKPSDANFPAGKPVK 79 (261)
T ss_pred ceehhHHHHHHHhCchhhhhHHHhhcccccccccccccccccccccccc--cccCCCCCCeEEEecccccccCCCCCceE
Confidence 3678899999999999999999988888888889999888766665543 36699999999999999998899999999
Q ss_pred EEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceEeEEEEEEE-EeC
Q 036697 85 LLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTFDLVGSIVY-EVD 160 (253)
Q Consensus 85 ~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~~L~i~l~y-d~~ 160 (253)
+||||+|+|.++|.|.++++|||||+||+++|||||+.+|| ++|||+.|+||+|.|.+ |+||+|+|+++++| |++
T Consensus 80 fLiGftNkG~edfvV~~~eaSfr~P~D~~~~iQNft~~~~N-~~Vpp~~qaT~~Y~F~~se~~~grpFgLv~~i~Y~D~d 158 (261)
T KOG1631|consen 80 FLIGFTNKGEEDFVVEYAEASFRYPTDHSYHIQNFTALEYN-RSVPPSEQATLPYGFAVSETFAGRPFGLVGNIIYQDAD 158 (261)
T ss_pred EEEEeccCCceeEEEEEEeeeeecCccHHHHHhhhhhhhcc-ccCCCcceeeeeeeeeehhhcCCCccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999 89999999999999999 99999999999999 999
Q ss_pred CceEEEeeecceEEEEeCCCCcChhHHHHHHHHHHHHHHHHHHhhheeecccccccCCCcccccCCCCCCCCCCcccccc
Q 036697 161 QHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTA 240 (253)
Q Consensus 161 g~~y~~~~fN~TVtVvE~~s~fD~e~iFLyl~lla~~~~~gy~vy~~~~~~~kk~kka~kve~gT~~~~~~d~eWIP~~h 240 (253)
|++||..+|||||+|+|.+++||+|++|||++++|+..++++|.++.+.+++||+||++|||+||++.++.|+||||+++
T Consensus 159 G~~yq~~vyN~TI~VvE~~~gl~GETvFL~~lligl~llllv~~~q~L~~~sKk~~~~~kVE~GTas~~~vd~eWip~~t 238 (261)
T KOG1631|consen 159 GNVYQSAVYNQTIEVVEDDSGLSGETVFLYILLIGLSLLLLVLSQQFLSKLSKKTKKRRKVEVGTASKDAVDDEWIPGTT 238 (261)
T ss_pred CCchhhhhccceEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccceEeecccCcccccccccccHh
Confidence 99999999999999999999999999999999999999999887766667778888889999999998899999999999
Q ss_pred ccccCCC
Q 036697 241 YTQSLSS 247 (253)
Q Consensus 241 l~~~~~~ 247 (253)
++|+.|+
T Consensus 239 l~q~~k~ 245 (261)
T KOG1631|consen 239 LKQKSKR 245 (261)
T ss_pred HHhhccC
Confidence 9998885
No 2
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=100.00 E-value=3.8e-68 Score=485.51 Aligned_cols=209 Identities=37% Similarity=0.555 Sum_probs=184.0
Q ss_pred cccccCccccccCC----C----ccCCCCCCCCCCCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeee
Q 036697 35 AETEGGDLGIVGED----A----QDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASV 106 (253)
Q Consensus 35 ~~~e~~d~~~~~~~----~----~~~~~~~~~~sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf 106 (253)
+++|++|+.+++|| . ++++++++++||+++|+++||++ ..+||||+++++||||+|+|+++++|.+|.|||
T Consensus 46 ~~~e~~d~~~~~ed~~~~~e~~dd~~e~~~~~~sP~adt~~~F~~~-~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl 124 (285)
T PF03896_consen 46 VEEEEEDEAEVEEDESIETEVEDDDEEDGELKPSPDADTTILFPKP-TKKLPAGEPVKFLVGFTNKGSEPFTVESIEASL 124 (285)
T ss_pred ccccccccceecccCCCCCcccccccccccccccCCceEEEEeccc-cccccCCCeEEEEEEEEeCCCCCEEEEEEeeee
Confidence 34455565565544 1 11122468999999999999999 789999999999999999999999999999999
Q ss_pred ccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceEeEEEEEEE-EeCCceEEEeeecceEEEEeCCCCc
Q 036697 107 HLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFI 182 (253)
Q Consensus 107 ~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~~L~i~l~y-d~~g~~y~~~~fN~TVtVvE~~s~f 182 (253)
|+|+||+++|||||+++|+ +.|+||+++||+|+|.| |+||+|+|+++++| |.+|+.|++++||+||+|||++++|
T Consensus 125 ~~p~d~~~~iqNfTa~~y~-~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d~~g~~y~~~~fN~TV~IvE~~~~~ 203 (285)
T PF03896_consen 125 RYPQDYSYYIQNFTAVRYN-REVPPGEEATFPYSFTPSEELAPRPFGLVINLIYEDSDGNQYQVTVFNGTVTIVEPESGF 203 (285)
T ss_pred cCccccceEEEeecccccC-cccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEeCCCCEEEEEEecceEEEeecCCCc
Confidence 9999999999999999999 89999999999999999 99999999999999 8999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhheeecccccccCCCcccccCCCCCCCCCCccccccccccCC
Q 036697 183 SIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTAYTQSLS 246 (253)
Q Consensus 183 D~e~iFLyl~lla~~~~~gy~vy~~~~~~~kk~kka~kve~gT~~~~~~d~eWIP~~hl~~~~~ 246 (253)
|||+||||+||+|++++++|++|+.+.. .+|+|+++|||+||++.++||+||||+|||+|++|
T Consensus 204 D~e~iFLY~~l~a~~~l~l~~~~~~l~~-~~kkr~~~~VE~GT~~~~~~D~eWIp~~~l~~~~k 266 (285)
T PF03896_consen 204 DPETIFLYLFLAALGVLGLYFVYQFLPS-SKKKRKAKKVETGTSSTNDVDEEWIPKEHLNRPNK 266 (285)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHh-ccccccCCcccCCCCCCCCCCcccCCHHHhhhccC
Confidence 9999999999999988888877765543 34445578899999998889999999999997544
No 3
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=97.40 E-value=0.007 Score=52.61 Aligned_cols=87 Identities=18% Similarity=0.319 Sum_probs=67.6
Q ss_pred ceeeCCceEEEEEEEEeCCCCc-EEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEE-
Q 036697 75 RVVAAGEETELLVGMKNDGESS-VNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLV- 152 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~-~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~- 152 (253)
.-++.|+.+.+-+.+.|.|+.+ +.|...+.+| .|++| .++.-.+..++. .|+||+..+..|.-.|...|.|.+.
T Consensus 32 ~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~f-p~~~F-~lvsG~~s~~~~--~i~pg~~vsh~~vv~p~~~G~f~~~~ 107 (181)
T PF05753_consen 32 KYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSF-PPEDF-ELVSGSLSASWE--RIPPGENVSHSYVVRPKKSGYFNFTP 107 (181)
T ss_pred ccccCCcEEEEEEEEEECCCCeEEEEEEECCCC-Ccccc-EeccCceEEEEE--EECCCCeEEEEEEEeeeeeEEEEccC
Confidence 4678999999999999999966 5588888788 34566 557777777775 7999999999999999888888877
Q ss_pred EEEEE-EeCC-ceEE
Q 036697 153 GSIVY-EVDQ-HPYQ 165 (253)
Q Consensus 153 i~l~y-d~~g-~~y~ 165 (253)
..+.| +.++ ..-|
T Consensus 108 a~VtY~~~~~~~~~~ 122 (181)
T PF05753_consen 108 AVVTYRDSEGAKELQ 122 (181)
T ss_pred EEEEEECCCCCceeE
Confidence 45666 5544 4433
No 4
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=97.16 E-value=0.0022 Score=47.56 Aligned_cols=73 Identities=18% Similarity=0.365 Sum_probs=45.5
Q ss_pred eCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceEeEEEE
Q 036697 78 AAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTFDLVGS 154 (253)
Q Consensus 78 ~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~~L~i~ 154 (253)
.+|+.+++-+.++|.|..++.-. .=++..|.....-... ... ..|+||++.++.+...+ -.+|+|.|.+.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v--~~~l~~P~GW~~~~~~---~~~--~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNV--SLSLSLPEGWTVSASP---ASV--PSLPPGESVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS---EEEEE--TTSE---EE---EEE----B-TTSEEEEEEEEEE-TT--SEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeE--EEEEeCCCCccccCCc---ccc--ccCCCCCEEEEEEEEECCCCCCCceEEEEEE
Confidence 57999999999999998775433 3344458887522222 222 26999999999999999 88999999998
Q ss_pred EEE
Q 036697 155 IVY 157 (253)
Q Consensus 155 l~y 157 (253)
+-|
T Consensus 75 a~y 77 (78)
T PF10633_consen 75 ARY 77 (78)
T ss_dssp EE-
T ss_pred EEe
Confidence 876
No 5
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=95.71 E-value=0.26 Score=45.41 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=64.3
Q ss_pred eeeCCceEEEEEEEEeCCC--CcEEEE-EEeeeeccccccCeeEeecccc-ccCCeeecCCCceEEeEEeee-eCCceEe
Q 036697 76 VVAAGEETELLVGMKNDGE--SSVNVI-AIQASVHLPFDHSLLVQNLTGQ-AFNNATVPVSAQATFPIHFCC-QQPGTFD 150 (253)
Q Consensus 76 ~l~nG~~~~~lvg~~N~g~--~~~~V~-~i~gSf~~P~d~~~~vqNfTa~-~~~~~~V~pg~~atf~Y~F~~-l~p~~~~ 150 (253)
++..|++.++-|++.|++. ..++++ .+.+....|.+ ..+.+-+.. ++. ..+..|++.+.+|.|.+ +.+...+
T Consensus 186 ~l~~ge~~~v~vgI~NhE~~~~~Ytv~v~l~~~~~~~~~--~~~~~~~~l~~~~-~~L~~n~t~~~~~~~~~~~~~~~~~ 262 (287)
T PF07760_consen 186 NLTSGEPGTVIVGIENHEGRPENYTVVVVLQNVTWNPNN--YNVMESTVLDRPI-VTLADNETWEQPYKFTPFITGENPR 262 (287)
T ss_pred eEEcCCcEEEEEEEEcCCCCcEEEEEEEEEecccccccc--ccccchhcccceE-EEeCCCCeEEEEEEEEEecCCCceE
Confidence 6899999999999999995 455555 45555555543 233333222 233 47888999999999999 7777888
Q ss_pred EEEEEEEE--eCCceEEEee
Q 036697 151 LVGSIVYE--VDQHPYQSTF 168 (253)
Q Consensus 151 L~i~l~yd--~~g~~y~~~~ 168 (253)
+...++.+ ...+.|+...
T Consensus 263 l~~lLY~~~~~~~~ayr~~~ 282 (287)
T PF07760_consen 263 LEYLLYKGGVNSENAYRSLH 282 (287)
T ss_pred EEEEEEcCCCCcchheeEEE
Confidence 88877774 4667777654
No 6
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=94.27 E-value=0.92 Score=33.69 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=47.2
Q ss_pred CCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEE
Q 036697 61 PGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIH 140 (253)
Q Consensus 61 P~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~ 140 (253)
||..+...... .....|++.++-+.++|.|..+.. .+.-.|.. .+ ..+... .. ..++||++.++.+.
T Consensus 2 pDL~v~~~~~~---~~~~~g~~~~i~~~V~N~G~~~~~--~~~v~~~~-~~--~~~~~~---~i--~~L~~g~~~~v~~~ 68 (101)
T PF07705_consen 2 PDLTVSITVSP---SNVVPGEPVTITVTVKNNGTADAE--NVTVRLYL-DG--NSVSTV---TI--PSLAPGESETVTFT 68 (101)
T ss_dssp --EEE-EEEC----SEEETTSEEEEEEEEEE-SSS-BE--EEEEEEEE-TT--EEEEEE---EE--SEB-TTEEEEEEEE
T ss_pred CCEEEEEeeCC---CcccCCCEEEEEEEEEECCCCCCC--CEEEEEEE-CC--ceeccE---EE--CCcCCCcEEEEEEE
Confidence 67776333322 367899999999999999986522 12222221 11 112111 11 26899999999988
Q ss_pred eeeeCCceEeEEEEEEE
Q 036697 141 FCCQQPGTFDLVGSIVY 157 (253)
Q Consensus 141 F~~l~p~~~~L~i~l~y 157 (253)
+.+-.+|.|.|.+.+.+
T Consensus 69 ~~~~~~G~~~i~~~iD~ 85 (101)
T PF07705_consen 69 WTPPSPGSYTIRVVIDP 85 (101)
T ss_dssp EE-SS-CEEEEEEEEST
T ss_pred EEeCCCCeEEEEEEEee
Confidence 88878898886655543
No 7
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=94.18 E-value=0.29 Score=37.17 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=37.7
Q ss_pred EEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEee--------------ccccccCCeeecCCCceEEeEEeee--eCC
Q 036697 83 TELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQN--------------LTGQAFNNATVPVSAQATFPIHFCC--QQP 146 (253)
Q Consensus 83 ~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqN--------------fTa~~~~~~~V~pg~~atf~Y~F~~--l~p 146 (253)
+++.+.++|++++++++.+=.|.- +++.|.| ||..--. ..++||++.++...... +.|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~-----~D~~v~d~~g~~vwrwS~~~~FtQal~~-~~l~pGe~~~~~~~~~~~~~~~ 75 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQR-----YDFVVKDKEGKEVWRWSDGKMFTQALQE-ETLEPGESLTYEETWDLKDLSP 75 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS-------EEEEEE-TT--EEEETTTT-------EE-EEE-TT-EEEEEEEESS----S
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCE-----EEEEEECCCCCEEEEecCCchhhheeeE-EEECCCCEEEEEEEECCCCCCC
Confidence 478899999999999987655532 2223332 2222223 78999999999988877 569
Q ss_pred ceEeEE
Q 036697 147 GTFDLV 152 (253)
Q Consensus 147 ~~~~L~ 152 (253)
|.|.|.
T Consensus 76 G~Y~~~ 81 (82)
T PF12690_consen 76 GEYTLE 81 (82)
T ss_dssp EEEEEE
T ss_pred ceEEEe
Confidence 999875
No 8
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=92.54 E-value=1.1 Score=40.57 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=69.7
Q ss_pred cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccc--cCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeE
Q 036697 74 ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFD--HSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDL 151 (253)
Q Consensus 74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d--~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L 151 (253)
.+.++-||.-.+.|.+.|....++.-..|.+.+..|.. .-....|-....-. ..+.||+..++-.+|-.=..|.+.|
T Consensus 7 fG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~-~~L~p~~~l~~iv~~~lkE~G~h~L 85 (249)
T PF06159_consen 7 FGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPV-ASLAPGESLDFIVSHELKELGNHTL 85 (249)
T ss_pred cCCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccc-cccCCCCeEeEEEEEEeeecCceEE
Confidence 36889999999999999999999999999999999976 21223332221111 3689999999988888888999999
Q ss_pred EEEEEE-Ee---CCc
Q 036697 152 VGSIVY-EV---DQH 162 (253)
Q Consensus 152 ~i~l~y-d~---~g~ 162 (253)
+..|.| +. +|.
T Consensus 86 ~c~VsY~~~~~~~g~ 100 (249)
T PF06159_consen 86 VCTVSYTDPTETSGE 100 (249)
T ss_pred EEEEEEecCcccCCc
Confidence 999999 77 563
No 9
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=91.75 E-value=3.4 Score=31.40 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=58.2
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee-eCCceEeEEE
Q 036697 75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC-QQPGTFDLVG 153 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~-l~p~~~~L~i 153 (253)
+.+.-|+....-+.++|.+..+.....- .|...+ ..|+.. +....|.||++.++.-.|.| -..|+|.-.+
T Consensus 14 G~v~~g~~~~~~v~l~N~s~~p~~f~v~-----~~~~~~---~~~~v~-~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l 84 (102)
T PF14874_consen 14 GNVFVGQTYSRTVTLTNTSSIPARFRVR-----QPESLS---SFFSVE-PPSGFLAPGESVELEVTFSPTKPLGDYEGSL 84 (102)
T ss_pred eEEccCCEEEEEEEEEECCCCCEEEEEE-----eCCcCC---CCEEEE-CCCCEECCCCEEEEEEEEEeCCCCceEEEEE
Confidence 7889999999999999999988665532 233221 123322 33368999999999999997 7888887766
Q ss_pred EEEEEeCCceEEEee
Q 036697 154 SIVYEVDQHPYQSTF 168 (253)
Q Consensus 154 ~l~yd~~g~~y~~~~ 168 (253)
.+. .++..+.+++
T Consensus 85 ~i~--~e~~~~~i~v 97 (102)
T PF14874_consen 85 VIT--TEGGSFEIPV 97 (102)
T ss_pred EEE--ECCeEEEEEE
Confidence 554 4444555543
No 10
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=91.44 E-value=0.73 Score=35.66 Aligned_cols=55 Identities=18% Similarity=0.414 Sum_probs=32.0
Q ss_pred cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeE
Q 036697 74 ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDL 151 (253)
Q Consensus 74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L 151 (253)
...+++|++++ +.++|++..+-.+. +.+ .... ..++||++.++. |.|..||.|.+
T Consensus 36 ~i~v~~G~~v~--l~~~N~~~~~h~~~---------------i~~---~~~~-~~l~~g~~~~~~--f~~~~~G~y~~ 90 (104)
T PF13473_consen 36 TITVKAGQPVT--LTFTNNDSRPHEFV---------------IPD---LGIS-KVLPPGETATVT--FTPLKPGEYEF 90 (104)
T ss_dssp EEEEETTCEEE--EEEEE-SSS-EEEE---------------EGG---GTEE-EEE-TT-EEEEE--EEE-S-EEEEE
T ss_pred EEEEcCCCeEE--EEEEECCCCcEEEE---------------ECC---CceE-EEECCCCEEEEE--EcCCCCEEEEE
Confidence 45899999988 45789987753332 222 2233 578999887655 56678888763
No 11
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=91.05 E-value=0.12 Score=35.37 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhheeecccc
Q 036697 185 ESVFLVTLGIALLVLFGLWIHGQVKQLSK 213 (253)
Q Consensus 185 e~iFLyl~lla~~~~~gy~vy~~~~~~~k 213 (253)
.+||-.++++|+|+-+|..+|++..+.++
T Consensus 6 t~iFsvvIil~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 6 TTIFSVVIILGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999988765443
No 12
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.91 E-value=5.6 Score=39.68 Aligned_cols=85 Identities=15% Similarity=0.273 Sum_probs=66.9
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceEeE
Q 036697 75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTFDL 151 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~~L 151 (253)
..+.+|+...+-+.+.|.|..++ .-|.=++..||+.+-.|+-.|- ..++||+..+++-.... -.+|+|+.
T Consensus 391 lt~taGee~~i~i~I~NsGna~L--tdIkl~v~~PqgWei~Vd~~~I-----~sL~pge~~tV~ltI~vP~~a~aGdY~i 463 (513)
T COG1470 391 LTITAGEEKTIRISIENSGNAPL--TDIKLTVNGPQGWEIEVDESTI-----PSLEPGESKTVSLTITVPEDAGAGDYRI 463 (513)
T ss_pred EEecCCccceEEEEEEecCCCcc--ceeeEEecCCccceEEECcccc-----cccCCCCcceEEEEEEcCCCCCCCcEEE
Confidence 36788999999999999996554 4555578889998888887754 47999999998888886 89999999
Q ss_pred EEEEEEEe--CCceEEE
Q 036697 152 VGSIVYEV--DQHPYQS 166 (253)
Q Consensus 152 ~i~l~yd~--~g~~y~~ 166 (253)
.+.+-=|. .....++
T Consensus 464 ~i~~ksDq~s~e~tlrV 480 (513)
T COG1470 464 TITAKSDQASSEDTLRV 480 (513)
T ss_pred EEEEeeccccccceEEE
Confidence 88887752 3445555
No 13
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=89.06 E-value=1.6 Score=29.13 Aligned_cols=44 Identities=11% Similarity=0.307 Sum_probs=33.0
Q ss_pred EEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEe
Q 036697 87 VGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHF 141 (253)
Q Consensus 87 vg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F 141 (253)
+.|+|.|++++.|..|..|=-- .. ..+....|+||++..+...|
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgC------t~-----~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGC------TT-----AEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCC------EE-----eeCCcceECCCCEEEEEEEC
Confidence 5789999999999988877532 22 23333679999999887665
No 14
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=88.55 E-value=5.1 Score=32.48 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=53.1
Q ss_pred EEEEccCCCc--------ceeeCCceEEEEEEEEeCCCCcEEEE-EEeeeecccc------------c--cCeeEeeccc
Q 036697 65 TVCIFPKNSA--------RVVAAGEETELLVGMKNDGESSVNVI-AIQASVHLPF------------D--HSLLVQNLTG 121 (253)
Q Consensus 65 t~~~Fp~~~~--------~~l~nG~~~~~lvg~~N~g~~~~~V~-~i~gSf~~P~------------d--~~~~vqNfTa 121 (253)
+...+|+++. ..+..|+..++-+.++|+.+++++|. .+.-+..... | ..+-+.++..
T Consensus 3 V~p~~p~~Q~~~~~~YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~ 82 (121)
T PF06030_consen 3 VTPVLPENQIDKNVSYFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK 82 (121)
T ss_pred EeecCCccccCCCCCeEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc
Confidence 4456676643 46899999999999999999999986 3333333221 1 1134444544
Q ss_pred cccCCeeecCCCceEEeEEeee
Q 036697 122 QAFNNATVPVSAQATFPIHFCC 143 (253)
Q Consensus 122 ~~~~~~~V~pg~~atf~Y~F~~ 143 (253)
..-. .+|+|+++.++++....
T Consensus 83 ~~~~-Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 83 IPKE-VTLPPNESKTVTFTIKM 103 (121)
T ss_pred CCcE-EEECCCCEEEEEEEEEc
Confidence 4555 78999999999888764
No 15
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=86.67 E-value=13 Score=28.94 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=47.8
Q ss_pred CceEEEEEEEEeCCCCcEEE--EEEeeeeccc----cccCeeEeec------cccccCCeeecCCCceEEeEEeee---e
Q 036697 80 GEETELLVGMKNDGESSVNV--IAIQASVHLP----FDHSLLVQNL------TGQAFNNATVPVSAQATFPIHFCC---Q 144 (253)
Q Consensus 80 G~~~~~lvg~~N~g~~~~~V--~~i~gSf~~P----~d~~~~vqNf------Ta~~~~~~~V~pg~~atf~Y~F~~---l 144 (253)
|...++-|.++|.|+++.+- ... +.+..- ..+....++. +...-. .+|+||+++++...|.+ +
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vTV~ag~s~~v~vti~~p~~~ 84 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHV-PVLTDKTDTEEGYSILVPPVPSISTVSFSPDT-VTVPAGQSKTVTVTITPPSGL 84 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE--EEEEEE--ETTEEEEEEEE----EEE---EE-EEE-TTEEEEEEEEEE--GGG
T ss_pred CCceEEEEEEEECCCCCEEEEEeeE-EEEeeEeeccCCcccccccccceeeEEeCCCe-EEECCCCEEEEEEEEEehhcC
Confidence 44589999999999988664 333 233221 1122222222 222233 68999999999999998 4
Q ss_pred C-CceEeEEEEEEE-EeCCc-eEEEe
Q 036697 145 Q-PGTFDLVGSIVY-EVDQH-PYQST 167 (253)
Q Consensus 145 ~-p~~~~L~i~l~y-d~~g~-~y~~~ 167 (253)
. ++..-...++.. ..++. .++++
T Consensus 85 ~~~~~~~~eG~I~~~~~~~~~~lsIP 110 (112)
T PF06280_consen 85 DASNGPFYEGFITFKSSDGEPDLSIP 110 (112)
T ss_dssp HHTT-EEEEEEEEEESSTTSEEEEEE
T ss_pred CcccCCEEEEEEEEEcCCCCEEEEee
Confidence 3 455566788888 45555 55554
No 16
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=86.37 E-value=4.3 Score=39.20 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=56.2
Q ss_pred eCCceEEEEEEEEeCCCCcEEEE-EEeeeeccccc--------c-CeeEe--eccccccCCeeecCCCceEEeEEeee--
Q 036697 78 AAGEETELLVGMKNDGESSVNVI-AIQASVHLPFD--------H-SLLVQ--NLTGQAFNNATVPVSAQATFPIHFCC-- 143 (253)
Q Consensus 78 ~nG~~~~~lvg~~N~g~~~~~V~-~i~gSf~~P~d--------~-~~~vq--NfTa~~~~~~~V~pg~~atf~Y~F~~-- 143 (253)
+.|+..++-+.++|+|++++.+. +..|.+|..+- + +.++- -|+...- ..|.|||+.++.-.-.-
T Consensus 260 vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~--~pI~PGETrtl~V~a~dA~ 337 (381)
T PF04744_consen 260 VPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN--SPIAPGETRTLTVEAQDAA 337 (381)
T ss_dssp SSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES----S-B-TT-EEEEEEEEE-HH
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC--CCcCCCceEEEEEEeehhH
Confidence 67889999999999999999985 66776665431 1 11122 1333222 47999999999987753
Q ss_pred -----e----CCceEeEEEEEEE-EeCCceEEEeeecc
Q 036697 144 -----Q----QPGTFDLVGSIVY-EVDQHPYQSTFYNG 171 (253)
Q Consensus 144 -----l----~p~~~~L~i~l~y-d~~g~~y~~~~fN~ 171 (253)
| .--+-++-.-+++ |.+|+.|.+.+-..
T Consensus 338 WeveRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I~gp 375 (381)
T PF04744_consen 338 WEVERLSDLIYDPDSRFGGLLFFFDASGNRYISEIAGP 375 (381)
T ss_dssp HHHTTGGGGGGSSS-EEEEEEEEEETTS-EEEEEEEEE
T ss_pred HHHhhhhhhhcCcccceeEEEEEEcCCCCEEEEeccCc
Confidence 2 2235566666666 99999998877655
No 17
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=83.55 E-value=6.1 Score=30.54 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=47.5
Q ss_pred eeeCCceEEEEEEEEeCCCCc---EEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEE
Q 036697 76 VVAAGEETELLVGMKNDGESS---VNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLV 152 (253)
Q Consensus 76 ~l~nG~~~~~lvg~~N~g~~~---~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~ 152 (253)
..+-|++.++.+.|+|..+.+ +++....-+..|+.- ....+...... ..|+||++.++.-.+.|-+.|.-.+.
T Consensus 10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~---~~~~~~~~~~~-~~l~p~~~~~~~~~i~p~~yG~~~~l 85 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGL---TRDQFKKEKFE-VTLKPGETKSVEVTITPSQYGPKQLL 85 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTT---EEEEEEEEEEE-EEE-TTEEEEEEEEE-HHSHEEECCE
T ss_pred CccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCc---ccccEeEEEcc-eeeCCCCEEEEEEEEEceeEecchhc
Confidence 678999999999999998766 444455555555533 22344444555 79999999999999999555443333
No 18
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=83.46 E-value=42 Score=33.03 Aligned_cols=94 Identities=17% Similarity=0.253 Sum_probs=60.8
Q ss_pred CCCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeec-------cccccCee---------Eeec-ccc
Q 036697 60 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVH-------LPFDHSLL---------VQNL-TGQ 122 (253)
Q Consensus 60 sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~-------~P~d~~~~---------vqNf-Ta~ 122 (253)
.|.+++.+ |. ......-||...+-+.+.|+++....+....-.++ .+.+.... -++. ...
T Consensus 172 pp~v~I~~--~~-~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (554)
T PF07919_consen 172 PPKVSIKL--PN-HKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGI 248 (554)
T ss_pred CCCeEEEe--CC-CCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccceecccccccccchhccCc
Confidence 45555444 11 12356889999999999999998877665555551 01111010 0111 111
Q ss_pred ccCCeeecCCCceEEeEEeeeeCCceEeEEEEEEEE
Q 036697 123 AFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVYE 158 (253)
Q Consensus 123 ~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~l~yd 158 (253)
..+ .+.+|++.+..+.+....++++.|.+.+.|.
T Consensus 249 ~lg--~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~ 282 (554)
T PF07919_consen 249 PLG--ELAPGSSITVTLYIRTSRPGEYELSISVSYH 282 (554)
T ss_pred ccc--cCCCCCcEEEEEEEEeCCceeEEEEEEEEEE
Confidence 222 5789999988888888999999999999994
No 19
>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.30 E-value=31 Score=30.21 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=78.1
Q ss_pred eCCceEEEEEEEEeCCCCc-EEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEE-EEE
Q 036697 78 AAGEETELLVGMKNDGESS-VNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLV-GSI 155 (253)
Q Consensus 78 ~nG~~~~~lvg~~N~g~~~-~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~-i~l 155 (253)
+.++.+.+-+++-|-|.++ .-|+.=+-|| .+.+| .++.-.+...+. .||+|...+=+-...|..+|-|.-. ..+
T Consensus 39 v~~rd~~leY~IyNvGsspAldVtLsD~Sf-pt~~F-eIvkG~~~~swe--rIpags~vsHsivl~prv~g~f~~t~atV 114 (188)
T KOG3317|consen 39 VEARDVSLEYDIYNVGSSPALDVTLSDNSF-PTKTF-EIVKGNLSVSWE--RIPAGSNVSHSIVLRPRVKGVFNGTPATV 114 (188)
T ss_pred ccceeeEEEEeeEEcCCCcceeEEecCCCC-Cccce-eeecccccccee--ecCCCCceEEEEEEeecccceeccCceEE
Confidence 6788899999999999866 5566666665 44667 455555566776 6999988877666666455544322 456
Q ss_pred EE-E-eCCceEEEee-----ecceEEEEeCCCCcChhHHHHHHHHHHHHHHHHHHhhhee
Q 036697 156 VY-E-VDQHPYQSTF-----YNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQV 208 (253)
Q Consensus 156 ~y-d-~~g~~y~~~~-----fN~TVtVvE~~s~fD~e~iFLyl~lla~~~~~gy~vy~~~ 208 (253)
.| + .+| ..+++- -..+----|++--|||..+--|.|++-.+-.++..++.-|
T Consensus 115 ty~~~e~g-~~~~~~ts~~~~gyila~re~~rr~~~~~l~flgfgviv~p~t~ip~lL~~ 173 (188)
T KOG3317|consen 115 TYRIPEKG-ALQEAYTSPPGPGYILAQREPDRRFDPRLLAFLGFGVIVIPMTVIPILLVA 173 (188)
T ss_pred EEEcCCCC-ceeEEeecCCCCcceeeecCcccccChhHHHHHhhhhhhhhhhheeeeEEE
Confidence 66 3 344 333322 1122223355569999877666666555555554444444
No 20
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=80.66 E-value=12 Score=30.54 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=55.8
Q ss_pred CCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccC------CeeecCCCceEEeEEeee--eCCceEe
Q 036697 79 AGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFN------NATVPVSAQATFPIHFCC--QQPGTFD 150 (253)
Q Consensus 79 nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~------~~~V~pg~~atf~Y~F~~--l~p~~~~ 150 (253)
.+....+-..+.|..+.+..+-.|..+|++.++....=+.++...|- ...++||++.+|.-.|.- -....|+
T Consensus 66 ~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~p~~~a~~~~ 145 (149)
T PF11906_consen 66 GPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLEDPPPRAAGYR 145 (149)
T ss_pred CCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeCCCCccceEE
Confidence 45556777789999999999999999999998865566777664441 257999999988888774 4555665
Q ss_pred EE
Q 036697 151 LV 152 (253)
Q Consensus 151 L~ 152 (253)
+.
T Consensus 146 v~ 147 (149)
T PF11906_consen 146 VE 147 (149)
T ss_pred EE
Confidence 54
No 21
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=79.70 E-value=2.8 Score=30.47 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=12.1
Q ss_pred CccchhHHHHHHHHHhh
Q 036697 1 MEMKNFRVFFFALLLLA 17 (253)
Q Consensus 1 ~~~~~~~~~~~~~~ll~ 17 (253)
|--|-+.+-+||+.|+|
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 55566677778888877
No 22
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=79.09 E-value=1.3 Score=34.69 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=6.5
Q ss_pred CccchhHHHHHH
Q 036697 1 MEMKNFRVFFFA 12 (253)
Q Consensus 1 ~~~~~~~~~~~~ 12 (253)
|--|.|++|.|+
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 555665555444
No 23
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=76.83 E-value=28 Score=26.24 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=56.0
Q ss_pred eeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEEEEE
Q 036697 77 VAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIV 156 (253)
Q Consensus 77 l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~l~ 156 (253)
-..|++++|.|.-.+.|..++.|.. +.|... ... ..|......++.-+|.|..+|.|.+.+.+.
T Consensus 14 ~~vg~~~~f~v~~~d~G~~~~~v~i-----~~p~g~----------~~~-~~v~d~~dGty~v~y~P~~~G~~~i~V~~~ 77 (93)
T smart00557 14 GVVGEPAEFTIDTRGAGGGELEVEV-----TGPSGK----------KVP-VEVKDNGDGTYTVSYTPTEPGDYTVTVKFG 77 (93)
T ss_pred eecCCCEEEEEEcCCCCCCcEEEEE-----ECCCCC----------eeE-eEEEeCCCCEEEEEEEeCCCEeEEEEEEEC
Confidence 3788899999999999888888764 344431 111 345555567899999998889998876655
Q ss_pred E-EeCCceEEEeee
Q 036697 157 Y-EVDQHPYQSTFY 169 (253)
Q Consensus 157 y-d~~g~~y~~~~f 169 (253)
= ...|.+|.+.++
T Consensus 78 g~~I~gSPF~v~V~ 91 (93)
T smart00557 78 GEHIPGSPFTVKVG 91 (93)
T ss_pred CEECCCCCEEEEEe
Confidence 4 568899988765
No 24
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=76.72 E-value=12 Score=28.88 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=41.0
Q ss_pred eCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccc-----cCCeeecCCCceEEeEEeee-eCCceEeE
Q 036697 78 AAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQA-----FNNATVPVSAQATFPIHFCC-QQPGTFDL 151 (253)
Q Consensus 78 ~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~-----~~~~~V~pg~~atf~Y~F~~-l~p~~~~L 151 (253)
..++-..+-+.++|++++++.+....-.+....+. .+=..++... .. ..|+||++.+....|-. =...++.|
T Consensus 33 ~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~-~~~~~~~~~~~~~~~~~-~~i~pG~~~~g~l~F~vp~~~~~~~l 110 (123)
T PF11611_consen 33 EGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGN-KYDPDFSASSNDNDLFS-ETIKPGESVTGKLVFEVPKDDKPYTL 110 (123)
T ss_dssp --SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT---B--EEE-CCCTTTB--E-EEE-TT-EEEEEEEEEESTT-GG-EE
T ss_pred CCCEEEEEEEEEEECCCCcEEecccceEEEeCCCC-EEcccccchhccccccc-cEECCCCEEEEEEEEEECCCCccEEE
Confidence 34666788899999999999988666666655543 1222332222 33 68999999998888876 33333555
Q ss_pred EE
Q 036697 152 VG 153 (253)
Q Consensus 152 ~i 153 (253)
..
T Consensus 111 ~~ 112 (123)
T PF11611_consen 111 EY 112 (123)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 25
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=75.41 E-value=18 Score=30.85 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=39.3
Q ss_pred cCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee
Q 036697 70 PKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC 143 (253)
Q Consensus 70 p~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~ 143 (253)
|......+.-||...+.+..+|..+.+++-.++--- .|.....|..-.-=-=+.-..+.|||+..+|-.|..
T Consensus 56 P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~~nV--~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPv~F~I 127 (152)
T PF04442_consen 56 PEQRSVKVHPGETALVFYEATNPSDKPITGQAIPNV--TPGEAGKYFNKIECFCFEEQTLAPGETVDMPVVFYI 127 (152)
T ss_dssp -S-SEEEEETT--EEEEEEEEE-SSS-EE---EEEE---SSS-STTECCS-TTS-S--EE-TT-EEEEEEEEEE
T ss_pred eeeeeEEeCCCCEEEEEEEEECCCCCcEEEEEeeeE--CHHHhhhhccccceEeccCcCcCCCCeEEEEEEEEE
Confidence 444456899999999999999999999987654322 344433333322222233357889999999999997
No 26
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=74.68 E-value=21 Score=28.08 Aligned_cols=59 Identities=8% Similarity=0.213 Sum_probs=32.3
Q ss_pred CceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeE-eec--cccccCCeeecCCCceEEe
Q 036697 80 GEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLV-QNL--TGQAFNNATVPVSAQATFP 138 (253)
Q Consensus 80 G~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~v-qNf--Ta~~~~~~~V~pg~~atf~ 138 (253)
+...-+-..++|+++++..+.++....-.--.....+ ++- +..+.....||||.+..|.
T Consensus 13 ~~~~a~y~ti~N~g~~~~~L~~v~s~~a~~v~lh~~~~~~g~~~m~~v~~i~ipa~~~v~l~ 74 (110)
T PF04314_consen 13 ANVTAAYFTITNNGDQDDRLVGVSSPAAARVELHETVMEDGVMKMRPVDSIPIPAGSTVELK 74 (110)
T ss_dssp -SEEEEEEEEE-CSSSEEEEEEEE-TTCCEEEEEEECCCCCEEEECCSS-EEEETT-EEEE-
T ss_pred CccEEEEEEEEeCCCCCeEEEEEEcCCCceEEEEEEEccCCeEEEEECCCEEECCCCeEEec
Confidence 3566777889999999999998877522111111111 111 1223334789999999883
No 27
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=74.62 E-value=39 Score=33.25 Aligned_cols=89 Identities=10% Similarity=0.273 Sum_probs=67.7
Q ss_pred CCCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeecc---------------cccc
Q 036697 60 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLT---------------GQAF 124 (253)
Q Consensus 60 sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfT---------------a~~~ 124 (253)
+|=+++.+.|.+. +..+|+++++-|.++++-..++.+..+.=.|...... ..+++=. ....
T Consensus 9 ~~~l~~~~~F~~~---~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (554)
T PF07919_consen 9 SPFLEASVAFSQS---EGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYP-IVISHSDADASSADSSTSSGSPLSGS 84 (554)
T ss_pred cCcEEEEEEEccC---CccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCC-ceEeccccccccccCcccccccccCc
Confidence 4559999999875 6899999999999999999999999999999876442 3333322 1122
Q ss_pred CCeeecCCCceEEeEEeeeeC---CceEeEE
Q 036697 125 NNATVPVSAQATFPIHFCCQQ---PGTFDLV 152 (253)
Q Consensus 125 ~~~~V~pg~~atf~Y~F~~l~---p~~~~L~ 152 (253)
.+..+.||+...|.+.|.+-. +|++...
T Consensus 85 ~~L~l~p~~~kv~~~~~~~~~~~~~g~~~i~ 115 (554)
T PF07919_consen 85 ADLTLSPGQTKVFSFKFVPREQDVSGELEIT 115 (554)
T ss_pred cceEEeecceEEEEEEEeccccccCCcEEEE
Confidence 236789999999999999833 8876543
No 28
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=71.29 E-value=27 Score=28.70 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=49.0
Q ss_pred eeCCceEEEEEEEEeCCCCcEEEEEEeeeecc---cccc---CeeEee--c--cccccCCeeecCCCceEEeEEeee-eC
Q 036697 77 VAAGEETELLVGMKNDGESSVNVIAIQASVHL---PFDH---SLLVQN--L--TGQAFNNATVPVSAQATFPIHFCC-QQ 145 (253)
Q Consensus 77 l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~---P~d~---~~~vqN--f--Ta~~~~~~~V~pg~~atf~Y~F~~-l~ 145 (253)
+--++..-+-..++|.|+.++.=..+.++|.+ +.+. ...-|. | +...+. ..++||+...|...|.. -.
T Consensus 58 l~~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~-~~L~~~e~~~f~~~~~~~p~ 136 (149)
T PF09624_consen 58 LQYSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIA-DNLKPGESKEFRFIFPYPPY 136 (149)
T ss_pred eeeccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHH-hhcCcccceeEEEEecCCcc
Confidence 33456667778999999999999999999976 2211 111111 1 012233 23999999999888776 45
Q ss_pred CceEeEEEEE
Q 036697 146 PGTFDLVGSI 155 (253)
Q Consensus 146 p~~~~L~i~l 155 (253)
-+++.+.+.+
T Consensus 137 ~~~~~~~~~~ 146 (149)
T PF09624_consen 137 FGNYNIRVKS 146 (149)
T ss_pred CCCceEEEEE
Confidence 5555555444
No 29
>PRK02710 plastocyanin; Provisional
Probab=71.10 E-value=14 Score=29.56 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=16.8
Q ss_pred cceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 74 ARVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
..++..|..+ .|+|++..+-++.
T Consensus 48 ~i~v~~Gd~V----~~~N~~~~~H~v~ 70 (119)
T PRK02710 48 TLTIKAGDTV----KWVNNKLAPHNAV 70 (119)
T ss_pred EEEEcCCCEE----EEEECCCCCceEE
Confidence 4588999874 4678877777765
No 30
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=71.07 E-value=2.6 Score=35.96 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=18.1
Q ss_pred ecceEEEEeCCCCcChhHHHHHHHHHHHHHHHHHH
Q 036697 169 YNGTIEVVESGGFISIESVFLVTLGIALLVLFGLW 203 (253)
Q Consensus 169 fN~TVtVvE~~s~fD~e~iFLyl~lla~~~~~gy~ 203 (253)
|.+-.+-+-+|++|..- ||.+|+|+++++..+
T Consensus 14 y~ecls~~~~psffsth---m~tILiaIvVliiii 45 (189)
T PF05568_consen 14 YGECLSPVTPPSFFSTH---MYTILIAIVVLIIII 45 (189)
T ss_pred hhhhcCCCCCccHHHHH---HHHHHHHHHHHHHHH
Confidence 33444455677777654 556666665554433
No 31
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=70.88 E-value=48 Score=25.80 Aligned_cols=78 Identities=8% Similarity=0.121 Sum_probs=47.5
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee-eCCceEeEEE
Q 036697 75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC-QQPGTFDLVG 153 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~-l~p~~~~L~i 153 (253)
..+..|++.++-+.++.+.+-+ =..++=.++........-.|-...... ....++...++.+.|.. |.||.|.+.+
T Consensus 29 ~~~~~ge~~~i~i~~~~~~~i~--~~~~~~~i~~~~g~~v~~~~t~~~~~~-~~~~~~g~~~~~~~i~~~L~~G~Y~i~v 105 (142)
T PF14524_consen 29 SSFESGEPIRIRIDYEVNEDID--DPVFGFAIRDSDGQRVFGTNTYDSGFP-IPLSEGGTYEVTFTIPKPLNPGEYSISV 105 (142)
T ss_dssp SSEETTSEEEEEEEEEESS-EE--EEEEEEEEEETT--EEEEEEHHHHT---EEE-TT-EEEEEEEEE--B-SEEEEEEE
T ss_pred eEEeCCCEEEEEEEEEECCCCC--ccEEEEEEEcCCCCEEEEECccccCcc-ccccCCCEEEEEEEEcCccCCCeEEEEE
Confidence 5789999999999999965422 233444555554432222232222222 33334888899999998 9999999999
Q ss_pred EE
Q 036697 154 SI 155 (253)
Q Consensus 154 ~l 155 (253)
.+
T Consensus 106 ~l 107 (142)
T PF14524_consen 106 GL 107 (142)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 32
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=70.31 E-value=4.9 Score=28.85 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=25.1
Q ss_pred eeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeE
Q 036697 114 LLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDL 151 (253)
Q Consensus 114 ~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L 151 (253)
+.+--++..+ ..+-||++.+++|+|.||..|-+.|
T Consensus 18 F~v~G~~~~~---~~~~~~~~~~i~~~Fipl~aG~~~L 52 (57)
T PF12742_consen 18 FIVCGPKKMN---FHMWPGQKFEIPYNFIPLTAGFLKL 52 (57)
T ss_pred eEEEccceeE---EEEccCceEEEEEEEEEeehheecC
Confidence 4454455433 4689999999999999977665543
No 33
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=69.76 E-value=44 Score=25.01 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=37.5
Q ss_pred EEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEEE
Q 036697 84 ELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGS 154 (253)
Q Consensus 84 ~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~ 154 (253)
.+.+.|.|.|...+++..-..... +..... ..|+||++.++..... -..+-|+|.|.
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~y~------------~~~~~~-~~v~ag~~~~~~w~l~-~s~gwYDl~v~ 77 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNAYG------------GGGPWT-YTVAAGQTVSLTWPLA-ASGGWYDLTVT 77 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCCcC------------CCCCEE-EEECCCCEEEEEEeec-CCCCcEEEEEE
Confidence 789999999999988876552221 111222 5799999987776542 45566666543
No 34
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=65.97 E-value=41 Score=33.04 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=57.5
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEE---EEEEe-eeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCc
Q 036697 75 RVVAAGEETELLVGMKNDGESSVN---VIAIQ-ASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPG 147 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~---V~~i~-gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~ 147 (253)
..+..|+...+.+.++|.|..+.. +.... .....|. .+.-- .+|- ..+.||+...+.+.+.. ..+|
T Consensus 161 ~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~~~i-----~~~~~-~~~i-~~l~p~es~~v~f~v~~~~~a~~g 233 (500)
T COG1361 161 EAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYLGPI-----YSAND-TPYI-GALGPGESVNVTFSVYAGSNAEPG 233 (500)
T ss_pred cccCCCCccEEEEEEEeCCcccccceEEEEeCCcceeccc-----ccccc-ceee-eeeCCCceEEEEEEEEeecCCCCc
Confidence 467888999999999999975433 33222 1112221 11110 2344 58999999999999999 6799
Q ss_pred eEeEEEEEEE-EeCCceEEE
Q 036697 148 TFDLVGSIVY-EVDQHPYQS 166 (253)
Q Consensus 148 ~~~L~i~l~y-d~~g~~y~~ 166 (253)
.|-+.+.+.| +.++..+..
T Consensus 234 ~y~i~i~i~~~~~~~~~~~~ 253 (500)
T COG1361 234 TYTINLEITYKDEEGSVKSP 253 (500)
T ss_pred cEEEEEEEEEecCCcccccc
Confidence 9999999999 645544443
No 35
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=64.31 E-value=38 Score=32.97 Aligned_cols=89 Identities=9% Similarity=0.181 Sum_probs=57.3
Q ss_pred eCCceEEEEEEEEeCCCCcEEEE-EEeeeecccc---------cc-CeeEeecccccc-CCeeecCCCceEEeEEeee--
Q 036697 78 AAGEETELLVGMKNDGESSVNVI-AIQASVHLPF---------DH-SLLVQNLTGQAF-NNATVPVSAQATFPIHFCC-- 143 (253)
Q Consensus 78 ~nG~~~~~lvg~~N~g~~~~~V~-~i~gSf~~P~---------d~-~~~vqNfTa~~~-~~~~V~pg~~atf~Y~F~~-- 143 (253)
+.|+.-++-+.++|+|++++.+- +-++.+|..+ +| .+++-+ .... ++..|.|||+.++.-.-.-
T Consensus 279 VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~--GL~v~d~~pI~PGETr~v~v~aqdA~ 356 (399)
T TIGR03079 279 VPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAE--GLEVDDQSAIAPGETVEVKMEAKDAL 356 (399)
T ss_pred cCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhc--cceeCCCCCcCCCcceEEEEEEehhh
Confidence 67999999999999999999984 6666665332 11 233443 2222 2246999999999865542
Q ss_pred ---------eCCceEeEEEEEEE-EeCCceEEEee
Q 036697 144 ---------QQPGTFDLVGSIVY-EVDQHPYQSTF 168 (253)
Q Consensus 144 ---------l~p~~~~L~i~l~y-d~~g~~y~~~~ 168 (253)
+.--+-++-.-+++ |.+|+-|....
T Consensus 357 WEveRL~~L~~DpdSrfgGLLff~d~~G~R~~~~I 391 (399)
T TIGR03079 357 WEVQRLMALLGDPESRFGGLLMFWDPEGNRIINSI 391 (399)
T ss_pred hHHHHHHHHhcCcccccceEEEEEcCCCCEEehhc
Confidence 22223344444555 88888876644
No 36
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=64.00 E-value=65 Score=24.83 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=50.3
Q ss_pred eCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee-----eCCceEeEE
Q 036697 78 AAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC-----QQPGTFDLV 152 (253)
Q Consensus 78 ~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~-----l~p~~~~L~ 152 (253)
.++....+.+.|.|+...+++=..+. +..|..+..-++-.+. ..|+|+.+.+-...... -.+.++.+.
T Consensus 21 ~~~~~~~i~~~f~N~s~~~it~f~~q--~avpk~~~l~l~~~s~-----~~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~~ 93 (115)
T PF02883_consen 21 PNPNQGRIKLTFGNKSSQPITNFSFQ--AAVPKSFKLQLQPPSS-----STIPPGQQITQVIKVENSPFSEPTPKPLKPR 93 (115)
T ss_dssp CETTEEEEEEEEEE-SSS-BEEEEEE--EEEBTTSEEEEEESS------SSB-TTTEEEEEEEEEESS-BSTTSSTTEEE
T ss_pred CCCCEEEEEEEEEECCCCCcceEEEE--EEeccccEEEEeCCCC-----CeeCCCCeEEEEEEEEEeecccCCCCCcCeE
Confidence 36778899999999987776633333 3344444344444332 57888888887777776 234577888
Q ss_pred EEEEEEeCCc
Q 036697 153 GSIVYEVDQH 162 (253)
Q Consensus 153 i~l~yd~~g~ 162 (253)
+.+-|..+|.
T Consensus 94 ~~vsy~~~g~ 103 (115)
T PF02883_consen 94 LRVSYNVGGQ 103 (115)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEEECCE
Confidence 9999987776
No 37
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=62.66 E-value=29 Score=30.59 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=52.1
Q ss_pred cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCe---eEeeccccccCCeeecCCCceEEeEEeee--eCCce
Q 036697 74 ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL---LVQNLTGQAFNNATVPVSAQATFPIHFCC--QQPGT 148 (253)
Q Consensus 74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~---~vqNfTa~~~~~~~V~pg~~atf~Y~F~~--l~p~~ 148 (253)
...+.-||...+-+..+|..+++++-..+-- . .|..... .||=| =++...+.|||+..+|-.|.. -.|.+
T Consensus 87 ~v~V~pGE~~~~~y~a~N~sd~~i~g~A~~n-V-~P~~a~~YF~KieCF---CF~eQ~L~pgE~~~mPV~F~IDP~i~~d 161 (188)
T PRK05089 87 SVDVHPGELNLVFYEAENLSDRPIVGQAIPS-V-TPGQAGAYFNKIECF---CFTQQTLQPGETREMPVVFYVDPDLPKD 161 (188)
T ss_pred EEEEcCCCeEEEEEEEECCCCCcEEEEEecc-c-CHHHHhhhccceeee---cccCcccCCCCeEecCEEEEECCCcccc
Confidence 3688999999999999999999998774421 1 2332222 23333 233356889999999999997 44444
Q ss_pred EeEEEEEEE
Q 036697 149 FDLVGSIVY 157 (253)
Q Consensus 149 ~~L~i~l~y 157 (253)
.. .|+|-|
T Consensus 162 v~-~iTLSY 169 (188)
T PRK05089 162 VK-TITLSY 169 (188)
T ss_pred cC-EEEEEE
Confidence 32 455555
No 38
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=60.80 E-value=28 Score=25.90 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=49.6
Q ss_pred eeeCCceEEEEEEEEeCCCCcEEE--EEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEE
Q 036697 76 VVAAGEETELLVGMKNDGESSVNV--IAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVG 153 (253)
Q Consensus 76 ~l~nG~~~~~lvg~~N~g~~~~~V--~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i 153 (253)
....|++++|.|..++.+..++.. ..+.-.+..|....... ... ..+......++..+|.|-.+|.|.|.+
T Consensus 16 ~~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~~~~------~~~-~~v~~~~~G~y~v~y~p~~~G~y~i~V 88 (101)
T PF00630_consen 16 PAVVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKEEPV------PVP-VEVIDNGDGTYTVSYTPTEPGKYKISV 88 (101)
T ss_dssp EEETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSESS--------EEE-EEEEEESSSEEEEEEEESSSEEEEEEE
T ss_pred CeECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCcccc------ccc-eEEEECCCCEEEEEEEeCccEeEEEEE
Confidence 458999999999999997766543 12223335555431110 122 234444556888999998889998886
Q ss_pred EEEE-EeCCceE
Q 036697 154 SIVY-EVDQHPY 164 (253)
Q Consensus 154 ~l~y-d~~g~~y 164 (253)
.+.= ...|.+|
T Consensus 89 ~~~g~~I~gSPf 100 (101)
T PF00630_consen 89 KINGQPIPGSPF 100 (101)
T ss_dssp EESSEB-TTSSE
T ss_pred EECCEECcCCCc
Confidence 6532 2344444
No 39
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=60.26 E-value=95 Score=25.50 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=50.7
Q ss_pred EEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeE-EEEEEE-EeCC
Q 036697 84 ELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDL-VGSIVY-EVDQ 161 (253)
Q Consensus 84 ~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L-~i~l~y-d~~g 161 (253)
.-.|.+.|+++.++++..-.=-+.+-......|++-=.+--.| .+.||+ +|.|.=......+.+. ...... +.+|
T Consensus 32 ~Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP-~L~PGe--~F~Y~S~~~l~tp~G~M~G~y~~~~~~G 108 (127)
T PRK05461 32 AYTITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQP-VLAPGE--SFEYTSGAVLETPSGTMQGHYQMVDEDG 108 (127)
T ss_pred EEEEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCc-eECCCC--CeEEeCCCCccCCCEEEEEEEEEEeCCC
Confidence 4567788999999998876666666555445666665555554 799998 6777544422233332 222223 6788
Q ss_pred ceEEEe
Q 036697 162 HPYQST 167 (253)
Q Consensus 162 ~~y~~~ 167 (253)
..|.+.
T Consensus 109 ~~F~v~ 114 (127)
T PRK05461 109 ERFEVP 114 (127)
T ss_pred CEEEEE
Confidence 877653
No 40
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=56.83 E-value=46 Score=29.89 Aligned_cols=16 Identities=25% Similarity=0.081 Sum_probs=11.2
Q ss_pred ccchhHHHHHHHHHhh
Q 036697 2 EMKNFRVFFFALLLLA 17 (253)
Q Consensus 2 ~~~~~~~~~~~~~ll~ 17 (253)
+||+|+++++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (229)
T PRK15211 3 MMKWGLVSLLSLAVCG 18 (229)
T ss_pred eeehHHHHHHHHHHhH
Confidence 4788888777766544
No 41
>COG4743 Predicted membrane protein [Function unknown]
Probab=55.63 E-value=35 Score=31.66 Aligned_cols=84 Identities=18% Similarity=0.341 Sum_probs=48.4
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEE----EEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee-eCCceE
Q 036697 75 RVVAAGEETELLVGMKNDGESSVN----VIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC-QQPGTF 149 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~----V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~-l~p~~~ 149 (253)
-++..|+..++.||+.|++-.+++ +..+.-+++.+... .++.-.--.++| .++| ..|-.|.+ +.+.+-
T Consensus 218 tn~t~ge~g~VivGivNhEhRnvtY~meirl~n~tl~~~tn~-~~i~e~~l~~~N-vt~~-----~~pv~~~~~~~Gkn~ 290 (316)
T COG4743 218 TNLTVGERGEVIVGIVNHEHRNVTYRMEIRLVNLTLNFTTNE-TGIHEMYLMDFN-VTLP-----EIPVNIEITLPGKNW 290 (316)
T ss_pred cceecCCceEEEEEeecccccceeEEEEEEEecceecccchh-hhhhhhheeecc-eecc-----cccceeeccCCCcce
Confidence 378999999999999999987765 34566677777542 122211112233 3333 12333345 555566
Q ss_pred eEEEEEEEEe-CCceEE
Q 036697 150 DLVGSIVYEV-DQHPYQ 165 (253)
Q Consensus 150 ~L~i~l~yd~-~g~~y~ 165 (253)
.|..-++=|. ...+|+
T Consensus 291 kleFLLf~d~e~eiPyr 307 (316)
T COG4743 291 KLEFLLFKDPEPEIPYR 307 (316)
T ss_pred EEEEEEecCCCCCCCch
Confidence 6665555543 344554
No 42
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=55.08 E-value=12 Score=25.74 Aligned_cols=32 Identities=28% Similarity=0.201 Sum_probs=22.5
Q ss_pred cChhHHHHHHHHHHHHHHHHHHhhheeecccc
Q 036697 182 ISIESVFLVTLGIALLVLFGLWIHGQVKQLSK 213 (253)
Q Consensus 182 fD~e~iFLyl~lla~~~~~gy~vy~~~~~~~k 213 (253)
.+|-+++...+...+++..||-+|..+.+.+|
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 35666777667777788899888887754443
No 43
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=53.28 E-value=1.2e+02 Score=27.64 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=49.6
Q ss_pred CCCCCCeeEEEEccCCCc-ceeeCC---ceEEEEEEEEeCCCCcEEEEEEeeeecccc--ccCeeEeecc----------
Q 036697 57 LSPAPGVDTVCIFPKNSA-RVVAAG---EETELLVGMKNDGESSVNVIAIQASVHLPF--DHSLLVQNLT---------- 120 (253)
Q Consensus 57 ~~~sP~v~t~~~Fp~~~~-~~l~nG---~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~--d~~~~vqNfT---------- 120 (253)
++..|+|.+...-.+... ..+.++ ...+.-+.++|+.+.++.|...+- .|. |-+-.|....
T Consensus 214 ~G~d~~v~v~r~~~~~~~~~g~~~~~~~~~~~~~itv~N~~~~~v~v~v~d~---iPvs~~~~I~V~~~~~~~~~~~~~~ 290 (317)
T PF13598_consen 214 FGVDPDVRVERKLLKKEEERGFFGKSQRRTYEYTITVRNNKDEPVTVTVEDQ---IPVSEDEDIKVELLEPPEPNEDEKD 290 (317)
T ss_pred cccCCCEEEEEEecceecccccccccEEEEEEEEEEEECCCCCCEEEEEEeC---CCCCCCceEEEEEcCCCCCcccCCC
Confidence 566777777665544311 233333 345678899999999999876542 231 1111111111
Q ss_pred -ccccCCeeecCCCceEEeEEeee
Q 036697 121 -GQAFNNATVPVSAQATFPIHFCC 143 (253)
Q Consensus 121 -a~~~~~~~V~pg~~atf~Y~F~~ 143 (253)
..... ..|+||++.++.|.|..
T Consensus 291 g~~~W~-~~l~~g~~~~l~~~y~v 313 (317)
T PF13598_consen 291 GILEWK-VTLPPGESRTLEFSYEV 313 (317)
T ss_pred CEEEEE-EEECCCCEEEEEEEEEE
Confidence 22234 57999999999999875
No 44
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=52.74 E-value=15 Score=33.55 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeecccc
Q 036697 186 SVFLVTLGIALLVLFGLWIHGQVKQLSK 213 (253)
Q Consensus 186 ~iFLyl~lla~~~~~gy~vy~~~~~~~k 213 (253)
.+|.++|++.++++++|++.+.|.+..+
T Consensus 201 g~f~wl~i~~~l~~~~Y~i~g~~~n~~~ 228 (268)
T PF09451_consen 201 GFFTWLFIILFLFLAAYLIFGSWYNYNR 228 (268)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhheeecc
Confidence 3677888888888899999998865333
No 45
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=52.67 E-value=8.7 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhheeecc
Q 036697 191 TLGIALLVLFGLWIHGQVKQL 211 (253)
Q Consensus 191 l~lla~~~~~gy~vy~~~~~~ 211 (253)
+++++..++++.++|.+|+.+
T Consensus 16 lVglv~i~iva~~iYRKw~aR 36 (43)
T PF08114_consen 16 LVGLVGIGIVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555778888899999753
No 46
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=52.48 E-value=98 Score=23.25 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=55.5
Q ss_pred CCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEE
Q 036697 61 PGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIH 140 (253)
Q Consensus 61 P~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~ 140 (253)
.++.+.+.+-.+ +....+.+.+.|+...+++=..+. +..|.....-++..+. ..++||++.+-...
T Consensus 5 ~~l~I~~~~~~~-------~~~~~i~~~~~N~s~~~it~f~~~--~avpk~~~l~l~~~s~-----~~l~p~~~i~q~~~ 70 (104)
T smart00809 5 NGLQIGFKFERR-------PGLIRITLTFTNKSPSPITNFSFQ--AAVPKSLKLQLQPPSS-----PTLPPGGQITQVLK 70 (104)
T ss_pred CCEEEEEEEEcC-------CCeEEEEEEEEeCCCCeeeeEEEE--EEcccceEEEEcCCCC-----CccCCCCCEEEEEE
Confidence 456666665332 345789999999998776644443 3356654333443332 36899976544444
Q ss_pred eeeeCCceEeEEEEEEEEeCCceEE
Q 036697 141 FCCQQPGTFDLVGSIVYEVDQHPYQ 165 (253)
Q Consensus 141 F~~l~p~~~~L~i~l~yd~~g~~y~ 165 (253)
...-.+.+..+.+.+-|..+|....
T Consensus 71 i~~~~~~~~~~~~~vsy~~~g~~~~ 95 (104)
T smart00809 71 VENPGKFPLRLRLRLSYLLGGSAVT 95 (104)
T ss_pred EECCCCCCEEEEEEEEEEECCEEEE
Confidence 4334555678888888876665433
No 47
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=52.35 E-value=6.8 Score=26.87 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=12.4
Q ss_pred ccchhHHHHHHHHHhhhc
Q 036697 2 EMKNFRVFFFALLLLASP 19 (253)
Q Consensus 2 ~~~~~~~~~~~~~ll~s~ 19 (253)
+|+|-++++|.++.+...
T Consensus 2 tlKKsllLlfflG~ISlS 19 (46)
T PF03032_consen 2 TLKKSLLLLFFLGTISLS 19 (46)
T ss_pred cchHHHHHHHHHHHcccc
Confidence 678877777777765433
No 48
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=52.22 E-value=9.6 Score=29.84 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=16.0
Q ss_pred Cccc-hhHHHHHHHHHhhhccccee
Q 036697 1 MEMK-NFRVFFFALLLLASPLLQVA 24 (253)
Q Consensus 1 ~~~~-~~~~~~~~~~ll~s~~~~~~ 24 (253)
|.|| ++.+++++++|++.|+....
T Consensus 1 m~~~~~~~ll~~v~~l~~~pl~~~~ 25 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVVLPLLIYA 25 (91)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcc
Confidence 8888 45566666666788876533
No 49
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=50.52 E-value=91 Score=23.00 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=33.3
Q ss_pred EEEEEEEEeCCCCcEEEEEEeee-eccccccCeeEe----eccccccCCeeecCCCceEEeEE
Q 036697 83 TELLVGMKNDGESSVNVIAIQAS-VHLPFDHSLLVQ----NLTGQAFNNATVPVSAQATFPIH 140 (253)
Q Consensus 83 ~~~lvg~~N~g~~~~~V~~i~gS-f~~P~d~~~~vq----NfTa~~~~~~~V~pg~~atf~Y~ 140 (253)
.+.-+.++|+|..++.=..+... |. .+.=-+.+ .++--.|. ..++||++.+|-|-
T Consensus 19 ~qy~v~I~N~~~~~I~~~~i~~~~l~--~~iW~l~~~~~~~y~lPs~~-~~i~pg~s~~FGYI 78 (80)
T PF09478_consen 19 TQYDVTITNNGSKPIKSLKISIDNLY--GSIWGLDKVSGNTYTLPSYQ-PTIKPGQSFTFGYI 78 (80)
T ss_pred EEEEEEEEECCCCeEEEEEEEECccc--hhheeEEeccCCEEECCccc-cccCCCCEEEEEEE
Confidence 57889999999988875544444 32 22100001 12223454 47999999999884
No 50
>PF15240 Pro-rich: Proline-rich
Probab=49.64 E-value=26 Score=30.67 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=4.2
Q ss_pred ceeeccCcc
Q 036697 22 QVAKCQSDS 30 (253)
Q Consensus 22 ~~~~~~~~~ 30 (253)
++..||+-+
T Consensus 12 ALSSAQ~~d 20 (179)
T PF15240_consen 12 ALSSAQSTD 20 (179)
T ss_pred Hhhhccccc
Confidence 344467433
No 51
>COG1470 Predicted membrane protein [Function unknown]
Probab=48.40 E-value=1.2e+02 Score=30.55 Aligned_cols=77 Identities=12% Similarity=0.230 Sum_probs=56.9
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeec-cccccCeeEeecccccc--CCeeecCCCceEEeEEeee---eCCce
Q 036697 75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVH-LPFDHSLLVQNLTGQAF--NNATVPVSAQATFPIHFCC---QQPGT 148 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~-~P~d~~~~vqNfTa~~~--~~~~V~pg~~atf~Y~F~~---l~p~~ 148 (253)
..+..|....+-|.+.|+|..+-++.. +++ .|.++.+ +||...+ ....+.||++..+.-..+| -.||+
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~L---e~~g~pe~w~~---~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~ 351 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYAL---ELSGLPEGWTA---EFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGT 351 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEE---EeccCCCCcce---EEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCc
Confidence 577888888999999999998776652 233 4666654 3443333 3346889999999999999 78999
Q ss_pred EeEEEEEEE
Q 036697 149 FDLVGSIVY 157 (253)
Q Consensus 149 ~~L~i~l~y 157 (253)
|.+.|++.=
T Consensus 352 Ynv~I~A~s 360 (513)
T COG1470 352 YNVTITASS 360 (513)
T ss_pred eeEEEEEec
Confidence 988876643
No 52
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.25 E-value=1.4e+02 Score=29.63 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=53.1
Q ss_pred CCCCCCeeEEEEccCCCc--ceeeCCc---eEEEEEEEEeCCCCcEEEEEEeeeeccc--cccCeeEee-----------
Q 036697 57 LSPAPGVDTVCIFPKNSA--RVVAAGE---ETELLVGMKNDGESSVNVIAIQASVHLP--FDHSLLVQN----------- 118 (253)
Q Consensus 57 ~~~sP~v~t~~~Fp~~~~--~~l~nG~---~~~~lvg~~N~g~~~~~V~~i~gSf~~P--~d~~~~vqN----------- 118 (253)
++.-|+|.+....++... .-+.+++ .....|.++|..+.+++|...+- .| .|-+.-|.-
T Consensus 413 ~G~D~~v~v~r~~~~~~~~~~G~~~~~~~~~~~~~i~v~N~~~~~v~v~v~d~---~PvS~d~~i~V~~~~~~~~~~~~~ 489 (525)
T TIGR02231 413 LGVDEGIRIERKVVKRQTDEGGLIGNTSRTEYAYRITLKNLRKEPERVQIEEQ---LPVSENEDIKVKLLSPTTPGYDEE 489 (525)
T ss_pred ccCCCceEEEEeeeeeccccCceecccEEEEEEEEEEEEcCCCCceEEEEEee---ccCCCCCeeEEEEecCCCcccccc
Confidence 667788887766654322 1255555 34678999999999998865542 22 121111111
Q ss_pred ---ccccccCCeeecCCCceEEeEEeeeeCC
Q 036697 119 ---LTGQAFNNATVPVSAQATFPIHFCCQQP 146 (253)
Q Consensus 119 ---fTa~~~~~~~V~pg~~atf~Y~F~~l~p 146 (253)
--..... ..|+||++.++.|.|..=.|
T Consensus 490 ~~~~G~~~W~-l~L~pg~~~~l~~~y~v~~P 519 (525)
T TIGR02231 490 DKKDGILEWK-LTLKPGEKRDLKFKFKVEHP 519 (525)
T ss_pred ccCCCeEEEE-EEECCCCeEEEEEEEEEecC
Confidence 1122344 67999999999999987333
No 53
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=46.91 E-value=11 Score=30.02 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.6
Q ss_pred CccchhHHHHHHHHHhhhcccceeec
Q 036697 1 MEMKNFRVFFFALLLLASPLLQVAKC 26 (253)
Q Consensus 1 ~~~~~~~~~~~~~~ll~s~~~~~~~~ 26 (253)
|.++++.+++++++|.+.|+.....+
T Consensus 1 ~~~~~~~L~~~vi~l~~~pl~~~~~~ 26 (100)
T PRK02898 1 KMKKNLLLLLLVILLAVLPLFIYSGS 26 (100)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 56777888888888889998765443
No 54
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=46.87 E-value=43 Score=32.01 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=40.1
Q ss_pred eCCceEeEEEEEEEEeCCceEEEeeecceEEEEeCC-CCcChhHHHH---HHHHHHHHHHHHHHhhhee
Q 036697 144 QQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESG-GFISIESVFL---VTLGIALLVLFGLWIHGQV 208 (253)
Q Consensus 144 l~p~~~~L~i~l~yd~~g~~y~~~~fN~TVtVvE~~-s~fD~e~iFL---yl~lla~~~~~gy~vy~~~ 208 (253)
+.||.|.|+|.++| -+.-||||=+|+=-- +..-++--|| |+++.++++++|..+.-.|
T Consensus 293 l~~G~Y~lnI~l~f-------Pv~~f~GtKsi~Ltt~SviGgkN~fLGI~ylivg~ical~~~if~~~~ 354 (372)
T COG5035 293 LPPGTYQLNITLNF-------PVLEFNGTKSIVLTTNSVIGGKNYFLGIVYLIVGGICALLGLIFLIKW 354 (372)
T ss_pred CCCceEEEEEEeec-------ceeecCCceEEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999986 344488887776554 4555555454 8888777777776544444
No 55
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=46.58 E-value=37 Score=31.69 Aligned_cols=73 Identities=19% Similarity=0.156 Sum_probs=35.6
Q ss_pred EeCCCCcChhHHHHHHHHHHHHHHHHHHhhheeecccccccCCCc-ccccCCCCCCC-CCCccccccccccCCCccccC
Q 036697 176 VESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPK-VEVGTGTTDAS-MDEWLQGTAYTQSLSSKSKKK 252 (253)
Q Consensus 176 vE~~s~fD~e~iFLyl~lla~~~~~gy~vy~~~~~~~kk~kka~k-ve~gT~~~~~~-d~eWIP~~hl~~~~~~~~~~~ 252 (253)
.+++++|=- +||-.+ .++...++|-++.+..+++++ +|... ...+.+..... -.++|-.-+=+++|+|+||||
T Consensus 203 ~D~e~iFLY--~~l~a~-~~l~l~~~~~~l~~~~kkr~~-~~VE~GT~~~~~~D~eWIp~~~l~~~~k~spk~SPr~r~ 277 (285)
T PF03896_consen 203 FDPETIFLY--LFLAAL-GVLGLYFVYQFLPSSKKKRKA-KKVETGTSSTNDVDEEWIPKEHLNRPNKKSPKQSPRKRK 277 (285)
T ss_pred cChhhhhHH--HHHHHH-HHHHHHHHHHHHHhccccccC-CcccCCCCCCCCCCcccCCHHHhhhccCCCCCCChhhhh
Confidence 467776622 333333 333344555566666654443 33211 11122222233 447776555577777776665
No 56
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=45.54 E-value=14 Score=24.11 Aligned_cols=14 Identities=64% Similarity=0.828 Sum_probs=7.2
Q ss_pred cchhHHHHHHHHHhh
Q 036697 3 MKNFRVFFFALLLLA 17 (253)
Q Consensus 3 ~~~~~~~~~~~~ll~ 17 (253)
||+|.+ +|+++||+
T Consensus 1 Mk~l~~-a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSL-AFALLLLA 14 (36)
T ss_pred CceeHH-HHHHHHHH
Confidence 677766 33333333
No 57
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=44.98 E-value=73 Score=28.99 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=45.7
Q ss_pred cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCe---eEeeccccccCCeeecCCCceEEeEEeee
Q 036697 74 ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSL---LVQNLTGQAFNNATVPVSAQATFPIHFCC 143 (253)
Q Consensus 74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~---~vqNfTa~~~~~~~V~pg~~atf~Y~F~~ 143 (253)
...+.-||.+.+-+..+|..+++++-.++-- . .|..... .||=|= +.-..+.|||+..+|-.|..
T Consensus 131 ~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~yn-V-~P~~Ag~YFnKieCFC---F~eQ~L~pgE~~~MPV~F~I 198 (232)
T PTZ00128 131 EVEVLPGETALAFYRAKNRSDKPVIGVATYH-I-APPEAGLYFNKIQCFC---FEEQRLNPHEEVDMPVFFYI 198 (232)
T ss_pred EEEEcCCCeEEEEEEEECCCCCcEEEEEecc-c-CHHHHhhhccceeeec---ccccccCCCCeEecCEEEEE
Confidence 3688999999999999999999988764421 1 2332222 234332 22246889999999999997
No 58
>PF06586 TraK: TraK protein; InterPro: IPR010563 This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown [].
Probab=44.12 E-value=2.1e+02 Score=25.10 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHhhhc
Q 036697 5 NFRVFFFALLLLASP 19 (253)
Q Consensus 5 ~~~~~~~~~~ll~s~ 19 (253)
+...++++++|++.+
T Consensus 2 ~~~~l~~~~~l~~~~ 16 (234)
T PF06586_consen 2 KAKALLLAAALLAAP 16 (234)
T ss_pred cHHHHHHHHHHHhhh
Confidence 334444545554444
No 59
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=43.96 E-value=21 Score=32.16 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=9.9
Q ss_pred CCCcc-ccccccccCCCccc
Q 036697 232 MDEWL-QGTAYTQSLSSKSK 250 (253)
Q Consensus 232 d~eWI-P~~hl~~~~~~~~~ 250 (253)
.+||. |..+=++.+++|+|
T Consensus 79 ~~e~~tPn~~nkq~k~kk~k 98 (221)
T PF08374_consen 79 NSEWVTPNQENKQKKKKKKK 98 (221)
T ss_pred cccccCCCccchhhcccccc
Confidence 55898 55544444443333
No 60
>PF13584 BatD: Oxygen tolerance
Probab=43.77 E-value=2.2e+02 Score=27.74 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=54.9
Q ss_pred CeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCc-EEEEEEeeeeccccccCeeEeeccccccCCeeec---CCCceEE
Q 036697 62 GVDTVCIFPKNSARVVAAGEETELLVGMKNDGESS-VNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVP---VSAQATF 137 (253)
Q Consensus 62 ~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~-~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~---pg~~atf 137 (253)
..+....+. ..++..|++++..|.++=.|.-+ +..= .+..|.++..| . ...... .... ...+.++
T Consensus 272 ~f~l~~~~~---~~~~~~Ge~vt~ti~i~g~Gn~~~~~lP----~l~~~~~~~vy-~--~~~~~~-~~~~~~g~~g~~~~ 340 (484)
T PF13584_consen 272 NFSLSQSWD---PTEVKVGEPVTRTITISGEGNLPSIQLP----PLNLPKGFRVY-P--PKPQEQ-DKPSGGGLTGSRTF 340 (484)
T ss_pred EEEEEEEcC---cccccCCCeEEEEEEEEEEcchhcccCC----CCCCCcccEEc-C--CCcccc-ccccCCcceEEEEE
Confidence 344444442 25788899999888887665533 2211 11122222111 0 000111 0011 1234688
Q ss_pred eEEeeeeCCceEeEE-EEEEE-EeCCceEEEee-ecceEEE
Q 036697 138 PIHFCCQQPGTFDLV-GSIVY-EVDQHPYQSTF-YNGTIEV 175 (253)
Q Consensus 138 ~Y~F~~l~p~~~~L~-i~l~y-d~~g~~y~~~~-fN~TVtV 175 (253)
.|.+.|-++|+|.|- +.+.| |.+.+.|+..- =--+++|
T Consensus 341 ~~~~ip~~~G~~~lP~i~~~~fdp~~~~y~~~~~~~~~i~V 381 (484)
T PF13584_consen 341 KYTLIPKKPGDFTLPAIRFSWFDPQTGKYETATLPPITITV 381 (484)
T ss_pred EEEEEeCCCCeEEcCCeEEEEEcCCCCeEEEEEcCCEEEEE
Confidence 888888999999886 67788 87666555443 2344444
No 61
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=43.31 E-value=29 Score=23.55 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeecccc
Q 036697 186 SVFLVTLGIALLVLFGLWIHGQVKQLSK 213 (253)
Q Consensus 186 ~iFLyl~lla~~~~~gy~vy~~~~~~~k 213 (253)
+++...+...+++..||-+|..+...+|
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 3444445555677778888887754343
No 62
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=42.86 E-value=86 Score=26.73 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=23.6
Q ss_pred CCceEEEEEEEEeCCCCcEE-----E-EEEeeeecccccc
Q 036697 79 AGEETELLVGMKNDGESSVN-----V-IAIQASVHLPFDH 112 (253)
Q Consensus 79 nG~~~~~lvg~~N~g~~~~~-----V-~~i~gSf~~P~d~ 112 (253)
++-+.+..+=++|.|++.+. + +.|.|+.-+|..-
T Consensus 66 ~~g~~t~t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~ 105 (154)
T COG3354 66 TDGPYTYTFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYV 105 (154)
T ss_pred CCCceEEEEEEecCCCcccccCCCeEEEEEcCcEeccceE
Confidence 33567888888999976554 2 4788888777553
No 63
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=41.65 E-value=1.9e+02 Score=23.58 Aligned_cols=102 Identities=13% Similarity=0.186 Sum_probs=63.3
Q ss_pred CCCeeEEEEccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeE
Q 036697 60 APGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPI 139 (253)
Q Consensus 60 sP~v~t~~~Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y 139 (253)
.|+....-.-| ...|| ...+.+.++|..+.=+.=..+.+.+...... ..+--.+. -+ ..+.|.....|+-
T Consensus 27 ~p~L~l~~v~~-----~~~n~-~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~-k~~~~~~~--~~-~~mAPNS~f~~~i 96 (140)
T PF11797_consen 27 PPKLKLGKVKP-----GQING-RNVIQANLQNPQPAILKKLTVDAKVTKKGSK-KVLYTFKK--EN-MQMAPNSNFNFPI 96 (140)
T ss_pred CcccEEeeeee-----eEECC-eeEEEEEEECCCchhhcCcEEEEEEEECCCC-eEEEEeec--cC-CEECCCCeEEeEe
Confidence 45555433332 45677 5588899999987655556777888876643 23332222 22 4577776666655
Q ss_pred Eeee--eCCceEeEEEEEEEEeCCceEEEeeecceEEEE
Q 036697 140 HFCC--QQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVV 176 (253)
Q Consensus 140 ~F~~--l~p~~~~L~i~l~yd~~g~~y~~~~fN~TVtVv 176 (253)
..-- |.||.|.|.+.+..+.. .--|....+|.
T Consensus 97 ~~~~~~lk~G~Y~l~~~~~~~~~-----~W~f~k~F~It 130 (140)
T PF11797_consen 97 PLGGKKLKPGKYTLKITAKSGKK-----TWTFTKDFTIT 130 (140)
T ss_pred cCCCcCccCCEEEEEEEEEcCCc-----EEEEEEEEEEC
Confidence 5533 99999999998887433 33355555554
No 64
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=41.18 E-value=2.8e+02 Score=30.77 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=48.1
Q ss_pred CCCCCeeEEEE-ccCCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccc----------------cc---cCeeEe
Q 036697 58 SPAPGVDTVCI-FPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLP----------------FD---HSLLVQ 117 (253)
Q Consensus 58 ~~sP~v~t~~~-Fp~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P----------------~d---~~~~vq 117 (253)
++-|-+.+... -+.+ ...+..||..++-|.++|.+. ..|..+.=+|++- .+ ....+.
T Consensus 776 p~qP~L~v~~~sl~~~-~~mlleGE~~~~~ItL~N~S~--~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~ 852 (1185)
T PF08626_consen 776 PPQPLLEVKSSSLTQG-ALMLLEGEKQTFTITLRNTSS--VPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLF 852 (1185)
T ss_pred CCCCeEEEEeccCCCc-ceEEECCcEEEEEEEEEECCc--cccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhh
Confidence 45566655443 2332 358999999999999999994 4445555555521 11 011111
Q ss_pred ecccccc-CCeeecCCCceEEeEEee
Q 036697 118 NLTGQAF-NNATVPVSAQATFPIHFC 142 (253)
Q Consensus 118 NfTa~~~-~~~~V~pg~~atf~Y~F~ 142 (253)
++...+. +...|+||++++|++...
T Consensus 853 ~~~~~~i~~~~~I~Pg~~~~~~~~~~ 878 (1185)
T PF08626_consen 853 KLPAFRILNKPPIPPGESATFTVEVD 878 (1185)
T ss_pred cCcceeecccCccCCCCEEEEEEEec
Confidence 2222121 001799999999999864
No 65
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=40.89 E-value=1.2e+02 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=18.3
Q ss_pred ccccccCCeeecCCCceEEeEEeee
Q 036697 119 LTGQAFNNATVPVSAQATFPIHFCC 143 (253)
Q Consensus 119 fTa~~~~~~~V~pg~~atf~Y~F~~ 143 (253)
++...++ ..|+||++.+|-|...-
T Consensus 61 v~~~~wn-~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 61 VTNPSWN-GTIAPGGSVTFGFQASG 84 (101)
T ss_dssp EEESSTC-SEEEESEEEEEEEEEEE
T ss_pred EEcCCcC-cccCCCCeEEEEEEEeC
Confidence 4445687 79999999998777664
No 66
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=40.89 E-value=1.2e+02 Score=23.25 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=33.3
Q ss_pred EEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee
Q 036697 84 ELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC 143 (253)
Q Consensus 84 ~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~ 143 (253)
.--|.++|.++.++++..-.=-+......-..|..-=.+.-.| .+.||+ +|.|.=..
T Consensus 15 ~Y~I~I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P-~L~pGe--~f~Y~S~~ 71 (90)
T PF04379_consen 15 AYRIRIENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQP-VLAPGE--SFEYTSGC 71 (90)
T ss_dssp EEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB---EE-TTE--EEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCc-eECCCC--cEEEcCCC
Confidence 4457788999998888765555555544444555544555553 788999 78776554
No 67
>CHL00020 psbN photosystem II protein N
Probab=39.39 E-value=22 Score=24.08 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhheeecccc
Q 036697 185 ESVFLVTLGIALLVLFGLWIHGQVKQLSK 213 (253)
Q Consensus 185 e~iFLyl~lla~~~~~gy~vy~~~~~~~k 213 (253)
-+++...+...+++..||-+|..+.+.+|
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 34445455556677888888877754443
No 68
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=39.36 E-value=2.2e+02 Score=23.49 Aligned_cols=64 Identities=17% Similarity=0.015 Sum_probs=42.2
Q ss_pred EEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee-eCCceEeEEEE
Q 036697 85 LLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC-QQPGTFDLVGS 154 (253)
Q Consensus 85 ~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~-l~p~~~~L~i~ 154 (253)
...-+.|+-.+|++|..= -++| |..-.=||-....-. ..++|+++.++. .-.+ +.++.|+|-+.
T Consensus 58 ~~s~l~N~~q~pv~v~Yr--fYWY--D~~Gle~~~~es~~s-i~l~~~e~vsi~-~~~~~~~ak~~RLYL~ 122 (123)
T COG5633 58 ASSVLKNKRQEPVTVHYR--FYWY--DAQGLEQNPLESPRS-ITLPGHEAVSIY-LSKNTLEAKNYRLYLR 122 (123)
T ss_pred eeEEEeccccCceEEEEE--EEEE--cCCCceeccccCCcc-eEecCCceEEEE-cccCCCCceeEEEEEe
Confidence 566789999999999752 3455 332344565554443 677777777764 3444 88899998764
No 69
>PRK13202 ureB urease subunit beta; Reviewed
Probab=39.33 E-value=52 Score=26.41 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=23.0
Q ss_pred CCCcceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 71 KNSARVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 71 ~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
......+-+|.+-.+-+.++|.|+.|++|-
T Consensus 9 ~~~~I~ln~grr~~~~l~V~NtGDRPIQVG 38 (104)
T PRK13202 9 GSGDIEMNAAALSRLQMRIINAGDRPVQVG 38 (104)
T ss_pred CCCCEEeCCCCCceEEEEEEeCCCCceEEc
Confidence 333456777865578899999999999984
No 70
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=39.15 E-value=1.3e+02 Score=29.17 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=35.6
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEE
Q 036697 75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLV 152 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~ 152 (253)
..+++|+ +.+-++|++..+....++.|. + ++-+ - -.|.||.+.++. .+|.||.|.+.
T Consensus 46 ~tVpAG~---~~f~V~N~~~~~~Efe~~~~~-~-------vv~e-----~--EnIaPG~s~~l~---~~L~pGtY~~~ 102 (375)
T PRK10378 46 LTVNAGK---TQFIIQNHSQKALEWEILKGV-M-------VVEE-----R--ENIAPGFSQKMT---ANLQPGEYDMT 102 (375)
T ss_pred eeeCCCC---EEEEEEeCCCCcceEEeeccc-c-------cccc-----c--cccCCCCceEEE---EecCCceEEee
Confidence 5889995 445559999888776666433 1 1111 1 247788877742 23678888754
No 71
>PLN02171 endoglucanase
Probab=37.82 E-value=1.4e+02 Score=31.02 Aligned_cols=73 Identities=10% Similarity=-0.015 Sum_probs=48.5
Q ss_pred CceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEe--e-ccccccCCeeecCCCceEEeEEeeeeCCceEeEEEEEE
Q 036697 80 GEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQ--N-LTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIV 156 (253)
Q Consensus 80 G~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vq--N-fTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~l~ 156 (253)
..-++..+.++|++..++....| ++.++..+.--+.. | +|--.+. ..|++|+..+|.|.=. +.+..+.+..+
T Consensus 552 ~~y~qy~v~I~N~s~~~ik~i~i-~~~~~~~~iW~v~~~~ngytlPs~~-~sL~aG~s~tFgyI~~---~~pA~~~v~~y 626 (629)
T PLN02171 552 RTYYRYSTTVTNRSAKTLKELHL-GISKLYGPLWGLTKAGYGYVLPSWM-PSLPAGKSLEFVYVHS---ASPADVWVSGY 626 (629)
T ss_pred ceEEEEEEEEEECCCCceeeeee-eeccccccchheeecCCcccCchhh-cccCCCCeeEEEeecC---CCCceEEEEEE
Confidence 35678999999999999998888 77777665322222 1 3333344 4789999999988722 44445555554
Q ss_pred E
Q 036697 157 Y 157 (253)
Q Consensus 157 y 157 (253)
|
T Consensus 627 ~ 627 (629)
T PLN02171 627 K 627 (629)
T ss_pred E
Confidence 4
No 72
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.13 E-value=1e+02 Score=26.78 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=13.4
Q ss_pred eeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccc
Q 036697 76 VVAAGEETELLVGMKNDGESSVNVIAIQASVHLP 109 (253)
Q Consensus 76 ~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P 109 (253)
.++.|+.+...+.++=+-...+++....=++|.+
T Consensus 82 ~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~ 115 (181)
T PF05753_consen 82 RIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDS 115 (181)
T ss_pred EECCCCeEEEEEEEeeeeeEEEEccCEEEEEECC
Confidence 3444444444444443333333333333333333
No 73
>PF07129 DUF1381: Protein of unknown function (DUF1381); InterPro: IPR009812 This entry is represented by Bacteriophage 92, Orf59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=35.72 E-value=73 Score=21.69 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.8
Q ss_pred EeCCceEEEee---ecceEEEEeCCC
Q 036697 158 EVDQHPYQSTF---YNGTIEVVESGG 180 (253)
Q Consensus 158 d~~g~~y~~~~---fN~TVtVvE~~s 180 (253)
|+.|++|.... =|+|-+|||+++
T Consensus 10 dstG~~h~~vtk~rdNqt~tvVeAes 35 (44)
T PF07129_consen 10 DSTGHPHTHVTKARDNQTFTVVEAES 35 (44)
T ss_pred cCCCceeeeeeecccCceEEEEEecc
Confidence 88898888765 699999999986
No 74
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=34.46 E-value=24 Score=19.72 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=8.9
Q ss_pred cchhHHHHHHHHHhh
Q 036697 3 MKNFRVFFFALLLLA 17 (253)
Q Consensus 3 ~~~~~~~~~~~~ll~ 17 (253)
|+++.+.++++||+.
T Consensus 1 MMk~vIIlvvLLliS 15 (19)
T PF13956_consen 1 MMKLVIILVVLLLIS 15 (19)
T ss_pred CceehHHHHHHHhcc
Confidence 456666666666554
No 75
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.36 E-value=23 Score=26.09 Aligned_cols=13 Identities=8% Similarity=0.071 Sum_probs=9.9
Q ss_pred CCcChhHHHHHHH
Q 036697 180 GFISIESVFLVTL 192 (253)
Q Consensus 180 s~fD~e~iFLyl~ 192 (253)
.+|+|-+|-|.++
T Consensus 8 KGlnPGlIVLlvV 20 (69)
T PF04689_consen 8 KGLNPGLIVLLVV 20 (69)
T ss_pred cCCCCCeEEeehH
Confidence 5999999877543
No 76
>PRK11372 lysozyme inhibitor; Provisional
Probab=34.13 E-value=28 Score=27.85 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=12.2
Q ss_pred CccchhHHHHHHHHHh
Q 036697 1 MEMKNFRVFFFALLLL 16 (253)
Q Consensus 1 ~~~~~~~~~~~~~~ll 16 (253)
|+||++++++++++|-
T Consensus 1 ~~mk~ll~~~~~~lL~ 16 (109)
T PRK11372 1 MSMKKLLIICLPVLLT 16 (109)
T ss_pred CchHHHHHHHHHHHHH
Confidence 8999988777766653
No 77
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=33.48 E-value=1.4e+02 Score=26.99 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=13.7
Q ss_pred CccchhHHHHHHHHHhhhc
Q 036697 1 MEMKNFRVFFFALLLLASP 19 (253)
Q Consensus 1 ~~~~~~~~~~~~~~ll~s~ 19 (253)
|+-.|+++.++++..|++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (236)
T PRK11385 1 MTNTWNRLALLIFAVLSLL 19 (236)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 7788888888777666433
No 78
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=33.39 E-value=75 Score=25.35 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCCcceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 71 KNSARVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 71 ~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
.....++-+|++ .+-+.++|.|+.|++|-
T Consensus 9 ~~~~I~ln~gr~-~~~l~V~NtGDRPIQVG 37 (101)
T TIGR00192 9 AEGDITINEGRK-TVSVKVKNTGDRPIQVG 37 (101)
T ss_pred CCCCEEeCCCCc-EEEEEEEeCCCcceEEc
Confidence 333356667766 57889999999999984
No 79
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=33.14 E-value=38 Score=29.17 Aligned_cols=19 Identities=5% Similarity=-0.148 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhhee
Q 036697 190 VTLGIALLVLFGLWIHGQV 208 (253)
Q Consensus 190 yl~lla~~~~~gy~vy~~~ 208 (253)
|++......+++||+...+
T Consensus 99 ~Vl~g~s~l~i~yfvir~~ 117 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTF 117 (163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555667778877655
No 80
>PRK13203 ureB urease subunit beta; Reviewed
Probab=32.89 E-value=78 Score=25.32 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=21.9
Q ss_pred cCCCcceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 70 PKNSARVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 70 p~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
+.....++-+|.+ .+-+.++|.|+.|++|-
T Consensus 8 ~~~~~I~ln~gr~-~~~l~V~NtGDRPIQVG 37 (102)
T PRK13203 8 TADGEIELNAGRE-TVTLTVANTGDRPIQVG 37 (102)
T ss_pred cCCCCEEeCCCCC-EEEEEEEeCCCCceEEc
Confidence 3333345666666 58889999999999984
No 81
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.84 E-value=18 Score=28.28 Aligned_cols=14 Identities=50% Similarity=0.636 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhccc
Q 036697 8 VFFFALLLLASPLL 21 (253)
Q Consensus 8 ~~~~~~~ll~s~~~ 21 (253)
.|+|+.||||+-|+
T Consensus 5 ~~llL~l~LA~lLl 18 (95)
T PF07172_consen 5 AFLLLGLLLAALLL 18 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666665554
No 82
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=32.70 E-value=63 Score=26.93 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=37.7
Q ss_pred CeeEeeccccccCCeeecCCCceEEeEEeee-eCCceEeEEEEEEEEeCCceEE
Q 036697 113 SLLVQNLTGQAFNNATVPVSAQATFPIHFCC-QQPGTFDLVGSIVYEVDQHPYQ 165 (253)
Q Consensus 113 ~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~-l~p~~~~L~i~l~yd~~g~~y~ 165 (253)
+.|+.-++..+|+ ..||=|.+|++.-.-.. +.+|+|.|.+ ||.+|....
T Consensus 79 N~Yv~~~~~g~~g-l~vpLGakA~i~L~~~~~l~~g~Y~l~L---~disG~~w~ 128 (133)
T PF07680_consen 79 NDYVAKVKPGKHG-LVVPLGAKATITLPLPDHLPPGTYTLKL---YDISGITWS 128 (133)
T ss_pred ccEEccccCCcee-EEEEcCCcEEEEecCCCccCCCcEEEEE---EcCCCCeee
Confidence 4456778888999 99999999998877545 9999999874 466665543
No 83
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=32.56 E-value=33 Score=32.08 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhheeec
Q 036697 190 VTLGIALLVLFGLWIHGQVKQ 210 (253)
Q Consensus 190 yl~lla~~~~~gy~vy~~~~~ 210 (253)
.|+++|++++++.+++|-|..
T Consensus 5 iLIIvGaiaI~aLl~hGlwt~ 25 (284)
T TIGR02205 5 ILIIVGILAIAALLFHGLWTS 25 (284)
T ss_pred hHHHHHHHHHHHHHHcccccc
Confidence 456677777777777888853
No 84
>PHA03049 IMV membrane protein; Provisional
Probab=31.89 E-value=60 Score=24.04 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhee
Q 036697 187 VFLVTLGIALLVLFGLWIHGQV 208 (253)
Q Consensus 187 iFLyl~lla~~~~~gy~vy~~~ 208 (253)
++|.++-.|+.|++.|-+|++.
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666777888888888654
No 85
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=31.49 E-value=1.2e+02 Score=25.27 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCCcceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeE
Q 036697 71 KNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPI 139 (253)
Q Consensus 71 ~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y 139 (253)
.++...+..|.++++.+ +|.++.+-.+ .+..+ ..+ ..|+||++.++.+
T Consensus 59 ~P~~I~VkaGD~Vtl~v--tN~d~~~H~f---------------~i~~~---gis-~~I~pGet~TitF 106 (135)
T TIGR03096 59 EPEALVVKKGTPVKVTV--ENKSPISEGF---------------SIDAY---GIS-EVIKAGETKTISF 106 (135)
T ss_pred cCCEEEECCCCEEEEEE--EeCCCCccce---------------EECCC---Ccc-eEECCCCeEEEEE
Confidence 33456899999887766 4877542221 11111 123 6799998876653
No 86
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=31.32 E-value=1.6e+02 Score=27.19 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=25.3
Q ss_pred eCCceEeEEEEEEEEeCCceEEEeeecceEEEE-eCCCCcChhHHHH
Q 036697 144 QQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVV-ESGGFISIESVFL 189 (253)
Q Consensus 144 l~p~~~~L~i~l~yd~~g~~y~~~~fN~TVtVv-E~~s~fD~e~iFL 189 (253)
+.+|+|.+.|.-.|. +..|+++=.|| .-.++|-++-.||
T Consensus 206 L~~G~y~i~I~nnyp-------v~~f~G~K~ivlst~s~~Ggkn~~L 245 (278)
T PF03381_consen 206 LPAGNYTIDITNNYP-------VSSFGGKKSIVLSTTSWFGGKNYFL 245 (278)
T ss_pred CCCceEEEEEEEeec-------ccccCcEEEEEEEeccccCccccHH
Confidence 788888888877763 23344443333 3447898888887
No 87
>PRK13736 conjugal transfer protein TraK; Provisional
Probab=30.05 E-value=4.3e+02 Score=24.04 Aligned_cols=45 Identities=9% Similarity=0.209 Sum_probs=22.4
Q ss_pred eeeCCceEEEEEEEEeCCCCcEEEEEEeeeecc---ccccCeeEeecccccc
Q 036697 76 VVAAGEETELLVGMKNDGESSVNVIAIQASVHL---PFDHSLLVQNLTGQAF 124 (253)
Q Consensus 76 ~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~---P~d~~~~vqNfTa~~~ 124 (253)
.+-+.+++++.|- |++=..|....|.+-+ +.+...++..+...++
T Consensus 42 ~lS~~~pNri~V~----gDkI~~vs~p~g~~~~~~~~~~G~i~vs~~~~~pf 89 (245)
T PRK13736 42 ALSNTSPNLFTVP----GDRITAVSSLDGALTNNEQTASGGVVLATVNKKPF 89 (245)
T ss_pred EEeCCCCcEEEec----CCcEEEeeCCCccccccCCCCCceEEEEecCCCCE
Confidence 4556666666552 3333445566666654 3334445544443333
No 88
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=28.65 E-value=1.7e+02 Score=30.95 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=36.3
Q ss_pred eCCceEEEEEEEEeCCCCc--EEEE-EEeeeeccccc----cCeeEeeccccccCCeeecCCCceEEeEEeee
Q 036697 78 AAGEETELLVGMKNDGESS--VNVI-AIQASVHLPFD----HSLLVQNLTGQAFNNATVPVSAQATFPIHFCC 143 (253)
Q Consensus 78 ~nG~~~~~lvg~~N~g~~~--~~V~-~i~gSf~~P~d----~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~ 143 (253)
..|...++-|.++|.|+.+ -+|+ ++ +.|.. ...-++-| ....++||++.++...+.+
T Consensus 664 ~~~~~i~v~v~V~NtG~~~G~EVvQlYv----~~~~~~~~~P~k~L~gF-----~Kv~L~pGes~~V~~~l~~ 727 (765)
T PRK15098 664 KRDGKVTASVTVTNTGKREGATVVQLYL----QDVTASMSRPVKELKGF-----EKIMLKPGETQTVSFPIDI 727 (765)
T ss_pred cCCCeEEEEEEEEECCCCCccEEEEEec----cCCCCCCCCHHHhccCc-----eeEeECCCCeEEEEEeecH
Confidence 3477889999999999833 2222 33 33321 11123334 3367999999999988776
No 89
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=28.32 E-value=86 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=17.6
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 75 RVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
..+-+|++ .+-+.++|.|+.|++|-
T Consensus 12 I~lN~gr~-~~~l~V~N~GDRPIQVG 36 (100)
T PF00699_consen 12 IELNAGRE-RITLEVTNTGDRPIQVG 36 (100)
T ss_dssp EETTTTSE-EEEEEEEE-SSS-EEEE
T ss_pred EEecCCCc-EEEEEEEeCCCcceEEc
Confidence 45555654 78889999999999984
No 90
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=28.17 E-value=90 Score=25.01 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=22.1
Q ss_pred cCCCcceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 70 PKNSARVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 70 p~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
+.+-..++-+|+++..+. +.|.|+.|++|-
T Consensus 8 ~~~g~IelN~gr~~~~i~-V~NtGDRPIQVG 37 (106)
T COG0832 8 LASGDIELNAGRPTVTIE-VANTGDRPIQVG 37 (106)
T ss_pred ecCccEEEeCCCcceEEE-EeecCCCceEee
Confidence 333345777888866554 999999999984
No 91
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=27.58 E-value=2.9e+02 Score=21.38 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=38.8
Q ss_pred eeeCC-ceEEEEEEEEeCCCCcEEEE-EEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeee----eCCceE
Q 036697 76 VVAAG-EETELLVGMKNDGESSVNVI-AIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC----QQPGTF 149 (253)
Q Consensus 76 ~l~nG-~~~~~lvg~~N~g~~~~~V~-~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~----l~p~~~ 149 (253)
...+| =.+..-+.+.|+...+..+. .+.| +.+ ..++- ..+...|+||+...++..-.. +.++.-
T Consensus 25 ~~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g----~~~--~~l~~----~~~~i~v~~g~~~~~~v~v~~p~~~~~~~~~ 94 (118)
T PF11614_consen 25 ELSDGSIRNQYTLKLTNKTNQPRTYTISVEG----LPG--AELQG----PENTITVPPGETREVPVFVTAPPDALKSGST 94 (118)
T ss_dssp -----SEEEEEEEEEEE-SSS-EEEEEEEES-----SS---EE-E----S--EEEE-TT-EEEEEEEEEE-GGG-SSSEE
T ss_pred EcCCCeEEEEEEEEEEECCCCCEEEEEEEec----CCC--eEEEC----CCcceEECCCCEEEEEEEEEECHHHccCCCe
Confidence 45555 34567788999999998876 5555 223 23311 223368999999999988776 555555
Q ss_pred eEEEEEEE
Q 036697 150 DLVGSIVY 157 (253)
Q Consensus 150 ~L~i~l~y 157 (253)
.+.+.+..
T Consensus 95 ~i~f~v~~ 102 (118)
T PF11614_consen 95 PITFTVTD 102 (118)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 66666663
No 92
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=27.28 E-value=67 Score=25.37 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=22.6
Q ss_pred eCCCCcChhHHHHHHHHHHHHHHHHHHhhh
Q 036697 177 ESGGFISIESVFLVTLGIALLVLFGLWIHG 206 (253)
Q Consensus 177 E~~s~fD~e~iFLyl~lla~~~~~gy~vy~ 206 (253)
|.....|.+.+|-+.|.++++.+..++.|.
T Consensus 52 ~~~d~e~we~~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 52 EKRDWEGWELPFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred CcchHhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 444689999999988888777777666563
No 93
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=27.13 E-value=3.6e+02 Score=22.30 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=45.7
Q ss_pred EEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEeEEEEEEE-EeCCce
Q 036697 85 LLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFDLVGSIVY-EVDQHP 163 (253)
Q Consensus 85 ~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~L~i~l~y-d~~g~~ 163 (253)
-.|.+.|+|+.++++.+=.=...+-+..-..|+---.+--.+ .++||++-+.. ++.++..-.=.+...-.. +.+|..
T Consensus 32 YtitI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP-~l~PG~~y~Yt-Sg~~l~Tp~G~M~GhY~M~~e~G~~ 109 (126)
T COG2967 32 YTVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQP-LLAPGEEYQYT-SGCPLDTPSGTMQGHYEMIDEDGET 109 (126)
T ss_pred EEEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceecccc-ccCCCCceEEc-CCcCccCCcceEEEEEEEecCCCcE
Confidence 457788999999988754444444444444566555555553 68888863322 222232222222222233 788888
Q ss_pred EEEe
Q 036697 164 YQST 167 (253)
Q Consensus 164 y~~~ 167 (253)
|.++
T Consensus 110 F~v~ 113 (126)
T COG2967 110 FDVA 113 (126)
T ss_pred EEee
Confidence 8764
No 94
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=26.75 E-value=21 Score=31.22 Aligned_cols=29 Identities=14% Similarity=-0.129 Sum_probs=0.0
Q ss_pred CcChhHHHHHHHHHHHHHHHHHHhhheee
Q 036697 181 FISIESVFLVTLGIALLVLFGLWIHGQVK 209 (253)
Q Consensus 181 ~fD~e~iFLyl~lla~~~~~gy~vy~~~~ 209 (253)
+-++.-++.|||.-+.+.|.|||.|.++.
T Consensus 40 G~sGsN~~Y~l~vG~t~~gag~YaYkTv~ 68 (180)
T PF14962_consen 40 GGSGSNMVYYLVVGVTVSGAGYYAYKTVK 68 (180)
T ss_dssp -----------------------------
T ss_pred CCCCceEEEEEEECeEEEeeEEEEEEeec
Confidence 34566788888877888889999998884
No 95
>PRK13201 ureB urease subunit beta; Reviewed
Probab=26.62 E-value=1.1e+02 Score=25.74 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCCcceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 71 KNSARVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 71 ~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
......+-+|.+ .+-+.++|.|+.|++|-
T Consensus 9 ~~~~I~lN~gr~-~~~l~V~NtGDRPIQVG 37 (136)
T PRK13201 9 KSTEVEINNHHP-ETVIEVENTGDRPIQVG 37 (136)
T ss_pred CCCCeEeCCCCC-EEEEEEEeCCCcceEec
Confidence 333346666766 48889999999999984
No 96
>smart00676 DM10 Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases.
Probab=26.59 E-value=98 Score=24.37 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=16.8
Q ss_pred ceEEEeee--cceEEEEeCC---CCcCh
Q 036697 162 HPYQSTFY--NGTIEVVESG---GFISI 184 (253)
Q Consensus 162 ~~y~~~~f--N~TVtVvE~~---s~fD~ 184 (253)
..|.+..| ++||+|.|+. +++++
T Consensus 22 R~~~i~yyl~D~Tvei~E~~~~NsG~~~ 49 (104)
T smart00676 22 RRFKIYYYLEDDTIEVFEPDVRNSGILQ 49 (104)
T ss_pred EEEEEEEECCCCeEEEEEcccCCCCCCC
Confidence 35555555 7999999986 68876
No 97
>PRK10386 curli assembly protein CsgE; Provisional
Probab=26.45 E-value=56 Score=27.18 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=9.6
Q ss_pred cchhHHHHHHHHHh-hhc
Q 036697 3 MKNFRVFFFALLLL-ASP 19 (253)
Q Consensus 3 ~~~~~~~~~~~~ll-~s~ 19 (253)
||.++...+|++|| ++|
T Consensus 1 ~~r~~~~~l~~~~l~~~~ 18 (130)
T PRK10386 1 MKRYLRWIVAAELLFAAG 18 (130)
T ss_pred ChhHHHHHHHHHHHHhCc
Confidence 56666555555554 444
No 98
>PRK13528 outer membrane receptor FepA; Provisional
Probab=26.33 E-value=39 Score=34.50 Aligned_cols=19 Identities=16% Similarity=0.203 Sum_probs=12.3
Q ss_pred CccchhHHHHHHHHHhhhc
Q 036697 1 MEMKNFRVFFFALLLLASP 19 (253)
Q Consensus 1 ~~~~~~~~~~~~~~ll~s~ 19 (253)
|+..|+++++.|||.+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (727)
T PRK13528 3 MRVNKILWLLTVLLVGLNS 21 (727)
T ss_pred cccchhhhHHHHHHhhccc
Confidence 6667777666666666444
No 99
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.27 E-value=72 Score=28.47 Aligned_cols=25 Identities=16% Similarity=0.067 Sum_probs=17.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHHhhhe
Q 036697 182 ISIESVFLVTLGIALLVLFGLWIHGQ 207 (253)
Q Consensus 182 fD~e~iFLyl~lla~~~~~gy~vy~~ 207 (253)
.-|+++|..++.++ +.++|||+|-.
T Consensus 21 l~~rlv~~lL~~~~-V~~lGy~f~~s 45 (211)
T COG3167 21 LAPRLVFCLLAVAA-VLGLGYAFYLS 45 (211)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 34788888766655 56788987743
No 100
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=26.26 E-value=14 Score=27.87 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=8.9
Q ss_pred CCCCCccccc
Q 036697 230 ASMDEWLQGT 239 (253)
Q Consensus 230 ~~d~eWIP~~ 239 (253)
.||+|||.+|
T Consensus 39 v~d~~WIE~H 48 (78)
T PF10622_consen 39 VYDEEWIEEH 48 (78)
T ss_pred ccCHHHHHHH
Confidence 6899999887
No 101
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.49 E-value=53 Score=26.51 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 036697 187 VFLVTLGIALLVLFG 201 (253)
Q Consensus 187 iFLyl~lla~~~~~g 201 (253)
||+.+++++++.+++
T Consensus 4 l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 4 LFAIIIVAILLFLFL 18 (130)
T ss_pred eHHHHHHHHHHHHHH
Confidence 344433333333333
No 102
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=25.44 E-value=1.2e+02 Score=24.24 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=19.7
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 75 RVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
.++-+|.+ .+.+.++|.|+.|++|-
T Consensus 13 I~lN~gr~-~~~l~V~NtGDRpIQVG 37 (101)
T cd00407 13 IELNAGRE-AVTLKVKNTGDRPIQVG 37 (101)
T ss_pred eEeCCCCC-EEEEEEEeCCCcceEEc
Confidence 45556655 67889999999999984
No 103
>PLN02604 oxidoreductase
Probab=24.94 E-value=1.1e+02 Score=30.99 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=11.7
Q ss_pred ceeeCCceEEEEEEEEeCC
Q 036697 75 RVVAAGEETELLVGMKNDG 93 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g 93 (253)
..+.-|+. +.|.+.|+-
T Consensus 57 i~~~~Gd~--v~v~v~N~l 73 (566)
T PLN02604 57 ILAQQGDT--VIVELKNSL 73 (566)
T ss_pred EEEECCCE--EEEEEEeCC
Confidence 45666765 467788995
No 104
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=24.73 E-value=2e+02 Score=22.25 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=47.5
Q ss_pred eCCceEEEEEEEEeCCCCc-E--EEEEEeee--eccccccCeeEeeccccccCCeeecCCCceEEeEEeee---eCCceE
Q 036697 78 AAGEETELLVGMKNDGESS-V--NVIAIQAS--VHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC---QQPGTF 149 (253)
Q Consensus 78 ~nG~~~~~lvg~~N~g~~~-~--~V~~i~gS--f~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~---l~p~~~ 149 (253)
+.|...++-+.|.-+.+-. . .|...-|. +..|....-.=++.. .. =.+.+|+..++.+.|.. +.++.|
T Consensus 22 ~~g~~~~i~i~f~~~~~~~~~~~~v~~~~~g~~ip~~~~~~d~C~~~~---~~-CPl~~G~~~~~~~~~~v~~~~P~~~~ 97 (118)
T smart00737 22 VRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPIPGETYDLCKLLG---SK-CPIEKGETVNYTNSLTVPGIFPPGKY 97 (118)
T ss_pred CCCCEEEEEEEEEEcccceEEEEEEEEEECCEEEeccCCCCCccccCC---CC-CCCCCCeeEEEEEeeEccccCCCeEE
Confidence 7788888888887655422 2 23333343 334421100111221 12 35899999888888765 566777
Q ss_pred eEEEEEEEEeCCceEEEeeec
Q 036697 150 DLVGSIVYEVDQHPYQSTFYN 170 (253)
Q Consensus 150 ~L~i~l~yd~~g~~y~~~~fN 170 (253)
.+.+.+ +|.+|+. ++.|+
T Consensus 98 ~v~~~l-~d~~~~~--i~C~~ 115 (118)
T smart00737 98 TVKWEL-TDEDGEE--LACIN 115 (118)
T ss_pred EEEEEE-EcCCCCE--EEEEE
Confidence 766555 4555443 44443
No 105
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.42 E-value=86 Score=30.98 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=8.9
Q ss_pred cchhHHHHHHHHHhhh
Q 036697 3 MKNFRVFFFALLLLAS 18 (253)
Q Consensus 3 ~~~~~~~~~~~~ll~s 18 (253)
|+-+|+++|||+-.++
T Consensus 1 m~~~~~~~l~l~~f~~ 16 (440)
T KOG2357|consen 1 MKIFWIFLLFLIGFAI 16 (440)
T ss_pred ChhHHHHHHHHHHhhc
Confidence 4556666666654333
No 106
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=24.33 E-value=1e+02 Score=24.52 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=36.1
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccc--cccCeeEeeccccccCCeeecCCCceEEeEEeee-eCCceE
Q 036697 75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLP--FDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCC-QQPGTF 149 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P--~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~-l~p~~~ 149 (253)
..+..|+. +.|.++|+-+.+.+|..=+-..... +|... ..+ . ..|+||+ ++.|.|.+ -++|.|
T Consensus 28 I~v~~Gd~--v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~---~~~---~--~~i~pG~--~~~Y~~~~~~~~Gt~ 93 (117)
T PF07732_consen 28 IRVREGDT--VRITVTNNLDEPTSIHWHGLHQPPSPWMDGVP---GVT---Q--CPIAPGE--SFTYEFTANQQAGTY 93 (117)
T ss_dssp EEEETTEE--EEEEEEEESSSGBSEEEETSBSTTGGGGSGGT---TTS---G--SSBSTTE--EEEEEEEESSCSEEE
T ss_pred EEEEcCCe--eEEEEEeccccccccccceeeeeeeeecCCcc---ccc---c--eeEEeec--ceeeeEeeeccccce
Confidence 45566664 5678899998887765433222222 23211 111 1 3688885 78888888 546633
No 107
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=24.31 E-value=73 Score=23.48 Aligned_cols=28 Identities=7% Similarity=-0.199 Sum_probs=20.3
Q ss_pred CcChhHHHHHHHHHHHHHHHHHHhhhee
Q 036697 181 FISIESVFLVTLGIALLVLFGLWIHGQV 208 (253)
Q Consensus 181 ~fD~e~iFLyl~lla~~~~~gy~vy~~~ 208 (253)
+.+||++=|++++.+.+++.+|+.+...
T Consensus 1 ~~~pel~PL~~~vg~a~~~a~~~~~r~l 28 (73)
T PF06522_consen 1 KKHPELYPLFVIVGVAVGGATFYLYRLL 28 (73)
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHH
Confidence 4688999898877776777777755544
No 108
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=24.25 E-value=1e+02 Score=22.93 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhee
Q 036697 187 VFLVTLGIALLVLFGLWIHGQV 208 (253)
Q Consensus 187 iFLyl~lla~~~~~gy~vy~~~ 208 (253)
++|.++-.++.|++.|-+|++.
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4455566677888888888654
No 109
>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=2.4e+02 Score=28.98 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=11.4
Q ss_pred CCCCCCeeEEEEccCCC
Q 036697 57 LSPAPGVDTVCIFPKNS 73 (253)
Q Consensus 57 ~~~sP~v~t~~~Fp~~~ 73 (253)
.+..|-.+..+.|++..
T Consensus 58 ~g~ePatey~~a~~~~~ 74 (602)
T KOG2291|consen 58 IGSEPATEYLLAFEKEL 74 (602)
T ss_pred cCCCchheEEEeccCcc
Confidence 44567777777777753
No 110
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=23.17 E-value=27 Score=25.14 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHhhh
Q 036697 4 KNFRVFFFALLLLAS 18 (253)
Q Consensus 4 ~~~~~~~~~~~ll~s 18 (253)
+||.+++++++||.+
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 367766666666555
No 111
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=22.97 E-value=3.7e+02 Score=21.28 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=38.0
Q ss_pred eCCceEEEEEEEEeCCCCcEEEEEEee-eecccccc---CeeEeeccccccCCeeecCCCceEEeEEeee
Q 036697 78 AAGEETELLVGMKNDGESSVNVIAIQA-SVHLPFDH---SLLVQNLTGQAFNNATVPVSAQATFPIHFCC 143 (253)
Q Consensus 78 ~nG~~~~~lvg~~N~g~~~~~V~~i~g-Sf~~P~d~---~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~ 143 (253)
-.|+. .+.|.|+|.+..+-++..--| +|...... ....+.-. .-.+..+.||+++++.-.+..
T Consensus 16 ~~g~~-~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~--~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 16 GAGQR-HATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGP--PPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred CCCcc-EEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCC--CCCcEEECCCCEEEEEEEEec
Confidence 45555 999999999999888753211 11111111 01222222 223368999999999888877
No 112
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=22.91 E-value=1.5e+02 Score=28.61 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=35.8
Q ss_pred eCCceEeEEEEEEEEeCCceEEEeeecceEEEEeCC-CCcChhHHHH---HHHHHHHHHHHHH
Q 036697 144 QQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESG-GFISIESVFL---VTLGIALLVLFGL 202 (253)
Q Consensus 144 l~p~~~~L~i~l~yd~~g~~y~~~~fN~TVtVvE~~-s~fD~e~iFL---yl~lla~~~~~gy 202 (253)
+.+|.|.|.+..+|- +..|||+=.++=.- +|+-++--|| ||++.+++.++|.
T Consensus 272 L~~G~y~l~i~~Nyp-------v~sf~G~K~~vlst~SwlGgkN~FLgI~YLvVG~ic~~l~~ 327 (351)
T KOG2952|consen 272 LPKGTYQLNITNNYP-------VRSFNGKKKFVLSTTSWLGGKNPFLGIAYLVVGSICILLGL 327 (351)
T ss_pred CCCceEEEEEecccc-------eeecCCceEEEEeeccccccCCccceehHHHHHHHHHHHHH
Confidence 788899999988873 44466666555444 6888888887 7766555544443
No 113
>PRK13204 ureB urease subunit beta; Reviewed
Probab=22.68 E-value=1.4e+02 Score=25.73 Aligned_cols=30 Identities=10% Similarity=0.248 Sum_probs=22.6
Q ss_pred cCCCcceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 70 PKNSARVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 70 p~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
+.....++-+|.+ .+.+.++|.|+.||+|-
T Consensus 31 ~~~~~I~lN~gr~-~~~l~V~NtGDRPIQVG 60 (159)
T PRK13204 31 LAKDPIEINQGRP-RTTLTVRNTGDRPIQIG 60 (159)
T ss_pred eCCCCeEeCCCCc-EEEEEEEeCCCCceEec
Confidence 3433456677776 57889999999999984
No 114
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=22.66 E-value=2.6e+02 Score=20.23 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=26.1
Q ss_pred ceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccc
Q 036697 75 RVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFD 111 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d 111 (253)
..+.+|++.++-=.-.+.....++|..+.|.-..+..
T Consensus 7 ~~~~~g~~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~ 43 (93)
T PF10342_consen 7 TVWTAGQPITITWTSDGTDPGNVTIYLCNGNNTNLNF 43 (93)
T ss_pred CEEECCCcEEEEEeCCCCCCcEEEEEEEcCCCCCcce
Confidence 4788897766555555556788999999988754443
No 115
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=22.36 E-value=3.7e+02 Score=20.78 Aligned_cols=96 Identities=9% Similarity=0.209 Sum_probs=55.2
Q ss_pred eeeCCceEEEEEEE-EeCCC-CcEE--EEEEee-eeccccc-c-Ce-eEeeccc-cccCCeeecCCCceEEeEEeee---
Q 036697 76 VVAAGEETELLVGM-KNDGE-SSVN--VIAIQA-SVHLPFD-H-SL-LVQNLTG-QAFNNATVPVSAQATFPIHFCC--- 143 (253)
Q Consensus 76 ~l~nG~~~~~lvg~-~N~g~-~~~~--V~~i~g-Sf~~P~d-~-~~-~vqNfTa-~~~~~~~V~pg~~atf~Y~F~~--- 143 (253)
.+..|+..++-+.| +++.. +.+. |...-+ .++-|.- . .+ -+=+... .... =.+.+|+..++.|.+..
T Consensus 27 ~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~-CPi~~G~~~~~~~~~~i~~~ 105 (134)
T PF02221_consen 27 PLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLS-CPIKAGEYYTYTYTIPIPKI 105 (134)
T ss_dssp EEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTT-STBTTTEEEEEEEEEEESTT
T ss_pred cccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhccccccc-CccCCCcEEEEEEEEEcccc
Confidence 68899999999999 66554 3343 333333 2333322 1 01 1222211 1112 35999999999999987
Q ss_pred eCCceEeEEEEEEEEeCCceEEEeeecceEEE
Q 036697 144 QQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEV 175 (253)
Q Consensus 144 l~p~~~~L~i~l~yd~~g~~y~~~~fN~TVtV 175 (253)
+.++.|.+.+.+. |.+|+ .+..++=.++|
T Consensus 106 ~p~~~~~i~~~l~-d~~~~--~i~C~~~~v~I 134 (134)
T PF02221_consen 106 YPPGKYTIQWKLT-DQDGE--EIACFEFPVKI 134 (134)
T ss_dssp SSSEEEEEEEEEE-ETTTE--EEEEEEEEEEE
T ss_pred eeeEEEEEEEEEE-eCCCC--EEEEEEEEeEC
Confidence 6667776664443 44443 55777666654
No 116
>PHA03105 EEV glycoprotein; Provisional
Probab=22.03 E-value=33 Score=29.68 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=11.9
Q ss_pred hHHHHHHH-HHHHHHHHHHH--hhhee
Q 036697 185 ESVFLVTL-GIALLVLFGLW--IHGQV 208 (253)
Q Consensus 185 e~iFLyl~-lla~~~~~gy~--vy~~~ 208 (253)
+.|+.|++ ++.++.+++|. ++.+.
T Consensus 3 ~~iv~Y~vv~~SfiiLi~Yll~i~K~~ 29 (188)
T PHA03105 3 IVIVVYVVVPLSFIVLILYIFFICKNT 29 (188)
T ss_pred eEEEEeeehHHHHHHHHHHHHHHHHHH
Confidence 44555643 44555555554 44443
No 117
>PRK13205 ureB urease subunit beta; Reviewed
Probab=22.01 E-value=1.4e+02 Score=25.61 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.7
Q ss_pred cceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 74 ARVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
...+-+|.+ .+.+.++|.|+.||+|-
T Consensus 12 ~IelN~GR~-~i~L~V~NtGDRPIQVG 37 (162)
T PRK13205 12 SLTGNVGRE-AKTIEIINTGDRPVQIG 37 (162)
T ss_pred CeEeCCCCc-EEEEEEEeCCCCceEec
Confidence 345666766 58899999999999984
No 118
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=21.95 E-value=71 Score=28.65 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=15.6
Q ss_pred CccchhHHHHHHHHHhhhc
Q 036697 1 MEMKNFRVFFFALLLLASP 19 (253)
Q Consensus 1 ~~~~~~~~~~~~~~ll~s~ 19 (253)
|.++||+.+++|.|-++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (257)
T PRK10677 1 MARKWLRLFAGAVLSFAVA 19 (257)
T ss_pred CcchHHHHHHHHHHHhhcc
Confidence 8899999999999855443
No 119
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.88 E-value=1.2e+02 Score=20.32 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhh
Q 036697 192 LGIALLVLFGLWIHG 206 (253)
Q Consensus 192 ~lla~~~~~gy~vy~ 206 (253)
++.++|.|+.+|+|.
T Consensus 17 ~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHc
Confidence 344556677777773
No 120
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=21.63 E-value=5.9e+02 Score=22.80 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHhhhcccceeeccCccc
Q 036697 4 KNFRVFFFALLLLASPLLQVAKCQSDSE 31 (253)
Q Consensus 4 ~~~~~~~~~~~ll~s~~~~~~~~~~~~~ 31 (253)
|+|.+|+.+++| +..|..-|+|+..+.
T Consensus 1 r~~~al~a~~~~-~~~~s~~A~A~~~e~ 27 (218)
T PF14283_consen 1 RMLAALCAAVLL-CGGFSVTAFAQGGEP 27 (218)
T ss_pred CHHHHHHHHHHH-HhccCeeEEecCCCC
Confidence 345444444444 444455688884443
No 121
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=21.61 E-value=3.4e+02 Score=20.52 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=35.8
Q ss_pred cceeeCCceEEEEEEEEeCCCCcEEEEEEeeeeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceEe
Q 036697 74 ARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTFD 150 (253)
Q Consensus 74 ~~~l~nG~~~~~lvg~~N~g~~~~~V~~i~gSf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~~ 150 (253)
...+..|+.+ .|+|++..+-++.+..+. .|.+....-.++. .+...+.||++.++ .|.. ||.|.
T Consensus 18 ~i~v~~G~~V----~~~N~~~~~H~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~pG~t~~~--tF~~--~G~y~ 81 (99)
T TIGR02656 18 KISIAAGDTV----EWVNNKGGPHNVVFDEDA--VPAGVKELAKSLS---HKDLLNSPGESYEV--TFST--PGTYT 81 (99)
T ss_pred EEEECCCCEE----EEEECCCCCceEEECCCC--Cccchhhhccccc---ccccccCCCCEEEE--EeCC--CEEEE
Confidence 4588999975 456988777777754432 2222211112221 12245788888665 5553 66654
No 122
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.04 E-value=96 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhee
Q 036697 188 FLVTLGIALLVLFGLWIHGQV 208 (253)
Q Consensus 188 FLyl~lla~~~~~gy~vy~~~ 208 (253)
|+|+.++.++.+++.|+|.+.
T Consensus 4 ~~~~~l~~lvl~L~~~l~~qs 24 (110)
T PF10828_consen 4 YIYIALAVLVLGLGGWLWYQS 24 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556555555556666666443
No 123
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=20.71 E-value=1.5e+02 Score=22.34 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=11.0
Q ss_pred cchhHHHHHHHHHhhhcccceee
Q 036697 3 MKNFRVFFFALLLLASPLLQVAK 25 (253)
Q Consensus 3 ~~~~~~~~~~~~ll~s~~~~~~~ 25 (253)
|++|-+|+++.. +|...|..+
T Consensus 1 MKhFaiLilavV--aSAvVMAyP 21 (78)
T PF11714_consen 1 MKHFAILILAVV--ASAVVMAYP 21 (78)
T ss_pred CchHHHHHHHHH--HHHHHHhcc
Confidence 667766655554 444434333
No 124
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=20.69 E-value=59 Score=24.47 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=16.8
Q ss_pred cchhHHHHHHHHHhhhcccc
Q 036697 3 MKNFRVFFFALLLLASPLLQ 22 (253)
Q Consensus 3 ~~~~~~~~~~~~ll~s~~~~ 22 (253)
||+++++.++++|++.|+.+
T Consensus 1 ~kn~~l~~~vv~l~~~pl~~ 20 (74)
T PF02553_consen 1 MKNLLLLLLVVALAVVPLFL 20 (74)
T ss_pred CceeHHHHHHHHHHHHHHHH
Confidence 68888888888888999765
No 125
>PRK01904 hypothetical protein; Provisional
Probab=20.66 E-value=2.1e+02 Score=25.32 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=8.6
Q ss_pred ceeeCCceEEEEEEEE
Q 036697 75 RVVAAGEETELLVGMK 90 (253)
Q Consensus 75 ~~l~nG~~~~~lvg~~ 90 (253)
.+|++|..+++++.+.
T Consensus 51 l~L~dgg~hQIv~ry~ 66 (219)
T PRK01904 51 FNINDTQVHQVVVRVS 66 (219)
T ss_pred eEeCCCCceEEEEEEe
Confidence 3455555555555554
No 126
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.66 E-value=73 Score=19.14 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=8.8
Q ss_pred cchhHHHHHHHHHhh
Q 036697 3 MKNFRVFFFALLLLA 17 (253)
Q Consensus 3 ~~~~~~~~~~~~ll~ 17 (253)
||++..++++++.|+
T Consensus 7 mKkil~~l~a~~~La 21 (25)
T PF08139_consen 7 MKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHh
Confidence 466666666666543
No 127
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=20.60 E-value=1.5e+02 Score=19.84 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhheeec
Q 036697 191 TLGIALLVLFGLWIHGQVKQ 210 (253)
Q Consensus 191 l~lla~~~~~gy~vy~~~~~ 210 (253)
+..++.++++|.|+|+.+..
T Consensus 16 v~G~~vi~lvglFfYGsYsG 35 (40)
T PF01788_consen 16 VAGIAVIGLVGLFFYGSYSG 35 (40)
T ss_dssp HHHHHHHHHHHHHHHCTTTS
T ss_pred HHHHHHHHHHHHheecccCC
Confidence 34567788899999998754
No 128
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=20.60 E-value=5e+02 Score=25.16 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=50.6
Q ss_pred eCCceE-EEEEEEEeCCCCcEEEEEEee-------eeccccccCeeEeeccccccCCeeecCCCceEEeEEeeeeCCceE
Q 036697 78 AAGEET-ELLVGMKNDGESSVNVIAIQA-------SVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPIHFCCQQPGTF 149 (253)
Q Consensus 78 ~nG~~~-~~lvg~~N~g~~~~~V~~i~g-------Sf~~P~d~~~~vqNfTa~~~~~~~V~pg~~atf~Y~F~~l~p~~~ 149 (253)
..|+.+ +-|+.+.|+|...|...=... ++..+....++ -|-+ . ..|-||+...|...|.|-.+|-|
T Consensus 244 ~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~-Fd~~----~-gvilPGe~~~~~~~F~s~~~Gif 317 (426)
T PF14646_consen 244 HPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFY-FDTS----S-GVILPGETRNFPFMFKSRKVGIF 317 (426)
T ss_pred ccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEE-EeCC----C-CEECCCceEEEEEEEeCCCceEE
Confidence 445444 445559999988777653332 23333333233 2222 2 58999999999999999666644
Q ss_pred eEEEEEEEEe---CCceEEEeeecc
Q 036697 150 DLVGSIVYEV---DQHPYQSTFYNG 171 (253)
Q Consensus 150 ~L~i~l~yd~---~g~~y~~~~fN~ 171 (253)
.=.=-+.... .+...++.++.-
T Consensus 318 ~E~W~L~t~P~l~~~~~l~v~L~G~ 342 (426)
T PF14646_consen 318 KERWELRTFPPLFGGASLTVRLHGV 342 (426)
T ss_pred EEEEEEEEeccccCCCceEEEEEEE
Confidence 4222222221 256677766643
No 129
>PRK13198 ureB urease subunit beta; Reviewed
Probab=20.29 E-value=1.6e+02 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=22.7
Q ss_pred cCCCcceeeCCceEEEEEEEEeCCCCcEEEE
Q 036697 70 PKNSARVVAAGEETELLVGMKNDGESSVNVI 100 (253)
Q Consensus 70 p~~~~~~l~nG~~~~~lvg~~N~g~~~~~V~ 100 (253)
+.....++-+|.+ .+-+.++|.|+.|++|-
T Consensus 36 ~~~g~I~lN~gr~-~~~l~V~NtGDRPIQVG 65 (158)
T PRK13198 36 LAETPITFNENKP-VTKVKVRNTGDRPIQVG 65 (158)
T ss_pred eCCCCeEeCCCCc-EEEEEEEeCCCCceEec
Confidence 3444456777776 57889999999999984
Done!