Your job contains 1 sequence.
>036703
FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI
KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD
DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD
REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA
EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM
ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLP
EFLWK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036703
(365 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 1108 3.8e-114 2
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 1055 1.2e-106 1
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 981 8.2e-99 1
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 934 7.8e-94 1
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 889 4.6e-89 1
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 884 1.6e-88 1
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 884 1.6e-88 1
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 880 4.1e-88 1
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 880 4.1e-88 1
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 879 5.3e-88 1
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 878 6.7e-88 1
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 872 2.9e-87 1
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 869 6.0e-87 1
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 861 4.3e-86 1
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 830 8.2e-83 1
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 810 1.1e-80 1
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 742 1.7e-73 1
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 729 4.1e-72 1
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr... 581 2.0e-56 1
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor... 581 2.0e-56 1
CGD|CAL0004743 - symbol:orf19.332 species:5476 "Candida a... 461 4.1e-43 1
SGD|S000004107 - symbol:CLF1 "Member of the NineTeen Comp... 430 6.2e-40 1
TAIR|locus:2184236 - symbol:AT5G28740 species:3702 "Arabi... 173 7.9e-10 2
ZFIN|ZDB-GENE-030131-4076 - symbol:pdcd11 "programmed cel... 173 2.1e-09 1
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 173 2.2e-09 1
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 173 2.2e-09 1
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 171 3.7e-09 1
FB|FBgn0033859 - symbol:CG6197 species:7227 "Drosophila m... 166 5.2e-09 1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 169 6.1e-09 1
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 169 6.1e-09 1
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 166 1.3e-08 1
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 166 1.3e-08 1
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein... 158 9.8e-08 1
WB|WBGene00016837 - symbol:C50F2.3 species:6239 "Caenorha... 153 1.4e-07 1
UNIPROTKB|P91175 - symbol:C50F2.3 "Protein C50F2.3" speci... 153 1.4e-07 1
POMBASE|SPBC6B1.07 - symbol:prp1 "U4/U6 x U5 tri-snRNP co... 121 1.9e-07 2
UNIPROTKB|F6RY07 - symbol:XAB2 "Uncharacterized protein" ... 137 2.0e-07 2
POMBASE|SPBC211.02c - symbol:cwf3 "complexed with Cdc5 pr... 151 2.1e-07 1
UNIPROTKB|J9PAI6 - symbol:XAB2 "Uncharacterized protein" ... 136 2.2e-07 2
UNIPROTKB|F5H315 - symbol:XAB2 "Pre-mRNA-splicing factor ... 137 2.6e-07 2
UNIPROTKB|Q9HCS7 - symbol:XAB2 "Pre-mRNA-splicing factor ... 137 2.6e-07 2
UNIPROTKB|E2RPV4 - symbol:XAB2 "Uncharacterized protein" ... 136 2.6e-07 2
MGI|MGI:1914689 - symbol:Xab2 "XPA binding protein 2" spe... 134 4.3e-07 2
RGD|621217 - symbol:Xab2 "XPA binding protein 2" species:... 134 4.3e-07 2
UNIPROTKB|F1SCH5 - symbol:XAB2 "Uncharacterized protein" ... 136 5.6e-07 2
ZFIN|ZDB-GENE-040426-685 - symbol:xab2 "XPA binding prote... 147 6.3e-07 1
TAIR|locus:2086132 - symbol:HCF107 "high chlorophyll fluo... 103 1.0e-06 2
ASPGD|ASPL0000046692 - symbol:AN1635 species:162425 "Emer... 94 2.9e-06 2
ZFIN|ZDB-GENE-030616-420 - symbol:prpf39 "PRP39 pre-mRNA ... 103 5.8e-06 2
DICTYBASE|DDB_G0277977 - symbol:xab2 "TPR-like helical do... 138 6.2e-06 1
DICTYBASE|DDB_G0272374 - symbol:prpf6 "pre-mRNA processin... 113 9.9e-06 2
ASPGD|ASPL0000052140 - symbol:AN0111 species:162425 "Emer... 129 1.5e-05 3
ZFIN|ZDB-GENE-040724-10 - symbol:sart3 "squamous cell car... 103 1.6e-05 2
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein... 90 2.4e-05 2
TAIR|locus:2007973 - symbol:CSTF77 species:3702 "Arabidop... 123 2.4e-05 3
UNIPROTKB|E2RMS8 - symbol:UTP6 "Uncharacterized protein" ... 92 3.3e-05 2
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 134 4.3e-05 1
UNIPROTKB|A5PJN6 - symbol:UTP6 "Uncharacterized protein" ... 102 4.5e-05 2
DICTYBASE|DDB_G0283307 - symbol:prpf39 "pre-mRNA processi... 133 4.8e-05 2
UNIPROTKB|Q86UA1 - symbol:PRPF39 "Pre-mRNA-processing fac... 95 6.6e-05 2
UNIPROTKB|F1PV57 - symbol:PRPF39 "Uncharacterized protein... 95 8.3e-05 2
UNIPROTKB|F1N9U0 - symbol:PRPF6 "Uncharacterized protein"... 97 0.00011 2
MGI|MGI:104602 - symbol:Prpf39 "PRP39 pre-mRNA processing... 101 0.00012 2
RGD|1307103 - symbol:Prpf6 "PRP6 pre-mRNA processing fact... 101 0.00013 2
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve... 129 0.00014 1
CGD|CAL0000714 - symbol:orf19.2330 species:5476 "Candida ... 121 0.00018 1
UNIPROTKB|Q59WH2 - symbol:UTP6 "Potential U3 snoRNP prote... 121 0.00018 1
MGI|MGI:1922946 - symbol:Prpf6 "PRP6 pre-mRNA splicing fa... 101 0.00021 2
DICTYBASE|DDB_G0286645 - symbol:cstf3 "cleavage stimulati... 125 0.00022 1
UNIPROTKB|B7ZKM0 - symbol:SART3 "Squamous cell carcinoma ... 124 0.00024 1
UNIPROTKB|E2RPW8 - symbol:PRPF6 "Uncharacterized protein"... 98 0.00028 2
UNIPROTKB|Q9NYH9 - symbol:UTP6 "U3 small nucleolar RNA-as... 90 0.00036 2
RGD|1308702 - symbol:Prpf39 "PRP39 pre-mRNA processing fa... 93 0.00055 2
UNIPROTKB|Q2KJJ0 - symbol:PRPF6 "Pre-mRNA-processing fact... 98 0.00072 2
FB|FBgn0039600 - symbol:CG1646 species:7227 "Drosophila m... 80 0.00079 3
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 1108 (395.1 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 218/351 (62%), Positives = 265/351 (75%)
Query: 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
F++ RN WDR VTL PRVDQLW YI MEE LGN+AGARQIFERWM W PD +GWLS+I
Sbjct: 141 FVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWLSFI 200
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
KF+LRYNE++RAR I+ER V CHP +SA+I +A FEMK GEV R R+VYE A E LAD
Sbjct: 201 KFELRYNEIERARTIYERFVLCHP-KVSAYIRYAKFEMKGGEVARCRSVYERATEK-LAD 258
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
D +EAE LFVAFA+FEE CKE +RAR IYKFALD IPKGRAEDLYRKF+AFEKQYGD
Sbjct: 259 D-EEAEILFVAFAEFEE---RCKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 314
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
+EGIEDAI GK R QYED VRK+P NYD+WFDY+RLEE VGN++R+RE+YERAIANVPPA
Sbjct: 315 KEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPA 374
Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF--IFYFSFSPRMEERRIFKKYI 298
EEKRYWQRYIYLWINYAL++E++ D+ERTRDVYR I + FS +I+
Sbjct: 375 EEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKFS----FAKIWLLAA 430
Query: 299 EMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
+ E+ N+ R++ + +P++ + KY E+E L +R R ++E
Sbjct: 431 QFEIRQLNLTGARQILGNAIGKAPKD-KIFKKYIEIELQLGNMDRCRKLYE 480
Score = 490 (177.5 bits), Expect = 7.7e-49, Sum P(2) = 7.7e-49
Identities = 126/367 (34%), Positives = 197/367 (53%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + SP Q W ++I+ E + AR I+ER++ P ++ Y KF+++
Sbjct: 180 RQIFERWMDWSPD-QQGWLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIRYAKFEMK 238
Query: 66 YNEVQRARHIFERLVQCHPYNLSA---WINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
EV R R ++ER + + A ++ FA+FE + EV+RAR +Y+ A++
Sbjct: 239 GGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRA 298
Query: 123 DEAEQLFVAFAKF--EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
++ + FVAF K ++ G + R Y+ + + P D + ++ E+ G+
Sbjct: 299 EDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNY--DSWFDYVRLEESVGN 356
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYD-TWFDYIRLEE-RVGNQERVREVYERAIANVP 238
++ I + + ++ Y W +Y EE + ER R+VY + +P
Sbjct: 357 KDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIP 416
Query: 239 PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYI 298
++ + +W+ A + E+ +L R + +P+ +IFKKYI
Sbjct: 417 HSKFS-----FAKIWLLAAQF-EIRQLNLTGARQILGNAI----GKAPK---DKIFKKYI 463
Query: 299 EMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358
E+EL LGN+D CRKLYE+YLEWSPENCYAWSKY ELE+SL ETERARAIFELAI+QP LD
Sbjct: 464 EIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPALD 523
Query: 359 LPEFLWK 365
+PE LWK
Sbjct: 524 MPELLWK 530
Score = 214 (80.4 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 82/331 (24%), Positives = 149/331 (45%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKL 64
R+ W+R + R LW Y E V AR +++R + +P + W YI +
Sbjct: 112 RSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEE 171
Query: 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE 124
+ AR IFER + P + W++F FE++ E++RAR +YE V L H +
Sbjct: 172 ILGNIAGARQIFERWMDWSP-DQQGWLSFIKFELRYNEIERARTIYERFV---LC--HPK 225
Query: 125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYGDREG 183
++ +AKFE G E R R +Y+ A +++ AE L+ F FE++ + E
Sbjct: 226 VSA-YIRYAKFEMKG---GEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVER 281
Query: 184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEK 243
K L D + K D + ++ E++ G++E + + E +
Sbjct: 282 AR--FIYKFAL---DHIPKGRAE-DLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVR 335
Query: 244 RYWQRYIYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERRIFK--KY-IE 299
+ Y W +Y +E G+ +R R++Y R + + R +R I+ Y +
Sbjct: 336 KSPSNYDS-WFDYVRLEE-SVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALF 393
Query: 300 MELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
E+ +I+ R +Y + L+ P + ++++K
Sbjct: 394 EEIETEDIERTRDVYRECLKLIPHSKFSFAK 424
Score = 200 (75.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 82/362 (22%), Positives = 155/362 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG----WL 57
I+ R ++R V P+V + Y + E G VA R ++ER + D E ++
Sbjct: 209 IERARTIYERFVLCHPKVSA-YIRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILFV 267
Query: 58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSA--WINFADFEMKMGEVDRARNVYECAVE 115
++ +F+ R EV+RAR I++ + P + + F FE + G+ + +
Sbjct: 268 AFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRR 327
Query: 116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175
D+ ++ + ++ + + + DR R IY+ A+ +P + +++++
Sbjct: 328 FQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLW 387
Query: 176 KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERVREVYE 231
Y E IE + R Y + ++ P + + W + E R N R++
Sbjct: 388 INYALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILG 447
Query: 232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEER 291
AI P + + +++YI + E+ G+++R R +Y Y +SP E
Sbjct: 448 NAIGKAP---KDKIFKKYIEI--------ELQLGNMDRCRKLYER----YLEWSP--ENC 490
Query: 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETERARAI 347
+ KY E+E L + R ++E + PE W Y + E S E ER RA+
Sbjct: 491 YAWSKYAELERSLVETERARAIFELAISQPALDMPE--LLWKAYIDFEISEGELERTRAL 548
Query: 348 FE 349
+E
Sbjct: 549 YE 550
Score = 187 (70.9 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 69/279 (24%), Positives = 125/279 (44%)
Query: 18 RVDQLWNNYIRMEENLGN-------VAGARQI-FERWMHWMP-DHEGWLSYIKFKLRYNE 68
R + L+ ++ E+ G+ + G R+ +E + P +++ W Y++ +
Sbjct: 297 RAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGN 356
Query: 69 VQRARHIFERLVQCHP------Y---NLSAWINFADFE-MKMGEVDRARNVYECAVEIFL 118
R R I+ER + P Y + WIN+A FE ++ +++R R+VY +++
Sbjct: 357 KDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIP 416
Query: 119 ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178
A+ +++ A+FE N AR I A+ + PK + +++K++ E Q
Sbjct: 417 HSKFSFAK-IWLLAAQFEIRQLNLTG---ARQILGNAIGKAPKDK---IFKKYIEIELQL 469
Query: 179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP 238
G+ + + R YE + +P N W Y LE + ER R ++E AI+
Sbjct: 470 GNMD--------RCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPA 521
Query: 239 PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277
+ W+ YI E+ G+LERTR +Y L
Sbjct: 522 LDMPELLWKAYIDF--------EISEGELERTRALYERL 552
Score = 185 (70.2 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 81/316 (25%), Positives = 139/316 (43%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ +N+ W+ +A +E + RAR+V+E A+E D+ L++
Sbjct: 76 RRRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAIE----GDYRN-HTLWL 130
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG----------- 179
+A+FE K + AR ++ A+ +P R + L+ K++ E+ G
Sbjct: 131 KYAEFEMKN---KFVNSARNVWDRAVTLLP--RVDQLWYKYIHMEEILGNIAGARQIFER 185
Query: 180 ------DREGIEDAIAGKMRLQ--------YEDGVRKNPMNYDTWFDYIRLEERVGNQER 225
D++G I ++R YE V +P + Y + E + G R
Sbjct: 186 WMDWSPDQQGWLSFIKFELRYNEIERARTIYERFVLCHP-KVSAYIRYAKFEMKGGEVAR 244
Query: 226 VREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285
R VYERA + EE L++ +A ++E ++ER R +Y+ F
Sbjct: 245 CRSVYERATEKLADDEEAEI------LFVAFAEFEE-RCKEVERARFIYK----FALDHI 293
Query: 286 PRMEERRIFKKYIEMELCLGN---IDPC-----RKLYEKYLEWSPENCYAWSKYTELEKS 337
P+ +++K++ E G+ I+ R YE + SP N +W Y LE+S
Sbjct: 294 PKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEES 353
Query: 338 LDETERARAIFELAIA 353
+ +R R I+E AIA
Sbjct: 354 VGNKDRIREIYERAIA 369
Score = 156 (60.0 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 47/153 (30%), Positives = 75/153 (49%)
Query: 21 QLWNNYIRMEENLGNVAGARQIFERWMHW-MPDHEGWLSYIKFKLRYNEVQRARHIFERL 79
Q+W Y + EE+ + A AR ++ER + +H WL Y +F+++ V AR++++R
Sbjct: 93 QVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRA 152
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
V P W + E +G + AR ++E + D +Q +++F KFE
Sbjct: 153 VTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWM------DWSPDQQGWLSFIKFE--- 203
Query: 140 CNCKETDRARCIY-KFALDRIPKGRAEDLYRKF 171
E +RAR IY +F L PK A Y KF
Sbjct: 204 LRYNEIERARTIYERFVLCH-PKVSAYIRYAKF 235
Score = 154 (59.3 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 60/250 (24%), Positives = 106/250 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWL 57
+D R ++R + SP W+ Y +E +L AR IFE + MP+ W
Sbjct: 472 MDRCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPALDMPELL-WK 530
Query: 58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF 117
+YI F++ E++R R ++ERL+ + W++FA FE E++ N E E
Sbjct: 531 AYIDFEISEGELERTRALYERLLD-RTKHYKVWVSFAKFEASAAELEEDENEDEDQEEDV 589
Query: 118 LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ 177
+ D ++ F DRA YK + + + RA L +L E
Sbjct: 590 IEHKKDCIKRARAIF-------------DRANTYYKDSTPELKEERAT-LLEDWLNMESS 635
Query: 178 YGDREGIEDAIAGKM--RLQYEDGVRKNP--MNYDTWFDYIRLEE-RVGNQERVREVYER 232
+G+ G + K+ +L+ + + Y+ + DY+ EE + N + + Y+
Sbjct: 636 FGNL-GDVSIVQSKLPKKLKKRKAITREDGSTEYEEYIDYLYPEESQTTNLKILEAAYKW 694
Query: 233 AIANVPPAEE 242
V +E+
Sbjct: 695 KKQKVAASED 704
Score = 130 (50.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 73/298 (24%), Positives = 122/298 (40%)
Query: 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE 115
W+ Y +++ + RAR ++ER ++ N + W+ +A+FEMK V+ ARNV++ AV
Sbjct: 95 WVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVT 154
Query: 116 IFLADD-----HDEAEQLF--VAFAK--FEEMGCNCKETDRARCIYKFALDRIPKGRAED 166
+ D + E++ +A A+ FE + KF L RA
Sbjct: 155 LLPRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWLSFIKFELRYNEIERART 214
Query: 167 LYRKF-LAFEK-----QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV 220
+Y +F L K +Y E ++ + R YE K + + ++ E
Sbjct: 215 IYERFVLCHPKVSAYIRYAKFE-MKGGEVARCRSVYERATEKLADDEEAEILFVAFAEF- 272
Query: 221 GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280
+ER +EV ERA A + R L+ + + E GD E D F
Sbjct: 273 --EERCKEV-ERARFIYKFALDHIPKGRAEDLYRKFVAF-EKQYGDKEGIEDAIVGKRRF 328
Query: 281 YFSFSPRMEERRI--FKKYIEMELCLGNIDPCRKLYEKYLEWSP--ENCYAWSKYTEL 334
+ R + Y+ +E +GN D R++YE+ + P E W +Y L
Sbjct: 329 QYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYL 386
Score = 115 (45.5 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 37/131 (28%), Positives = 63/131 (48%)
Query: 213 YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRD 272
YI +E ++GN +R R++YER + P Y W YA E++ +E R
Sbjct: 462 YIEIELQLGNMDRCRKLYERYLEWSP---------ENCYAWSKYA---ELERSLVETERA 509
Query: 273 VYRTLFIFYFSFSPRME-ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY 331
R +F S P ++ ++K YI+ E+ G ++ R LYE+ L+ + ++ W +
Sbjct: 510 --RAIFELAIS-QPALDMPELLWKAYIDFEISEGELERTRALYERLLDRT-KHYKVWVSF 565
Query: 332 TELEKSLDETE 342
+ E S E E
Sbjct: 566 AKFEASAAELE 576
Score = 38 (18.4 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 334 LEKSLDETERARAIFELA 351
+E D +RARAIF+ A
Sbjct: 590 IEHKKDCIKRARAIFDRA 607
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 209/352 (59%), Positives = 262/352 (74%)
Query: 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
F+++ RN WDR VTL PRVDQLW YI MEE LGNV GARQIFERWM+W PD + WL +I
Sbjct: 127 FVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQKAWLCFI 186
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG-EVDRARNVYECAVEIFLA 119
KF+LRYNE++RAR I+ER V CHP +SA+I +A FEMK G +V AR VYE AV+ LA
Sbjct: 187 KFELRYNEIERARSIYERFVLCHP-KVSAFIRYAKFEMKRGGQVKLAREVYERAVDK-LA 244
Query: 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179
+D +EAE LFV+FA+FEE CKE +RAR IYKFALD I KGRAE+LY+KF+AFEKQYG
Sbjct: 245 ND-EEAEILFVSFAEFEE---RCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQYG 300
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
D+EGIEDAI GK R +YED V KNP+NYD+WFDY+RLEE VGN++R+RE+YERAIANVPP
Sbjct: 301 DKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPP 360
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF--IFYFSFSPRMEERRIFKKY 297
A+EKR+WQRYIYLWINYALY+E++ D+ERTRDVYR I + FS +I+
Sbjct: 361 AQEKRFWQRYIYLWINYALYEEIETKDVERTRDVYRECLKLIPHTKFS----FAKIWLLA 416
Query: 298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
E E+ N+ R++ + +P+ + KY E+E L +R R ++E
Sbjct: 417 AEYEIRQLNLTGARQILGNAIGKAPK-VKIFKKYIEMELKLVNIDRCRKLYE 467
Score = 469 (170.2 bits), Expect = 1.6e-44, P = 1.6e-44
Identities = 132/372 (35%), Positives = 198/372 (53%)
Query: 6 RNAWDRVVTLSPRVDQ-LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKL 64
R ++R + SP DQ W +I+ E + AR I+ER++ P ++ Y KF++
Sbjct: 166 RQIFERWMNWSP--DQKAWLCFIKFELRYNEIERARSIYERFVLCHPKVSAFIRYAKFEM 223
Query: 65 -RYNEVQRARHIFERLVQCHPYNLSA---WINFADFEMKMGEVDRARNVYECAVEIFLAD 120
R +V+ AR ++ER V + A +++FA+FE + EV+RAR +Y+ A++
Sbjct: 224 KRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKG 283
Query: 121 DHDEAEQLFVAFAKF--EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178
+E + FVAF K ++ G + R Y+ + + P D + ++ E+
Sbjct: 284 RAEELYKKFVAFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNY--DSWFDYVRLEESV 341
Query: 179 GDREGI----EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERA 233
G+++ I E AIA Q + ++ Y W +Y EE + ER R+VY
Sbjct: 342 GNKDRIREIYERAIANVPPAQEKRFWQR--YIY-LWINYALYEEIETKDVERTRDVYREC 398
Query: 234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRI 293
+ +P + + +W+ A Y E+ +L R + +P++ +I
Sbjct: 399 LKLIPHTKFS-----FAKIWLLAAEY-EIRQLNLTGARQILGNAI----GKAPKV---KI 445
Query: 294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA 353
FKKYIEMEL L NID CRKLYE++LEWSPENCYAW Y E E SL ETERARAIFELAI+
Sbjct: 446 FKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAIS 505
Query: 354 QPILDLPEFLWK 365
QP LD+PE LWK
Sbjct: 506 QPALDMPELLWK 517
Score = 214 (80.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 85/332 (25%), Positives = 152/332 (45%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKL 64
R+ W+R + R LW Y E V AR +++R + +P + W YI +
Sbjct: 98 RSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEE 157
Query: 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE 124
+ V AR IFER + P + AW+ F FE++ E++RAR++YE V L H +
Sbjct: 158 KLGNVTGARQIFERWMNWSP-DQKAWLCFIKFELRYNEIERARSIYERFV---LC--HPK 211
Query: 125 AEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYGDRE 182
F+ +AKFE + G K AR +Y+ A+D++ AE L+ F FE++ + E
Sbjct: 212 VSA-FIRYAKFEMKRGGQVK---LAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVE 267
Query: 183 GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242
K L D +RK + + ++ E++ G++E + + E
Sbjct: 268 RAR--FIYKFAL---DHIRKGRAE-ELYKKFVAFEKQYGDKEGIEDAIVGKKRFEYEDEV 321
Query: 243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERRIFK--KY-I 298
+ Y W +Y +E G+ +R R++Y R + + R +R I+ Y +
Sbjct: 322 SKNPLNYDS-WFDYVRLEE-SVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYAL 379
Query: 299 EMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
E+ +++ R +Y + L+ P ++++K
Sbjct: 380 YEEIETKDVERTRDVYRECLKLIPHTKFSFAK 411
Score = 207 (77.9 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 59/218 (27%), Positives = 105/218 (48%)
Query: 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARH 74
+P+V +++ YI ME L N+ R+++ER++ W P++ W +Y +F++ E +RAR
Sbjct: 440 APKV-KIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARA 498
Query: 75 IFERLVQCHPYNLSA--WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132
IFE + ++ W + DFE+ GE ++ R +YE + D + +++++F
Sbjct: 499 IFELAISQPALDMPELLWKTYIDFEISEGEFEKTRALYERLL------DRTKHCKVWISF 552
Query: 133 AKFEEMGCNCKET---------DRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG---D 180
AKFE KE DRA YK + + RA L +L E +G D
Sbjct: 553 AKFEASASEHKEDGIKSARVIFDRANTYYKDTTPELEEERAT-LLEDWLNMETGFGELGD 611
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE 218
++ + K++ + Y+ +FDY+ EE
Sbjct: 612 VSVVQSKLPKKLKKRKMTSREDGSTEYEEYFDYLFPEE 649
Score = 184 (69.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 80/341 (23%), Positives = 150/341 (43%)
Query: 21 QLWNNYIRMEENLGNVAGARQIFERWMHW-MPDHEGWLSYIKFKLRYNEVQRARHIFERL 79
Q+W Y + EE+ + A AR ++ER + +H W+ Y +F+++ V AR++++R
Sbjct: 79 QVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRS 138
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
V P W + E K+G V AR ++E + + D ++ ++ F KFE
Sbjct: 139 VTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMN-WSPD-----QKAWLCFIKFE--- 189
Query: 140 CNCKETDRARCIY-KFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
E +RAR IY +F L PK A Y KF E + G + +A ++ + D
Sbjct: 190 LRYNEIERARSIYERFVLCH-PKVSAFIRYAKF---EMKRGGQV----KLAREVYERAVD 241
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
+ + + + EER ER R +Y+ A+ ++ + +++++ Y
Sbjct: 242 KLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQYGD 301
Query: 259 YKEVDAGDLERTRDVYRTLF----IFYFSFSP--RMEERRIFKKYIE--MELCLGNIDPC 310
+ ++ + + R Y + Y S+ R+EE K I E + N+ P
Sbjct: 302 KEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPA 361
Query: 311 --RKLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIF 348
++ +++Y+ Y W Y E+ + ER R ++
Sbjct: 362 QEKRFWQRYI-------YLWINYALYEEIETKDVERTRDVY 395
Score = 181 (68.8 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 82/316 (25%), Positives = 142/316 (44%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ +N+ W+ +A +E + RAR+V+E A+E L+V
Sbjct: 62 RRRKEFEDQIRRARWNIQVWVKYAKWEESQMDYARARSVWERALE-----GEYRNHTLWV 116
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE----- 185
+A+FE K + AR ++ ++ +P R + L+ K++ E++ G+ G
Sbjct: 117 KYAEFEMKN---KFVNNARNVWDRSVTLLP--RVDQLWEKYIYMEEKLGNVTGARQIFER 171
Query: 186 ------DAIAG----KMRLQYEDGVRKNPM---------NYDTWFDYIRLEERVGNQERV 226
D A K L+Y + R + + Y + E + G Q ++
Sbjct: 172 WMNWSPDQKAWLCFIKFELRYNEIERARSIYERFVLCHPKVSAFIRYAKFEMKRGGQVKL 231
Query: 227 -REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285
REVYERA+ + EE L++++A ++E ++ER R +Y+ F
Sbjct: 232 AREVYERAVDKLANDEEAEI------LFVSFAEFEE-RCKEVERARFIYK--FALDHIRK 282
Query: 286 PRMEERRIFKKYIEMELCLGN---IDPC-----RKLYEKYLEWSPENCYAWSKYTELEKS 337
R EE ++KK++ E G+ I+ R YE + +P N +W Y LE+S
Sbjct: 283 GRAEE--LYKKFVAFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEES 340
Query: 338 LDETERARAIFELAIA 353
+ +R R I+E AIA
Sbjct: 341 VGNKDRIREIYERAIA 356
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 64/280 (22%), Positives = 126/280 (45%)
Query: 18 RVDQLWNNYIRMEENLGN-------VAGARQI-FERWMHWMP-DHEGWLSYIKFKLRYNE 68
R ++L+ ++ E+ G+ + G ++ +E + P +++ W Y++ +
Sbjct: 284 RAEELYKKFVAFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGN 343
Query: 69 VQRARHIFERLVQCHP----------YNLSAWINFADFE-MKMGEVDRARNVYECAVEIF 117
R R I+ER + P Y + WIN+A +E ++ +V+R R+VY +++
Sbjct: 344 KDRIREIYERAIANVPPAQEKRFWQRY-IYLWINYALYEEIETKDVERTRDVYRECLKLI 402
Query: 118 LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ 177
A+ +++ A++E N AR I A+ + PK + +++K++ E +
Sbjct: 403 PHTKFSFAK-IWLLAAEYEIRQLNLTG---ARQILGNAIGKAPKVK---IFKKYIEMELK 455
Query: 178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANV 237
+ + + R YE + +P N W +Y E + ER R ++E AI+
Sbjct: 456 LVNID--------RCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAISQ- 506
Query: 238 PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277
PA + LW Y + E+ G+ E+TR +Y L
Sbjct: 507 -PALDMPE-----LLWKTYIDF-EISEGEFEKTRALYERL 539
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 69/322 (21%), Positives = 136/322 (42%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP---DHEGWLSYIKF 62
R ++ V+ +P W +Y+R+EE++GN R+I+ER + +P + W YI
Sbjct: 314 RFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYL 373
Query: 63 KLRY--------NEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV 114
+ Y +V+R R ++ ++ P+ +FA + E + R +
Sbjct: 374 WINYALYEEIETKDVERTRDVYRECLKLIPHTK---FSFAKIWLLAAEYE-IRQLNLTGA 429
Query: 115 EIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174
L + +A ++ + F K+ EM DR R +Y+ L+ P+ +R + F
Sbjct: 430 RQILGNAIGKAPKVKI-FKKYIEMELKLVNIDRCRKLYERFLEWSPENCYA--WRNYAEF 486
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT--WFDYIRLEERVGNQERVREVYER 232
E + E + R +E + + ++ W YI E G E+ R +YER
Sbjct: 487 EISLAETE--------RARAIFELAISQPALDMPELLWKTYIDFEISEGEFEKTRALYER 538
Query: 233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-----LERTRDVYRTLFIFYFSFSPR 287
+ ++ +WI++A + E A + ++ R ++ +Y +P
Sbjct: 539 LLDRT----------KHCKVWISFAKF-EASASEHKEDGIKSARVIFDRANTYYKDTTPE 587
Query: 288 MEERR--IFKKYIEMELCLGNI 307
+EE R + + ++ ME G +
Sbjct: 588 LEEERATLLEDWLNMETGFGEL 609
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 40/135 (29%), Positives = 62/135 (45%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWL 57
ID R ++R + SP W NY E +L AR IFE + MP+ W
Sbjct: 459 IDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAISQPALDMPELL-WK 517
Query: 58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE-----VDRARNVYEC 112
+YI F++ E ++ R ++ERL+ + WI+FA FE E + AR +++
Sbjct: 518 TYIDFEISEGEFEKTRALYERLLD-RTKHCKVWISFAKFEASASEHKEDGIKSARVIFDR 576
Query: 113 AVEIFLADDHDEAEQ 127
A + D E E+
Sbjct: 577 A-NTYYKDTTPELEE 590
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 43/144 (29%), Positives = 70/144 (48%)
Query: 213 YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRD 272
YI +E ++ N +R R++YER + P Y W NYA + E+ + ER R
Sbjct: 449 YIEMELKLVNIDRCRKLYERFLEWSP---------ENCYAWRNYAEF-EISLAETERARA 498
Query: 273 VYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYT 332
++ L I + M E ++K YI+ E+ G + R LYE+ L+ + ++C W +
Sbjct: 499 IFE-LAISQPALD--MPEL-LWKTYIDFEISEGEFEKTRALYERLLDRT-KHCKVWISFA 553
Query: 333 ELEKSLDETER-----ARAIFELA 351
+ E S E + AR IF+ A
Sbjct: 554 KFEASASEHKEDGIKSARVIFDRA 577
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 179/274 (65%), Positives = 223/274 (81%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR V + PRVDQ W YI MEE LGN+ GAR+IFERWM W PD + WL +IK
Sbjct: 122 VNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQAWLCFIK 181
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+LRYNE++R+R I+ER V CHP S++I +A FEMK +V AR VYE A+E+ L D
Sbjct: 182 FELRYNEIERSRSIYERFVLCHP-KASSFIRYAKFEMKNSQVSLARIVYERAIEM-LKDV 239
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
+EAE +FVAFA+FEE+ CKE +RAR +YK+ALD IPKGRAEDLY+KF+AFEKQYG++
Sbjct: 240 EEEAEMIFVAFAEFEEL---CKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNK 296
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
EGI+DAI G+ +LQYE VRKNP+NYD+WFDYI LEE +G+++R+REVYERAIANVP AE
Sbjct: 297 EGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVYERAIANVPLAE 356
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR 275
EKRYWQRYIYLWI+YAL++E+ A D+ERTR VYR
Sbjct: 357 EKRYWQRYIYLWIDYALFEEILAEDVERTRAVYR 390
Score = 215 (80.7 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 84/327 (25%), Positives = 146/327 (44%)
Query: 3 DHGRNAWDRVVT-LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
D R+ W+R + S R LW Y E +V AR +++R + +P + W YI
Sbjct: 88 DRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILPRVDQFWYKYI 147
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ + AR IFER + P + AW+ F FE++ E++R+R++YE V L
Sbjct: 148 HMEEILGNIDGARKIFERWMDWSP-DQQAWLCFIKFELRYNEIERSRSIYERFV---LC- 202
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
H +A F+ +AKFE + AR +Y+ A++ + K E+ F+AF +
Sbjct: 203 -HPKASS-FIRYAKFEMKN---SQVSLARIVYERAIEML-KDVEEEAEMIFVAFAEF--- 253
Query: 181 REGIEDAIAGKMRLQYE-DGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
E ++ + +Y D + K D + ++ E++ GN+E + +
Sbjct: 254 EELCKEVERARFLYKYALDHIPKGRAE-DLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYE 312
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERRIFK--K 296
E ++ Y W +Y +E GD +R R+VY R + + R +R I+
Sbjct: 313 GEVRKNPLNYDS-WFDYISLEET-LGDKDRIREVYERAIANVPLAEEKRYWQRYIYLWID 370
Query: 297 YIEMELCLG-NIDPCRKLYEKYLEWSP 322
Y E L +++ R +Y + L P
Sbjct: 371 YALFEEILAEDVERTRAVYRECLNLIP 397
Score = 199 (75.1 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 83/329 (25%), Positives = 151/329 (45%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ N W+ +AD+E + DRAR+V+E A+E D+ L++
Sbjct: 55 RRRKEFEDQIRGAKTNSQVWVRYADWEESQKDHDRARSVWERALE----DESYRNHTLWL 110
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE----- 185
+A+FE K + AR ++ A+ +P R + + K++ E+ G+ +G
Sbjct: 111 KYAEFEMRN---KSVNHARNVWDRAVKILP--RVDQFWYKYIHMEEILGNIDGARKIFER 165
Query: 186 ------DAIAG----KMRLQYEDGVRKNPMNYD----------TWFDYIRLEERVGNQER 225
D A K L+Y + + ++ Y+ ++ Y + E +
Sbjct: 166 WMDWSPDQQAWLCFIKFELRYNE-IERSRSIYERFVLCHPKASSFIRYAKFEMKNSQVSL 224
Query: 226 VREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285
R VYERAI + EE+ +++ +A ++E+ ++ER R +Y+ +
Sbjct: 225 ARIVYERAIEMLKDVEEEAEM-----IFVAFAEFEEL-CKEVERARFLYK----YALDHI 274
Query: 286 PRMEERRIFKKYIEMELCLGN---IDPC----RKL-YEKYLEWSPENCYAWSKYTELEKS 337
P+ ++KK++ E GN ID RKL YE + +P N +W Y LE++
Sbjct: 275 PKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDYISLEET 334
Query: 338 LDETERARAIFELAIAQ-PILDLPEFLWK 365
L + +R R ++E AIA P+ + + W+
Sbjct: 335 LGDKDRIREVYERAIANVPLAEEKRY-WQ 362
Score = 192 (72.6 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 87/345 (25%), Positives = 150/345 (43%)
Query: 21 QLWNNYIRMEENLGNVAGARQIFERWMH--WMPDHEGWLSYIKFKLRYNEVQRARHIFER 78
Q+W Y EE+ + AR ++ER + +H WL Y +F++R V AR++++R
Sbjct: 72 QVWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDR 131
Query: 79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
V+ P W + E +G +D AR ++E + D +Q ++ F KFE
Sbjct: 132 AVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWM------DWSPDQQAWLCFIKFE-- 183
Query: 139 GCNCKETDRARCIY-KFALDRIPKGRAEDLYRKFLAFEKQYG-DREGIEDAIAGKMRLQY 196
E +R+R IY +F L PK + Y KF Q R E AI +M
Sbjct: 184 -LRYNEIERSRSIYERFVLCH-PKASSFIRYAKFEMKNSQVSLARIVYERAI--EMLKDV 239
Query: 197 EDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINY 256
E+ M + + ++ EE ER R +Y+ A+ ++P + +++++ Y
Sbjct: 240 EEEAE---MIFVAFAEF---EELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQY 293
Query: 257 ALYKEVD-----------AGDLERTRDVYRTLFIFYFSFSPRMEER-RIFKKYIEMELCL 304
+ +D G++ + Y + F Y S + ++ RI + Y E +
Sbjct: 294 GNKEGIDDAIVGRRKLQYEGEVRKNPLNYDSWFD-YISLEETLGDKDRIREVY---ERAI 349
Query: 305 GNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSL-DETERARAIF 348
N+ P L E+ W Y W Y E+ L ++ ER RA++
Sbjct: 350 ANV-P---LAEEKRYWQ-RYIYLWIDYALFEEILAEDVERTRAVY 389
Score = 187 (70.9 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 67/248 (27%), Positives = 118/248 (47%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
ID R ++R + SP Q W +I+ E + +R I+ER++ P ++ Y K
Sbjct: 156 IDGARKIFERWMDWSPD-QQAWLCFIKFELRYNEIERSRSIYERFVLCHPKASSFIRYAK 214
Query: 62 FKLRYNEVQRARHIFERLVQC-HPYNLSA---WINFADFEMKMGEVDRARNVYECAVEIF 117
F+++ ++V AR ++ER ++ A ++ FA+FE EV+RAR +Y+ A++
Sbjct: 215 FEMKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDHI 274
Query: 118 LADDHDEAEQLFVAFAKF--EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175
++ + FVAF K + G + R + Y+ + + P D + +++ E
Sbjct: 275 PKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNY--DSWFDYISLE 332
Query: 176 KQYGDREGI----EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQ-ERVREVY 230
+ GD++ I E AIA + L E + + Y W DY EE + ER R VY
Sbjct: 333 ETLGDKDRIREVYERAIAN-VPLAEEKRYWQRYI-Y-LWIDYALFEEILAEDVERTRAVY 389
Query: 231 ERAIANVP 238
+ +P
Sbjct: 390 RECLNLIP 397
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 191/352 (54%), Positives = 247/352 (70%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++ RN WDR V+L PRVDQLW +I MEE LGN+AGARQI ERW+H PD + WL +IK
Sbjct: 107 VNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIK 166
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+L+YNE++ AR I+ER V CHP +SA+I +A FEMK G+V+ A V+E A + LADD
Sbjct: 167 FELKYNEIECARSIYERFVLCHP-KVSAYIRYAKFEMKHGQVELAMKVFERAKKE-LADD 224
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
+EAE LFVAFA+FEE YKFALD+IPKGRAE+LY KF+AFEKQ GD+
Sbjct: 225 -EEAEILFVAFAEFEEQ-------------YKFALDQIPKGRAENLYSKFVAFEKQNGDK 270
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP-- 239
EGIEDAI GK R QYED VRKNP+NYD+WFD++RLEE VGN++R+RE+YERA+ANVPP
Sbjct: 271 EGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPE 330
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF--IFYFSFSPRMEERRIFKKY 297
A+EKRYWQRYIYLWINYA + E+ D+E TRDVYR I + FS +I+
Sbjct: 331 AQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFS----FAKIWLLA 386
Query: 298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
+ E+ N+ R++ + +P++ + KY E+E L +R R ++E
Sbjct: 387 AQHEIRQLNLTGARQILGNAIGKAPKD-KIFKKYIEIELQLRNIDRCRKLYE 437
Score = 401 (146.2 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 117/353 (33%), Positives = 173/353 (49%)
Query: 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV 80
Q W +I+ E + AR I+ER++ P ++ Y KF++++ +V+ A +FER
Sbjct: 159 QAWLCFIKFELKYNEIECARSIYERFVLCHPKVSAYIRYAKFEMKHGQVELAMKVFERAK 218
Query: 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF--EEM 138
+ + A I F F E + Y+ A++ + FVAF K ++
Sbjct: 219 KELADDEEAEILFVAF----AEFEEQ---YKFALDQIPKGRAENLYSKFVAFEKQNGDKE 271
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAE-DLYRKFLAFEKQYGDREGI----EDAIAGKMR 193
G + RC Y+ D + K D + F+ E+ G+++ I E A+A
Sbjct: 272 GIEDAIIGKRRCQYE---DEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPP 328
Query: 194 LQYEDGVRKNPMNYDTWFDYIRLEERVGNQ-ERVREVYERAIANVPPAEEKRYWQRYIYL 252
+ ++ Y W +Y E V E R+VY + +P ++ + +
Sbjct: 329 PEAQEKRYWQRYIY-LWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFS-----FAKI 382
Query: 253 WINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK 312
W+ A E+ +L R + +P+ +IFKKYIE+EL L NID CRK
Sbjct: 383 WL-LAAQHEIRQLNLTGARQILGNAI----GKAPK---DKIFKKYIEIELQLRNIDRCRK 434
Query: 313 LYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
LYE+YLEWSP NCYAW KY E E SL ETER RAIFELAI+QP LD+PE LWK
Sbjct: 435 LYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWK 487
Score = 184 (69.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 50/168 (29%), Positives = 84/168 (50%)
Query: 35 NVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA 94
N+ GARQI + P + + YI+ +L+ + R R ++ER ++ P N AW +A
Sbjct: 395 NLTGARQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYA 454
Query: 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF 154
+FEM + E +R R ++E A+ D E L+ + FE + E +R R +Y+
Sbjct: 455 EFEMSLAETERTRAIFELAIS---QPALDMPELLWKTYIDFE---ISEGELERTRALYER 508
Query: 155 ALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202
LDR + + KF A ++ + E EDAI K +DG+++
Sbjct: 509 LLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERK-----KDGIKR 551
Score = 177 (67.4 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 45/164 (27%), Positives = 82/164 (50%)
Query: 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARH 74
+P+ D+++ YI +E L N+ R+++ER++ W P + W Y +F++ E +R R
Sbjct: 410 APK-DKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRA 468
Query: 75 IFERLVQCHPYNLSA--WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132
IFE + ++ W + DFE+ GE++R R +YE + D + +++V F
Sbjct: 469 IFELAISQPALDMPELLWKTYIDFEISEGELERTRALYERLL------DRTKHCKVWVDF 522
Query: 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
AKFE KE + + D I RA +++ + + K
Sbjct: 523 AKFEASAAEHKEDEEEEDAIERKKDGIK--RAREIFDRANTYNK 564
Score = 164 (62.8 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 79/305 (25%), Positives = 134/305 (43%)
Query: 69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ- 127
+ + R +E V+ +P N +W +F E +G DR R +YE AV + E
Sbjct: 278 IGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYW 337
Query: 128 -----LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDRE 182
L++ +A F EM ++ + R +Y+ L IP + + K Q+ R+
Sbjct: 338 QRYIYLWINYAFFAEMVT--EDVESTRDVYRACLKLIPHSKFS--FAKIWLLAAQHEIRQ 393
Query: 183 GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242
+ + G ++ + + K P + + YI +E ++ N +R R++YER + P
Sbjct: 394 -LN--LTGARQI-LGNAIGKAPKD-KIFKKYIEIELQLRNIDRCRKLYERYLEWSPGN-- 446
Query: 243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMEL 302
Y W YA + E+ + ERTR ++ L I + M E ++K YI+ E+
Sbjct: 447 -------CYAWRKYAEF-EMSLAETERTRAIFE-LAISQPALD--MPEL-LWKTYIDFEI 494
Query: 303 CLGNIDPCRKLYEKYLE-------WSP----ENCYAWSKYTE-----LEKSLDETERARA 346
G ++ R LYE+ L+ W E A K E +E+ D +RAR
Sbjct: 495 SEGELERTRALYERLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRARE 554
Query: 347 IFELA 351
IF+ A
Sbjct: 555 IFDRA 559
Score = 158 (60.7 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 46/160 (28%), Positives = 78/160 (48%)
Query: 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERL 79
Q+W Y E +V AR +++R + +P + W +I + + + AR I ER
Sbjct: 92 QVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERW 151
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ C P + AW+ F FE+K E++ AR++YE V L H + ++ +AKFE
Sbjct: 152 IHCSP-DQQAWLCFIKFELKYNEIECARSIYERFV---LC--HPKVSA-YIRYAKFE--- 201
Query: 140 CNCKETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQY 178
+ + A +++ A + AE L+ F FE+QY
Sbjct: 202 MKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEEQY 241
Score = 157 (60.3 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 70/281 (24%), Positives = 123/281 (43%)
Query: 18 RVDQLWNNYIRMEENLGN-------VAGARQI-FERWMHWMP-DHEGWLSYIKFKLRYNE 68
R + L++ ++ E+ G+ + G R+ +E + P +++ W +++ +
Sbjct: 252 RAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGN 311
Query: 69 VQRARHIFERLVQCHP--------Y---NLSAWINFADF-EMKMGEVDRARNVYECAVEI 116
R R I+ER V P Y + WIN+A F EM +V+ R+VY +++
Sbjct: 312 KDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKL 371
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
A+ +++ A+ E N AR I A+ + PK + +++K++ E
Sbjct: 372 IPHSKFSFAK-IWLLAAQHEIRQLNLTG---ARQILGNAIGKAPKDK---IFKKYIEIEL 424
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
Q I+ + R YE + +P N W Y E + ER R ++E AI+
Sbjct: 425 QL---RNID-----RCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQ 476
Query: 237 VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277
PA + LW Y + E+ G+LERTR +Y L
Sbjct: 477 --PALDMPE-----LLWKTYIDF-EISEGELERTRALYERL 509
Score = 137 (53.3 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 69/302 (22%), Positives = 128/302 (42%)
Query: 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE 115
W+ Y F+++ V AR++++R V P W F E K+G + AR + E +
Sbjct: 94 WVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWIH 153
Query: 116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIY-KFALDRIPKGRAEDLYRKF--- 171
+ D +Q ++ F KFE E + AR IY +F L PK A Y KF
Sbjct: 154 C--SPD----QQAWLCFIKFE---LKYNEIECARSIYERFVLCH-PKVSAYIRYAKFEMK 203
Query: 172 -----LA---FE---KQYGDREGIEDAIAG--KMRLQYEDGVRKNPMNY--DTWFDYIRL 216
LA FE K+ D E E + QY+ + + P + + ++
Sbjct: 204 HGQVELAMKVFERAKKELADDEEAEILFVAFAEFEEQYKFALDQIPKGRAENLYSKFVAF 263
Query: 217 EERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT 276
E++ G++E + + E ++ Y W ++ +E G+ +R R++Y
Sbjct: 264 EKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDS-WFDFVRLEET-VGNKDRIREIYER 321
Query: 277 LFIFYFSFSPRMEERRIFKKYIEM--------ELCLGNIDPCRKLYEKYLEWSPENCYAW 328
P +E+R +++YI + E+ +++ R +Y L+ P + +++
Sbjct: 322 AVANVPP--PEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSF 379
Query: 329 SK 330
+K
Sbjct: 380 AK 381
Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 80/364 (21%), Positives = 151/364 (41%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I+ R+ ++R V P+V + Y + E G V A ++FER + D E + ++
Sbjct: 174 IECARSIYERFVLCHPKVSA-YIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFV 232
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVY----ECAVEI 116
F + E + + +++ + NL + F FE + G+ + + C E
Sbjct: 233 AFA-EFEE--QYKFALDQIPKGRAENL--YSKFVAFEKQNGDKEGIEDAIIGKRRCQYED 287
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED--LYRKFLAF 174
+ + + F F + EE N DR R IY+ A+ +P A++ +++++
Sbjct: 288 EVRKNPLNYDSWF-DFVRLEETVGN---KDRIREIYERAVANVPPPEAQEKRYWQRYIYL 343
Query: 175 EKQYGD-REGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERVREV 229
Y E + + + R Y ++ P + + W + E R N R++
Sbjct: 344 WINYAFFAEMVTEDVEST-RDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQI 402
Query: 230 YERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME 289
AI P + + +++YI + E+ +++R R +Y Y +SP
Sbjct: 403 LGNAIGKAP---KDKIFKKYIEI--------ELQLRNIDRCRKLYER----YLEWSPG-- 445
Query: 290 ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETERAR 345
++KY E E+ L + R ++E + PE W Y + E S E ER R
Sbjct: 446 NCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPE--LLWKTYIDFEISEGELERTR 503
Query: 346 AIFE 349
A++E
Sbjct: 504 ALYE 507
Score = 124 (48.7 bits), Expect = 0.00015, P = 0.00015
Identities = 32/105 (30%), Positives = 49/105 (46%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWL 57
ID R ++R + SP W Y E +L R IFE + MP+ W
Sbjct: 429 IDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPELL-WK 487
Query: 58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102
+YI F++ E++R R ++ERL+ + W++FA FE E
Sbjct: 488 TYIDFEISEGELERTRALYERLLD-RTKHCKVWVDFAKFEASAAE 531
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 178/349 (51%), Positives = 230/349 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR +T PRV+Q W Y MEE LGN+AGARQ+FERWM W P+ + W SYI
Sbjct: 172 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYIN 231
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+LRY EV RAR I+ER V HP ++ WI +A FE K G AR VYE AVE F D+
Sbjct: 232 FELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHGYFAHARKVYERAVEFF-GDE 289
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
H + E L+VAFAKFEE N KE +R R IYK+ALDRI K A++L++ + FEK++GDR
Sbjct: 290 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDR 345
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
GIED I K R QYE+ V+ NP NYD WFDY+RL E E VREVYERAIANVPP +
Sbjct: 346 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQ 405
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
EKR+W+RYIYLW+NYALY+E++A D ERTR VY+ +L + + +++ Y +
Sbjct: 406 EKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWLLYAQF 462
Query: 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
E+ N+ R+ + P+N + Y ELE L E +R R ++E
Sbjct: 463 EIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 510
Score = 416 (151.5 bits), Expect = 3.0e-38, P = 3.0e-38
Identities = 119/371 (32%), Positives = 187/371 (50%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + P +Q W++YI E V AR I+ER++ PD + W+ Y +F+ +
Sbjct: 210 RQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEK 268
Query: 66 YNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
+ AR ++ER V+ + ++ FA FE E +R R +Y+ A++
Sbjct: 269 HGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRI---SK 325
Query: 123 DEAEQLFVAFAKFEE-MGCNCKETDRARCIYKFALDRIPKGRAE--DLYRKFLAFEKQYG 179
EA++LF + FE+ G D +F + K D + +L +
Sbjct: 326 QEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDA 385
Query: 180 D----REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERAI 234
+ RE E AIA +Q + ++ Y W +Y EE + ER R+VY+ ++
Sbjct: 386 EAETVREVYERAIANVPPIQEKRHWKR--YIY-LWVNYALYEELEAKDPERTRQVYQASL 442
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+P K++ + +W+ YA + E+ +L R T S + + ++F
Sbjct: 443 ELIP---HKKF--TFAKMWLLYAQF-EIRQKNLPFARRALGT------SIG-KCPKNKLF 489
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354
K YIE+EL L D CRKLYEK+LE+ PENC +W K+ ELE L + ERARAI+ELAI+Q
Sbjct: 490 KGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQ 549
Query: 355 PILDLPEFLWK 365
P LD+PE LWK
Sbjct: 550 PRLDMPEVLWK 560
Score = 207 (77.9 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 88/356 (24%), Positives = 152/356 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I R+ ++R + + R LW Y ME V AR I++R + +P ++ W Y
Sbjct: 138 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 197
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ + AR +FER ++ P AW ++ +FE++ EVDRAR +YE V +
Sbjct: 198 YMEEMLGNIAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLV---- 252
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI-PKGRAEDLYRKFLAFEKQYG 179
H + + ++ +A+FEE AR +Y+ A++ + E LY F FE+
Sbjct: 253 -HPDVKN-WIKYARFEEKHGYFAH---ARKVYERAVEFFGDEHMDEHLYVAFAKFEENQK 307
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+ E + + K L D + K + + +Y E++ G++ + ++
Sbjct: 308 EFERVR--VIYKYAL---DRISKQEAQ-ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYE 361
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E K Y W +Y E DA + E R+VY + +R ++
Sbjct: 362 EEVKANPHNYD-AWFDYLRLVESDA-EAETVREVYERAIANVPPIQEKRHWKRYIYLWVN 419
Query: 300 MELC--LGNIDP--CRKLYEKYLEWSPENCYAWSK----YTELE---KSLDETERA 344
L L DP R++Y+ LE P + ++K Y + E K+L RA
Sbjct: 420 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRA 475
Score = 199 (75.1 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 88/366 (24%), Positives = 157/366 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEG---WL 57
+D R ++R V + P V W Y R EE G A AR+++ER + + D H ++
Sbjct: 239 VDRARTIYERFVLVHPDVKN-WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYV 297
Query: 58 SYIKFKLRYNEVQRARHIF----ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
++ KF+ E +R R I+ +R+ + L + N+ FE K G DR R + +
Sbjct: 298 AFAKFEENQKEFERVRVIYKYALDRISKQEAQEL--FKNYTIFEKKFG--DR-RGIEDII 352
Query: 114 VEI--FLADDHDEAE-QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
V F ++ +A + A+ + + + E + R +Y+ A+ +P + + +++
Sbjct: 353 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKR 412
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERV 226
++ Y E +E + R Y+ + P T W Y + E R N
Sbjct: 413 YIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFA 472
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R +I P + + ++ YI L E+ + +R R +Y + F P
Sbjct: 473 RRALGTSIGKCP---KNKLFKGYIEL--------ELQLREFDRCRKLYEK----FLEFGP 517
Query: 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETE 342
E + K+ E+E LG+I+ R +YE + PE W Y + E +ETE
Sbjct: 518 --ENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPE--VLWKSYIDFEIEQEETE 573
Query: 343 RARAIF 348
R R ++
Sbjct: 574 RTRNLY 579
Score = 196 (74.1 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 81/329 (24%), Positives = 141/329 (42%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ + +S WI +A +E + E+ RAR++YE A+++ D+
Sbjct: 106 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV----DYRN----IT 157
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190
+ K+ EM ++ + AR I+ A+ +P R + K+ E+ G+ G
Sbjct: 158 LWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNIAGARQVFER 215
Query: 191 KMRLQYEDGVRKNPMNYD------------------------TWFDYIRLEERVGNQERV 226
M Q E+ + +N++ W Y R EE+ G
Sbjct: 216 WMEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHGYFAHA 275
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R+VYERA+ +E + ++Y + +A ++E + + ER R +Y+ +
Sbjct: 276 RKVYERAVEFF--GDE--HMDEHLY--VAFAKFEE-NQKEFERVRVIYK----YALDRIS 324
Query: 287 RMEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEKSL 338
+ E + +FK Y E G+ + R YE+ ++ +P N AW Y L +S
Sbjct: 325 KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 384
Query: 339 DETERARAIFELAIAQ--PILDLPEFLWK 365
E E R ++E AIA PI + WK
Sbjct: 385 AEAETVREVYERAIANVPPIQEKRH--WK 411
Score = 191 (72.3 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 81/341 (23%), Positives = 152/341 (44%)
Query: 8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGWLS 58
A DR+ +L+ NY E+ G+ G I +E + P +++ W
Sbjct: 319 ALDRIS--KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFD 376
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHP----------YNLSAWINFADFE-MKMGEVDRAR 107
Y++ E + R ++ER + P Y + W+N+A +E ++ + +R R
Sbjct: 377 YLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRY-IYLWVNYALYEELEAKDPERTR 435
Query: 108 NVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL 167
VY+ ++E+ A+ +++ +A+FE K AR ++ + PK + L
Sbjct: 436 QVYQASLELIPHKKFTFAK-MWLLYAQFE---IRQKNLPFARRALGTSIGKCPKNK---L 488
Query: 168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR 227
++ ++ E Q RE + R YE + P N +W + LE +G+ ER R
Sbjct: 489 FKGYIELELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERAR 540
Query: 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
+YE AI+ P + LW +Y + E++ + ERTR++YR L R
Sbjct: 541 AIYELAISQ-PRLDMPEV------LWKSYIDF-EIEQEETERTRNLYRRLL-------QR 585
Query: 288 MEERRIFKKYIEMELCL---GNIDPCRKLYEKYLEWSPENC 325
+ +++ + + EL G++ CR++YE+ + + NC
Sbjct: 586 TQHVKVWISFAQFELSSRKEGSLAKCRQIYEEANK-TMRNC 625
Score = 179 (68.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 79/343 (23%), Positives = 145/343 (42%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE+L + AR I+ER + D+ WL Y + +++ +V AR+I++R
Sbjct: 125 WIKYAQWEESLKEIQRARSIYERALD--VDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 182
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ P W + E +G + AR V+E +E EQ + ++ FE
Sbjct: 183 ITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWME------WQPEEQAWHSYINFE--- 233
Query: 140 CNCKETDRARCIY-KFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
KE DRAR IY +F L P + + K+ FE+++G A A K+ + +
Sbjct: 234 LRYKEVDRARTIYERFVLVH-PDVKN---WIKYARFEEKHG-----YFAHARKVYERAVE 284
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
M+ + + + EE ERVR +Y+ A+ + E + ++ Y +
Sbjct: 285 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGD 344
Query: 259 YKEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIEM-ELCLGNIDPC 310
+ ++ + + R Y + +F + +E + E+ E + N+ P
Sbjct: 345 RRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPP- 403
Query: 311 RKLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
+ EK W Y W Y E+ + ER R +++ ++
Sbjct: 404 --IQEKR-HWK-RYIYLWVNYALYEELEAKDPERTRQVYQASL 442
Score = 160 (61.4 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 45/149 (30%), Positives = 73/149 (48%)
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+++ D E + D K R +ED +RKN W Y + EE + +R R +YERA+
Sbjct: 91 QQKITDEEELNDYKLRK-RKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 149
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ Y R I LW+ YA E+ + R+++ + PR+ + +
Sbjct: 150 -------DVDY--RNITLWLKYA-EMEMKNRQVNHARNIWDRAI----TTLPRVNQ--FW 193
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPE 323
KY ME LGNI R+++E+++EW PE
Sbjct: 194 YKYTYMEEMLGNIAGARQVFERWMEWQPE 222
Score = 158 (60.7 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + P W + +E LG++ AR I+E + MP+ W S
Sbjct: 503 DRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKS 561
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM---KMGEVDRARNVYECAVE 115
YI F++ E +R R+++ RL+Q ++ WI+FA FE+ K G + + R +YE A +
Sbjct: 562 YIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFAQFELSSRKEGSLAKCRQIYEEANK 620
Query: 116 IFL-ADDHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGR 163
++ +E L ++ FE E G +D+ R + K +++ K R
Sbjct: 621 TMRNCEEKEERLMLLESWRSFEDEFGT---VSDKER-VDKLMPEKVKKRR 666
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 54/244 (22%), Positives = 103/244 (42%)
Query: 22 LWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSYIKFKLRYNEVQRARHI 75
LW NY EE + RQ+++ + +P + WL Y +F++R + AR
Sbjct: 416 LWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRA 475
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
+ P N + + + E+++ E DR R +YE +E + ++ KF
Sbjct: 476 LGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEF--------GPENCTSWIKF 526
Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195
E+ + +RAR IY+ A+ + E L++ ++ FE IE + R
Sbjct: 527 AELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEETERTRNL 578
Query: 196 YEDGVRKNPMNYDTWFDYIRLE---ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYL 252
Y +++ + W + + E + G+ + R++YE A + EEK +
Sbjct: 579 YRRLLQRT-QHVKVWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLES 637
Query: 253 WINY 256
W ++
Sbjct: 638 WRSF 641
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 179/349 (51%), Positives = 229/349 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR +T PRV+Q W Y MEE LGNVAGARQ+FERWM W P+ + W SYI
Sbjct: 280 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 339
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+LRY EV RAR I+ER V HP ++ WI +A FE K AR VYE AVE F D+
Sbjct: 340 FELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHAYFAHARKVYERAVEFF-GDE 397
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
H + E L+VAFAKFEE N KE +R R IYK+ALDRI K A++L++ + FEK++GDR
Sbjct: 398 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDR 453
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
GIED I K R QYE+ V+ NP NYD WFDY+RL E E VREVYERAIANVPP +
Sbjct: 454 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQ 513
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
EKR+W+RYIYLWINYALY+E++A D ERTR VY+ +L + + +++ Y +
Sbjct: 514 EKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWILYAQF 570
Query: 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
E+ N+ R+ + P+N + Y ELE L E +R R ++E
Sbjct: 571 EIRQKNLSLARRALGTSIGKCPKN-KLFKVYIELELQLREFDRCRKLYE 618
Score = 417 (151.9 bits), Expect = 3.9e-38, P = 3.9e-38
Identities = 117/370 (31%), Positives = 186/370 (50%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + P +Q W++YI E V AR I+ER++ PD + W+ Y +F+ +
Sbjct: 318 RQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEK 376
Query: 66 YNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
+ AR ++ER V+ + ++ FA FE E +R R +Y+ A++ D
Sbjct: 377 HAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDA 436
Query: 123 DEAEQLFVAFAK-F-EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
E + + F K F + G + R Y+ + P D + +L + +
Sbjct: 437 QELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNY--DAWFDYLRLVESDAE 494
Query: 181 REGI----EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERAIA 235
E + E AIA +Q + ++ Y W +Y EE + ER R+VY+ ++
Sbjct: 495 AEAVREVYERAIANVPPIQEKRHWKR--YIY-LWINYALYEELEAKDPERTRQVYQASLE 551
Query: 236 NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFK 295
+P K++ + +WI YA + E+ +L R T S + + ++FK
Sbjct: 552 LIP---HKKF--TFAKMWILYAQF-EIRQKNLSLARRALGT------SIG-KCPKNKLFK 598
Query: 296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355
YIE+EL L D CRKLYEK+LE+ PENC +W K+ ELE L + +RARAI+ELAI+QP
Sbjct: 599 VYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQP 658
Query: 356 ILDLPEFLWK 365
LD+PE LWK
Sbjct: 659 RLDMPEVLWK 668
Score = 213 (80.0 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 90/356 (25%), Positives = 152/356 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I R+ ++R + + R LW Y ME V AR I++R + +P ++ W Y
Sbjct: 246 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 305
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ V AR +FER ++ P AW ++ +FE++ EVDRAR +YE V +
Sbjct: 306 YMEEMLGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLV---- 360
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI-PKGRAEDLYRKFLAFEKQYG 179
H + + ++ +A+FEE AR +Y+ A++ + E LY F FE+
Sbjct: 361 -HPDVKN-WIKYARFEEKHAYFAH---ARKVYERAVEFFGDEHMDEHLYVAFAKFEENQK 415
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+ E + + K L D + K + + +Y E++ G++ + ++
Sbjct: 416 EFERVR--VIYKYAL---DRISKQDAQ-ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYE 469
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E K Y W +Y E DA + E R+VY + +R +I
Sbjct: 470 EEVKANPHNYD-AWFDYLRLVESDA-EAEAVREVYERAIANVPPIQEKRHWKRYIYLWIN 527
Query: 300 MELC--LGNIDP--CRKLYEKYLEWSPENCYAWSK----YTELE---KSLDETERA 344
L L DP R++Y+ LE P + ++K Y + E K+L RA
Sbjct: 528 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRA 583
Score = 196 (74.1 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 88/366 (24%), Positives = 156/366 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEG---WL 57
+D R ++R V + P V W Y R EE A AR+++ER + + D H ++
Sbjct: 347 VDRARTIYERFVLVHPDVKN-WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 405
Query: 58 SYIKFKLRYNEVQRARHIF----ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
++ KF+ E +R R I+ +R+ + L + N+ FE K G DR R + +
Sbjct: 406 AFAKFEENQKEFERVRVIYKYALDRISKQDAQEL--FKNYTIFEKKFG--DR-RGIEDII 460
Query: 114 VEI--FLADDHDEAE-QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
V F ++ +A + A+ + + + E + R +Y+ A+ +P + + +++
Sbjct: 461 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKR 520
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERV 226
++ Y E +E + R Y+ + P T W Y + E R N
Sbjct: 521 YIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLA 580
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R +I P + + ++ YI L E+ + +R R +Y + F P
Sbjct: 581 RRALGTSIGKCP---KNKLFKVYIEL--------ELQLREFDRCRKLYEK----FLEFGP 625
Query: 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETE 342
E + K+ E+E LG+ID R +YE + PE W Y + E +ETE
Sbjct: 626 --ENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPE--VLWKSYIDFEIEQEETE 681
Query: 343 RARAIF 348
R R ++
Sbjct: 682 RTRNLY 687
Score = 192 (72.6 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 78/328 (23%), Positives = 148/328 (45%)
Query: 21 QLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGWLSYIKFKLRYNEVQR 71
+L+ NY E+ G+ G I +E + P +++ W Y++ E +
Sbjct: 438 ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEA 497
Query: 72 ARHIFERLVQCHP----------YNLSAWINFADFE-MKMGEVDRARNVYECAVEIFLAD 120
R ++ER + P Y + WIN+A +E ++ + +R R VY+ ++E+
Sbjct: 498 VREVYERAIANVPPIQEKRHWKRY-IYLWINYALYEELEAKDPERTRQVYQASLELIPHK 556
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
A+ +++ +A+FE K AR ++ + PK + L++ ++ E Q
Sbjct: 557 KFTFAK-MWILYAQFE---IRQKNLSLARRALGTSIGKCPKNK---LFKVYIELELQL-- 607
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
RE + R YE + P N +W + LE +G+ +R R +YE AI+ P
Sbjct: 608 RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQ-PRL 660
Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM 300
+ LW +Y + E++ + ERTR++YR L R + +++ + +
Sbjct: 661 DMPEV------LWKSYIDF-EIEQEETERTRNLYRRLL-------QRTQHVKVWISFAQF 706
Query: 301 ELCLG---NIDPCRKLYEKYLEWSPENC 325
EL G ++ CR++YE+ + + NC
Sbjct: 707 ELSSGKEGSLTKCRQIYEEANK-TMRNC 733
Score = 187 (70.9 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 79/329 (24%), Positives = 140/329 (42%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ + +S WI +A +E + E+ RAR++YE A+++ D+
Sbjct: 214 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV----DYRN----IT 265
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190
+ K+ EM ++ + AR I+ A+ +P R + K+ E+ G+ G
Sbjct: 266 LWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNVAGARQVFER 323
Query: 191 KMRLQYEDGVRKNPMNYD------------------------TWFDYIRLEERVGNQERV 226
M Q E+ + +N++ W Y R EE+
Sbjct: 324 WMEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHA 383
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R+VYERA+ +E + ++Y + +A ++E + + ER R +Y+ +
Sbjct: 384 RKVYERAVEFF--GDE--HMDEHLY--VAFAKFEE-NQKEFERVRVIYK----YALDRIS 432
Query: 287 RMEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEKSL 338
+ + + +FK Y E G+ + R YE+ ++ +P N AW Y L +S
Sbjct: 433 KQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 492
Query: 339 DETERARAIFELAIAQ--PILDLPEFLWK 365
E E R ++E AIA PI + WK
Sbjct: 493 AEAEAVREVYERAIANVPPIQEKRH--WK 519
Score = 171 (65.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 78/343 (22%), Positives = 144/343 (41%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE+L + AR I+ER + D+ WL Y + +++ +V AR+I++R
Sbjct: 233 WIKYAQWEESLKEIQRARSIYERALD--VDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 290
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ P W + E +G V AR V+E +E EQ + ++ FE
Sbjct: 291 ITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWME------WQPEEQAWHSYINFE--- 341
Query: 140 CNCKETDRARCIY-KFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
KE DRAR IY +F L P + + K+ FE+++ A A K+ + +
Sbjct: 342 LRYKEVDRARTIYERFVLVH-PDVKN---WIKYARFEEKHA-----YFAHARKVYERAVE 392
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
M+ + + + EE ERVR +Y+ A+ + + + ++ Y +
Sbjct: 393 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGD 452
Query: 259 YKEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIEM-ELCLGNIDPC 310
+ ++ + + R Y + +F + +E + E+ E + N+ P
Sbjct: 453 RRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPP- 511
Query: 311 RKLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
+ EK W Y W Y E+ + ER R +++ ++
Sbjct: 512 --IQEKR-HWK-RYIYLWINYALYEELEAKDPERTRQVYQASL 550
Score = 160 (61.4 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 45/169 (26%), Positives = 82/169 (48%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + P W + +E LG++ AR I+E + MP+ W S
Sbjct: 611 DRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVL-WKS 669
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM---KMGEVDRARNVYECAVE 115
YI F++ E +R R+++ RL+Q ++ WI+FA FE+ K G + + R +YE A +
Sbjct: 670 YIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANK 728
Query: 116 IFL-ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163
++ +E L ++ FEE + +R + K +++ K R
Sbjct: 729 TMRNCEEKEERLMLLESWRSFEEEFGTASDKER---VDKLMPEKVKKRR 774
Score = 159 (61.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 44/149 (29%), Positives = 73/149 (48%)
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+++ D E + D K R +ED +RKN W Y + EE + +R R +YERA+
Sbjct: 199 QQKITDEEELNDYKLRK-RKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 257
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ Y R I LW+ YA E+ + R+++ + PR+ + +
Sbjct: 258 -------DVDY--RNITLWLKYA-EMEMKNRQVNHARNIWDRAI----TTLPRVNQ--FW 301
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPE 323
KY ME LGN+ R+++E+++EW PE
Sbjct: 302 YKYTYMEEMLGNVAGARQVFERWMEWQPE 330
Score = 143 (55.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 59/258 (22%), Positives = 109/258 (42%)
Query: 22 LWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSYIKFKLRYNEVQRARHI 75
LW NY EE + RQ+++ + +P + W+ Y +F++R + AR
Sbjct: 524 LWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRA 583
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
+ P N + + + E+++ E DR R +YE +E + ++ KF
Sbjct: 584 LGTSIGKCPKNKLFKV-YIELELQLREFDRCRKLYEKFLEF--------GPENCTSWIKF 634
Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195
E+ + DRAR IY+ A+ + E L++ ++ FE IE + R
Sbjct: 635 AELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEETERTRNL 686
Query: 196 YEDGVRKNPMNYDTWFDYIRLE---ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYL 252
Y +++ + W + + E + G+ + R++YE A + EEK +
Sbjct: 687 YRRLLQRT-QHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLES 745
Query: 253 WINYALYKEVD-AGDLER 269
W ++ +E A D ER
Sbjct: 746 WRSFE--EEFGTASDKER 761
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 179/349 (51%), Positives = 229/349 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR +T PRV+Q W Y MEE LGNVAGARQ+FERWM W P+ + W SYI
Sbjct: 292 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 351
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+LRY EV RAR I+ER V HP ++ WI +A FE K AR VYE AVE F D+
Sbjct: 352 FELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHAYFAHARKVYERAVEFF-GDE 409
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
H + E L+VAFAKFEE N KE +R R IYK+ALDRI K A++L++ + FEK++GDR
Sbjct: 410 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDR 465
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
GIED I K R QYE+ V+ NP NYD WFDY+RL E E VREVYERAIANVPP +
Sbjct: 466 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQ 525
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
EKR+W+RYIYLWINYALY+E++A D ERTR VY+ +L + + +++ Y +
Sbjct: 526 EKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWILYAQF 582
Query: 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
E+ N+ R+ + P+N + Y ELE L E +R R ++E
Sbjct: 583 EIRQKNLSLARRALGTSIGKCPKN-KLFKVYIELELQLREFDRCRKLYE 630
Score = 417 (151.9 bits), Expect = 4.0e-38, P = 4.0e-38
Identities = 117/370 (31%), Positives = 186/370 (50%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + P +Q W++YI E V AR I+ER++ PD + W+ Y +F+ +
Sbjct: 330 RQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEK 388
Query: 66 YNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
+ AR ++ER V+ + ++ FA FE E +R R +Y+ A++ D
Sbjct: 389 HAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDA 448
Query: 123 DEAEQLFVAFAK-F-EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
E + + F K F + G + R Y+ + P D + +L + +
Sbjct: 449 QELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNY--DAWFDYLRLVESDAE 506
Query: 181 REGI----EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERAIA 235
E + E AIA +Q + ++ Y W +Y EE + ER R+VY+ ++
Sbjct: 507 AEAVREVYERAIANVPPIQEKRHWKR--YIY-LWINYALYEELEAKDPERTRQVYQASLE 563
Query: 236 NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFK 295
+P K++ + +WI YA + E+ +L R T S + + ++FK
Sbjct: 564 LIP---HKKF--TFAKMWILYAQF-EIRQKNLSLARRALGT------SIG-KCPKNKLFK 610
Query: 296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355
YIE+EL L D CRKLYEK+LE+ PENC +W K+ ELE L + +RARAI+ELAI+QP
Sbjct: 611 VYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQP 670
Query: 356 ILDLPEFLWK 365
LD+PE LWK
Sbjct: 671 RLDMPEVLWK 680
Score = 213 (80.0 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 90/356 (25%), Positives = 152/356 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I R+ ++R + + R LW Y ME V AR I++R + +P ++ W Y
Sbjct: 258 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 317
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ V AR +FER ++ P AW ++ +FE++ EVDRAR +YE V +
Sbjct: 318 YMEEMLGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLV---- 372
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI-PKGRAEDLYRKFLAFEKQYG 179
H + + ++ +A+FEE AR +Y+ A++ + E LY F FE+
Sbjct: 373 -HPDVKN-WIKYARFEEKHAYFAH---ARKVYERAVEFFGDEHMDEHLYVAFAKFEENQK 427
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+ E + + K L D + K + + +Y E++ G++ + ++
Sbjct: 428 EFERVR--VIYKYAL---DRISKQDAQ-ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYE 481
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E K Y W +Y E DA + E R+VY + +R +I
Sbjct: 482 EEVKANPHNYD-AWFDYLRLVESDA-EAEAVREVYERAIANVPPIQEKRHWKRYIYLWIN 539
Query: 300 MELC--LGNIDP--CRKLYEKYLEWSPENCYAWSK----YTELE---KSLDETERA 344
L L DP R++Y+ LE P + ++K Y + E K+L RA
Sbjct: 540 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRA 595
Score = 196 (74.1 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 88/366 (24%), Positives = 156/366 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEG---WL 57
+D R ++R V + P V W Y R EE A AR+++ER + + D H ++
Sbjct: 359 VDRARTIYERFVLVHPDVKN-WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 417
Query: 58 SYIKFKLRYNEVQRARHIF----ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
++ KF+ E +R R I+ +R+ + L + N+ FE K G DR R + +
Sbjct: 418 AFAKFEENQKEFERVRVIYKYALDRISKQDAQEL--FKNYTIFEKKFG--DR-RGIEDII 472
Query: 114 VEI--FLADDHDEAE-QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
V F ++ +A + A+ + + + E + R +Y+ A+ +P + + +++
Sbjct: 473 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKR 532
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERV 226
++ Y E +E + R Y+ + P T W Y + E R N
Sbjct: 533 YIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLA 592
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R +I P + + ++ YI L E+ + +R R +Y + F P
Sbjct: 593 RRALGTSIGKCP---KNKLFKVYIEL--------ELQLREFDRCRKLYEK----FLEFGP 637
Query: 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETE 342
E + K+ E+E LG+ID R +YE + PE W Y + E +ETE
Sbjct: 638 --ENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPE--VLWKSYIDFEIEQEETE 693
Query: 343 RARAIF 348
R R ++
Sbjct: 694 RTRNLY 699
Score = 192 (72.6 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 78/328 (23%), Positives = 148/328 (45%)
Query: 21 QLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGWLSYIKFKLRYNEVQR 71
+L+ NY E+ G+ G I +E + P +++ W Y++ E +
Sbjct: 450 ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEA 509
Query: 72 ARHIFERLVQCHP----------YNLSAWINFADFE-MKMGEVDRARNVYECAVEIFLAD 120
R ++ER + P Y + WIN+A +E ++ + +R R VY+ ++E+
Sbjct: 510 VREVYERAIANVPPIQEKRHWKRY-IYLWINYALYEELEAKDPERTRQVYQASLELIPHK 568
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
A+ +++ +A+FE K AR ++ + PK + L++ ++ E Q
Sbjct: 569 KFTFAK-MWILYAQFE---IRQKNLSLARRALGTSIGKCPKNK---LFKVYIELELQL-- 619
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
RE + R YE + P N +W + LE +G+ +R R +YE AI+ P
Sbjct: 620 RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQ-PRL 672
Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM 300
+ LW +Y + E++ + ERTR++YR L R + +++ + +
Sbjct: 673 DMPEV------LWKSYIDF-EIEQEETERTRNLYRRLL-------QRTQHVKVWISFAQF 718
Query: 301 ELCLG---NIDPCRKLYEKYLEWSPENC 325
EL G ++ CR++YE+ + + NC
Sbjct: 719 ELSSGKEGSLTKCRQIYEEANK-TMRNC 745
Score = 187 (70.9 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 79/329 (24%), Positives = 140/329 (42%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ + +S WI +A +E + E+ RAR++YE A+++ D+
Sbjct: 226 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV----DYRN----IT 277
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190
+ K+ EM ++ + AR I+ A+ +P R + K+ E+ G+ G
Sbjct: 278 LWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNVAGARQVFER 335
Query: 191 KMRLQYEDGVRKNPMNYD------------------------TWFDYIRLEERVGNQERV 226
M Q E+ + +N++ W Y R EE+
Sbjct: 336 WMEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHA 395
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R+VYERA+ +E + ++Y + +A ++E + + ER R +Y+ +
Sbjct: 396 RKVYERAVEFF--GDE--HMDEHLY--VAFAKFEE-NQKEFERVRVIYK----YALDRIS 444
Query: 287 RMEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEKSL 338
+ + + +FK Y E G+ + R YE+ ++ +P N AW Y L +S
Sbjct: 445 KQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 504
Query: 339 DETERARAIFELAIAQ--PILDLPEFLWK 365
E E R ++E AIA PI + WK
Sbjct: 505 AEAEAVREVYERAIANVPPIQEKRH--WK 531
Score = 171 (65.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 78/343 (22%), Positives = 144/343 (41%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE+L + AR I+ER + D+ WL Y + +++ +V AR+I++R
Sbjct: 245 WIKYAQWEESLKEIQRARSIYERALD--VDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 302
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ P W + E +G V AR V+E +E EQ + ++ FE
Sbjct: 303 ITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWME------WQPEEQAWHSYINFE--- 353
Query: 140 CNCKETDRARCIY-KFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
KE DRAR IY +F L P + + K+ FE+++ A A K+ + +
Sbjct: 354 LRYKEVDRARTIYERFVLVH-PDVKN---WIKYARFEEKHA-----YFAHARKVYERAVE 404
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
M+ + + + EE ERVR +Y+ A+ + + + ++ Y +
Sbjct: 405 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGD 464
Query: 259 YKEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIEM-ELCLGNIDPC 310
+ ++ + + R Y + +F + +E + E+ E + N+ P
Sbjct: 465 RRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPP- 523
Query: 311 RKLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
+ EK W Y W Y E+ + ER R +++ ++
Sbjct: 524 --IQEKR-HWK-RYIYLWINYALYEELEAKDPERTRQVYQASL 562
Score = 160 (61.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 45/169 (26%), Positives = 82/169 (48%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + P W + +E LG++ AR I+E + MP+ W S
Sbjct: 623 DRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVL-WKS 681
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM---KMGEVDRARNVYECAVE 115
YI F++ E +R R+++ RL+Q ++ WI+FA FE+ K G + + R +YE A +
Sbjct: 682 YIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANK 740
Query: 116 IFL-ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163
++ +E L ++ FEE + +R + K +++ K R
Sbjct: 741 TMRNCEEKEERLMLLESWRSFEEEFGTASDKER---VDKLMPEKVKKRR 786
Score = 159 (61.0 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 44/149 (29%), Positives = 73/149 (48%)
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+++ D E + D K R +ED +RKN W Y + EE + +R R +YERA+
Sbjct: 211 QQKITDEEELNDYKLRK-RKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 269
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ Y R I LW+ YA E+ + R+++ + PR+ + +
Sbjct: 270 -------DVDY--RNITLWLKYA-EMEMKNRQVNHARNIWDRAI----TTLPRVNQ--FW 313
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPE 323
KY ME LGN+ R+++E+++EW PE
Sbjct: 314 YKYTYMEEMLGNVAGARQVFERWMEWQPE 342
Score = 143 (55.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 59/258 (22%), Positives = 109/258 (42%)
Query: 22 LWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSYIKFKLRYNEVQRARHI 75
LW NY EE + RQ+++ + +P + W+ Y +F++R + AR
Sbjct: 536 LWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRA 595
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
+ P N + + + E+++ E DR R +YE +E + ++ KF
Sbjct: 596 LGTSIGKCPKNKLFKV-YIELELQLREFDRCRKLYEKFLEF--------GPENCTSWIKF 646
Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195
E+ + DRAR IY+ A+ + E L++ ++ FE IE + R
Sbjct: 647 AELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEETERTRNL 698
Query: 196 YEDGVRKNPMNYDTWFDYIRLE---ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYL 252
Y +++ + W + + E + G+ + R++YE A + EEK +
Sbjct: 699 YRRLLQRT-QHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLES 757
Query: 253 WINYALYKEVD-AGDLER 269
W ++ +E A D ER
Sbjct: 758 WRSFE--EEFGTASDKER 773
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 177/349 (50%), Positives = 229/349 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR +T PRV+Q W Y MEE LGNVAGARQ+FERWM W P+ + W SYI
Sbjct: 131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+LRY EV+RAR I+ER V HP + WI +A FE K AR VYE AVE F D+
Sbjct: 191 FELRYKEVERARTIYERFVLVHPA-VKNWIKYARFEEKHAYFAHARKVYERAVEFF-GDE 248
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
H + E L+VAFAKFEE N KE +R R IYK+ALDRI K A++L++ + FEK++GDR
Sbjct: 249 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDR 304
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
GIED I K R QYE+ V+ NP NYD WFDY+RL E + VREVYERAIANVPP +
Sbjct: 305 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQ 364
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
EKR+W+RYIYLW+NYALY+E++A D ERTR VY+ +L + + +++ Y +
Sbjct: 365 EKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWLYYAQF 421
Query: 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
E+ N+ R+ + P+N + Y ELE L E +R R ++E
Sbjct: 422 EIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 469
Score = 408 (148.7 bits), Expect = 1.8e-37, P = 1.8e-37
Identities = 118/371 (31%), Positives = 186/371 (50%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + P +Q W++YI E V AR I+ER++ P + W+ Y +F+ +
Sbjct: 169 RQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEK 227
Query: 66 YNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
+ AR ++ER V+ + ++ FA FE E +R R +Y+ A++
Sbjct: 228 HAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRI---SK 284
Query: 123 DEAEQLFVAFAKFEE-MGCNCKETDRARCIYKFALDRIPKGRAE--DLYRKFLAFEKQYG 179
EA++LF + FE+ G D +F + K D + +L +
Sbjct: 285 QEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDA 344
Query: 180 D----REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERAI 234
+ RE E AIA +Q + ++ Y W +Y EE + ER R+VY+ ++
Sbjct: 345 EADTVREVYERAIANVPPIQEKRHWKR--YIY-LWVNYALYEELEAKDPERTRQVYQASL 401
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+P K++ + +W+ YA + E+ +L R T S + + ++F
Sbjct: 402 ELIP---HKKF--TFAKMWLYYAQF-EIRQKNLPFARRALGT------SIG-KCPKNKLF 448
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354
K YIE+EL L D CRKLYEK+LE+ PENC +W K+ ELE L + ERARAI+ELAI+Q
Sbjct: 449 KGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQ 508
Query: 355 PILDLPEFLWK 365
P LD+PE LWK
Sbjct: 509 PRLDMPEVLWK 519
Score = 201 (75.8 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 87/356 (24%), Positives = 151/356 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I R+ ++R + + R LW Y ME V AR I++R + +P ++ W Y
Sbjct: 97 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 156
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ V AR +FER ++ P AW ++ +FE++ EV+RAR +YE V +
Sbjct: 157 YMEEMLGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERARTIYERFVLV---- 211
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI-PKGRAEDLYRKFLAFEKQYG 179
H + ++ +A+FEE AR +Y+ A++ + E LY F FE+
Sbjct: 212 -HPAVKN-WIKYARFEEKHAYFAH---ARKVYERAVEFFGDEHMDEHLYVAFAKFEENQK 266
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+ E + + K L D + K + + +Y E++ G++ + ++
Sbjct: 267 EFERVR--VIYKYAL---DRISKQEAQ-ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYE 320
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E K Y W +Y E DA + + R+VY + +R ++
Sbjct: 321 EEVKANPHNYD-AWFDYLRLVESDA-EADTVREVYERAIANVPPIQEKRHWKRYIYLWVN 378
Query: 300 MELC--LGNIDP--CRKLYEKYLEWSPENCYAWSK----YTELE---KSLDETERA 344
L L DP R++Y+ LE P + ++K Y + E K+L RA
Sbjct: 379 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRA 434
Score = 195 (73.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 87/366 (23%), Positives = 156/366 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEG---WL 57
++ R ++R V + P V W Y R EE A AR+++ER + + D H ++
Sbjct: 198 VERARTIYERFVLVHPAVKN-WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 256
Query: 58 SYIKFKLRYNEVQRARHIF----ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
++ KF+ E +R R I+ +R+ + L + N+ FE K G DR R + +
Sbjct: 257 AFAKFEENQKEFERVRVIYKYALDRISKQEAQEL--FKNYTIFEKKFG--DR-RGIEDII 311
Query: 114 VEI--FLADDHDEAE-QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
V F ++ +A + A+ + + + E D R +Y+ A+ +P + + +++
Sbjct: 312 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKR 371
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERV 226
++ Y E +E + R Y+ + P T W Y + E R N
Sbjct: 372 YIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFA 431
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R +I P + + ++ YI L E+ + +R R +Y + F P
Sbjct: 432 RRALGTSIGKCP---KNKLFKGYIEL--------ELQLREFDRCRKLYEK----FLEFGP 476
Query: 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETE 342
E + K+ E+E LG+I+ R +YE + PE W Y + E +ETE
Sbjct: 477 --ENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPE--VLWKSYIDFEIEQEETE 532
Query: 343 RARAIF 348
R R ++
Sbjct: 533 RTRNLY 538
Score = 189 (71.6 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 81/341 (23%), Positives = 151/341 (44%)
Query: 8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGWLS 58
A DR+ +L+ NY E+ G+ G I +E + P +++ W
Sbjct: 278 ALDRIS--KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFD 335
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHP----------YNLSAWINFADFE-MKMGEVDRAR 107
Y++ E R ++ER + P Y + W+N+A +E ++ + +R R
Sbjct: 336 YLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRY-IYLWVNYALYEELEAKDPERTR 394
Query: 108 NVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL 167
VY+ ++E+ A+ +++ +A+FE K AR ++ + PK + L
Sbjct: 395 QVYQASLELIPHKKFTFAK-MWLYYAQFE---IRQKNLPFARRALGTSIGKCPKNK---L 447
Query: 168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR 227
++ ++ E Q RE + R YE + P N +W + LE +G+ ER R
Sbjct: 448 FKGYIELELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERAR 499
Query: 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
+YE AI+ P + LW +Y + E++ + ERTR++YR L R
Sbjct: 500 AIYELAISQ-PRLDMPEV------LWKSYIDF-EIEQEETERTRNLYRQLL-------QR 544
Query: 288 MEERRIFKKYIEMELCLG---NIDPCRKLYEKYLEWSPENC 325
+ +++ + + EL G ++ CR++YE+ + + NC
Sbjct: 545 TQHVKVWISFAQFELSSGKEGSVAKCRQIYEEANK-TMRNC 584
Score = 187 (70.9 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 79/329 (24%), Positives = 140/329 (42%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ + +S WI +A +E + E+ RAR++YE A+++ D+
Sbjct: 65 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV----DYRN----IT 116
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190
+ K+ EM ++ + AR I+ A+ +P R + K+ E+ G+ G
Sbjct: 117 LWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNVAGARQVFER 174
Query: 191 KMRLQYEDGVRKNPMNYD------------------------TWFDYIRLEERVGNQERV 226
M Q E+ + +N++ W Y R EE+
Sbjct: 175 WMEWQPEEQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHA 234
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R+VYERA+ +E + ++Y + +A ++E + + ER R +Y+ +
Sbjct: 235 RKVYERAVEFF--GDE--HMDEHLY--VAFAKFEE-NQKEFERVRVIYK----YALDRIS 283
Query: 287 RMEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEKSL 338
+ E + +FK Y E G+ + R YE+ ++ +P N AW Y L +S
Sbjct: 284 KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 343
Query: 339 DETERARAIFELAIAQ--PILDLPEFLWK 365
E + R ++E AIA PI + WK
Sbjct: 344 AEADTVREVYERAIANVPPIQEKRH--WK 370
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 79/343 (23%), Positives = 143/343 (41%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE+L + AR I+ER + D+ WL Y + +++ +V AR+I++R
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALD--VDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 141
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ P W + E +G V AR V+E +E EQ + ++ FE
Sbjct: 142 ITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWME------WQPEEQAWHSYINFE--- 192
Query: 140 CNCKETDRARCIY-KFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
KE +RAR IY +F L P A + K+ FE+++ A A K+ + +
Sbjct: 193 LRYKEVERARTIYERFVLVH-P---AVKNWIKYARFEEKHA-----YFAHARKVYERAVE 243
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
M+ + + + EE ERVR +Y+ A+ + E + ++ Y +
Sbjct: 244 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGD 303
Query: 259 YKEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIEM-ELCLGNIDPC 310
+ ++ + + R Y + +F + +E E+ E + N+ P
Sbjct: 304 RRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPP- 362
Query: 311 RKLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
+ EK W Y W Y E+ + ER R +++ ++
Sbjct: 363 --IQEKR-HWK-RYIYLWVNYALYEELEAKDPERTRQVYQASL 401
Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 44/149 (29%), Positives = 73/149 (48%)
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+++ D E + D K R +ED +RKN W Y + EE + +R R +YERA+
Sbjct: 50 QQKITDEEELNDYKLRK-RKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ Y R I LW+ YA E+ + R+++ + PR+ + +
Sbjct: 109 -------DVDY--RNITLWLKYA-EMEMKNRQVNHARNIWDRAI----TTLPRVNQ--FW 152
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPE 323
KY ME LGN+ R+++E+++EW PE
Sbjct: 153 YKYTYMEEMLGNVAGARQVFERWMEWQPE 181
Score = 157 (60.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + P W + +E LG++ AR I+E + MP+ W S
Sbjct: 462 DRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKS 520
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM---KMGEVDRARNVYECAVE 115
YI F++ E +R R+++ +L+Q ++ WI+FA FE+ K G V + R +YE A +
Sbjct: 521 YIDFEIEQEETERTRNLYRQLLQ-RTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEANK 579
Query: 116 IFL-ADDHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGR 163
++ +E L ++ FE E G +D+ R + K +++ K R
Sbjct: 580 TMRNCEEKEERLMLLESWRSFEDEFGT---VSDKER-VDKLMPEKVKKRR 625
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 55/244 (22%), Positives = 102/244 (41%)
Query: 22 LWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSYIKFKLRYNEVQRARHI 75
LW NY EE + RQ+++ + +P + WL Y +F++R + AR
Sbjct: 375 LWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRA 434
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
+ P N + + + E+++ E DR R +YE +E + ++ KF
Sbjct: 435 LGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEF--------GPENCTSWIKF 485
Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195
E+ + +RAR IY+ A+ + E L++ ++ FE IE + R
Sbjct: 486 AELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEETERTRNL 537
Query: 196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERV---REVYERAIANVPPAEEKRYWQRYIYL 252
Y +++ + W + + E G + V R++YE A + EEK +
Sbjct: 538 YRQLLQRT-QHVKVWISFAQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLES 596
Query: 253 WINY 256
W ++
Sbjct: 597 WRSF 600
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 177/349 (50%), Positives = 229/349 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR +T PRV+Q W Y MEE LGNVAGARQ+FERWM W P+ + W SYI
Sbjct: 131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+LRY EV+RAR I+ER V HP + WI +A FE K AR VYE AVE F D+
Sbjct: 191 FELRYKEVERARTIYERFVLVHPA-VKNWIKYARFEEKHAYFAHARKVYERAVEFF-GDE 248
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
H + E L+VAFAKFEE N KE +R R IYK+ALDRI K A++L++ + FEK++GDR
Sbjct: 249 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDR 304
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
GIED I K R QYE+ V+ NP NYD WFDY+RL E + VREVYERAIANVPP +
Sbjct: 305 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQ 364
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
EKR+W+RYIYLW+NYALY+E++A D ERTR VY+ +L + + +++ Y +
Sbjct: 365 EKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWLYYAQF 421
Query: 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
E+ N+ R+ + P+N + Y ELE L E +R R ++E
Sbjct: 422 EIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 469
Score = 408 (148.7 bits), Expect = 1.8e-37, P = 1.8e-37
Identities = 118/371 (31%), Positives = 186/371 (50%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + P +Q W++YI E V AR I+ER++ P + W+ Y +F+ +
Sbjct: 169 RQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEK 227
Query: 66 YNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
+ AR ++ER V+ + ++ FA FE E +R R +Y+ A++
Sbjct: 228 HAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRI---SK 284
Query: 123 DEAEQLFVAFAKFEE-MGCNCKETDRARCIYKFALDRIPKGRAE--DLYRKFLAFEKQYG 179
EA++LF + FE+ G D +F + K D + +L +
Sbjct: 285 QEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDA 344
Query: 180 D----REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERAI 234
+ RE E AIA +Q + ++ Y W +Y EE + ER R+VY+ ++
Sbjct: 345 EADTVREVYERAIANVPPIQEKRHWKR--YIY-LWVNYALYEELEAKDPERTRQVYQASL 401
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+P K++ + +W+ YA + E+ +L R T S + + ++F
Sbjct: 402 ELIP---HKKF--TFAKMWLYYAQF-EIRQKNLPFARRALGT------SIG-KCPKNKLF 448
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354
K YIE+EL L D CRKLYEK+LE+ PENC +W K+ ELE L + ERARAI+ELAI+Q
Sbjct: 449 KGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQ 508
Query: 355 PILDLPEFLWK 365
P LD+PE LWK
Sbjct: 509 PRLDMPEVLWK 519
Score = 201 (75.8 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 87/356 (24%), Positives = 151/356 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I R+ ++R + + R LW Y ME V AR I++R + +P ++ W Y
Sbjct: 97 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 156
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ V AR +FER ++ P AW ++ +FE++ EV+RAR +YE V +
Sbjct: 157 YMEEMLGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERARTIYERFVLV---- 211
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI-PKGRAEDLYRKFLAFEKQYG 179
H + ++ +A+FEE AR +Y+ A++ + E LY F FE+
Sbjct: 212 -HPAVKN-WIKYARFEEKHAYFAH---ARKVYERAVEFFGDEHMDEHLYVAFAKFEENQK 266
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+ E + + K L D + K + + +Y E++ G++ + ++
Sbjct: 267 EFERVR--VIYKYAL---DRISKQEAQ-ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYE 320
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E K Y W +Y E DA + + R+VY + +R ++
Sbjct: 321 EEVKANPHNYD-AWFDYLRLVESDA-EADTVREVYERAIANVPPIQEKRHWKRYIYLWVN 378
Query: 300 MELC--LGNIDP--CRKLYEKYLEWSPENCYAWSK----YTELE---KSLDETERA 344
L L DP R++Y+ LE P + ++K Y + E K+L RA
Sbjct: 379 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRA 434
Score = 195 (73.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 87/366 (23%), Positives = 156/366 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEG---WL 57
++ R ++R V + P V W Y R EE A AR+++ER + + D H ++
Sbjct: 198 VERARTIYERFVLVHPAVKN-WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 256
Query: 58 SYIKFKLRYNEVQRARHIF----ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
++ KF+ E +R R I+ +R+ + L + N+ FE K G DR R + +
Sbjct: 257 AFAKFEENQKEFERVRVIYKYALDRISKQEAQEL--FKNYTIFEKKFG--DR-RGIEDII 311
Query: 114 VEI--FLADDHDEAE-QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
V F ++ +A + A+ + + + E D R +Y+ A+ +P + + +++
Sbjct: 312 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKR 371
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERV 226
++ Y E +E + R Y+ + P T W Y + E R N
Sbjct: 372 YIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFA 431
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R +I P + + ++ YI L E+ + +R R +Y + F P
Sbjct: 432 RRALGTSIGKCP---KNKLFKGYIEL--------ELQLREFDRCRKLYEK----FLEFGP 476
Query: 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETE 342
E + K+ E+E LG+I+ R +YE + PE W Y + E +ETE
Sbjct: 477 --ENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPE--VLWKSYIDFEIEQEETE 532
Query: 343 RARAIF 348
R R ++
Sbjct: 533 RTRNLY 538
Score = 189 (71.6 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 81/341 (23%), Positives = 151/341 (44%)
Query: 8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGWLS 58
A DR+ +L+ NY E+ G+ G I +E + P +++ W
Sbjct: 278 ALDRIS--KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFD 335
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHP----------YNLSAWINFADFE-MKMGEVDRAR 107
Y++ E R ++ER + P Y + W+N+A +E ++ + +R R
Sbjct: 336 YLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRY-IYLWVNYALYEELEAKDPERTR 394
Query: 108 NVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL 167
VY+ ++E+ A+ +++ +A+FE K AR ++ + PK + L
Sbjct: 395 QVYQASLELIPHKKFTFAK-MWLYYAQFE---IRQKNLPFARRALGTSIGKCPKNK---L 447
Query: 168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR 227
++ ++ E Q RE + R YE + P N +W + LE +G+ ER R
Sbjct: 448 FKGYIELELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERAR 499
Query: 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
+YE AI+ P + LW +Y + E++ + ERTR++YR L R
Sbjct: 500 AIYELAISQ-PRLDMPEV------LWKSYIDF-EIEQEETERTRNLYRQLL-------QR 544
Query: 288 MEERRIFKKYIEMELCLG---NIDPCRKLYEKYLEWSPENC 325
+ +++ + + EL G ++ CR++YE+ + + NC
Sbjct: 545 TQHVKVWISFAQFELSSGKEGSVAKCRQIYEEANK-TMRNC 584
Score = 187 (70.9 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 79/329 (24%), Positives = 140/329 (42%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ + +S WI +A +E + E+ RAR++YE A+++ D+
Sbjct: 65 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV----DYRN----IT 116
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190
+ K+ EM ++ + AR I+ A+ +P R + K+ E+ G+ G
Sbjct: 117 LWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNVAGARQVFER 174
Query: 191 KMRLQYEDGVRKNPMNYD------------------------TWFDYIRLEERVGNQERV 226
M Q E+ + +N++ W Y R EE+
Sbjct: 175 WMEWQPEEQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHA 234
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R+VYERA+ +E + ++Y + +A ++E + + ER R +Y+ +
Sbjct: 235 RKVYERAVEFF--GDE--HMDEHLY--VAFAKFEE-NQKEFERVRVIYK----YALDRIS 283
Query: 287 RMEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEKSL 338
+ E + +FK Y E G+ + R YE+ ++ +P N AW Y L +S
Sbjct: 284 KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 343
Query: 339 DETERARAIFELAIAQ--PILDLPEFLWK 365
E + R ++E AIA PI + WK
Sbjct: 344 AEADTVREVYERAIANVPPIQEKRH--WK 370
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 79/343 (23%), Positives = 143/343 (41%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE+L + AR I+ER + D+ WL Y + +++ +V AR+I++R
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALD--VDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 141
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ P W + E +G V AR V+E +E EQ + ++ FE
Sbjct: 142 ITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWME------WQPEEQAWHSYINFE--- 192
Query: 140 CNCKETDRARCIY-KFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
KE +RAR IY +F L P A + K+ FE+++ A A K+ + +
Sbjct: 193 LRYKEVERARTIYERFVLVH-P---AVKNWIKYARFEEKHA-----YFAHARKVYERAVE 243
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
M+ + + + EE ERVR +Y+ A+ + E + ++ Y +
Sbjct: 244 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGD 303
Query: 259 YKEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIEM-ELCLGNIDPC 310
+ ++ + + R Y + +F + +E E+ E + N+ P
Sbjct: 304 RRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPP- 362
Query: 311 RKLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
+ EK W Y W Y E+ + ER R +++ ++
Sbjct: 363 --IQEKR-HWK-RYIYLWVNYALYEELEAKDPERTRQVYQASL 401
Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 44/149 (29%), Positives = 73/149 (48%)
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+++ D E + D K R +ED +RKN W Y + EE + +R R +YERA+
Sbjct: 50 QQKITDEEELNDYKLRK-RKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ Y R I LW+ YA E+ + R+++ + PR+ + +
Sbjct: 109 -------DVDY--RNITLWLKYA-EMEMKNRQVNHARNIWDRAI----TTLPRVNQ--FW 152
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPE 323
KY ME LGN+ R+++E+++EW PE
Sbjct: 153 YKYTYMEEMLGNVAGARQVFERWMEWQPE 181
Score = 157 (60.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + P W + +E LG++ AR I+E + MP+ W S
Sbjct: 462 DRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKS 520
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM---KMGEVDRARNVYECAVE 115
YI F++ E +R R+++ +L+Q ++ WI+FA FE+ K G V + R +YE A +
Sbjct: 521 YIDFEIEQEETERTRNLYRQLLQ-RTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEANK 579
Query: 116 IFL-ADDHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGR 163
++ +E L ++ FE E G +D+ R + K +++ K R
Sbjct: 580 TMRNCEEKEERLMLLESWRSFEDEFGT---VSDKER-VDKLMPEKVKKRR 625
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 55/244 (22%), Positives = 102/244 (41%)
Query: 22 LWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSYIKFKLRYNEVQRARHI 75
LW NY EE + RQ+++ + +P + WL Y +F++R + AR
Sbjct: 375 LWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRA 434
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
+ P N + + + E+++ E DR R +YE +E + ++ KF
Sbjct: 435 LGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEF--------GPENCTSWIKF 485
Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195
E+ + +RAR IY+ A+ + E L++ ++ FE IE + R
Sbjct: 486 AELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEETERTRNL 537
Query: 196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERV---REVYERAIANVPPAEEKRYWQRYIYL 252
Y +++ + W + + E G + V R++YE A + EEK +
Sbjct: 538 YRQLLQRT-QHVKVWISFAQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLES 596
Query: 253 WINY 256
W ++
Sbjct: 597 WRSF 600
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 180/353 (50%), Positives = 231/353 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR +T PRV+Q W Y MEE LGN+AGARQ+FERWM W P+ + W SYI
Sbjct: 215 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWRPEEQAWHSYIN 274
Query: 62 FKLRYNEVQRARHIFER----LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF 117
F+LRY EV RAR I+ER LV HP ++ WI +A FE K G AR VYE AVE F
Sbjct: 275 FELRYKEVDRARTIYERYIHSLVLVHP-DVKNWIKYARFEEKHGYFAHARKVYERAVEFF 333
Query: 118 LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ 177
D+H + E L+VAFAKFEE N KE +R R IYK+ALDRI K A++L++ + FEK+
Sbjct: 334 -GDEHMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKK 388
Query: 178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANV 237
+GDR GIED I K R QYE+ V+ NP NYD WFDY+RL E E VREVYERAIANV
Sbjct: 389 FGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANV 448
Query: 238 PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKK 296
PP +EKR+W+RYIYLWINYALY+E++A D ERTR VY+ +L + + +++
Sbjct: 449 PPVQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWLL 505
Query: 297 YIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
Y + E+ N+ R+ + P+N + Y ELE L E +R R ++E
Sbjct: 506 YAQFEIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 557
Score = 416 (151.5 bits), Expect = 4.0e-38, P = 4.0e-38
Identities = 120/375 (32%), Positives = 189/375 (50%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWM----PDHEGWLSYIK 61
R ++R + P +Q W++YI E V AR I+ER++H + PD + W+ Y +
Sbjct: 253 RQVFERWMEWRPE-EQAWHSYINFELRYKEVDRARTIYERYIHSLVLVHPDVKNWIKYAR 311
Query: 62 FKLRYNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL 118
F+ ++ AR ++ER V+ + ++ FA FE E +R R +Y+ A++
Sbjct: 312 FEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRI- 370
Query: 119 ADDHDEAEQLFVAFAKFEE-MGCNCKETDRARCIYKFALDRIPKGRAE--DLYRKFLAFE 175
EA++LF + FE+ G D +F + K D + +L
Sbjct: 371 --SKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 428
Query: 176 KQYGD----REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVY 230
+ + RE E AIA +Q + ++ Y W +Y EE + ER R+VY
Sbjct: 429 ESDAEAETVREVYERAIANVPPVQEKRHWKR--YIY-LWINYALYEELEAKDPERTRQVY 485
Query: 231 ERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE 290
+ ++ +P K++ + +W+ YA + E+ +L R T S + +
Sbjct: 486 QASLELIP---HKKF--TFAKMWLLYAQF-EIRQKNLPFARRALGT------SIG-KCPK 532
Query: 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFEL 350
++FK YIE+EL L D CRKLYEK+LE+ PENC +W K+ ELE L + ERARAI+EL
Sbjct: 533 NKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYEL 592
Query: 351 AIAQPILDLPEFLWK 365
AI+QP LD+PE LWK
Sbjct: 593 AISQPRLDMPEVLWK 607
Score = 221 (82.9 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 90/360 (25%), Positives = 160/360 (44%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I R+ ++R + + R LW Y ME V AR I++R + +P ++ W Y
Sbjct: 181 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 240
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ + AR +FER ++ P AW ++ +FE++ EVDRAR +YE + +
Sbjct: 241 YMEEMLGNIAGARQVFERWMEWRPEE-QAWHSYINFELRYKEVDRARTIYERYIHSLVLV 299
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI-PKGRAEDLYRKFLAFEKQYG 179
H + + ++ +A+FEE AR +Y+ A++ + E LY F FE+
Sbjct: 300 -HPDVKN-WIKYARFEEKHGYFAH---ARKVYERAVEFFGDEHMDEHLYVAFAKFEENQK 354
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+ E + + K L D + K + + +Y E++ G++ + ++
Sbjct: 355 EFERVR--VIYKYAL---DRISKQEAQ-ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYE 408
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E K Y W +Y E DA + E R+VY + P ++E+R +K+YI
Sbjct: 409 EEVKANPHNYD-AWFDYLRLVESDA-EAETVREVYERAI----ANVPPVQEKRHWKRYIY 462
Query: 300 M--------ELCLGNIDPCRKLYEKYLEWSPENCYAWSK----YTELE---KSLDETERA 344
+ EL + + R++Y+ LE P + ++K Y + E K+L RA
Sbjct: 463 LWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRA 522
Score = 192 (72.6 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 82/341 (24%), Positives = 152/341 (44%)
Query: 8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGWLS 58
A DR+ +L+ NY E+ G+ G I +E + P +++ W
Sbjct: 366 ALDRIS--KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFD 423
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHP----------YNLSAWINFADFE-MKMGEVDRAR 107
Y++ E + R ++ER + P Y + WIN+A +E ++ + +R R
Sbjct: 424 YLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRY-IYLWINYALYEELEAKDPERTR 482
Query: 108 NVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL 167
VY+ ++E+ A+ +++ +A+FE K AR ++ + PK + L
Sbjct: 483 QVYQASLELIPHKKFTFAK-MWLLYAQFE---IRQKNLPFARRALGTSIGKCPKNK---L 535
Query: 168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR 227
++ ++ E Q RE + R YE + P N +W + LE +G+ ER R
Sbjct: 536 FKGYIELELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERAR 587
Query: 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
+YE AI+ P + LW +Y + E++ + ERTR++YR L R
Sbjct: 588 AIYELAISQ-PRLDMPEV------LWKSYIDF-EIEQEETERTRNLYRRLL-------QR 632
Query: 288 MEERRIFKKYIEMELCLG---NIDPCRKLYEKYLEWSPENC 325
+ +++ + + EL G ++ CR++YE+ + + NC
Sbjct: 633 TQHVKVWISFAQFELSSGKEGSLAKCRQIYEEANK-TMRNC 672
Score = 186 (70.5 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 88/370 (23%), Positives = 158/370 (42%)
Query: 2 IDHGRNAWDR----VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEG- 55
+D R ++R +V + P V W Y R EE G A AR+++ER + + D H
Sbjct: 282 VDRARTIYERYIHSLVLVHPDVKN-WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDE 340
Query: 56 --WLSYIKFKLRYNEVQRARHIF----ERLVQCHPYNLSAWINFADFEMKMGEVDRARNV 109
++++ KF+ E +R R I+ +R+ + L + N+ FE K G DR R +
Sbjct: 341 HLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQEL--FKNYTIFEKKFG--DR-RGI 395
Query: 110 YECAVEI--FLADDHDEAE-QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED 166
+ V F ++ +A + A+ + + + E + R +Y+ A+ +P + +
Sbjct: 396 EDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKR 455
Query: 167 LYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGN 222
+++++ Y E +E + R Y+ + P T W Y + E R N
Sbjct: 456 HWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKN 515
Query: 223 QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF 282
R +I P + + ++ YI L E+ + +R R +Y +
Sbjct: 516 LPFARRALGTSIGKCP---KNKLFKGYIEL--------ELQLREFDRCRKLYEK----FL 560
Query: 283 SFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSL 338
F P E + K+ E+E LG+I+ R +YE + PE W Y + E
Sbjct: 561 EFGP--ENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPE--VLWKSYIDFEIEQ 616
Query: 339 DETERARAIF 348
+ETER R ++
Sbjct: 617 EETERTRNLY 626
Score = 174 (66.3 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 77/343 (22%), Positives = 145/343 (42%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE+L + AR I+ER + D+ WL Y + +++ +V AR+I++R
Sbjct: 168 WIKYAQWEESLKEIQRARSIYERALD--VDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 225
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ P W + E +G + AR V+E +E E EQ + ++ FE
Sbjct: 226 ITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEW-----RPE-EQAWHSYINFE--- 276
Query: 140 CNCKETDRARCIYKFALDRIPKGRAE-DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
KE DRAR IY+ + + + + K+ FE+++G A A K+ + +
Sbjct: 277 LRYKEVDRARTIYERYIHSLVLVHPDVKNWIKYARFEEKHG-----YFAHARKVYERAVE 331
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
M+ + + + EE ERVR +Y+ A+ + E + ++ Y +
Sbjct: 332 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGD 391
Query: 259 YKEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIEM-ELCLGNIDPC 310
+ ++ + + R Y + +F + +E + E+ E + N+ P
Sbjct: 392 RRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPV 451
Query: 311 RKLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
+ EK W Y W Y E+ + ER R +++ ++
Sbjct: 452 Q---EKR-HWK-RYIYLWINYALYEELEAKDPERTRQVYQASL 489
Score = 163 (62.4 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 52/185 (28%), Positives = 86/185 (46%)
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+++ D E + D K R +ED +RKN W Y + EE + +R R +YERA+
Sbjct: 134 QQKITDEEELNDYKLRK-RKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 192
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ Y R I LW+ YA E+ + R+++ + PR+ + +
Sbjct: 193 -------DVDY--RNITLWLKYA-EMEMKNRQVNHARNIWDRAI----TTLPRVNQ--FW 236
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPEN--CYAWSKYTELEKSLDE--TERARAIFEL 350
KY ME LGNI R+++E+++EW PE +++ + K +D T R I L
Sbjct: 237 YKYTYMEEMLGNIAGARQVFERWMEWRPEEQAWHSYINFELRYKEVDRARTIYERYIHSL 296
Query: 351 AIAQP 355
+ P
Sbjct: 297 VLVHP 301
Score = 159 (61.0 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + P W + +E LG++ AR I+E + MP+ W S
Sbjct: 550 DRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKS 608
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM---KMGEVDRARNVYECAVE 115
YI F++ E +R R+++ RL+Q ++ WI+FA FE+ K G + + R +YE A +
Sbjct: 609 YIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFAQFELSSGKEGSLAKCRQIYEEANK 667
Query: 116 IFL-ADDHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGR 163
++ +E L ++ FE E G +D+ R + K +++ K R
Sbjct: 668 TMRNCEEKEERLMLLESWRNFEDEFGT---ASDKER-VDKLMPEKVKKRR 713
Score = 159 (61.0 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 76/319 (23%), Positives = 137/319 (42%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ + +S WI +A +E + E+ RAR++YE A+++ D+
Sbjct: 149 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV----DYRN----IT 200
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190
+ K+ EM ++ + AR I+ A+ +P R + K+ E+ G+ G
Sbjct: 201 LWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNIAGARQVFER 258
Query: 191 KMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA---------- 240
M + E+ + +N++ +R +E V + E Y ++ V P
Sbjct: 259 WMEWRPEEQAWHSYINFE-----LRYKE-VDRARTIYERYIHSLVLVHPDVKNWIKYARF 312
Query: 241 EEKR-YWQ--RYIY---------------LWINYALYKEVDAGDLERTRDVYRTLFIFYF 282
EEK Y+ R +Y L++ +A ++E + + ER R +Y+ +
Sbjct: 313 EEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEE-NQKEFERVRVIYK----YAL 367
Query: 283 SFSPRMEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTEL 334
+ E + +FK Y E G+ + R YE+ ++ +P N AW Y L
Sbjct: 368 DRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRL 427
Query: 335 EKSLDETERARAIFELAIA 353
+S E E R ++E AIA
Sbjct: 428 VESDAEAETVREVYERAIA 446
Score = 146 (56.5 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 55/244 (22%), Positives = 103/244 (42%)
Query: 22 LWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSYIKFKLRYNEVQRARHI 75
LW NY EE + RQ+++ + +P + WL Y +F++R + AR
Sbjct: 463 LWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRA 522
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
+ P N + + + E+++ E DR R +YE +E + ++ KF
Sbjct: 523 LGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEF--------GPENCTSWIKF 573
Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195
E+ + +RAR IY+ A+ + E L++ ++ FE IE + R
Sbjct: 574 AELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEETERTRNL 625
Query: 196 YEDGVRKNPMNYDTWFDYIRLE---ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYL 252
Y +++ + W + + E + G+ + R++YE A + EEK +
Sbjct: 626 YRRLLQRT-QHVKVWISFAQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLES 684
Query: 253 WINY 256
W N+
Sbjct: 685 WRNF 688
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 172/352 (48%), Positives = 229/352 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR VT+ PRV+Q W Y MEE L NVAGARQ+FERWM W P+ + W +Y+
Sbjct: 126 VNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVN 185
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+LRY E+ RAR I+ER V HP ++ WI FA FE G + +R V+E AVE F DD
Sbjct: 186 FELRYKEIDRAREIYERFVYVHP-DVKNWIKFARFEESHGFIHGSRRVFERAVEFF-GDD 243
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
+ E E+LF+AFA+FEE KE DRAR IYK+ALD +PK R ++L++ + EK+YGDR
Sbjct: 244 YIE-ERLFIAFARFEE---GQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDR 299
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
GIED I K + QYE V NP NYD WFDY+RL E G+++++RE YERAI+NVPPA
Sbjct: 300 AGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPAN 359
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSPRMEERRIFKKY 297
EK +W+RYIYLWINYALY+E++A D ERTR +Y+T F+FS +++ Y
Sbjct: 360 EKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFS------KLWLLY 413
Query: 298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
+ E+ + RK + P + + Y +LE L E ER R ++E
Sbjct: 414 AQFEIRCKELQRARKALGLAIGMCPRD-KLFRGYIDLEIQLREFERCRMLYE 464
Score = 429 (156.1 bits), Expect = 9.2e-40, P = 9.2e-40
Identities = 114/369 (30%), Positives = 188/369 (50%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + P +Q W Y+ E + AR+I+ER+++ PD + W+ + +F+
Sbjct: 164 RQVFERWMEWQPE-EQAWQTYVNFELRYKEIDRAREIYERFVYVHPDVKNWIKFARFEES 222
Query: 66 YNEVQRARHIFERLVQCH--PY-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
+ + +R +FER V+ Y +I FA FE E DRAR +Y+ A++
Sbjct: 223 HGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYALDHL---PK 279
Query: 123 DEAEQLFVAFAKFEEM-G--CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179
D ++LF A+ K E+ G ++ ++ Y++ + D + +L + G
Sbjct: 280 DRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEG 339
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMN-YD-TWFDYIRLEE-RVGNQERVREVYERAIAN 236
DR+ I + + KN Y W +Y EE + ER R++Y+ +
Sbjct: 340 DRDQIRETYERAIS-NVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLEL 398
Query: 237 VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKK 296
+P K++ + LW+ YA + E+ +L+R R + L + PR ++F+
Sbjct: 399 IP---HKQF--TFSKLWLLYAQF-EIRCKELQRAR---KALGLA-IGMCPR---DKLFRG 445
Query: 297 YIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356
YI++E+ L + CR LYEK+LE+ PENC W K+ ELE L +T+RARAIFELA+ QP
Sbjct: 446 YIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPR 505
Query: 357 LDLPEFLWK 365
LD+PE LWK
Sbjct: 506 LDMPELLWK 514
Score = 220 (82.5 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 91/361 (25%), Positives = 156/361 (43%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I R+ W+R + R LW Y ME V AR +++R + MP ++ W Y
Sbjct: 92 IQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYT 151
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ V AR +FER ++ P AW + +FE++ E+DRAR +YE V +
Sbjct: 152 YMEEMLENVAGARQVFERWMEWQPEE-QAWQTYVNFELRYKEIDRAREIYERFVYV---- 206
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK-QYG 179
H + + ++ FA+FEE + +R +++ A++ E+ R F+AF + + G
Sbjct: 207 -HPDVKN-WIKFARFEE---SHGFIHGSRRVFERAVEFFGDDYIEE--RLFIAFARFEEG 259
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+E I K L D + K+ + + Y + E++ G++ + +V
Sbjct: 260 QKEHDRARIIYKYAL---DHLPKD-RTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYE 315
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E Y W +Y E + GD ++ R+ Y + + RR +I
Sbjct: 316 QEVAANPTNYD-AWFDYLRLIEAE-GDRDQIRETYERAISNVPPANEKNFWRRYIYLWIN 373
Query: 300 M----ELCLGNIDPCRKLYEKYLEWSPENCYAWSK----YTELEKSLDETERARAIFELA 351
EL + + R++Y+ LE P + +SK Y + E E +RAR LA
Sbjct: 374 YALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLA 433
Query: 352 I 352
I
Sbjct: 434 I 434
Score = 198 (74.8 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 88/366 (24%), Positives = 155/366 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWL 57
ID R ++R V + P V W + R EE+ G + G+R++FER + + D ++
Sbjct: 193 IDRAREIYERFVYVHPDVKN-WIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFI 251
Query: 58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI--NFADFEMKMGEVDRARNVY----E 111
++ +F+ E RAR I++ + P + + + + E K G+ +V +
Sbjct: 252 AFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRK 311
Query: 112 CAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF 171
E +A + + F E G + D+ R Y+ A+ +P ++ +R++
Sbjct: 312 YQYEQEVAANPTNYDAWFDYLRLIEAEG----DRDQIRETYERAISNVPPANEKNFWRRY 367
Query: 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERVR 227
+ Y E +E A + R Y+ + P T W Y + E R +R R
Sbjct: 368 IYLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRAR 427
Query: 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
+ AI P + ++ YI L E+ + ER R +Y + F P
Sbjct: 428 KALGLAIGMCP---RDKLFRGYIDL--------EIQLREFERCRMLYEK----FLEFGP- 471
Query: 288 MEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETER 343
E + K+ E+E LG+ D R ++E ++ PE W Y + E +L ETE
Sbjct: 472 -ENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPE--LLWKAYIDFEVALGETEL 528
Query: 344 ARAIFE 349
AR ++E
Sbjct: 529 ARQLYE 534
Score = 185 (70.2 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 66/279 (23%), Positives = 122/279 (43%)
Query: 18 RVDQLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGWLSYIKFKLRYNE 68
R +L+ Y + E+ G+ AG + +E+ + P +++ W Y++ +
Sbjct: 281 RTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGD 340
Query: 69 VQRARHIFERLVQ-CHPYN--------LSAWINFADFE-MKMGEVDRARNVYECAVEIFL 118
+ R +ER + P N + WIN+A +E ++ + +R R +Y+ +E+ +
Sbjct: 341 RDQIRETYERAISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLEL-I 399
Query: 119 ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178
+L++ +A+FE CKE RAR A+ P+ + L+R ++ E Q
Sbjct: 400 PHKQFTFSKLWLLYAQFE---IRCKELQRARKALGLAIGMCPRDK---LFRGYIDLEIQL 453
Query: 179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP 238
+ E + R+ YE + P N TW + LE +G+ +R R ++E A+
Sbjct: 454 REFE--------RCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPR 505
Query: 239 PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277
+ W+ YI EV G+ E R +Y L
Sbjct: 506 LDMPELLWKAYIDF--------EVALGETELARQLYERL 536
Score = 160 (61.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 76/342 (22%), Positives = 135/342 (39%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE + AR I+ER + +H WL Y + +++ +V AR++++R
Sbjct: 79 WIKYAQWEEQQQEIQRARSIWERALD--NEHRNVTLWLKYAEMEMKNKQVNHARNLWDRA 136
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
V P W + E + V AR V+E +E EQ + + FE
Sbjct: 137 VTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWME------WQPEEQAWQTYVNFE--- 187
Query: 140 CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDG 199
KE DRAR IY+ + P + + KF FE+ +G G + +D
Sbjct: 188 LRYKEIDRAREIYERFVYVHPDVKN---WIKFARFEESHGFIHGSRRVFERAVEFFGDDY 244
Query: 200 VRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259
+ + + + R EE +R R +Y+ A+ ++P + ++ Y Y
Sbjct: 245 IEER-----LFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDR 299
Query: 260 KEVDAGDLERTRDVYR-------TLFIFYFSFSPRMEERRIFKKYIEM-ELCLGNIDPCR 311
++ + + + Y T + +F + +E + E E + N+ P
Sbjct: 300 AGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPAN 359
Query: 312 KLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
EK W Y W Y E+ ++ ER R I++ +
Sbjct: 360 ---EKNF-WR-RYIYLWINYALYEELEAEDAERTRQIYKTCL 396
Score = 154 (59.3 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 59/238 (24%), Positives = 112/238 (47%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYI 60
+ R A + + PR D+L+ YI +E L R ++E+++ + P++ W+ +
Sbjct: 423 LQRARKALGLAIGMCPR-DKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFA 481
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSA--WINFADFEMKMGEVDRARNVYECAVEIFL 118
+ + + RAR IFE VQ ++ W + DFE+ +GE + AR +YE +E
Sbjct: 482 ELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYERLLE--- 538
Query: 119 ADDHDEAEQLFVAFAKFE------EMGCNCK-ETDRARCIYKFALDRIPK-GRAED---L 167
+ +++++FAKFE + G + + AR IY+ A + + + G E L
Sbjct: 539 ---RTQHVKVWMSFAKFEMGLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKESRVLL 595
Query: 168 YRKFLAFEKQYGDREGIEDAIAGKM--RLQYEDGVRKNPMNYDTW---FDYIRLEERV 220
+ FE+ D + ++ + KM R++ + + + W FDYI E+ +
Sbjct: 596 LEAWRDFERDASDSQEMQK-VMDKMPRRIKKRQKIVSDNGVEEGWEEVFDYIFPEDEM 652
Score = 150 (57.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 64/268 (23%), Positives = 115/268 (42%)
Query: 22 LWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSYIKFKLRYNEVQRARHI 75
LW NY EE + RQI++ + +P + WL Y +F++R E+QRAR
Sbjct: 370 LWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKA 429
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
+ P + + + D E+++ E +R R +YE +E + V + KF
Sbjct: 430 LGLAIGMCPRD-KLFRGYIDLEIQLREFERCRMLYEKFLEF--------GPENCVTWMKF 480
Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195
E+ +TDRAR I++ A+ + E L++ ++ FE G+ E +A ++
Sbjct: 481 AELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVALGETE-----LARQL--- 532
Query: 196 YEDGVRKNPMNYDTWFDYIRLEERVG----------NQERVREVYERAIANVPPAEEKRY 245
YE + + + W + + E + N + R +YERA + +K
Sbjct: 533 YERLLERT-QHVKVWMSFAKFEMGLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKES 591
Query: 246 WQRYIYLWINYALYKEVDAGDLERTRDV 273
+ W ++ E DA D + + V
Sbjct: 592 RVLLLEAWRDF----ERDASDSQEMQKV 615
Score = 147 (56.8 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 40/134 (29%), Positives = 67/134 (50%)
Query: 191 KMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI 250
+ R +ED +RKN M W Y + EE+ +R R ++ERA+ N R +
Sbjct: 60 RKRKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNE---------HRNV 110
Query: 251 YLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDP 309
LW+ YA E+ + R+++ R + I PR+ + + KY ME L N+
Sbjct: 111 TLWLKYA-EMEMKNKQVNHARNLWDRAVTIM-----PRVNQ--FWYKYTYMEEMLENVAG 162
Query: 310 CRKLYEKYLEWSPE 323
R+++E+++EW PE
Sbjct: 163 ARQVFERWMEWQPE 176
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 179/349 (51%), Positives = 228/349 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR +T PRV+Q W Y MEE LGNVAG+RQ+FERWM W P+ + W SYI
Sbjct: 147 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGSRQVFERWMEWQPEEQAWHSYIN 206
Query: 62 FKLRYNEVQRARHIF-ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
F+LRY EV RAR I+ LV HP ++ WI +A FE K AR VYE AVE F +
Sbjct: 207 FELRYKEVDRARTIYIALLVIVHP-DVKNWIKYARFEEKHCYFAHARKVYERAVEFF-GE 264
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+H + E L+VAFAKFEE N KE +R R IYK+ALDRIPK A++L++ + FEK++GD
Sbjct: 265 EHMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRIPKQDAQNLFKNYTIFEKKFGD 320
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
R GIED I K R QYE+ V+ NP NYD WFDY+RL E + E VREVYERAIANVPP
Sbjct: 321 RRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPI 380
Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM 300
+EKRYW+RYIYLWINYALY+E++A D ERTR VY+ I + +I+ Y +
Sbjct: 381 QEKRYWKRYIYLWINYALYEELEAKDPERTRQVYQAC-IELLPHK-KFTFAKIWLLYAQF 438
Query: 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
E+ N+ R+ + P+N + Y ELE L E +R R ++E
Sbjct: 439 EIRQKNLPLARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 486
Score = 392 (143.0 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 120/372 (32%), Positives = 184/372 (49%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWM-PDHEGWLSYIKFKL 64
R ++R + P +Q W++YI E V AR I+ + + PD + W+ Y +F+
Sbjct: 185 RQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYIALLVIVHPDVKNWIKYARFEE 243
Query: 65 RYNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
++ AR ++ER V+ + ++ FA FE E +R R +Y+ A++ D
Sbjct: 244 KHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIPKQD 303
Query: 122 HDEAEQLFVAFAKFEE-MGCNCKETDRARCIYKFALDRIPKGRAE--DLYRKFLAFEKQY 178
A+ LF + FE+ G D +F + K D + +L +
Sbjct: 304 ---AQNLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 360
Query: 179 GD----REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERA 233
D RE E AIA +Q E K + Y W +Y EE + ER R+VY+
Sbjct: 361 ADAETVREVYERAIANVPPIQ-EKRYWKRYI-Y-LWINYALYEELEAKDPERTRQVYQAC 417
Query: 234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRI 293
I +P K++ + +W+ YA + E+ +L R T S + + ++
Sbjct: 418 IELLP---HKKF--TFAKIWLLYAQF-EIRQKNLPLARRALGT------SIG-KCPKNKL 464
Query: 294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA 353
FK YIE+EL L D CRKLYEK+LE++PENC +W K+ ELE L + +RARAI+ELAI+
Sbjct: 465 FKGYIELELQLREFDRCRKLYEKFLEFAPENCTSWIKFAELETILGDIDRARAIYELAIS 524
Query: 354 QPILDLPEFLWK 365
QP LD+PE LWK
Sbjct: 525 QPRLDMPEVLWK 536
Score = 213 (80.0 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 88/356 (24%), Positives = 153/356 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I R+ ++R + + R LW Y ME V AR I++R + +P ++ W Y
Sbjct: 113 IQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 172
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ V +R +FER ++ P AW ++ +FE++ EVDRAR +Y + I
Sbjct: 173 YMEEMLGNVAGSRQVFERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYIALLVIV--- 228
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED-LYRKFLAFEKQYG 179
H + + ++ +A+FEE C AR +Y+ A++ + ++ LY F FE+
Sbjct: 229 -HPDVKN-WIKYARFEEKHCYFAH---ARKVYERAVEFFGEEHMDEHLYVAFAKFEENQK 283
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+ E + + K L D + K + + +Y E++ G++ + ++
Sbjct: 284 EFERVR--VIYKYAL---DRIPKQDAQ-NLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYE 337
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E K Y W +Y E DA D E R+VY + +R +I
Sbjct: 338 EEVKANPHNYD-AWFDYLRLVESDA-DAETVREVYERAIANVPPIQEKRYWKRYIYLWIN 395
Query: 300 MELC--LGNIDP--CRKLYEKYLEWSPENCYAWSK----YTELE---KSLDETERA 344
L L DP R++Y+ +E P + ++K Y + E K+L RA
Sbjct: 396 YALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLARRA 451
Score = 191 (72.3 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 79/329 (24%), Positives = 141/329 (42%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ + +S WI +A +E + E+ RAR++YE A+++ D+
Sbjct: 81 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV----DYRNV----T 132
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190
+ K+ EM ++ + AR I+ A+ +P R + K+ E+ G+ G
Sbjct: 133 LWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNVAGSRQVFER 190
Query: 191 KMRLQYEDGVRKNPMNYD-------------------------TWFDYIRLEERVGNQER 225
M Q E+ + +N++ W Y R EE+
Sbjct: 191 WMEWQPEEQAWHSYINFELRYKEVDRARTIYIALLVIVHPDVKNWIKYARFEEKHCYFAH 250
Query: 226 VREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285
R+VYERA+ EE + ++Y + +A ++E + + ER R +Y+ +
Sbjct: 251 ARKVYERAVEFF--GEE--HMDEHLY--VAFAKFEE-NQKEFERVRVIYK----YALDRI 299
Query: 286 PRMEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEKS 337
P+ + + +FK Y E G+ + R YE+ ++ +P N AW Y L +S
Sbjct: 300 PKQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVES 359
Query: 338 LDETERARAIFELAIAQ-PILDLPEFLWK 365
+ E R ++E AIA P + + WK
Sbjct: 360 DADAETVREVYERAIANVPPIQEKRY-WK 387
Score = 188 (71.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 81/342 (23%), Positives = 153/342 (44%)
Query: 8 AWDRVVTLSPRVD--QLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGW 56
A DR+ P+ D L+ NY E+ G+ G I +E + P +++ W
Sbjct: 295 ALDRI----PKQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAW 350
Query: 57 LSYIKFKLRYNEVQRARHIFERLVQCHP------Y---NLSAWINFADFE-MKMGEVDRA 106
Y++ + + R ++ER + P Y + WIN+A +E ++ + +R
Sbjct: 351 FDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWINYALYEELEAKDPERT 410
Query: 107 RNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED 166
R VY+ +E+ L ++++ +A+FE K AR ++ + PK +
Sbjct: 411 RQVYQACIEL-LPHKKFTFAKIWLLYAQFE---IRQKNLPLARRALGTSIGKCPKNK--- 463
Query: 167 LYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERV 226
L++ ++ E Q RE + R YE + P N +W + LE +G+ +R
Sbjct: 464 LFKGYIELELQL--RE------FDRCRKLYEKFLEFAPENCTSWIKFAELETILGDIDRA 515
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R +YE AI+ P + LW +Y + E++ + E+TR++YR L
Sbjct: 516 RAIYELAISQ-PRLDMPEV------LWKSYIDF-EIEQEEYEKTRNLYRRLL-------Q 560
Query: 287 RMEERRIFKKYIEMELCLG---NIDPCRKLYEKYLEWSPENC 325
R + +++ + + EL G ++ CR++YE+ + + NC
Sbjct: 561 RTQHVKVWISFAQFELSAGKEESLSKCRQIYEEANK-AMRNC 601
Score = 181 (68.8 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 78/342 (22%), Positives = 147/342 (42%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE+L + AR I+ER + D+ WL Y + +++ +V AR+I++R
Sbjct: 100 WIKYAQWEESLKEIQRARSIYERALD--VDYRNVTLWLKYAEMEMKNRQVNHARNIWDRA 157
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ P W + E +G V +R V+E +E EQ + ++ FE
Sbjct: 158 ITTLPRVNQFWYKYTYMEEMLGNVAGSRQVFERWME------WQPEEQAWHSYINFE--- 208
Query: 140 CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDG 199
KE DRAR IY AL I ++ + K+ FE+++ A A K+ + +
Sbjct: 209 LRYKEVDRARTIY-IALLVIVHPDVKN-WIKYARFEEKH-----CYFAHARKVYERAVEF 261
Query: 200 VRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259
+ M+ + + + EE ERVR +Y+ A+ +P + + ++ Y +
Sbjct: 262 FGEEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIPKQDAQNLFKNYTIFEKKFGDR 321
Query: 260 KEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIEM-ELCLGNIDPCR 311
+ ++ + + R Y + +F + +E + E+ E + N+ P +
Sbjct: 322 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQ 381
Query: 312 KLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
+ ++Y W Y W Y E+ + ER R +++ I
Sbjct: 382 E--KRY--WK-RYIYLWINYALYEELEAKDPERTRQVYQACI 418
Score = 168 (64.2 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 84/367 (22%), Positives = 155/367 (42%)
Query: 2 IDHGRNAWDRV-VTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP----DHEGW 56
+D R + + V + P V W Y R EE A AR+++ER + + D +
Sbjct: 214 VDRARTIYIALLVIVHPDVKN-WIKYARFEEKHCYFAHARKVYERAVEFFGEEHMDEHLY 272
Query: 57 LSYIKFKLRYNEVQRARHIF----ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYEC 112
+++ KF+ E +R R I+ +R+ + NL + N+ FE K G DR R + +
Sbjct: 273 VAFAKFEENQKEFERVRVIYKYALDRIPKQDAQNL--FKNYTIFEKKFG--DR-RGIEDI 327
Query: 113 AVEI--FLADDHDEAE-QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYR 169
V F ++ +A + A+ + + + + + R +Y+ A+ +P + + ++
Sbjct: 328 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWK 387
Query: 170 KFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQER 225
+++ Y E +E + R Y+ + P T W Y + E R N
Sbjct: 388 RYIYLWINYALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPL 447
Query: 226 VREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285
R +I P + + ++ YI L E+ + +R R +Y + F+
Sbjct: 448 ARRALGTSIGKCP---KNKLFKGYIEL--------ELQLREFDRCRKLYEK----FLEFA 492
Query: 286 PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDET 341
P E + K+ E+E LG+ID R +YE + PE W Y + E +E
Sbjct: 493 P--ENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPE--VLWKSYIDFEIEQEEY 548
Query: 342 ERARAIF 348
E+ R ++
Sbjct: 549 EKTRNLY 555
Score = 156 (60.0 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 50/183 (27%), Positives = 85/183 (46%)
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+++ D E + D K R +ED +RKN W Y + EE + +R R +YERA+
Sbjct: 66 QQKITDVEELNDYKLRK-RKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 124
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ Y R + LW+ YA E+ + R+++ + PR+ + +
Sbjct: 125 -------DVDY--RNVTLWLKYA-EMEMKNRQVNHARNIWDRAI----TTLPRVNQ--FW 168
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPEN--CYAWSKYTELEKSLDETERARAIFELAI 352
KY ME LGN+ R+++E+++EW PE +++ + K +D R I L I
Sbjct: 169 YKYTYMEEMLGNVAGSRQVFERWMEWQPEEQAWHSYINFELRYKEVDRA-RTIYIALLVI 227
Query: 353 AQP 355
P
Sbjct: 228 VHP 230
Score = 156 (60.0 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 56/231 (24%), Positives = 101/231 (43%)
Query: 22 LWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSYIKFKLRYNEVQRARHI 75
LW NY EE + RQ+++ + +P + WL Y +F++R + AR
Sbjct: 392 LWINYALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLARRA 451
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
+ P N + + + E+++ E DR R +YE +E A + ++ KF
Sbjct: 452 LGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEF--------APENCTSWIKF 502
Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195
E+ + DRAR IY+ A+ + E L++ ++ FE + + E K R
Sbjct: 503 AELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEEYE--------KTRNL 554
Query: 196 YEDGVRKNPMNYDTWFDYIRLEERVGNQE---RVREVYERAIANVPPAEEK 243
Y +++ + W + + E G +E + R++YE A + EEK
Sbjct: 555 YRRLLQRT-QHVKVWISFAQFELSAGKEESLSKCRQIYEEANKAMRNCEEK 604
Score = 155 (59.6 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 49/176 (27%), Positives = 88/176 (50%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + +P W + +E LG++ AR I+E + MP+ W S
Sbjct: 479 DRCRKLYEKFLEFAPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVL-WKS 537
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE---VDRARNVYECAVE 115
YI F++ E ++ R+++ RL+Q ++ WI+FA FE+ G+ + + R +YE A +
Sbjct: 538 YIDFEIEQEEYEKTRNLYRRLLQ-RTQHVKVWISFAQFELSAGKEESLSKCRQIYEEANK 596
Query: 116 IFL-ADDHDEAEQLFVAFAKFEE-MGCNCKETDRARCIYKFALDRIPKGR---AED 166
++ +E L ++ FEE G ++ + R I K ++I K R AED
Sbjct: 597 AMRNCEEKEERVMLLESWKTFEEEFGT---DSTKER-IEKLMPEKIKKRRKLQAED 648
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 171/349 (48%), Positives = 227/349 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR +T+ PRV+Q W Y MEE LGN+AG RQ+FERWM W P+ + W SYI
Sbjct: 130 VNHARNIWDRAITILPRVNQFWYKYTYMEEMLGNIAGCRQVFERWMEWEPEEQAWHSYIN 189
Query: 62 FKLRYNEVQRARHIFER-LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
F+LRY EV +AR I+E+ LV HP + WI +A FE K G V R R V+E AVE F
Sbjct: 190 FELRYKEVDKARSIYEKALVMVHP-EVKNWIKYAHFEEKHGYVARGRKVFERAVEFF--G 246
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ +E L+VAFA+FEE KE +R R IYK+ALDRIPK +A++L++ + FEK++GD
Sbjct: 247 EEQVSENLYVAFARFEEKQ---KEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFGD 303
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
R GIED I K R QYE+ V+ NP NYD WFDY+RL E + + VREVYERAIAN+PP
Sbjct: 304 RRGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPI 363
Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM 300
+EKR+W+RYIYLWINYALY+E++ D ERTR VY+ + +I+ Y +
Sbjct: 364 QEKRHWRRYIYLWINYALYEELEVKDPERTRQVYKACLELIPH--KKFTFAKIWLLYGQF 421
Query: 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
E+ N+ R+ + P+N + Y ELE L E +R R ++E
Sbjct: 422 EIRQKNLQNARRGLGTAIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 469
Score = 430 (156.4 bits), Expect = 1.0e-39, P = 1.0e-39
Identities = 122/372 (32%), Positives = 188/372 (50%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWM-PDHEGWLSYIKFKL 64
R ++R + P +Q W++YI E V AR I+E+ + + P+ + W+ Y F+
Sbjct: 168 RQVFERWMEWEPE-EQAWHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKYAHFEE 226
Query: 65 RYNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
++ V R R +FER V+ + + ++ FA FE K E +R R +Y+ A++
Sbjct: 227 KHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYALDRI---P 283
Query: 122 HDEAEQLFVAFAKFEE-MGCNCKETDRARCIYKFALDRIPKGRAE--DLYRKFLAFEKQY 178
+A++LF + FE+ G D +F + K D + +L +
Sbjct: 284 KQQAQELFKNYTVFEKRFGDRRGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 343
Query: 179 GD----REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERA 233
D RE E AIA +Q + R+ Y W +Y EE V + ER R+VY+
Sbjct: 344 ADADTVREVYERAIANIPPIQEKRHWRR--YIY-LWINYALYEELEVKDPERTRQVYKAC 400
Query: 234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRI 293
+ +P K++ + +W+ Y + E+ +L+ R T + + ++
Sbjct: 401 LELIP---HKKF--TFAKIWLLYGQF-EIRQKNLQNARRGLGTAI-------GKCPKNKL 447
Query: 294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA 353
FK YIE+EL L D CRKLYEKYLE+SPENC W K+ ELE L +T+R+RAIFELAI
Sbjct: 448 FKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDTDRSRAIFELAIG 507
Query: 354 QPILDLPEFLWK 365
QP LD+PE LWK
Sbjct: 508 QPRLDMPEVLWK 519
Score = 215 (80.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 89/363 (24%), Positives = 157/363 (43%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
+ R+ ++R + + R LW Y ME V AR I++R + +P ++ W Y
Sbjct: 96 VQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYT 155
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ + R +FER ++ P AW ++ +FE++ EVD+AR++YE A+ +
Sbjct: 156 YMEEMLGNIAGCRQVFERWMEWEPEE-QAWHSYINFELRYKEVDKARSIYEKALVMV--- 211
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYG 179
H E + ++ +A FEE R R +++ A++ + + +E+LY F FE++
Sbjct: 212 -HPEVKN-WIKYAHFEEKH---GYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQK 266
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+ E + + K L D + K + + +Y E+R G++ + +V
Sbjct: 267 EFERVR--VIYKYAL---DRIPKQQAQ-ELFKNYTVFEKRFGDRRGIEDVIVSKRRFQYE 320
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E K Y W +Y E DA D + R+VY + RR +I
Sbjct: 321 EEVKANPHNYD-AWFDYLRLVESDA-DADTVREVYERAIANIPPIQEKRHWRRYIYLWIN 378
Query: 300 MELC--LGNIDP--CRKLYEKYLEWSPENCYAWSK----YTELEKSLDETERARAIFELA 351
L L DP R++Y+ LE P + ++K Y + E + AR A
Sbjct: 379 YALYEELEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNARRGLGTA 438
Query: 352 IAQ 354
I +
Sbjct: 439 IGK 441
Score = 193 (73.0 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 79/343 (23%), Positives = 146/343 (42%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE+L V +R I+ER + DH WL Y + +++ +V AR+I++R
Sbjct: 83 WIKYAQWEESLQEVQRSRSIYERALD--VDHRNITLWLKYAEMEMKNRQVNHARNIWDRA 140
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ P W + E +G + R V+E +E + EQ + ++ FE
Sbjct: 141 ITILPRVNQFWYKYTYMEEMLGNIAGCRQVFERWME------WEPEEQAWHSYINFE--- 191
Query: 140 CNCKETDRARCIYKFALDRI-PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
KE D+AR IY+ AL + P+ + + K+ FE+++G + E+
Sbjct: 192 LRYKEVDKARSIYEKALVMVHPEVKN---WIKYAHFEEKHGYVARGRKVFERAVEFFGEE 248
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
V +N + + R EE+ ERVR +Y+ A+ +P + + ++ Y +
Sbjct: 249 QVSEN-----LYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFGD 303
Query: 259 YKEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIEM-ELCLGNIDPC 310
+ ++ + + R Y + +F + +E E+ E + NI P
Sbjct: 304 RRGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPP- 362
Query: 311 RKLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
+ EK W Y W Y E+ + + ER R +++ +
Sbjct: 363 --IQEKR-HWR-RYIYLWINYALYEELEVKDPERTRQVYKACL 401
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 83/366 (22%), Positives = 158/366 (43%)
Query: 2 IDHGRNAWDR-VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG----W 56
+D R+ +++ +V + P V W Y EE G VA R++FER + + + + +
Sbjct: 197 VDKARSIYEKALVMVHPEVKN-WIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLY 255
Query: 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI--NFADFEMKMGEVDRARNVYECAV 114
+++ +F+ + E +R R I++ + P + + N+ FE + G DR R + + V
Sbjct: 256 VAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFG--DR-RGIEDVIV 312
Query: 115 EI--FLADDHDEAE-QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF 171
F ++ +A + A+ + + + + D R +Y+ A+ IP + + +R++
Sbjct: 313 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRY 372
Query: 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERVR 227
+ Y E +E + R Y+ + P T W Y + E R N + R
Sbjct: 373 IYLWINYALYEELEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNAR 432
Query: 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
AI P + + ++ YI L E+ + +R R +Y Y FSP
Sbjct: 433 RGLGTAIGKCP---KNKLFKGYIEL--------ELQLREFDRCRKLYEK----YLEFSP- 476
Query: 288 MEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETER 343
E + K+ E+E LG+ D R ++E + PE W Y + E +E +
Sbjct: 477 -ENCTTWIKFAELETILGDTDRSRAIFELAIGQPRLDMPE--VLWKSYIDFEIEQEEYDN 533
Query: 344 ARAIFE 349
R +++
Sbjct: 534 TRGLYK 539
Score = 178 (67.7 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 75/316 (23%), Positives = 135/316 (42%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
+ R FE ++ + +S WI +A +E + EV R+R++YE A+++ DH
Sbjct: 64 KKRKGFEDNIRKNRTVISNWIKYAQWEESLQEVQRSRSIYERALDV----DHRN----IT 115
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190
+ K+ EM ++ + AR I+ A+ +P R + K+ E+ G+ G
Sbjct: 116 LWLKYAEMEMKNRQVNHARNIWDRAITILP--RVNQFWYKYTYMEEMLGNIAGCRQVFER 173
Query: 191 KMRLQYEDGVRKNPMNYD-------------------------TWFDYIRLEERVGNQER 225
M + E+ + +N++ W Y EE+ G R
Sbjct: 174 WMEWEPEEQAWHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKYAHFEEKHGYVAR 233
Query: 226 VREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285
R+V+ERA+ EE Q L++ +A ++E + ER R +Y+ +
Sbjct: 234 GRKVFERAVEFF--GEE----QVSENLYVAFARFEEKQK-EFERVRVIYK----YALDRI 282
Query: 286 PRMEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEKS 337
P+ + + +FK Y E G+ + R YE+ ++ +P N AW Y L +S
Sbjct: 283 PKQQAQELFKNYTVFEKRFGDRRGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVES 342
Query: 338 LDETERARAIFELAIA 353
+ + R ++E AIA
Sbjct: 343 DADADTVREVYERAIA 358
Score = 175 (66.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 84/373 (22%), Positives = 157/373 (42%)
Query: 8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGWLS 58
A DR+ + +L+ NY E+ G+ G + +E + P +++ W
Sbjct: 278 ALDRIP--KQQAQELFKNYTVFEKRFGDRRGIEDVIVSKRRFQYEEEVKANPHNYDAWFD 335
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHP----------YNLSAWINFADFE-MKMGEVDRAR 107
Y++ + R ++ER + P Y + WIN+A +E +++ + +R R
Sbjct: 336 YLRLVESDADADTVREVYERAIANIPPIQEKRHWRRY-IYLWINYALYEELEVKDPERTR 394
Query: 108 NVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL 167
VY+ +E+ A+ +++ + +FE K AR A+ + PK + L
Sbjct: 395 QVYKACLELIPHKKFTFAK-IWLLYGQFE---IRQKNLQNARRGLGTAIGKCPKNK---L 447
Query: 168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR 227
++ ++ E Q RE + R YE + +P N TW + LE +G+ +R R
Sbjct: 448 FKGYIELELQL--RE------FDRCRKLYEKYLEFSPENCTTWIKFAELETILGDTDRSR 499
Query: 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
++E AI P + LW +Y + E++ + + TR +Y+ L R
Sbjct: 500 AIFELAIGQ-PRLDMPEV------LWKSYIDF-EIEQEEYDNTRGLYKRLL-------QR 544
Query: 288 MEERRIFKKYIEMELCLGNIDP---CRKLYEKYLEWSPENCY----------AWSKYTEL 334
+ +++ Y + EL + D CR++YE+ + +NC +W Y E
Sbjct: 545 TQHVKVWISYAQFELSIDTEDRVQRCRQVYEEANK-GMQNCEEKEERLMLLESWRDYEEE 603
Query: 335 EKSLDETERARAI 347
S ER R +
Sbjct: 604 FGSFTHKERVRKL 616
Score = 174 (66.3 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 54/172 (31%), Positives = 85/172 (49%)
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
D+E + D K R +ED +RKN W Y + EE + +R R +YERA+ +V
Sbjct: 54 DKEELNDYKL-KKRKGFEDNIRKNRTVISNWIKYAQWEESLQEVQRSRSIYERAL-DVD- 110
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERRIFKKYI 298
R I LW+ YA E+ + R+++ R + I PR+ + + KY
Sbjct: 111 -------HRNITLWLKYA-EMEMKNRQVNHARNIWDRAITIL-----PRVNQ--FWYKYT 155
Query: 299 EMELCLGNIDPCRKLYEKYLEWSPENCYAWS------KYTELEKSLDETERA 344
ME LGNI CR+++E+++EW PE S +Y E++K+ E+A
Sbjct: 156 YMEEMLGNIAGCRQVFERWMEWEPEEQAWHSYINFELRYKEVDKARSIYEKA 207
Score = 145 (56.1 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 46/172 (26%), Positives = 81/172 (47%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + SP W + +E LG+ +R IFE + MP+ W S
Sbjct: 462 DRCRKLYEKYLEFSPENCTTWIKFAELETILGDTDRSRAIFELAIGQPRLDMPEVL-WKS 520
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG---EVDRARNVYECAVE 115
YI F++ E R +++RL+Q ++ WI++A FE+ + V R R VYE A +
Sbjct: 521 YIDFEIEQEEYDNTRGLYKRLLQ-RTQHVKVWISYAQFELSIDTEDRVQRCRQVYEEANK 579
Query: 116 -IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED 166
+ ++ +E L ++ +EE + +R R + + + K AED
Sbjct: 580 GMQNCEEKEERLMLLESWRDYEEEFGSFTHKERVRKLLPEKVKKRRKITAED 631
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 177/354 (50%), Positives = 228/354 (64%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
++H RN WDR +T PRV+Q W Y MEE LGN+AGARQ+FERWM W P+ + W SYI
Sbjct: 236 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYIN 295
Query: 62 FKLRYNEVQRARHIF-----ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
F+LRY EV RAR I+ LV HP ++ WI +A FE K G AR VYE AVE
Sbjct: 296 FELRYKEVDRARTIYYFLNSPELVLVHP-DVKNWIKYARFEEKHGYFAHARKVYERAVEF 354
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
F D+H + E L+VAFAKFEE N KE +R R IYK+ALDRI K A++L++ + FEK
Sbjct: 355 F-GDEHMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEK 409
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
++GDR GIED I K R QYE+ V+ NP NYD WFDY+RL E E VREVYERAIAN
Sbjct: 410 KFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIAN 469
Query: 237 VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFK 295
VPP +EKR+W+RYIYLW+NYALY+E++A D ERTR VY+ +L + + +++
Sbjct: 470 VPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWL 526
Query: 296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
Y + E+ N+ L + P+N + Y ELE L E +R R ++E
Sbjct: 527 LYAQFEIRQKNLPVSVSLLGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 579
Score = 383 (139.9 bits), Expect = 1.6e-34, P = 1.6e-34
Identities = 115/376 (30%), Positives = 187/376 (49%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIF-----ERWMHWMPDHEGWLSYI 60
R ++R + P +Q W++YI E V AR I+ + PD + W+ Y
Sbjct: 274 RQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYYFLNSPELVLVHPDVKNWIKYA 332
Query: 61 KFKLRYNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF 117
+F+ ++ AR ++ER V+ + ++ FA FE E +R R +Y+ A++
Sbjct: 333 RFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRI 392
Query: 118 LADDHDEAEQLFVAFAKFEE-MGCNCKETDRARCIYKFALDRIPKGRAE--DLYRKFLAF 174
EA++LF + FE+ G D +F + K D + +L
Sbjct: 393 ---SKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRL 449
Query: 175 EKQYGD----REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREV 229
+ + RE E AIA +Q + ++ Y W +Y EE + ER R+V
Sbjct: 450 VESDAEAETVREVYERAIANVPPIQEKRHWKR--YIY-LWVNYALYEELEAKDPERTRQV 506
Query: 230 YERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME 289
Y+ ++ +P K++ + +W+ YA + E+ R +++ ++ + S +
Sbjct: 507 YQASLELIP---HKKF--TFAKMWLLYAQF-EI------RQKNLPVSVSLLGTSIG-KCP 553
Query: 290 ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
+ ++FK YIE+EL L D CRKLYEK+LE+ PENC +W K+ ELE L + ERARAI+E
Sbjct: 554 KNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYE 613
Query: 350 LAIAQPILDLPEFLWK 365
LAI+QP LD+PE LWK
Sbjct: 614 LAISQPRLDMPEVLWK 629
Score = 214 (80.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 84/339 (24%), Positives = 150/339 (44%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
I R+ ++R + + R LW Y ME V AR I++R + +P ++ W Y
Sbjct: 202 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 261
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ + AR +FER ++ P AW ++ +FE++ EVDRAR +Y L
Sbjct: 262 YMEEMLGNIAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYYFLNSPELVL 320
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI-PKGRAEDLYRKFLAFEKQYG 179
H + + ++ +A+FEE AR +Y+ A++ + E LY F FE+
Sbjct: 321 VHPDVKN-WIKYARFEEKHGYFAH---ARKVYERAVEFFGDEHMDEHLYVAFAKFEENQK 376
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
+ E + + K L D + K + + +Y E++ G++ + ++
Sbjct: 377 EFERVR--VIYKYAL---DRISKQEAQ-ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYE 430
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
E K Y W +Y E DA + E R+VY + P ++E+R +K+YI
Sbjct: 431 EEVKANPHNYD-AWFDYLRLVESDA-EAETVREVYERAI----ANVPPIQEKRHWKRYIY 484
Query: 300 M--------ELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
+ EL + + R++Y+ LE P + ++K
Sbjct: 485 LWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAK 523
Score = 185 (70.2 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 79/341 (23%), Positives = 152/341 (44%)
Query: 8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQI--------FERWMHWMP-DHEGWLS 58
A DR+ +L+ NY E+ G+ G I +E + P +++ W
Sbjct: 388 ALDRIS--KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFD 445
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHP----------YNLSAWINFADFE-MKMGEVDRAR 107
Y++ E + R ++ER + P Y + W+N+A +E ++ + +R R
Sbjct: 446 YLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRY-IYLWVNYALYEELEAKDPERTR 504
Query: 108 NVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL 167
VY+ ++E+ A+ +++ +A+FE K + + ++ + PK + L
Sbjct: 505 QVYQASLELIPHKKFTFAK-MWLLYAQFE---IRQKNLPVSVSLLGTSIGKCPKNK---L 557
Query: 168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR 227
++ ++ E Q RE + R YE + P N +W + LE +G+ ER R
Sbjct: 558 FKGYIELELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERAR 609
Query: 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
+YE AI+ P + LW +Y + E++ + ERTR++YR L R
Sbjct: 610 AIYELAISQ-PRLDMPEV------LWKSYIDF-EIEQEETERTRNLYRRLL-------QR 654
Query: 288 MEERRIFKKYIEMELCL---GNIDPCRKLYEKYLEWSPENC 325
+ +++ + + EL G++ CR++YE+ + + NC
Sbjct: 655 TQHVKVWISFAQFELSSRKEGSLAKCRQIYEEANK-TMRNC 694
Score = 177 (67.4 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 49/179 (27%), Positives = 88/179 (49%)
Query: 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE 115
W+ Y +++ E+QRAR I+ER + N++ W+ +A+ EMK +V+ ARN+++ A+
Sbjct: 189 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 248
Query: 116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175
Q + + EEM N AR +++ ++ P+ E + ++ FE
Sbjct: 249 TL-----PRVNQFWYKYTYMEEMLGNIAG---ARQVFERWMEWQPE---EQAWHSYINFE 297
Query: 176 KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+Y + ++ A L + V +P + W Y R EE+ G R+VYERA+
Sbjct: 298 LRYKE---VDRARTIYYFLNSPELVLVHP-DVKNWIKYARFEEKHGYFAHARKVYERAV 352
Score = 170 (64.9 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 84/356 (23%), Positives = 152/356 (42%)
Query: 12 VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEG---WLSYIKFKLRYN 67
+V + P V W Y R EE G A AR+++ER + + D H ++++ KF+
Sbjct: 318 LVLVHPDVKN-WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQK 376
Query: 68 EVQRARHIF----ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI--FLADD 121
E +R R I+ +R+ + L + N+ FE K G DR R + + V F ++
Sbjct: 377 EFERVRVIYKYALDRISKQEAQEL--FKNYTIFEKKFG--DR-RGIEDIIVSKRRFQYEE 431
Query: 122 HDEAE-QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+A + A+ + + + E + R +Y+ A+ +P + + +++++ Y
Sbjct: 432 EVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYAL 491
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERVREVYERAIAN 236
E +E + R Y+ + P T W Y + E R N + +I
Sbjct: 492 YEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPVSVSLLGTSIGK 551
Query: 237 VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKK 296
P + + ++ YI L E+ + +R R +Y + F P E + K
Sbjct: 552 CP---KNKLFKGYIEL--------ELQLREFDRCRKLYEK----FLEFGP--ENCTSWIK 594
Query: 297 YIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETERARAIF 348
+ E+E LG+I+ R +YE + PE W Y + E +ETER R ++
Sbjct: 595 FAELETILGDIERARAIYELAISQPRLDMPE--VLWKSYIDFEIEQEETERTRNLY 648
Score = 160 (61.4 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 45/149 (30%), Positives = 73/149 (48%)
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+++ D E + D K R +ED +RKN W Y + EE + +R R +YERA+
Sbjct: 155 QQKITDEEELNDYKLRK-RKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 213
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ Y R I LW+ YA E+ + R+++ + PR+ + +
Sbjct: 214 -------DVDY--RNITLWLKYA-EMEMKNRQVNHARNIWDRAI----TTLPRVNQ--FW 257
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPE 323
KY ME LGNI R+++E+++EW PE
Sbjct: 258 YKYTYMEEMLGNIAGARQVFERWMEWQPE 286
Score = 158 (60.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + P W + +E LG++ AR I+E + MP+ W S
Sbjct: 572 DRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKS 630
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM---KMGEVDRARNVYECAVE 115
YI F++ E +R R+++ RL+Q ++ WI+FA FE+ K G + + R +YE A +
Sbjct: 631 YIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFAQFELSSRKEGSLAKCRQIYEEANK 689
Query: 116 IFL-ADDHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGR 163
++ +E L ++ FE E G +D+ R + K +++ K R
Sbjct: 690 TMRNCEEKEERLMLLESWRSFEDEFGT---VSDKER-VDKLMPEKVKKRR 735
Score = 158 (60.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 71/314 (22%), Positives = 135/314 (42%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ + +S WI +A +E + E+ RAR++YE A+++ D+
Sbjct: 170 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV----DYRN----IT 221
Query: 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190
+ K+ EM ++ + AR I+ A+ +P R + K+ E+ G+ G
Sbjct: 222 LWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNIAGARQVFER 279
Query: 191 KMRLQYEDGVRKNPMNYD----------TWFDYIRLEERVGNQERVREVYERAIANVPP- 239
M Q E+ + +N++ T + ++ E V V+ + A
Sbjct: 280 WMEWQPEEQAWHSYINFELRYKEVDRARTIYYFLNSPELVLVHPDVKNWIKYARFEEKHG 339
Query: 240 --AEEKRYWQRYI----------YLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
A ++ ++R + +L++ +A ++E + + ER R +Y+ + +
Sbjct: 340 YFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEE-NQKEFERVRVIYK----YALDRISK 394
Query: 288 MEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD 339
E + +FK Y E G+ + R YE+ ++ +P N AW Y L +S
Sbjct: 395 QEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDA 454
Query: 340 ETERARAIFELAIA 353
E E R ++E AIA
Sbjct: 455 EAETVREVYERAIA 468
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 52/244 (21%), Positives = 103/244 (42%)
Query: 22 LWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSYIKFKLRYNEVQRARHI 75
LW NY EE + RQ+++ + +P + WL Y +F++R + + +
Sbjct: 485 LWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPVSVSL 544
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
+ P N + + + E+++ E DR R +YE +E + ++ KF
Sbjct: 545 LGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEF--------GPENCTSWIKF 595
Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195
E+ + +RAR IY+ A+ + E L++ ++ FE IE + R
Sbjct: 596 AELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEETERTRNL 647
Query: 196 YEDGVRKNPMNYDTWFDYIRLE---ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYL 252
Y +++ + W + + E + G+ + R++YE A + EEK +
Sbjct: 648 YRRLLQRT-QHVKVWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLES 706
Query: 253 WINY 256
W ++
Sbjct: 707 WRSF 710
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 162/352 (46%), Positives = 226/352 (64%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
I+ RN WDR V L PRV QLW Y ME+ LGN AR IFERWM W P+ + W SY+K
Sbjct: 125 INLARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQAWNSYLK 184
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+ R + R IFE+ + HPY + WI + FE ++G ++ AR +++ A+E FL +D
Sbjct: 185 FEQRLKLFENTRLIFEKYILVHPY-IKTWIKYTKFEERLGNIENARTIFQRAIE-FLGED 242
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
++ EQLF+AFAKFEE KE +RAR IYK+A+D +PK RA+DL+ F FEKQ+GDR
Sbjct: 243 GND-EQLFIAFAKFEE---KYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDR 298
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
GIED + GK R QYE+ ++KN NYD WFDY+++EE G E+ RE+YER+I N+PP
Sbjct: 299 IGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTN 358
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSPRMEERRIFKKY 297
EK++W+RYIYLWINYAL++E+ + D+ER R VY FSFS +I+ Y
Sbjct: 359 EKKHWKRYIYLWINYALFEELISKDMERARSVYSECIKLIPHKEFSFS------KIWILY 412
Query: 298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
E+ N+D R +Y + + +P++ + +Y LE L +R R ++E
Sbjct: 413 ANFEIRQLNLDKARLIYGQAIGRNPKS-KIFDQYIHLEIELGNFDRVRTLYE 463
Score = 432 (157.1 bits), Expect = 4.4e-40, P = 4.4e-40
Identities = 120/368 (32%), Positives = 183/368 (49%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + P Q WN+Y++ E+ L R IFE+++ P + W+ Y KF+ R
Sbjct: 163 RAIFERWMQWKPE-PQAWNSYLKFEQRLKLFENTRLIFEKYILVHPYIKTWIKYTKFEER 221
Query: 66 YNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
++ AR IF+R ++ + +I FA FE K E++RAR +Y+ A++
Sbjct: 222 LGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHV---PK 278
Query: 123 DEAEQLFVAFAKFEEM-GCNCKETDRARCIYKFALDRIPKGRAE--DLYRKFLAFEKQYG 179
A+ LF F FE+ G D +F + K ++ D++ +L E+ G
Sbjct: 279 SRAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEING 338
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYD-TWFDYIRLEERVG-NQERVREVYERAIANV 237
+ E + + +K+ Y W +Y EE + + ER R VY I +
Sbjct: 339 EIEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMERARSVYSECIKLI 398
Query: 238 PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKY 297
P K + + +WI YA + E+ +L++ R +Y R + +IF +Y
Sbjct: 399 P---HKEF--SFSKIWILYANF-EIRQLNLDKARLIYGQAI-------GRNPKSKIFDQY 445
Query: 298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL 357
I +E+ LGN D R LYEKYLE P+NC AW K+ +LE L ET RARAIFELAI QP L
Sbjct: 446 IHLEIELGNFDRVRTLYEKYLEIMPDNCDAWCKFAQLETELGETVRARAIFELAIQQPNL 505
Query: 358 DLPEFLWK 365
D PE +WK
Sbjct: 506 DRPEVVWK 513
Score = 209 (78.6 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 88/369 (23%), Positives = 172/369 (46%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI 60
+ R+ ++R + + R+ +W Y ME N+ AR I++R + +P + W Y
Sbjct: 91 LTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYT 150
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ AR IFER +Q P AW ++ FE ++ + R ++E + +
Sbjct: 151 FMEDMLGNYPAARAIFERWMQWKP-EPQAWNSYLKFEQRLKLFENTRLIFEKYILV---- 205
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK-GRAEDLYRKFLAFEKQYG 179
H + ++ + KFEE N + AR I++ A++ + + G E L+ F FE++Y
Sbjct: 206 -HPYIKT-WIKYTKFEERLGNI---ENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYK 260
Query: 180 DREGIEDA-IAGKMRLQYEDGVRKNPMNYDTWFDYIRLE-ERVGNQERV----REVYERA 233
+ IE A + K + + R + +DT+ ++ + +R+G ++ V R YE
Sbjct: 261 E---IERARVIYKYAIDHVPKSRAKDL-FDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEE 316
Query: 234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERR 292
I K Y +W +Y +E++ G++E+TR++Y R++ + + +R
Sbjct: 317 IKK----NSKNY-----DIWFDYLKMEEIN-GEIEKTREIYERSIGNLPPTNEKKHWKRY 366
Query: 293 IFK--KY-IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK----YTELEKSLDETERAR 345
I+ Y + EL +++ R +Y + ++ P +++SK Y E ++AR
Sbjct: 367 IYLWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKAR 426
Query: 346 AIFELAIAQ 354
I+ AI +
Sbjct: 427 LIYGQAIGR 435
Score = 180 (68.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 67/258 (25%), Positives = 120/258 (46%)
Query: 52 DHEGWLSYIKFKLRYNEVQRARHIFERLV-QCHPYN--------LSAWINFADFEMKMG- 101
+++ W Y+K + E+++ R I+ER + P N + WIN+A FE +
Sbjct: 323 NYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISK 382
Query: 102 EVDRARNVYECAVEIFLADDHDEAE--QLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159
+++RAR+VY +++ H E ++++ +A FE N D+AR IY A+ R
Sbjct: 383 DMERARSVYSECIKLI---PHKEFSFSKIWILYANFEIRQLNL---DKARLIYGQAIGRN 436
Query: 160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER 219
PK + D Y + E + G+ + ++R YE + P N D W + +LE
Sbjct: 437 PKSKIFDQY---IHLEIELGNFD--------RVRTLYEKYLEIMPDNCDAWCKFAQLETE 485
Query: 220 VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN---YALYKEVDAGDLERTRDVYRT 276
+G R R ++E AI + W+ +I I + K++ LE+T V
Sbjct: 486 LGETVRARAIFELAIQQPNLDRPEVVWKDFIDSEIQLKQFDFVKQLYRKLLEKTNHVKVW 545
Query: 277 L-FI-FYFSFSPRMEERR 292
+ FI F S + ++++
Sbjct: 546 IGFIKFVHSIKDKQQQKQ 563
Score = 164 (62.8 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 79/361 (21%), Positives = 155/361 (42%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWM---HWMPDHEGWLSYIKF 62
R ++ ++ + + ++ Y EE+ ++ AR +FER++ H +P W+ Y +
Sbjct: 61 RQQYESLLGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHRIPTV--WIKYAEM 118
Query: 63 KLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
+++ + AR+I++R V P W + E +G AR ++E ++
Sbjct: 119 EMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQ------W 172
Query: 123 DEAEQLFVAFAKFEEMGCNCKETDRARCIY-KFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
Q + ++ KFE+ K + R I+ K+ L P + + K+ FE++ G+
Sbjct: 173 KPEPQAWNSYLKFEQ---RLKLFENTRLIFEKYILVH-PYIKT---WIKYTKFEERLGNI 225
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
E + EDG N + + + + EE+ ER R +Y+ AI +VP +
Sbjct: 226 ENARTIFQRAIEFLGEDG---N--DEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSR 280
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEE-RRI 293
K + + + ++ L + R Y + +F + +MEE
Sbjct: 281 AKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYL-KMEEINGE 339
Query: 294 FKKYIEM-ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD-ETERARAIFELA 351
+K E+ E +GN+ P + +K+ W Y W Y E+ + + ERAR+++
Sbjct: 340 IEKTREIYERSIGNLPPTNE--KKH--WK-RYIYLWINYALFEELISKDMERARSVYSEC 394
Query: 352 I 352
I
Sbjct: 395 I 395
Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 74/312 (23%), Positives = 140/312 (44%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R +E L+ + + +I +A +E ++ RAR+V+E ++I DH +++
Sbjct: 59 RKRQQYESLLGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDI----DH-RIPTVWI 113
Query: 131 AFAKFEEMGCNCKET----DRARCI----------YKFALDRI---PKGRAEDLYRKFLA 173
+A+ E N DRA C+ Y F D + P RA ++ +++
Sbjct: 114 KYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARA--IFERWMQ 171
Query: 174 FEKQ---YGDREGIEDAIA--GKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVRE 228
++ + + E + RL +E + +P TW Y + EER+GN E R
Sbjct: 172 WKPEPQAWNSYLKFEQRLKLFENTRLIFEKYILVHPY-IKTWIKYTKFEERLGNIENART 230
Query: 229 VYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM 288
+++RAI + E+ Q L+I +A ++E ++ER R +Y+ + P+
Sbjct: 231 IFQRAIEFL--GEDGNDEQ----LFIAFAKFEE-KYKEIERARVIYK----YAIDHVPKS 279
Query: 289 EERRIFKKYIEMELCLGN---IDPC-----RKLYEKYLEWSPENCYAWSKYTELEKSLDE 340
+ +F + E G+ I+ R YE+ ++ + +N W Y ++E+ E
Sbjct: 280 RAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGE 339
Query: 341 TERARAIFELAI 352
E+ R I+E +I
Sbjct: 340 IEKTREIYERSI 351
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 161/351 (45%), Positives = 229/351 (65%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
I+H RN DR VT+ PRVD+LW Y+ MEE LGN+ G RQ+FERWM W PD W +YIK
Sbjct: 122 INHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIK 181
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
+ RYNE +RAR IF+R HP + WI +A FE + G D R VY AVE L +D
Sbjct: 182 LEKRYNEFERARAIFQRFTIVHPEPRN-WIKWARFEEEYGTSDLVREVYGLAVET-LGED 239
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
+ E+LF+A+A+FE KE +RAR IYK+ALDR+P+ ++ L++ + FEKQ+GDR
Sbjct: 240 FMD-EKLFIAYARFET---KLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDR 295
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
EG+E+ I K R+QYE+ +++N NYD WFD+ RLEE+ G+ ERVR+VYERAIA +PP++
Sbjct: 296 EGVENVILAKRRVQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQ 355
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEME 301
EKR+W+RYIYLWI YAL++E++A D++R R VY T + + +++ + E
Sbjct: 356 EKRHWRRYIYLWIFYALWEEMEAKDIDRARQVY-TECLKLIPHK-KFTFAKVWLMKAQFE 413
Query: 302 LCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI 352
+ N+ RK + + P++ + Y +LE+ L E R R ++E I
Sbjct: 414 VRQLNLQAARKTLGQAIGMCPKD-KLFRGYIDLERQLFEFVRCRTLYEKQI 463
Score = 363 (132.8 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 105/367 (28%), Positives = 174/367 (47%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R ++ P + W+ YI++E+ AR IF+R+ P+ W+ + +F+
Sbjct: 160 RQVFERWMSWEPD-EGAWSAYIKLEKRYNEFERARAIFQRFTIVHPEPRNWIKWARFEEE 218
Query: 66 YNEVQRARHIFERLVQCHPYNL---SAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
Y R ++ V+ + +I +A FE K+ E +RAR +Y+ A++
Sbjct: 219 YGTSDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKYALDRLPRSKS 278
Query: 123 DEAEQLFVAFAK-F-EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ + F K F + G + R Y+ L R D++ F E+Q GD
Sbjct: 279 ITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKE--NLRNYDVWFDFARLEEQSGD 336
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYD-TWFDYIRLEERVGNQ-ERVREVYERAIANVP 238
E + D + +++ Y W Y EE +R R+VY + +P
Sbjct: 337 PERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDIDRARQVYTECLKLIP 396
Query: 239 PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYI 298
K++ + +W+ A + EV +L+ R +TL P+ ++F+ YI
Sbjct: 397 ---HKKF--TFAKVWLMKAQF-EVRQLNLQAAR---KTLGQA-IGMCPK---DKLFRGYI 443
Query: 299 EMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358
++E L CR LYEK +EW+P N +W +Y ELE+ LD+TERARAI+EL I QP LD
Sbjct: 444 DLERQLFEFVRCRTLYEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYELGIDQPTLD 503
Query: 359 LPEFLWK 365
+PE +WK
Sbjct: 504 MPELVWK 510
Score = 183 (69.5 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 78/335 (23%), Positives = 142/335 (42%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKL 64
R+ ++R + + LW YI E N+ AR + +R + +P + W Y+ +
Sbjct: 92 RSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEE 151
Query: 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE 124
+ R +FER + P + AW + E + E +RAR +++ + H E
Sbjct: 152 TLGNIPGTRQVFERWMSWEP-DEGAWSAYIKLEKRYNEFERARAIFQRFTIV-----HPE 205
Query: 125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG-RAEDLYRKFLAFEKQYGDREG 183
++ +A+FEE +D R +Y A++ + + E L+ + FE + + E
Sbjct: 206 PRN-WIKWARFEE---EYGTSDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYE- 260
Query: 184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFD--YIRLEERVGNQERVREVYERAIANVPPAE 241
+ R Y+ + + P + Y E++ G++E V V A V E
Sbjct: 261 -------RARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVI-LAKRRVQYEE 312
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYI--- 298
+ + R +W ++A +E +GD ER RDVY + RR +I
Sbjct: 313 QLKENLRNYDVWFDFARLEE-QSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYA 371
Query: 299 ---EMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
EME +ID R++Y + L+ P + ++K
Sbjct: 372 LWEEMEA--KDIDRARQVYTECLKLIPHKKFTFAK 404
Score = 169 (64.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 97/366 (26%), Positives = 159/366 (43%)
Query: 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWL---SYIKFKLRYNEVQRARHIF 76
++L+ Y R E L AR I++ + +P + +Y F+ ++ + + ++
Sbjct: 243 EKLFIAYARFETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVI 302
Query: 77 --ERLVQCHPY------NLSAWINFADFEMKMGEVDRARNVYECAV-EIFLADDHDEAEQ 127
+R VQ N W +FA E + G+ +R R+VYE A+ +I + + +
Sbjct: 303 LAKRRVQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRR 362
Query: 128 ---LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGI 184
L++ +A +EEM K+ DRAR +Y L IP + + K + Q+ R+
Sbjct: 363 YIYLWIFYALWEEM--EAKDIDRARQVYTECLKLIPHKKFT--FAKVWLMKAQFEVRQ-- 416
Query: 185 EDAIAGKMRLQYEDGVRKNPMNYDTWF-DYIRLEERVGNQERVREVYERAIANVPPAEEK 243
+ A + L G+ D F YI LE ++ R R +YE+ I P +
Sbjct: 417 LNLQAARKTLGQAIGMCPK----DKLFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNSQS 472
Query: 244 RYWQRYIYLWINYALYKEVDAG--DLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEME 301
WI YA E++ G D ER R +Y L I + M E ++K YI+ E
Sbjct: 473 ---------WIQYA---ELERGLDDTERARAIYE-LGIDQPTLD--MPEL-VWKAYIDFE 516
Query: 302 LCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSL-DETE---------------RAR 345
G + R+LYE+ L+ ++ W Y E ++ DE E RAR
Sbjct: 517 DDEGEYERERQLYERLLQ-KTDHVKVWINYARFEINVPDEEEEEEEEERPISDEAKRRAR 575
Query: 346 AIFELA 351
A+FE A
Sbjct: 576 AVFERA 581
Score = 160 (61.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 76/323 (23%), Positives = 137/323 (42%)
Query: 67 NEVQ-RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA 125
+E Q R R FE V+ + N++ W+ +A +E++ E RAR+++E A+++ +
Sbjct: 51 HEYQGRKRKEFEDYVRRNRINMNNWMRYAAWELEQKEFRRARSIFERALDV-----DSTS 105
Query: 126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE 185
L++ + + E N + AR + A+ +P R + L+ K++ E+ G+ G
Sbjct: 106 VPLWIRYIESEMRNRNI---NHARNLLDRAVTILP--RVDKLWYKYVYMEETLGNIPGTR 160
Query: 186 DAIAGKMRLQYEDG-------VRKNPMNYD-----------------TWFDYIRLEERVG 221
M + ++G + K ++ W + R EE G
Sbjct: 161 QVFERWMSWEPDEGAWSAYIKLEKRYNEFERARAIFQRFTIVHPEPRNWIKWARFEEEYG 220
Query: 222 NQERVREVYERAIANVPP--AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI 279
+ VREVY A+ + +EK L+I YA + E + ER R +Y+
Sbjct: 221 TSDLVREVYGLAVETLGEDFMDEK--------LFIAYARF-ETKLKEYERARAIYK---- 267
Query: 280 FYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKL--------YEKYLEWSPENCYAWSKY 331
+ PR + + K Y E G+ + + YE+ L+ + N W +
Sbjct: 268 YALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDF 327
Query: 332 TELEKSLDETERARAIFELAIAQ 354
LE+ + ER R ++E AIAQ
Sbjct: 328 ARLEEQSGDPERVRDVYERAIAQ 350
Score = 155 (59.6 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 77/338 (22%), Positives = 139/338 (41%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQ 81
W Y E AR IFER + W+ YI+ ++R + AR++ +R V
Sbjct: 75 WMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVT 134
Query: 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN 141
P W + E +G + R V+E +++ + DE + A+ K E+
Sbjct: 135 ILPRVDKLWYKYVYMEETLGNIPGTRQVFER----WMSWEPDEGA--WSAYIKLEK---R 185
Query: 142 CKETDRARCIY-KFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV 200
E +RAR I+ +F + P+ R + K+ FE++YG + + + + ED
Sbjct: 186 YNEFERARAIFQRFTIVH-PEPRN---WIKWARFEEEYGTSDLVREVYGLAVETLGEDF- 240
Query: 201 RKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYK 260
M+ + Y R E ++ ER R +Y+ A+ +P ++ + Y + +
Sbjct: 241 ----MDEKLFIAYARFETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDRE 296
Query: 261 EVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIE--MELCLGNIDPCR 311
V+ L + R Y + +F F+ R+EE+ + + E + I P +
Sbjct: 297 GVENVILAKRRVQYEEQLKENLRNYDVWFDFA-RLEEQSGDPERVRDVYERAIAQIPPSQ 355
Query: 312 KLYEKYLEWSPENCYAWSKYTELEK-SLDETERARAIF 348
EK W Y W Y E+ + +RAR ++
Sbjct: 356 ---EKR-HWR-RYIYLWIFYALWEEMEAKDIDRARQVY 388
Score = 152 (58.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 47/169 (27%), Positives = 86/169 (50%)
Query: 176 KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIA 235
+++ D E + + G+ R ++ED VR+N +N + W Y E R R ++ERA+
Sbjct: 42 QRFADLEELHE-YQGRKRKEFEDYVRRNRINMNNWMRYAAWELEQKEFRRARSIFERAL- 99
Query: 236 NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERRIF 294
+V + LWI Y + E+ ++ R++ R + I PR++ +++
Sbjct: 100 DVDSTS--------VPLWIRY-IESEMRNRNINHARNLLDRAVTIL-----PRVD--KLW 143
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSP-ENCY-AWSK----YTELEKS 337
KY+ ME LGNI R+++E+++ W P E + A+ K Y E E++
Sbjct: 144 YKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFERA 192
Score = 152 (58.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 76/361 (21%), Positives = 149/361 (41%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIF----ERWMHWMPDHEGWLS 58
+ R + R + P + W + R EE G R+++ E D + +++
Sbjct: 190 ERARAIFQRFTIVHPE-PRNWIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKLFIA 248
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN--FADFEMKMGEVDRARNVYECAVEI 116
Y +F+ + E +RAR I++ + P + S ++ + FE + G+ + NV +
Sbjct: 249 YARFETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKRRV 308
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
+ E + + + F + + +R R +Y+ A+ +IP + + +R+++
Sbjct: 309 QYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWI 368
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERVREVYER 232
Y E +E + R Y + ++ P T W + E R N + R+ +
Sbjct: 369 FYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQ 428
Query: 233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERR 292
AI P + + ++ YI L L++ V RTL+ ++P +
Sbjct: 429 AIGMCP---KDKLFRGYIDL--ERQLFEFVRC----------RTLYEKQIEWNPSNSQSW 473
Query: 293 IFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETERARAIF 348
I +Y E+E L + + R +YE ++ PE W Y + E E ER R ++
Sbjct: 474 I--QYAELERGLDDTERARAIYELGIDQPTLDMPE--LVWKAYIDFEDDEGEYERERQLY 529
Query: 349 E 349
E
Sbjct: 530 E 530
Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 50/192 (26%), Positives = 89/192 (46%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLSYIK 61
R +++ + +P Q W Y +E L + AR I+E + MP+ W +YI
Sbjct: 456 RTLYEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYELGIDQPTLDMPELV-WKAYID 514
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD----------------R 105
F+ E +R R ++ERL+Q + + WIN+A FE+ + + + R
Sbjct: 515 FEDDEGEYERERQLYERLLQKTDH-VKVWINYARFEINVPDEEEEEEEEERPISDEAKRR 573
Query: 106 ARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA 164
AR V+E A +F + +E +L A+ FE + ++ D+ I K R+ K R
Sbjct: 574 ARAVFERAHRVFKEKELKEERVELLNAWRAFEHTHGSPEDIDK---IEKQMPRRVKKRRK 630
Query: 165 --EDLYRKFLAF 174
+D Y +++ +
Sbjct: 631 LDDDRYEEYMDY 642
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 150/354 (42%), Positives = 218/354 (61%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
I+H RN +DR +T+ PR Q W Y MEE + N+ GARQIFERW+ W P + W +YI
Sbjct: 136 INHARNVFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQAWQTYIN 195
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+LRY E+ RAR +++R + H N+ WI +A FE + G + AR YE A+E F +D
Sbjct: 196 FELRYKEIDRARSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKAMEYFGEED 255
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
+E + VAFA FEE KE +RAR I+K+ LD +P R E++++ + EK++G+R
Sbjct: 256 INET--VLVAFALFEERQ---KEHERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFGER 310
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRL-EERVGNQERVREVYERAIANVPPA 240
GIED I K + QYE V +N NYD WFDY+RL E ++E V +VYERAIAN+PP
Sbjct: 311 VGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAIANIPPH 370
Query: 241 ---EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF--IFYFSFSPRMEERRIFK 295
+EKRYW+RYIYLWINYALY+E+ A D +R R VY+ I + +F+ +++
Sbjct: 371 SYFQEKRYWRRYIYLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFT----FAKVWI 426
Query: 296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
+ E+ +++ RK+ + P++ + Y +LE L E +R R ++E
Sbjct: 427 MFAHFEIRQLDLNAARKIMGVAIGKCPKD-KLFRAYIDLELQLREFDRCRKLYE 479
Score = 377 (137.8 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 109/376 (28%), Positives = 181/376 (48%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYI 60
I R ++R + P +Q W YI E + AR +++R++H + + W+ Y
Sbjct: 170 IPGARQIFERWIEWEPP-EQAWQTYINFELRYKEIDRARSVYQRFLHVHGINVQNWIKYA 228
Query: 61 KFKLRYNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF 117
KF+ R + AR +E+ ++ N + + FA FE + E +RAR +++ ++
Sbjct: 229 KFEERNGYIGNARAAYEKAMEYFGEEDINETVLVAFALFEERQKEHERARGIFKYGLDNL 288
Query: 118 LADDHDEAEQLFVAFAK-F-EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF- 174
++ +E + + K F E +G + + Y+ ++ G D + +L
Sbjct: 289 PSNRTEEIFKHYTQHEKKFGERVGIEDVIISKRKTQYEKMVEE--NGYNYDAWFDYLRLL 346
Query: 175 EKQYGDREGIED----AIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQ-ERVREV 229
E + DRE +ED AIA Y R W +Y EE V +R R+V
Sbjct: 347 ENEETDREEVEDVYERAIANIPPHSYFQEKRYWRRYIYLWINYALYEELVAKDFDRARQV 406
Query: 230 YERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME 289
Y+ I +P K + + +WI +A + E+ DL R + +
Sbjct: 407 YKACIDIIP---HKTF--TFAKVWIMFAHF-EIRQLDLNAARKIMGVAI-------GKCP 453
Query: 290 ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
+ ++F+ YI++EL L D CRKLYEK+LE SPE+ W K+ ELE L +T+R+RA+F
Sbjct: 454 KDKLFRAYIDLELQLREFDRCRKLYEKFLESSPESSQTWIKFAELETLLGDTDRSRAVFT 513
Query: 350 LAIAQPILDLPEFLWK 365
+A+ QP LD+PE LWK
Sbjct: 514 IAVQQPALDMPELLWK 529
Score = 231 (86.4 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 90/369 (24%), Positives = 157/369 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYI 60
I R+ ++R + + R +W Y ME + AR +F+R + MP + WL Y
Sbjct: 102 IQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLKYS 161
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ + AR IFER ++ P AW + +FE++ E+DRAR+VY+ + +
Sbjct: 162 YMEEVIENIPGARQIFERWIEWEPPE-QAWQTYINFELRYKEIDRARSVYQRFLHV---- 216
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
H Q ++ +AKFEE AR Y+ A++ + ED+ L + +
Sbjct: 217 -HGINVQNWIKYAKFEERN---GYIGNARAAYEKAMEYFGE---EDINETVLVAFALFEE 269
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
R+ + G + D + N + + Y + E++ G + + +V I+
Sbjct: 270 RQKEHERARGIFKYGL-DNLPSNRTE-EIFKHYTQHEKKFGERVGIEDVI---ISKRKTQ 324
Query: 241 EEKRYWQR-YIY-LWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYI 298
EK + Y Y W +Y E + D E DVY S +E+R +++YI
Sbjct: 325 YEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAIANIPPHS-YFQEKRYWRRYI 383
Query: 299 EM--------ELCLGNIDPCRKLYEKYLEWSPENCYA----WSKYTELE-KSLDETERAR 345
+ EL + D R++Y+ ++ P + W + E + LD AR
Sbjct: 384 YLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLD-LNAAR 442
Query: 346 AIFELAIAQ 354
I +AI +
Sbjct: 443 KIMGVAIGK 451
Score = 210 (79.0 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 75/343 (21%), Positives = 143/343 (41%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG---WLSYIKFKLRYNEVQRARHIFERL 79
W Y + EE++G + AR +FER + DH WL Y + ++R ++ AR++F+R
Sbjct: 89 WIKYGKWEESIGEIQRARSVFERALD--VDHRSISIWLQYAEMEMRCKQINHARNVFDRA 146
Query: 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139
+ P + W+ ++ E + + AR ++E +E + EQ + + FE
Sbjct: 147 ITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIE------WEPPEQAWQTYINFE--- 197
Query: 140 CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDG 199
KE DRAR +Y+ L G + K+ FE++ G A M E+
Sbjct: 198 LRYKEIDRARSVYQRFLH--VHGINVQNWIKYAKFEERNGYIGNARAAYEKAMEYFGEED 255
Query: 200 VRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259
+ + + + EER ER R +++ + N+P + ++ Y +
Sbjct: 256 INETVL-----VAFALFEERQKEHERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFGER 310
Query: 260 KEVDAGDLERTRDVYRTL-------FIFYFSFSPRMEERRIFKKYIE--MELCLGNIDPC 310
++ + + + Y + + +F + +E ++ +E E + NI P
Sbjct: 311 VGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAIANIPPH 370
Query: 311 RKLYEKYLEWSPENCYAWSKYTELEKSL-DETERARAIFELAI 352
EK W Y W Y E+ + + +RAR +++ I
Sbjct: 371 SYFQEKRY-WR-RYIYLWINYALYEELVAKDFDRARQVYKACI 411
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 78/325 (24%), Positives = 137/325 (42%)
Query: 16 SPRVDQLWNNYIRMEENLGNVAGARQIF--ERWMHW--MPDHEG-----WLSYIKFKLRY 66
S R ++++ +Y + E+ G G + +R + M + G W Y++ L
Sbjct: 290 SNRTEEIFKHYTQHEKKFGERVGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRL-LEN 348
Query: 67 NEVQR--ARHIFERLVQC---HPY---------NLSAWINFADFEMKMG-EVDRARNVYE 111
E R ++ER + H Y + WIN+A +E + + DRAR VY+
Sbjct: 349 EETDREEVEDVYERAIANIPPHSYFQEKRYWRRYIYLWINYALYEELVAKDFDRARQVYK 408
Query: 112 CAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF 171
++I A+ +++ FA FE + + AR I A+ + PK + L+R +
Sbjct: 409 ACIDIIPHKTFTFAK-VWIMFAHFE---IRQLDLNAARKIMGVAIGKCPKDK---LFRAY 461
Query: 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYE 231
+ E Q RE + R YE + +P + TW + LE +G+ +R R V+
Sbjct: 462 IDLELQL--RE------FDRCRKLYEKFLESSPESSQTWIKFAELETLLGDTDRSRAVFT 513
Query: 232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEER 291
A+ + W+ YI E+ + E+ RD+Y TL R
Sbjct: 514 IAVQQPALDMPELLWKAYIDF--------EIACEEHEKARDLYETLL-------QRTNHI 558
Query: 292 RIFKKYIEMELCLGNIDPCRKLYEK 316
+++ E E +GN + RK +E+
Sbjct: 559 KVWISMAEFEQTIGNFEGARKAFER 583
Score = 167 (63.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 44/133 (33%), Positives = 69/133 (51%)
Query: 191 KMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI 250
K R ++EDG+RKN M W Y + EE +G +R R V+ERA+ +V R I
Sbjct: 70 KKRKEFEDGIRKNRMQLANWIKYGKWEESIGEIQRARSVFERAL-DVD--------HRSI 120
Query: 251 YLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDP 309
+W+ YA E+ + R+V+ R + I PR + + KY ME + NI
Sbjct: 121 SIWLQYA-EMEMRCKQINHARNVFDRAITIM-----PRAMQ--FWLKYSYMEEVIENIPG 172
Query: 310 CRKLYEKYLEWSP 322
R+++E+++EW P
Sbjct: 173 ARQIFERWIEWEP 185
Score = 145 (56.1 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 39/149 (26%), Positives = 73/149 (48%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW----MPDHEGWLS 58
D R +++ + SP Q W + +E LG+ +R +F + MP+ W +
Sbjct: 472 DRCRKLYEKFLESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPELL-WKA 530
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL 118
YI F++ E ++AR ++E L+Q ++ WI+ A+FE +G + AR +E A +
Sbjct: 531 YIDFEIACEEHEKARDLYETLLQ-RTNHIKVWISMAEFEQTIGNFEGARKAFERANQSL- 588
Query: 119 ADDHDEAEQLFVAFAKFEEMGCNCKETDR 147
++ E E+ + ++E C K D+
Sbjct: 589 --ENAEKEERLMLLEAWKE--CETKSGDQ 613
Score = 145 (56.1 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 83/367 (22%), Positives = 151/367 (41%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHE----GWL 57
ID R+ + R + + Q W Y + EE G + AR +E+ M + + + +
Sbjct: 203 IDRARSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKAMEYFGEEDINETVLV 262
Query: 58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI--NFADFEMKMGEVDRARNVYECAVE 115
++ F+ R E +RAR IF+ + P N + I ++ E K GE +V +
Sbjct: 263 AFALFEERQKEHERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFGERVGIEDVIISKRK 322
Query: 116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARC--IYKFALDRIPKGR--AEDLY-RK 170
+E + A+ + + N +ETDR +Y+ A+ IP E Y R+
Sbjct: 323 TQYEKMVEENGYNYDAWFDYLRLLEN-EETDREEVEDVYERAIANIPPHSYFQEKRYWRR 381
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQYE---DGVRKNPMNY-DTWFDYIRLEERVGNQERV 226
++ Y E + + R Y+ D + + W + E R +
Sbjct: 382 YIYLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAA 441
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R++ AI P + + ++ YI L E+ + +R R +Y + SP
Sbjct: 442 RKIMGVAIGKCP---KDKLFRAYIDL--------ELQLREFDRCRKLYEK----FLESSP 486
Query: 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLDETE 342
E + + K+ E+E LG+ D R ++ ++ PE W Y + E + +E E
Sbjct: 487 --ESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPE--LLWKAYIDFEIACEEHE 542
Query: 343 RARAIFE 349
+AR ++E
Sbjct: 543 KARDLYE 549
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 142/348 (40%), Positives = 212/348 (60%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
I+H RN +DR VT PRVD+LW Y+ MEE LGN+ G RQ+FERW+ W PD W+SYI+
Sbjct: 120 INHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIR 179
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
+ RY+E +RAR I+ER V HP ++ W+ +A FE + G R VY A++ L +
Sbjct: 180 MERRYHENERARGIYERFVVVHP-EVTNWLRWARFEEECGNAANVRQVYLAAIDA-LGQE 237
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
E+ F+AFAKFE KE +RAR I+K+A+D +P+ ++ +LY+++ FEKQ+GD
Sbjct: 238 FLN-ERFFIAFAKFE---IRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDH 293
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
G+E + K RLQYE ++ +P +YDTW D ++LEE G+ +RE YE+AIA VP
Sbjct: 294 LGVESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVV 353
Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEME 301
EK W+RY+Y+W+NY L++E+D D++R R VY+ + +++ Y E
Sbjct: 354 EKNAWRRYVYIWLNYCLFEEIDVKDVDRARKVYQEALKLIPH--KKFTFAKLWLMYAMFE 411
Query: 302 LCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
L ID RK + L P+ + Y E E ++ + +R R ++E
Sbjct: 412 LRQRKIDVARKTLGRALGMCPKP-KLFRGYIEFEDAIKQFDRCRILYE 458
Score = 369 (135.0 bits), Expect = 3.0e-33, P = 3.0e-33
Identities = 109/370 (29%), Positives = 176/370 (47%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + P + W +YIRME AR I+ER++ P+ WL + +F+
Sbjct: 158 RQVFERWLKWEPD-ENCWMSYIRMERRYHENERARGIYERFVVVHPEVTNWLRWARFEEE 216
Query: 66 YNEVQRARHIFERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122
R ++ + N +I FA FE++ E +RAR +++ A++
Sbjct: 217 CGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAIDFMPRSKS 276
Query: 123 DEAEQLFVAFAK-F-EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
E + + F K F + +G D+ R Y+ L P D + L E+ GD
Sbjct: 277 MELYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSPYDY--DTWLDLLKLEESAGD 334
Query: 181 ----REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERAIA 235
RE E AIA + ++ R+ Y W +Y EE V + +R R+VY+ A+
Sbjct: 335 INTIRETYEKAIAKVPEVVEKNAWRRYV--Y-IWLNYCLFEEIDVKDVDRARKVYQEALK 391
Query: 236 NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFK 295
+P K++ + LW+ YA++ E+ +R DV R P+ ++F+
Sbjct: 392 LIP---HKKF--TFAKLWLMYAMF-ELR----QRKIDVARKTLGRALGMCPKP---KLFR 438
Query: 296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355
YIE E + D CR LYEK++ + PE C W Y LE L +++RARA++ LA+ QP
Sbjct: 439 GYIEFEDAIKQFDRCRILYEKWILYDPEACAPWLGYAALETKLGDSDRARALYNLAVNQP 498
Query: 356 ILDLPEFLWK 365
IL+ PE +WK
Sbjct: 499 ILETPELVWK 508
Score = 194 (73.4 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 79/336 (23%), Positives = 147/336 (43%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKL 64
R+ ++R + + LW YI E N+ AR +F+R + +P + W Y+ +
Sbjct: 90 RSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEE 149
Query: 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE 124
+ R +FER ++ P + + W+++ E + E +RAR +YE V + H E
Sbjct: 150 MLGNITGCRQVFERWLKWEP-DENCWMSYIRMERRYHENERARGIYERFVVV-----HPE 203
Query: 125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA-EDLYRKFLAFE---KQYGD 180
++ +A+FEE C R +Y A+D + + E + F FE K+Y
Sbjct: 204 VTN-WLRWARFEE---ECGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIRQKEYER 259
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWF-DYIRLEERVGNQERVREVYERAIANVPP 239
I M + K +++ F D++ +E V ++ R++ YE+ + + P
Sbjct: 260 ARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRLQ--YEKLLKDSP- 316
Query: 240 AEEKRYWQRYIY-LWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERR---IFK 295
Y Y W++ L E AGD+ R+ Y + RR I+
Sbjct: 317 ---------YDYDTWLDL-LKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWL 366
Query: 296 KY-IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
Y + E+ + ++D RK+Y++ L+ P + ++K
Sbjct: 367 NYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAK 402
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 73/318 (22%), Positives = 137/318 (43%)
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130
R R FE ++ + + W+ + +E+ E RAR+V+E A+++ + ++
Sbjct: 54 RKRKEFEDAIRRNRLAMGHWMRYGQWELDQKEFARARSVFERALDV---------DSTYI 104
Query: 131 A-FAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIA 189
+ K+ E + + AR ++ A+ ++P R + L+ K++ E+ G+ G
Sbjct: 105 PLWLKYIECEMKNRNINHARNLFDRAVTQLP--RVDKLWYKYVYMEEMLGNITGCRQVFE 162
Query: 190 G---------------KMRLQYEDGVRKNPMNYD----------TWFDYIRLEERVGNQE 224
+M +Y + R + Y+ W + R EE GN
Sbjct: 163 RWLKWEPDENCWMSYIRMERRYHENERARGI-YERFVVVHPEVTNWLRWARFEEECGNAA 221
Query: 225 RVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSF 284
VR+VY +A + ++ +R+ +I +A + E+ + ER R T+F + F
Sbjct: 222 NVRQVY---LAAIDALGQEFLNERF---FIAFAKF-EIRQKEYERAR----TIFKYAIDF 270
Query: 285 SPRMEERRIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEK 336
PR + ++K+Y E G+ +D R YEK L+ SP + W +LE+
Sbjct: 271 MPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEE 330
Query: 337 SLDETERARAIFELAIAQ 354
S + R +E AIA+
Sbjct: 331 SAGDINTIRETYEKAIAK 348
Score = 169 (64.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 73/299 (24%), Positives = 134/299 (44%)
Query: 3 DHGRNAWDRVVTLSPRVD--QLWNNYIRMEENLGNVAGA-------RQI-FERWMHWMP- 51
+ R + + PR +L+ Y E+ G+ G R++ +E+ + P
Sbjct: 258 ERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSPY 317
Query: 52 DHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA---------WINFADFE-MKMG 101
D++ WL +K + ++ R +E+ + P + W+N+ FE + +
Sbjct: 318 DYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYCLFEEIDVK 377
Query: 102 EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161
+VDRAR VY+ A+++ A+ L++ +A FE ++ D AR AL PK
Sbjct: 378 DVDRARKVYQEALKLIPHKKFTFAK-LWLMYAMFE---LRQRKIDVARKTLGRALGMCPK 433
Query: 162 GRAEDLYRKFLAFEKQYGDREGIEDAIA--GKMRLQYEDGVRKNPMNYDTWFDYIRLEER 219
+ L+R ++ FE DAI + R+ YE + +P W Y LE +
Sbjct: 434 PK---LFRGYIEFE----------DAIKQFDRCRILYEKWILYDPEACAPWLGYAALETK 480
Query: 220 VGNQERVREVYERAIANVPPAEEKRY-WQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277
+G+ +R R +Y A+ N P E W+ YI ++ ++E++ G + R +Y+ L
Sbjct: 481 LGDSDRARALYNLAV-NQPILETPELVWKAYI----DFE-FEEMEYG---KARSIYQQL 530
Score = 166 (63.5 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
D E +++ G+ R ++ED +R+N + W Y + E R R V+ERA+ +V
Sbjct: 44 DLEELQE-FQGRKRKEFEDAIRRNRLAMGHWMRYGQWELDQKEFARARSVFERAL-DVDS 101
Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE 299
YI LW+ Y ++ R + R LF + PR++ +++ KY+
Sbjct: 102 T--------YIPLWLKY-----IECEMKNRNINHARNLFDRAVTQLPRVD--KLWYKYVY 146
Query: 300 MELCLGNIDPCRKLYEKYLEWSP-ENCY 326
ME LGNI CR+++E++L+W P ENC+
Sbjct: 147 MEEMLGNITGCRQVFERWLKWEPDENCW 174
Score = 160 (61.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 86/366 (23%), Positives = 157/366 (42%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP----DHEGWLS 58
+ R ++R V + P V W + R EE GN A RQ++ + + + +++
Sbjct: 188 ERARGIYERFVVVHPEVTN-WLRWARFEEECGNAANVRQVYLAAIDALGQEFLNERFFIA 246
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI--NFADFEMKMGE---VDRA-RNVYEC 112
+ KF++R E +RAR IF+ + P + S + + FE + G+ V+ +
Sbjct: 247 FAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRL 306
Query: 113 AVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL 172
E L D + + ++ K EE + + + R Y+ A+ ++P+ ++ +R+++
Sbjct: 307 QYEKLLKDSPYDYDT-WLDLLKLEE---SAGDINTIRETYEKAIAKVPEVVEKNAWRRYV 362
Query: 173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERVRE 228
Y E I+ + R Y++ ++ P T W Y E R + R+
Sbjct: 363 YIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARK 422
Query: 229 VYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM 288
RA+ P + + ++ YI A+ K+ D R R +Y +I Y P
Sbjct: 423 TLGRALGMCP---KPKLFRGYIEF--EDAI-KQFD-----RCRILYEK-WILY---DP-- 465
Query: 289 EERRIFKKYIEMELCLGNIDPCRKLY-----EKYLEWSPENCYAWSKYTELEKSLDETER 343
E + Y +E LG+ D R LY + LE +PE W Y + E E +
Sbjct: 466 EACAPWLGYAALETKLGDSDRARALYNLAVNQPILE-TPE--LVWKAYIDFEFEEMEYGK 522
Query: 344 ARAIFE 349
AR+I++
Sbjct: 523 ARSIYQ 528
Score = 155 (59.6 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 84/348 (24%), Positives = 147/348 (42%)
Query: 39 ARQIFERWMHWMP---DHEGWLSYIKFKLRYNE--------VQRARHIFERLVQCHPYNL 87
AR IF+ + +MP E + Y F+ ++ + + + R +E+L++ PY+
Sbjct: 260 ARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSPYDY 319
Query: 88 SAWINFADFEMKMGEVDRARNVYECAV----EIFLADDHDEAEQLFVAFAKFEEMGCNCK 143
W++ E G+++ R YE A+ E+ + +++ + FEE+ + K
Sbjct: 320 DTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYCLFEEI--DVK 377
Query: 144 ETDRARCIYKFALDRIP--KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR 201
+ DRAR +Y+ AL IP K L+ + FE + + I+ +A K L G+
Sbjct: 378 DVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELR---QRKID--VARKT-LGRALGMC 431
Query: 202 KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKE 261
P + YI E+ + +R R +YE+ I P A W+ YA E
Sbjct: 432 PKPKLFR---GYIEFEDAIKQFDRCRILYEKWILYDPEACAP---------WLGYAAL-E 478
Query: 262 VDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS 321
GD +R R +Y +P + ++K YI+ E R +Y++ L +
Sbjct: 479 TKLGDSDRARALYNLAVNQPILETPEL----VWKAYIDFEFEEMEYGKARSIYQQLLRTA 534
Query: 322 PENCYAWSKYTELEKSL--DETE--------------RARAIFELAIA 353
P + W + E + D+ E RAR +FE A+A
Sbjct: 535 P-HVKVWISFANFEIAHLEDDDEEPPNEEVASPTAVVRARNVFENALA 581
Score = 149 (57.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 86/345 (24%), Positives = 150/345 (43%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEE-NLGNVAGARQIFERWMHWMPDHEG-----WLSY 59
+NAW R V +W NY EE ++ +V AR++++ + +P + WL Y
Sbjct: 355 KNAWRRYV-------YIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMY 407
Query: 60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA 119
F+LR ++ AR R + P + + +FE + + DR R +YE + L
Sbjct: 408 AMFELRQRKIDVARKTLGRALGMCP-KPKLFRGYIEFEDAIKQFDRCRILYE---KWILY 463
Query: 120 DDHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178
D EA ++ +A E ++G ++DRAR +Y A+++ E +++ ++ FE
Sbjct: 464 DP--EACAPWLGYAALETKLG----DSDRARALYNLAVNQPILETPELVWKAYIDFE--- 514
Query: 179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW-----FDYIRLE---ERVGNQE------ 224
E+ GK R Y+ +R P + W F+ LE E N+E
Sbjct: 515 -----FEEMEYGKARSIYQQLLRTAP-HVKVWISFANFEIAHLEDDDEEPPNEEVASPTA 568
Query: 225 --RVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA-GDLERTRDVYRTLFIFY 281
R R V+E A+A++ K +R + L +K+ +A E TR +L
Sbjct: 569 VVRARNVFENALAHLRQQGLKE--ERVVLL----EAWKQFEAMHGTEDTRKHVSSLMPQV 622
Query: 282 FSFSPRMEERRIFKKYIEM---ELCLGNIDPCRKLYEKYLEWSPE 323
R+E+ F++Y++ + D RK+ E +W E
Sbjct: 623 VKKRRRLEDGS-FEEYLDYLFPDTATDQGDKMRKMLELSRKWKEE 666
Score = 149 (57.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 65/336 (19%), Positives = 142/336 (42%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQ 81
W Y + E + A AR +FER + + WL YI+ +++ + AR++F+R V
Sbjct: 73 WMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVT 132
Query: 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN 141
P W + E +G + R V+E +L + DE ++++ + E
Sbjct: 133 QLPRVDKLWYKYVYMEEMLGNITGCRQVFER----WLKWEPDE--NCWMSYIRMER---R 183
Query: 142 CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR 201
E +RAR IY+ + P+ + ++ FE++ G+ + + D +
Sbjct: 184 YHENERARGIYERFVVVHPEVTN---WLRWARFEEECGNAANVRQVYLAAI-----DALG 235
Query: 202 KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKE 261
+ +N + + + E R ER R +++ AI +P ++ ++ Y + + +
Sbjct: 236 QEFLNERFFIAFAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLG 295
Query: 262 VDAGDLERTRDVYRTLFIFY-FSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLE- 319
V++ L++ R Y L + + ++ ++ + ++ + + +E
Sbjct: 296 VESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEK 355
Query: 320 --WSPENCYAWSKYTELEK-SLDETERARAIFELAI 352
W Y W Y E+ + + +RAR +++ A+
Sbjct: 356 NAWR-RYVYIWLNYCLFEEIDVKDVDRARKVYQEAL 390
>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 128/354 (36%), Positives = 199/354 (56%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
I+ RN +RVV L P + W Y +EE L N AR I+ERW+ + D +L YI
Sbjct: 121 INSARNLLERVVLLLPLENIFWKKYAHLEEILNNYVNARNIYERWIKFKIDESSFLCYIY 180
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+ R NE+ + R IFERL+ P L + F FE K + RAR YE +E+ +
Sbjct: 181 FEERCNEINKCREIFERLIVSIP-KLECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCY 239
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
DE ++ F FEE E +R + IY AL +PK ++E LY+ FL F+K+Y ++
Sbjct: 240 IDE--NFYIHFCNFEE---EQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANK 294
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGN--QE----RVREVYERAI 234
+ + +++ K R+ YED ++KN +YD WF+YI+LEE + N +E R+R++YERAI
Sbjct: 295 DELHESLLIKERIFYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAI 354
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ +P K++W+RYIYLWINY++++E+ A +++R RDVY + S+ ++IF
Sbjct: 355 SIIPIISSKKFWKRYIYLWINYSIFEELYAQNIQRARDVYNNIIKILSSYE--FTFKKIF 412
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIF 348
Y EL N++ R ++ L+ P N + K+ E E L R ++
Sbjct: 413 ILYATFELRQLNVNKARSIFNNALQTIP-NEKIFEKFCEFELKLGNIRECRNVY 465
Score = 336 (123.3 bits), Expect = 1.8e-29, P = 1.8e-29
Identities = 107/379 (28%), Positives = 184/379 (48%)
Query: 4 HGRNAWDRVVTLSPRVDQL-WNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKF 62
+ RN ++R + ++D+ + YI EE + R+IFER + +P E + +IKF
Sbjct: 157 NARNIYERWIKF--KIDESSFLCYIYFEERCNEINKCREIFERLIVSIPKLECFYKFIKF 214
Query: 63 KLRYNEVQRARHIFERLVQCHP--Y-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLA 119
+ +Y + RAR +E+ ++ P Y + + +I+F +FE + E +R + +Y A++I
Sbjct: 215 EKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERCKKIYIEALKIL-- 272
Query: 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK--FALDRIPKGRAE-DLYRKFLAFEK 176
+++E L+ F +F++ N E + I + F D + K + + D++ ++ E+
Sbjct: 273 -PKNKSELLYKNFLQFQKKYANKDELHESLLIKERIFYEDELKKNKNDYDIWFNYIKLEE 331
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPM--------NYD-TWFDYIRLEERVG-NQERV 226
+ E I ++R YE + P+ Y W +Y EE N +R
Sbjct: 332 SNINNINKEKCII-RIRDLYERAISIIPIISSKKFWKRYIYLWINYSIFEELYAQNIQRA 390
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R+VY I + Y + ++I YA + E+ ++ + R ++
Sbjct: 391 RDVYNNIIKIL-----SSYEFTFKKIFILYATF-ELRQLNVNKARSIFNNAL-------Q 437
Query: 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARA 346
+ +IF+K+ E EL LGNI CR +Y KY+E P N AW E SLDE ERAR
Sbjct: 438 TIPNEKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSLDEVERARQ 497
Query: 347 IFELAIAQPILDLPEFLWK 365
I E+AI + LPE +WK
Sbjct: 498 IAEIAINLDDMKLPELIWK 516
Score = 192 (72.6 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 78/292 (26%), Positives = 129/292 (44%)
Query: 52 DHEGWLSYIKFK-LRYNEVQ------RARHIFERLVQCHPYNLSA---------WINFAD 95
D++ W +YIK + N + R R ++ER + P S WIN++
Sbjct: 319 DYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWKRYIYLWINYSI 378
Query: 96 FEMKMGE-VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF 154
FE + + RAR+VY ++I L+ +++F+ +A FE N ++AR I+
Sbjct: 379 FEELYAQNIQRARDVYNNIIKI-LSSYEFTFKKIFILYATFELRQLN---VNKARSIFNN 434
Query: 155 ALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYI 214
AL IP E ++ KF FE + G+ I + R Y V P N W I
Sbjct: 435 ALQTIPN---EKIFEKFCEFELKLGN---IREC-----RNVYAKYVEAFPFNSKAWISMI 483
Query: 215 RLEERVGNQERVREVYERAIANVPPAE-EKRYWQRYIYLWINYALYKEVDAGDLERTRDV 273
E + ER R++ E AI N+ + + W+ YI + IN Y + R +
Sbjct: 484 NFELSLDEVERARQIAEIAI-NLDDMKLPELIWKNYIDMEINLQEY--------DNARKL 534
Query: 274 YRTLFIFYFSFSPRMEERRIFKKYIEME-LCLGNIDPCRKLYEKYLEWSPEN 324
Y L + +++K Y E + L +I+ CRK+ E+ +E+ +N
Sbjct: 535 YDRLLNI-------TQHYKVYKSYAEFTYIYLDDIEMCRKILEEGIEFCKKN 579
Score = 190 (71.9 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 78/370 (21%), Positives = 163/370 (44%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYI 60
I+ R+ ++R + + LW YI +E N+ AR + ER + +P ++ W Y
Sbjct: 87 IERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIFWKKYA 146
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ N AR+I+ER ++ + S+++ + FE + E+++ R ++E + ++
Sbjct: 147 HLEEILNNYVNARNIYERWIK-FKIDESSFLCYIYFEERCNEINKCREIFE---RLIVSI 202
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA-EDLYRKFLAFEKQYG 179
E F F KFE+ K RAR Y+ ++ +P E+ Y F FE++
Sbjct: 203 PKLEC---FYKFIKFEK---KYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQN 256
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVRE---VYERAIAN 236
+ E + +++ ++ K+ + Y ++++ +++ N++ + E + ER
Sbjct: 257 EYERCKKIYIEALKILPKN---KSELLYK---NFLQFQKKYANKDELHESLLIKERIFYE 310
Query: 237 VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT--LFIFYFSFSPRMEERRIF 294
+ K + +W NY +E + ++ + + + R L+ S P + ++ +
Sbjct: 311 DELKKNKNDYD----IWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFW 366
Query: 295 KKYIEM--------ELCLGNIDPCRKLYEKYLEWSPENCYAWSK----YTELEKSLDETE 342
K+YI + EL NI R +Y ++ + + K Y E
Sbjct: 367 KRYIYLWINYSIFEELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVN 426
Query: 343 RARAIFELAI 352
+AR+IF A+
Sbjct: 427 KARSIFNNAL 436
Score = 174 (66.3 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 57/242 (23%), Positives = 115/242 (47%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYI 60
++ R+ ++ + P ++++ + E LGN+ R ++ +++ P + + W+S I
Sbjct: 425 VNKARSIFNNALQTIPN-EKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMI 483
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSA--WINFADFEMKMGEVDRARNVYECAVEIFL 118
F+L +EV+RAR I E + L W N+ D E+ + E D AR +Y+ + I
Sbjct: 484 NFELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEINLQEYDNARKLYDRLLNI-- 541
Query: 119 ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED---LYRKFLA-F 174
H +++ ++A+F + + + + R I + ++ K + + FL
Sbjct: 542 -TQH---YKVYKSYAEFTYIYLD--DIEMCRKILEEGIEFCKKNELINERCILLNFLCDI 595
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD-YIR-LEERVGNQERVREVYER 232
EK YGD+E I+ + + + + KN N D + YI + GNQ + ++ E+
Sbjct: 596 EKDYGDKEIIDKTLKRLPKKVKKRKIIKNNDNDDEIIEEYITYVFPDDGNQSQNMKILEK 655
Query: 233 AI 234
A+
Sbjct: 656 AL 657
Score = 174 (66.3 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 76/370 (20%), Positives = 158/370 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP----DHEGWL 57
I+ R ++R++ P+++ + +I+ E+ N+ AR +E+ + +P D ++
Sbjct: 188 INKCREIFERLIVSIPKLECFYK-FIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYI 246
Query: 58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI--NFADFEMKMGEVDRARNVYECAVE 115
+ F+ NE +R + I+ ++ P N S + NF F+ K D
Sbjct: 247 HFCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESLLIKER 306
Query: 116 IFLADDHDEAEQ---LFVAFAKFEEMGCNC--KETD--RARCIYKFALDRIPKGRAEDLY 168
IF D+ + + ++ + K EE N KE R R +Y+ A+ IP ++ +
Sbjct: 307 IFYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFW 366
Query: 169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD-----YIRLEERVGNQ 223
++++ Y E + + R Y + + K +Y+ F Y E R N
Sbjct: 367 KRYIYLWINYSIFEELYAQNIQRARDVYNN-IIKILSSYEFTFKKIFILYATFELRQLNV 425
Query: 224 ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS 283
+ R ++ A+ +P ++ ++++ E+ G++ R+VY ++ F
Sbjct: 426 NKARSIFNNALQTIP---NEKIFEKFCEF--------ELKLGNIRECRNVYAK-YVEAFP 473
Query: 284 FSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLD 339
F+ + + I EL L ++ R++ E + PE W Y ++E +L
Sbjct: 474 FNSKA-----WISMINFELSLDEVERARQIAEIAINLDDMKLPE--LIWKNYIDMEINLQ 526
Query: 340 ETERARAIFE 349
E + AR +++
Sbjct: 527 EYDNARKLYD 536
Score = 152 (58.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 46/145 (31%), Positives = 72/145 (49%)
Query: 35 NVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF 93
++ R IFER ++ ++ WL YI+ +L + AR++ ER+V P W +
Sbjct: 86 DIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIFWKKY 145
Query: 94 ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153
A E + ARN+YE ++ F D E F+ + FEE C E ++ R I++
Sbjct: 146 AHLEEILNNYVNARNIYERWIK-FKID-----ESSFLCYIYFEE---RCNEINKCREIFE 196
Query: 154 FALDRIPKGRAEDLYRKFLAFEKQY 178
+ IPK E Y KF+ FEK+Y
Sbjct: 197 RLIVSIPK--LECFY-KFIKFEKKY 218
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 49/139 (35%), Positives = 70/139 (50%)
Query: 228 EVYERAIANVPPAEEKRYWQRY-IYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFS 285
E+ E I E+K +RY I +I Y L+ E+ D+ER R ++ R L I Y +
Sbjct: 48 ELNEYRINKRKEYEDKIRKRRYMISTYIKYGLW-EIKQKDIERCRSIFERALNIDYTN-- 104
Query: 286 PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP-ENCYAWSKYTELEKSLDETERA 344
+ ++ KYIE+EL NI+ R L E+ + P EN + W KY LE+ L+ A
Sbjct: 105 -----KNLWLKYIEVELINKNINSARNLLERVVLLLPLENIF-WKKYAHLEEILNNYVNA 158
Query: 345 RAIFELAIAQPILDLPEFL 363
R I+E I I D FL
Sbjct: 159 RNIYERWIKFKI-DESSFL 176
>UNIPROTKB|Q8I1Z2 [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form" species:36329
"Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 128/354 (36%), Positives = 199/354 (56%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
I+ RN +RVV L P + W Y +EE L N AR I+ERW+ + D +L YI
Sbjct: 121 INSARNLLERVVLLLPLENIFWKKYAHLEEILNNYVNARNIYERWIKFKIDESSFLCYIY 180
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
F+ R NE+ + R IFERL+ P L + F FE K + RAR YE +E+ +
Sbjct: 181 FEERCNEINKCREIFERLIVSIP-KLECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCY 239
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
DE ++ F FEE E +R + IY AL +PK ++E LY+ FL F+K+Y ++
Sbjct: 240 IDE--NFYIHFCNFEE---EQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANK 294
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGN--QE----RVREVYERAI 234
+ + +++ K R+ YED ++KN +YD WF+YI+LEE + N +E R+R++YERAI
Sbjct: 295 DELHESLLIKERIFYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAI 354
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
+ +P K++W+RYIYLWINY++++E+ A +++R RDVY + S+ ++IF
Sbjct: 355 SIIPIISSKKFWKRYIYLWINYSIFEELYAQNIQRARDVYNNIIKILSSYE--FTFKKIF 412
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIF 348
Y EL N++ R ++ L+ P N + K+ E E L R ++
Sbjct: 413 ILYATFELRQLNVNKARSIFNNALQTIP-NEKIFEKFCEFELKLGNIRECRNVY 465
Score = 336 (123.3 bits), Expect = 1.8e-29, P = 1.8e-29
Identities = 107/379 (28%), Positives = 184/379 (48%)
Query: 4 HGRNAWDRVVTLSPRVDQL-WNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKF 62
+ RN ++R + ++D+ + YI EE + R+IFER + +P E + +IKF
Sbjct: 157 NARNIYERWIKF--KIDESSFLCYIYFEERCNEINKCREIFERLIVSIPKLECFYKFIKF 214
Query: 63 KLRYNEVQRARHIFERLVQCHP--Y-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLA 119
+ +Y + RAR +E+ ++ P Y + + +I+F +FE + E +R + +Y A++I
Sbjct: 215 EKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERCKKIYIEALKIL-- 272
Query: 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK--FALDRIPKGRAE-DLYRKFLAFEK 176
+++E L+ F +F++ N E + I + F D + K + + D++ ++ E+
Sbjct: 273 -PKNKSELLYKNFLQFQKKYANKDELHESLLIKERIFYEDELKKNKNDYDIWFNYIKLEE 331
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPM--------NYD-TWFDYIRLEERVG-NQERV 226
+ E I ++R YE + P+ Y W +Y EE N +R
Sbjct: 332 SNINNINKEKCII-RIRDLYERAISIIPIISSKKFWKRYIYLWINYSIFEELYAQNIQRA 390
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R+VY I + Y + ++I YA + E+ ++ + R ++
Sbjct: 391 RDVYNNIIKIL-----SSYEFTFKKIFILYATF-ELRQLNVNKARSIFNNAL-------Q 437
Query: 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARA 346
+ +IF+K+ E EL LGNI CR +Y KY+E P N AW E SLDE ERAR
Sbjct: 438 TIPNEKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSLDEVERARQ 497
Query: 347 IFELAIAQPILDLPEFLWK 365
I E+AI + LPE +WK
Sbjct: 498 IAEIAINLDDMKLPELIWK 516
Score = 192 (72.6 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 78/292 (26%), Positives = 129/292 (44%)
Query: 52 DHEGWLSYIKFK-LRYNEVQ------RARHIFERLVQCHPYNLSA---------WINFAD 95
D++ W +YIK + N + R R ++ER + P S WIN++
Sbjct: 319 DYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWKRYIYLWINYSI 378
Query: 96 FEMKMGE-VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF 154
FE + + RAR+VY ++I L+ +++F+ +A FE N ++AR I+
Sbjct: 379 FEELYAQNIQRARDVYNNIIKI-LSSYEFTFKKIFILYATFELRQLN---VNKARSIFNN 434
Query: 155 ALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYI 214
AL IP E ++ KF FE + G+ I + R Y V P N W I
Sbjct: 435 ALQTIPN---EKIFEKFCEFELKLGN---IREC-----RNVYAKYVEAFPFNSKAWISMI 483
Query: 215 RLEERVGNQERVREVYERAIANVPPAE-EKRYWQRYIYLWINYALYKEVDAGDLERTRDV 273
E + ER R++ E AI N+ + + W+ YI + IN Y + R +
Sbjct: 484 NFELSLDEVERARQIAEIAI-NLDDMKLPELIWKNYIDMEINLQEY--------DNARKL 534
Query: 274 YRTLFIFYFSFSPRMEERRIFKKYIEME-LCLGNIDPCRKLYEKYLEWSPEN 324
Y L + +++K Y E + L +I+ CRK+ E+ +E+ +N
Sbjct: 535 YDRLLNI-------TQHYKVYKSYAEFTYIYLDDIEMCRKILEEGIEFCKKN 579
Score = 190 (71.9 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 78/370 (21%), Positives = 163/370 (44%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYI 60
I+ R+ ++R + + LW YI +E N+ AR + ER + +P ++ W Y
Sbjct: 87 IERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIFWKKYA 146
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ N AR+I+ER ++ + S+++ + FE + E+++ R ++E + ++
Sbjct: 147 HLEEILNNYVNARNIYERWIK-FKIDESSFLCYIYFEERCNEINKCREIFE---RLIVSI 202
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA-EDLYRKFLAFEKQYG 179
E F F KFE+ K RAR Y+ ++ +P E+ Y F FE++
Sbjct: 203 PKLEC---FYKFIKFEK---KYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQN 256
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVRE---VYERAIAN 236
+ E + +++ ++ K+ + Y ++++ +++ N++ + E + ER
Sbjct: 257 EYERCKKIYIEALKILPKN---KSELLYK---NFLQFQKKYANKDELHESLLIKERIFYE 310
Query: 237 VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT--LFIFYFSFSPRMEERRIF 294
+ K + +W NY +E + ++ + + + R L+ S P + ++ +
Sbjct: 311 DELKKNKNDYD----IWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFW 366
Query: 295 KKYIEM--------ELCLGNIDPCRKLYEKYLEWSPENCYAWSK----YTELEKSLDETE 342
K+YI + EL NI R +Y ++ + + K Y E
Sbjct: 367 KRYIYLWINYSIFEELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVN 426
Query: 343 RARAIFELAI 352
+AR+IF A+
Sbjct: 427 KARSIFNNAL 436
Score = 174 (66.3 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 57/242 (23%), Positives = 115/242 (47%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYI 60
++ R+ ++ + P ++++ + E LGN+ R ++ +++ P + + W+S I
Sbjct: 425 VNKARSIFNNALQTIPN-EKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMI 483
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSA--WINFADFEMKMGEVDRARNVYECAVEIFL 118
F+L +EV+RAR I E + L W N+ D E+ + E D AR +Y+ + I
Sbjct: 484 NFELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEINLQEYDNARKLYDRLLNI-- 541
Query: 119 ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED---LYRKFLA-F 174
H +++ ++A+F + + + + R I + ++ K + + FL
Sbjct: 542 -TQH---YKVYKSYAEFTYIYLD--DIEMCRKILEEGIEFCKKNELINERCILLNFLCDI 595
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD-YIR-LEERVGNQERVREVYER 232
EK YGD+E I+ + + + + KN N D + YI + GNQ + ++ E+
Sbjct: 596 EKDYGDKEIIDKTLKRLPKKVKKRKIIKNNDNDDEIIEEYITYVFPDDGNQSQNMKILEK 655
Query: 233 AI 234
A+
Sbjct: 656 AL 657
Score = 174 (66.3 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 76/370 (20%), Positives = 158/370 (42%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP----DHEGWL 57
I+ R ++R++ P+++ + +I+ E+ N+ AR +E+ + +P D ++
Sbjct: 188 INKCREIFERLIVSIPKLECFYK-FIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYI 246
Query: 58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI--NFADFEMKMGEVDRARNVYECAVE 115
+ F+ NE +R + I+ ++ P N S + NF F+ K D
Sbjct: 247 HFCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESLLIKER 306
Query: 116 IFLADDHDEAEQ---LFVAFAKFEEMGCNC--KETD--RARCIYKFALDRIPKGRAEDLY 168
IF D+ + + ++ + K EE N KE R R +Y+ A+ IP ++ +
Sbjct: 307 IFYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFW 366
Query: 169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD-----YIRLEERVGNQ 223
++++ Y E + + R Y + + K +Y+ F Y E R N
Sbjct: 367 KRYIYLWINYSIFEELYAQNIQRARDVYNN-IIKILSSYEFTFKKIFILYATFELRQLNV 425
Query: 224 ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS 283
+ R ++ A+ +P ++ ++++ E+ G++ R+VY ++ F
Sbjct: 426 NKARSIFNNALQTIP---NEKIFEKFCEF--------ELKLGNIRECRNVYAK-YVEAFP 473
Query: 284 FSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTELEKSLD 339
F+ + + I EL L ++ R++ E + PE W Y ++E +L
Sbjct: 474 FNSKA-----WISMINFELSLDEVERARQIAEIAINLDDMKLPE--LIWKNYIDMEINLQ 526
Query: 340 ETERARAIFE 349
E + AR +++
Sbjct: 527 EYDNARKLYD 536
Score = 152 (58.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 46/145 (31%), Positives = 72/145 (49%)
Query: 35 NVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF 93
++ R IFER ++ ++ WL YI+ +L + AR++ ER+V P W +
Sbjct: 86 DIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIFWKKY 145
Query: 94 ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153
A E + ARN+YE ++ F D E F+ + FEE C E ++ R I++
Sbjct: 146 AHLEEILNNYVNARNIYERWIK-FKID-----ESSFLCYIYFEE---RCNEINKCREIFE 196
Query: 154 FALDRIPKGRAEDLYRKFLAFEKQY 178
+ IPK E Y KF+ FEK+Y
Sbjct: 197 RLIVSIPK--LECFY-KFIKFEKKY 218
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 49/139 (35%), Positives = 70/139 (50%)
Query: 228 EVYERAIANVPPAEEKRYWQRY-IYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFS 285
E+ E I E+K +RY I +I Y L+ E+ D+ER R ++ R L I Y +
Sbjct: 48 ELNEYRINKRKEYEDKIRKRRYMISTYIKYGLW-EIKQKDIERCRSIFERALNIDYTN-- 104
Query: 286 PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP-ENCYAWSKYTELEKSLDETERA 344
+ ++ KYIE+EL NI+ R L E+ + P EN + W KY LE+ L+ A
Sbjct: 105 -----KNLWLKYIEVELINKNINSARNLLERVVLLLPLENIF-WKKYAHLEEILNNYVNA 158
Query: 345 RAIFELAIAQPILDLPEFL 363
R I+E I I D FL
Sbjct: 159 RNIYERWIKFKI-DESSFL 176
>CGD|CAL0004743 [details] [associations]
symbol:orf19.332 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IEA] [GO:0071008 "U2-type
post-mRNA release spliceosomal complex" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0000974 "Prp19 complex" evidence=IEA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 EMBL:AACQ01000027
EMBL:AACQ01000026 RefSeq:XP_720027.1 RefSeq:XP_720159.1
ProteinModelPortal:Q5AED6 STRING:Q5AED6 GeneID:3638214
GeneID:3638364 KEGG:cal:CaO19.332 KEGG:cal:CaO19.7964
eggNOG:NOG327505 KO:K12869 Uniprot:Q5AED6
Length = 758
Score = 461 (167.3 bits), Expect = 4.1e-43, P = 4.1e-43
Identities = 107/367 (29%), Positives = 186/367 (50%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
I+H RN +R + PRV++LW Y++ EE L N R +FERW+ W PD W +YI
Sbjct: 171 INHARNLMERAINTLPRVNKLWFLYVQTEEMLKNYPMVRAVFERWLDWHPDTSVWDAYIN 230
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG--EVDRARNVYECAVEIFLA 119
F+ RY E + R IF++ V P N W + +EM+ +V+ R V+E AV+ L+
Sbjct: 231 FEARYEEKENVRTIFKKYVHEFP-NAGTWYKWIKYEMENNRDDVNTVRAVFESAVDTLLS 289
Query: 120 ---DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR------IPKGRAEDLYRK 170
+++D+ E+ + + +C E RA I+K LD I +Y
Sbjct: 290 NKSEENDDDEEFATIISSWTSWEVSCGEASRANEIFKLLLDNKTNKLEISDKTKSSIYTA 349
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVY 230
F+ FEK +G+++ IE ++ K R++YE ++ +P +YD+W+ Y+ L + N+ + +
Sbjct: 350 FVEFEKNFGNKDSIEQSVLIKRRIKYEQEIQNDPYDYDSWWKYMTLLQNSSNKSDLENAF 409
Query: 231 ERAIANVPPAEEKRY-WQRYIYLWINYALYKEVDAGDLERTRDVYRTLF--IFYFSFSPR 287
++ NV + K W+RYI WI YA ++E+ + + R+++ I + SF+
Sbjct: 410 KKVTGNVVHDKHKSIKWRRYIMFWIWYAFWEEMTNNNPDSAREIWNNCLKVIPHKSFT-- 467
Query: 288 MEERRIFKKYIEMEL--CLGNIDPCRKLYEKYLEWSPEN---CYAWSKYTELEKSLDETE 342
+++ Y E EL + RK+ + + + N + Y +LEK L +
Sbjct: 468 --FAKVWIGYSEFELRNSEDGLAKARKILGRAIGQTSINKPKIKIFKYYIDLEKKLGDWN 525
Query: 343 RARAIFE 349
R R +F+
Sbjct: 526 RVRLLFQ 532
Score = 196 (74.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 87/389 (22%), Positives = 177/389 (45%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R ++R + P +W+ YI E R IF++++H P+ W +IK+++
Sbjct: 209 RAVFERWLDWHPDTS-VWDAYINFEARYEEKENVRTIFKKYVHEFPNAGTWYKWIKYEME 267
Query: 66 YN--EVQRARHIFERLVQCHPYNLS---------AWI--NFADFEMKMGEVDRARNVYEC 112
N +V R +FE V N S A I ++ +E+ GE RA +++
Sbjct: 268 NNRDDVNTVRAVFESAVDTLLSNKSEENDDDEEFATIISSWTSWEVSCGEASRANEIFKL 327
Query: 113 AVE--IFLADDHDEAEQ-LFVAFAKFEEMGCNCKETDRA-----RCIYKFALDRIPKGRA 164
++ + D+ + ++ AF +FE+ N +++ R Y+ + P
Sbjct: 328 LLDNKTNKLEISDKTKSSIYTAFVEFEKNFGNKDSIEQSVLIKRRIKYEQEIQNDPYDY- 386
Query: 165 EDLYRKFLAFEKQYGDREGIEDA---IAGKMRLQYEDGVR-KNPMNYDTWFDYIRLEERV 220
D + K++ + ++ +E+A + G + ++ + + + W+ + EE
Sbjct: 387 -DSWWKYMTLLQNSSNKSDLENAFKKVTGNVVHDKHKSIKWRRYIMFWIWYAF--WEEMT 443
Query: 221 GNQ-ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-LERTRDVYRTLF 278
N + RE++ + +P K + + +WI Y+ ++ ++ D L + R +
Sbjct: 444 NNNPDSAREIWNNCLKVIP---HKSF--TFAKVWIGYSEFELRNSEDGLAKARKILGRA- 497
Query: 279 IFYFSFS-PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS----PENCYAWSKYTE 333
I S + P++ +IFK YI++E LG+ + R L++K+LE S + KY E
Sbjct: 498 IGQTSINKPKI---KIFKYYIDLEKKLGDWNRVRLLFQKWLEVSLLTTSSSELVIEKYVE 554
Query: 334 LEKSLDETERARAIFELAIAQPILDLPEF 362
E S++E +R +I L+ A+ + + PE+
Sbjct: 555 FESSIEEYDRCDSI--LSSARQLSENPEY 581
Score = 154 (59.3 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 83/381 (21%), Positives = 168/381 (44%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKL 64
R+ +R + ++ + W YI++E + N+ AR + ER ++ +P ++ W Y++ +
Sbjct: 141 RSILERALDVNIQHVPFWIQYIQLELSHKNINHARNLMERAINTLPRVNKLWFLYVQTEE 200
Query: 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE 124
R +FER + HP + S W + +FE + E + R +++ V F
Sbjct: 201 MLKNYPMVRAVFERWLDWHP-DTSVWDAYINFEARYEEKENVRTIFKKYVHEF-----PN 254
Query: 125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE--DLYRKFLAFEKQYGDRE 182
A + + K+E M N + + R +++ A+D + ++E D +F + E
Sbjct: 255 AGTWY-KWIKYE-MENNRDDVNTVRAVFESAVDTLLSNKSEENDDDEEFATIISSWTSWE 312
Query: 183 GI--EDAIAGKM-RLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERV-------RE 228
E + A ++ +L ++ K ++ T + ++ E+ GN++ + R
Sbjct: 313 VSCGEASRANEIFKLLLDNKTNKLEISDKTKSSIYTAFVEFEKNFGNKDSIEQSVLIKRR 372
Query: 229 V-YERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
+ YE+ I N P + W +Y+ L N + +++ + T +V + S R
Sbjct: 373 IKYEQEIQNDPYDYDS--WWKYMTLLQNSSNKSDLENAFKKVTGNVVHDK---HKSIKWR 427
Query: 288 MEERR-IFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK----YTELE--KSLDE 340
I+ + E E+ N D R+++ L+ P + ++K Y+E E S D
Sbjct: 428 RYIMFWIWYAFWE-EMTNNNPDSAREIWNNCLKVIPHKSFTFAKVWIGYSEFELRNSEDG 486
Query: 341 TERARAIFELAIAQPILDLPE 361
+AR I AI Q ++ P+
Sbjct: 487 LAKARKILGRAIGQTSINKPK 507
Score = 139 (54.0 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 47/182 (25%), Positives = 82/182 (45%)
Query: 170 KFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLE-ERVGNQERVRE 228
KF + D E ++ K R ++E + KN +N W Y + E E + R R
Sbjct: 84 KFTTPRQTIQDTEELQSYQQTK-RKEFEQHINKNRLNLGQWTRYAKWEIENNHDFPRARS 142
Query: 229 VYERAI-ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287
+ ERA+ N+ + +W +YI L +++ K ++ R + TL PR
Sbjct: 143 ILERALDVNI---QHVPFWIQYIQLELSH---KNINHARNLMERAI-NTL--------PR 187
Query: 288 MEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAI 347
+ +++ Y++ E L N R ++E++L+W P+ W Y E +E E R I
Sbjct: 188 VN--KLWFLYVQTEEMLKNYPMVRAVFERWLDWHPDTS-VWDAYINFEARYEEKENVRTI 244
Query: 348 FE 349
F+
Sbjct: 245 FK 246
>SGD|S000004107 [details] [associations]
symbol:CLF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0000785 "chromatin"
evidence=IDA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IC] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=IDA] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0071008 "U2-type post-mRNA release spliceosomal
complex" evidence=IDA] [GO:0000974 "Prp19 complex" evidence=IDA]
[GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=IDA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IMP;IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006270 "DNA
replication initiation" evidence=IMP;IPI] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003688 "DNA replication
origin binding" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
SGD:S000004107 GO:GO:0000785 GO:GO:0003682 EMBL:BK006945
GO:GO:0003688 GO:GO:0007049 GO:GO:0006270 Gene3D:1.25.40.10
EMBL:X89514 EMBL:U53877 GO:GO:0000974 GO:GO:0071006
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
OrthoDB:EOG4NKG44 EMBL:Z73289 PIR:S64954 RefSeq:NP_013218.1
ProteinModelPortal:Q12309 SMR:Q12309 DIP:DIP-1685N IntAct:Q12309
MINT:MINT-385873 STRING:Q12309 PaxDb:Q12309 PRIDE:Q12309
EnsemblFungi:YLR117C GeneID:850808 KEGG:sce:YLR117C CYGD:YLR117c
GeneTree:ENSGT00550000074931 NextBio:967040 Genevestigator:Q12309
GermOnline:YLR117C GO:GO:0071007 GO:GO:0071008 GO:GO:0071004
GO:GO:0000354 Uniprot:Q12309
Length = 687
Score = 430 (156.4 bits), Expect = 6.2e-40, P = 6.2e-40
Identities = 109/368 (29%), Positives = 187/368 (50%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
I+H RN +R ++ PRVD+LW Y+ +EE+L NV R ++ +W P W S++
Sbjct: 115 INHARNLMNRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVD 174
Query: 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF---- 117
F++R R I+ + V HP + W+ + FE + G + R+VY A++
Sbjct: 175 FEIRQKNWNGVREIYSKYVMAHP-QMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQ 233
Query: 118 -LADDHD-EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175
L D E +L +FA +E +E +R+ +Y+ A+++ P + L L FE
Sbjct: 234 NLQIWSDMEVAKLVNSFAHWEAAQ---QEYERSSALYQIAIEKWPSNQL--LKAGLLDFE 288
Query: 176 KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIA 235
KQ+GD IE+ I+ K +++YE + N +YDTW+ Y+ L +++ + +E+AI
Sbjct: 289 KQFGDINSIEETISYKRKMEYETILSNNAYDYDTWWLYLDLISE-SFPKQIMQTFEKAIV 347
Query: 236 NVPPAEEKR--YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF--IF---YFSFSPRM 288
+ P E + W+RYIYLW+ Y Y E++ + ++++ L I +F+FS
Sbjct: 348 DSRPKELSKNVQWKRYIYLWMRYICYVELELENSLLEEELFQRLIDDIIPHKHFTFS--- 404
Query: 289 EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIF 348
+I+ Y + + ++ RK+ K + P+ + Y ELE L E +R R I+
Sbjct: 405 ---KIWLMYAKFLIRHDDVPKARKILGKAIGLCPK-AKTFKGYIELEVKLKEFDRVRKIY 460
Query: 349 ELAIA-QP 355
E I QP
Sbjct: 461 EKFIEFQP 468
Score = 258 (95.9 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 92/367 (25%), Positives = 171/367 (46%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
R+ + + +L P V+ WN+++ E N G R+I+ +++ P + WL +++F+ R
Sbjct: 153 RSLYTKWCSLEPGVNA-WNSFVDFEIRQKNWNGVREIYSKYVMAHPQMQTWLKWVRFENR 211
Query: 66 YNEVQRARHIFERLVQ--CHPYNLSAW--------IN-FADFEMKMGEVDRARNVYECAV 114
+ + R ++ + + NL W +N FA +E E +R+ +Y+ A+
Sbjct: 212 HGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWEAAQQEYERSSALYQIAI 271
Query: 115 EIFLADDHDEAEQLFVAFAK-FEEMGCNCKETDRARCIYKFALDRIPKGRAED-----LY 168
E + ++ +A L F K F ++ + +ET + K + I A D LY
Sbjct: 272 EKWPSNQLLKAGLL--DFEKQFGDIN-SIEETISYK--RKMEYETILSNNAYDYDTWWLY 326
Query: 169 RKFLA--FEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYI-RLEERVGNQER 225
++ F KQ + E AI + V+ Y W YI +E + N
Sbjct: 327 LDLISESFPKQI--MQTFEKAIVDSRPKELSKNVQWKRYIY-LWMRYICYVELELENSLL 383
Query: 226 VREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285
E+++R I ++ P K + + +W+ YA + + D+ + R +
Sbjct: 384 EEELFQRLIDDIIP--HKHF--TFSKIWLMYAKFL-IRHDDVPKARKILGKAI----GLC 434
Query: 286 PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERAR 345
P+ + FK YIE+E+ L D RK+YEK++E+ P + WS+Y ELE++L + +R R
Sbjct: 435 PKA---KTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSDLQIWSQYGELEENLGDWDRVR 491
Query: 346 AIFELAI 352
I+ +A+
Sbjct: 492 GIYTIAL 498
Score = 140 (54.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 33/137 (24%), Positives = 65/137 (47%)
Query: 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV 80
++W Y + +V AR+I + + P + + YI+ +++ E R R I+E+ +
Sbjct: 405 KIWLMYAKFLIRHDDVPKARKILGKAIGLCPKAKTFKGYIELEVKLKEFDRVRKIYEKFI 464
Query: 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGC 140
+ P +L W + + E +G+ DR R +Y A++ D E V K+
Sbjct: 465 EFQPSDLQIWSQYGELEENLGDWDRVRGIYTIALDE--NSDFLTKEAKIVLLQKYITFET 522
Query: 141 NCKETDRARCIYKFALD 157
+E ++AR +Y+ L+
Sbjct: 523 ESQEFEKARKLYRRYLE 539
Score = 126 (49.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 75/365 (20%), Positives = 143/365 (39%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKL 64
R+ ++R + + LW YI E + + AR + R + +P + W Y+ +
Sbjct: 85 RSIFERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAISTLPRVDKLWYKYLIVEE 144
Query: 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE 124
N V+ R ++ + P ++AW +F DFE++ + R +Y V +A H +
Sbjct: 145 SLNNVEIVRSLYTKWCSLEP-GVNAWNSFVDFEIRQKNWNGVREIYSKYV---MA--HPQ 198
Query: 125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYR--KFLAFEKQYGDRE 182
Q ++ + +FE N T+ R +Y A+D + + ++ + + E
Sbjct: 199 M-QTWLKWVRFENRHGN---TEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWE 254
Query: 183 GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV--YERAIANVPPA 240
+ L Y+ + K P N + E++ G+ + E Y+R +
Sbjct: 255 AAQQEYERSSAL-YQIAIEKWPSNQLLKAGLLDFEKQFGDINSIEETISYKRKMEYETIL 313
Query: 241 EEKRY----WQRYIYLWINYALYKE---------VDAGDLERTRDVYRTLFIFYFSFSPR 287
Y W Y+ L I+ + K+ VD+ E +++V +I+ +
Sbjct: 314 SNNAYDYDTWWLYLDL-ISESFPKQIMQTFEKAIVDSRPKELSKNVQWKRYIYLWMRYIC 372
Query: 288 MEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAI 347
E + +E EL ID + K+ +S W Y + D+ +AR I
Sbjct: 373 YVELELENSLLEEELFQRLIDDI--IPHKHFTFSK----IWLMYAKFLIRHDDVPKARKI 426
Query: 348 FELAI 352
AI
Sbjct: 427 LGKAI 431
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 55/231 (23%), Positives = 101/231 (43%)
Query: 70 QRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129
+R R +E ++ + ++ WI +A FE++ ++ RAR+++E A+ L D L+
Sbjct: 48 RRKRTEYEGYLKRNRLDMGQWIRYAQFEIEQHDMRRARSIFERAL---LVDS--SFIPLW 102
Query: 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDRE------- 182
+ + E+ C + AR + A+ +P R + L+ K+L E+ + E
Sbjct: 103 IRYID-AELKVKC--INHARNLMNRAISTLP--RVDKLWYKYLIVEESLNNVEIVRSLYT 157
Query: 183 ---GIEDAI-AGKMRLQYE------DGVRKNPMNY-------DTWFDYIRLEERVGNQER 225
+E + A + +E +GVR+ Y TW ++R E R GN E
Sbjct: 158 KWCSLEPGVNAWNSFVDFEIRQKNWNGVREIYSKYVMAHPQMQTWLKWVRFENRHGNTEF 217
Query: 226 VREVYERAIANVPPAEEKRYWQRY-IYLWINYALYKEVDAGDLERTRDVYR 275
R VY AI V + + W + +N + E + ER+ +Y+
Sbjct: 218 TRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWEAAQQEYERSSALYQ 268
Score = 122 (48.0 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 38/146 (26%), Positives = 68/146 (46%)
Query: 209 TWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLE 268
T+ YI LE ++ +RVR++YE+ I P++ + +W Y +E + GD +
Sbjct: 439 TFKGYIELEVKLKEFDRVRKIYEKFI-EFQPSD--------LQIWSQYGELEE-NLGDWD 488
Query: 269 RTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAW 328
R R +Y F + + + +KYI E + RKLY +YLE + + +W
Sbjct: 489 RVRGIYTIALDENSDFLTKEAKIVLLQKYITFETESQEFEKARKLYRRYLELNQYSPQSW 548
Query: 329 SKYTELEKSLDETERARAIFELAIAQ 354
++ + S T + + +LA Q
Sbjct: 549 IEFAMYQTS---TPTEQQLLDLAKLQ 571
Score = 106 (42.4 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV 114
W+ Y +F++ ++++RAR IFER + + WI + D E+K+ ++ ARN+ A+
Sbjct: 68 WIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAI 126
>TAIR|locus:2184236 [details] [associations]
symbol:AT5G28740 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 EMBL:AF262041 eggNOG:NOG289100 KO:K12867
HOGENOM:HOG000176133 OMA:RRYLMYD IPI:IPI00544799 RefSeq:NP_198226.1
UniGene:At.47571 ProteinModelPortal:Q9LKU3 SMR:Q9LKU3 IntAct:Q9LKU3
STRING:Q9LKU3 PaxDb:Q9LKU3 PRIDE:Q9LKU3 EnsemblPlants:AT5G28740.1
GeneID:832986 KEGG:ath:AT5G28740 TAIR:At5g28740 InParanoid:Q9LKU3
PhylomeDB:Q9LKU3 ProtClustDB:CLSN2687354 Genevestigator:Q9LKU3
Uniprot:Q9LKU3
Length = 917
Score = 173 (66.0 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 90/339 (26%), Positives = 155/339 (45%)
Query: 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCH----PYNLSAWINFADFEMK----MGEVD 104
H W+++ K + ++ R IF++ VQ + + S W +A+ E++ G ++
Sbjct: 423 HTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALE 482
Query: 105 ---RARNVYECAVEIFLADDHDEAEQLFV-----AFAKFEEMGCNCKETDRARCIYKFAL 156
RA V V +A D +E Q+ + ++ + ++ + + R +Y+ L
Sbjct: 483 LMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEKIL 542
Query: 157 D-RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR--KNPMNYDTWFDY 213
D RI + Y FL E +Y EDA K+ YE GV+ K P D W Y
Sbjct: 543 DLRIATPQIIMNYA-FLLEENKY-----FEDAF--KV---YERGVKIFKYPHVKDIWVTY 591
Query: 214 I-RLEERVGNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERT 270
+ + +R G ER RE++E A++ + P++ R L++ YA +E D G +R
Sbjct: 592 LTKFVKRYGKTKLERARELFEHAVS-MAPSDAVRT------LYLQYAKLEE-DYGLAKRA 643
Query: 271 RDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS-PENCYAWS 329
VY P ++ +++ YI + + R++YE+ +E P
Sbjct: 644 MKVYEEAT----KKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIM 699
Query: 330 --KYTELEKSLDETERARAIFELA--IAQPILDLPEFLW 364
K+ ELE+SL E +RARA+++ + A P D PEF W
Sbjct: 700 CIKFAELERSLGEIDRARALYKYSSQFADPRSD-PEF-W 736
Score = 160 (61.4 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 63/265 (23%), Positives = 122/265 (46%)
Query: 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEV-QRARHIFERL 79
+LW+ Y+ +EE+LG + R ++E+ + + F L N+ + A ++ER
Sbjct: 516 RLWSFYVDLEESLGTLESTRAVYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERG 575
Query: 80 VQC--HPYNLSAWINF-ADFEMKMGE--VDRARNVYECAVEIFLADDHDEAEQLFVAFAK 134
V+ +P+ W+ + F + G+ ++RAR ++E AV +A D L++ +AK
Sbjct: 576 VKIFKYPHVKDIWVTYLTKFVKRYGKTKLERARELFEHAVS--MAPS-DAVRTLYLQYAK 632
Query: 135 FEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ-YG---DREGIEDAIAG 190
EE K RA +Y+ A ++P+G+ ++Y +++ + +G RE E AI
Sbjct: 633 LEEDYGLAK---RAMKVYEEATKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAI-- 687
Query: 191 KMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI 250
E G+ + + LE +G +R R +Y+ + P + +W +
Sbjct: 688 ------ESGLPHKDVKI-MCIKFAELERSLGEIDRARALYKYSSQFADPRSDPEFWNK-- 738
Query: 251 YLWINYALYKEVDAGDLERTRDVYR 275
W + EV G+ + R++ R
Sbjct: 739 --WHEF----EVQHGNEDTYREMLR 757
Score = 151 (58.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 79/344 (22%), Positives = 145/344 (42%)
Query: 22 LWNNYIRMEENLGNVAGARQIFERWM---HWMPDHEG--WLSYIKFKLRYNEVQRARHIF 76
LW + ++ EN ++ R IF++ + + DH W + + +LR+ + A +
Sbjct: 425 LWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALELM 484
Query: 77 ERL-------------------VQCHPY-NLSAWINFADFEMKMGEVDRARNVYECAVEI 116
R VQ + +L W + D E +G ++ R VYE +++
Sbjct: 485 RRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEKILDL 544
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FE 175
+A Q+ + +A E K + A +Y+ + +D++ +L F
Sbjct: 545 RIA-----TPQIIMNYAFLLEEN---KYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFV 596
Query: 176 KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERA 233
K+YG + +E A R +E V P + + Y +LEE G +R +VYE A
Sbjct: 597 KRYGKTK-LERA-----RELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEA 650
Query: 234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRI 293
VP ++ ++ YI + + + RTR++Y S P + + +
Sbjct: 651 TKKVPEGQKLEMYEIYIS--------RAAEIFGVPRTREIYEQAIE---SGLPHKDVKIM 699
Query: 294 FKKYIEMELCLGNIDPCRKLYEKYLEWS-PENCYA-WSKYTELE 335
K+ E+E LG ID R LY+ +++ P + W+K+ E E
Sbjct: 700 CIKFAELERSLGEIDRARALYKYSSQFADPRSDPEFWNKWHEFE 743
Score = 149 (57.5 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 68/302 (22%), Positives = 129/302 (42%)
Query: 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE 115
W Y+ + ++ R ++E+++ +N+A + + A VYE V+
Sbjct: 518 WSFYVDLEESLGTLESTRAVYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGVK 577
Query: 116 IFLADDHDEAEQLFVAF-AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174
IF + + ++V + KF + K +RAR +++ A+ P LY ++
Sbjct: 578 IF---KYPHVKDIWVTYLTKFVKRYGKTK-LERARELFEHAVSMAPSDAVRTLYLQYAKL 633
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNP--MNYDTWFDYIRLEERVGNQERVREVYER 232
E+ YG +A + YE+ +K P + + YI + R RE+YE+
Sbjct: 634 EEDYG--------LAKRAMKVYEEATKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQ 685
Query: 233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERR 292
AI + P ++ + + I +A E G+++R R +Y+ + F+ PR +
Sbjct: 686 AIESGLPHKDVKI------MCIKFAEL-ERSLGEIDRARALYK--YSSQFA-DPRSDPE- 734
Query: 293 IFKKYIEMELCLGNIDPCRKLYE-------KYLEWS---PENCYAWSKYTELEKSLDETE 342
+ K+ E E+ GN D R++ Y + PEN K ++E + E +
Sbjct: 735 FWNKWHEFEVQHGNEDTYREMLRIKRSVSASYSQTHFILPENMMQKDKLLDVEDAKGELK 794
Query: 343 RA 344
RA
Sbjct: 795 RA 796
Score = 139 (54.0 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 62/239 (25%), Positives = 114/239 (47%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNY-IRMEENLGNVAGARQIFERWMH-WMPDH--EGWL 57
++ R +++++ L Q+ NY +EEN A +++ER + + H + W+
Sbjct: 531 LESTRAVYEKILDLRIATPQIIMNYAFLLEENK-YFEDAFKVYERGVKIFKYPHVKDIWV 589
Query: 58 SYI-KFKLRYNE--VQRARHIFERLVQCHPYNL--SAWINFADFEMKMGEVDRARNVYEC 112
+Y+ KF RY + ++RAR +FE V P + + ++ +A E G RA VYE
Sbjct: 590 TYLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEE 649
Query: 113 AVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR-IPKGRAEDLYRKF 171
A + E +++++ A E G R R IY+ A++ +P + + KF
Sbjct: 650 ATKKVPEGQKLEMYEIYISRAA-EIFG-----VPRTREIYEQAIESGLPHKDVKIMCIKF 703
Query: 172 LAFEKQYGDREGIEDAIA-GKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV 229
E+ G+ I+ A A K Q+ D R +P ++ W ++ E + GN++ RE+
Sbjct: 704 AELERSLGE---IDRARALYKYSSQFADP-RSDPEFWNKWHEF---EVQHGNEDTYREM 755
Score = 45 (20.9 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 56 WLSYIKFKLRYNEVQRARHIFE 77
W S + +R N +++AR I+E
Sbjct: 252 WTSLADYYIRKNLLEKARDIYE 273
>ZFIN|ZDB-GENE-030131-4076 [details] [associations]
symbol:pdcd11 "programmed cell death 11"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 ZFIN:ZDB-GENE-030131-4076 GO:GO:0003723 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HOGENOM:HOG000088607 HOVERGEN:HBG108419 OMA:LHLADIY
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 EMBL:CR812943
IPI:IPI00817258 UniGene:Dr.76104 Ensembl:ENSDART00000074342
Ensembl:ENSDART00000124833 Uniprot:B8JIP9
Length = 1816
Score = 173 (66.0 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 58/251 (23%), Positives = 113/251 (45%)
Query: 8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------WLSYIK 61
A++R++ SP LW Y+ + AR + ER + + E W++ +
Sbjct: 1552 AFERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLN 1611
Query: 62 FKLRYNEVQRARHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ Y + +FER +Q C P L + AD K ++ A ++Y+ V+ F D
Sbjct: 1612 LENMYGTPDSLQKVFERAIQYCEP--LLVYQQLADIYAKSEKIKEAESLYKSMVKRFRQD 1669
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ +++++ F +++D A + + AL + DL +F E Q+G+
Sbjct: 1670 -----KAVYLSYGTFL---LRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFGN 1721
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVPP 239
E K + ++ + P D W +I L + G+Q+ VRE+++R I +V
Sbjct: 1722 SE--------KAKSMFDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSV 1773
Query: 240 AEEKRYWQRYI 250
+ K +++RY+
Sbjct: 1774 KKIKFFFKRYL 1784
Score = 141 (54.7 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 56/227 (24%), Positives = 102/227 (44%)
Query: 43 FERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHPYN-----LSAWINFADF 96
FER + PD WL Y+ F L+ ++++AR + ER ++ + L+ W+ +
Sbjct: 1553 FERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNL 1612
Query: 97 EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL 156
E G D + V+E A++ + +QL +AK E++ KE A +YK +
Sbjct: 1613 ENMYGTPDSLQKVFERAIQY--CEPLLVYQQLADIYAKSEKI----KE---AESLYKSMV 1663
Query: 157 DRIPKGRAEDL-YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIR 215
R + +A L Y FL ++Q DA ++ + K + D + R
Sbjct: 1664 KRFRQDKAVYLSYGTFLLRQRQ-------SDAANALLQRALQSLSSKE--HVDLIARFAR 1714
Query: 216 LEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262
LE + GN E+ + ++++ + P + W +I L + + KEV
Sbjct: 1715 LEFQFGNSEKAKSMFDKVLTTYPKRTD--LWSVFIDLMVKHGSQKEV 1759
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 173 (66.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 65/265 (24%), Positives = 116/265 (43%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------WLSYIKF 62
+DR+V SP LW Y+ + AR + ER + + E W++ +
Sbjct: 1596 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1655
Query: 63 KLRYNEVQRARHIFERLVQCHPYN--LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ Y + +FER VQ YN L +++ AD K + A +Y ++ F +
Sbjct: 1656 ENMYGSQESLTKVFERAVQ---YNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQE 1712
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ +++ + F + R + + AL+ +PK D+ KF E Q GD
Sbjct: 1713 -----KAVWIKYGAFLLRRGQAGASHR---VMQRALECLPKKEHVDVIAKFAQLEFQLGD 1764
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVPP 239
E + AI +E+ + P D W YI + + G+Q+ VR+++ER I ++ P
Sbjct: 1765 AERAK-AI-------FENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAP 1816
Query: 240 AEEKRYWQRYIYLWINYALYKEVDA 264
K +++RY+ + K+V A
Sbjct: 1817 KRMKFFFKRYLDYEKQHGTEKDVQA 1841
Score = 131 (51.2 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 46/241 (19%), Positives = 106/241 (43%)
Query: 2 IDHGRNAWDRVV-TLSPRVDQ----LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW 56
I+ R +R + T+S R +Q +W + +E G+ ++FER + + + +
Sbjct: 1623 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVF 1682
Query: 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
L + + Q A ++ R+++ + WI + F ++ G+ + V + A+E
Sbjct: 1683 LHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALEC 1742
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
+H + AKF ++ + +RA+ I++ L PK D++ ++
Sbjct: 1743 LPKKEHVDV------IAKFAQLEFQLGDAERAKAIFENTLSTYPK--RTDVWSVYIDMII 1794
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
++G ++ + D + L ++ + + DY E++ G ++ V+ V +A+
Sbjct: 1795 KHGSQKEVRDIFERVIHLSLAP--KRMKFFFKRYLDY---EKQHGTEKDVQAVKAKALEY 1849
Query: 237 V 237
V
Sbjct: 1850 V 1850
Score = 128 (50.1 bits), Expect = 0.00019, P = 0.00019
Identities = 57/244 (23%), Positives = 111/244 (45%)
Query: 28 RMEENL---GNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCH 83
R+EE L G + F+R + P+ WL Y+ F L+ E+++AR + ER ++
Sbjct: 1578 RLEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI 1637
Query: 84 PYN-----LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
+ L+ W+ + E G + V+E AV+ ++E ++F+ A ++
Sbjct: 1638 SFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQ------YNEPLKVFLHLA---DI 1688
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
++ A +Y L R + +A ++ K+ AF + G + G + M+ E
Sbjct: 1689 YTKSEKFQEAGELYNRMLKRFRQEKA--VWIKYGAFLLRRG-QAGASHRV---MQRALEC 1742
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
+K + D + +LE ++G+ ER + ++E ++ P + W YI + I +
Sbjct: 1743 LPKKE--HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD--VWSVYIDMIIKHGS 1798
Query: 259 YKEV 262
KEV
Sbjct: 1799 QKEV 1802
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 173 (66.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 65/265 (24%), Positives = 116/265 (43%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------WLSYIKF 62
+DR+V SP LW Y+ + AR + ER + + E W++ +
Sbjct: 1613 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1672
Query: 63 KLRYNEVQRARHIFERLVQCHPYN--LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ Y + +FER VQ YN L +++ AD K + A +Y ++ F +
Sbjct: 1673 ENMYGSQESLTKVFERAVQ---YNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQE 1729
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ +++ + F + R + + AL+ +PK D+ KF E Q GD
Sbjct: 1730 -----KAVWIKYGAFLLRRGQAGASHR---VMQRALECLPKKEHVDVIAKFAQLEFQLGD 1781
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVPP 239
E + AI +E+ + P D W YI + + G+Q+ VR+++ER I ++ P
Sbjct: 1782 AERAK-AI-------FENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAP 1833
Query: 240 AEEKRYWQRYIYLWINYALYKEVDA 264
K +++RY+ + K+V A
Sbjct: 1834 KRMKFFFKRYLDYEKQHGTEKDVQA 1858
Score = 131 (51.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 46/241 (19%), Positives = 106/241 (43%)
Query: 2 IDHGRNAWDRVV-TLSPRVDQ----LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW 56
I+ R +R + T+S R +Q +W + +E G+ ++FER + + + +
Sbjct: 1640 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVF 1699
Query: 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
L + + Q A ++ R+++ + WI + F ++ G+ + V + A+E
Sbjct: 1700 LHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALEC 1759
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
+H + AKF ++ + +RA+ I++ L PK D++ ++
Sbjct: 1760 LPKKEHVDV------IAKFAQLEFQLGDAERAKAIFENTLSTYPK--RTDVWSVYIDMII 1811
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
++G ++ + D + L ++ + + DY E++ G ++ V+ V +A+
Sbjct: 1812 KHGSQKEVRDIFERVIHLSLAP--KRMKFFFKRYLDY---EKQHGTEKDVQAVKAKALEY 1866
Query: 237 V 237
V
Sbjct: 1867 V 1867
Score = 128 (50.1 bits), Expect = 0.00020, P = 0.00020
Identities = 57/244 (23%), Positives = 111/244 (45%)
Query: 28 RMEENL---GNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCH 83
R+EE L G + F+R + P+ WL Y+ F L+ E+++AR + ER ++
Sbjct: 1595 RLEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI 1654
Query: 84 PYN-----LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
+ L+ W+ + E G + V+E AV+ ++E ++F+ A ++
Sbjct: 1655 SFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQ------YNEPLKVFLHLA---DI 1705
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
++ A +Y L R + +A ++ K+ AF + G + G + M+ E
Sbjct: 1706 YTKSEKFQEAGELYNRMLKRFRQEKA--VWIKYGAFLLRRG-QAGASHRV---MQRALEC 1759
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
+K + D + +LE ++G+ ER + ++E ++ P + W YI + I +
Sbjct: 1760 LPKKE--HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD--VWSVYIDMIIKHGS 1815
Query: 259 YKEV 262
KEV
Sbjct: 1816 QKEV 1819
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 171 (65.3 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 64/265 (24%), Positives = 115/265 (43%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------WLSYIKF 62
+DR+V SP LW Y+ + AR + ER + + E W++ +
Sbjct: 1608 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1667
Query: 63 KLRYNEVQRARHIFERLVQCHPYN--LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ Y + +FER VQ YN L +++ AD K + A +Y ++ F +
Sbjct: 1668 ENMYGSQESLTKVFERAVQ---YNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQE 1724
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ +++ + F + R + + AL+ +P D+ KF E Q GD
Sbjct: 1725 -----KAVWIKYGAFLLRRSQAAASHR---VLQRALECLPSKEHVDVIAKFAQLEFQLGD 1776
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVPP 239
E + AI +E+ + P D W YI + + G+Q+ VR+++ER I ++ P
Sbjct: 1777 AERAK-AI-------FENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAP 1828
Query: 240 AEEKRYWQRYIYLWINYALYKEVDA 264
K +++RY+ + K+V A
Sbjct: 1829 KRMKFFFKRYLDYEKQHGTEKDVQA 1853
Score = 129 (50.5 bits), Expect = 0.00015, P = 0.00015
Identities = 45/241 (18%), Positives = 106/241 (43%)
Query: 2 IDHGRNAWDRVV-TLSPRVDQ----LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW 56
I+ R +R + T+S R +Q +W + +E G+ ++FER + + + +
Sbjct: 1635 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVF 1694
Query: 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
L + + Q A ++ R+++ + WI + F ++ + + V + A+E
Sbjct: 1695 LHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALEC 1754
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
+ +H + AKF ++ + +RA+ I++ L PK D++ ++
Sbjct: 1755 LPSKEHVDV------IAKFAQLEFQLGDAERAKAIFENTLSTYPK--RTDVWSVYIDMTI 1806
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
++G ++ + D + L ++ + + DY E++ G ++ V+ V +A+
Sbjct: 1807 KHGSQKDVRDIFERVIHLSLAP--KRMKFFFKRYLDY---EKQHGTEKDVQAVKAKALEY 1861
Query: 237 V 237
V
Sbjct: 1862 V 1862
>FB|FBgn0033859 [details] [associations]
symbol:CG6197 species:7227 "Drosophila melanogaster"
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 EMBL:AE013599 GO:GO:0006911 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW GeneTree:ENSGT00550000075140
EMBL:BT133178 RefSeq:NP_610891.1 UniGene:Dm.606 SMR:A1Z9G2
IntAct:A1Z9G2 STRING:A1Z9G2 EnsemblMetazoa:FBtr0087623 GeneID:36514
KEGG:dme:Dmel_CG6197 UCSC:CG6197-RA FlyBase:FBgn0033859
InParanoid:A1Z9G2 OrthoDB:EOG42FQZD GenomeRNAi:36514 NextBio:798953
Uniprot:A1Z9G2
Length = 883
Score = 166 (63.5 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 84/320 (26%), Positives = 137/320 (42%)
Query: 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY---NLSA-WINFADFEMKMGEVDRARN 108
H W+ + KF +V+ AR +FER + +L+A W +A+ E++ + + A
Sbjct: 394 HTLWVEFAKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCEWAEMELRQQQFEAALK 453
Query: 109 VYECAV-----EIFLADDHDEAEQLFVAFAKFEEMGCNCKET----DRARCIYKFALD-R 158
+ + A +I DD + + K M + +E+ + +Y+ +D +
Sbjct: 454 LMQRATAMPKRKIAYYDDTETVQARLHRSLKVWSMYADLEESFGTFKTCKAVYERIIDLK 513
Query: 159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR--KNPMNYDTWFDYI-R 215
I + Y FL E Y E+A YE G+ K P YD W Y+ +
Sbjct: 514 ICTPQIIINYGMFLE-EHNY-----FEEAYRA-----YEKGISLFKWPNVYDIWNSYLTK 562
Query: 216 LEERVGNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDV 273
ER G ER R+++E+ + PP K Y YL LY + LE +
Sbjct: 563 FLERYGGTKLERARDLFEQCLDQCPPEHAK-----YFYL-----LYAK-----LEEEHGL 607
Query: 274 YRTLFIFYFSFSPRMEERRIFKKY---IEMELCLGNIDPCRKLYEKYLEWSPE-NC-YAW 328
R Y + ++E +F Y I+ + + R++YEK +E PE N +
Sbjct: 608 ARHAMSVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREIYEKAIESLPEQNMRHMC 667
Query: 329 SKYTELEKSLDETERARAIF 348
K+ ELE L E +RARAI+
Sbjct: 668 VKFAELETKLGEVDRARAIY 687
Score = 134 (52.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 58/229 (25%), Positives = 103/229 (44%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH---WMPDHEGWLSYI-KFKL 64
++R++ L Q+ NY E A + +E+ + W ++ W SY+ KF
Sbjct: 506 YERIIDLKICTPQIIINYGMFLEEHNYFEEAYRAYEKGISLFKWPNVYDIWNSYLTKFLE 565
Query: 65 RYN--EVQRARHIFER-LVQCHPYNLSA-WINFADFEMKMGEVDRARNVYECAVEIFLAD 120
RY +++RAR +FE+ L QC P + ++ +A E + G A +VY+ A D
Sbjct: 566 RYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKLEEEHGLARHAMSVYDRATSAVKED 625
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ + +F+ A E G R R IY+ A++ +P+ + KF E + G+
Sbjct: 626 EMFDMYNIFIKKAA-EIYGL-----PRTREIYEKAIESLPEQNMRHMCVKFAELETKLGE 679
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV 229
++ A A R + TW ++ E R GN++ +RE+
Sbjct: 680 ---VDRARAIYAHCSQVCDPRITADFWQTWKEF---EVRHGNEDTMREM 722
Score = 124 (48.7 bits), Expect = 0.00022, P = 0.00022
Identities = 49/217 (22%), Positives = 94/217 (43%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMP-DHE 54
+ + A+++ ++L P V +WN+Y+ + E G + AR +FE+ + P +H
Sbjct: 532 YFEEAYRAYEKGISLFKWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHA 591
Query: 55 GW--LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV---DRARNV 109
+ L Y K + + + A +++R + + + F K E+ R R +
Sbjct: 592 KYFYLLYAKLEEEHGLARHAMSVYDRATSAVKED-EMFDMYNIFIKKAAEIYGLPRTREI 650
Query: 110 YECAVEIFLADDHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGRAEDLY 168
YE A+E + V FA+ E ++G E DRAR IY D +
Sbjct: 651 YEKAIESL---PEQNMRHMCVKFAELETKLG----EVDRARAIYAHCSQVCDPRITADFW 703
Query: 169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM 205
+ + FE ++G+ + + + + K +Q + N M
Sbjct: 704 QTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNMM 740
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 169 (64.5 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 64/265 (24%), Positives = 113/265 (42%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------WLSYIKF 62
+DR+V SP LW Y+ + AR + ER + + E W++ +
Sbjct: 1611 FDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1670
Query: 63 KLRYNEVQRARHIFERLVQCHPYN--LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ Y + +FER VQ YN L +++ AD K + A +Y ++ F +
Sbjct: 1671 ENMYGSQESLTKVFERAVQ---YNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQE 1727
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ ++V + F + + R + + AL+ +PK D+ KF E Q GD
Sbjct: 1728 -----KAVWVKYGAFLLRRGKAEASHR---VMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVPP 239
E + R +E + P D W YI + + G+Q+ R ++ER I ++ P
Sbjct: 1780 AE--------RARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAP 1831
Query: 240 AEEKRYWQRYIYLWINYALYKEVDA 264
K +++RY+ + K+V A
Sbjct: 1832 KRMKFFFKRYLDYEKQHGSEKDVQA 1856
Score = 126 (49.4 bits), Expect = 0.00033, P = 0.00032
Identities = 59/246 (23%), Positives = 110/246 (44%)
Query: 28 RMEENL---GNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCH 83
R+EE L G + + F+R + P WL Y+ F L+ E+++AR + ER ++
Sbjct: 1593 RIEEALMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTI 1652
Query: 84 PYN-----LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
+ L+ W+ + E G + V+E AV+ ++E ++F+ A ++
Sbjct: 1653 SFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQ------YNEPLKVFLHLA---DI 1703
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
++ A +Y L R + +A ++ K+ AF R G +A M+ E
Sbjct: 1704 YTKSEKFQEAGELYNRMLKRFRQEKA--VWVKYGAFLL----RRGKAEASHRVMQRALEC 1757
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
+K + D + +LE ++G+ ER R ++E ++ P + W YI + I +
Sbjct: 1758 LPKKE--HVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTD--VWSVYIDMIIKHGS 1813
Query: 259 YKEVDA 264
KE A
Sbjct: 1814 QKEARA 1819
Score = 124 (48.7 bits), Expect = 0.00054, P = 0.00054
Identities = 46/241 (19%), Positives = 109/241 (45%)
Query: 2 IDHGRNAWDRVV-TLSPRVDQ----LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW 56
I+ R +R + T+S R +Q +W + +E G+ ++FER + + + +
Sbjct: 1638 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVF 1697
Query: 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
L + + Q A ++ R+++ + W+ + F ++ G+ + + V + A+E
Sbjct: 1698 LHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALEC 1757
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
+H + AKF ++ + +RAR I++ L PK D++ ++
Sbjct: 1758 LPKKEHVDV------IAKFAQLEFQLGDAERARAIFESTLSIYPK--RTDVWSVYIDMII 1809
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
++G ++ AI ++ + ++ + + DY E++ G+++ V+ V +A+
Sbjct: 1810 KHGSQKEAR-AIFERV-IHLSLAPKRMKFFFKRYLDY---EKQHGSEKDVQAVKAKALEY 1864
Query: 237 V 237
V
Sbjct: 1865 V 1865
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 169 (64.5 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 64/265 (24%), Positives = 113/265 (42%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------WLSYIKF 62
+DR+V SP LW Y+ + AR + ER + + E W++ +
Sbjct: 1611 FDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1670
Query: 63 KLRYNEVQRARHIFERLVQCHPYN--LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ Y + +FER VQ YN L +++ AD K + A +Y ++ F +
Sbjct: 1671 ENMYGSQESLTKVFERAVQ---YNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQE 1727
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ ++V + F + + R + + AL+ +PK D+ KF E Q GD
Sbjct: 1728 -----KAVWVKYGAFLLRRGKAEASHR---VMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVPP 239
E + R +E + P D W YI + + G+Q+ R ++ER I ++ P
Sbjct: 1780 AE--------RARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAP 1831
Query: 240 AEEKRYWQRYIYLWINYALYKEVDA 264
K +++RY+ + K+V A
Sbjct: 1832 KRMKFFFKRYLDYEKQHGSEKDVQA 1856
Score = 126 (49.4 bits), Expect = 0.00033, P = 0.00032
Identities = 59/246 (23%), Positives = 110/246 (44%)
Query: 28 RMEENL---GNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCH 83
R+EE L G + + F+R + P WL Y+ F L+ E+++AR + ER ++
Sbjct: 1593 RIEEALMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTI 1652
Query: 84 PYN-----LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
+ L+ W+ + E G + V+E AV+ ++E ++F+ A ++
Sbjct: 1653 SFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQ------YNEPLKVFLHLA---DI 1703
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
++ A +Y L R + +A ++ K+ AF R G +A M+ E
Sbjct: 1704 YTKSEKFQEAGELYNRMLKRFRQEKA--VWVKYGAFLL----RRGKAEASHRVMQRALEC 1757
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
+K + D + +LE ++G+ ER R ++E ++ P + W YI + I +
Sbjct: 1758 LPKKE--HVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTD--VWSVYIDMIIKHGS 1813
Query: 259 YKEVDA 264
KE A
Sbjct: 1814 QKEARA 1819
Score = 124 (48.7 bits), Expect = 0.00054, P = 0.00054
Identities = 46/241 (19%), Positives = 109/241 (45%)
Query: 2 IDHGRNAWDRVV-TLSPRVDQ----LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW 56
I+ R +R + T+S R +Q +W + +E G+ ++FER + + + +
Sbjct: 1638 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVF 1697
Query: 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
L + + Q A ++ R+++ + W+ + F ++ G+ + + V + A+E
Sbjct: 1698 LHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALEC 1757
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
+H + AKF ++ + +RAR I++ L PK D++ ++
Sbjct: 1758 LPKKEHVDV------IAKFAQLEFQLGDAERARAIFESTLSIYPK--RTDVWSVYIDMII 1809
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
++G ++ AI ++ + ++ + + DY E++ G+++ V+ V +A+
Sbjct: 1810 KHGSQKEAR-AIFERV-IHLSLAPKRMKFFFKRYLDY---EKQHGSEKDVQAVKAKALEY 1864
Query: 237 V 237
V
Sbjct: 1865 V 1865
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 166 (63.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 64/265 (24%), Positives = 117/265 (44%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------WLSYIKF 62
+DR+V SP LW Y+ + AR + ER + + E W++ +
Sbjct: 1599 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1658
Query: 63 KLRYNEVQRARHIFERLVQCHPYN--LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ Y + +FER VQ YN L +++ AD K + A +Y ++ F +
Sbjct: 1659 ENMYGSQESLTKVFERAVQ---YNEPLKVFLHLADIYTKSEKYKEAGELYNRMLKRFRQE 1715
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ +++ + F +G + + + + + AL+ +P D+ KF E Q GD
Sbjct: 1716 -----KAVWIKYGAFV-LGRS--QAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGD 1767
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVPP 239
E + AI +E+ + P D W YI + + G+Q VR+++ER I ++ P
Sbjct: 1768 VERAK-AI-------FENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLSLAP 1819
Query: 240 AEEKRYWQRYIYLWINYALYKEVDA 264
K +++RY+ + K+V A
Sbjct: 1820 KRMKFFFKRYLDYEKQHGTEKDVQA 1844
Score = 126 (49.4 bits), Expect = 0.00032, P = 0.00032
Identities = 47/242 (19%), Positives = 108/242 (44%)
Query: 2 IDHGRNAWDRVV-TLSPRVDQ----LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW 56
I+ R +R + T+S R +Q +W + +E G+ ++FER + + + +
Sbjct: 1626 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVF 1685
Query: 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
L + + + A ++ R+++ + WI + F + + + V + A+E
Sbjct: 1686 LHLADIYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALEC 1745
Query: 117 FLADDHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175
A +H + + V FA+ E ++G + +RA+ I++ L PK D++ ++
Sbjct: 1746 LPAKEHVD---VIVKFAQLEFQLG----DVERAKAIFENTLSTYPK--RTDVWSVYIDMT 1796
Query: 176 KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIA 235
++G + + D + L ++ + + DY E++ G ++ V+ V +A+
Sbjct: 1797 IKHGSQTAVRDIFERVIHLSLAP--KRMKFFFKRYLDY---EKQHGTEKDVQAVKAKALE 1851
Query: 236 NV 237
V
Sbjct: 1852 YV 1853
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 166 (63.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 63/265 (23%), Positives = 115/265 (43%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------WLSYIKF 62
+DR++ SP LW Y+ + AR + ER + + E W++ +
Sbjct: 1607 FDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1666
Query: 63 KLRYNEVQRARHIFERLVQCHPYN--LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ Y + +FER VQ YN L +++ AD K + A +Y ++ F +
Sbjct: 1667 ENMYGSQESLTKVFERAVQ---YNEPLKVFLHLADIYNKSEKFQEAGELYNRMLKRFRQE 1723
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ +++ + F + R + + AL+ +P D+ KF E Q GD
Sbjct: 1724 -----KAVWIKYGAFLLRRGQAGASHR---VMQRALECLPNKEHVDVIAKFAQLEFQLGD 1775
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVPP 239
E + AI +E+ + P D W YI + + G+Q+ VR+++ER I ++ P
Sbjct: 1776 AERAK-AI-------FENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAP 1827
Query: 240 AEEKRYWQRYIYLWINYALYKEVDA 264
K +++RY+ + K+V A
Sbjct: 1828 KRMKFFFKRYLDYEKQHGTEKDVQA 1852
Score = 130 (50.8 bits), Expect = 0.00012, P = 0.00012
Identities = 46/241 (19%), Positives = 106/241 (43%)
Query: 2 IDHGRNAWDRVV-TLSPRVDQ----LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW 56
I+ R +R + T+S R +Q +W + +E G+ ++FER + + + +
Sbjct: 1634 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVF 1693
Query: 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
L + + Q A ++ R+++ + WI + F ++ G+ + V + A+E
Sbjct: 1694 LHLADIYNKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALEC 1753
Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
+H + AKF ++ + +RA+ I++ L PK D++ ++
Sbjct: 1754 LPNKEHVDV------IAKFAQLEFQLGDAERAKAIFENTLSTYPK--RTDVWSVYIDMTI 1805
Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
++G ++ + D + L ++ + + DY E++ G ++ V+ V +A+
Sbjct: 1806 KHGSQKEVRDIFERVIHLSLAP--KRMKFFFKRYLDY---EKQHGTEKDVQAVKAKALEY 1860
Query: 237 V 237
V
Sbjct: 1861 V 1861
Score = 129 (50.5 bits), Expect = 0.00015, P = 0.00015
Identities = 57/244 (23%), Positives = 107/244 (43%)
Query: 28 RMEENL---GNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCH 83
R+EE L G + F+R + P+ WL Y+ F L+ E+++AR + ER ++
Sbjct: 1589 RIEEALMDPGRQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI 1648
Query: 84 PYN-----LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
+ L+ W+ + E G + V+E AV+ ++E ++F+ A
Sbjct: 1649 SFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQ------YNEPLKVFLHLADIYNK 1702
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198
+E +Y L R + +A ++ K+ AF + G + G + M+ E
Sbjct: 1703 SEKFQEAGE---LYNRMLKRFRQEKA--VWIKYGAFLLRRG-QAGASHRV---MQRALE- 1752
Query: 199 GVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258
N + D + +LE ++G+ ER + ++E ++ P + W YI + I +
Sbjct: 1753 -CLPNKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD--VWSVYIDMTIKHGS 1809
Query: 259 YKEV 262
KEV
Sbjct: 1810 QKEV 1813
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 158 (60.7 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 57/252 (22%), Positives = 112/252 (44%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH---WMPDHEG---WLSYIKF 62
+DR+V SP LW Y+ + AR + ER + + + E W++ +
Sbjct: 1578 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVWVALLNL 1637
Query: 63 KLRYNEVQRARHIFERLVQCHPYN--LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
+ Y + +FER VQ YN L + + D + +A +Y + F +
Sbjct: 1638 ENMYGTEETLMKVFERAVQ---YNEPLKVFQHLCDIYASSEKYKQAEELYHTMLRRFRQE 1694
Query: 121 DHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179
+ +++ +A F + G +T+ + + AL +P D+ +F E ++G
Sbjct: 1695 -----KSVWLKYASFLLKQG----QTEATHRLLERALKALPTKEHVDVISRFAQLEFRFG 1745
Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVP 238
D E + A+ +E + P D W Y+ + + G+Q+ +R+++ER I N+
Sbjct: 1746 DPEHAK-AL-------FESTLNSYPKRTDIWSIYMDIMIKQGSQKEIRDIFERVIHLNLA 1797
Query: 239 PAEEKRYWQRYI 250
P + K +++RY+
Sbjct: 1798 PKKMKFFFKRYL 1809
>WB|WBGene00016837 [details] [associations]
symbol:C50F2.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0005622
GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10 InterPro:IPR013105
Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 GeneTree:ENSGT00550000075140 EMBL:FO080915
PIR:T29775 RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 79/332 (23%), Positives = 139/332 (41%)
Query: 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS----AWINFADFEMKMGEVDRARNVYE 111
W+ K ++ AR FE V +S W +A+ EMK A V +
Sbjct: 404 WIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQ 463
Query: 112 CAVEIFLADDHDEAEQLF-------VAFAKFEEMGCNCKETDRARCIYKFALD-RIPKGR 163
A + D++ + + + +A + + C + R +Y ++ R+ +
Sbjct: 464 RACVVPKPGDYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQ 523
Query: 164 AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR--KNPMNYDTWFDY-IRLEERV 220
Y FL E +Y E A YE G+ K P +D W Y ++ +R
Sbjct: 524 MIMNYAMFLE-ENEY-----FELAFQA-----YEKGIALFKWPGVFDIWNTYLVKFIKRY 572
Query: 221 GNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF 278
G + ER R+++E+ + N PP K Y+++ YA +E + G +Y
Sbjct: 573 GGKKLERARDLFEQCLENCPPTHAK-------YIFLLYAKLEE-EHGLARHALSIYNRAC 624
Query: 279 IFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN-CYAWS-KYTELEK 336
S R + ++ YI+ + I CR ++E+ + PE+ A S +Y +LE
Sbjct: 625 ----SGVDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSLRYAQLET 680
Query: 337 SLDETERARAIFELA--IAQPILDLPEF-LWK 365
++ E +RARAI+ A I+ P + + + WK
Sbjct: 681 TVGEIDRARAIYAHAAEISDPKVHVKFWDTWK 712
>UNIPROTKB|P91175 [details] [associations]
symbol:C50F2.3 "Protein C50F2.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF13181 SMART:SM00386 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
GeneTree:ENSGT00550000075140 EMBL:FO080915 PIR:T29775
RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 79/332 (23%), Positives = 139/332 (41%)
Query: 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS----AWINFADFEMKMGEVDRARNVYE 111
W+ K ++ AR FE V +S W +A+ EMK A V +
Sbjct: 404 WIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQ 463
Query: 112 CAVEIFLADDHDEAEQLF-------VAFAKFEEMGCNCKETDRARCIYKFALD-RIPKGR 163
A + D++ + + + +A + + C + R +Y ++ R+ +
Sbjct: 464 RACVVPKPGDYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQ 523
Query: 164 AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR--KNPMNYDTWFDY-IRLEERV 220
Y FL E +Y E A YE G+ K P +D W Y ++ +R
Sbjct: 524 MIMNYAMFLE-ENEY-----FELAFQA-----YEKGIALFKWPGVFDIWNTYLVKFIKRY 572
Query: 221 GNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF 278
G + ER R+++E+ + N PP K Y+++ YA +E + G +Y
Sbjct: 573 GGKKLERARDLFEQCLENCPPTHAK-------YIFLLYAKLEE-EHGLARHALSIYNRAC 624
Query: 279 IFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN-CYAWS-KYTELEK 336
S R + ++ YI+ + I CR ++E+ + PE+ A S +Y +LE
Sbjct: 625 ----SGVDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSLRYAQLET 680
Query: 337 SLDETERARAIFELA--IAQPILDLPEF-LWK 365
++ E +RARAI+ A I+ P + + + WK
Sbjct: 681 TVGEIDRARAIYAHAAEISDPKVHVKFWDTWK 712
>POMBASE|SPBC6B1.07 [details] [associations]
symbol:prp1 "U4/U6 x U5 tri-snRNP complex subunit Prp1"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 SMART:SM00028 SMART:SM00386 PomBase:SPBC6B1.07
EMBL:CU329671 GenomeReviews:CU329671_GR eggNOG:COG0457
Gene3D:1.25.40.10 GO:GO:0046540 GO:GO:0045292 EMBL:D83659
EMBL:D83743 PIR:T45158 RefSeq:NP_596086.1 ProteinModelPortal:Q12381
IntAct:Q12381 STRING:Q12381 EnsemblFungi:SPBC6B1.07.1
GeneID:2541185 KEGG:spo:SPBC6B1.07 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY OrthoDB:EOG4D82F8 NextBio:20802297 InterPro:IPR027108
PANTHER:PTHR11246:SF1 Uniprot:Q12381
Length = 906
Score = 121 (47.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 10 DRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNE 68
++ V P+ + LW Y + +N+ ++AGAR I R + + E WL+ ++ + NE
Sbjct: 568 EKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNE 627
Query: 69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF 117
+RAR + R + W E + E DRA + E A++I+
Sbjct: 628 NERARKLLAR-ARIESGTERIWTKSISLERILDEKDRALQLLENALKIY 675
Score = 103 (41.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 61/249 (24%), Positives = 93/249 (37%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRME--ENLGNVAG-ARQIFERWMHWMPDHEGWLS 58
+D+ R R V L P LW R+E EN V ARQ HE W++
Sbjct: 386 VDNARILLARAVELIPMSIDLWLALARLETYENAKKVLNKARQTIRT------SHEVWIA 439
Query: 59 YIKFKLRYNEVQRARHIFERLV---QCHPYNLSA--WINFADFEMKMGEVDRARNVYECA 113
+ + + V R I R V Q L W++ A+ G V A+ +
Sbjct: 440 AARLEEQQGNVSRVEKIMARGVSELQATGGMLQRDQWLSEAEKCETEGAVITAQAIINTC 499
Query: 114 VEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA 173
+ + L D+ D+ + F C D AR ++ F+L PK +E L+ + +
Sbjct: 500 LGVGL-DEEDQFDTWLDDAQSFIARKC----IDCARAVFAFSLRVYPK--SEKLWLRAVE 552
Query: 174 FEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERA 233
EK YG E + + E V P W Y + + V + R + RA
Sbjct: 553 LEKLYGTTESVCSIL--------EKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRA 604
Query: 234 IANVPPAEE 242
+EE
Sbjct: 605 FEYNSNSEE 613
Score = 78 (32.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 191 KMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI 250
+ R+ ++ KNP N W + I++E R GN +VR +A+ P + W I
Sbjct: 730 RARVVFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKALQECPSSG--LLWTEAI 787
Query: 251 YL 252
+L
Sbjct: 788 WL 789
Score = 67 (28.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 267 LERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCY 326
LE + V R +F + + ++ + I+MEL GNI R K L+ P +
Sbjct: 722 LEEKQSVIRARVVFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKALQECPSSGL 781
Query: 327 AWSKYTELEKSLDETERA 344
W++ LE RA
Sbjct: 782 LWTEAIWLEPRAQRKTRA 799
Score = 49 (22.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 189 AGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV 229
A K R + V+ + N D W + + GN+++ +EV
Sbjct: 826 ADKARSWFLKAVKADQDNGDVWCWFYKYSLEAGNEDQQKEV 866
>UNIPROTKB|F6RY07 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 OMA:PRSYKLW
GeneTree:ENSGT00550000075140 EMBL:DAAA02019501 IPI:IPI00700985
Ensembl:ENSBTAT00000015097 Uniprot:F6RY07
Length = 855
Score = 137 (53.3 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 48/205 (23%), Positives = 92/205 (44%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMPDHEG 55
+ + A++R ++L P V +W+ Y+ + G + AR +FE+ + P
Sbjct: 533 YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA 592
Query: 56 WLSYIKFKLRYNEVQRARH---IFERLVQC-HPYNLSAWIN-FADFEMKMGEVDRARNVY 110
Y+ + E ARH ++ER + P N + ++ V R++Y
Sbjct: 593 KTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIY 652
Query: 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
+ A+E+ L+D+H A ++ + FA +M C E DRAR IY F ++
Sbjct: 653 QKAIEV-LSDEH--AREMCLRFA---DMECKLGEIDRARAIYSFCSQICDPRTTGAFWQT 706
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQ 195
+ FE ++G+ + I + + + +Q
Sbjct: 707 WKDFEVRHGNEDTIREMLRIRRSVQ 731
Score = 124 (48.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 60/239 (25%), Positives = 99/239 (41%)
Query: 80 VQCHPY-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
VQ Y +L W AD E +G + VY+ +++ +A Q+ + +A F E
Sbjct: 476 VQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA-----TPQIVINYAMFLEE 530
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYE 197
+E+ +A Y+ + D++ +L F +YG R+ +E A R +E
Sbjct: 531 HKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFE 581
Query: 198 DGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
+ P Y + Y +LEE G VYERA V PA++ Y N
Sbjct: 582 QALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ--------YDMFN 633
Query: 256 YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY 314
+ + + + TR +Y+ I S R + ++ +ME LG ID R +Y
Sbjct: 634 IYIKRAAEIYGVTHTRSIYQKA-IEVLSDE---HAREMCLRFADMECKLGEIDRARAIY 688
Score = 102 (41.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 43/160 (26%), Positives = 71/160 (44%)
Query: 196 YEDGVR--KNPMNYDTWFDYI-RLEERVGNQ--ERVREVYERAIANVPPAEEKRYWQRYI 250
YE G+ K P D W Y+ + R G + ER R+++E+A+ PP K + Y
Sbjct: 541 YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA 600
Query: 251 YLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPC 310
L + L + A TR V P ++ +F YI+ + +
Sbjct: 601 QLEEEWGLARHAMAVYERATRAV-----------EPA-QQYDMFNIYIKRAAEIYGVTHT 648
Query: 311 RKLYEKYLE-WSPENCYAWS-KYTELEKSLDETERARAIF 348
R +Y+K +E S E+ ++ ++E L E +RARAI+
Sbjct: 649 RSIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
Score = 79 (32.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 90 WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137
W + AD+ ++ G ++AR+VYE A+ + + Q+F ++A+FEE
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVR--DFTQVFDSYAQFEE 304
Score = 74 (31.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFK 63
N +R ++ +LW +Y + + G V R+ F+R + +P H W Y++F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFL 156
Query: 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102
+ + A + R ++ P + +I + ++ E
Sbjct: 157 RSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDE 195
Score = 73 (30.8 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 25/122 (20%), Positives = 48/122 (39%)
Query: 23 WNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYIKFKLRYNEVQRA--RHIFERL 79
W YI ++ Q++ER + +P ++ W Y+K + R R +E +
Sbjct: 38 WLRYIEFKQGAPKPR-LNQLYERALKLLPCSYKLWYRYLKAR-RAQVKHRCVTDPAYEDV 95
Query: 80 VQCHP------YNLSA-WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132
CH + + W+++ F M G V R ++ A+ H L++ F
Sbjct: 96 NNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRF 155
Query: 133 AK 134
+
Sbjct: 156 LR 157
>POMBASE|SPBC211.02c [details] [associations]
symbol:cwf3 "complexed with Cdc5 protein Cwf3"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0044732 "mitotic spindle
pole body" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IC] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPBC211.02c
GO:GO:0005829 GO:GO:0044732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0045292
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
OrthoDB:EOG4DBXP7 EMBL:AF251149 PIR:T50337 RefSeq:NP_596612.1
ProteinModelPortal:Q9P7R9 IntAct:Q9P7R9 STRING:Q9P7R9
EnsemblFungi:SPBC211.02c.1 GeneID:2540753 KEGG:spo:SPBC211.02c
NextBio:20801873 Uniprot:Q9P7R9
Length = 790
Score = 151 (58.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 64/239 (26%), Positives = 112/239 (46%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWM---HWMPDHEGWLS 58
I+ R +DRV L Q+ NY + E + +I+ER + + E W
Sbjct: 496 IETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGVALFSYPVAFELWNL 555
Query: 59 YI-KFKLRYN--EVQRARHIFERLVQ-CHP-YNLSAWINFADFEMKMGEVDRARNVYECA 113
Y+ KF RY ++R R +FE+ ++ C P ++ S ++ +ADFE K G+ R+ ++ E A
Sbjct: 556 YLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEEKFGKAKRSISILEKA 615
Query: 114 VEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA 173
AD A++L + ++ N R +Y+ A++ + +D+ +F
Sbjct: 616 -----ADKVKTADRLAIYNVLLVKVALNYGVL-ATRTVYEKAIESLSDSEVKDMCLRFAE 669
Query: 174 FEKQYGDREGIEDAIAGKMRLQYEDGVRK-NP-MNYDTWFDYIRLEERVGN-QERVREV 229
E + G+ I+ A RL Y G + +P + D W + E R GN +E V+E+
Sbjct: 670 METKLGE---IDRA-----RLIYIHGSQYCDPRVETDYWKAWQEFEIRYGNPEETVKEM 720
>UNIPROTKB|J9PAI6 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459
Ensembl:ENSCAFT00000044264 Uniprot:J9PAI6
Length = 799
Score = 136 (52.9 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 48/205 (23%), Positives = 91/205 (44%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMPDHEG 55
+ + A++R ++L P V +W+ Y+ + G + AR +FE+ + P
Sbjct: 533 YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA 592
Query: 56 WLSYIKFKLRYNEVQRARH---IFERLVQC-HPYNLSAWIN-FADFEMKMGEVDRARNVY 110
Y+ + E ARH ++ER + P N + ++ V R +Y
Sbjct: 593 KTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIY 652
Query: 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
+ A+E+ L+D+H A ++ + FA +M C E DRAR IY F ++
Sbjct: 653 QKAIEV-LSDEH--AREMCLRFA---DMECRLGEIDRARAIYSFCSQICDPRTTGAFWQT 706
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQ 195
+ FE ++G+ + I + + + +Q
Sbjct: 707 WKDFEVRHGNEDTIREMLRIRRSVQ 731
Score = 123 (48.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 60/239 (25%), Positives = 99/239 (41%)
Query: 80 VQCHPY-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
VQ Y +L W AD E +G + VY+ +++ +A Q+ + +A F E
Sbjct: 476 VQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA-----TPQIVINYAMFLEE 530
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYE 197
+E+ +A Y+ + D++ +L F +YG R+ +E A R +E
Sbjct: 531 HKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFE 581
Query: 198 DGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
+ P Y + Y +LEE G VYERA V PA++ Y N
Sbjct: 582 QALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ--------YDMFN 633
Query: 256 YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY 314
+ + + + TR +Y+ I S R + ++ +ME LG ID R +Y
Sbjct: 634 IYIKRAAEIYGVTHTRGIYQKA-IEVLSDE---HAREMCLRFADMECRLGEIDRARAIY 688
Score = 74 (31.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFK 63
N +R ++ +LW +Y + + G V R+ F+R + +P H W Y++F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFL 156
Query: 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102
+ + A + R ++ P + +I + ++ E
Sbjct: 157 RSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDE 195
>UNIPROTKB|F5H315 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0001824
EMBL:AC008763 HGNC:HGNC:14089 ChiTaRS:XAB2 IPI:IPI01015328
ProteinModelPortal:F5H315 SMR:F5H315 Ensembl:ENST00000534844
ArrayExpress:F5H315 Bgee:F5H315 Uniprot:F5H315
Length = 852
Score = 137 (53.3 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 48/205 (23%), Positives = 92/205 (44%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMPDHEG 55
+ + A++R ++L P V +W+ Y+ + G + AR +FE+ + P
Sbjct: 530 YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA 589
Query: 56 WLSYIKFKLRYNEVQRARH---IFERLVQC-HPYNLSAWIN-FADFEMKMGEVDRARNVY 110
Y+ + E ARH ++ER + P N + ++ V R +Y
Sbjct: 590 KTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIY 649
Query: 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
+ A+E+ L+D+H A ++ + FA +M C E DRAR IY F ++
Sbjct: 650 QKAIEV-LSDEH--AREMCLRFA---DMECKLGEIDRARAIYSFCSQICDPRTTGAFWQT 703
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQ 195
+ FE ++G+ + I++ + + +Q
Sbjct: 704 WKDFEVRHGNEDTIKEMLRIRRSVQ 728
Score = 123 (48.4 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 60/239 (25%), Positives = 99/239 (41%)
Query: 80 VQCHPY-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
VQ Y +L W AD E +G + VY+ +++ +A Q+ + +A F E
Sbjct: 473 VQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA-----TPQIVINYAMFLEE 527
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYE 197
+E+ +A Y+ + D++ +L F +YG R+ +E A R +E
Sbjct: 528 HKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFE 578
Query: 198 DGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
+ P Y + Y +LEE G VYERA V PA++ Y N
Sbjct: 579 QALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ--------YDMFN 630
Query: 256 YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY 314
+ + + + TR +Y+ I S R + ++ +ME LG ID R +Y
Sbjct: 631 IYIKRAAEIYGVTHTRGIYQKA-IEVLSDE---HAREMCLRFADMECKLGEIDRARAIY 685
Score = 119 (46.9 bits), Expect = 0.00076, P = 0.00076
Identities = 55/229 (24%), Positives = 97/229 (42%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH---WMPDHEGWLSYI-KFKL 64
+DR++ L Q+ NY E + + +ER + W + W +Y+ KF
Sbjct: 504 YDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIA 563
Query: 65 RYN--EVQRARHIFERLVQ-CHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
RY +++RAR +FE+ + C P Y + ++ +A E + G A VYE A
Sbjct: 564 RYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAV--- 620
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
E Q + F + + R IY+ A++ + A ++ +F E + G+
Sbjct: 621 ---EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGE 677
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV 229
I+ A A R + TW D+ E R GN++ ++E+
Sbjct: 678 ---IDRARAIYSFCSQICDPRTTGAFWQTWKDF---EVRHGNEDTIKEM 720
Score = 96 (38.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 69/297 (23%), Positives = 124/297 (41%)
Query: 90 WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRAR 149
W + AD+ ++ G ++AR+VYE A+ + + Q+F ++A+FEE K + A
Sbjct: 256 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVR--DFTQVFDSYAQFEESMIAAK-METAS 312
Query: 150 CIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209
+ + D + DL + FE+ R + +++ +R+NP +
Sbjct: 313 ELGREEEDDV------DLELRLARFEQLISRRPLLLNSVL----------LRQNPHHVHE 356
Query: 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269
W + L + G + Y A+ V P K + + LW+ +A + E D G L+
Sbjct: 357 WHKRVALHQ--GRPREIINTYTEAVQTVDPF--KATGKPHT-LWVAFAKFYE-DNGQLDD 410
Query: 270 TRDVYRTLFIFYF-------SFSPRMEERRI-FKKYIEMELCLGNID--PCRKLYEKYLE 319
R + F S + E + + Y E L P R+ +Y +
Sbjct: 411 ARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRA--EYFD 468
Query: 320 WS-P-EN-CY----AWSKYTELEKSLDETERARAIFE----LAIAQP--ILDLPEFL 363
S P +N Y WS +LE+SL + +A+++ L IA P +++ FL
Sbjct: 469 GSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFL 525
Score = 74 (31.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFK 63
N +R ++ +LW +Y + + G V R+ F+R + +P H W Y++F
Sbjct: 94 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFL 153
Query: 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102
+ + A + R ++ P + +I + ++ E
Sbjct: 154 RSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDE 192
>UNIPROTKB|Q9HCS7 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IC] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 SMART:SM00386 GO:GO:0005654 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 EMBL:AB026111
EMBL:AF226051 EMBL:AF258567 EMBL:AF547265 EMBL:BC007208
EMBL:BC008778 EMBL:AK074035 EMBL:AB033003 IPI:IPI00163084
RefSeq:NP_064581.2 UniGene:Hs.9822 ProteinModelPortal:Q9HCS7
SMR:Q9HCS7 IntAct:Q9HCS7 MINT:MINT-1475513 STRING:Q9HCS7
PhosphoSite:Q9HCS7 DMDM:25091548 PaxDb:Q9HCS7 PeptideAtlas:Q9HCS7
PRIDE:Q9HCS7 DNASU:56949 Ensembl:ENST00000358368 GeneID:56949
KEGG:hsa:56949 UCSC:uc002mgx.3 CTD:56949 GeneCards:GC19M007684
HGNC:HGNC:14089 MIM:610850 neXtProt:NX_Q9HCS7 PharmGKB:PA134905925
HOVERGEN:HBG024066 InParanoid:Q9HCS7 OrthoDB:EOG4G4GPQ ChiTaRS:XAB2
GenomeRNAi:56949 NextBio:62545 ArrayExpress:Q9HCS7 Bgee:Q9HCS7
CleanEx:HS_XAB2 Genevestigator:Q9HCS7 GermOnline:ENSG00000076924
Uniprot:Q9HCS7
Length = 855
Score = 137 (53.3 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 48/205 (23%), Positives = 92/205 (44%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMPDHEG 55
+ + A++R ++L P V +W+ Y+ + G + AR +FE+ + P
Sbjct: 533 YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA 592
Query: 56 WLSYIKFKLRYNEVQRARH---IFERLVQC-HPYNLSAWIN-FADFEMKMGEVDRARNVY 110
Y+ + E ARH ++ER + P N + ++ V R +Y
Sbjct: 593 KTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIY 652
Query: 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
+ A+E+ L+D+H A ++ + FA +M C E DRAR IY F ++
Sbjct: 653 QKAIEV-LSDEH--AREMCLRFA---DMECKLGEIDRARAIYSFCSQICDPRTTGAFWQT 706
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQ 195
+ FE ++G+ + I++ + + +Q
Sbjct: 707 WKDFEVRHGNEDTIKEMLRIRRSVQ 731
Score = 123 (48.4 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 60/239 (25%), Positives = 99/239 (41%)
Query: 80 VQCHPY-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
VQ Y +L W AD E +G + VY+ +++ +A Q+ + +A F E
Sbjct: 476 VQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA-----TPQIVINYAMFLEE 530
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYE 197
+E+ +A Y+ + D++ +L F +YG R+ +E A R +E
Sbjct: 531 HKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFE 581
Query: 198 DGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
+ P Y + Y +LEE G VYERA V PA++ Y N
Sbjct: 582 QALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ--------YDMFN 633
Query: 256 YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY 314
+ + + + TR +Y+ I S R + ++ +ME LG ID R +Y
Sbjct: 634 IYIKRAAEIYGVTHTRGIYQKA-IEVLSDE---HAREMCLRFADMECKLGEIDRARAIY 688
Score = 119 (46.9 bits), Expect = 0.00076, P = 0.00076
Identities = 55/229 (24%), Positives = 97/229 (42%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH---WMPDHEGWLSYI-KFKL 64
+DR++ L Q+ NY E + + +ER + W + W +Y+ KF
Sbjct: 507 YDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIA 566
Query: 65 RYN--EVQRARHIFERLVQ-CHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
RY +++RAR +FE+ + C P Y + ++ +A E + G A VYE A
Sbjct: 567 RYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAV--- 623
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
E Q + F + + R IY+ A++ + A ++ +F E + G+
Sbjct: 624 ---EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGE 680
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV 229
I+ A A R + TW D+ E R GN++ ++E+
Sbjct: 681 ---IDRARAIYSFCSQICDPRTTGAFWQTWKDF---EVRHGNEDTIKEM 723
Score = 96 (38.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 69/297 (23%), Positives = 124/297 (41%)
Query: 90 WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRAR 149
W + AD+ ++ G ++AR+VYE A+ + + Q+F ++A+FEE K + A
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVR--DFTQVFDSYAQFEESMIAAK-METAS 315
Query: 150 CIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209
+ + D + DL + FE+ R + +++ +R+NP +
Sbjct: 316 ELGREEEDDV------DLELRLARFEQLISRRPLLLNSVL----------LRQNPHHVHE 359
Query: 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269
W + L + G + Y A+ V P K + + LW+ +A + E D G L+
Sbjct: 360 WHKRVALHQ--GRPREIINTYTEAVQTVDPF--KATGKPHT-LWVAFAKFYE-DNGQLDD 413
Query: 270 TRDVYRTLFIFYF-------SFSPRMEERRI-FKKYIEMELCLGNID--PCRKLYEKYLE 319
R + F S + E + + Y E L P R+ +Y +
Sbjct: 414 ARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRA--EYFD 471
Query: 320 WS-P-EN-CY----AWSKYTELEKSLDETERARAIFE----LAIAQP--ILDLPEFL 363
S P +N Y WS +LE+SL + +A+++ L IA P +++ FL
Sbjct: 472 GSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFL 528
Score = 74 (31.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFK 63
N +R ++ +LW +Y + + G V R+ F+R + +P H W Y++F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFL 156
Query: 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102
+ + A + R ++ P + +I + ++ E
Sbjct: 157 RSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDE 195
>UNIPROTKB|E2RPV4 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0006351 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 KO:K12867 CTD:56949
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459 RefSeq:XP_542113.3
ProteinModelPortal:E2RPV4 Ensembl:ENSCAFT00000029071 GeneID:484995
KEGG:cfa:484995 OMA:RRYLMYD NextBio:20859059 Uniprot:E2RPV4
Length = 855
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 48/205 (23%), Positives = 91/205 (44%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMPDHEG 55
+ + A++R ++L P V +W+ Y+ + G + AR +FE+ + P
Sbjct: 533 YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA 592
Query: 56 WLSYIKFKLRYNEVQRARH---IFERLVQC-HPYNLSAWIN-FADFEMKMGEVDRARNVY 110
Y+ + E ARH ++ER + P N + ++ V R +Y
Sbjct: 593 KTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIY 652
Query: 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
+ A+E+ L+D+H A ++ + FA +M C E DRAR IY F ++
Sbjct: 653 QKAIEV-LSDEH--AREMCLRFA---DMECRLGEIDRARAIYSFCSQICDPRTTGAFWQT 706
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQ 195
+ FE ++G+ + I + + + +Q
Sbjct: 707 WKDFEVRHGNEDTIREMLRIRRSVQ 731
Score = 123 (48.4 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 60/239 (25%), Positives = 99/239 (41%)
Query: 80 VQCHPY-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
VQ Y +L W AD E +G + VY+ +++ +A Q+ + +A F E
Sbjct: 476 VQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA-----TPQIVINYAMFLEE 530
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYE 197
+E+ +A Y+ + D++ +L F +YG R+ +E A R +E
Sbjct: 531 HKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFE 581
Query: 198 DGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
+ P Y + Y +LEE G VYERA V PA++ Y N
Sbjct: 582 QALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ--------YDMFN 633
Query: 256 YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY 314
+ + + + TR +Y+ I S R + ++ +ME LG ID R +Y
Sbjct: 634 IYIKRAAEIYGVTHTRGIYQKA-IEVLSDE---HAREMCLRFADMECRLGEIDRARAIY 688
Score = 74 (31.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFK 63
N +R ++ +LW +Y + + G V R+ F+R + +P H W Y++F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFL 156
Query: 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102
+ + A + R ++ P + +I + ++ E
Sbjct: 157 RSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDE 195
>MGI|MGI:1914689 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10090 "Mus
musculus" [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 MGI:MGI:1914689 GO:GO:0008380 GO:GO:0006397
GO:GO:0006351 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 CTD:56949
HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ EMBL:AK002890 EMBL:AK008628
EMBL:BC021341 IPI:IPI00120744 RefSeq:NP_080432.1 UniGene:Mm.23739
ProteinModelPortal:Q9DCD2 SMR:Q9DCD2 STRING:Q9DCD2
PhosphoSite:Q9DCD2 PaxDb:Q9DCD2 PRIDE:Q9DCD2
Ensembl:ENSMUST00000019614 GeneID:67439 KEGG:mmu:67439
UCSC:uc009kry.1 GeneTree:ENSGT00550000075140 InParanoid:Q9DCD2
NextBio:324566 Bgee:Q9DCD2 CleanEx:MM_XAB2 Genevestigator:Q9DCD2
GermOnline:ENSMUSG00000019470 Uniprot:Q9DCD2
Length = 855
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 47/205 (22%), Positives = 91/205 (44%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMPDHEG 55
+ + A++R ++L P V +W+ Y+ + G + AR +FE+ + P
Sbjct: 533 YFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYA 592
Query: 56 WLSYIKFKLRYNEVQRARH---IFERLVQC-HPYNLSAWIN-FADFEMKMGEVDRARNVY 110
Y+ + E ARH +++R + P N + ++ V R +Y
Sbjct: 593 KTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIY 652
Query: 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
+ A+E+ L+D+H A ++ + FA +M C E DRAR IY F ++
Sbjct: 653 QKAIEV-LSDEH--AREMCLRFA---DMECKLGEIDRARAIYSFCSQICDPRTTGAFWQT 706
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQ 195
+ FE ++G+ + I + + + +Q
Sbjct: 707 WKDFEVRHGNEDTIREMLRIRRSVQ 731
Score = 121 (47.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 59/239 (24%), Positives = 99/239 (41%)
Query: 80 VQCHPY-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
VQ Y +L W AD E +G + VY+ +++ +A Q+ + +A F E
Sbjct: 476 VQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA-----TPQIVINYAMFLEE 530
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYE 197
+E+ +A Y+ + D++ +L F +YG R+ +E A R +E
Sbjct: 531 HKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFISRYGGRK-LERA-----RDLFE 581
Query: 198 DGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
+ P Y + Y +LEE G VY+RA V PA++ Y N
Sbjct: 582 QALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQ--------YDMFN 633
Query: 256 YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY 314
+ + + + TR +Y+ I S R + ++ +ME LG ID R +Y
Sbjct: 634 IYIKRAAEIYGVTHTRGIYQKA-IEVLSDE---HAREMCLRFADMECKLGEIDRARAIY 688
Score = 96 (38.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 69/297 (23%), Positives = 124/297 (41%)
Query: 90 WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRAR 149
W + AD+ ++ G ++AR+VYE A+ + + Q+F ++A+FEE K + A
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVR--DFTQVFDSYAQFEESMIAAK-METAS 315
Query: 150 CIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209
+ + D + DL + FE+ R + +++ +R+NP +
Sbjct: 316 ELGREEEDDV------DLELRLARFEQLISRRPLLLNSVL----------LRQNPHHVHE 359
Query: 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269
W + L + G + Y A+ V P K + + LW+ +A + E D G L+
Sbjct: 360 WHKRVALHQ--GRPREIINTYTEAVQTVDPF--KATGKPHT-LWVAFAKFYE-DNGQLDD 413
Query: 270 TRDVYRTLFIFYF-------SFSPRMEERRI-FKKYIEMELCLGNID--PCRKLYEKYLE 319
R + F S + E + + Y E L P R+ +Y +
Sbjct: 414 ARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRA--EYFD 471
Query: 320 WS-P-EN-CY----AWSKYTELEKSLDETERARAIFE----LAIAQP--ILDLPEFL 363
S P +N Y WS +LE+SL + +A+++ L IA P +++ FL
Sbjct: 472 GSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFL 528
Score = 74 (31.1 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFK 63
N +R ++ +LW +Y + + G V R+ F+R + +P H W Y++F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFL 156
Query: 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102
+ + A + R ++ P + +I + ++ E
Sbjct: 157 RSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDE 195
>RGD|621217 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10116 "Rattus
norvegicus" [GO:0001824 "blastocyst development" evidence=IEA;ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 RGD:621217 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 CTD:56949 HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ
GeneTree:ENSGT00550000075140 EMBL:AF277899 EMBL:BC081723
IPI:IPI00201089 RefSeq:NP_620809.1 UniGene:Rn.24921
ProteinModelPortal:Q99PK0 STRING:Q99PK0 Ensembl:ENSRNOT00000001309
GeneID:245976 KEGG:rno:245976 UCSC:RGD:621217 InParanoid:Q99PK0
NextBio:623254 Genevestigator:Q99PK0 GermOnline:ENSRNOG00000000988
Uniprot:Q99PK0
Length = 855
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 47/205 (22%), Positives = 91/205 (44%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMPDHEG 55
+ + A++R ++L P V +W+ Y+ + G + AR +FE+ + P
Sbjct: 533 YFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYA 592
Query: 56 WLSYIKFKLRYNEVQRARH---IFERLVQC-HPYNLSAWIN-FADFEMKMGEVDRARNVY 110
Y+ + E ARH +++R + P N + ++ V R +Y
Sbjct: 593 KTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIY 652
Query: 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
+ A+E+ L+D+H A ++ + FA +M C E DRAR IY F ++
Sbjct: 653 QKAIEV-LSDEH--AREMCLRFA---DMECKLGEIDRARAIYSFCSQICDPRTTGAFWQT 706
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQ 195
+ FE ++G+ + I + + + +Q
Sbjct: 707 WKDFEVRHGNEDTIREMLRIRRSVQ 731
Score = 121 (47.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 59/239 (24%), Positives = 99/239 (41%)
Query: 80 VQCHPY-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
VQ Y +L W AD E +G + VY+ +++ +A Q+ + +A F E
Sbjct: 476 VQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA-----TPQIVINYAMFLEE 530
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYE 197
+E+ +A Y+ + D++ +L F +YG R+ +E A R +E
Sbjct: 531 HKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFISRYGGRK-LERA-----RDLFE 581
Query: 198 DGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
+ P Y + Y +LEE G VY+RA V PA++ Y N
Sbjct: 582 QALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQ--------YDMFN 633
Query: 256 YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY 314
+ + + + TR +Y+ I S R + ++ +ME LG ID R +Y
Sbjct: 634 IYIKRAAEIYGVTHTRGIYQKA-IEVLSDE---HAREMCLRFADMECKLGEIDRARAIY 688
Score = 96 (38.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 69/297 (23%), Positives = 124/297 (41%)
Query: 90 WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRAR 149
W + AD+ ++ G ++AR+VYE A+ + + Q+F ++A+FEE K + A
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVR--DFTQVFDSYAQFEESMIAAK-METAS 315
Query: 150 CIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209
+ + D + DL + FE+ R + +++ +R+NP +
Sbjct: 316 ELGREEEDDV------DLELRLARFEQLISRRPLLLNSVL----------LRQNPHHVHE 359
Query: 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269
W + L + G + Y A+ V P K + + LW+ +A + E D G L+
Sbjct: 360 WHKRVALHQ--GRPREIINTYTEAVQTVDPF--KATGKPHT-LWVAFAKFYE-DNGQLDD 413
Query: 270 TRDVYRTLFIFYF-------SFSPRMEERRI-FKKYIEMELCLGNID--PCRKLYEKYLE 319
R + F S + E + + Y E L P R+ +Y +
Sbjct: 414 ARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRA--EYFD 471
Query: 320 WS-P-EN-CY----AWSKYTELEKSLDETERARAIFE----LAIAQP--ILDLPEFL 363
S P +N Y WS +LE+SL + +A+++ L IA P +++ FL
Sbjct: 472 GSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFL 528
Score = 74 (31.1 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFK 63
N +R ++ +LW +Y + + G V R+ F+R + +P H W Y++F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFL 156
Query: 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102
+ + A + R ++ P + +I + ++ E
Sbjct: 157 RSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDE 195
>UNIPROTKB|F1SCH5 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 KO:K12867 OMA:PRSYKLW
CTD:56949 GeneTree:ENSGT00550000075140 EMBL:CU929919
RefSeq:XP_003123199.1 UniGene:Ssc.48349 Ensembl:ENSSSCT00000014834
GeneID:100525328 KEGG:ssc:100525328 Uniprot:F1SCH5
Length = 855
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 48/205 (23%), Positives = 91/205 (44%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMPDHEG 55
+ + A++R ++L P V +W+ Y+ + G + AR +FE+ + P
Sbjct: 533 YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA 592
Query: 56 WLSYIKFKLRYNEVQRARH---IFERLVQC-HPYNLSAWIN-FADFEMKMGEVDRARNVY 110
Y+ + E ARH ++ER + P N + ++ V R +Y
Sbjct: 593 KTLYLLYAQLEEEWGLARHAMAVYERATRAVEPSQQYDMFNIYIKRAAEIYGVTHTRGIY 652
Query: 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170
+ A+E+ L+D+H A ++ + FA +M C E DRAR IY F ++
Sbjct: 653 QKAIEV-LSDEH--AREMCLRFA---DMECKLGEIDRARAIYSFCSQICDPRTTGAFWQT 706
Query: 171 FLAFEKQYGDREGIEDAIAGKMRLQ 195
+ FE ++G+ + I + + + +Q
Sbjct: 707 WKDFEVRHGNEDTIREMLRIRRSVQ 731
Score = 120 (47.3 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 59/239 (24%), Positives = 99/239 (41%)
Query: 80 VQCHPY-NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
VQ Y +L W AD E +G + VY+ +++ +A Q+ + +A F E
Sbjct: 476 VQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA-----TPQIVINYAMFLEE 530
Query: 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYE 197
+E+ +A Y+ + D++ +L F +YG R+ +E A R +E
Sbjct: 531 HKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFE 581
Query: 198 DGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
+ P Y + Y +LEE G VYERA V P+++ Y N
Sbjct: 582 QALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPSQQ--------YDMFN 633
Query: 256 YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY 314
+ + + + TR +Y+ I S R + ++ +ME LG ID R +Y
Sbjct: 634 IYIKRAAEIYGVTHTRGIYQKA-IEVLSDE---HAREMCLRFADMECKLGEIDRARAIY 688
Score = 74 (31.1 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFK 63
N +R ++ +LW +Y + + G V R+ F+R + +P H W Y++F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFL 156
Query: 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102
+ + A + R ++ P + +I + ++ E
Sbjct: 157 RSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDE 195
>ZFIN|ZDB-GENE-040426-685 [details] [associations]
symbol:xab2 "XPA binding protein 2" species:7955
"Danio rerio" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-685 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
HOVERGEN:HBG024066 EMBL:BC056771 IPI:IPI00614939 UniGene:Dr.12501
ProteinModelPortal:Q6PGZ8 STRING:Q6PGZ8 InParanoid:Q6PGZ8
ArrayExpress:Q6PGZ8 Uniprot:Q6PGZ8
Length = 851
Score = 147 (56.8 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 59/229 (25%), Positives = 101/229 (44%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWM---HWMPDHEGWLSYI-KFKL 64
+DR++ L Q+ NY E + + +ER + W H+ W +Y+ KF
Sbjct: 502 YDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGIALFKWPNVHDIWNTYLTKFID 561
Query: 65 RYN--EVQRARHIFERLVQCHP--YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
RY +++RAR +FE+ + P Y + ++ +A E + G A VYE A A
Sbjct: 562 RYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEEYGLARHAMAVYERATA---AV 618
Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
+ +E Q+F + K R IY+ A++ +P A D+ +F E + G+
Sbjct: 619 EAEERHQMFNIYIK---RAAEIYGVTHTRAIYQKAIEVLPDEHARDMCLRFADMESKLGE 675
Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV 229
I+ A A R + TW ++ E R GN++ +RE+
Sbjct: 676 ---IDRARAIYSYCSQICDPRVTAHFWQTWKEF---EIRHGNEDTIREM 718
Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 81/320 (25%), Positives = 141/320 (44%)
Query: 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY----NLSA-WINFADFEMKMGEVDRAR 107
H W+S+ KF ++ AR IFE+ + + Y +L+A W + + E++ D+A
Sbjct: 390 HSLWVSFAKFYEDNEQIDDARTIFEKATKVN-YKQVDDLAAVWCEYGEMELRHENYDQAS 448
Query: 108 NVYECAVEIFL--ADDHDEAEQL---FVAFAKFEEMGCNCKET----DRARCIYKFALD- 157
+ A I A+ D +E + K M + +E+ + +Y +D
Sbjct: 449 RILRKATAIPARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIIDL 508
Query: 158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR--KNPMNYDTWFDYI- 214
RI + Y FL E Y E++ YE G+ K P +D W Y+
Sbjct: 509 RIATPQIIINYAMFLE-EHNY-----FEESFKA-----YERGIALFKWPNVHDIWNTYLT 557
Query: 215 RLEERVGNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRD 272
+ +R G + ER R+++E+A+ P +Y + IYL YA +E + G
Sbjct: 558 KFIDRYGGKKLERARDLFEQALDGCPA----KY-AKTIYLL--YAKLEE-EYGLARHAMA 609
Query: 273 VYRTLFIFYFSFSPRMEER-RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS-- 329
VY + + EER ++F YI+ + + R +Y+K +E P+ +A
Sbjct: 610 VYERA-----TAAVEAEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDE-HARDMC 663
Query: 330 -KYTELEKSLDETERARAIF 348
++ ++E L E +RARAI+
Sbjct: 664 LRFADMESKLGEIDRARAIY 683
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 50/217 (23%), Positives = 93/217 (42%)
Query: 1 FIDHGRNAWDRVVTLS--PRVDQLWNNYI-RMEENLGN--VAGARQIFERWMHWMPDHEG 55
+ + A++R + L P V +WN Y+ + + G + AR +FE+ + P
Sbjct: 528 YFEESFKAYERGIALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYA 587
Query: 56 ---WLSYIKFKLRYNEVQRARHIFERLVQC-HPYNLSAWIN-FADFEMKMGEVDRARNVY 110
+L Y K + Y + A ++ER N + ++ V R +Y
Sbjct: 588 KTIYLLYAKLEEEYGLARHAMAVYERATAAVEAEERHQMFNIYIKRAAEIYGVTHTRAIY 647
Query: 111 ECAVEIFLADDHDEAEQLFVAFAKFE-EMGCNCKETDRARCIYKFALDRIPKGRAEDLYR 169
+ A+E+ L D+H A + + FA E ++G E DRAR IY + ++
Sbjct: 648 QKAIEV-LPDEH--ARDMCLRFADMESKLG----EIDRARAIYSYCSQICDPRVTAHFWQ 700
Query: 170 KFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN 206
+ FE ++G+ + I + + K +Q + N M+
Sbjct: 701 TWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMS 737
Score = 90 (36.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 49/189 (25%), Positives = 84/189 (44%)
Query: 200 VRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259
+R+NP N W ++L E G ++ Y A+ + P K + + LW+++A +
Sbjct: 345 LRQNPHNVHEWHKRVKLYE--GQPRQIINTYTEAVQTIDPM--KATGKPHS-LWVSFAKF 399
Query: 260 KEVDAGDLERTRDVYRTLF--IFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEK- 316
E D E+ D RT+F ++ + ++ +Y EMEL N D ++ K
Sbjct: 400 YE----DNEQIDDA-RTIFEKATKVNYKQVDDLAAVWCEYGEMELRHENYDQASRILRKA 454
Query: 317 ---------YLEWS-P-EN-CY----AWSKYTELEKSLDETERARAIFE----LAIAQP- 355
Y + S P +N Y WS +LE+SL + +A+++ L IA P
Sbjct: 455 TAIPARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQ 514
Query: 356 -ILDLPEFL 363
I++ FL
Sbjct: 515 IIINYAMFL 523
Score = 89 (36.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 70/295 (23%), Positives = 129/295 (43%)
Query: 79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE-IFLADDHDEAEQLFVAFAKFEE 137
L++ +P+N+ W ++ G+ + N Y AV+ I + L+V+FAKF E
Sbjct: 344 LLRQNPHNVHEW--HKRVKLYEGQPRQIINTYTEAVQTIDPMKATGKPHSLWVSFAKFYE 401
Query: 138 MGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDA--IAGKM--- 192
+ ++ D AR I++ A ++ + +DL + + + E + A I K
Sbjct: 402 ---DNEQIDDARTIFEKAT-KVNYKQVDDLAAVWCEYGEMELRHENYDQASRILRKATAI 457
Query: 193 ---RLQYEDGVR--KNPM--NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRY 245
+ +Y D +N + + W LEE +G + + VY+R I + R
Sbjct: 458 PARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRII-------DLRI 510
Query: 246 WQRYIYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERRIFKKYIE--MEL 302
I INYA++ E + E + Y R + +F + P + + I+ Y+ ++
Sbjct: 511 ATPQII--INYAMFLE-EHNYFEESFKAYERGIALFKW---PNVHD--IWNTYLTKFIDR 562
Query: 303 CLGN-IDPCRKLYEKYLEWSPENCYA---WSKYTELEKSLDETERARAIFELAIA 353
G ++ R L+E+ L+ P YA + Y +LE+ A A++E A A
Sbjct: 563 YGGKKLERARDLFEQALDGCPAK-YAKTIYLLYAKLEEEYGLARHAMAVYERATA 616
Score = 81 (33.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 21/103 (20%), Positives = 47/103 (45%)
Query: 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFK 63
N +R + ++ ++W +Y + + + +R+ F+R + +P H W Y++F
Sbjct: 92 NCHERALVFMHKMPRIWIDYCQFMVSQCKITRSRRTFDRALRALPITQHPRIWPLYLRFA 151
Query: 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRA 106
+ A ++ R ++ P N +I D+ +G +D A
Sbjct: 152 RNLPLPETAIRVYRRYLKLSPENAEEYI---DYLRSVGRLDEA 191
Score = 78 (32.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 90 WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137
W + AD+ ++ G ++AR+VYE A+ + + D Q+F ++A+FEE
Sbjct: 254 WCSMADYYIRSGHFEKARDVYEEAI-LTVVTVRDFT-QVFDSYAQFEE 299
Score = 77 (32.2 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 45/236 (19%), Positives = 98/236 (41%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYIKFKLRYN 67
++ + +P + W YI +++ + I+ER + +P ++ W +Y++ + +
Sbjct: 19 YEEEIIRNPYSVKCWMRYIEHKQS-AQKSVLNMIYERALKELPGSYKLWYNYLRERRKQV 77
Query: 68 EVQRARHI-FERLVQCHPYNL-------SAWINFADFEMKMGEVDRARNVYECAVEIFLA 119
+ + +E + CH L WI++ F + ++ R+R ++ A+
Sbjct: 78 KGKCITDPGYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCKITRSRRTFDRALRALPI 137
Query: 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179
H L++ FA+ N + A +Y+ L P+ AE+ ++ + + G
Sbjct: 138 TQHPRIWPLYLRFAR------NLPLPETAIRVYRRYLKLSPEN-AEE----YIDYLRSVG 186
Query: 180 DREGIEDAIAGKMRLQYEDGVRKN-PMNYDTWFDYIRLEERVGNQERVREVYERAI 234
+ E A+ + E+ V K NY W + L + N ++V + AI
Sbjct: 187 RLD--EAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQ--NPDKVTSLNVGAI 238
>TAIR|locus:2086132 [details] [associations]
symbol:HCF107 "high chlorophyll fluorescent 107"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;IMP]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0006417 "regulation
of translation" evidence=RCA;IMP] [GO:0009657 "plastid
organization" evidence=RCA;IMP] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005774 "vacuolar membrane" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 GO:GO:0005774 EMBL:CP002686 GO:GO:0006417
GO:GO:0009941 GO:GO:0006396 GO:GO:0009657 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 EMBL:AY093112 EMBL:BT008405
IPI:IPI00517465 RefSeq:NP_188329.1 UniGene:At.22706
ProteinModelPortal:Q8RWG2 SMR:Q8RWG2 STRING:Q8RWG2 PaxDb:Q8RWG2
PRIDE:Q8RWG2 EnsemblPlants:AT3G17040.1 GeneID:820961
KEGG:ath:AT3G17040 TAIR:At3g17040 eggNOG:NOG300398
InParanoid:Q8RWG2 OMA:MEWKEGN PhylomeDB:Q8RWG2
ProtClustDB:CLSN2684191 ArrayExpress:Q8RWG2 Genevestigator:Q8RWG2
Uniprot:Q8RWG2
Length = 652
Score = 103 (41.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 27/109 (24%), Positives = 49/109 (44%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFER-WMHWMPDHEGWLSYI 60
I RN + + R + ++ +E G AR +F++ + WL++
Sbjct: 287 ISKARNLLAKGLKFCGRNEYIYQTLALLEAKAGRYEQARYLFKQATICNSRSCASWLAWA 346
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNV 109
+ +++ AR +FE+ VQ P N AW + FE +G V+R R +
Sbjct: 347 QLEIQQERYPAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKL 395
Score = 101 (40.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 21/115 (18%), Positives = 55/115 (47%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYI 60
+ R +D + W+ + +E GN++ AR + + + + +E + +
Sbjct: 253 VRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLA 312
Query: 61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE 115
+ + ++AR++F++ C+ + ++W+ +A E++ AR ++E AV+
Sbjct: 313 LLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQ 367
Score = 90 (36.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 36 VAGARQIFERWMHWMPDHEG--WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF 93
+A AR ++E+ W + + R V+RAR +F+ +++AW +
Sbjct: 218 LAEARILYEKGCQSTQGENSYIWQCWAVLENRLGNVRRARELFDAATVADKKHVAAWHGW 277
Query: 94 ADFEMKMGEVDRARNV 109
A+ E+K G + +ARN+
Sbjct: 278 ANLEIKQGNISKARNL 293
Score = 87 (35.7 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 31/129 (24%), Positives = 57/129 (44%)
Query: 230 YERAIANVPPAEEKRYWQ---RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
Y+ + AN+ A +R + R+ +WI + + E G+ R++Y+ S
Sbjct: 418 YKHSSANLARALLRRASELDPRHQPVWIAWG-WMEWKEGNTTTARELYQRAL----SIDA 472
Query: 287 RMEER-RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERAR 345
E R + + +E GN+ R+L+ L + ++ W + +LE+ +TERA
Sbjct: 473 NTESASRCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAE 532
Query: 346 AIFELAIAQ 354
I L Q
Sbjct: 533 EIRNLYFQQ 541
Score = 87 (35.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 32/143 (22%), Positives = 64/143 (44%)
Query: 22 LWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLV 80
+W + +E LGNV AR++F+ H W + +++ + +AR++ + +
Sbjct: 239 IWQCWAVLENRLGNVRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGL 298
Query: 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGC 140
+ N + A E K G ++AR +++ A + + A L A+A+ E
Sbjct: 299 KFCGRNEYIYQTLALLEAKAGRYEQARYLFKQAT---ICNSRSCASWL--AWAQLE---I 350
Query: 141 NCKETDRARCIYKFALDRIPKGR 163
+ AR +++ A+ PK R
Sbjct: 351 QQERYPAARKLFEKAVQASPKNR 373
Score = 76 (31.8 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 49/212 (23%), Positives = 91/212 (42%)
Query: 39 ARQIFERWM-HWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQC-HPYNLSAWINFADF 96
A +I E+ + +W D +++ K + +++ AR ++E+ Q N W +A
Sbjct: 187 AEKILEKCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVL 246
Query: 97 EMKMGEVDRARNVYECAV---EIFLADDHD----EAEQLFVAFAKFEEMGCNCKETDRAR 149
E ++G V RAR +++ A + +A H E +Q ++ A+ + K R
Sbjct: 247 ENRLGNVRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKAR-NLLAKGLKFCGRNE 305
Query: 150 CIYK-FALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIA-GKMRLQ----------YE 197
IY+ AL GR E ++L + + +A ++ +Q +E
Sbjct: 306 YIYQTLALLEAKAGRYEQA--RYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFE 363
Query: 198 DGVRKNPMNYDTWFDYIRLEERVGNQERVREV 229
V+ +P N W + E VGN ER R++
Sbjct: 364 KAVQASPKNRFAWHVWGVFEAGVGNVERGRKL 395
Score = 63 (27.2 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 216 LEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR 275
LE+R GN R ++ R+ N+ Q Y+ W+ +A +E D GD ER ++ R
Sbjct: 487 LEQRAGNLSAARRLF-RSSLNINS-------QSYV-TWMTWAQLEE-DQGDTERAEEI-R 535
Query: 276 TLF 278
L+
Sbjct: 536 NLY 538
Score = 58 (25.5 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262
+P + W + +E + GN RE+Y+RA++ E R + W L E
Sbjct: 437 DPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESA---SRCLQAW--GVL--EQ 489
Query: 263 DAGDLERTRDVYRT 276
AG+L R ++R+
Sbjct: 490 RAGNLSAARRLFRS 503
>ASPGD|ASPL0000046692 [details] [associations]
symbol:AN1635 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 EMBL:BN001307
GO:GO:0005622 GO:GO:0006396 eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AACD01000026 KO:K13217 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 RefSeq:XP_659239.1 ProteinModelPortal:Q5BCU5
EnsemblFungi:CADANIAT00008273 GeneID:2874721 KEGG:ani:AN1635.2
Uniprot:Q5BCU5
Length = 588
Score = 94 (38.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 29/109 (26%), Positives = 50/109 (45%)
Query: 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269
W Y+ EE G+ R++ +YER + +E +WQRY W++ KE D
Sbjct: 280 WRKYLDFEEAEGSYARIQFLYERCLVTCAHYDE--FWQRYAR-WMSAQPGKEEDV----- 331
Query: 270 TRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL 318
R++Y+ Y + R+ Y E E+C G + ++++E L
Sbjct: 332 -RNIYQRASYLYVPIAN--PATRLQYAYFE-EMC-GRVSVAKEIHEAIL 375
Score = 91 (37.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 27/120 (22%), Positives = 51/120 (42%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKL 64
RN +DR + P + W Y +E ++ A ++ER + + + W +Y FK
Sbjct: 60 RNVYDRFLAKFPLLFGYWKKYADLEFSITGTEAADMVYERGVASISSSVDLWTNYCTFKA 119
Query: 65 RYN-EVQRARHIFERLVQC-------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
+ + R +FER C HP+ W + ++E ++ D+ + +EI
Sbjct: 120 ETSHDTDIIRELFERGANCVGLDFLSHPF----WDKYIEYEERVEGYDKIFAILARVIEI 175
>ZFIN|ZDB-GENE-030616-420 [details] [associations]
symbol:prpf39 "PRP39 pre-mRNA processing factor 39
homolog (yeast)" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-030616-420 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
Gene3D:1.25.40.10 eggNOG:COG5107 EMBL:AL591492 EMBL:BC116540
IPI:IPI00481955 RefSeq:NP_001004520.1 UniGene:Dr.340
ProteinModelPortal:Q1JPZ7 STRING:Q1JPZ7 PRIDE:Q1JPZ7
Ensembl:ENSDART00000061672 GeneID:368864 KEGG:dre:368864 CTD:55015
GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 InParanoid:Q1JPZ7 KO:K13217 OMA:GWVYLLQ
OrthoDB:EOG49GKG9 NextBio:20813235 ArrayExpress:Q1JPZ7 Bgee:Q1JPZ7
Uniprot:Q1JPZ7
Length = 752
Score = 103 (41.3 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 39/153 (25%), Positives = 72/153 (47%)
Query: 11 RVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERW-MHWMPDHEGWLSYIKFKLRYNEV 69
+VV +P W ++ E ++ G+R+ F+ + +H+ + W Y + ++ +
Sbjct: 157 KVVEDNPEDFNGWVYLLQYVEQENHLLGSRKAFDAFFLHYPYCYGYWKKYADIERKHGYI 216
Query: 70 QRARHIFERLVQCHPYNLSAWINFADF-----EMKMGEVD-RARNVYECAVEIFLADDHD 123
Q A ++ R +Q P ++ W+++ F + GE + R R YE AV LA D
Sbjct: 217 QMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRASYEHAV---LACGTD 273
Query: 124 -EAEQLFVAFAKFE-EMGCNCKET---DRARCI 151
+++L+ A+ +E E G T DR CI
Sbjct: 274 FRSDRLWEAYIAWETEQGKLANVTAIYDRLLCI 306
Score = 98 (39.6 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 36/131 (27%), Positives = 61/131 (46%)
Query: 56 WLSYIKFKLRYNEVQRARHIFER-LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV 114
W Y+ F+L +R +FER L+ C Y WI +A + ++ + R++Y+ A
Sbjct: 431 WREYLDFELENGTPERVVVLFERCLIACALYE-EFWIKYAKY-LESYSTEAVRHIYKKAC 488
Query: 115 EIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174
+ L + L+ AF E+ G D AR I K +P G A R+ ++
Sbjct: 489 TVHLPKKPN-VHLLWAAFE--EQQG----SIDEARSILKAVEVSVP-GLAMVRLRR-VSL 539
Query: 175 EKQYGDREGIE 185
E+++G+ E E
Sbjct: 540 ERRHGNMEEAE 550
Score = 97 (39.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/130 (23%), Positives = 59/130 (45%)
Query: 52 DHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111
D GW+ +++ + N + +R F+ +PY W +AD E K G + A VY
Sbjct: 165 DFNGWVYLLQYVEQENHLLGSRKAFDAFFLHYPYCYGYWKKYADIERKHGYIQMADEVYR 224
Query: 112 CAVE-IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG-RAEDLYR 169
++ I L+ D ++ F + + + + R R Y+ A+ R++ L+
Sbjct: 225 RGLQAIPLSVD---LWLHYITFLRENQDTSDGEAESRIRASYEHAVLACGTDFRSDRLWE 281
Query: 170 KFLAFEKQYG 179
++A+E + G
Sbjct: 282 AYIAWETEQG 291
Score = 81 (33.6 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 41/178 (23%), Positives = 67/178 (37%)
Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
E + R E+ I K + + K +N W +Y+ E G ERV ++ER +
Sbjct: 400 EHEVSKRWAFEEGI--KRPYFHVKALEKTQLN--NWREYLDFELENGTPERVVVLFERCL 455
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
EE WI YA Y E + E R +Y+ + P + ++
Sbjct: 456 IACALYEE---------FWIKYAKYLE--SYSTEAVRHIYKKACTVHLPKKPNVH--LLW 502
Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI 352
+ E + G+ID R + + P + LE+ E A A+ + AI
Sbjct: 503 AAFEEQQ---GSIDEARSILKAVEVSVPGLAMVRLRRVSLERRHGNMEEAEALLQDAI 557
Score = 68 (29.0 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYIKFKL 64
R A+D P W Y +E G + A +++ R + +P + WL YI F L
Sbjct: 186 RKAFDAFFLHYPYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITF-L 244
Query: 65 RYNE 68
R N+
Sbjct: 245 RENQ 248
>DICTYBASE|DDB_G0277977 [details] [associations]
symbol:xab2 "TPR-like helical domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 dictyBase:DDB_G0277977 GO:GO:0005634 GO:GO:0008380
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006281
GO:GO:0006397 GO:GO:0006351 Gene3D:1.25.40.10 RefSeq:XP_642044.1
ProteinModelPortal:Q54Z08 STRING:Q54Z08 EnsemblProtists:DDB0233461
GeneID:8621256 KEGG:ddi:DDB_G0277977 eggNOG:NOG289100 KO:K12867
OMA:PRSYKLW ProtClustDB:CLSZ2729105 Uniprot:Q54Z08
Length = 850
Score = 138 (53.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 57/237 (24%), Positives = 116/237 (48%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIR-MEENLGNVAGARQIFERWMH----WMPDH--EGWLS 58
++ +++++ L Q+ N+ + +EEN +F+ + H ++ H + W++
Sbjct: 517 KSIYEKMIQLKVVTPQIILNFAKYLEEN----KYFEDMFKAYEHGVQLFLFPHVQDIWIT 572
Query: 59 YI-KFKLRYN--EVQRARHIFERLVQCHPYNLSA--WINFADFEMKMGEVDRARNVYECA 113
Y+ KF RY +++R R +FE+++ P S ++ +A+FE + G + VY+ A
Sbjct: 573 YLTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYLMYANFEEQYGLARHSMAVYDRA 632
Query: 114 VEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA 173
+ +D + L++ A E G N + R I+ A++++P D+ KF
Sbjct: 633 AKSVDKEDRFKMYLLYIHRAS-EFFGVN-----QTREIFSKAIEQLPDQYVRDMCLKFAD 686
Query: 174 FEKQYGDREGIEDA-IAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV 229
EK+YG+ + I G Q+ D R + ++TW D+ +L GN++ +E+
Sbjct: 687 MEKKYGEIDRARSIYIHGS---QFSDP-RTSMFYWNTWSDFEKLH---GNEDTFKEM 736
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 50/179 (27%), Positives = 84/179 (46%)
Query: 194 LQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVRE-VYERAIANVPPAEEKRYWQRYIYL 252
L YE+ V KNP + + W Y LE + G+ ++ R +YERAI +P + W +Y+ L
Sbjct: 32 LPYEEDVSKNPYSVNCWLRY--LEFKQGSPQKQRNYIYERAIRELP--RSYKIWHQYL-L 86
Query: 253 WINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK 312
A+ + LE + + TLF F +M RI+ +Y E + I RK
Sbjct: 87 ERTLAIRGKCI---LENSFEAVNTLFERSLVFLDKMP--RIWIEYCEFLMIQEKITLTRK 141
Query: 313 LYEKYLEWSP--ENCYAWSKYTE--LEKSLDETERARAIFELAIAQP--ILDLPEFLWK 365
+++ L P ++ W++YT+ L++S+ R QP + + E+L K
Sbjct: 142 TFDRALIALPVTQHYRIWNEYTKFILKRSIPSLTCIRVYKRYLKIQPEKVEEYIEYLIK 200
Score = 109 (43.4 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 48/186 (25%), Positives = 84/186 (45%)
Query: 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN--PMNYDTWFDYIR--LEERVGNQ-ERV 226
L F K + + ED M YE GV+ P D W Y+ ++ G + ER
Sbjct: 535 LNFAKYLEENKYFED-----MFKAYEHGVQLFLFPHVQDIWITYLTKFIQRYAGMKLERT 589
Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286
R+++E+ ++ VPP E I ++ YA ++E G + VY + S
Sbjct: 590 RDLFEQVLSKVPPKES-------IIFYLMYANFEE-QYGLARHSMAVYDRA-----AKSV 636
Query: 287 RMEER-RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS---KYTELEKSLDETE 342
E+R +++ YI ++ R+++ K +E P+ Y K+ ++EK E +
Sbjct: 637 DKEDRFKMYLLYIHRASEFFGVNQTREIFSKAIEQLPDQ-YVRDMCLKFADMEKKYGEID 695
Query: 343 RARAIF 348
RAR+I+
Sbjct: 696 RARSIY 701
Score = 66 (28.3 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARN-VYECAV 114
+E V +PY+++ W+ + +F K G + RN +YE A+
Sbjct: 34 YEEDVSKNPYSVNCWLRYLEF--KQGSPQKQRNYIYERAI 71
Score = 60 (26.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 22/107 (20%), Positives = 45/107 (42%)
Query: 6 RN-AWDRVVTLSPRVDQLWNNYIRMEENLG---------NVAGARQIFERWMHWMPDHEG 55
RN ++R + PR ++W+ Y+ +E L + +FER + ++
Sbjct: 63 RNYIYERAIRELPRSYKIWHQYL-LERTLAIRGKCILENSFEAVNTLFERSLVFLDKMPR 121
Query: 56 -WLSYIKFKLRYNEVQRARHIFERLVQCHPY--NLSAWINFADFEMK 99
W+ Y +F + ++ R F+R + P + W + F +K
Sbjct: 122 IWIEYCEFLMIQEKITLTRKTFDRALIALPVTQHYRIWNEYTKFILK 168
Score = 58 (25.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW 90
WL Y++FK + QR +I+ER ++ P + W
Sbjct: 48 WLRYLEFKQGSPQKQR-NYIYERAIRELPRSYKIW 81
>DICTYBASE|DDB_G0272374 [details] [associations]
symbol:prpf6 "pre-mRNA processing factor 6"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA;ISS] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=ISS] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF06424 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0272374
GenomeReviews:CM000151_GR eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AAFI02000008 GO:GO:0000398 GO:GO:0046540 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_645169.1
ProteinModelPortal:Q55A15 STRING:Q55A15 EnsemblProtists:DDB0233221
GeneID:8618341 KEGG:ddi:DDB_G0272374 InParanoid:Q55A15
ProtClustDB:CLSZ2729243 Uniprot:Q55A15
Length = 1014
Score = 113 (44.8 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 7 NA-WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKL 64
NA + ++++ P +W ++E+ G Q E+ P +E WL Y K K
Sbjct: 556 NAIYAHILSIFPTKKSVWLKVAQLEKQHGTKETLDQTLEKATQKCPQYENLWLMYAKEKW 615
Query: 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
+V +AR I + + +P + + W+ E +M E+ ARN+ + A EI
Sbjct: 616 ISGDVAKAREILAQAFKFNPGSENIWVAAVKIESEMNELRAARNLLKKAREI 667
Score = 71 (30.1 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 41/184 (22%), Positives = 78/184 (42%)
Query: 128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDA 187
+++ ++FE+ N +RAR + + A + P +D++ +F+ FE G+R+
Sbjct: 775 VWIEASRFEKRNQNF---NRARALLEQAKLKNPTD--DDIFLEFVRFEDSLGNRKQAATI 829
Query: 188 IAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQ 247
+A L G++ +P + W + I +E R + + + R N P + Q
Sbjct: 830 LA----L----GIQASPKSGKLWAELIAMEPRHSQRNKCVDALNRC--NNDPYV---FTQ 876
Query: 248 RYIYLWINYAL------YKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEME 301
W++ L Y+ V D + + F F P +++ I KK +E E
Sbjct: 877 VSKIFWMDGKLDKAKQWYQRVTT-TFPEFGDGWAYYYAFILKFEPENKDQ-ILKKCVEAE 934
Query: 302 LCLG 305
LG
Sbjct: 935 PNLG 938
Score = 62 (26.9 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 192 MRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242
+R Y++ K P N W + R E+R N R R + E+A P ++
Sbjct: 758 IRQTYKNATVKCPNNGSVWIEASRFEKRNQNFNRARALLEQAKLKNPTDDD 808
Score = 60 (26.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351
++ L +I+ R+ Y+ P N W + + EK RARA+ E A
Sbjct: 749 QISLTSIEIIRQTYKNATVKCPNNGSVWIEASRFEKRNQNFNRARALLEQA 799
Score = 44 (20.5 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 293 IFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELE 335
IF +++ E LGN + ++ SP++ W++ +E
Sbjct: 809 IFLEFVRFEDSLGNRKQAATILALGIQASPKSGKLWAELIAME 851
Score = 40 (19.1 bits), Expect = 8.8e-05, Sum P(3) = 8.8e-05
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 305 GNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL 357
G +D ++ Y++ PE W+ Y + + + + + A+P L
Sbjct: 885 GKLDKAKQWYQRVTTTFPEFGDGWAYYYAFILKFEPENKDQILKKCVEAEPNL 937
>ASPGD|ASPL0000052140 [details] [associations]
symbol:AN0111 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0008380 EMBL:BN001308
GO:GO:0006397 GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10
EMBL:AACD01000004 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
RefSeq:XP_657715.1 ProteinModelPortal:Q5BH69 STRING:Q5BH69
EnsemblFungi:CADANIAT00002638 GeneID:2875887 KEGG:ani:AN0111.2
HOGENOM:HOG000176133 OrthoDB:EOG4DBXP7 Uniprot:Q5BH69
Length = 851
Score = 129 (50.5 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 74/320 (23%), Positives = 142/320 (44%)
Query: 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-----LSAWINFADFEMKMGEVDRARN 108
E W++Y KF R ++ AR IFE+ V+ P+ W +A+ E++ D+A
Sbjct: 421 ELWVNYAKFYERGGDLDTARIIFEKAVKV-PFKSVNELAETWCEWAEMELRSENFDKAVE 479
Query: 109 VYECAVEI---FLADDHDEA-------EQLFVAFAKFEEMGCNCKETDRARCIYKFALD- 157
+ A + D DE + + ++ + ++ + + + +Y+ +
Sbjct: 480 IMAKATQAPKKSTVDYFDETLSPQQRIHKSWKLWSFYVDLVESVSSIEETKKVYERIFEL 539
Query: 158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR--KNPMNYDTWFDYIR 215
RI + Y L E +Y E++ K+ YE G+ P+ ++ W Y+
Sbjct: 540 RIATPQTVVNYANLLE-EHKY-----FEESF--KV---YERGLDLFTYPVAFELWNLYLT 588
Query: 216 --LEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDV 273
++ ++G ER+R+++E+A+ PP + R +YL +Y G+LE R +
Sbjct: 589 KAVDRKIGI-ERLRDLFEQALDGCPPK-----FARPLYL-----MY-----GNLEEERGL 632
Query: 274 YRTLFIFYFSFSPRM--EER-RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN--CYAW 328
R Y + + E+R +F+ YI + R +YE+ + P++
Sbjct: 633 ARHAMRIYERATRAVSDEDRFEMFEFYITKSASNFGLPSTRPIYERAIAALPDHEAKEMC 692
Query: 329 SKYTELEKSLDETERARAIF 348
K+ E+E+ L E +RARAI+
Sbjct: 693 LKFAEMERRLGEIDRARAIY 712
Score = 95 (38.5 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 42/168 (25%), Positives = 70/168 (41%)
Query: 200 VRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259
+R+NP N W + L N + Y AIA + P K+ ++ LW+NYA +
Sbjct: 375 LRQNPNNVIEWEKRVALWG--DNNVEIVNTYTAAIAAINP---KKAVGKFSELWVNYAKF 429
Query: 260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEK--- 316
E GDL+ R ++ F + E + ++ EMEL N D ++ K
Sbjct: 430 YE-RGGDLDTARIIFEKAVKVPFKSVNELAET--WCEWAEMELRSENFDKAVEIMAKATQ 486
Query: 317 --------YLE--WSPE-----NCYAWSKYTELEKSLDETERARAIFE 349
Y + SP+ + WS Y +L +S+ E + ++E
Sbjct: 487 APKKSTVDYFDETLSPQQRIHKSWKLWSFYVDLVESVSSIEETKKVYE 534
Score = 79 (32.9 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEG-WLSYIKFKLR 65
++R + L ++ ++W Y+ V R+ F+R + +P H W Y F R
Sbjct: 116 FERALILLNKMPRIWEMYLTFMLQQPLVTQTRRTFDRALRALPVTQHNRIWKLYKTFA-R 174
Query: 66 YNEVQRARHIFERLVQCHPYNLSAWIN 92
Q A I+ R +Q HP N +IN
Sbjct: 175 SASGQTAVKIWARYMQIHPENAEEYIN 201
Score = 48 (22.0 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 90 WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137
W A + + G ++AR+V+E + + + +F ++ +FEE
Sbjct: 280 WAGLATYWITKGNFEKARDVFEEGITTVMTVR--DFTLIFDSYVEFEE 325
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 103 (41.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 56/232 (24%), Positives = 93/232 (40%)
Query: 143 KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDRE-GIEDAIAGKMRLQYEDGVR 201
KE D AR F DL+ K+ Y DR+ I+D + +E VR
Sbjct: 303 KEGDPARVQIIFGRALAENCLVPDLWIKYTT----YLDRQLKIKDLVLSA----HERAVR 354
Query: 202 KNPMNYDTWFDYIRLEERVG-NQERVREVYERAI--ANVPPAEEKRYWQRYI-YLWINYA 257
P W Y+ ER G + + V++V+E+A+ + + WQ Y+ YL
Sbjct: 355 NCPWTMGLWKSYLLALERHGADHQTVKDVFEKALNAGFIQATDYVEIWQSYLDYLRRRVD 414
Query: 258 LYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEER-----RIFKKYIEME-LCLGNIDPC 310
KE +L+ R + R+L R E + + + +E L N+
Sbjct: 415 FSKEWSR-ELDELRAAFSRSLEYLKQDVEERFSESGDLSCTLMQIWARIEALHCKNMQKA 473
Query: 311 RKLYEKYL-EWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE 361
R+L++ + + + + W +Y LE+S + R A+ Q D PE
Sbjct: 474 RELWDSIMTKGNAKYANMWLEYYNLERSYGDAAHCRKALHRAV-QCTSDYPE 524
Score = 79 (32.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 25/105 (23%), Positives = 50/105 (47%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQ-IFERWMHWMPDH---EGWLSYIK 61
R A ++ L P +++W ++++ E + R+ ++E + + D+ E WL Y++
Sbjct: 95 RKARQKMSELFPLTEEIWLDWLKDEIRITEDESDRERVYELFERAIKDYVCPEIWLEYVQ 154
Query: 62 FKL----RYNEVQRARHIFERL---VQCH-PYNLSAWINFADFEM 98
+ + ++R R IFER V H S W + +FE+
Sbjct: 155 YSIGGMGAQGGIERVRSIFERALTAVGLHMTKGASIWEAYREFEI 199
>UNIPROTKB|E1C8G8 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
Uniprot:E1C8G8
Length = 628
Score = 90 (36.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 38/168 (22%), Positives = 67/168 (39%)
Query: 193 RLQYEDGVRK-----NPMN---YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR 244
R +E+G+++ P+ W +Y+ E G ERV ++ER + + E+
Sbjct: 291 RWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYED-- 348
Query: 245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCL 304
WI YA Y E + +E R VY + P + ++ + E +
Sbjct: 349 -------FWIKYAKYMENHS--IEGVRHVYSRACTIHLPKKPMVH--MLWAAFEEQQ--- 394
Query: 305 GNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI 352
GNID R++ + + E + LE+ E A + E A+
Sbjct: 395 GNIDEARRILKTFEECILGLAMVRLRRVSLERRHGNMEEAERLLEEAV 442
Score = 87 (35.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 43/189 (22%), Positives = 88/189 (46%)
Query: 52 DHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111
D GW+ +++ + N + AR F++ +PY W +AD E + + ++ VY
Sbjct: 54 DFTGWVYLLQYVEQENHLPAARKAFDKFFTHYPYCYGYWKKYADLERRHDNIKQSDEVYR 113
Query: 112 CAVE-IFLADDHDEAEQLFVAFAKF--EEMGCNCKETDRA-RCIYKFALDRIPKG---RA 164
++ I L+ D L++ + F + + + E + R Y+ A+ + G R+
Sbjct: 114 RGLQAIPLSVD------LWIHYINFLKDTLDPDDPEANSTIRGAYEHAV--LAAGTDFRS 165
Query: 165 EDLYRKFLAFEKQYGD-RE--GIEDAIAG-KMRL------QYEDGVRKN-PMNYDTWFDY 213
+ L+ ++ +E + G+ RE I D I G +L +++D V+ N P + T +
Sbjct: 166 DRLWEMYINWEDEQGNLREVTSIYDRILGIPTQLYSHHFQRFKDHVQNNLPRDLLTSEQF 225
Query: 214 IRLEERVGN 222
I+L + +
Sbjct: 226 IQLRRELAS 234
>TAIR|locus:2007973 [details] [associations]
symbol:CSTF77 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031123 "RNA 3'-end processing"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF05843 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00386 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0045892 GO:GO:0003729 GO:GO:0006397 Gene3D:1.25.40.10
eggNOG:COG5107 KO:K14408 GO:GO:0031123 UniGene:At.27878
UniGene:At.28561 EMBL:BT002320 IPI:IPI00548656 RefSeq:NP_173218.2
SMR:Q8GUP1 IntAct:Q8GUP1 STRING:Q8GUP1 EnsemblPlants:AT1G17760.1
GeneID:838354 KEGG:ath:AT1G17760 TAIR:At1g17760
HOGENOM:HOG000030800 InParanoid:Q8GUP1 OMA:FEQTYGD
ProtClustDB:CLSN2690404 Genevestigator:Q8GUP1 Uniprot:Q8GUP1
Length = 734
Score = 123 (48.4 bits), Expect = 0.00023, P = 0.00023
Identities = 36/183 (19%), Positives = 83/183 (45%)
Query: 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKF 62
D + R + P + L + MEE+ G + A++++E + + + Y++F
Sbjct: 283 DAAIKVFQRALKAIPDSEMLKYAFAEMEESRGAIQSAKKLYENILGASTNSLAHIQYLRF 342
Query: 63 KLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR-ARNVYECAVEIFLADD 121
R V+ AR F + +I FA + + + A N++E ++++++
Sbjct: 343 LRRAEGVEAARKYFLDARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMS-- 400
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
E +++ K+ + + R +++ AL +P + +++++F+ FE+ YGD
Sbjct: 401 ----EPVYIL--KYADFLTRLNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDL 454
Query: 182 EGI 184
I
Sbjct: 455 ASI 457
Score = 92 (37.4 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERV 226
++KFL+FEK G+ + I+ A + K + + +Y D W+DY + G+ +
Sbjct: 228 WKKFLSFEK--GNPQRIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAA 285
Query: 227 REVYERAIANVPPAEEKRY 245
+V++RA+ +P +E +Y
Sbjct: 286 IKVFQRALKAIPDSEMLKY 304
Score = 65 (27.9 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKF 62
++++++L P + W Y+ + + N +QIF R + W YI+F
Sbjct: 29 YEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSRCLLTCLQVPLWQCYIRF 82
Score = 61 (26.5 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 293 IFKKYIEMELCLGNIDP--CRKLYEKYLE-WSPENCYAWSKYTELEKSLDETERARAIFE 349
++ + M C+ +P ++E+ L+ + E Y KY + L++ RA+FE
Sbjct: 369 VYIAFATMAFCIDK-EPKVAHNIFEEGLKLYMSEPVYIL-KYADFLTRLNDDRNIRALFE 426
Query: 350 LAIAQ-PILDLPEFLWK 365
A++ P+ D E +WK
Sbjct: 427 RALSTLPVEDSAE-VWK 442
Score = 46 (21.3 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMEL 302
K Y +Y+ + YA + L R++ R LF S P + ++K++I+ E
Sbjct: 396 KLYMSEPVYI-LKYADFLT----RLNDDRNI-RALFERALSTLPVEDSAEVWKRFIQFEQ 449
Query: 303 CLGNIDPCRKLYEKYLE 319
G++ K+ ++ E
Sbjct: 450 TYGDLASILKVEQRMKE 466
>UNIPROTKB|E2RMS8 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 KO:K14557 InterPro:IPR013949
Pfam:PF08640 CTD:55813 OMA:EKEQESC GeneTree:ENSGT00390000016493
EMBL:AAEX03006648 RefSeq:XP_853877.1 ProteinModelPortal:E2RMS8
Ensembl:ENSCAFT00000029395 GeneID:480616 KEGG:cfa:480616
NextBio:20855608 Uniprot:E2RMS8
Length = 598
Score = 92 (37.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 147 RARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK-NPM 205
+AR ++K + P + D +RK + FEK+ E +R YE +R+ +
Sbjct: 493 KARAVFKSLQESRPF--SVDFFRKIIQFEKEQ------ESCKMANLREYYERALREFGSV 544
Query: 206 NYDTWFDYIR--LEERVGNQERVREVYERAI 234
+ D W DYI+ L +G E ++Y RAI
Sbjct: 545 DSDLWMDYIKEELNHPLGKPENCGQIYWRAI 575
Score = 83 (34.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 49 WMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARN 108
W D + WLSY+ F ++ + +F ++ H + WI A +EM+ DR +
Sbjct: 103 WKDDVQLWLSYVVFCKKWATKPQLSKVFSAMLAIHSNKPALWIMAAKWEME----DRLSS 158
Query: 109 VYECAVEIFLAD--DHDEAEQLFVAFAKFEEM 138
E A ++FL H E +L+ + + E M
Sbjct: 159 --ESARQLFLRALRFHPECPKLYQEYFRMELM 188
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 134 (52.2 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 58/262 (22%), Positives = 115/262 (43%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEGWLSYIKFKLRY 66
+DR+V SP LW Y+ + AR + ER + + + + L+ L
Sbjct: 1612 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1671
Query: 67 NEVQRARHIFERLVQ-CHPYN--LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD 123
+ ++ ++ + YN L +++ AD K + A +Y ++ F +
Sbjct: 1672 ENMYGSQESLAKVFERAVQYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQE--- 1728
Query: 124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG 183
+ +++ + F +G + + + + + AL+ +P D+ KF E Q GD E
Sbjct: 1729 --KAVWIKYGAFV-LGRS--QAGASHRVLQRALECLPTKEHVDVIVKFAQLEFQLGDVER 1783
Query: 184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI-ANVPPAEE 242
+ AI +E+ + P D W YI + + G+Q+ VR+++ER I ++ P
Sbjct: 1784 AK-AI-------FENTLTTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRM 1835
Query: 243 KRYWQRYIYLWINYALYKEVDA 264
K +++RY+ + K+V A
Sbjct: 1836 KFFFKRYLDYEKQHGTEKDVQA 1857
>UNIPROTKB|A5PJN6 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005730 GO:GO:0006396 Gene3D:1.25.40.10
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640 CTD:55813
HOGENOM:HOG000285956 HOVERGEN:HBG051886 OMA:EKEQESC
OrthoDB:EOG4RBQJ7 GeneTree:ENSGT00390000016493 EMBL:DAAA02048528
EMBL:BC142183 IPI:IPI00710076 RefSeq:NP_001092610.1
UniGene:Bt.20427 STRING:A5PJN6 Ensembl:ENSBTAT00000020740
GeneID:614984 KEGG:bta:614984 InParanoid:A5PJN6 NextBio:20899389
Uniprot:A5PJN6
Length = 598
Score = 102 (41.0 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 40/145 (27%), Positives = 66/145 (45%)
Query: 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269
W + + E G QE +Y+RAI +P A+ + Y+ N+A Y+ +G ++
Sbjct: 442 WLTWAQWSEDAGKQEETEAIYKRAIFGLPGADSVPVKEMYL----NWA-YR---SGGYKK 493
Query: 270 TRDVYRTLFI---FYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL-EWSPENC 325
RDV+++L F F +M + F+K E E C ++ R+ YE+ L E+ +
Sbjct: 494 ARDVFKSLQENRPFSVDFFRKMIQ---FEK--EQESC--KMENLREYYERALREFGTNDS 546
Query: 326 YAWSKYT--ELEKSLDETERARAIF 348
W Y EL L E I+
Sbjct: 547 DLWMDYIKEELNHPLGRPENCGQIY 571
Score = 71 (30.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 27/102 (26%), Positives = 44/102 (43%)
Query: 40 RQIFERW-MHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98
+ +F R + W D WLS+I F ++ IF L+ H WI A +E+
Sbjct: 93 QSVFRRASIKWKDDVRLWLSFIAFCRKWASNVHLSKIFSSLLAFHSNKPGLWILAAKWEL 152
Query: 99 KMGEVDRARNVYECAVEIFLAD--DHDEAEQLFVAFAKFEEM 138
+ DR + E A ++FL H +L+ + + E M
Sbjct: 153 E----DRFSS--ESARQLFLRALRFHPRCPKLYEEYFRMELM 188
>DICTYBASE|DDB_G0283307 [details] [associations]
symbol:prpf39 "pre-mRNA processing factor 39"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
dictyBase:DDB_G0283307 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:AAFI02000052 KO:K13217
eggNOG:NOG298273 RefSeq:XP_639156.1 ProteinModelPortal:Q54R91
EnsemblProtists:DDB0233547 GeneID:8624026 KEGG:ddi:DDB_G0283307
InParanoid:Q54R91 OMA:ADHEYAH Uniprot:Q54R91
Length = 699
Score = 133 (51.9 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 55/262 (20%), Positives = 112/262 (42%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYIKFKLRYN 67
W ++V +P W I + E ++ R+++ +++ P W + + +N
Sbjct: 28 W-KIVQTNPLAFNQWTFLIGVIEKTNDIEKIRKVYSEFLNEFPLCFLYWKRFADHEYAHN 86
Query: 68 EVQRARHIFERLVQCHPYNLSAWINFADFEM-KMGEVDRARNVYECAVEIFLADDHDEAE 126
++ IFE+ V P+++ W+N+ + K VD R+V++ + I + D+ ++
Sbjct: 87 NTTQSIEIFEKAVSSIPHSVDIWLNYCTHLIDKSYPVDEIRSVFKRGINI-IGTDY-QSG 144
Query: 127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIED 186
+ + + +FE MG +E + I+ L + P + KF K DR I D
Sbjct: 145 KFWEKYIEFE-MG---QENNELASIFNSIL-KTPLENLQIFNEKF----KDNIDRIKIND 195
Query: 187 AIAGKMRLQYE--DGVRKNPM--NYDTWFDYIRLEERVGNQERVREVY-ERAIANVPPAE 241
+ + R +Y D K + N + W Y E++ + + +R ++ P +
Sbjct: 196 MLTEEERKEYTGYDAETKQMVLQNREKW--YHETLEKISKRSNFESIVNKRFFFHIQPID 253
Query: 242 EKRYWQRYIYLWINYALYKEVD 263
E + +W +Y Y E D
Sbjct: 254 EMT-----LSVWRSYFNYMESD 270
Score = 39 (18.8 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 272 DVYRTLFIFYFSFSP--RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
++ LFI S S R+E+ KK + LCL + + ++ E + E +
Sbjct: 467 EINNLLFIISGSGSSEKRIEQIERIKKVYNIALCLDK-NKIKNNGKENKEENKEENKENT 525
Query: 330 KYTELEKSLDETER 343
E EK D+ E+
Sbjct: 526 NNEEKEKEKDDEEK 539
>UNIPROTKB|Q86UA1 [details] [associations]
symbol:PRPF39 "Pre-mRNA-processing factor 39" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
EMBL:AL121809 CTD:55015 HOGENOM:HOG000010277 HOVERGEN:HBG082194
KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9 EMBL:AK001990 EMBL:BC051886
EMBL:BC125126 EMBL:BC125127 IPI:IPI00789246 IPI:IPI00878754
RefSeq:NP_060392.3 UniGene:Hs.274337 ProteinModelPortal:Q86UA1
SMR:Q86UA1 IntAct:Q86UA1 STRING:Q86UA1 PhosphoSite:Q86UA1
DMDM:223590245 PaxDb:Q86UA1 PRIDE:Q86UA1 Ensembl:ENST00000355765
GeneID:55015 KEGG:hsa:55015 UCSC:uc001wvy.4 UCSC:uc001wwa.1
GeneCards:GC14P045553 H-InvDB:HIX0011621 HGNC:HGNC:20314
HPA:HPA001176 MIM:614907 neXtProt:NX_Q86UA1 PharmGKB:PA142671127
InParanoid:Q86UA1 GenomeRNAi:55015 NextBio:58381
ArrayExpress:Q86UA1 Bgee:Q86UA1 CleanEx:HS_PRPF39
Genevestigator:Q86UA1 GermOnline:ENSG00000185246 Uniprot:Q86UA1
Length = 669
Score = 95 (38.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 43/195 (22%), Positives = 86/195 (44%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERW-MHWMPDHEGWLSYIKFKLRYN 67
W + V +P+ W ++ E ++ AR+ F+R+ +H+ + W Y + R++
Sbjct: 85 W-KTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHD 143
Query: 68 EVQRARHIFERLVQCHPYNLSAWINFADF---EMKMGEVDR---ARNVYECAVEIFLADD 121
++ + ++ R +Q P ++ WI++ +F + G+ + R +E AV LA
Sbjct: 144 NIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAV---LAAG 200
Query: 122 HD-EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
D +++L+ + +E N +E IY DRI G LY K++
Sbjct: 201 TDFRSDRLWEMYINWENEQGNLREVT---AIY----DRI-LGIPTQLYSHHFQRFKEHVQ 252
Query: 181 REGIEDAIAGKMRLQ 195
D + G+ +Q
Sbjct: 253 NNLPRDLLTGEQFIQ 267
Score = 95 (38.5 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 35/133 (26%), Positives = 63/133 (47%)
Query: 54 EGWLSYIKFKLRYNEVQRARHIFER-LVQCHPYNLSAWINFADFEMKMGEVDRARNVYEC 112
+ W Y++F++ +R +FER ++ C Y WI +A + M+ ++ R+V+
Sbjct: 354 KNWKEYLEFEIENGTHERVVVLFERCVISCALYE-EFWIKYAKY-MENHSIEGVRHVFSR 411
Query: 113 AVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL 172
A I L + + + +A FEE N E AR I K + G A R+ +
Sbjct: 412 ACTIHLP----KKPMVHMLWAAFEEQQGNINE---ARNILK-TFEECVLGLAMVRLRR-V 462
Query: 173 AFEKQYGDREGIE 185
+ E+++G+ E E
Sbjct: 463 SLERRHGNLEEAE 475
Score = 78 (32.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 37/168 (22%), Positives = 66/168 (39%)
Query: 193 RLQYEDGVRK-----NPMN---YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR 244
R +E+G+++ P+ W +Y+ E G ERV ++ER + + EE
Sbjct: 331 RWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEE-- 388
Query: 245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCL 304
WI YA Y E + +E R V+ + P + ++ + E +
Sbjct: 389 -------FWIKYAKYMENHS--IEGVRHVFSRACTIHLPKKPMVH--MLWAAFEEQQ--- 434
Query: 305 GNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI 352
GNI+ R + + + E + LE+ E A + + AI
Sbjct: 435 GNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAI 482
Score = 68 (29.0 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYIKF 62
R A+DR P W Y +E+ N+ + +++ R + +P + W+ YI F
Sbjct: 115 RKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINF 172
>UNIPROTKB|F1PV57 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 CTD:55015 GeneTree:ENSGT00390000005033 KO:K13217
OMA:GWVYLLQ EMBL:AAEX03005706 RefSeq:XP_851059.2
Ensembl:ENSCAFT00000022300 GeneID:480305 KEGG:cfa:480305
Uniprot:F1PV57
Length = 667
Score = 95 (38.5 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 42/195 (21%), Positives = 87/195 (44%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERW-MHWMPDHEGWLSYIKFKLRYN 67
W + V +P+ W ++ E ++ AR+ F+++ +H+ + W Y + R++
Sbjct: 83 W-KTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRHD 141
Query: 68 EVQRARHIFERLVQCHPYNLSAWINFADF---EMKMGEVDR---ARNVYECAVEIFLADD 121
++++ ++ R +Q P ++ WI++ +F + G+ + R +E AV LA
Sbjct: 142 NIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAV---LAAG 198
Query: 122 HD-EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
D +++L+ + +E N +E IY DRI G LY K++
Sbjct: 199 TDFRSDRLWEMYINWENEQGNLREVT---AIY----DRI-LGIPTQLYSHHFQRFKEHVQ 250
Query: 181 REGIEDAIAGKMRLQ 195
D + G+ +Q
Sbjct: 251 NNLPRDLLTGEQFIQ 265
Score = 77 (32.2 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 37/168 (22%), Positives = 65/168 (38%)
Query: 193 RLQYEDGVRK-----NPMN---YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR 244
R +E+G+++ P+ W +Y+ E G ERV ++ER + + EE
Sbjct: 329 RWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEE-- 386
Query: 245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCL 304
WI YA Y E + +E R V+ + P + ++ + E +
Sbjct: 387 -------FWIKYAKYMENHS--IEGVRHVFSRACTIHLPKKPMVH--MLWAAFEEQQ--- 432
Query: 305 GNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI 352
GNI+ R + + E + LE+ E A + + AI
Sbjct: 433 GNINEARNILRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAI 480
>UNIPROTKB|F1N9U0 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0050681 "androgen receptor
binding" evidence=IEA] [GO:0071001 "U4/U6 snRNP" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
GO:GO:0045944 GO:GO:0005682 GO:GO:0003723 GO:GO:0003713
Gene3D:1.25.40.10 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 GO:GO:0006403 GO:GO:0071001 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 EMBL:AADN02019178 EMBL:AADN02019179
EMBL:AADN02019180 IPI:IPI00589966 Ensembl:ENSGALT00000009656
Uniprot:F1N9U0
Length = 945
Score = 97 (39.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 50/242 (20%), Positives = 98/242 (40%)
Query: 26 YIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHP 84
YIR E ++ +++ + + +P+ W + ++ + E + AR + R V+C P
Sbjct: 380 YIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELE----EPEDARIMLSRAVECCP 435
Query: 85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144
++ W+ A E + AR V A E D H +++ AK EE N +
Sbjct: 436 TSVELWLALARLET----YENARKVLNKARENIPTDRH-----IWITAAKLEEANGNTQM 486
Query: 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP 204
++ I A+ + + ++ R+ + + D+ G MR G+ +
Sbjct: 487 VEK---IIDRAITSL-RANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEED 542
Query: 205 MNYDTWFDYIRLEERVGNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262
+ TW + + V + E R +Y A+ P +K W R Y N+ + +
Sbjct: 543 RKH-TWME--DADSCVAHNALECARAIYAYALQVFP--SKKSVWLRAAYFEKNHGTRESL 597
Query: 263 DA 264
+A
Sbjct: 598 EA 599
Score = 77 (32.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351
R+F K +++E LGNI ++L E+ L + W ++E+ + ERAR +
Sbjct: 680 RVFMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQKELVERAREAYNQG 739
Query: 352 IAQPILDLPEFLW 364
+ + +P LW
Sbjct: 740 LKKCPHSIP--LW 750
>MGI|MGI:104602 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog
(yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 MGI:MGI:104602 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
HOGENOM:HOG000010277 HOVERGEN:HBG082194 OrthoDB:EOG49GKG9
EMBL:AK017379 EMBL:AK154170 EMBL:AK168462 EMBL:BC029153
IPI:IPI00170040 IPI:IPI00761305 UniGene:Mm.283339
ProteinModelPortal:Q8K2Z2 SMR:Q8K2Z2 STRING:Q8K2Z2
PhosphoSite:Q8K2Z2 PaxDb:Q8K2Z2 PRIDE:Q8K2Z2 UCSC:uc007nqw.1
UCSC:uc007nra.1 InParanoid:Q8K2Z2 ChiTaRS:PRPF39
Genevestigator:Q8K2Z2 GermOnline:ENSMUSG00000035597 Uniprot:Q8K2Z2
Length = 665
Score = 101 (40.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 41/195 (21%), Positives = 89/195 (45%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERW-MHWMPDHEGWLSYIKFKLRYN 67
W + V ++P+ W ++ E ++ AR+ F+++ +H+ + W Y + R++
Sbjct: 83 W-KTVEMNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFVHYPYCYGYWKKYADLEKRHD 141
Query: 68 EVQRARHIFERLVQCHPYNLSAWINFADF---EMKMGEVDR---ARNVYECAVEIFLADD 121
++++ ++ R +Q P ++ WI++ +F ++ G+ + R +E AV LA
Sbjct: 142 NIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRGTFEHAV---LAAG 198
Query: 122 HD-EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
D +++L+ + +E N +E +Y DRI G LY K++
Sbjct: 199 TDFRSDKLWEMYINWENEQGNLREVT---AVY----DRI-LGIPTQLYSHHFQRFKEHVQ 250
Query: 181 REGIEDAIAGKMRLQ 195
D + G+ +Q
Sbjct: 251 NNLPRDLLTGEQFIQ 265
Score = 92 (37.4 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 35/133 (26%), Positives = 63/133 (47%)
Query: 54 EGWLSYIKFKLRYNEVQRARHIFER-LVQCHPYNLSAWINFADFEMKMGEVDRARNVYEC 112
+ W Y++F++ +R +FER ++ C Y WI +A + M+ ++ R+V+
Sbjct: 352 KNWKEYLEFEIENGTHERVVVLFERCVISCALYE-EFWIKYAKY-MENHSIEGVRHVFSR 409
Query: 113 AVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL 172
A + L A L+ AF E+ G N E AR I + + G A R+ +
Sbjct: 410 ACTVHLPKK-PMAHMLWAAFE--EQQG-NINE---ARIILR-TFEECVLGLAMVRLRR-V 460
Query: 173 AFEKQYGDREGIE 185
+ E+++G+ E E
Sbjct: 461 SLERRHGNMEEAE 473
Score = 69 (29.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 33/143 (23%), Positives = 54/143 (37%)
Query: 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269
W +Y+ E G ERV ++ER + + EE WI YA Y E + +E
Sbjct: 354 WKEYLEFEIENGTHERVVVLFERCVISCALYEE---------FWIKYAKYMENHS--IEG 402
Query: 270 TRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
R V+ + P ++ + E + GNI+ R + + E
Sbjct: 403 VRHVFSRACTVHLPKKPMAH--MLWAAFEEQQ---GNINEARIILRTFEECVLGLAMVRL 457
Query: 330 KYTELEKSLDETERARAIFELAI 352
+ LE+ E A + + AI
Sbjct: 458 RRVSLERRHGNMEEAEHLLQDAI 480
Score = 66 (28.3 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYIKF 62
R A+D+ P W Y +E+ N+ + +++ R + +P + W+ YI F
Sbjct: 113 RKAFDKFFVHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINF 170
Score = 48 (22.0 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 214 IRLEERVGNQERVREVYERAIANVPPAEEKRYW 246
+ LE R GN E + + AI N E ++
Sbjct: 460 VSLERRHGNMEEAEHLLQDAIKNAKSNNESSFY 492
Score = 38 (18.4 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 306 NIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD 339
N+ RK+ + +E EN + E+E S D
Sbjct: 506 NLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSCD 539
>RGD|1307103 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA processing factor 6 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISO] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005682 "U5 snRNP" evidence=IEA;ISO] [GO:0006403 "RNA
localization" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA;ISO] [GO:0050681
"androgen receptor binding" evidence=IEA;ISO] [GO:0071001 "U4/U6
snRNP" evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 RGD:1307103 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW
EMBL:CH474066 EMBL:BC128779 IPI:IPI00368842 RefSeq:NP_001073234.1
UniGene:Rn.17062 ProteinModelPortal:A1A5S1 STRING:A1A5S1
Ensembl:ENSRNOT00000021722 GeneID:366276 KEGG:rno:366276
UCSC:RGD:1307103 InParanoid:A1A5S1 NextBio:689115
Genevestigator:A1A5S1 Uniprot:A1A5S1
Length = 941
Score = 101 (40.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 51/242 (21%), Positives = 98/242 (40%)
Query: 26 YIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHP 84
YIR E ++ +++ + + +P+ W + ++ + E + AR + R V+C P
Sbjct: 376 YIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELE----EPEDARIMLSRAVECCP 431
Query: 85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144
++ W+ A E + AR V A E D H +++ AK EE N +
Sbjct: 432 TSVELWLALARLET----YENARKVLNKARENIPTDRH-----IWITAAKLEEANGNTQM 482
Query: 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP 204
++ I A+ + + ++ R+ + + DR G MR G+ +
Sbjct: 483 VEK---IIDRAITSL-RANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEED 538
Query: 205 MNYDTWFDYIRLEERVGNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262
+ TW + + V + E R +Y A+ P +K W R Y N+ + +
Sbjct: 539 RKH-TWME--DADSCVAHNALECARAIYAYALQVFP--SKKSVWLRAAYFEKNHGTRESL 593
Query: 263 DA 264
+A
Sbjct: 594 EA 595
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351
R+F K +++E LGNI ++L E+ L + W ++E+ + ERAR +
Sbjct: 676 RVFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMERAREAYNQG 735
Query: 352 IAQPILDLPEFLW 364
+ + P LW
Sbjct: 736 LKKCPHSTP--LW 746
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 129 (50.5 bits), Expect = 0.00014, P = 0.00014
Identities = 51/250 (20%), Positives = 107/250 (42%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------WLSYIKF 62
++R++ +P +W NY+ + L + AR++ ER + + E W++ +
Sbjct: 1464 FERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERALKTINFREEAEKLNIWIAMLNL 1523
Query: 63 KLRYNEVQRARHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
+ + + +F R Q Y + + +E+ + D+A +++ + F
Sbjct: 1524 ENTFGTEETLEEVFSRACQYMDSYTIHTKL-LGIYEISE-KFDKAAELFKATAKKF---- 1577
Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
E ++V++ F + E AR I AL +PK ++ RKF E GD
Sbjct: 1578 GGEKVSIWVSWGDFL---ISHNEEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKGDP 1634
Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN-VPPA 240
E + R +E V P D W Y+ E + ++++V +++ER I +
Sbjct: 1635 E--------RGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIITKKITRK 1686
Query: 241 EEKRYWQRYI 250
+ K ++ +++
Sbjct: 1687 QAKFFFNKWL 1696
>CGD|CAL0000714 [details] [associations]
symbol:orf19.2330 species:5476 "Candida albicans" [GO:0034388
"Pwp2p-containing subcomplex of 90S preribosome" evidence=IEA]
[GO:0032040 "small-subunit processome" evidence=IEA] [GO:0030515
"snoRNA binding" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714 GO:GO:0071216
GO:GO:0036180 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114 EMBL:AACQ01000113
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640
RefSeq:XP_713935.1 RefSeq:XP_713993.1 ProteinModelPortal:Q59WH2
STRING:Q59WH2 GeneID:3644384 GeneID:3644449 KEGG:cal:CaO19.2330
KEGG:cal:CaO19.9866 Uniprot:Q59WH2
Length = 431
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 24/92 (26%), Positives = 49/92 (53%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYN 67
+DR P +LW+ Y++ ++ G + +++ R + P + WLS K++ N
Sbjct: 100 FDRATRRYPGETELWSQYLKFAKSNGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETN 159
Query: 68 -EVQRARHIFERLVQCHPYNLSAWINFADFEM 98
+ AR +F+R ++ + +L W+N+A FE+
Sbjct: 160 GNAKGARVLFQRGLRLNSESLELWLNYAQFEL 191
>UNIPROTKB|Q59WH2 [details] [associations]
symbol:UTP6 "Potential U3 snoRNP protein Utp6p"
species:237561 "Candida albicans SC5314" [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714
GO:GO:0071216 GO:GO:0036180 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114
EMBL:AACQ01000113 eggNOG:COG5191 KO:K14557 InterPro:IPR013949
Pfam:PF08640 RefSeq:XP_713935.1 RefSeq:XP_713993.1
ProteinModelPortal:Q59WH2 STRING:Q59WH2 GeneID:3644384
GeneID:3644449 KEGG:cal:CaO19.2330 KEGG:cal:CaO19.9866
Uniprot:Q59WH2
Length = 431
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 24/92 (26%), Positives = 49/92 (53%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYN 67
+DR P +LW+ Y++ ++ G + +++ R + P + WLS K++ N
Sbjct: 100 FDRATRRYPGETELWSQYLKFAKSNGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETN 159
Query: 68 -EVQRARHIFERLVQCHPYNLSAWINFADFEM 98
+ AR +F+R ++ + +L W+N+A FE+
Sbjct: 160 GNAKGARVLFQRGLRLNSESLELWLNYAQFEL 191
>MGI|MGI:1922946 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA splicing factor 6 homolog
(yeast)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006403 "RNA localization" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0071001 "U4/U6 snRNP" evidence=ISO] [GO:0071013 "catalytic step
2 spliceosome" evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 Pfam:PF13181 SMART:SM00386 MGI:MGI:1922946
GO:GO:0005634 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0050681 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 EMBL:CH466626 GO:GO:0006403 ChiTaRS:PRPF6
GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 EMBL:BC005801
EMBL:BC014869 EMBL:BC023691 EMBL:BC025030 EMBL:AK011639
EMBL:AK145461 EMBL:AK081998 EMBL:AL844529 IPI:IPI00130409
IPI:IPI00229813 RefSeq:NP_598462.1 UniGene:Mm.292001
ProteinModelPortal:Q91YR7 SMR:Q91YR7 STRING:Q91YR7
PhosphoSite:Q91YR7 PaxDb:Q91YR7 PRIDE:Q91YR7
Ensembl:ENSMUST00000002529 Ensembl:ENSMUST00000136481 GeneID:68879
KEGG:mmu:68879 UCSC:uc008omy.1 InParanoid:Q3ULJ7 NextBio:328105
Bgee:Q91YR7 CleanEx:MM_PRPF6 Genevestigator:Q91YR7
GermOnline:ENSMUSG00000002455 Uniprot:Q91YR7
Length = 941
Score = 101 (40.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 51/242 (21%), Positives = 98/242 (40%)
Query: 26 YIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHP 84
YIR E ++ +++ + + +P+ W + ++ + E + AR + R V+C P
Sbjct: 376 YIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELE----EPEDARIMLSRAVECCP 431
Query: 85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144
++ W+ A E + AR V A E D H +++ AK EE N +
Sbjct: 432 TSVELWLALARLET----YENARKVLNKARENIPTDRH-----IWITAAKLEEANGNTQM 482
Query: 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP 204
++ I A+ + + ++ R+ + + DR G MR G+ +
Sbjct: 483 VEK---IIDRAITSL-RANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEED 538
Query: 205 MNYDTWFDYIRLEERVGNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262
+ TW + + V + E R +Y A+ P +K W R Y N+ + +
Sbjct: 539 RKH-TWME--DADSCVAHNALECARAIYAYALQVFP--SKKSVWLRAAYFEKNHGTRESL 593
Query: 263 DA 264
+A
Sbjct: 594 EA 595
Score = 70 (29.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351
R+F K +++E LGNI ++L E+ L + W ++E+ + E+AR +
Sbjct: 676 RVFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQG 735
Query: 352 IAQPILDLPEFLW 364
+ + P LW
Sbjct: 736 LKKCPHSTP--LW 746
>DICTYBASE|DDB_G0286645 [details] [associations]
symbol:cstf3 "cleavage stimulation factor subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF05843 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0286645
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0006378 GO:GO:0003723
EMBL:AAFI02000089 Gene3D:1.25.40.10 GO:GO:0006379 eggNOG:COG5107
KO:K14408 RefSeq:XP_637594.1 ProteinModelPortal:Q54LG7 PRIDE:Q54LG7
EnsemblProtists:DDB0233707 GeneID:8625734 KEGG:ddi:DDB_G0286645
InParanoid:Q54LG7 OMA:MARDIFE ProtClustDB:CLSZ2430079
Uniprot:Q54LG7
Length = 1065
Score = 125 (49.1 bits), Expect = 0.00022, P = 0.00022
Identities = 41/166 (24%), Positives = 76/166 (45%)
Query: 39 ARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98
A++I+E+ + P+ W+ Y+KF R ++ R IF+R +I E
Sbjct: 490 AKEIYEKILQANPEPLVWIQYMKFSRRTERIEGPRKIFKRAKSTPDCTYHVYIALGLIEY 549
Query: 99 KMGEVDR-ARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157
+ + R AR+++E ++ F +E FV F + E N E + R +++ L
Sbjct: 550 YINQDTRMARDIFEIGLKKF------PSEIAFVNF--YIEFLTNLNEENNTRVLFEKLLT 601
Query: 158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN 203
++E ++RKFL FE Y + + + K+ +Y+ V N
Sbjct: 602 WPSLEKSESIWRKFLDFE--YRQNQDVSSIL--KLEKRYQVTVNSN 643
>UNIPROTKB|B7ZKM0 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AC008119
InterPro:IPR008669 Pfam:PF05391 UniGene:Hs.584842 HGNC:HGNC:16860
HOVERGEN:HBG053888 ChiTaRS:SART3 EMBL:AC010206 EMBL:BC143253
IPI:IPI00719256 SMR:B7ZKM0 STRING:B7ZKM0 Ensembl:ENST00000431469
UCSC:uc010swx.1 Uniprot:B7ZKM0
Length = 927
Score = 124 (48.7 bits), Expect = 0.00024, P = 0.00024
Identities = 69/319 (21%), Positives = 138/319 (43%)
Query: 69 VQRARHIFERL---VQCH-PYNLSAWINFADFEMKMGEVDRARNVY-----ECAVEIFLA 119
+++ R +FER V H L+ W + +FE + E R V+ + A+ ++
Sbjct: 203 LEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVEAARLEKVHSLFRRQLAIPLYDM 262
Query: 120 D----DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175
+ +++E + + + + ++ ++ + Y+ AL + R + Y+ ++ FE
Sbjct: 263 EATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKP-YEEALLQAEAPRLAE-YQAYIDFE 320
Query: 176 KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIR-LEERVGNQERVREVYERAI 234
+ GD +++L +E + +N + D W Y + L+ ++ ++ V V+ RAI
Sbjct: 321 MKIGD--------PARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAI 372
Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEV--DAG-DLERTRDVY-RTLFIFYFSFSPRMEE 290
N P W RY+ + + +V D+ +LE R + R L R E
Sbjct: 373 RNCPWTVA--LWSRYLLAMERHGVDHQVISDSSKELEELRAAFTRALEYLKQEVEERFNE 430
Query: 291 RR-----IFKKY--IEMELCLGNIDPCRKLYEKYL-EWSPENCYAWSKYTELEKSLDETE 342
I + + IE LC N+ R+L++ + + + W +Y LE++ +T+
Sbjct: 431 SGDPSCVIMQNWARIEARLC-NNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQ 489
Query: 343 RARAIFELAIAQPILDLPE 361
R A+ Q D PE
Sbjct: 490 HCRKALHRAV-QCTSDYPE 507
>UNIPROTKB|E2RPW8 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 Gene3D:1.25.40.10 GO:GO:0000398
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 GeneTree:ENSGT00550000075016 EMBL:AAEX03014173
EMBL:AAEX03014174 RefSeq:XP_534481.3 Ensembl:ENSCAFT00000020914
GeneID:477289 KEGG:cfa:477289 Uniprot:E2RPW8
Length = 941
Score = 98 (39.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 50/242 (20%), Positives = 98/242 (40%)
Query: 26 YIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHP 84
YIR E ++ +++ + + +P+ W + ++ + E + AR + R V+C P
Sbjct: 376 YIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELE----EPEDARIMLSRAVECCP 431
Query: 85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144
++ W+ A E + AR V A E D H +++ AK EE N +
Sbjct: 432 TSVELWLALARLET----YENARKVLNKARENIPTDRH-----IWITAAKLEEANGNTQM 482
Query: 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP 204
++ I A+ + + ++ R+ + + D+ G MR G+ +
Sbjct: 483 VEK---IIDRAITSL-RANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEED 538
Query: 205 MNYDTWFDYIRLEERVGNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262
+ TW + + V + E R +Y A+ P +K W R Y N+ + +
Sbjct: 539 RKH-TWME--DADSCVAHNALECARAIYAYALQVFP--SKKSVWLRAAYFEKNHGTRESL 593
Query: 263 DA 264
+A
Sbjct: 594 EA 595
Score = 72 (30.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351
R+F K +++E LGNI ++L E+ L + W ++E+ + ERAR +
Sbjct: 676 RVFMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQEELMERAREAYNQG 735
Query: 352 IAQPILDLPEFLW 364
+ + P LW
Sbjct: 736 LKKCPHSTP--LW 746
>UNIPROTKB|Q9NYH9 [details] [associations]
symbol:UTP6 "U3 small nucleolar RNA-associated protein 6
homolog" species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005730
Gene3D:1.25.40.10 GO:GO:0006364 eggNOG:COG5191 KO:K14557
InterPro:IPR013949 Pfam:PF08640 EMBL:AF244135 EMBL:AF334386
EMBL:BC015454 EMBL:BC035325 EMBL:AJ272197 IPI:IPI00020128
RefSeq:NP_060898.2 UniGene:Hs.589862 ProteinModelPortal:Q9NYH9
SMR:Q9NYH9 IntAct:Q9NYH9 MINT:MINT-1435439 STRING:Q9NYH9
PhosphoSite:Q9NYH9 DMDM:134047946 SWISS-2DPAGE:Q9NYH9 PaxDb:Q9NYH9
PRIDE:Q9NYH9 Ensembl:ENST00000261708 GeneID:55813 KEGG:hsa:55813
UCSC:uc002hgq.3 CTD:55813 GeneCards:GC17M030187 HGNC:HGNC:18279
HPA:HPA025936 neXtProt:NX_Q9NYH9 PharmGKB:PA142672224
HOGENOM:HOG000285956 HOVERGEN:HBG051886 InParanoid:Q9NYH9
OMA:EKEQESC OrthoDB:EOG4RBQJ7 GenomeRNAi:55813 NextBio:60986
ArrayExpress:Q9NYH9 Bgee:Q9NYH9 CleanEx:HS_UTP6
Genevestigator:Q9NYH9 GermOnline:ENSG00000108651 Uniprot:Q9NYH9
Length = 597
Score = 90 (36.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 28/100 (28%), Positives = 47/100 (47%)
Query: 42 IFERWM-HWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM 100
+F+R W D + WLSY+ F ++ R +F ++ H + WI A +EM+
Sbjct: 95 VFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEME- 153
Query: 101 GEVDRARNVYECAVEIFLAD--DHDEAEQLFVAFAKFEEM 138
DR + E A ++FL H E +L+ + + E M
Sbjct: 154 ---DRLSS--ESARQLFLRALRFHPECPKLYKEYFRMELM 188
Score = 75 (31.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 35/142 (24%), Positives = 63/142 (44%)
Query: 128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDA 187
L++++A++ E G +E A ++K AL + + L K+L + + G G + A
Sbjct: 440 LWISWAEWSE-GAKSQEDTEA--VFKKALLAVIGADSVTLKNKYLDWAYRSG---GYKKA 493
Query: 188 IAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG--NQERVREVYERAIANVPPAEEKRY 245
A LQ P + D + I+ E+ N +RE YERA+ A+
Sbjct: 494 RAVFKSLQ-----ESRPFSVDFFRKMIQFEKEQESCNMANIREYYERALREFGSADSD-L 547
Query: 246 WQRYIYLWINYALYKEVDAGDL 267
W Y+ +N+ L + + G +
Sbjct: 548 WMDYMKEELNHPLGRPENCGQI 569
>RGD|1308702 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 RGD:1308702
GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10 CTD:55015
GeneTree:ENSGT00390000005033 KO:K13217 OrthoDB:EOG49GKG9
IPI:IPI00948194 RefSeq:XP_003750219.1 RefSeq:XP_003754228.1
UniGene:Rn.12521 Ensembl:ENSRNOT00000066702 GeneID:314171
KEGG:rno:314171 UCSC:RGD:1308702 ArrayExpress:D4A5S9 Uniprot:D4A5S9
Length = 664
Score = 93 (37.8 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 43/190 (22%), Positives = 87/190 (45%)
Query: 13 VTLSPRVDQLWNNY-IRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYIKFKLRYNEVQ 70
V +S +++ N + + E GN + F + + P D GW+ +++ + N +
Sbjct: 50 VRVSTEENEMANAVDLPVTETEGNFPPEFEKFWKTVETNPQDFTGWVYLLQYVEQENHLM 109
Query: 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE-IFLADDHDEAEQLF 129
AR F++ +PY W +AD E + + ++ VY ++ I L+ D L+
Sbjct: 110 AARKAFDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVD------LW 163
Query: 130 VAFAKF--EEMGCNCKETDRA-RCIYKFALDRIPKG---RAEDLYRKFLAFEKQYGD-RE 182
+ + F E + ET+ R ++ A+ + G R++ L+ ++ +E + G+ RE
Sbjct: 164 IHYINFLKETLDPGDPETNSTIRGTFEHAV--LAAGTDFRSDKLWEMYINWENEQGNLRE 221
Query: 183 --GIEDAIAG 190
+ D I G
Sbjct: 222 VTAVYDRILG 231
Score = 71 (30.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 37/168 (22%), Positives = 64/168 (38%)
Query: 193 RLQYEDGVRK-----NPMN---YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR 244
R +E+G+++ P+ W +Y+ E G ERV ++ER + + EE
Sbjct: 328 RWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEE-- 385
Query: 245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCL 304
WI YA Y E + +E R V+ + P ++ + E +
Sbjct: 386 -------FWIKYAKYMENHS--IEGVRHVFSRACTVHLPKKPMAH--MLWAAFEEQQ--- 431
Query: 305 GNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI 352
GNI+ R + + E + LE+ E A + + AI
Sbjct: 432 GNINEARIILRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAI 479
>UNIPROTKB|Q2KJJ0 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9913
"Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071001 "U4/U6
snRNP" evidence=IEA] [GO:0050681 "androgen receptor binding"
evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] [GO:0006403 "RNA
localization" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
EMBL:AAFC03042419 EMBL:BC105318 IPI:IPI00702400
RefSeq:NP_001039840.1 UniGene:Bt.40556 ProteinModelPortal:Q2KJJ0
STRING:Q2KJJ0 Ensembl:ENSBTAT00000015480 GeneID:534228
KEGG:bta:534228 CTD:24148 GeneTree:ENSGT00550000075016
HOVERGEN:HBG023330 InParanoid:Q2KJJ0 OrthoDB:EOG4FTVZW
NextBio:20876316 ArrayExpress:Q2KJJ0 Uniprot:Q2KJJ0
Length = 941
Score = 98 (39.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 50/242 (20%), Positives = 98/242 (40%)
Query: 26 YIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHP 84
YIR E ++ +++ + + +P+ W + ++ + E + AR + R V+C P
Sbjct: 376 YIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELE----EPEDARIMLSRAVECCP 431
Query: 85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144
++ W+ A E + AR V A E D H +++ AK EE N +
Sbjct: 432 TSVELWLALARLET----YENARKVLNKARENIPTDRH-----IWITAAKLEEANGNTQM 482
Query: 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP 204
++ I A+ + + ++ R+ + + D+ G MR G+ +
Sbjct: 483 VEK---IIDRAITSL-RANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEED 538
Query: 205 MNYDTWFDYIRLEERVGNQ--ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262
+ TW + + V + E R +Y A+ P +K W R Y N+ + +
Sbjct: 539 RKH-TWME--DADSCVAHNALECARAIYAYALQVFP--SKKSVWLRAAYFEKNHGTRESL 593
Query: 263 DA 264
+A
Sbjct: 594 EA 595
Score = 68 (29.0 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351
R+F K +++E LGN+ ++L E+ L+ + W ++E+ + E+AR +
Sbjct: 676 RVFMKSVKLEWVLGNLVAAQELCEEALKHYEDFPKLWMMKGQIEEQEELVEKAREAYNQG 735
Query: 352 IAQPILDLPEFLW 364
+ + P LW
Sbjct: 736 LKKCPHSTP--LW 746
>FB|FBgn0039600 [details] [associations]
symbol:CG1646 species:7227 "Drosophila melanogaster"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 InterPro:IPR001623 EMBL:AE014297 Gene3D:1.25.40.10
SMART:SM00271 GO:GO:0000398 GO:GO:0000381 eggNOG:COG5107
GO:GO:0005685 GeneTree:ENSGT00390000005033 KO:K13217 EMBL:AY051737
RefSeq:NP_001097957.1 RefSeq:NP_001097958.1 RefSeq:NP_651634.1
RefSeq:NP_733256.2 RefSeq:NP_788753.1 RefSeq:NP_788754.2
UniGene:Dm.31288 ProteinModelPortal:Q7KRW8 SMR:Q7KRW8 IntAct:Q7KRW8
MINT:MINT-820225 STRING:Q7KRW8 PaxDb:Q7KRW8 PRIDE:Q7KRW8
EnsemblMetazoa:FBtr0085322 GeneID:43399 KEGG:dme:Dmel_CG1646
UCSC:CG1646-RB FlyBase:FBgn0039600 InParanoid:Q7KRW8 OMA:IRWENES
OrthoDB:EOG4ZKH2F PhylomeDB:Q7KRW8 GenomeRNAi:43399 NextBio:833726
Bgee:Q7KRW8 Uniprot:Q7KRW8
Length = 1066
Score = 80 (33.2 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 52 DHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111
D GW +++ ++ + AR ++ + +PY W +AD+E + G V+E
Sbjct: 378 DFTGWTYLLQYVDNESDAEAAREAYDTFLSHYPYCYGYWRKYADYEKRKGIKANCYKVFE 437
Query: 112 CAVE 115
+E
Sbjct: 438 RGLE 441
Score = 72 (30.4 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 147 RARC--IYKFALDRIPKGRAEDLYRKFLAFEKQ-YGDREGIEDAIAGKMRLQYEDGVRKN 203
+A C +++ L+ IP + DL+ +L K +GD E +R QYE V+
Sbjct: 429 KANCYKVFERGLEAIPL--SVDLWIHYLMHVKSNHGDDETF-------VRSQYERAVKAC 479
Query: 204 PMNYDT---WFDYIRLEERVGNQERVREVYERAIANVP 238
+ + + W YIR E RV ++Y+R +A +P
Sbjct: 480 GLEFRSDKLWDAYIRWENESKRYHRVVQIYDRLLA-IP 516
Score = 57 (25.1 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWS---KYTE-LEKSLDETERARAIFELAI 352
I +E G +D CR+LY+ Y+E + A S KY L K + + A + A+
Sbjct: 819 INVERRRGALDKCRELYKHYIESTKNKGIAGSLAIKYARFLNKICHDLDAGLAALQQAL 877
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.140 0.451 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 365 365 0.00084 117 3 11 22 0.48 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 75
No. of states in DFA: 631 (67 KB)
Total size of DFA: 300 KB (2152 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.99u 0.14s 32.13t Elapsed: 00:00:01
Total cpu time: 32.06u 0.14s 32.20t Elapsed: 00:00:01
Start: Fri May 10 02:13:04 2013 End: Fri May 10 02:13:05 2013