BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036703
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYIKFKLRYN 67
+ + + L PR + W N G+ A + +++ + P E W + +
Sbjct: 24 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83
Query: 68 EVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
+ A +++ ++ P + AW N + K G+ D A Y+ A+E+
Sbjct: 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
E W + + + A +++ ++ P + AW N + K G+ D A Y+ A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 114 VEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA 173
+E+ D AE + + + G + D A Y+ AL+ P+ AE Y A
Sbjct: 62 LEL----DPRSAEAWYNLGNAYYKQG----DYDEAIEYYQKALELDPR-SAEAWYNLGNA 112
Query: 174 FEKQYGDREGIE 185
+ KQ E IE
Sbjct: 113 YYKQGDYDEAIE 124
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 39 ARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97
A + +++ + P++ E W + + + A +++ ++ +P N AW N +
Sbjct: 28 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAY 87
Query: 98 MKMGEVDRARNVYECAVEIF 117
K G+ D A Y+ A+E++
Sbjct: 88 YKQGDYDEAIEYYQKALELY 107
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
E W + + + A +++ ++ +P N AW N + K G+ D A Y+ A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 114 VEIF 117
+E++
Sbjct: 70 LELY 73
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
E W + + + Q+A +++ ++ P N SAW N + K G+ +A Y+ A
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 114 VEI 116
+E+
Sbjct: 70 LEL 72
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFE-------RWMHWMPDH---EGWLS 58
+++ VTL P N++ NLGNV +IF+ R + P+H G L+
Sbjct: 192 FEKAVTLDP-------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL 118
+ ++ + A + R ++ P+ A+ N A+ + G V A + Y A+ L
Sbjct: 245 CVYYE--QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--L 300
Query: 119 ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178
H ++ A + N +E R +Y+ AL+ P+ A + + +Q
Sbjct: 301 CPTHADS---LNNLANIKREQGNIEEAVR---LYRKALEVFPEFAAA--HSNLASVLQQQ 352
Query: 179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW 210
G +++A+ + Y++ +R +P D +
Sbjct: 353 GK---LQEAL-----MHYKEAIRISPTFADAY 376
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Query: 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
ID + + R + L P + N + G+VA A + + P H L+ +
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 61 -KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
K ++ A ++ + ++ P +A N A + G++ A Y+ A+ I
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE 115
WL+ + L N++ AR F + P AWI FA GE D+A + Y A
Sbjct: 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435
Query: 116 IF 117
+F
Sbjct: 436 LF 437
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
E W + + + A +++ ++ P N AW N + K G+ D A Y+ A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 114 VEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161
+E+ D + AE + + + G + D A Y+ AL+ P
Sbjct: 70 LEL----DPNNAEAWYNLGNAYYKQG----DYDEAIEYYQKALELDPN 109
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
E W + + + A +++ ++ P N AW N + K G+ D A Y+ A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 114 VEI 116
+E+
Sbjct: 70 LEL 72
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
ID R ++R+V P + W YI E N ++F+R + + + W Y+
Sbjct: 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87
Query: 62 F 62
+
Sbjct: 88 Y 88
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 52/222 (23%)
Query: 69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE-CAVEIFLADDHDEAEQ 127
+ +AR +ERLV P + W + + E+K D+ +++ C +++ H + +
Sbjct: 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL----HIDLWK 83
Query: 128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIP-KGRAEDLYRKFLAFEKQYGDREGIED 186
++++ + E G ++ Y FALD+I + + ++ ++ F K G+E
Sbjct: 84 CYLSYVR-ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLK------GVE- 135
Query: 187 AIAGKMRLQYEDGVRK-------NPM-NYDT-WFDYIRLEERVG---------------- 221
A+ Q VR+ NPM N + W DY + EE +
Sbjct: 136 AVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYM 195
Query: 222 NQERVREVYE-------RAIANVPP------AEEKRYWQRYI 250
N RV + YE R +VPP A++ W++YI
Sbjct: 196 NARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 24/195 (12%)
Query: 1 FIDHGRNAWDRVV-TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSY 59
F D N ++R + TL + L+ Y EE+ I+ R + + D + L Y
Sbjct: 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA-IEDIDPTLVY 359
Query: 60 I---KFKLRYNEVQRARHIFERL-----VQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111
I KF R ++ R IF++ + H Y +A + + + ++V
Sbjct: 360 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY--------CSKDKSVAF 411
Query: 112 CAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR--IPKGRAEDLYR 169
E+ L D E + + + + E + R +++ L +P ++ +++
Sbjct: 412 KIFELGLKKYGDIPEYVLA----YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 467
Query: 170 KFLAFEKQYGDREGI 184
+FLAFE GD I
Sbjct: 468 RFLAFESNIGDLASI 482
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113
E W + + + A +++ ++ P + AW N + K G+ D A Y+ A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 114 VEI 116
+E+
Sbjct: 64 LEL 66
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI 151
D K + D+A N YE A++++ A Q F+ K+E G K++ RA+C
Sbjct: 13 DLASKAAQEDKAGN-YEEALQLY-----QHAVQYFLHVVKYEAQGDKAKQSIRAKCT 63
>pdb|2CPT|A Chain A, Solution Structure Of Mit Domain From Human Skd1
Length = 117
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF 154
D K + D+A N YE A++++ A Q F+ K+E G K++ RA+C
Sbjct: 20 DLASKAAQEDKAGN-YEEALQLY-----QHAVQYFLHVVKYEAQGDKAKQSIRAKCTE-- 71
Query: 155 ALDRIPK 161
LDR K
Sbjct: 72 YLDRAEK 78
>pdb|1WR0|A Chain A, Structural Characterization Of The Mit Domain From Human
Vps4b
Length = 81
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARC 150
D K + D+A N YE A++++ A Q F+ K+E G K++ RA+C
Sbjct: 17 DLASKAAQEDKAGN-YEEALQLY-----QHAVQYFLHVVKYEAQGDKAKQSIRAKC 66
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
pdb|2OND|B Chain B, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
Length = 308
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 24/195 (12%)
Query: 1 FIDHGRNAWDRVV-TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSY 59
F D N ++R + TL + L+ Y EE+ I+ R + + D + L Y
Sbjct: 79 FSDEAANIYERAISTLLKKNXLLYFAYADYEESRXKYEKVHSIYNRLLA-IEDIDPTLVY 137
Query: 60 I---KFKLRYNEVQRARHIFERL-----VQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111
I KF R ++ R IF++ + H Y +A + + ++V
Sbjct: 138 IQYXKFARRAEGIKSGRXIFKKAREDARTRHHVYVTAALXEYY--------CSKDKSVAF 189
Query: 112 CAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR--IPKGRAEDLYR 169
E+ L D E + + + + E + R +++ L +P ++ +++
Sbjct: 190 KIFELGLKKYGDIPEYVLA----YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245
Query: 170 KFLAFEKQYGDREGI 184
+FLAFE GD I
Sbjct: 246 RFLAFESNIGDLASI 260
>pdb|3ESL|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
pdb|3ESL|B Chain B, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
Length = 202
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 205 MNYDTWFD--YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA-LYKE 261
++Y W YI ++ G QE +R ER + + E R R++ +WI Y L+
Sbjct: 34 LDYMIWISTSYIEVDSESG-QEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLFLS 92
Query: 262 VDAGDLERT------RDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCR 311
+ + E T + + L +FY FS +E + F + ++ L LG + CR
Sbjct: 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLE-AKVLLELGAENNCR 147
>pdb|2JQH|A Chain A, Vps4b Mit
pdb|2JQK|A Chain A, Vps4b Mit-Chmp2b Complex
Length = 89
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARC 150
D K + D+A N YE A++++ A Q F+ K+E G K++ RA+C
Sbjct: 16 DLASKAAQEDKAGN-YEEALQLY-----QHAVQYFLHVVKYEAQGDKAKQSIRAKC 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,767,117
Number of Sequences: 62578
Number of extensions: 509068
Number of successful extensions: 1558
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1489
Number of HSP's gapped (non-prelim): 70
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)