Query 036703
Match_columns 365
No_of_seqs 401 out of 1367
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 04:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1915 Cell cycle control pro 100.0 1.2E-48 2.7E-53 314.2 35.8 358 2-365 123-511 (677)
2 KOG4626 O-linked N-acetylgluco 100.0 1.5E-39 3.2E-44 270.2 26.6 326 1-362 131-492 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 3E-39 6.5E-44 268.4 24.9 328 3-356 99-453 (966)
4 KOG0495 HAT repeat protein [RN 100.0 4.2E-35 9.1E-40 245.0 33.6 328 2-358 532-884 (913)
5 KOG1915 Cell cycle control pro 100.0 3.4E-34 7.3E-39 231.3 33.5 333 1-356 156-538 (677)
6 TIGR00990 3a0801s09 mitochondr 100.0 1.8E-33 4E-38 254.8 39.0 327 1-356 142-573 (615)
7 PRK15174 Vi polysaccharide exp 100.0 5.4E-33 1.2E-37 251.0 38.9 326 1-361 57-388 (656)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-31 7.2E-36 253.2 40.2 319 3-356 482-801 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-31 6.5E-36 253.5 39.5 319 2-356 549-868 (899)
10 PRK11447 cellulose synthase su 100.0 3.6E-31 7.9E-36 254.5 40.0 328 1-360 284-706 (1157)
11 PRK15174 Vi polysaccharide exp 100.0 7.2E-30 1.6E-34 230.8 37.9 313 1-356 91-405 (656)
12 KOG0495 HAT repeat protein [RN 100.0 1.3E-29 2.8E-34 212.3 34.7 319 2-356 422-848 (913)
13 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-29 2.8E-34 229.8 37.0 312 21-358 128-500 (615)
14 PRK11447 cellulose synthase su 100.0 5.8E-29 1.3E-33 239.3 39.1 322 1-353 318-739 (1157)
15 PRK10049 pgaA outer membrane p 100.0 1.1E-27 2.4E-32 221.0 39.9 337 1-361 64-462 (765)
16 PRK11788 tetratricopeptide rep 100.0 4.6E-27 9.9E-32 203.1 34.7 310 20-361 35-354 (389)
17 PRK10049 pgaA outer membrane p 100.0 1E-26 2.2E-31 214.7 38.6 335 1-361 30-428 (765)
18 KOG0547 Translocase of outer m 100.0 1.4E-27 3.1E-32 193.9 28.7 326 1-355 130-567 (606)
19 PRK11788 tetratricopeptide rep 100.0 2.2E-25 4.8E-30 192.6 34.4 287 1-319 50-346 (389)
20 KOG2002 TPR-containing nuclear 100.0 3.6E-25 7.8E-30 193.7 33.2 330 2-356 146-527 (1018)
21 PRK09782 bacteriophage N4 rece 100.0 2E-24 4.3E-29 200.1 38.3 316 2-356 358-708 (987)
22 KOG2047 mRNA splicing factor [ 99.9 5.3E-24 1.1E-28 178.6 33.8 321 3-349 364-718 (835)
23 KOG2076 RNA polymerase III tra 99.9 1.8E-24 3.9E-29 188.0 32.0 337 1-355 154-513 (895)
24 KOG1126 DNA-binding cell divis 99.9 2.4E-25 5.3E-30 187.7 25.3 303 21-357 318-623 (638)
25 PRK09782 bacteriophage N4 rece 99.9 1.5E-24 3.3E-29 200.8 32.7 298 5-340 460-759 (987)
26 KOG1126 DNA-binding cell divis 99.9 8.9E-25 1.9E-29 184.3 25.7 290 2-326 335-626 (638)
27 PRK14574 hmsH outer membrane p 99.9 7.1E-23 1.5E-27 186.2 38.4 338 1-360 49-518 (822)
28 KOG0547 Translocase of outer m 99.9 8.9E-24 1.9E-28 172.0 28.5 307 21-357 116-535 (606)
29 KOG1155 Anaphase-promoting com 99.9 4.1E-23 8.9E-28 167.1 31.6 315 2-354 180-536 (559)
30 PF13429 TPR_15: Tetratricopep 99.9 3.7E-26 7.9E-31 187.5 13.4 261 58-354 13-277 (280)
31 KOG1155 Anaphase-promoting com 99.9 3.1E-22 6.7E-27 162.1 32.9 307 17-354 161-495 (559)
32 KOG2002 TPR-containing nuclear 99.9 9.6E-23 2.1E-27 178.7 32.3 323 2-354 110-481 (1018)
33 PLN03218 maturation of RBCL 1; 99.9 4.1E-22 8.8E-27 186.1 38.6 318 3-354 454-783 (1060)
34 PF13429 TPR_15: Tetratricopep 99.9 1.2E-25 2.6E-30 184.5 12.1 270 14-320 4-277 (280)
35 PLN03218 maturation of RBCL 1; 99.9 1.5E-21 3.2E-26 182.4 40.2 316 2-355 422-749 (1060)
36 KOG2047 mRNA splicing factor [ 99.9 3.3E-22 7.1E-27 168.0 31.4 170 2-177 84-297 (835)
37 PLN03081 pentatricopeptide (PP 99.9 2.8E-22 6.2E-27 184.7 32.5 298 20-356 259-559 (697)
38 TIGR00540 hemY_coli hemY prote 99.9 9.5E-22 2.1E-26 169.4 33.5 301 25-354 89-399 (409)
39 TIGR00540 hemY_coli hemY prote 99.9 1.8E-21 3.9E-26 167.6 32.9 293 1-320 99-399 (409)
40 KOG1173 Anaphase-promoting com 99.9 2.3E-21 5.1E-26 160.8 31.3 328 1-358 156-522 (611)
41 PLN03081 pentatricopeptide (PP 99.9 3.5E-22 7.5E-27 184.1 29.3 315 2-358 174-527 (697)
42 KOG1173 Anaphase-promoting com 99.9 8.7E-22 1.9E-26 163.3 26.7 289 18-334 242-532 (611)
43 PRK10747 putative protoheme IX 99.9 1.2E-20 2.5E-25 161.8 34.1 296 26-358 90-394 (398)
44 PLN03077 Protein ECB2; Provisi 99.9 4.6E-21 9.9E-26 180.9 33.5 324 1-363 369-729 (857)
45 KOG0624 dsRNA-activated protei 99.9 8.7E-21 1.9E-25 148.3 28.4 324 16-358 34-374 (504)
46 PRK14574 hmsH outer membrane p 99.9 4.5E-20 9.7E-25 168.1 36.4 326 14-358 28-483 (822)
47 KOG2076 RNA polymerase III tra 99.9 5.2E-20 1.1E-24 160.6 32.2 317 20-358 139-482 (895)
48 PRK10747 putative protoheme IX 99.9 8.3E-20 1.8E-24 156.5 33.1 286 1-321 99-391 (398)
49 KOG0624 dsRNA-activated protei 99.9 3.8E-20 8.2E-25 144.8 26.4 301 1-332 53-382 (504)
50 PLN03077 Protein ECB2; Provisi 99.9 4.1E-20 8.9E-25 174.5 32.1 314 1-359 338-691 (857)
51 KOG1174 Anaphase-promoting com 99.9 4.7E-20 1E-24 147.6 27.3 295 9-338 221-518 (564)
52 KOG1070 rRNA processing protei 99.9 4.6E-20 9.9E-25 167.1 29.0 251 5-280 1443-1700(1710)
53 PRK12370 invasion protein regu 99.9 2.6E-20 5.7E-25 166.3 26.0 234 15-278 251-500 (553)
54 KOG1129 TPR repeat-containing 99.9 4.8E-21 1E-25 148.8 18.0 260 31-356 190-460 (478)
55 PRK11189 lipoprotein NlpI; Pro 99.9 1E-19 2.2E-24 149.6 25.6 223 3-241 43-270 (296)
56 KOG1129 TPR repeat-containing 99.9 5.7E-21 1.2E-25 148.4 16.8 201 130-361 227-430 (478)
57 PRK12370 invasion protein regu 99.9 5.1E-19 1.1E-23 158.1 31.1 251 67-358 275-539 (553)
58 KOG1914 mRNA cleavage and poly 99.9 3.5E-18 7.7E-23 141.4 32.8 333 10-354 10-464 (656)
59 COG3063 PilF Tfp pilus assembl 99.9 2.1E-19 4.5E-24 133.2 23.0 207 20-242 35-242 (250)
60 KOG4162 Predicted calmodulin-b 99.9 2.6E-18 5.7E-23 147.8 32.9 331 4-361 375-789 (799)
61 KOG1174 Anaphase-promoting com 99.9 1.6E-18 3.6E-23 138.9 28.8 299 26-359 204-505 (564)
62 PRK11189 lipoprotein NlpI; Pro 99.9 2.9E-19 6.2E-24 146.9 24.2 228 100-362 39-273 (296)
63 KOG0548 Molecular co-chaperone 99.9 5.3E-18 1.2E-22 140.4 30.8 342 1-357 17-458 (539)
64 KOG1125 TPR repeat-containing 99.9 2.2E-19 4.9E-24 149.7 21.2 261 57-345 289-562 (579)
65 TIGR02521 type_IV_pilW type IV 99.9 1.7E-18 3.8E-23 138.9 25.9 204 19-238 30-234 (234)
66 COG2956 Predicted N-acetylgluc 99.8 3.9E-17 8.4E-22 127.1 30.4 292 30-352 45-345 (389)
67 COG3063 PilF Tfp pilus assembl 99.8 1.4E-18 3.1E-23 128.9 21.1 190 1-209 50-243 (250)
68 KOG1156 N-terminal acetyltrans 99.8 3.5E-17 7.6E-22 138.4 32.0 342 1-358 22-438 (700)
69 COG2956 Predicted N-acetylgluc 99.8 6E-17 1.3E-21 126.0 30.2 270 1-303 50-327 (389)
70 TIGR02521 type_IV_pilW type IV 99.8 8.6E-18 1.9E-22 134.8 25.3 202 53-280 31-232 (234)
71 KOG2003 TPR repeat-containing 99.8 5.9E-18 1.3E-22 137.7 23.9 284 21-339 420-708 (840)
72 KOG2003 TPR repeat-containing 99.8 1.2E-18 2.6E-23 141.7 17.9 333 3-357 218-658 (840)
73 KOG1125 TPR repeat-containing 99.8 4.9E-18 1.1E-22 141.8 21.8 260 24-311 289-562 (579)
74 KOG1070 rRNA processing protei 99.8 2.5E-17 5.3E-22 149.8 25.8 253 71-352 1442-1698(1710)
75 KOG4162 Predicted calmodulin-b 99.8 4.6E-17 9.9E-22 140.3 26.1 291 3-326 461-789 (799)
76 KOG1914 mRNA cleavage and poly 99.8 2.9E-15 6.3E-20 124.4 32.7 333 2-356 35-503 (656)
77 KOG0548 Molecular co-chaperone 99.8 1.6E-15 3.5E-20 125.9 31.3 312 1-352 51-487 (539)
78 KOG1127 TPR repeat-containing 99.8 1.7E-17 3.7E-22 146.4 20.8 321 4-350 510-909 (1238)
79 KOG1840 Kinesin light chain [C 99.8 1.6E-16 3.5E-21 135.9 24.4 262 16-320 195-479 (508)
80 PLN02789 farnesyltranstransfer 99.8 4.9E-16 1.1E-20 127.4 25.2 205 2-220 53-268 (320)
81 cd05804 StaR_like StaR_like; a 99.8 4E-15 8.6E-20 127.1 31.5 316 16-355 2-337 (355)
82 PLN02789 farnesyltranstransfer 99.8 1.5E-15 3.3E-20 124.5 27.4 215 16-241 33-255 (320)
83 KOG2376 Signal recognition par 99.8 1.7E-14 3.6E-19 121.2 32.3 335 1-359 27-492 (652)
84 KOG1840 Kinesin light chain [C 99.8 3.1E-15 6.6E-20 128.2 28.7 259 50-353 195-478 (508)
85 KOG1127 TPR repeat-containing 99.8 2.4E-16 5.2E-21 139.3 20.7 339 3-359 475-884 (1238)
86 KOG1156 N-terminal acetyltrans 99.8 5.4E-14 1.2E-18 119.4 33.7 328 2-352 57-466 (700)
87 KOG0550 Molecular chaperone (D 99.7 9.3E-16 2E-20 123.3 18.7 281 57-356 53-352 (486)
88 COG3071 HemY Uncharacterized e 99.7 2.4E-13 5.2E-18 109.3 31.9 300 29-361 93-398 (400)
89 KOG1258 mRNA processing protei 99.7 5.8E-14 1.2E-18 118.9 28.4 320 4-346 63-421 (577)
90 KOG0550 Molecular chaperone (D 99.7 5.2E-15 1.1E-19 119.1 20.2 269 28-323 57-353 (486)
91 COG5107 RNA14 Pre-mRNA 3'-end 99.7 1.1E-13 2.3E-18 112.9 27.3 337 9-356 31-497 (660)
92 PRK15359 type III secretion sy 99.7 1.5E-15 3.3E-20 110.5 15.4 124 6-137 13-137 (144)
93 TIGR03302 OM_YfiO outer membra 99.7 9.7E-15 2.1E-19 117.0 21.2 188 16-238 29-234 (235)
94 KOG1258 mRNA processing protei 99.7 1.3E-12 2.9E-17 110.8 33.4 309 2-339 95-489 (577)
95 PF12569 NARP1: NMDA receptor- 99.7 7.8E-13 1.7E-17 114.9 32.5 279 20-321 4-335 (517)
96 cd05804 StaR_like StaR_like; a 99.7 4.4E-13 9.6E-18 114.5 30.7 295 2-321 22-337 (355)
97 TIGR03302 OM_YfiO outer membra 99.7 1.5E-14 3.2E-19 115.9 19.6 155 1-160 48-234 (235)
98 KOG2396 HAT (Half-A-TPR) repea 99.7 3.1E-12 6.8E-17 105.9 31.8 341 4-356 89-561 (568)
99 COG3071 HemY Uncharacterized e 99.6 3.5E-12 7.6E-17 102.7 30.3 284 1-320 99-390 (400)
100 KOG1128 Uncharacterized conser 99.6 1.8E-13 3.9E-18 117.9 24.3 220 20-281 398-617 (777)
101 PRK10370 formate-dependent nit 99.6 1E-14 2.2E-19 112.0 15.3 119 2-121 55-177 (198)
102 KOG3060 Uncharacterized conser 99.6 1.3E-12 2.9E-17 98.8 23.8 177 26-217 58-235 (289)
103 PRK15359 type III secretion sy 99.6 4.7E-14 1E-18 102.7 14.7 113 40-162 13-125 (144)
104 KOG3060 Uncharacterized conser 99.6 2.4E-12 5.2E-17 97.4 23.8 189 68-281 27-221 (289)
105 PRK10370 formate-dependent nit 99.6 2E-13 4.4E-18 104.8 16.8 123 33-163 52-178 (198)
106 PRK15179 Vi polysaccharide bio 99.6 3.2E-13 7E-18 121.6 19.9 142 12-161 78-220 (694)
107 TIGR02552 LcrH_SycD type III s 99.6 2.9E-13 6.2E-18 98.4 15.6 114 7-121 4-118 (135)
108 KOG3785 Uncharacterized conser 99.6 1.6E-11 3.4E-16 97.6 25.8 189 2-216 38-228 (557)
109 PRK14720 transcript cleavage f 99.6 4.7E-12 1E-16 115.2 25.1 242 16-337 27-269 (906)
110 PRK14720 transcript cleavage f 99.5 2.3E-12 4.9E-17 117.2 22.9 206 1-241 46-257 (906)
111 PF12569 NARP1: NMDA receptor- 99.5 2.3E-11 5E-16 105.9 27.3 272 54-355 5-292 (517)
112 KOG2376 Signal recognition par 99.5 1.8E-10 3.8E-15 97.5 30.6 297 27-350 19-401 (652)
113 PF05843 Suf: Suppressor of fo 99.5 1.7E-12 3.7E-17 105.6 17.1 137 55-207 3-141 (280)
114 TIGR02552 LcrH_SycD type III s 99.5 2.2E-12 4.8E-17 93.8 14.7 115 41-163 4-119 (135)
115 COG5010 TadD Flp pilus assembl 99.5 1.2E-11 2.6E-16 94.5 18.4 168 5-183 52-220 (257)
116 COG5107 RNA14 Pre-mRNA 3'-end 99.5 7.1E-10 1.5E-14 91.1 29.2 330 2-356 58-533 (660)
117 PRK15179 Vi polysaccharide bio 99.5 8.9E-11 1.9E-15 106.1 26.0 144 79-240 78-221 (694)
118 KOG1128 Uncharacterized conser 99.4 8.3E-12 1.8E-16 107.9 16.3 219 86-355 397-617 (777)
119 PF05843 Suf: Suppressor of fo 99.4 5.1E-12 1.1E-16 102.8 14.5 137 21-162 2-140 (280)
120 PRK15363 pathogenicity island 99.4 2E-11 4.3E-16 87.1 15.5 106 13-119 27-134 (157)
121 COG5010 TadD Flp pilus assembl 99.4 5.2E-11 1.1E-15 91.1 18.2 178 37-233 50-228 (257)
122 KOG0128 RNA-binding protein SA 99.4 1.5E-09 3.3E-14 95.5 28.6 334 6-355 99-527 (881)
123 KOG0553 TPR repeat-containing 99.4 3.4E-12 7.4E-17 99.3 11.2 94 27-121 88-182 (304)
124 KOG2396 HAT (Half-A-TPR) repea 99.4 5.1E-09 1.1E-13 87.3 30.1 95 38-137 89-185 (568)
125 PF04733 Coatomer_E: Coatomer 99.4 2.8E-11 6E-16 98.4 16.9 227 22-281 37-266 (290)
126 PF04733 Coatomer_E: Coatomer 99.4 4.1E-11 9E-16 97.4 16.7 254 30-325 11-270 (290)
127 KOG3785 Uncharacterized conser 99.4 3.4E-09 7.4E-14 84.6 25.4 329 1-357 72-493 (557)
128 PRK04841 transcriptional regul 99.4 7.7E-09 1.7E-13 99.6 33.3 320 20-356 409-762 (903)
129 COG4783 Putative Zn-dependent 99.3 7.4E-10 1.6E-14 92.1 21.1 154 51-239 303-457 (484)
130 COG4235 Cytochrome c biogenesi 99.3 2E-10 4.3E-15 90.3 16.8 119 2-121 138-260 (287)
131 KOG4340 Uncharacterized conser 99.3 1E-07 2.2E-12 74.6 31.0 153 1-161 25-214 (459)
132 PRK04841 transcriptional regul 99.3 1.3E-08 2.8E-13 98.1 32.7 303 2-323 425-763 (903)
133 PRK15363 pathogenicity island 99.3 1.5E-10 3.3E-15 82.6 14.1 105 48-160 28-134 (157)
134 COG4783 Putative Zn-dependent 99.3 8.4E-10 1.8E-14 91.8 19.6 134 16-157 302-436 (484)
135 KOG0553 TPR repeat-containing 99.3 1.7E-10 3.7E-15 90.0 12.7 113 57-179 85-197 (304)
136 PLN03088 SGT1, suppressor of 99.3 1.7E-10 3.7E-15 97.3 13.7 108 23-135 5-113 (356)
137 PLN03088 SGT1, suppressor of 99.2 4E-10 8.8E-15 95.1 15.4 100 1-100 17-117 (356)
138 PF13525 YfiO: Outer membrane 99.2 6.7E-09 1.4E-13 80.6 20.3 158 20-182 5-195 (203)
139 PF14938 SNAP: Soluble NSF att 99.2 7.6E-09 1.6E-13 84.8 21.7 233 35-327 30-273 (282)
140 PF09976 TPR_21: Tetratricopep 99.2 6.9E-10 1.5E-14 81.3 13.6 112 2-114 27-145 (145)
141 PRK10866 outer membrane biogen 99.2 6.4E-09 1.4E-13 82.6 19.4 160 20-183 32-230 (243)
142 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.1E-09 2.4E-14 77.6 13.8 101 20-121 2-109 (119)
143 PRK10866 outer membrane biogen 99.2 1.8E-08 3.9E-13 80.1 21.5 184 53-276 32-237 (243)
144 PF13525 YfiO: Outer membrane 99.2 1E-08 2.2E-13 79.6 19.5 182 53-270 5-197 (203)
145 cd00189 TPR Tetratricopeptide 99.2 6.8E-10 1.5E-14 75.3 11.6 94 23-116 3-97 (100)
146 cd00189 TPR Tetratricopeptide 99.2 7.5E-10 1.6E-14 75.1 11.7 84 1-84 15-99 (100)
147 TIGR02795 tol_pal_ybgF tol-pal 99.2 8.1E-10 1.8E-14 78.3 11.9 105 54-163 3-110 (119)
148 CHL00033 ycf3 photosystem I as 99.2 1.7E-09 3.6E-14 81.6 14.1 118 3-121 16-153 (168)
149 PF09976 TPR_21: Tetratricopep 99.2 4.2E-09 9.2E-14 77.1 15.6 116 32-156 23-145 (145)
150 PF13414 TPR_11: TPR repeat; P 99.1 1.4E-10 3E-15 73.1 6.4 66 291-356 3-69 (69)
151 KOG2053 Mitochondrial inherita 99.1 2.9E-06 6.3E-11 76.2 34.7 119 1-121 24-143 (932)
152 PF13414 TPR_11: TPR repeat; P 99.1 5.8E-10 1.2E-14 70.3 8.9 63 54-116 4-67 (69)
153 COG4235 Cytochrome c biogenesi 99.1 3.9E-09 8.4E-14 83.1 14.7 120 36-163 138-261 (287)
154 PRK02603 photosystem I assembl 99.1 6.9E-09 1.5E-13 78.5 15.4 102 18-120 33-152 (172)
155 KOG4340 Uncharacterized conser 99.1 3.1E-07 6.8E-12 72.0 24.3 292 31-348 21-333 (459)
156 COG3898 Uncharacterized membra 99.1 6.3E-07 1.4E-11 72.9 26.6 148 103-280 245-392 (531)
157 PF12895 Apc3: Anaphase-promot 99.1 4.3E-10 9.3E-15 73.8 7.5 80 33-113 2-84 (84)
158 PRK11906 transcriptional regul 99.1 2.6E-08 5.6E-13 83.5 18.8 160 12-179 240-422 (458)
159 PF12895 Apc3: Anaphase-promot 99.1 1.2E-09 2.5E-14 71.8 8.7 81 66-155 2-84 (84)
160 KOG1130 Predicted G-alpha GTPa 99.1 1.1E-08 2.4E-13 83.4 15.7 287 27-355 24-345 (639)
161 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 8.9E-09 1.9E-13 86.6 15.9 124 22-155 171-294 (395)
162 PF13432 TPR_16: Tetratricopep 99.1 1.2E-09 2.6E-14 67.9 8.1 61 59-120 3-63 (65)
163 PRK10153 DNA-binding transcrip 99.1 1.9E-08 4E-13 88.6 18.0 144 11-163 328-487 (517)
164 PRK10803 tol-pal system protei 99.0 8.3E-09 1.8E-13 82.5 13.8 105 54-163 143-251 (263)
165 PRK02603 photosystem I assembl 99.0 2.3E-08 5.1E-13 75.6 15.6 95 53-155 35-132 (172)
166 PF12688 TPR_5: Tetratrico pep 99.0 3.2E-08 6.8E-13 68.6 14.3 96 21-116 2-104 (120)
167 CHL00033 ycf3 photosystem I as 99.0 5.9E-09 1.3E-13 78.6 11.6 128 222-361 14-156 (168)
168 PF13432 TPR_16: Tetratricopep 99.0 2.4E-09 5.2E-14 66.4 7.9 63 25-87 2-65 (65)
169 PF14938 SNAP: Soluble NSF att 99.0 3.8E-08 8.2E-13 80.7 16.8 205 20-237 35-267 (282)
170 PRK11906 transcriptional regul 99.0 3.2E-08 7E-13 83.0 16.3 149 2-157 274-435 (458)
171 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 1.5E-08 3.3E-13 85.2 14.2 110 1-113 184-294 (395)
172 PRK10153 DNA-binding transcrip 99.0 1.2E-08 2.5E-13 89.9 14.0 118 2-121 358-486 (517)
173 PRK15331 chaperone protein Sic 99.0 1.1E-08 2.3E-13 73.6 11.2 102 15-116 32-134 (165)
174 KOG3617 WD40 and TPR repeat-co 99.0 2E-06 4.4E-11 76.6 27.2 100 53-156 858-994 (1416)
175 PRK10803 tol-pal system protei 99.0 6.5E-08 1.4E-12 77.4 15.5 101 20-121 142-250 (263)
176 COG3898 Uncharacterized membra 98.9 1.3E-05 2.8E-10 65.6 30.6 292 27-355 91-393 (531)
177 PF14559 TPR_19: Tetratricopep 98.9 6.9E-09 1.5E-13 65.1 7.7 66 64-134 2-67 (68)
178 COG0457 NrfG FOG: TPR repeat [ 98.9 4.1E-06 8.8E-11 67.4 25.7 223 3-239 40-268 (291)
179 KOG3081 Vesicle coat complex C 98.9 2.3E-06 5.1E-11 66.1 21.5 69 267-341 189-257 (299)
180 PF14559 TPR_19: Tetratricopep 98.9 7.4E-09 1.6E-13 65.0 6.9 65 31-95 2-67 (68)
181 KOG0128 RNA-binding protein SA 98.9 5.6E-06 1.2E-10 73.8 25.7 97 250-352 461-561 (881)
182 KOG0543 FKBP-type peptidyl-pro 98.9 1.2E-07 2.6E-12 77.7 14.3 131 23-161 211-358 (397)
183 KOG3081 Vesicle coat complex C 98.9 8.5E-06 1.8E-10 63.1 23.0 229 20-281 41-272 (299)
184 KOG2053 Mitochondrial inherita 98.9 4.2E-05 9E-10 69.1 30.6 231 32-281 21-256 (932)
185 KOG3617 WD40 and TPR repeat-co 98.8 1.6E-06 3.6E-11 77.1 21.3 116 20-155 757-884 (1416)
186 COG0457 NrfG FOG: TPR repeat [ 98.8 2.8E-05 6.1E-10 62.4 28.6 223 33-281 36-266 (291)
187 PF13371 TPR_9: Tetratricopept 98.8 5.1E-08 1.1E-12 62.1 8.4 62 28-89 3-65 (73)
188 KOG1130 Predicted G-alpha GTPa 98.8 3.6E-07 7.9E-12 74.8 14.6 289 2-340 33-370 (639)
189 COG4785 NlpI Lipoprotein NlpI, 98.8 2.2E-06 4.8E-11 64.2 17.3 196 20-240 65-270 (297)
190 PF08424 NRDE-2: NRDE-2, neces 98.8 1.1E-06 2.3E-11 73.4 17.8 148 7-158 6-183 (321)
191 KOG0543 FKBP-type peptidyl-pro 98.8 3.1E-07 6.6E-12 75.4 13.7 140 210-356 211-357 (397)
192 COG4785 NlpI Lipoprotein NlpI, 98.8 4.6E-06 9.9E-11 62.5 18.4 201 53-281 65-267 (297)
193 COG4700 Uncharacterized protei 98.8 3.2E-06 6.9E-11 61.7 16.9 156 36-204 72-228 (251)
194 PRK15331 chaperone protein Sic 98.8 1.3E-07 2.8E-12 68.1 9.9 97 54-158 38-134 (165)
195 PF13371 TPR_9: Tetratricopept 98.7 1E-07 2.2E-12 60.7 8.3 61 60-121 2-62 (73)
196 PF12688 TPR_5: Tetratrico pep 98.7 5E-07 1.1E-11 62.6 12.1 99 54-157 2-103 (120)
197 COG4105 ComL DNA uptake lipopr 98.7 2E-05 4.3E-10 61.2 21.0 180 86-280 33-232 (254)
198 KOG1941 Acetylcholine receptor 98.7 2.9E-05 6.4E-10 62.9 22.5 313 24-352 10-358 (518)
199 KOG2471 TPR repeat-containing 98.7 3.7E-06 7.9E-11 70.6 17.6 326 12-352 232-682 (696)
200 COG1729 Uncharacterized protei 98.7 5.1E-07 1.1E-11 70.5 11.8 103 56-163 144-249 (262)
201 COG4105 ComL DNA uptake lipopr 98.7 8.3E-06 1.8E-10 63.3 18.1 158 20-182 34-221 (254)
202 COG4700 Uncharacterized protei 98.7 2.2E-05 4.7E-10 57.5 18.9 154 65-235 68-221 (251)
203 KOG4507 Uncharacterized conser 98.7 2.4E-05 5.2E-10 67.4 22.1 114 6-120 199-315 (886)
204 PF13512 TPR_18: Tetratricopep 98.7 2E-06 4.4E-11 60.6 13.3 101 20-121 10-132 (142)
205 COG1729 Uncharacterized protei 98.6 2.6E-06 5.6E-11 66.7 14.2 98 23-121 144-248 (262)
206 PF06552 TOM20_plant: Plant sp 98.6 1.1E-06 2.3E-11 64.1 10.7 85 2-86 7-113 (186)
207 KOG1941 Acetylcholine receptor 98.6 6.3E-05 1.4E-09 61.1 21.5 303 2-320 22-360 (518)
208 KOG4234 TPR repeat-containing 98.6 2.6E-06 5.7E-11 62.9 12.2 98 23-121 98-201 (271)
209 PF13512 TPR_18: Tetratricopep 98.6 3.4E-06 7.4E-11 59.5 12.2 106 53-163 10-133 (142)
210 PF08424 NRDE-2: NRDE-2, neces 98.6 1E-05 2.2E-10 67.6 17.1 156 110-281 8-184 (321)
211 PF13428 TPR_14: Tetratricopep 98.5 1.7E-07 3.8E-12 52.5 4.3 43 291-333 1-43 (44)
212 PF13424 TPR_12: Tetratricopep 98.5 5.2E-07 1.1E-11 58.2 7.0 72 84-158 2-75 (78)
213 PF13428 TPR_14: Tetratricopep 98.5 3.6E-07 7.8E-12 51.2 5.2 42 54-95 2-43 (44)
214 KOG4555 TPR repeat-containing 98.4 1.1E-05 2.4E-10 55.2 11.5 90 27-116 50-144 (175)
215 KOG4555 TPR repeat-containing 98.4 7.3E-06 1.6E-10 56.1 10.5 97 59-159 49-145 (175)
216 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 4E-06 8.8E-11 70.6 11.3 69 15-83 70-142 (453)
217 KOG2796 Uncharacterized conser 98.4 0.00044 9.6E-09 53.8 20.9 137 211-356 181-317 (366)
218 KOG3616 Selective LIM binding 98.4 0.0013 2.8E-08 58.9 26.4 34 291-324 995-1028(1636)
219 PF13424 TPR_12: Tetratricopep 98.4 1.4E-06 3E-11 56.2 6.0 64 291-354 5-75 (78)
220 PF02259 FAT: FAT domain; Int 98.4 0.00098 2.1E-08 57.1 25.2 149 203-357 142-341 (352)
221 PF06552 TOM20_plant: Plant sp 98.3 2.5E-05 5.4E-10 57.1 12.1 85 36-121 7-113 (186)
222 PF13431 TPR_17: Tetratricopep 98.3 7.1E-07 1.5E-11 46.5 2.9 34 8-41 1-34 (34)
223 KOG4234 TPR repeat-containing 98.3 2E-05 4.3E-10 58.4 11.3 96 1-96 110-211 (271)
224 PF13431 TPR_17: Tetratricopep 98.3 6.1E-07 1.3E-11 46.8 2.6 33 313-345 1-33 (34)
225 KOG2610 Uncharacterized conser 98.3 5.2E-05 1.1E-09 60.9 13.9 152 2-157 119-275 (491)
226 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 5.6E-06 1.2E-10 69.8 9.1 67 50-116 71-141 (453)
227 KOG3616 Selective LIM binding 98.3 0.00088 1.9E-08 59.9 22.3 293 21-356 662-1026(1636)
228 KOG2796 Uncharacterized conser 98.3 0.00032 7E-09 54.6 17.4 147 57-217 181-333 (366)
229 KOG1586 Protein required for f 98.3 0.001 2.2E-08 51.0 19.7 187 30-242 24-230 (288)
230 KOG4648 Uncharacterized conser 98.3 2.2E-06 4.8E-11 68.7 5.9 228 57-327 101-337 (536)
231 PF04184 ST7: ST7 protein; In 98.2 0.0002 4.3E-09 61.0 17.2 117 87-211 259-384 (539)
232 KOG2300 Uncharacterized conser 98.2 0.0026 5.5E-08 54.1 30.7 347 1-364 62-526 (629)
233 KOG1585 Protein required for f 98.1 0.0019 4.2E-08 49.8 20.0 65 204-275 187-251 (308)
234 KOG1586 Protein required for f 98.1 0.0019 4.2E-08 49.4 22.4 172 24-208 38-230 (288)
235 KOG1585 Protein required for f 98.1 0.0011 2.4E-08 51.1 17.5 125 218-348 121-250 (308)
236 KOG1464 COP9 signalosome, subu 98.1 0.0023 5.1E-08 50.2 18.6 124 32-161 39-177 (440)
237 KOG4648 Uncharacterized conser 98.0 5.3E-05 1.1E-09 61.1 9.6 108 23-135 100-208 (536)
238 COG3118 Thioredoxin domain-con 98.0 0.00064 1.4E-08 54.1 15.2 113 2-116 150-265 (304)
239 PF13281 DUF4071: Domain of un 98.0 0.0064 1.4E-07 51.1 22.9 181 53-240 141-338 (374)
240 COG5191 Uncharacterized conser 98.0 1.4E-05 3.1E-10 63.2 5.8 91 9-99 96-188 (435)
241 KOG4642 Chaperone-dependent E3 98.0 0.00019 4.2E-09 54.9 11.0 90 27-116 17-107 (284)
242 KOG2471 TPR repeat-containing 98.0 0.0089 1.9E-07 51.1 21.8 276 60-356 213-650 (696)
243 KOG4642 Chaperone-dependent E3 98.0 0.00016 3.4E-09 55.4 10.4 83 65-155 22-104 (284)
244 KOG2300 Uncharacterized conser 97.9 0.011 2.4E-07 50.5 33.0 134 218-355 334-475 (629)
245 PF04184 ST7: ST7 protein; In 97.9 0.0023 5E-08 54.8 17.4 145 60-233 175-321 (539)
246 PF08311 Mad3_BUB1_I: Mad3/BUB 97.9 0.00067 1.4E-08 47.9 12.1 117 191-318 3-126 (126)
247 COG3118 Thioredoxin domain-con 97.9 0.003 6.5E-08 50.4 16.5 134 89-240 136-269 (304)
248 PF10300 DUF3808: Protein of u 97.9 0.0005 1.1E-08 60.6 13.7 115 2-116 249-376 (468)
249 PF07719 TPR_2: Tetratricopept 97.9 2.8E-05 6E-10 40.7 3.7 33 292-324 2-34 (34)
250 PF13281 DUF4071: Domain of un 97.8 0.012 2.7E-07 49.5 20.4 178 125-325 140-339 (374)
251 KOG0985 Vesicle coat protein c 97.8 0.031 6.7E-07 52.4 28.2 92 207-310 1279-1373(1666)
252 PF00515 TPR_1: Tetratricopept 97.8 6.6E-05 1.4E-09 39.2 4.6 32 21-52 2-33 (34)
253 PF00515 TPR_1: Tetratricopept 97.8 4E-05 8.7E-10 40.1 3.7 33 292-324 2-34 (34)
254 COG5191 Uncharacterized conser 97.8 5.6E-05 1.2E-09 60.0 5.9 90 43-137 96-187 (435)
255 PF03704 BTAD: Bacterial trans 97.8 0.0014 3E-08 48.1 12.7 90 27-116 13-125 (146)
256 PF07719 TPR_2: Tetratricopept 97.7 9.3E-05 2E-09 38.6 4.6 30 22-51 3-32 (34)
257 KOG0376 Serine-threonine phosp 97.7 6.3E-05 1.4E-09 63.5 5.8 95 2-96 20-115 (476)
258 KOG0890 Protein kinase of the 97.7 0.067 1.5E-06 54.8 26.3 284 21-328 1630-1965(2382)
259 KOG0545 Aryl-hydrocarbon recep 97.7 0.00099 2.1E-08 51.4 11.0 109 208-356 179-295 (329)
260 PF10300 DUF3808: Protein of u 97.7 0.0046 9.9E-08 54.7 16.7 167 141-320 200-376 (468)
261 PF03704 BTAD: Bacterial trans 97.6 0.0039 8.5E-08 45.7 13.0 61 293-353 64-124 (146)
262 KOG1308 Hsp70-interacting prot 97.6 7.5E-05 1.6E-09 60.2 3.9 85 32-116 126-211 (377)
263 PF02259 FAT: FAT domain; Int 97.6 0.041 8.9E-07 47.1 28.5 124 164-303 145-304 (352)
264 KOG0890 Protein kinase of the 97.6 0.13 2.9E-06 52.8 27.8 116 205-332 1668-1796(2382)
265 PF08311 Mad3_BUB1_I: Mad3/BUB 97.6 0.0026 5.6E-08 44.9 11.0 115 225-352 3-126 (126)
266 KOG2610 Uncharacterized conser 97.5 0.034 7.4E-07 45.4 20.5 163 95-279 111-275 (491)
267 KOG1464 COP9 signalosome, subu 97.5 0.016 3.4E-07 45.7 15.6 131 204-339 138-286 (440)
268 COG2976 Uncharacterized protei 97.5 0.022 4.7E-07 42.7 16.4 99 55-162 91-192 (207)
269 KOG0985 Vesicle coat protein c 97.5 0.095 2.1E-06 49.4 26.9 160 141-351 1087-1246(1666)
270 PF10345 Cohesin_load: Cohesin 97.5 0.085 1.8E-06 48.8 34.4 303 3-315 38-428 (608)
271 PF08631 SPO22: Meiosis protei 97.4 0.046 1E-06 44.9 23.8 232 98-352 4-273 (278)
272 COG2976 Uncharacterized protei 97.4 0.0069 1.5E-07 45.2 12.2 111 9-121 75-192 (207)
273 KOG0376 Serine-threonine phosp 97.4 0.00038 8.3E-09 58.9 6.1 105 27-136 11-116 (476)
274 PF04910 Tcf25: Transcriptiona 97.4 0.019 4.1E-07 48.8 15.8 146 12-161 32-225 (360)
275 KOG2041 WD40 repeat protein [G 97.3 0.11 2.4E-06 46.8 21.3 124 197-348 842-967 (1189)
276 KOG0545 Aryl-hydrocarbon recep 97.3 0.011 2.4E-07 45.8 12.5 100 55-162 180-297 (329)
277 PF04910 Tcf25: Transcriptiona 97.3 0.036 7.7E-07 47.2 16.7 150 79-240 32-226 (360)
278 PF13181 TPR_8: Tetratricopept 97.3 0.00056 1.2E-08 35.6 3.9 30 55-84 3-32 (34)
279 PF13181 TPR_8: Tetratricopept 97.3 0.00073 1.6E-08 35.1 4.3 31 21-51 2-32 (34)
280 PF14561 TPR_20: Tetratricopep 97.2 0.0083 1.8E-07 39.4 9.6 65 6-70 8-75 (90)
281 PF10345 Cohesin_load: Cohesin 97.2 0.19 4E-06 46.6 31.5 301 36-350 37-429 (608)
282 PF08631 SPO22: Meiosis protei 97.2 0.1 2.3E-06 42.9 25.8 122 31-160 4-152 (278)
283 smart00386 HAT HAT (Half-A-TPR 97.1 0.00075 1.6E-08 34.7 3.4 32 305-336 1-32 (33)
284 PF02184 HAT: HAT (Half-A-TPR) 97.1 0.00093 2E-08 33.4 3.3 27 2-29 3-29 (32)
285 PF02184 HAT: HAT (Half-A-TPR) 97.1 0.0014 3E-08 32.8 3.7 28 36-63 3-30 (32)
286 PF13174 TPR_6: Tetratricopept 97.0 0.0016 3.4E-08 33.5 4.0 33 208-240 1-33 (33)
287 PF13174 TPR_6: Tetratricopept 97.0 0.003 6.4E-08 32.4 4.7 26 59-84 6-31 (33)
288 COG1747 Uncharacterized N-term 96.9 0.25 5.4E-06 43.1 21.6 207 17-238 63-290 (711)
289 PF13176 TPR_7: Tetratricopept 96.9 0.0025 5.3E-08 33.6 4.0 25 23-47 2-26 (36)
290 KOG1308 Hsp70-interacting prot 96.8 0.0014 3E-08 53.2 3.8 81 3-83 131-212 (377)
291 smart00386 HAT HAT (Half-A-TPR 96.8 0.0033 7.2E-08 32.2 4.2 30 68-97 2-31 (33)
292 KOG0551 Hsp90 co-chaperone CNS 96.8 0.014 3E-07 47.5 9.3 97 20-116 81-182 (390)
293 KOG3824 Huntingtin interacting 96.8 0.0061 1.3E-07 48.8 7.0 56 65-121 128-183 (472)
294 smart00777 Mad3_BUB1_I Mad3/BU 96.7 0.062 1.3E-06 37.6 11.0 115 148-276 4-124 (125)
295 KOG2422 Uncharacterized conser 96.7 0.29 6.3E-06 43.2 16.9 151 2-161 254-451 (665)
296 KOG2041 WD40 repeat protein [G 96.7 0.46 1E-05 43.1 24.2 128 13-156 686-823 (1189)
297 KOG4507 Uncharacterized conser 96.7 0.017 3.7E-07 50.6 9.3 92 29-121 616-709 (886)
298 COG4976 Predicted methyltransf 96.7 0.0022 4.9E-08 48.9 3.7 59 301-359 5-63 (287)
299 KOG0551 Hsp90 co-chaperone CNS 96.7 0.0095 2E-07 48.3 7.3 97 253-354 84-182 (390)
300 PF13176 TPR_7: Tetratricopept 96.7 0.0053 1.1E-07 32.3 4.2 23 56-78 2-24 (36)
301 KOG0530 Protein farnesyltransf 96.7 0.23 5E-06 39.3 18.7 226 3-240 60-302 (318)
302 PRK10941 hypothetical protein; 96.6 0.0088 1.9E-07 48.3 7.2 69 292-361 182-250 (269)
303 KOG3824 Huntingtin interacting 96.6 0.0075 1.6E-07 48.4 6.4 72 24-95 120-192 (472)
304 KOG0530 Protein farnesyltransf 96.6 0.25 5.5E-06 39.1 19.7 193 29-234 52-251 (318)
305 smart00777 Mad3_BUB1_I Mad3/BU 96.5 0.16 3.6E-06 35.5 11.8 111 226-350 4-124 (125)
306 PF10602 RPN7: 26S proteasome 96.5 0.069 1.5E-06 40.4 10.8 106 208-321 37-143 (177)
307 PF10602 RPN7: 26S proteasome 96.4 0.087 1.9E-06 39.8 10.7 103 54-160 37-144 (177)
308 KOG1550 Extracellular protein 96.3 0.81 1.8E-05 41.9 26.4 255 67-356 263-540 (552)
309 PF14853 Fis1_TPR_C: Fis1 C-te 96.3 0.022 4.9E-07 32.9 5.5 42 294-335 4-45 (53)
310 PF09613 HrpB1_HrpK: Bacterial 96.2 0.13 2.9E-06 37.5 10.3 79 54-137 11-89 (160)
311 COG4976 Predicted methyltransf 96.2 0.0084 1.8E-07 46.0 4.3 57 30-86 5-62 (287)
312 PF14561 TPR_20: Tetratricopep 96.2 0.068 1.5E-06 35.1 8.0 47 73-120 8-54 (90)
313 PF04781 DUF627: Protein of un 96.1 0.21 4.6E-06 33.8 10.1 91 26-116 2-107 (111)
314 PF07079 DUF1347: Protein of u 96.1 0.81 1.8E-05 39.4 34.0 59 291-350 460-520 (549)
315 smart00028 TPR Tetratricopepti 96.1 0.013 2.7E-07 29.5 3.7 30 22-51 3-32 (34)
316 COG2909 MalT ATP-dependent tra 96.1 1.3 2.8E-05 41.6 29.2 302 20-350 347-684 (894)
317 smart00028 TPR Tetratricopepti 96.1 0.0081 1.8E-07 30.3 2.9 29 294-322 4-32 (34)
318 KOG1538 Uncharacterized conser 96.0 1.1 2.3E-05 40.5 17.7 59 54-113 586-658 (1081)
319 PF04781 DUF627: Protein of un 95.9 0.3 6.4E-06 33.2 10.2 91 60-158 3-107 (111)
320 PF09986 DUF2225: Uncharacteri 95.9 0.54 1.2E-05 36.8 13.2 99 141-240 89-198 (214)
321 PRK10941 hypothetical protein; 95.9 0.17 3.7E-06 41.0 10.7 64 57-121 185-248 (269)
322 PF13041 PPR_2: PPR repeat fam 95.9 0.061 1.3E-06 30.7 6.1 31 86-116 2-32 (50)
323 PF13041 PPR_2: PPR repeat fam 95.7 0.073 1.6E-06 30.4 6.0 41 20-60 3-45 (50)
324 PF09986 DUF2225: Uncharacteri 95.7 0.1 2.2E-06 40.8 8.5 96 263-359 89-199 (214)
325 PF09613 HrpB1_HrpK: Bacterial 95.5 0.49 1.1E-05 34.7 10.8 83 21-103 11-94 (160)
326 COG0790 FOG: TPR repeat, SEL1 95.4 1.3 2.8E-05 36.8 17.7 186 141-356 53-268 (292)
327 PF11207 DUF2989: Protein of u 95.3 0.45 9.8E-06 36.3 10.3 82 63-149 116-198 (203)
328 KOG1550 Extracellular protein 95.2 2.5 5.5E-05 38.7 22.4 253 1-281 264-539 (552)
329 PF14853 Fis1_TPR_C: Fis1 C-te 95.0 0.3 6.4E-06 28.3 6.8 29 60-88 8-36 (53)
330 KOG3364 Membrane protein invol 95.0 0.62 1.3E-05 32.8 9.4 80 86-171 31-113 (149)
331 PF04053 Coatomer_WDAD: Coatom 95.0 2 4.3E-05 38.0 14.9 19 23-41 298-316 (443)
332 KOG1538 Uncharacterized conser 94.9 2.9 6.3E-05 38.0 20.7 54 214-280 780-833 (1081)
333 PF11207 DUF2989: Protein of u 94.8 1 2.2E-05 34.5 11.1 71 35-107 121-198 (203)
334 COG4941 Predicted RNA polymera 94.8 1.7 3.6E-05 36.0 12.7 158 188-356 211-396 (415)
335 PRK15180 Vi polysaccharide bio 94.7 1.2 2.5E-05 38.8 12.3 123 32-162 301-424 (831)
336 PF12854 PPR_1: PPR repeat 94.6 0.084 1.8E-06 27.3 3.6 18 24-41 11-28 (34)
337 PF12854 PPR_1: PPR repeat 94.5 0.086 1.9E-06 27.2 3.5 27 86-112 6-32 (34)
338 PF12968 DUF3856: Domain of Un 94.4 1.1 2.3E-05 30.9 10.9 89 65-157 21-128 (144)
339 KOG2422 Uncharacterized conser 94.4 3.5 7.7E-05 36.9 17.9 161 66-239 251-451 (665)
340 COG3629 DnrI DNA-binding trans 94.4 0.35 7.6E-06 39.2 8.3 62 55-116 155-216 (280)
341 TIGR02561 HrpB1_HrpK type III 94.3 0.96 2.1E-05 32.6 9.4 64 56-120 13-76 (153)
342 COG3629 DnrI DNA-binding trans 94.2 0.49 1.1E-05 38.4 8.8 62 292-353 154-215 (280)
343 KOG3783 Uncharacterized conser 94.2 3.9 8.4E-05 36.3 20.5 249 6-281 253-521 (546)
344 COG2909 MalT ATP-dependent tra 94.1 5.4 0.00012 37.8 26.3 250 54-317 416-685 (894)
345 PF13374 TPR_10: Tetratricopep 93.8 0.18 3.9E-06 27.2 4.3 27 22-48 4-30 (42)
346 PF13374 TPR_10: Tetratricopep 93.8 0.19 4.2E-06 27.1 4.3 29 88-116 3-31 (42)
347 COG3947 Response regulator con 93.5 0.32 7E-06 39.1 6.4 59 294-352 282-340 (361)
348 COG3914 Spy Predicted O-linked 93.2 3.5 7.5E-05 37.0 12.6 113 8-121 53-175 (620)
349 PF12862 Apc5: Anaphase-promot 93.2 0.76 1.6E-05 30.5 7.1 53 64-116 9-70 (94)
350 KOG3807 Predicted membrane pro 93.0 4.5 9.8E-05 33.5 15.0 104 64-173 195-319 (556)
351 KOG1310 WD40 repeat protein [G 93.0 0.66 1.4E-05 40.7 8.0 86 34-120 388-477 (758)
352 KOG4814 Uncharacterized conser 93.0 0.84 1.8E-05 41.1 8.7 100 252-354 357-457 (872)
353 KOG4814 Uncharacterized conser 93.0 1.6 3.4E-05 39.5 10.3 95 21-116 356-457 (872)
354 PF07721 TPR_4: Tetratricopept 92.9 0.19 4.2E-06 24.0 2.9 23 22-44 3-25 (26)
355 KOG3364 Membrane protein invol 92.8 2.5 5.5E-05 29.9 10.5 69 21-89 33-107 (149)
356 PF04053 Coatomer_WDAD: Coatom 92.5 7.3 0.00016 34.5 16.1 55 166-236 348-402 (443)
357 PF10516 SHNi-TPR: SHNi-TPR; 92.3 0.38 8.2E-06 25.5 3.7 29 21-49 2-30 (38)
358 KOG1839 Uncharacterized protei 92.3 2.8 6E-05 41.3 11.8 146 5-154 957-1124(1236)
359 PRK15180 Vi polysaccharide bio 92.2 1.1 2.3E-05 39.0 8.2 116 5-121 308-424 (831)
360 PF09205 DUF1955: Domain of un 92.2 1.5 3.2E-05 31.0 7.3 59 297-355 92-150 (161)
361 PF12968 DUF3856: Domain of Un 92.0 2.9 6.3E-05 28.9 10.7 69 209-280 9-84 (144)
362 PF12862 Apc5: Anaphase-promot 92.0 0.64 1.4E-05 30.9 5.6 61 97-161 8-73 (94)
363 COG3914 Spy Predicted O-linked 91.8 4 8.7E-05 36.6 11.3 133 192-334 50-185 (620)
364 PF07720 TPR_3: Tetratricopept 91.7 0.87 1.9E-05 23.8 4.6 21 22-42 3-23 (36)
365 PF07720 TPR_3: Tetratricopept 91.5 1 2.2E-05 23.6 4.8 30 55-84 3-34 (36)
366 COG3947 Response regulator con 91.5 1.1 2.5E-05 36.2 7.1 59 58-116 284-342 (361)
367 smart00299 CLH Clathrin heavy 91.3 3.6 7.8E-05 29.6 9.4 29 5-33 26-54 (140)
368 KOG1310 WD40 repeat protein [G 91.1 1.1 2.3E-05 39.5 7.1 85 3-87 391-479 (758)
369 TIGR02561 HrpB1_HrpK type III 91.1 4.6 9.9E-05 29.3 9.7 79 23-101 13-92 (153)
370 PF07721 TPR_4: Tetratricopept 91.1 0.4 8.6E-06 22.9 2.8 22 90-111 4-25 (26)
371 PF12921 ATP13: Mitochondrial 90.9 1.3 2.7E-05 31.4 6.3 39 326-364 53-91 (126)
372 PF01535 PPR: PPR repeat; Int 90.8 0.43 9.3E-06 23.5 3.0 26 328-353 3-28 (31)
373 PF01535 PPR: PPR repeat; Int 90.5 0.54 1.2E-05 23.2 3.2 13 64-76 11-23 (31)
374 KOG0686 COP9 signalosome, subu 90.0 4.8 0.0001 34.4 9.7 92 21-114 151-256 (466)
375 PF10516 SHNi-TPR: SHNi-TPR; 89.6 0.64 1.4E-05 24.7 3.0 28 293-320 3-30 (38)
376 COG4649 Uncharacterized protei 89.3 7.6 0.00016 29.1 12.8 119 31-157 69-195 (221)
377 COG0790 FOG: TPR repeat, SEL1 89.2 12 0.00025 31.1 19.0 168 32-221 53-236 (292)
378 PF07079 DUF1347: Protein of u 89.0 15 0.00032 32.2 27.7 129 26-158 12-157 (549)
379 TIGR03504 FimV_Cterm FimV C-te 88.8 0.88 1.9E-05 25.1 3.3 23 330-352 4-26 (44)
380 PF10579 Rapsyn_N: Rapsyn N-te 88.8 4.1 9E-05 25.8 6.6 48 99-151 18-65 (80)
381 COG2912 Uncharacterized conser 88.5 5.1 0.00011 32.4 8.6 61 60-121 188-248 (269)
382 COG2912 Uncharacterized conser 88.0 6.5 0.00014 31.8 8.9 61 29-89 190-251 (269)
383 PF04190 DUF410: Protein of un 87.9 13 0.00029 30.2 20.2 116 89-236 51-170 (260)
384 KOG2114 Vacuolar assembly/sort 87.9 25 0.00055 33.4 17.0 83 20-107 368-451 (933)
385 COG4455 ImpE Protein of avirul 87.9 7.1 0.00015 30.4 8.6 73 63-137 11-83 (273)
386 COG1747 Uncharacterized N-term 87.9 19 0.00042 32.1 21.1 169 144-337 81-251 (711)
387 PF15015 NYD-SP12_N: Spermatog 87.5 12 0.00027 32.3 10.5 88 27-114 183-289 (569)
388 TIGR00756 PPR pentatricopeptid 87.2 1.5 3.2E-05 22.1 3.7 25 23-47 3-27 (35)
389 TIGR00756 PPR pentatricopeptid 87.1 1.6 3.4E-05 22.0 3.7 26 56-81 3-28 (35)
390 PF10373 EST1_DNA_bind: Est1 D 86.7 4.2 9.1E-05 33.4 7.8 60 5-64 1-61 (278)
391 PF11846 DUF3366: Domain of un 86.6 2.9 6.3E-05 32.2 6.4 49 70-120 128-176 (193)
392 PF11817 Foie-gras_1: Foie gra 86.6 8.5 0.00018 31.1 9.2 79 35-113 153-244 (247)
393 COG4455 ImpE Protein of avirul 86.5 14 0.0003 29.0 11.0 62 2-63 17-82 (273)
394 TIGR03504 FimV_Cterm FimV C-te 86.5 2 4.3E-05 23.7 3.8 26 211-236 3-28 (44)
395 PRK13184 pknD serine/threonine 86.4 36 0.00077 33.6 26.2 92 28-121 483-585 (932)
396 KOG1839 Uncharacterized protei 85.7 6.3 0.00014 39.0 9.0 129 27-158 939-1086(1236)
397 PF11846 DUF3366: Domain of un 85.6 3.9 8.6E-05 31.5 6.7 50 36-85 127-176 (193)
398 PF13812 PPR_3: Pentatricopept 85.2 3 6.5E-05 20.9 4.1 25 56-80 4-28 (34)
399 TIGR02996 rpt_mate_G_obs repea 85.2 3.1 6.8E-05 22.5 4.0 29 76-104 5-33 (42)
400 KOG0686 COP9 signalosome, subu 84.7 7.4 0.00016 33.4 7.9 103 208-317 151-255 (466)
401 PF13812 PPR_3: Pentatricopept 84.3 3.3 7.1E-05 20.7 4.0 29 21-49 2-30 (34)
402 KOG3807 Predicted membrane pro 84.0 24 0.00052 29.6 17.6 118 92-240 189-308 (556)
403 KOG3783 Uncharacterized conser 84.0 32 0.00069 30.9 25.1 252 70-355 250-521 (546)
404 PF09670 Cas_Cas02710: CRISPR- 83.9 28 0.00061 30.3 13.2 59 216-280 140-198 (379)
405 KOG0687 26S proteasome regulat 83.9 24 0.00052 29.5 12.8 105 53-162 104-214 (393)
406 PF10579 Rapsyn_N: Rapsyn N-te 83.8 8.8 0.00019 24.4 6.5 47 65-111 18-67 (80)
407 PF15297 CKAP2_C: Cytoskeleton 82.7 11 0.00023 31.8 8.0 67 32-98 114-186 (353)
408 PF15015 NYD-SP12_N: Spermatog 82.6 21 0.00046 31.0 9.7 94 53-154 172-287 (569)
409 TIGR02996 rpt_mate_G_obs repea 82.5 5.1 0.00011 21.7 4.1 29 9-37 5-33 (42)
410 KOG0276 Vesicle coat complex C 82.3 13 0.00027 33.9 8.7 78 23-115 617-694 (794)
411 PF11817 Foie-gras_1: Foie gra 82.3 14 0.00031 29.8 8.7 88 223-314 154-241 (247)
412 KOG0529 Protein geranylgeranyl 80.5 38 0.00082 29.4 15.4 179 32-217 40-239 (421)
413 PF10373 EST1_DNA_bind: Est1 D 80.3 31 0.00067 28.3 14.5 61 72-137 1-61 (278)
414 KOG1811 Predicted Zn2+-binding 80.3 7 0.00015 35.3 6.6 40 324-363 586-625 (1141)
415 cd02680 MIT_calpain7_2 MIT: do 79.6 5.1 0.00011 25.2 4.1 17 100-116 19-35 (75)
416 PRK11619 lytic murein transgly 79.4 57 0.0012 30.8 29.8 90 21-116 65-158 (644)
417 PHA02537 M terminase endonucle 79.1 28 0.0006 27.7 8.9 102 216-323 92-210 (230)
418 PRK15338 type III secretion sy 78.9 27 0.00058 29.9 9.2 138 192-340 108-252 (372)
419 KOG2066 Vacuolar assembly/sort 78.6 62 0.0013 30.7 23.5 29 126-157 505-533 (846)
420 PF14863 Alkyl_sulf_dimr: Alky 78.0 24 0.00051 25.6 8.4 60 43-102 60-119 (141)
421 PF10255 Paf67: RNA polymerase 77.9 48 0.001 29.0 11.0 132 23-156 125-268 (404)
422 cd02680 MIT_calpain7_2 MIT: do 77.7 3.6 7.8E-05 25.9 3.1 17 304-320 19-35 (75)
423 PF04190 DUF410: Protein of un 77.3 38 0.00083 27.6 17.0 67 205-280 88-170 (260)
424 PF15297 CKAP2_C: Cytoskeleton 77.1 22 0.00047 30.0 8.1 52 68-120 118-172 (353)
425 PF14929 TAF1_subA: TAF RNA Po 76.0 65 0.0014 29.6 16.2 131 14-156 286-439 (547)
426 KOG1463 26S proteasome regulat 75.5 49 0.0011 28.0 22.9 274 26-322 10-318 (411)
427 COG4941 Predicted RNA polymera 75.1 50 0.0011 27.9 13.3 119 2-121 272-398 (415)
428 PF14929 TAF1_subA: TAF RNA Po 74.4 71 0.0015 29.4 14.8 155 103-280 274-441 (547)
429 PF00244 14-3-3: 14-3-3 protei 74.3 44 0.00095 26.8 16.8 51 224-280 143-198 (236)
430 PRK13184 pknD serine/threonine 74.2 97 0.0021 30.8 27.8 90 1-91 490-590 (932)
431 COG4649 Uncharacterized protei 74.2 35 0.00077 25.7 16.5 133 191-336 76-211 (221)
432 PRK15490 Vi polysaccharide bio 73.7 39 0.00084 31.1 9.5 78 32-111 20-98 (578)
433 COG5187 RPN7 26S proteasome re 72.9 52 0.0011 27.1 14.9 142 16-162 69-225 (412)
434 PF00244 14-3-3: 14-3-3 protei 72.7 48 0.001 26.6 16.4 48 189-236 142-198 (236)
435 TIGR02710 CRISPR-associated pr 72.4 65 0.0014 28.0 12.5 59 215-276 138-196 (380)
436 KOG2908 26S proteasome regulat 70.7 65 0.0014 27.3 15.6 82 97-182 85-174 (380)
437 KOG0276 Vesicle coat complex C 70.6 40 0.00087 30.9 8.6 111 208-350 615-746 (794)
438 KOG4521 Nuclear pore complex, 70.4 1.3E+02 0.0027 30.5 17.5 195 22-236 922-1132(1480)
439 KOG4279 Serine/threonine prote 70.2 62 0.0013 30.7 9.9 182 123-323 198-398 (1226)
440 PF04212 MIT: MIT (microtubule 70.2 7.1 0.00015 24.0 3.1 17 263-279 17-33 (69)
441 PF00637 Clathrin: Region in C 68.7 0.71 1.5E-05 33.5 -1.9 40 5-44 26-66 (143)
442 PRK15338 type III secretion sy 68.4 77 0.0017 27.3 12.0 110 6-116 109-229 (372)
443 PF10037 MRP-S27: Mitochondria 67.5 90 0.002 27.7 11.3 90 25-116 71-167 (429)
444 PF12753 Nro1: Nuclear pore co 67.4 29 0.00064 29.9 6.9 31 70-102 335-365 (404)
445 KOG0529 Protein geranylgeranyl 67.2 86 0.0019 27.3 14.0 157 4-165 47-231 (421)
446 PF14863 Alkyl_sulf_dimr: Alky 66.8 37 0.00079 24.6 6.5 44 298-341 77-120 (141)
447 PRK15490 Vi polysaccharide bio 66.7 52 0.0011 30.3 8.7 80 65-154 20-99 (578)
448 cd00923 Cyt_c_Oxidase_Va Cytoc 65.1 38 0.00082 22.6 5.6 57 269-330 25-81 (103)
449 cd00280 TRFH Telomeric Repeat 65.0 60 0.0013 24.8 8.6 63 36-99 85-156 (200)
450 KOG0292 Vesicle coat complex C 65.0 35 0.00076 32.8 7.4 29 53-81 672-700 (1202)
451 PF04348 LppC: LppC putative l 64.8 2.1 4.6E-05 38.9 0.0 165 55-242 26-200 (536)
452 cd02684 MIT_2 MIT: domain cont 64.7 18 0.0004 22.8 4.2 17 100-116 19-35 (75)
453 KOG1463 26S proteasome regulat 64.6 89 0.0019 26.6 16.9 216 94-320 11-238 (411)
454 PF12753 Nro1: Nuclear pore co 63.7 7.7 0.00017 33.2 3.0 47 307-355 334-392 (404)
455 PF12921 ATP13: Mitochondrial 63.7 50 0.0011 23.4 8.4 52 287-338 48-101 (126)
456 cd02682 MIT_AAA_Arch MIT: doma 63.0 30 0.00066 21.8 4.8 13 72-84 32-44 (75)
457 cd02681 MIT_calpain7_1 MIT: do 62.5 20 0.00043 22.7 4.0 18 99-116 18-35 (76)
458 COG5159 RPN6 26S proteasome re 62.5 89 0.0019 25.8 18.9 59 91-152 7-68 (421)
459 KOG2114 Vacuolar assembly/sort 61.7 1.6E+02 0.0035 28.5 18.4 90 124-231 366-455 (933)
460 PF02064 MAS20: MAS20 protein 61.0 36 0.00079 23.9 5.4 28 58-85 68-95 (121)
461 PF10037 MRP-S27: Mitochondria 60.6 1E+02 0.0022 27.4 9.2 60 23-82 106-167 (429)
462 cd02679 MIT_spastin MIT: domai 60.4 13 0.00028 23.7 2.9 14 267-280 5-18 (79)
463 KOG4279 Serine/threonine prote 59.7 39 0.00084 31.9 6.7 128 33-161 256-398 (1226)
464 PF09205 DUF1955: Domain of un 59.3 64 0.0014 23.2 13.0 57 60-116 93-149 (161)
465 PHA02537 M terminase endonucle 58.8 92 0.002 24.9 9.2 98 64-162 94-211 (230)
466 PF02284 COX5A: Cytochrome c o 56.9 55 0.0012 22.2 5.4 42 289-330 43-84 (108)
467 KOG4014 Uncharacterized conser 56.9 87 0.0019 24.0 13.9 14 144-157 88-101 (248)
468 PF10952 DUF2753: Protein of u 56.5 45 0.00098 23.4 5.1 57 296-352 6-77 (140)
469 KOG1920 IkappaB kinase complex 56.5 2.3E+02 0.0051 28.8 14.1 24 92-115 957-980 (1265)
470 cd00280 TRFH Telomeric Repeat 55.6 92 0.002 23.8 10.3 41 297-338 117-157 (200)
471 PRK12798 chemotaxis protein; R 54.6 1.5E+02 0.0033 26.1 21.7 29 208-236 258-286 (421)
472 KOG1811 Predicted Zn2+-binding 54.4 1.8E+02 0.004 27.0 12.6 70 85-161 585-656 (1141)
473 KOG1920 IkappaB kinase complex 54.1 2.6E+02 0.0055 28.5 19.0 25 295-319 1003-1027(1265)
474 cd02678 MIT_VPS4 MIT: domain c 53.7 35 0.00075 21.4 4.1 17 100-116 19-35 (75)
475 KOG2581 26S proteasome regulat 53.7 1.6E+02 0.0034 25.9 19.1 128 29-162 135-280 (493)
476 KOG2063 Vacuolar assembly/sort 53.0 2.4E+02 0.0052 27.9 18.0 27 90-116 507-533 (877)
477 KOG2066 Vacuolar assembly/sort 52.8 2.2E+02 0.0048 27.4 16.0 21 59-79 511-531 (846)
478 PF04090 RNA_pol_I_TF: RNA pol 52.7 1.1E+02 0.0024 23.8 11.9 117 21-137 42-189 (199)
479 KOG1114 Tripeptidyl peptidase 52.0 2.5E+02 0.0055 27.9 13.8 71 103-180 1212-1282(1304)
480 PF04097 Nic96: Nup93/Nic96; 51.9 2.1E+02 0.0047 27.0 17.8 28 291-318 414-441 (613)
481 PF02064 MAS20: MAS20 protein 51.7 56 0.0012 23.0 5.1 28 92-120 68-95 (121)
482 KOG0889 Histone acetyltransfer 51.4 4.6E+02 0.01 30.7 23.4 47 291-337 2812-2858(3550)
483 PF01239 PPTA: Protein prenylt 51.3 30 0.00065 17.0 3.8 27 311-337 3-29 (31)
484 cd02682 MIT_AAA_Arch MIT: doma 50.3 63 0.0014 20.4 6.6 23 225-247 31-53 (75)
485 KOG1166 Mitotic checkpoint ser 50.3 1.5E+02 0.0034 29.5 9.4 110 237-355 29-144 (974)
486 COG4259 Uncharacterized protei 49.7 78 0.0017 21.3 6.2 34 54-87 73-106 (121)
487 smart00299 CLH Clathrin heavy 49.7 93 0.002 22.2 14.6 122 26-175 13-135 (140)
488 KOG0687 26S proteasome regulat 49.5 1.6E+02 0.0035 24.9 16.4 112 124-240 102-214 (393)
489 PF06957 COPI_C: Coatomer (COP 46.6 1.5E+02 0.0032 26.3 8.0 109 214-324 211-333 (422)
490 KOG2997 F-box protein FBX9 [Ge 45.7 36 0.00077 28.4 3.9 19 304-322 32-50 (366)
491 PF04762 IKI3: IKI3 family; I 45.3 3.3E+02 0.0073 27.4 11.0 14 141-154 913-926 (928)
492 KOG2062 26S proteasome regulat 45.0 2.9E+02 0.0063 26.6 10.8 187 118-332 55-249 (929)
493 PF09670 Cas_Cas02710: CRISPR- 44.9 2.2E+02 0.0047 25.0 14.1 63 131-202 136-198 (379)
494 COG5159 RPN6 26S proteasome re 43.7 1.9E+02 0.0041 24.1 20.6 54 24-77 7-69 (421)
495 PF12583 TPPII_N: Tripeptidyl 42.3 79 0.0017 22.5 4.6 44 292-335 77-120 (139)
496 PF07219 HemY_N: HemY protein 41.6 72 0.0016 21.8 4.5 42 299-340 67-108 (108)
497 COG5187 RPN7 26S proteasome re 40.4 2.2E+02 0.0047 23.8 14.9 109 124-240 113-225 (412)
498 PF05053 Menin: Menin; InterP 39.1 2.3E+02 0.0051 26.1 8.0 123 87-225 277-425 (618)
499 PF11349 DUF3151: Protein of u 39.0 1.4E+02 0.003 21.0 7.6 74 11-84 27-123 (129)
500 cd02677 MIT_SNX15 MIT: domain 38.7 1E+02 0.0022 19.5 6.5 13 3-15 4-16 (75)
No 1
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-48 Score=314.17 Aligned_cols=358 Identities=67% Similarity=1.194 Sum_probs=338.7
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
+..|+.++.+++.+.|....+|+.+..+....|++..|+++|++.++..|+..+|..++++..+.++.+.|+.+|++.+-
T Consensus 123 vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 123 VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 46788888888888888888899998888899999999999999999999999999999999999999999999999999
Q ss_pred hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
.+| +...|+.++.+..+.|+...|+.+|++|++. .+++ .....++..+|.+.. .++.++.|+-+|+-||...|.
T Consensus 203 ~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~-~~~d-~~~e~lfvaFA~fEe---~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 203 VHP-KVSNWIKYARFEEKHGNVALARSVYERAIEF-LGDD-EEAEILFVAFAEFEE---RQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred ecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hhhH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCc
Confidence 999 8999999999999999999999999999999 8876 666888999999999 999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703 162 GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 241 (365)
+....++..+..++.+.|+..++++.++.+.+-.|++.+..+|.|.++|+.+..+....|+.+..++.|++|+...|+..
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ 356 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS 356 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence 88788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc----cCCCcc---------------------------hh
Q 036703 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF----SFSPRM---------------------------EE 290 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~----~~~~~~---------------------------~~ 290 (365)
++..|++|+.+|++|+.+.++...+.+.++.+|+.++++-| +++.+| |.
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK 436 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999844 455566 88
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCccccC
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~~~~ 365 (365)
+.++..|+.++.+.++++.++++|++-++..|.+..+|..++.++..+|+.+.|+.+|+-|+++...|+|+.+||
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-39 Score=270.21 Aligned_cols=326 Identities=18% Similarity=0.186 Sum_probs=264.2
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hH-------------------------
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HE------------------------- 54 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~------------------------- 54 (365)
++++|+.+|+.++++.|+..++|+.+|.++...|+.+.|.+.|..+++++|+ ..
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 3678999999999999999999999999999988888888888888888875 22
Q ss_pred ---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH
Q 036703 55 ---------GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA 125 (365)
Q Consensus 55 ---------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 125 (365)
+|..++.....+|+...|++.|++++.++|.-.++++.+|.+|...+.+++|+.+|.+|+.. .|..
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-rpn~---- 285 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-RPNH---- 285 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-CCcc----
Confidence 34444444445566666666666666666666666666666666666666666666666666 5555
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC
Q 036703 126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM 205 (365)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~ 205 (365)
..++-++|.+|. .+|..+-|++.|+++++..|.- .+.+..++......|+.. +|...|.++|..+|+
T Consensus 286 A~a~gNla~iYy---eqG~ldlAI~~Ykral~~~P~F--~~Ay~NlanALkd~G~V~--------ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 286 AVAHGNLACIYY---EQGLLDLAIDTYKRALELQPNF--PDAYNNLANALKDKGSVT--------EAVDCYNKALRLCPN 352 (966)
T ss_pred hhhccceEEEEe---ccccHHHHHHHHHHHHhcCCCc--hHHHhHHHHHHHhccchH--------HHHHHHHHHHHhCCc
Confidence 666666666666 8888888888888888887774 567777777777777743 688888888888888
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC
Q 036703 206 NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285 (365)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 285 (365)
++++..++|.++...|.++.|..+|.+++...|.-. ....+++.++ .++|++++|+..|+.++++.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a---------aa~nNLa~i~-kqqgnl~~Ai~~YkealrI~---- 418 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA---------AAHNNLASIY-KQQGNLDDAIMCYKEALRIK---- 418 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh---------hhhhhHHHHH-HhcccHHHHHHHHHHHHhcC----
Confidence 888888888888888888888888888888888754 3677888888 59999999999999999998
Q ss_pred Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCcc
Q 036703 286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEF 362 (365)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~ 362 (365)
|. .+.+.++|..+..+|+.+.|...|.+|+..+|...++..+++.++...|++.+|+..|+.++++.| |.|+.
T Consensus 419 ---P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP-DfpdA 492 (966)
T KOG4626|consen 419 ---PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP-DFPDA 492 (966)
T ss_pred ---chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-CCchh
Confidence 55 667899999999999999999999999999999999999999999999999999999999999999 88875
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3e-39 Score=268.42 Aligned_cols=328 Identities=15% Similarity=0.146 Sum_probs=277.5
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
+....--..+++..|.-.+++..+|.++...|+++.|+..|+.++++.|+ .++|..++.++...|+.+.|...|..+++
T Consensus 99 d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 99 DKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred hhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 44455556788999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
++|+...+...+|.+....|+.++|..+|.+|++. .|.- .-+|.++|.++. .+|+...|+..|+++++..|.
T Consensus 179 lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~-qp~f----AiawsnLg~~f~---~~Gei~~aiq~y~eAvkldP~ 250 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET-QPCF----AIAWSNLGCVFN---AQGEIWLAIQHYEEAVKLDPN 250 (966)
T ss_pred cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh-CCce----eeeehhcchHHh---hcchHHHHHHHHHHhhcCCCc
Confidence 99988888888888888889888888888888888 7664 778888888888 888888888888888888777
Q ss_pred chhHHHHHHHHHHHHHcCCchhhhH--------------------------HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 036703 162 GRAEDLYRKFLAFEKQYGDREGIED--------------------------AIAGKMRLQYEDGVRKNPMNYDTWFDYIR 215 (365)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~a~~~~~~~l~~~p~~~~~~~~~~~ 215 (365)
- .+.|..++..+...+.+++.-. -.++.|+..|++++...|+.++++.+++.
T Consensus 251 f--~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 251 F--LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred c--hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 4 5666666666665554443211 12367888888888888988888988988
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHH
Q 036703 216 LEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFK 295 (365)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (365)
.+...|+..+|..+|.+++..+|..++ ...+++..+ ..+|.++.|..+|.+++...|.. ...+.
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~had---------am~NLgni~-~E~~~~e~A~~ly~~al~v~p~~------aaa~n 392 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHAD---------AMNNLGNIY-REQGKIEEATRLYLKALEVFPEF------AAAHN 392 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHH---------HHHHHHHHH-HHhccchHHHHHHHHHHhhChhh------hhhhh
Confidence 888889999999999999988888754 677788887 68889999999999999888332 55668
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 296 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
+++.++.+.|++++|+.+|+.++.+.|+..+.+.++++.+...|+.+.|...|.+|+..+|
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 8899999999999999999999999999999999999999999999999999999998887
No 4
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=4.2e-35 Score=244.96 Aligned_cols=328 Identities=20% Similarity=0.331 Sum_probs=310.0
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
++-|+.+|..+++.+|....+|...+.+....|..+.-..++++++...|. +.+|++++......||...|+.++.+++
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 466899999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
+.+|++.++|+....++....++++|+.+|.++... .|. ..+|+..+.++. .+++.++|+++++++++..|
T Consensus 612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~~-sgT-----eRv~mKs~~~er---~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-SGT-----ERVWMKSANLER---YLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-CCc-----chhhHHHhHHHH---HhhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988 665 899999999999 99999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
.- ..+|+..++++.+.++. +.|+..|...++.+|+++.+|..++.+....|...+|+.+++++.-.+|.+
T Consensus 683 ~f--~Kl~lmlGQi~e~~~~i--------e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 683 DF--HKLWLMLGQIEEQMENI--------EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred ch--HHHHHHHhHHHHHHHHH--------HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 85 78999999999998874 479999999999999999999999999999999999999999999999998
Q ss_pred hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc------------------------hhHHHHHH
Q 036703 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM------------------------EERRIFKK 296 (365)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~ 296 (365)
.. +|+...+++ .+.|..+.|.....+|++..|+.+.+| .++.+...
T Consensus 753 ~~---------lwle~Ir~E-lR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVlla 822 (913)
T KOG0495|consen 753 AL---------LWLESIRME-LRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLA 822 (913)
T ss_pred ch---------hHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHH
Confidence 53 999999995 899999999999999999999999999 34778888
Q ss_pred HHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 297 YIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 297 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
.+.+.+...++++|++.|+++++.+|++.++|..+..++..+|..+.-.++|.++..-.|..
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999888853
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.4e-34 Score=231.31 Aligned_cols=333 Identities=24% Similarity=0.470 Sum_probs=295.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
|+..|+++|++.+...|+ ..+|..+..+.++...++.|+.+|++-+-.+|+...|+.++.+..++|+...|+.+|++|+
T Consensus 156 Ni~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred ccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC------------------------------------
Q 036703 81 QCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD------------------------------------ 121 (365)
Q Consensus 81 ~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------------------ 121 (365)
..-.++ ..++...|.+...++.+++|+-+|+-|+.. .|.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 976654 567888999999999999999999999998 7765
Q ss_pred ----hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHH
Q 036703 122 ----HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYE 197 (365)
Q Consensus 122 ----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 197 (365)
++.+...|..+..+.. ..|+.++.+++|++||...|.......|..|+.+.....-+.+++....+.++.+|+
T Consensus 314 ~v~~np~nYDsWfdylrL~e---~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEE---SVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHhCCCCchHHHHHHHHHH---hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2223467888888888 899999999999999999998766778888888887777777766666779999999
Q ss_pred HHHHcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHH
Q 036703 198 DGVRKNPMN----YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDV 273 (365)
Q Consensus 198 ~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (365)
.++.+-|.. ..+|+.++.+..++.+...|++++..++..+|.+. +...|+.+. .+.++++.++.+
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K----------lFk~YIelE-lqL~efDRcRkL 459 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK----------LFKGYIELE-LQLREFDRCRKL 459 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh----------HHHHHHHHH-HHHhhHHHHHHH
Confidence 999999975 57999999999999999999999999999999974 556666664 789999999999
Q ss_pred HHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch--HHHHHHHHHHHhhccchhHHHHHHHH
Q 036703 274 YRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN--CYAWSKYTELEKSLDETERARAIFEL 350 (365)
Q Consensus 274 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~ 350 (365)
|++-+... |. ...|..+|.++..+|+.+.|+.+|+-|++...-+ ..+|-.|+.++...|.+++|+.+|++
T Consensus 460 YEkfle~~-------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 460 YEKFLEFS-------PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHhcC-------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 99999988 44 7788999999999999999999999998764222 35899999999999999999999999
Q ss_pred HhcCcC
Q 036703 351 AIAQPI 356 (365)
Q Consensus 351 a~~~~~ 356 (365)
.++..+
T Consensus 533 lL~rt~ 538 (677)
T KOG1915|consen 533 LLDRTQ 538 (677)
T ss_pred HHHhcc
Confidence 998776
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.8e-33 Score=254.82 Aligned_cols=327 Identities=14% Similarity=0.116 Sum_probs=269.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHH---
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIF--- 76 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~--- 76 (365)
+|++|+..|++++...|+ +..|..+|.++...|++++|+..+.++++.+|+ ..+|..++.++...|++++|+..|
T Consensus 142 ~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 478888899999988886 678888888898889999999999999988888 678888887777777766665433
Q ss_pred --------------------------------------------------------------------------------
Q 036703 77 -------------------------------------------------------------------------------- 76 (365)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (365)
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence
Q ss_pred -----------------HHHHHh---CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703 77 -----------------ERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE 136 (365)
Q Consensus 77 -----------------~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
++++.. .|....++..+|.++...|++++|+..|+++++. .|.. ...|..+|.++
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-~P~~----~~~~~~la~~~ 375 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-DPRV----TQSYIKRASMN 375 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc----HHHHHHHHHHH
Confidence 333322 2445566777888888889999999999999988 8877 88889999999
Q ss_pred HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 036703 137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRL 216 (365)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~ 216 (365)
. ..|++++|+..|+++++..|.+ ..++...+.++...|+.+ .|+..|++++..+|++..++..+|.+
T Consensus 376 ~---~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~--------~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 376 L---ELGDPDKAEEDFDKALKLNSED--PDIYYHRAQLHFIKGEFA--------QAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred H---HCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 8 8999999999999999988876 578888888888888865 69999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHH-HHH
Q 036703 217 EERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERR-IFK 295 (365)
Q Consensus 217 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~-~~~ 295 (365)
+...|++++|+..|++++...|.++. ++..++..+ ...|++++|+..|++++...|.....+.... ++.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~---------~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPD---------VYNYYGELL-LDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 99999999999999999999988754 677788887 6899999999999999999865433322211 222
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 296 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
..+.++...|++++|..++++++..+|++..++..++.++...|++++|+..|+++++..+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 2233334579999999999999999999999999999999999999999999999998876
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.4e-33 Score=250.97 Aligned_cols=326 Identities=10% Similarity=-0.006 Sum_probs=292.8
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
+++.|..+++.++...|+++.++..++......|++++|+..|++++..+|+ ...|..++.++...|++++|+..|+++
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
++.+|+++.++..++.++...|++++|...+.+++.. .|++ +..+...+. +. ..|++++|...++++++..
T Consensus 137 l~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~P~~----~~a~~~~~~-l~---~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 137 WLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-VPPR----GDMIATCLS-FL---NKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCC----HHHHHHHHH-HH---HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 8887 666665544 67 8999999999999999887
Q ss_pred CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHH----HHHHHHHHHh
Q 036703 160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQER----VREVYERAIA 235 (365)
Q Consensus 160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~ 235 (365)
|... .......+..+...|+.+ .|+..|++++..+|++..++..+|.++...|++++ |...|++++.
T Consensus 208 ~~~~-~~~~~~l~~~l~~~g~~~--------eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 208 ALER-QESAGLAVDTLCAVGKYQ--------EAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred CCcc-hhHHHHHHHHHHHCCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 6432 223334455666777755 69999999999999999999999999999999986 8999999999
Q ss_pred cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHH
Q 036703 236 NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLY 314 (365)
Q Consensus 236 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~ 314 (365)
..|++.. ++..++..+ ...|++++|+..+++++... |+ +.++..++.++...|++++|+..|
T Consensus 279 l~P~~~~---------a~~~lg~~l-~~~g~~~eA~~~l~~al~l~-------P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 279 FNSDNVR---------IVTLYADAL-IRTGQNEKAIPLLQQSLATH-------PDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred hCCCCHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999753 788888887 69999999999999999998 54 677888999999999999999999
Q ss_pred HHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703 315 EKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 315 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
++++..+|++...+...+.++...|+.++|...|+++++..|.+.|.
T Consensus 342 ~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 342 VQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred HHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 99999999988877778999999999999999999999999966554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-31 Score=253.20 Aligned_cols=319 Identities=15% Similarity=0.171 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
++|+..|+++++.+|++..++..++.++...|++++|+..|++++...|. ..++..++.++...|++++|...+++++.
T Consensus 482 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 482 AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444 33444444444444444444444444444
Q ss_pred hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
.+|.+...+..++.++...|++++|+..++++++. .|.+ +.+|..++.++. ..|++++|+..|+++++..|.
T Consensus 562 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~ 633 (899)
T TIGR02917 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDS----PEAWLMLGRAQL---AAGDLNKAVSSFKKLLALQPD 633 (899)
T ss_pred hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCC
Confidence 44444444444444444444444444444444444 4443 444555555555 555555555555555544444
Q ss_pred chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703 162 GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 241 (365)
+ ...+..++..+...|+.+ +|...|+++++.+|++..++..++.++...|++++|..+++.+....|.+.
T Consensus 634 ~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 703 (899)
T TIGR02917 634 S--ALALLLLADAYAVMKNYA--------KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAA 703 (899)
T ss_pred C--hHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCh
Confidence 3 234444444444444433 355555555555555555555555555445555555555544444444432
Q ss_pred hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS 321 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 321 (365)
. .+...+..+ ...|++++|+..|++++... |+...+..++.++...|++++|...++++++.+
T Consensus 704 ~---------~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 704 L---------GFELEGDLY-LRQKDYPAAIQAYRKALKRA-------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred H---------HHHHHHHHH-HHCCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 344445554 36667777777777766665 333344445555555555555555555555555
Q ss_pred cchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 322 PENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 322 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
|+++.++..++.++...|+.++|...|+++++..|
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 55555555555555555555555555555555554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-31 Score=253.51 Aligned_cols=319 Identities=18% Similarity=0.159 Sum_probs=196.2
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
+++|...|++++..+|.+...+..++.++...|++++|...+++++...|. ...|..++.++...|++++|+..|++++
T Consensus 549 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 549 EEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777777777777776666 5677777777777777777777777777
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
+.+|+++..+..++.++...|++++|...|+++++. .|.+ ...+..++.++. ..|++++|..+++++....|
T Consensus 629 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 629 ALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDN----TEAQIGLAQLLL---AAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCc
Confidence 777777777777777777777777777777777777 6665 666666666666 66666666666666665555
Q ss_pred CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
.. ...+...+..+...|+++ .|...|++++...|++ ..+..++.++...|++++|...+++++...|++
T Consensus 701 ~~--~~~~~~~~~~~~~~g~~~--------~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 701 KA--ALGFELEGDLYLRQKDYP--------AAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred CC--hHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 43 344455555555555543 4555555555555555 445555555555555555555555555555554
Q ss_pred hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 320 (365)
.. ++..++.++ ...|++++|+..|+++++..| +++.++..++.++...|+ .+|+..+++++..
T Consensus 770 ~~---------~~~~la~~~-~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 770 AV---------LRTALAELY-LAQKDYDKAIKHYRTVVKKAP------DNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HH---------HHHHHHHHH-HHCcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 32 444444444 355555555555555555542 114444555555555555 4555555555555
Q ss_pred CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 321 SPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 321 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
.|+++.++..++.++...|++++|...|+++++..|
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 555555555555555555555555555555555555
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.6e-31 Score=254.46 Aligned_cols=328 Identities=15% Similarity=0.153 Sum_probs=254.2
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h--HHH------------HHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H--EGW------------LSYIKFKLR 65 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~------------~~~~~~~~~ 65 (365)
++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..|+++++.+|+ . ..| ...+..+..
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999997 2 223 233667788
Q ss_pred hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh-------
Q 036703 66 YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM------- 138 (365)
Q Consensus 66 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------- 138 (365)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++. .|.+ ..++..++.++..
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-~p~~----~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-DPGN----TNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8887 5555555444320
Q ss_pred --------------------------------ccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhH
Q 036703 139 --------------------------------GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIED 186 (365)
Q Consensus 139 --------------------------------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (365)
....|++++|+..|+++++..|.+ ..++..++.++...|+.+
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~---- 512 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRS---- 512 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH----
Confidence 004566666666666666666665 345555666666666644
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-------------------------------
Q 036703 187 AIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIA------------------------------- 235 (365)
Q Consensus 187 ~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------------------- 235 (365)
+|+..++++++..|+++.+++.++.++...+++++|...++++..
T Consensus 513 ----~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 513 ----QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred ----HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 466666666666666666666666555555555555555544321
Q ss_pred ---------cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhC
Q 036703 236 ---------NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLG 305 (365)
Q Consensus 236 ---------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 305 (365)
..|.+ ..++..++.++ ...|++++|+..|++++... |+ ++.+..++.++...|
T Consensus 589 ~~eA~~~l~~~p~~---------~~~~~~La~~~-~~~g~~~~A~~~y~~al~~~-------P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 589 EAEAEALLRQQPPS---------TRIDLTLADWA-QQRGDYAAARAAYQRVLTRE-------PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHHhCCCC---------chHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCC
Confidence 12222 12455677776 58899999999999999887 44 677888899999999
Q ss_pred CCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCC
Q 036703 306 NIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLP 360 (365)
Q Consensus 306 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p 360 (365)
++++|++.|+++++..|+++.++..++.++...|++++|..+|++++...|.+.|
T Consensus 652 ~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 652 DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9999999999999888988888899999999999999999999999888774444
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=7.2e-30 Score=230.77 Aligned_cols=313 Identities=11% Similarity=0.007 Sum_probs=271.4
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
+++.|...|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ...|..++.++...|++++|...++++
T Consensus 91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
+...|+++..+..++. +...|++++|+..++++++. .|.. .......++..+. ..|++++|+..|++++...
T Consensus 171 ~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~-~~~~---~~~~~~~l~~~l~---~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 171 AQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPF-FALE---RQESAGLAVDTLC---AVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc-CCCc---chhHHHHHHHHHH---HCCCHHHHHHHHHHHHhcC
Confidence 9999988888876644 77899999999999999988 7643 1344456678888 9999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703 160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239 (365)
Q Consensus 160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 239 (365)
|.+ ...+..++..+...|+.++. ..+|...|+++++.+|++..++..+|.++...|++++|...+++++...|.
T Consensus 243 p~~--~~~~~~Lg~~l~~~G~~~eA----~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 243 LDG--AALRRSLGLAYYQSGRSREA----KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred CCC--HHHHHHHHHHHHHcCCchhh----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 886 67888889888888886531 124899999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHH
Q 036703 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYL 318 (365)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al 318 (365)
++. ++..++..+ ...|++++|+..|++++... |+ ...+...+.++...|++++|...|++++
T Consensus 317 ~~~---------a~~~La~~l-~~~G~~~eA~~~l~~al~~~-------P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 317 LPY---------VRAMYARAL-RQVGQYTAASDEFVQLAREK-------GVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred CHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 864 667788887 58999999999999999987 44 3445556888899999999999999999
Q ss_pred hhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 319 EWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 319 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
+.+|++.. ..+++|...|.++++..+
T Consensus 380 ~~~P~~~~------------~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 380 QARASHLP------------QSFEEGLLALDGQISAVN 405 (656)
T ss_pred HhChhhch------------hhHHHHHHHHHHHHHhcC
Confidence 99998752 334566666666666554
No 12
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1.3e-29 Score=212.34 Aligned_cols=319 Identities=24% Similarity=0.358 Sum_probs=208.3
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh---------------------------------
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH--------------------------------- 48 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------------------------------- 48 (365)
|+.|+.++.++.+.-|.+..+|+.-+.++..+|+.+...++..+++.
T Consensus 422 YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAI 501 (913)
T KOG0495|consen 422 YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAI 501 (913)
T ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHH
Confidence 56778888888888888888888888888888877777776666653
Q ss_pred -------------------------------------------hCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703 49 -------------------------------------------WMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP 84 (365)
Q Consensus 49 -------------------------------------------~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 84 (365)
.+|. ..+|...+.+....|..+.-..+|++++...|
T Consensus 502 i~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p 581 (913)
T KOG0495|consen 502 IRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP 581 (913)
T ss_pred HHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 2333 34455555555555555555555555555555
Q ss_pred cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh
Q 036703 85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA 164 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 164 (365)
..+.+|+.++......|+...|+.++..+.+. .|++ ..+|+.-..++. ...++++|+.+|.++....|.
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~~-~pns----eeiwlaavKle~---en~e~eraR~llakar~~sgT--- 650 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEA-NPNS----EEIWLAAVKLEF---ENDELERARDLLAKARSISGT--- 650 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-CCCc----HHHHHHHHHHhh---ccccHHHHHHHHHHHhccCCc---
Confidence 55555555555555555555555555555555 5554 556665555555 556666666666666555444
Q ss_pred HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhh
Q 036703 165 EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR 244 (365)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 244 (365)
..+|+.++.++...++.+ +|+.+++.+++.+|+...+|+.+|+++.+.++.+.|+..|...++.+|..
T Consensus 651 eRv~mKs~~~er~ld~~e--------eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~---- 718 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVE--------EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS---- 718 (913)
T ss_pred chhhHHHhHHHHHhhhHH--------HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC----
Confidence 345666666655555433 57777777777777777777777777777777777777777777777776
Q ss_pred HHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc
Q 036703 245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE 323 (365)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 323 (365)
+.+|+.++.+.| ..|..-+|+.+++++...+ |+ +.+|...+.++.+.|+.+.|.....+|++..|+
T Consensus 719 -----ipLWllLakleE-k~~~~~rAR~ildrarlkN-------Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 719 -----IPLWLLLAKLEE-KDGQLVRARSILDRARLKN-------PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred -----chHHHHHHHHHH-HhcchhhHHHHHHHHHhcC-------CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 347777777765 6667777777777777666 43 556677777777777777777777777777776
Q ss_pred hHHHHHHHHHHHh------------------------------hccchhHHHHHHHHHhcCcC
Q 036703 324 NCYAWSKYTELEK------------------------------SLDETERARAIFELAIAQPI 356 (365)
Q Consensus 324 ~~~~~~~~~~~~~------------------------------~~g~~~~A~~~~~~a~~~~~ 356 (365)
+..+|..-+.++- ...++++|++.|.++++.+|
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 6555554443332 22346777777777777777
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.3e-29 Score=229.82 Aligned_cols=312 Identities=11% Similarity=0.063 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM 100 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 100 (365)
..+...|..+...|++++|+..|++++...|++..|..++.++...|++++|+..+.++++.+|++..+|..+|.++...
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 44678899999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhhhcCChhhH--------------------------HHHHHHHHHHHH-----------------
Q 036703 101 GEVDRARNVYECAVEIFLADDHDEA--------------------------EQLFVAFAKFEE----------------- 137 (365)
Q Consensus 101 ~~~~~A~~~~~~a~~~~~~~~~~~~--------------------------~~~~~~~~~~~~----------------- 137 (365)
|++++|+..|..+... .+.+.... ...+..++.++.
T Consensus 208 g~~~eA~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCII-DGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999887665543 22210000 000111111110
Q ss_pred ----------------hccccchhHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH
Q 036703 138 ----------------MGCNCKETDRARCIYKFALDRIPK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV 200 (365)
Q Consensus 138 ----------------~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 200 (365)
.....+.+++|...|++++...+. ......+...+.++...|+.+ .|+..|++++
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~--------eA~~~~~kal 358 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL--------EALADLSKSI 358 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHHH
Confidence 000235789999999999976421 123567888888888889866 6999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 201 RKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 201 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
..+|++...|..++.++...|++++|+..|+++++.+|.++. ++...|.++ ...|++++|+..|++++..
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~lg~~~-~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---------IYYHRAQLH-FIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH-HHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999854 788888887 6899999999999999999
Q ss_pred cccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 281 YFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 281 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
. |+ ...+..+|.++.+.|++++|+..|++++...|+++.++..++.++...|++++|+..|++++...|.+
T Consensus 429 ~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 429 D-------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred C-------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 8 54 66788999999999999999999999999999999999999999999999999999999999998853
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.8e-29 Score=239.33 Aligned_cols=322 Identities=11% Similarity=0.146 Sum_probs=266.4
Q ss_pred ChhhHHHHHHHHHHhCCCchHH--H------------HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQL--W------------NNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR 65 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~--~------------~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 65 (365)
++++|+..|+++++.+|++... | ...+..+...|++++|+..|+++++.+|+ ..++..++.++..
T Consensus 318 ~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA 397 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4788999999999999986431 2 34477788999999999999999999998 7788899999999
Q ss_pred hccHHHHHHHHHHHHHhCCcchHHHHHHHHH------------------------------------------HHhhcch
Q 036703 66 YNEVQRARHIFERLVQCHPYNLSAWINFADF------------------------------------------EMKMGEV 103 (365)
Q Consensus 66 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~------------------------------------------~~~~~~~ 103 (365)
.|++++|+..|+++++.+|++..++..++.+ +...|++
T Consensus 398 ~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~ 477 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW 477 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH
Confidence 9999999999999999999887776655444 3456899
Q ss_pred HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh
Q 036703 104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG 183 (365)
Q Consensus 104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
++|+..|+++++. .|++ +.++..++.++. ..|++++|+..|+++++..|.+ ...+..++.+....++.+.
T Consensus 478 ~eA~~~~~~Al~~-~P~~----~~~~~~LA~~~~---~~G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 478 AQAAELQRQRLAL-DPGS----VWLTYRLAQDLR---QAGQRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCCCHHH
Confidence 9999999999999 9988 889999999999 9999999999999999988876 4455555555444444332
Q ss_pred hhHHH------------------------------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHH
Q 036703 184 IEDAI------------------------------------AGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR 227 (365)
Q Consensus 184 ~~~~~------------------------------------~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~ 227 (365)
....+ .++|+. .++..|.++.++..++.++...|++++|+
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~----~l~~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA----LLRQQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH----HHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 11100 012222 34468999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCC
Q 036703 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGN 306 (365)
Q Consensus 228 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (365)
..|+++++..|.+.. .+..++.++ ...|++++|+..+++++... |+ +..+..++.++...|+
T Consensus 624 ~~y~~al~~~P~~~~---------a~~~la~~~-~~~g~~~eA~~~l~~ll~~~-------p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 624 AAYQRVLTREPGNAD---------ARLGLIEVD-IAQGDLAAARAQLAKLPATA-------NDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHHHhCCCCHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHhccC-------CCChHHHHHHHHHHHhCCC
Confidence 999999999999854 788888887 58999999999999999887 44 6677888999999999
Q ss_pred CccHHHHHHHHHhhCcchH------HHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703 307 IDPCRKLYEKYLEWSPENC------YAWSKYTELEKSLDETERARAIFELAIA 353 (365)
Q Consensus 307 ~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 353 (365)
+++|..+|++++...|+++ .++..++.++...|+.++|...|++++.
T Consensus 687 ~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 687 TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999876543 4677789999999999999999999985
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1.1e-27 Score=221.00 Aligned_cols=337 Identities=11% Similarity=-0.010 Sum_probs=265.3
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|..+|+++++.+|.++.++..++.++...|++++|+..++++++..|+ .. |..++.++...|++++|+..++++
T Consensus 64 ~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~a 142 (765)
T PRK10049 64 QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQA 142 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999998 56 888999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHH----------------------------------------------HH
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYE----------------------------------------------CA 113 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~----------------------------------------------~a 113 (365)
++..|+++.++..++.++...|..+.|+..++ .+
T Consensus 143 l~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 143 LPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 99999999998888888876666555554444 33
Q ss_pred HhhhhcCC---hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHcCCchhhhHHHH
Q 036703 114 VEIFLADD---HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYGDREGIEDAIA 189 (365)
Q Consensus 114 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (365)
++. .|.+ .+............+. ..|++++|+..|+++++..|..+ ....+ ++..+...|+++
T Consensus 223 l~~-~~~~p~~~~~~~~a~~d~l~~Ll---~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e------- 289 (765)
T PRK10049 223 EAL-WHDNPDATADYQRARIDRLGALL---ARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPE------- 289 (765)
T ss_pred Hhh-cccCCccchHHHHHHHHHHHHHH---HhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcH-------
Confidence 332 2222 0111112222122234 67899999999999998754321 23344 466777888866
Q ss_pred HHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhH------HHHhHHHHHHHHHH
Q 036703 190 GKMRLQYEDGVRKNPMN----YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRY------WQRYIYLWINYALY 259 (365)
Q Consensus 190 ~~a~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------~~~~~~~~~~~~~~ 259 (365)
+|+..|+++++.+|.+ ......++..+...|++++|...++++....|....... -..+..+....+..
T Consensus 290 -~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 290 -KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred -HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 7999999999988876 356677777788999999999999999998874321000 00113355667777
Q ss_pred HhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhc
Q 036703 260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSL 338 (365)
Q Consensus 260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 338 (365)
+ ...|++++|+..+++++... |+ +.++..++.++...|++++|++.+++++..+|++..++...+...+..
T Consensus 369 l-~~~g~~~eA~~~l~~al~~~-------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 369 A-KYSNDLPQAEMRARELAYNA-------PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred H-HHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 6 58899999999999999998 55 788999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhcCcCCCCCc
Q 036703 339 DETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 339 g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
|++++|..+++++++..| +.|.
T Consensus 441 ~~~~~A~~~~~~ll~~~P-d~~~ 462 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREP-QDPG 462 (765)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHH
Confidence 999999999999999999 5443
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=4.6e-27 Score=203.10 Aligned_cols=310 Identities=14% Similarity=0.026 Sum_probs=257.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----hHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN----LSAWINFA 94 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~ 94 (365)
....+..|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|..++++++...+.. ...+..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344555678888999999999999999999998 7899999999999999999999999998854322 35688999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh---HHHHHHH
Q 036703 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA---EDLYRKF 171 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~ 171 (365)
.++...|++++|+.+|+++++. .|.+ ..++..++.++. ..|++++|++.++++++..|.+.. ..++..+
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~-~~~~----~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDE-GDFA----EGALQQLLEIYQ---QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcC-Ccch----HHHHHHHHHHHH---HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9999999999999999999998 7776 889999999999 999999999999999987776432 2345566
Q ss_pred HHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHH
Q 036703 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIY 251 (365)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 251 (365)
+..+...|+.+ .|...|+++++.+|++..++..++.++...|++++|...|++++...|.+. ..
T Consensus 187 a~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--------~~ 250 (389)
T PRK11788 187 AQQALARGDLD--------AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL--------SE 250 (389)
T ss_pred HHHHHhCCCHH--------HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH--------HH
Confidence 77777778755 699999999999999999999999999999999999999999999887753 22
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHH
Q 036703 252 LWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY 331 (365)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 331 (365)
.+..++..+ ...|++++|...++++++.. |+...+..++.++.+.|++++|...++++++..|++..+...+
T Consensus 251 ~~~~l~~~~-~~~g~~~~A~~~l~~~~~~~-------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 251 VLPKLMECY-QALGDEAEGLEFLRRALEEY-------PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 556667776 58899999999999999987 5545568899999999999999999999999999887655444
Q ss_pred HHHHhh--ccchhHHHHHHHHHhcCcCCCCCc
Q 036703 332 TELEKS--LDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 332 ~~~~~~--~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
...... .|+..++..++++.++......|+
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 443322 568888888888777654433443
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1e-26 Score=214.72 Aligned_cols=335 Identities=8% Similarity=-0.068 Sum_probs=268.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
+.++|+.++.++....|....++..+|.++...|++++|...|+++++.+|. ..++..++.++...|++++|+..++++
T Consensus 30 ~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 30 QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678999999999989998999999999999999999999999999999998 788999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
++..|+++. +..++.++...|++++|+..++++++. .|++ ..++..++.++. ..+..++|+..++++.. .
T Consensus 110 l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-~P~~----~~~~~~la~~l~---~~~~~e~Al~~l~~~~~-~ 179 (765)
T PRK10049 110 VSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR-APQT----QQYPTEYVQALR---NNRLSAPALGAIDDANL-T 179 (765)
T ss_pred HHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HCCChHHHHHHHHhCCC-C
Confidence 999999999 999999999999999999999999999 9998 888888898887 77777777766665544 2
Q ss_pred CCc-----------------------------------------------hh-----HHHHHH-HHHHHHHcCCchhhhH
Q 036703 160 PKG-----------------------------------------------RA-----EDLYRK-FLAFEKQYGDREGIED 186 (365)
Q Consensus 160 p~~-----------------------------------------------~~-----~~~~~~-~~~~~~~~~~~~~~~~ 186 (365)
|.. .. ...... ++.+ ...|+
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~------ 252 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDR------ 252 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhh------
Confidence 211 00 000000 0001 11122
Q ss_pred HHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703 187 AIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG 265 (365)
Q Consensus 187 ~~~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (365)
...|+..|+++++..|..+ .+...++.++...|++++|+..|+++++..|.+.... ......++..+ ...|
T Consensus 253 --~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~-----~~~~~~L~~a~-~~~g 324 (765)
T PRK10049 253 --YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS-----DEELADLFYSL-LESE 324 (765)
T ss_pred --HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC-----hHHHHHHHHHH-Hhcc
Confidence 3579999999998764322 2333358899999999999999999998877652100 11333444444 4889
Q ss_pred ChhHHHHHHHHHHhccccCCCcc------hh---HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703 266 DLERTRDVYRTLFIFYFSFSPRM------EE---RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 266 ~~~~a~~~~~~a~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 336 (365)
++++|+..++++....|....++ |+ ......++.++...|++++|++.+++++...|+++.++..++.++.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999998875322111 33 3467788999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHhcCcCCCCCc
Q 036703 337 SLDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 337 ~~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
..|++++|.+.+++++...| +.++
T Consensus 405 ~~g~~~~A~~~l~~al~l~P-d~~~ 428 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEP-RNIN 428 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCC-CChH
Confidence 99999999999999999999 4443
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-27 Score=193.87 Aligned_cols=326 Identities=15% Similarity=0.184 Sum_probs=261.7
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHH---
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIF--- 76 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~--- 76 (365)
+|++|+++|..++..+|+.+..|...+.+|...|++++.++...++++++|+ ..+++..+..+...|++++|..-.
T Consensus 130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ 209 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL 209 (606)
T ss_pred cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence 5899999999999999999999999999999999999999999999999999 788888888888777766654321
Q ss_pred ---------------HHHHH--------------hC---Cc---------------------------------------
Q 036703 77 ---------------ERLVQ--------------CH---PY--------------------------------------- 85 (365)
Q Consensus 77 ---------------~~~l~--------------~~---p~--------------------------------------- 85 (365)
++.+. .. |.
T Consensus 210 ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~ 289 (606)
T KOG0547|consen 210 CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEK 289 (606)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHh
Confidence 11111 00 00
Q ss_pred --------------------------c---------hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH
Q 036703 86 --------------------------N---------LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130 (365)
Q Consensus 86 --------------------------~---------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 130 (365)
+ ..++...|.++.-.|+.-.|...|+.+++. .|.. ..+++
T Consensus 290 ~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l-~~~~----~~lyI 364 (606)
T KOG0547|consen 290 GLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL-DPAF----NSLYI 364 (606)
T ss_pred hCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc-Cccc----chHHH
Confidence 1 223444455556667777778888888888 7766 77788
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 036703 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW 210 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~ 210 (365)
.++.+|. ..++.++-...|.++.+.+|.+ +++|..-+++..-.++.+ .|+.-|++++.++|.+.-.+
T Consensus 365 ~~a~~y~---d~~~~~~~~~~F~~A~~ldp~n--~dvYyHRgQm~flL~q~e--------~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 365 KRAAAYA---DENQSEKMWKDFNKAEDLDPEN--PDVYYHRGQMRFLLQQYE--------EAIADFQKAISLDPENAYAY 431 (606)
T ss_pred HHHHHHh---hhhccHHHHHHHHHHHhcCCCC--CchhHhHHHHHHHHHHHH--------HHHHHHHHHhhcChhhhHHH
Confidence 8888888 8888888888999998888887 456666666665555533 69999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc--
Q 036703 211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM-- 288 (365)
Q Consensus 211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~-- 288 (365)
..++....+++.++++...|+.+++..|..++ ++..++..+ ..++++++|.+.|.+++.+.|....+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E---------vy~~fAeiL-tDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPE---------VYNLFAEIL-TDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---------HHHHHHHHH-hhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 99999888899999999999999999999865 777888887 599999999999999999976522221
Q ss_pred hhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 289 EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
+.+-+...+..+-++ +++..|..++++|++++|.+-.++..++.++.+.|+.++|+++|+++..+.
T Consensus 502 ~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred chhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 223344444444444 899999999999999999999999999999999999999999999987654
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=2.2e-25 Score=192.63 Aligned_cols=287 Identities=16% Similarity=0.141 Sum_probs=244.1
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHI 75 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~ 75 (365)
++++|...|+++++.+|++..++..++.++...|++++|+..+++++...+. ...+..++..+...|++++|..+
T Consensus 50 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 129 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEEL 129 (389)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4688999999999999999999999999999999999999999999985432 24678889999999999999999
Q ss_pred HHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh-hHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD-EAEQLFVAFAKFEEMGCNCKETDRARCIYKF 154 (365)
Q Consensus 76 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 154 (365)
|+++++.+|.+..++..++.++...|++++|++.++++++. .|.+.. .....+..++.++. ..|++++|...|++
T Consensus 130 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~ 205 (389)
T PRK11788 130 FLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQAL---ARGDLDAARALLKK 205 (389)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHH---hCCCHHHHHHHHHH
Confidence 99999999989999999999999999999999999999998 765411 12345678888999 99999999999999
Q ss_pred HhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703 155 ALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN-YDTWFDYIRLEERVGNQERVREVYERA 233 (365)
Q Consensus 155 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 233 (365)
+++..|.. ...+..++..+...|+.+ +|...+++++..+|.+ ..++..++.++...|++++|...++++
T Consensus 206 al~~~p~~--~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 206 ALAADPQC--VRASILLGDLALAQGDYA--------AAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHhHCcCC--HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988875 567778888888889865 7999999999988877 467888999999999999999999999
Q ss_pred HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH---hCCCccH
Q 036703 234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC---LGNIDPC 310 (365)
Q Consensus 234 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A 310 (365)
++..|+.. ....++..+ ...|++++|+..++++++.. |+...+..+...... .|+..++
T Consensus 276 ~~~~p~~~----------~~~~la~~~-~~~g~~~~A~~~l~~~l~~~-------P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 276 LEEYPGAD----------LLLALAQLL-EEQEGPEAAQALLREQLRRH-------PSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHhCCCch----------HHHHHHHHH-HHhCCHHHHHHHHHHHHHhC-------cCHHHHHHHHHHhhhccCCccchhH
Confidence 99988753 335677776 58899999999999999997 654444444444443 5688888
Q ss_pred HHHHHHHHh
Q 036703 311 RKLYEKYLE 319 (365)
Q Consensus 311 ~~~~~~al~ 319 (365)
...+++.++
T Consensus 338 ~~~~~~~~~ 346 (389)
T PRK11788 338 LLLLRDLVG 346 (389)
T ss_pred HHHHHHHHH
Confidence 888887775
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.6e-25 Score=193.66 Aligned_cols=330 Identities=15% Similarity=0.182 Sum_probs=220.2
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++.|-..|..+++.+|+|..+.++-|.+....|++..|+.+|++++..+|. +...+..+.+.++.|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 355666666666666666666666666666666666666666666666665 344445555555666666666666666
Q ss_pred HHhCCcchHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhhcCC---------------------------------hh
Q 036703 80 VQCHPYNLSAWINFADFEMKMG---EVDRARNVYECAVEIFLADD---------------------------------HD 123 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~---------------------------------~~ 123 (365)
++++|+++.+...++.+-.... .+..+...+.++-.. .|.+ .+
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 6666655555555555444332 233444444444444 4444 01
Q ss_pred hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC
Q 036703 124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN 203 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 203 (365)
.....++.+|+.+- .+|++++|..+|.++++..|++ .......+++++...|+.. .+..+|+++++..
T Consensus 305 ~~aes~Y~~gRs~H---a~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle--------~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYH---AQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLE--------ESKFCFEKVLKQL 372 (1018)
T ss_pred HHHHHHHHHHHHHH---hhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHH--------HHHHHHHHHHHhC
Confidence 22334555666666 7778888888888777777765 3445556667776777644 5777888888888
Q ss_pred CCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703 204 PMNYDTWFDYIRLEERVG----NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI 279 (365)
Q Consensus 204 p~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 279 (365)
|++.+....+|.+|...+ ..++|..+..++++..|.+. ..|+.++.++ ..++...++.+|.+|+.
T Consensus 373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~---------~a~l~laql~--e~~d~~~sL~~~~~A~d 441 (1018)
T KOG2002|consen 373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS---------EAWLELAQLL--EQTDPWASLDAYGNALD 441 (1018)
T ss_pred cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHH--HhcChHHHHHHHHHHHH
Confidence 888888878887776654 55677777777777777763 4888888886 56777777888888886
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh-----Ccc-----hHHHHHHHHHHHhhccchhHHHHHHH
Q 036703 280 FYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW-----SPE-----NCYAWSKYTELEKSLDETERARAIFE 349 (365)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-----~~~~~~~~~~~~~~~g~~~~A~~~~~ 349 (365)
........ +.+++.++.|.+.+..|++.+|...|.+|+.. +++ +...-++++.++...++++.|..+|.
T Consensus 442 ~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 442 ILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 53222221 34778888888888889999999999888876 222 23357788888888888888888888
Q ss_pred HHhcCcC
Q 036703 350 LAIAQPI 356 (365)
Q Consensus 350 ~a~~~~~ 356 (365)
.+++..|
T Consensus 521 ~Ilkehp 527 (1018)
T KOG2002|consen 521 SILKEHP 527 (1018)
T ss_pred HHHHHCc
Confidence 8888777
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=2e-24 Score=200.06 Aligned_cols=316 Identities=10% Similarity=-0.015 Sum_probs=254.7
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhcc---HHH---
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNE---VQR--- 71 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~---~~~--- 71 (365)
+.+|....+...+..|.+.......+-...+.|+.++|...|+++....++ ..+...++.++.+++. ..+
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 345666777777777999999999999999999999999999999886544 2234467777765543 222
Q ss_pred ----------------------HHHHHHHHHHhCCc--chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHH
Q 036703 72 ----------------------ARHIFERLVQCHPY--NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ 127 (365)
Q Consensus 72 ----------------------A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 127 (365)
+...+.+++...|. ++.+|..+|.++.. ++.++|+..|.+++.. .|++ .
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~----~- 510 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDA----W- 510 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCch----H-
Confidence 33334455556677 88899999999987 7888999999999998 8764 3
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH
Q 036703 128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY 207 (365)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~ 207 (365)
....++..+. ..|++++|+..|++++...|.. ..+...+......|+.. .|...|+++++.+|.+.
T Consensus 511 ~~L~lA~al~---~~Gr~eeAi~~~rka~~~~p~~---~a~~~la~all~~Gd~~--------eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 511 QHRAVAYQAY---QVEDYATALAAWQKISLHDMSN---EDLLAAANTAQAAGNGA--------ARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHHHhccCCCc---HHHHHHHHHHHHCCCHH--------HHHHHHHHHHhcCCccH
Confidence 3666677777 8899999999999987765553 34566677777888755 68899999999988887
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703 208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 287 (365)
..+..++......|++++|...|+++++..|+ .. .+..++.++ ...|++++|+..|++++...
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~---------a~~~LA~~l-~~lG~~deA~~~l~~AL~l~------ 639 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN---------AYVARATIY-RQRHNVPAAVSDLRAALELE------ 639 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhC------
Confidence 77776666666779999999999999999996 32 677788877 58999999999999999998
Q ss_pred chh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 288 MEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 288 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
|+ +..+..+|.++...|++++|+..|+++++.+|+++.++.+++.++...|++++|...|+++++..|
T Consensus 640 -Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 640 -PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 54 778889999999999999999999999999999999999999999999999999999999999988
No 22
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.95 E-value=5.3e-24 Score=178.62 Aligned_cols=321 Identities=22% Similarity=0.412 Sum_probs=261.8
Q ss_pred hhHHHHHHHHHHh-CCCc-----hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHH
Q 036703 3 DHGRNAWDRVVTL-SPRV-----DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQR 71 (365)
Q Consensus 3 ~~A~~~~~~~l~~-~p~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~ 71 (365)
.+-+..|.+|++. +|.- ..+|..+|.+|...|+++.|+.+|+++++..-. ..+|..+|....++.+++.
T Consensus 364 ~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~ 443 (835)
T KOG2047|consen 364 AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA 443 (835)
T ss_pred HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence 4556778888764 6653 578999999999999999999999999986533 5789999999999999999
Q ss_pred HHHHHHHHHHhCC------------------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703 72 ARHIFERLVQCHP------------------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA 133 (365)
Q Consensus 72 A~~~~~~~l~~~p------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (365)
|..+.+++..... .+..+|..++++....|-++....+|++++.. ...+|.+..++|
T Consensus 444 Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-----riaTPqii~NyA 518 (835)
T KOG2047|consen 444 ALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-----RIATPQIIINYA 518 (835)
T ss_pred HHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----hcCCHHHHHHHH
Confidence 9999999876321 15678999999999999999999999999998 334499999999
Q ss_pred HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH-HHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC--HHHH
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN--YDTW 210 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~--~~~~ 210 (365)
.++. ....++++.++|++++...+.....++|..|.. +-.+.|... .+.|+.+|+++|..+|.. ..++
T Consensus 519 mfLE---eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k------lEraRdLFEqaL~~Cpp~~aKtiy 589 (835)
T KOG2047|consen 519 MFLE---EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK------LERARDLFEQALDGCPPEHAKTIY 589 (835)
T ss_pred HHHH---hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999 999999999999999999888777889999854 555666554 568999999999999843 2478
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh
Q 036703 211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE 290 (365)
Q Consensus 211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 290 (365)
+.++.+....|-...|..+|+++....+......+|+- ++.-- ...-.+...+.+|++|++..|+. .-
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni-------~I~ka-ae~yGv~~TR~iYekaIe~Lp~~----~~ 657 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNI-------YIKKA-AEIYGVPRTREIYEKAIESLPDS----KA 657 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHHH-HHHhCCcccHHHHHHHHHhCChH----HH
Confidence 88999999999999999999999888777655443332 22211 12335678899999999997331 11
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhh-Ccc-hHHHHHHHHHHHhhccchhHHHHHHH
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEW-SPE-NCYAWSKYTELEKSLDETERARAIFE 349 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~ 349 (365)
.++-..+++++.+.|.++.|+.+|.-+.+. +|. ++++|..+-.++.++|+.+.-+++++
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 567788999999999999999999999887 453 78899999999999999777776653
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=1.8e-24 Score=188.04 Aligned_cols=337 Identities=15% Similarity=0.132 Sum_probs=256.3
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|..++..+++++|.++.+|..+|.++.+.|+.+++...+-.|-.++|+ ...|..+++...++|++.+|+-+|.++
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999 799999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
++.+|.+.......+.++.+.|+..+|...|.+++.. .|.. ...........++.+. ..++-+.|.+.++.++..
T Consensus 234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~-~p~~d~er~~d~i~~~~~~~~---~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL-DPPVDIERIEDLIRRVAHYFI---THNERERAAKALEGALSK 309 (895)
T ss_pred HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999 8743 1112334455677777 778889999999999984
Q ss_pred CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHH----------HHHH------HHHHcCCC----CHHH-HHHHHHHH
Q 036703 159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMR----------LQYE------DGVRKNPM----NYDT-WFDYIRLE 217 (365)
Q Consensus 159 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----------~~~~------~~l~~~p~----~~~~-~~~~~~~~ 217 (365)
..+....+-...++.+......++.....+..... ...+ .++-.-|+ +..+ ...++.+.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 43322223334444444443333221111110000 0000 00000111 1223 44444455
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHH
Q 036703 218 ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKY 297 (365)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 297 (365)
...++..++...+..--...|.+. +.+++..+..+ ...|.++.|+.+|.......+. ....+|..+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~--------~dL~~d~a~al-~~~~~~~~Al~~l~~i~~~~~~-----~~~~vw~~~ 455 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDD--------VDLYLDLADAL-TNIGKYKEALRLLSPITNREGY-----QNAFVWYKL 455 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhh--------HHHHHHHHHHH-HhcccHHHHHHHHHHHhcCccc-----cchhhhHHH
Confidence 555666666555543322224432 55888899998 6999999999999999987522 226689999
Q ss_pred HHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 298 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
|.+++..|.++.|..+|++++...|++.++...++.++...|+.++|.+.++....-+
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999999999999998876333
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.4e-25 Score=187.73 Aligned_cols=303 Identities=13% Similarity=0.105 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHhc--CChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 21 QLWNNYIRMEENL--GNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 21 ~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
.++..+|..+... -+..+|+..|++.-...++ .-....+|..|...+++++|+.+|+.+-+..|--..-.-.+...+
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 4455566555543 4567899999995566666 444456889999999999999999999999996665555555566
Q ss_pred HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703 98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ 177 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 177 (365)
....+.-+---+-+..++. .|.. |+.|..+|+++. -+++.+.|++.|+++++.+|.. +..+..++.=...
T Consensus 398 WHLq~~v~Ls~Laq~Li~~-~~~s----PesWca~GNcfS---LQkdh~~Aik~f~RAiQldp~f--aYayTLlGhE~~~ 467 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLIDT-DPNS----PESWCALGNCFS---LQKDHDTAIKCFKRAIQLDPRF--AYAYTLLGHESIA 467 (638)
T ss_pred HHHHhhHHHHHHHHHHHhh-CCCC----cHHHHHhcchhh---hhhHHHHHHHHHHHhhccCCcc--chhhhhcCChhhh
Confidence 6655544444455667777 7777 999999999999 9999999999999999999874 2222222221112
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703 178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA 257 (365)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 257 (365)
..+ .++|...|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|+.++|.+. .+...++
T Consensus 468 ~ee--------~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---------vi~~~~g 530 (638)
T KOG1126|consen 468 TEE--------FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---------VILCHIG 530 (638)
T ss_pred hHH--------HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------hHHhhhh
Confidence 222 34799999999999999999999999999999999999999999999999984 3666777
Q ss_pred HHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh
Q 036703 258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS 337 (365)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 337 (365)
..+ .+.|+.++|+.+|++|+..+|.. +---...+.++...+++++|...+++.-+.-|+...++..++.++.+
T Consensus 531 ~~~-~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 531 RIQ-HQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred HHH-HHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 777 48999999999999999998543 33445667888889999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhcCcCC
Q 036703 338 LDETERARAIFELAIAQPIL 357 (365)
Q Consensus 338 ~g~~~~A~~~~~~a~~~~~~ 357 (365)
.|+.+.|..-|-=|..++|.
T Consensus 604 ~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 604 LGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HccchHHHHhhHHHhcCCCc
Confidence 99999999999999999985
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.5e-24 Score=200.79 Aligned_cols=298 Identities=12% Similarity=-0.003 Sum_probs=251.1
Q ss_pred HHHHHHHHHHhCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703 5 GRNAWDRVVTLSPR--VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQC 82 (365)
Q Consensus 5 A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 82 (365)
+...+.+++...|. ++.+|..+|.++.. |++.+|+..+.+++...|+......++..+...|++++|+..|++++..
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 45566666777777 88999999999987 7888999999999999998545666677778899999999999998877
Q ss_pred CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.|. ...+..+|.++.+.|++++|..+|+++++. .|.. ......++.... ..|++++|+..|+++++..|+
T Consensus 539 ~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~P~~----~~l~~~La~~l~---~~Gr~~eAl~~~~~AL~l~P~- 608 (987)
T PRK09782 539 DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR-GLGD----NALYWWLHAQRY---IPGQPELALNDLTRSLNIAPS- 608 (987)
T ss_pred CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcc----HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHhCCC-
Confidence 664 556788899999999999999999999998 7776 666666666666 679999999999999999985
Q ss_pred hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
...+..++.++.+.|+.+ .|+..|++++..+|+++.++..+|.++...|++++|+..|+++++..|.++.
T Consensus 609 --~~a~~~LA~~l~~lG~~d--------eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 609 --ANAYVARATIYRQRHNVP--------AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred --HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 568888888888999866 6999999999999999999999999999999999999999999999998854
Q ss_pred hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc
Q 036703 243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP 322 (365)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 322 (365)
++..++..+ ...|++++|+..|++++...|+. ..+...++.+.....++..|.+.++++...+|
T Consensus 679 ---------a~~nLA~al-~~lGd~~eA~~~l~~Al~l~P~~------a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 679 ---------LIRQLAYVN-QRLDDMAATQHYARLVIDDIDNQ------ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred ---------HHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCC------chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 788888887 58999999999999999998433 45667888888888999999999999999998
Q ss_pred chHHHHHHHHHHHhhccc
Q 036703 323 ENCYAWSKYTELEKSLDE 340 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~ 340 (365)
+.. +-...+.++...++
T Consensus 743 ~~~-a~~~~g~~~~~~~~ 759 (987)
T PRK09782 743 DSS-IGLRSGAMSTANNN 759 (987)
T ss_pred cch-hccccchHhhhccc
Confidence 777 66666666665544
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.9e-25 Score=184.34 Aligned_cols=290 Identities=14% Similarity=0.137 Sum_probs=252.9
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
..+|...|++.-...++..-+...+|+.|+..+++++|.++|+.+-+..|- ...---|...++...+.-+--.+-+..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467899999966778887777788999999999999999999999999998 3333344455555555444444556688
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
..+|++|+.|..+|.++.-+++.+.|+++|++|++. .|.. .-++..+|.=+. .+.++|.|...|+.|+..+|
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-dp~f----aYayTLlGhE~~---~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-DPRF----AYAYTLLGHESI---ATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-CCcc----chhhhhcCChhh---hhHHHHhHHHHHHhhhcCCc
Confidence 899999999999999999999999999999999999 8876 888898888888 89999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
.+ ...|+.++..+.+.+..+ .|.-.|++|+..+|.+..+...+|.++.+.|+.++|+.+|++|+..+|.+
T Consensus 487 rh--YnAwYGlG~vy~Kqek~e--------~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 487 RH--YNAWYGLGTVYLKQEKLE--------FAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hh--hHHHHhhhhheeccchhh--------HHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 86 789999999999988755 69999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHh
Q 036703 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLE 319 (365)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 319 (365)
+- .....+..+ ...+++++|+..++.....- |+ ..++..+|.++.+.|+.+.|+..|.-|..
T Consensus 557 ~l---------~~~~~~~il-~~~~~~~eal~~LEeLk~~v-------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 557 PL---------CKYHRASIL-FSLGRYVEALQELEELKELV-------PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred ch---------hHHHHHHHH-HhhcchHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 64 444566665 58999999999999999887 55 67889999999999999999999999999
Q ss_pred hCcchHH
Q 036703 320 WSPENCY 326 (365)
Q Consensus 320 ~~p~~~~ 326 (365)
++|.-.+
T Consensus 620 ldpkg~~ 626 (638)
T KOG1126|consen 620 LDPKGAQ 626 (638)
T ss_pred CCCccch
Confidence 9996544
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=7.1e-23 Score=186.20 Aligned_cols=338 Identities=10% Similarity=-0.010 Sum_probs=252.1
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFE 77 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~ 77 (365)
+++.|+..|+++++.+|+++.....++.++...|+.++|+..+++++ +|. ......++..+...|++++|+.+|+
T Consensus 49 d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 49 DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57889999999999999986444488888989999999999999999 454 4455556889999999999999999
Q ss_pred HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
++++.+|+++.++..++..+...++.++|++.+++++.. .|.. ... ..++.++. ..++..+|+..|+++++
T Consensus 127 kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~----~~~-l~layL~~---~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 127 SSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTV----QNY-MTLSYLNR---ATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-Ccch----HHH-HHHHHHHH---hcchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8874 333 55566666 67777779999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHcCCchhhhH----------------------------------------HHH--------
Q 036703 158 RIPKGRAEDLYRKFLAFEKQYGDREGIED----------------------------------------AIA-------- 189 (365)
Q Consensus 158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~-------- 189 (365)
..|.+ ..++..+.......|......+ ...
T Consensus 198 ~~P~n--~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LAPTS--EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 99986 3344444333333221110000 001
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q 036703 190 --------------------------------------------------------------------GKMRLQYEDGVR 201 (365)
Q Consensus 190 --------------------------------------------------------------------~~a~~~~~~~l~ 201 (365)
++|..+|++++.
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 445555555554
Q ss_pred cCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch------hhhHHHHhHHHHHHHHHHHhhccCChhH
Q 036703 202 KNP------MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE------EKRYWQRYIYLWINYALYKEVDAGDLER 269 (365)
Q Consensus 202 ~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (365)
..| .+......+.-.+...+++++|..++++..+..|... .......+.......+..+ ...|+..+
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~-~~~gdl~~ 434 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL-VALNDLPT 434 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH-HHcCCHHH
Confidence 331 1112223344445556666666666666655444100 0000011233444456655 57899999
Q ss_pred HHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHH
Q 036703 270 TRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIF 348 (365)
Q Consensus 270 a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 348 (365)
|.+.+++.+... |. +.+...++.++...|.+.+|+..++.+...+|++..+....+...+..|++.+|..+.
T Consensus 435 Ae~~le~l~~~a-------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 435 AQKKLEDLSSTA-------PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999998 54 7888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCCCCC
Q 036703 349 ELAIAQPILDLP 360 (365)
Q Consensus 349 ~~a~~~~~~~~p 360 (365)
+.+++..| +.|
T Consensus 508 ~~l~~~~P-e~~ 518 (822)
T PRK14574 508 DDVISRSP-EDI 518 (822)
T ss_pred HHHHhhCC-Cch
Confidence 99999999 444
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.9e-24 Score=172.01 Aligned_cols=307 Identities=14% Similarity=0.116 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
..+...|.-+.+.|++++|+++|..|++++|+ +..+...+-+|...|++++..+...++++++|+...++++.+..+..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 34566788889999999999999999999999 77888899999999999999999999999999999999999999999
Q ss_pred hcchHHHHHH------------------HHHHHhhh----------------hcCC---------------------hh-
Q 036703 100 MGEVDRARNV------------------YECAVEIF----------------LADD---------------------HD- 123 (365)
Q Consensus 100 ~~~~~~A~~~------------------~~~a~~~~----------------~~~~---------------------~~- 123 (365)
.|++++|+.- .++.++.. .|.. .+
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 9998887522 22222210 0110 00
Q ss_pred ------------------------------------------------hHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703 124 ------------------------------------------------EAEQLFVAFAKFEEMGCNCKETDRARCIYKFA 155 (365)
Q Consensus 124 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 155 (365)
.....+...|.++. -.|+.-.|..-|+.+
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f---L~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF---LKGDSLGAQEDFDAA 352 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh---hcCCchhhhhhHHHH
Confidence 00112223334444 678888999999999
Q ss_pred hccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 036703 156 LDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIA 235 (365)
Q Consensus 156 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 235 (365)
|+..|... .+|...+..+.+..+.. +....|.++..++|.++++++..|++..-.+++++|..-|++++.
T Consensus 353 I~l~~~~~--~lyI~~a~~y~d~~~~~--------~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 353 IKLDPAFN--SLYIKRAAAYADENQSE--------KMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred HhcCcccc--hHHHHHHHHHhhhhccH--------HHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988864 34555555665555544 678899999999999999999999999999999999999999999
Q ss_pred cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHH
Q 036703 236 NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLY 314 (365)
Q Consensus 236 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~ 314 (365)
.+|.+. ..++..+... .+.+.++++...|+.+.+.. |. ++++..+++++...++|++|.+.|
T Consensus 423 L~pe~~---------~~~iQl~~a~-Yr~~k~~~~m~~Fee~kkkF-------P~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 423 LDPENA---------YAYIQLCCAL-YRQHKIAESMKTFEEAKKKF-------PNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred cChhhh---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC-------CCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 999984 2344444433 37789999999999999998 66 788899999999999999999999
Q ss_pred HHHHhhCcc------hHHHHHHHHHHHh-hccchhHHHHHHHHHhcCcCC
Q 036703 315 EKYLEWSPE------NCYAWSKYTELEK-SLDETERARAIFELAIAQPIL 357 (365)
Q Consensus 315 ~~al~~~p~------~~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~~ 357 (365)
++++++.|. ++..++.-+.+.. -.+++..|..++++|++.+|.
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence 999999998 5554444443333 248999999999999999984
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-23 Score=167.11 Aligned_cols=315 Identities=17% Similarity=0.206 Sum_probs=235.5
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHH---HHHHHHHHHhccHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW---LSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
.+.|+..|..++...|-+-.+|..++.+.... ......+..-|....| ..+..++......+++..-++.
T Consensus 180 ~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~ 252 (559)
T KOG1155|consen 180 LSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKER 252 (559)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999988999999999888764421 1122222222321222 1233444444456666666666
Q ss_pred HHHh-CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH-------------------------------H
Q 036703 79 LVQC-HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA-------------------------------E 126 (365)
Q Consensus 79 ~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------------------------------~ 126 (365)
.... .|.+..+-...|.+.....++++|+..|+..++. .|-+ -+. +
T Consensus 253 l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYR-l~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ 330 (559)
T KOG1155|consen 253 LSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYR-LDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP 330 (559)
T ss_pred HHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCc-chhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc
Confidence 6665 6666666666666666677777777777777766 6543 111 2
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC
Q 036703 127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN 206 (365)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~ 206 (365)
+.....|++|. -.++.++|..+|+++++.+|.. ..+|...+.=+....+.. .|+..|+++++.+|.+
T Consensus 331 ETCCiIaNYYS---lr~eHEKAv~YFkRALkLNp~~--~~aWTLmGHEyvEmKNt~--------AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 331 ETCCIIANYYS---LRSEHEKAVMYFKRALKLNPKY--LSAWTLMGHEYVEMKNTH--------AAIESYRRAVDINPRD 397 (559)
T ss_pred cceeeehhHHH---HHHhHHHHHHHHHHHHhcCcch--hHHHHHhhHHHHHhcccH--------HHHHHHHHHHhcCchh
Confidence 23334455666 7788999999999999999986 678888877666666544 6999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703 207 YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286 (365)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 286 (365)
..+|+.+|+.|.-.+-..=|.-.|+++++.-|.+.. +|..+|.+|+ +.++.++|++.|++++....
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR---------lw~aLG~CY~-kl~~~~eAiKCykrai~~~d---- 463 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR---------LWVALGECYE-KLNRLEEAIKCYKRAILLGD---- 463 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH---------HHHHHHHHHH-HhccHHHHHHHHHHHHhccc----
Confidence 999999999999999999999999999999999854 8999999995 99999999999999998842
Q ss_pred cchhHHHHHHHHHHHHHhCCCccHHHHHHHHHh-------hCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLE-------WSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
.+...+..+|.++.+.++.++|..+|++.++ ..|+...+...++..+.+.+++++|.....+++.-
T Consensus 464 --te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 --TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred --cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 1256788999999999999999999999988 45767788888999999999988888776666654
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.94 E-value=3.7e-26 Score=187.52 Aligned_cols=261 Identities=16% Similarity=0.225 Sum_probs=96.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703 58 SYIKFKLRYNEVQRARHIFERLVQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135 (365)
Q Consensus 58 ~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
.++.++...|++++|.+++.+.+.. .|+++..|..++.+....++++.|+..|++++.. .+.+ +..+..++.+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~~~----~~~~~~l~~l 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DKAN----PQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc----cccccccccc
Confidence 4455555555555555555443332 2455555555555555555555555555555555 4433 4444444444
Q ss_pred HHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHH
Q 036703 136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDY 213 (365)
Q Consensus 136 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~ 213 (365)
. ..+++++|..+++++.+..++ ...+..++.++...++.+ ++...++++... .|.++..|..+
T Consensus 88 -~---~~~~~~~A~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 88 -L---QDGDPEEALKLAEKAYERDGD---PRYLLSALQLYYRLGDYD--------EAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp -------------------------------------H-HHHTT-HH--------HHHHHHHHHHH-T---T-HHHHHHH
T ss_pred -c---ccccccccccccccccccccc---cchhhHHHHHHHHHhHHH--------HHHHHHHHHHhccCCCCCHHHHHHH
Confidence 4 455555555555555543332 234444444444555433 344444443332 25667778888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHH
Q 036703 214 IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRI 293 (365)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 293 (365)
|.++...|+.++|+..|+++++..|++.. ++..++.++ ...|+.++++.+++...+..|+. +.+
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------~~~~l~~~l-i~~~~~~~~~~~l~~~~~~~~~~------~~~ 216 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELDPDDPD---------ARNALAWLL-IDMGDYDEAREALKRLLKAAPDD------PDL 216 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHH-CTTCHHHHHHHHHHHHHHH-HTS------CCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHH-HHCCChHHHHHHHHHHHHHCcCH------HHH
Confidence 88888888888888888888888888754 555566665 57788888777777777765332 445
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703 294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
|..+|.++...|++++|..+|++++..+|+++.+...++.++...|+.++|..++++++..
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6788888888899999999999999999999999999999999999999999998888753
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.1e-22 Score=162.10 Aligned_cols=307 Identities=15% Similarity=0.149 Sum_probs=243.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--cchHHHHHH
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP--YNLSAWINF 93 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~ 93 (365)
..++-..+.+|.++...|....|+..|..++...|- =.+|..+..+.. +.+ .....+..-| .+...-.-+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e----~~~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIE----ILSILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHH----HHHHHHhcCcccchHHHHHHH
Confidence 344666778899999999999999999999988887 467777776653 222 2223333334 223333445
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch-hHHHHHHHH
Q 036703 94 ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFL 172 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~ 172 (365)
+..+....+.++++.-+++....++|.+ ..+-...|.+.. .+.++++|+.+|+...+.+|-.- ..+.+....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~----~~i~~~~A~~~y---~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNS----MYIKTQIAAASY---NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcc----HHHHHHHHHHHh---hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 6677777789999999999888867776 777777888888 89999999999999999988631 122222211
Q ss_pred HHHHH-------------c-----------CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 036703 173 AFEKQ-------------Y-----------GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVRE 228 (365)
Q Consensus 173 ~~~~~-------------~-----------~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 228 (365)
..... . |++-.+. ...++|+..|+++++++|+...+|..+|.-+...++...|+.
T Consensus 307 Yv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr-~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 307 YVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR-SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH-HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 11100 0 1111110 113689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCc
Q 036703 229 VYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNID 308 (365)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (365)
.|++|++.+|.+. ..|..+|+.|+ -++.+.-|+-.|++|....|. ++.+|..+|++|.+.++.+
T Consensus 386 sYRrAvdi~p~Dy---------RAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPn------DsRlw~aLG~CY~kl~~~~ 449 (559)
T KOG1155|consen 386 SYRRAVDINPRDY---------RAWYGLGQAYE-IMKMHFYALYYFQKALELKPN------DSRLWVALGECYEKLNRLE 449 (559)
T ss_pred HHHHHHhcCchhH---------HHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHhccHH
Confidence 9999999999984 49999999996 899999999999999999842 3778899999999999999
Q ss_pred cHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703 309 PCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 309 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
+|+++|.+++.....+..++..+|.++...++..+|...|++.++.
T Consensus 450 eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 450 EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999998888999999999999999999999999999873
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.6e-23 Score=178.66 Aligned_cols=323 Identities=13% Similarity=0.098 Sum_probs=221.5
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCh--hHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNV--AGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~--~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
+..|..+|..+-.++-.....|..-+.++...|.. +.|.+.|...++.+|+ ....+.-|.+....|+|-.|..+|++
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence 46788899999888777666777777777777765 8999999999999998 67888889999999999999999999
Q ss_pred HHHhCCcc-hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcc-----------------
Q 036703 79 LVQCHPYN-LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGC----------------- 140 (365)
Q Consensus 79 ~l~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 140 (365)
++.++|.. ++..+..|.++.+.|..+.|+..|+++++. .|.+ ..+...++.+-....
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL-dp~~----v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~ 264 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL-DPTC----VSALVALGEVDLNFNDSDSYKKGVQLLQRAYK 264 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc-Chhh----HHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 99999964 567788889999999999999999999999 8876 555555554433000
Q ss_pred -----------------ccchhHHHHHHHHHHhccCCCc-hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 141 -----------------NCKETDRARCIYKFALDRIPKG-RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 141 -----------------~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
..|++..+..+...++...... ....-++.++..+...|+++ +|...|.++++.
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e--------kA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE--------KAFKYYMESLKA 336 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHHHcc
Confidence 4455555555555555432111 12233444555555556544 577777777777
Q ss_pred CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc----CChhHHHHHHHHH
Q 036703 203 NPMN-YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA----GDLERTRDVYRTL 277 (365)
Q Consensus 203 ~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~a 277 (365)
+|++ .-.++.+|+++...|+.+.+..+|+++++..|++.. ....+|.+|. .. ...+.|..+..++
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e---------tm~iLG~Lya-~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE---------TMKILGCLYA-HSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH---------HHHHHHhHHH-hhhhhhHHHHHHHHHHHHH
Confidence 7666 555667777777777777777777777777777643 3333444432 22 2446666667776
Q ss_pred HhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh-----CcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 278 FIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW-----SPENCYAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
++..|. +.+.|..++.++.. ++.-.+...|.+|+.. .+--+.+.++.|.++...|++.+|...|.+++
T Consensus 407 ~~~~~~------d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 407 LEQTPV------DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred Hhcccc------cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 666521 25556666666543 3444446666666632 22235677777777777788888888888877
Q ss_pred cC
Q 036703 353 AQ 354 (365)
Q Consensus 353 ~~ 354 (365)
..
T Consensus 480 ~~ 481 (1018)
T KOG2002|consen 480 GK 481 (1018)
T ss_pred hh
Confidence 66
No 33
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.93 E-value=4.1e-22 Score=186.11 Aligned_cols=318 Identities=15% Similarity=0.139 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSP-RVDQLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
+.|+.+|+++.+... -+...|..+...+.+.|+++.|.++|+++.+. .|+..+|..++..+.+.|++++|..+|.++
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444444443311 11344444444444444444444444444432 233444444444444444444444444444
Q ss_pred HHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh--hhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703 80 VQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEI--FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA 155 (365)
Q Consensus 80 l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 155 (365)
... .| +..+|..+...+.+.|+.++|.++|+++... +...+ ..+|..+...+. +.|++++|.++|+++
T Consensus 534 ~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD----~vTynaLI~ay~---k~G~ldeA~elf~~M 605 (1060)
T PLN03218 534 RSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD----HITVGALMKACA---NAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHH---HCCCHHHHHHHHHHH
Confidence 332 23 3444444444444444444444444444331 01111 334444444444 444444444444444
Q ss_pred hccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703 156 LDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEERVGNQERVREVYERA 233 (365)
Q Consensus 156 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 233 (365)
.+..... ....|..++..+.+.|+.+ +|..+|+++.+. .| +...|..++..+...|++++|..+++++
T Consensus 606 ~e~gi~p-~~~tynsLI~ay~k~G~~d--------eAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 606 HEYNIKG-TPEVYTIAVNSCSQKGDWD--------FALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHcCCCC-ChHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4432111 1234444444444444432 344455444442 22 2344444445555555555555555554
Q ss_pred HhcC-CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHH
Q 036703 234 IANV-PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK 312 (365)
Q Consensus 234 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 312 (365)
.+.. +.+ ...+..++..+ ...|++++|..+|+.+...... |+...|..++..+.+.|++++|.+
T Consensus 676 ~k~G~~pd---------~~tynsLI~ay-~k~G~~eeA~~lf~eM~~~g~~-----PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 676 RKQGIKLG---------TVSYSSLMGAC-SNAKNWKKALELYEDIKSIKLR-----PTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred HHcCCCCC---------HHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4431 111 11344444444 3555555555555555432111 444555555555555555555555
Q ss_pred HHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703 313 LYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 313 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
+|+++... .| +...|..+...+.+.|+.++|..++.++++.
T Consensus 741 lf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 741 VLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 55555433 23 3444444555555555555555555555544
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.93 E-value=1.2e-25 Score=184.50 Aligned_cols=270 Identities=16% Similarity=0.219 Sum_probs=116.8
Q ss_pred HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhC--CC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH
Q 036703 14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWM--PD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW 90 (365)
Q Consensus 14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 90 (365)
+..|. ...+.+|.++...|++++|.+++.+.+... |+ ...|..++.+....++++.|+..|++++..++.++..+
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566 334577999999999999999997776544 55 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHH
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 170 (365)
..++.+ ...+++++|.++++++.+. .++ +..+..++.++. ..++++++..+++++....+...+..+|..
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~-~~~-----~~~l~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 151 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYER-DGD-----PRYLLSALQLYY---RLGDYDEAEELLEKLEELPAAPDSARFWLA 151 (280)
T ss_dssp -------------------------------------------H-HH---HTT-HHHHHHHHHHHHH-T---T-HHHHHH
T ss_pred cccccc-ccccccccccccccccccc-ccc-----cchhhHHHHHHH---HHhHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 999998 7899999999999999887 543 677788888888 999999999999997764433334789999
Q ss_pred HHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhH
Q 036703 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI 250 (365)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 250 (365)
++.++.+.|+.+ +|+..|+++++.+|++..++..++.++...|+.++++..+....+..|.++.
T Consensus 152 ~a~~~~~~G~~~--------~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~-------- 215 (280)
T PF13429_consen 152 LAEIYEQLGDPD--------KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD-------- 215 (280)
T ss_dssp HHHHHHHCCHHH--------HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC--------
T ss_pred HHHHHHHcCCHH--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH--------
Confidence 999999999865 7999999999999999999999999999999999999999998888777654
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703 251 YLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 320 (365)
+|..++..+ ...|++++|+..|+++++.. |+ +.+...+++++...|+.++|..++.+++..
T Consensus 216 -~~~~la~~~-~~lg~~~~Al~~~~~~~~~~-------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 216 -LWDALAAAY-LQLGRYEEALEYLEKALKLN-------PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -HCHHHHHHH-HHHT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHT------------------
T ss_pred -HHHHHHHHh-cccccccccccccccccccc-------ccccccccccccccccccccccccccccccccc
Confidence 777788887 68999999999999999988 54 888999999999999999999999998753
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.93 E-value=1.5e-21 Score=182.38 Aligned_cols=316 Identities=12% Similarity=0.083 Sum_probs=268.0
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++.|..+|+.... |+ ...|..+...+.+.|+++.|..+|+++.+. .|+...|..++..+.+.|+.+.|..+|+++
T Consensus 422 ~~eAl~lf~~M~~--pd-~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 422 VKEAFRFAKLIRN--PT-LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred HHHHHHHHHHcCC--CC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 4677777776654 65 788999999999999999999999999875 456789999999999999999999999999
Q ss_pred HHhCC-cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 80 VQCHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 80 l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
..... .+..+|..+...|.+.|++++|.++|+++.+.+...+ ..+|..++..+. +.|++++|.++|+++...
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD----~vTYnsLI~a~~---k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD----RVVFNALISACG---QSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh
Confidence 87542 2789999999999999999999999999987634444 789999999999 999999999999998752
Q ss_pred ----CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703 159 ----IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN-PMNYDTWFDYIRLEERVGNQERVREVYERA 233 (365)
Q Consensus 159 ----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 233 (365)
.|+ ...|..++..+.+.|+.+ +|..+|+.+.+.+ +.+...|..++..+.+.|++++|..+|.++
T Consensus 572 ~~gi~PD---~vTynaLI~ay~k~G~ld--------eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 572 THPIDPD---HITVGALMKACANAGQVD--------RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred cCCCCCc---HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 343 568888888888999855 7999999999865 557789999999999999999999999999
Q ss_pred Hhc--CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHH
Q 036703 234 IAN--VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCR 311 (365)
Q Consensus 234 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 311 (365)
.+. .|+. ..+..+...+ ...|++++|.++++.+.+.... |+...|..++..|.+.|++++|.
T Consensus 641 ~~~Gv~PD~----------~TynsLI~a~-~k~G~~eeA~~l~~eM~k~G~~-----pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 641 KKKGVKPDE----------VFFSALVDVA-GHAGDLDKAFEILQDARKQGIK-----LGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HHcCCCCCH----------HHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 886 4442 2555566665 4889999999999999886422 67889999999999999999999
Q ss_pred HHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 312 KLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 312 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
++|+++... .| +...|..++..+.+.|+.++|.++|+++....
T Consensus 705 ~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 705 ELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999998764 45 67889999999999999999999999987653
No 36
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.93 E-value=3.3e-22 Score=168.02 Aligned_cols=170 Identities=16% Similarity=0.348 Sum_probs=137.8
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
|+..-..|++++....+-+.+|..|..+...+|++...+..|.+++..-|- ..+|..+..+..+.|-++-+..+|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 345567889999876777889999999999999999999999999999887 58999999999999999999999999
Q ss_pred HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh-----------------------hcCC--------------
Q 036703 79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF-----------------------LADD-------------- 121 (365)
Q Consensus 79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~~~-------------- 121 (365)
-++..|.. -..+..++...++.++|.+.|...+... +|+.
T Consensus 164 YLk~~P~~---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 164 YLKVAPEA---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHhcCHHH---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 99999965 3455667778888888888777776531 1110
Q ss_pred ---hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHH
Q 036703 122 ---HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK-GRAEDLYRKFLAFEKQ 177 (365)
Q Consensus 122 ---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~ 177 (365)
.+.-..+|..+|++|. +.|.+++|+.+|++++...-. .+...++..|+.++..
T Consensus 241 ~rftDq~g~Lw~SLAdYYI---r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYI---RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred ccCcHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHH
Confidence 2234578999999999 999999999999999986443 3356788888777653
No 37
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=2.8e-22 Score=184.71 Aligned_cols=298 Identities=12% Similarity=0.080 Sum_probs=240.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCcchHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQC--HPYNLSAWINFADFE 97 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~ 97 (365)
..++..+...|.+.|++++|.++|+++.. ++...|..++..+.+.|+.++|..+|+++... .| +..++..+...+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~ 335 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIF 335 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 44567778888889999999999887742 45678889999999999999999999888763 45 677888888888
Q ss_pred HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703 98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ 177 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 177 (365)
.+.|.+++|.+++..+++.+.+.+ ..++..++..|. +.|++++|.++|++..+ |+ ...|..++..+.+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d----~~~~~~Li~~y~---k~G~~~~A~~vf~~m~~--~d---~~t~n~lI~~y~~ 403 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLD----IVANTALVDLYS---KWGRMEDARNVFDRMPR--KN---LISWNALIAGYGN 403 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCC----eeehHHHHHHHH---HCCCHHHHHHHHHhCCC--CC---eeeHHHHHHHHHH
Confidence 899999999999999888844555 778888899999 99999999999988764 22 4578888888888
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHH
Q 036703 178 YGDREGIEDAIAGKMRLQYEDGVRKN-PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINY 256 (365)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 256 (365)
.|..+ +|..+|+++.+.. .-+...+..++..+...|..++|..+|+.+.+..+-.+. ...+..+
T Consensus 404 ~G~~~--------~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~l 468 (697)
T PLN03081 404 HGRGT--------KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACM 468 (697)
T ss_pred cCCHH--------HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhH
Confidence 88755 6889999887642 234567888888888999999999999998765333222 1244555
Q ss_pred HHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703 257 ALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 336 (365)
...+ .+.|+.++|.++++++-. . |+..+|..++..+...|+++.|...++++++..|++...+..+++++.
T Consensus 469 i~~l-~r~G~~~eA~~~~~~~~~-~-------p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 469 IELL-GREGLLDEAYAMIRRAPF-K-------PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHHH-HhcCCHHHHHHHHHHCCC-C-------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 5555 488999999998876532 2 778889999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHhcCcC
Q 036703 337 SLDETERARAIFELAIAQPI 356 (365)
Q Consensus 337 ~~g~~~~A~~~~~~a~~~~~ 356 (365)
+.|++++|.++++.+.+..-
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999887654
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.92 E-value=9.5e-22 Score=169.36 Aligned_cols=301 Identities=9% Similarity=-0.033 Sum_probs=239.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-HHHHHHHHHHHhhcc
Q 036703 25 NYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-SAWINFADFEMKMGE 102 (365)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~ 102 (365)
.-|.+....|+++.|.+.+.++.+..|+ ...+...+......|+++.|...+.++.+..|++. .+....+.++...|+
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 3455666789999999999999999998 45667778999999999999999999999999765 567778999999999
Q ss_pred hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh-H-HHHHHHHHHHHHcCC
Q 036703 103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA-E-DLYRKFLAFEKQYGD 180 (365)
Q Consensus 103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~-~~~~~~~~~~~~~~~ 180 (365)
++.|...++++++. .|++ +.++..++.++. ..|++++|.+.+.+..+....+.. . .+......-....+.
T Consensus 169 ~~~Al~~l~~l~~~-~P~~----~~~l~ll~~~~~---~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 169 LHAARHGVDKLLEM-APRH----KEVLKLAEEAYI---RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9998 899999999999 999999999999999986433211 1 111111100011111
Q ss_pred chhhhHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHH
Q 036703 181 REGIEDAIAGKMRLQYEDGVRKNP----MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINY 256 (365)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~l~~~p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 256 (365)
.+.+...+.++....| +++.++..++..+...|+.++|.+.++++++..|++.... ...+..+
T Consensus 241 --------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-----~~~l~~~ 307 (409)
T TIGR00540 241 --------ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-----LPLCLPI 307 (409)
T ss_pred --------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-----hHHHHHh
Confidence 1124456777777777 5899999999999999999999999999999999985311 0122222
Q ss_pred HHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHH--HHHhhCcchHHHHHHHHHH
Q 036703 257 ALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYE--KYLEWSPENCYAWSKYTEL 334 (365)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~ 334 (365)
.. ...++.+.+++.++++++..|++ |+..+...+|.++.+.|++++|++.|+ ++++..|++.. +..++.+
T Consensus 308 ~~---l~~~~~~~~~~~~e~~lk~~p~~----~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~l 379 (409)
T TIGR00540 308 PR---LKPEDNEKLEKLIEKQAKNVDDK----PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADA 379 (409)
T ss_pred hh---cCCCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHH
Confidence 22 35688899999999999998543 222788899999999999999999999 57788997666 5599999
Q ss_pred HhhccchhHHHHHHHHHhcC
Q 036703 335 EKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 335 ~~~~g~~~~A~~~~~~a~~~ 354 (365)
+...|+.++|.++|++++..
T Consensus 380 l~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998654
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.92 E-value=1.8e-21 Score=167.63 Aligned_cols=293 Identities=11% Similarity=0.013 Sum_probs=237.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh--HHHHHHHHHHHHhccHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH--EGWLSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
+++.|.+.+.++.+..|+....+...|......|+++.|...+.++.+..|+. .+...++.+....|+++.|...+++
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~ 178 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDK 178 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 57889999999999999988888888999999999999999999999999984 4566679999999999999999999
Q ss_pred HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
+++..|+++.++..++.++...|++++|.+.+.+..+. ...+......+-.....-.. ..+..+++...+.++.+.
T Consensus 179 l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~~l---~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 179 LLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFDDEEFADLEQKAEIGLL---DEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH---HHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 54431111122222222223 344555566788888877
Q ss_pred CCCc--hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHH
Q 036703 159 IPKG--RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW--FDYIRLEERVGNQERVREVYERAI 234 (365)
Q Consensus 159 ~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~ 234 (365)
.|.. ....++..++..+...|+.+ .|...++++++..|++.... ..........++.+.+.+.+++++
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~--------~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHD--------SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChH--------HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 7742 23789999999999999866 79999999999999997532 111122234588899999999999
Q ss_pred hcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH--HHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHH
Q 036703 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR--TLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK 312 (365)
Q Consensus 235 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 312 (365)
+..|+++. +.+...+|.++ ...|++++|++.|+ .+++.. |++..+..++.++.+.|+.++|.+
T Consensus 327 k~~p~~~~-------~~ll~sLg~l~-~~~~~~~~A~~~le~a~a~~~~-------p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 327 KNVDDKPK-------CCINRALGQLL-MKHGEFIEAADAFKNVAACKEQ-------LDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred HhCCCChh-------HHHHHHHHHHH-HHcccHHHHHHHHHHhHHhhcC-------CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999972 13667788887 69999999999999 576776 777777899999999999999999
Q ss_pred HHHHHHhh
Q 036703 313 LYEKYLEW 320 (365)
Q Consensus 313 ~~~~al~~ 320 (365)
+|++++..
T Consensus 392 ~~~~~l~~ 399 (409)
T TIGR00540 392 MRQDSLGL 399 (409)
T ss_pred HHHHHHHH
Confidence 99998764
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-21 Score=160.78 Aligned_cols=328 Identities=12% Similarity=0.062 Sum_probs=269.5
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--------C----------hhHHHHHHHHH---------HhhCCC-
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG--------N----------VAGARQIFERW---------MHWMPD- 52 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g--------~----------~~~A~~~~~~a---------l~~~p~- 52 (365)
|+++|+..|..|+..++.+.++...+.......- . .+.-+..|+-- +..+|+
T Consensus 156 n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 156 NREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred cHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 5788999999999999998888777765544322 1 01111122210 001221
Q ss_pred --------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhh
Q 036703 53 --------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE 124 (365)
Q Consensus 53 --------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 124 (365)
.++....++.+...+++.+-.++.+..++.+|-+...+....-++...|+..+-..+-.+.++. .|+.
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~--- 311 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSK--- 311 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCC---
Confidence 3455667777888899999999999999999988877766666888899988888888889999 8888
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC
Q 036703 125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP 204 (365)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p 204 (365)
+-.|+..|.+|. ..|++++|+++|.++...+|.- ...|..++......|.-+ +|+..|..|-+..|
T Consensus 312 -a~sW~aVg~YYl---~i~k~seARry~SKat~lD~~f--gpaWl~fghsfa~e~Ehd--------QAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 312 -ALSWFAVGCYYL---MIGKYSEARRYFSKATTLDPTF--GPAWLAFGHSFAGEGEHD--------QAMAAYFTAARLMP 377 (611)
T ss_pred -CcchhhHHHHHH---HhcCcHHHHHHHHHHhhcCccc--cHHHHHHhHHhhhcchHH--------HHHHHHHHHHHhcc
Confidence 999999999999 9999999999999999998875 789999998887777644 79999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccC
Q 036703 205 MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSF 284 (365)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 284 (365)
....-.+.+|.-+...++...|.+.|..|+.++|.++- +....|.+. ...+.+.+|...|+.++..-++.
T Consensus 378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl---------v~~Elgvva-y~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL---------VLHELGVVA-YTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch---------hhhhhhhee-ehHhhhHHHHHHHHHHHHHhhhc
Confidence 99888888888899999999999999999999999962 444455553 57889999999999999542221
Q ss_pred C---CcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 285 S---PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 285 ~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
. ..| ..++.++|..+.+++.+++|+..|++++.+.|.++.++...|-++...|+++.|++.|-+++.+.|.+
T Consensus 448 ~~e~~~w--~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 448 LNEKIFW--EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred cccccch--hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 1 113 55789999999999999999999999999999999999999999999999999999999999999965
No 41
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.92 E-value=3.5e-22 Score=184.15 Aligned_cols=315 Identities=15% Similarity=0.109 Sum_probs=207.9
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC------------------------------
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP------------------------------ 51 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------------------------------ 51 (365)
++.|+.+|++... |+ ...|..+...+.+.|++++|..+|+++++..+
T Consensus 174 ~~~A~~lf~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 174 LIDARRLFDEMPE--RN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred HHHHHHHHhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3445555554432 32 44556666666666666666666665543221
Q ss_pred -------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhh
Q 036703 52 -------DHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE 124 (365)
Q Consensus 52 -------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 124 (365)
+..++..++..|.+.|++++|..+|+++. +.+..+|..++..|.+.|+.++|.++|+++.+.+...+
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd--- 324 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID--- 324 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---
Confidence 11223344555555566666666665442 23555666666666666666666666666655422223
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC
Q 036703 125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP 204 (365)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p 204 (365)
...+..+...+. +.|.+++|..++..+++..... ...++..++..+.+.|+.+ .|..+|+++.+
T Consensus 325 -~~t~~~ll~a~~---~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~--------~A~~vf~~m~~--- 388 (697)
T PLN03081 325 -QFTFSIMIRIFS---RLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRME--------DARNVFDRMPR--- 388 (697)
T ss_pred -HHHHHHHHHHHH---hccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHH--------HHHHHHHhCCC---
Confidence 455666666666 6666666666666666543211 1345666666666667644 68888887653
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703 205 MNYDTWFDYIRLEERVGNQERVREVYERAIAN--VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF 282 (365)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 282 (365)
.+...|..++..+...|+.++|.++|+++.+. .|+.. .+..+...+ ...|..++|..+|+.+.+...
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~----------T~~~ll~a~-~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV----------TFLAVLSAC-RYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH----------HHHHHHHHH-hcCCcHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999988765 44432 344445554 488999999999999876432
Q ss_pred cCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 283 SFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
-. |+...|..+++++.+.|++++|.++++++ ...| +..+|..+...+...|+.+.|..+++++++..|.+
T Consensus 458 ~~----p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 458 IK----PRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred CC----CCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 22 66778899999999999999999999875 3345 56789999999999999999999999999988843
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.7e-22 Score=163.30 Aligned_cols=289 Identities=13% Similarity=0.090 Sum_probs=244.6
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703 18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF 96 (365)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 96 (365)
+++++....++.+...+++.+..++++..++.+|- .......+.++...|+..+--.+=.+++..+|+.+..|+..|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45788888999999999999999999999999998 44444445577888887777777788999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703 97 EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 176 (365)
|...|++.+|+++|.++... .|.- ...|+.+|..+. ..|+-++|...|.+|-+..|....+.++...-. .
T Consensus 322 Yl~i~k~seARry~SKat~l-D~~f----gpaWl~fghsfa---~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey--~ 391 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTL-DPTF----GPAWLAFGHSFA---GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEY--M 391 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhc-Cccc----cHHHHHHhHHhh---hcchHHHHHHHHHHHHHhccCCcchHHHHHHHH--H
Confidence 99999999999999999999 7776 999999999999 999999999999999999988754555544422 2
Q ss_pred HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHH
Q 036703 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINY 256 (365)
Q Consensus 177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 256 (365)
..++ .+.|...|.+++.++|+++-+...+|.+....+.+.+|..+|+.++...+....... .+..++.++
T Consensus 392 ~t~n--------~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--~w~p~~~NL 461 (611)
T KOG1173|consen 392 RTNN--------LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--FWEPTLNNL 461 (611)
T ss_pred Hhcc--------HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--chhHHHHhH
Confidence 3444 337999999999999999999999999999999999999999999965444322111 234588999
Q ss_pred HHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHH
Q 036703 257 ALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTEL 334 (365)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 334 (365)
|..+ ...+.+++|+..|++++... |. ...+...|-++...|+++.|...|.+++-+.|++..+-..+...
T Consensus 462 GH~~-Rkl~~~~eAI~~~q~aL~l~-------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 462 GHAY-RKLNKYEEAIDYYQKALLLS-------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHH-HHHhhHHHHHHHHHHHHHcC-------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9998 69999999999999999998 44 77889999999999999999999999999999986655544433
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.91 E-value=1.2e-20 Score=161.76 Aligned_cols=296 Identities=9% Similarity=0.052 Sum_probs=231.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhCCChHH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-HHHHHHHHHHHhhcch
Q 036703 26 YIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-SAWINFADFEMKMGEV 103 (365)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~ 103 (365)
-|......|++++|.+...++-+..+.+.+ +...+......|+++.|...|.++.+.+|++. ......+.++...|++
T Consensus 90 ~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 90 QALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCH
Confidence 344555679999999888887766555444 34445666899999999999999999999764 3344558999999999
Q ss_pred HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh--H----HHHHHHHHHHHH
Q 036703 104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA--E----DLYRKFLAFEKQ 177 (365)
Q Consensus 104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~----~~~~~~~~~~~~ 177 (365)
+.|...++++.+. .|++ +.+...++.++. ..|++++|.+++.+..+..+.+.. . ..+..+......
T Consensus 170 ~~Al~~l~~~~~~-~P~~----~~al~ll~~~~~---~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 170 HAARHGVDKLLEV-APRH----PEVLRLAEQAYI---RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHHHHHHHHhc-CCCC----HHHHHHHHHHHH---HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9998 999999999999 999999999999998876554321 1 111111111111
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703 178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA 257 (365)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 257 (365)
..+. +......+..-...|+++.+...++..+...|+.++|...++++++..| ++. +...++
T Consensus 242 ~~~~--------~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~---------l~~l~~ 303 (398)
T PRK10747 242 DQGS--------EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER---------LVLLIP 303 (398)
T ss_pred hcCH--------HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH---------HHHHHh
Confidence 1111 1233334444345577999999999999999999999999999999544 432 444555
Q ss_pred HHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703 258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 336 (365)
.+ ..++.++++...++.++.+ |+ +.+...+|.++...|++++|++.|+++++..|++.. +..++.++.
T Consensus 304 ~l---~~~~~~~al~~~e~~lk~~-------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~ 372 (398)
T PRK10747 304 RL---KTNNPEQLEKVLRQQIKQH-------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALD 372 (398)
T ss_pred hc---cCCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHH
Confidence 44 4589999999999999998 55 778899999999999999999999999999996544 668999999
Q ss_pred hccchhHHHHHHHHHhcCcCCC
Q 036703 337 SLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 337 ~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
..|+.++|..+|++++.+...+
T Consensus 373 ~~g~~~~A~~~~~~~l~~~~~~ 394 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLTLQN 394 (398)
T ss_pred HcCCHHHHHHHHHHHHhhhccc
Confidence 9999999999999999876433
No 44
>PLN03077 Protein ECB2; Provisional
Probab=99.91 E-value=4.6e-21 Score=180.86 Aligned_cols=324 Identities=10% Similarity=0.031 Sum_probs=227.7
Q ss_pred ChhhHHHHHHHHHHh--CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC--ChHHHHHHHHHHHHhccHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTL--SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEGWLSYIKFKLRYNEVQRARHIF 76 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~A~~~~ 76 (365)
++++|..+|++..+. .|+ ...+..+...+.+.|+++.|.++++.+.+... +..++..+++.|.+.|++++|.++|
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 357788888877654 365 45566666677777888888888877776543 3567777777777888888888877
Q ss_pred HHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH-------------------------------
Q 036703 77 ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA------------------------------- 125 (365)
Q Consensus 77 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------------------------- 125 (365)
+++.+ | +...|..+...+.+.|+.++|+.+|+++... .+.+....
T Consensus 448 ~~m~~--~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 448 HNIPE--K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HhCCC--C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 76532 2 5567777777777777777777777777655 43330000
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--C
Q 036703 126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--N 203 (365)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~ 203 (365)
..+...+...|. +.|++++|..+|+.. .|+ ...|..++..+...|..+ +|..+|+++.+. .
T Consensus 524 ~~~~naLi~~y~---k~G~~~~A~~~f~~~---~~d---~~s~n~lI~~~~~~G~~~--------~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 524 GFLPNALLDLYV---RCGRMNYAWNQFNSH---EKD---VVSWNILLTGYVAHGKGS--------MAVELFNRMVESGVN 586 (857)
T ss_pred ceechHHHHHHH---HcCCHHHHHHHHHhc---CCC---hhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCC
Confidence 122234455666 777888888777765 222 457777777777777754 688888887763 3
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc
Q 036703 204 PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS 283 (365)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 283 (365)
|+ ...+..+...+...|.+++|..+|+.+.+..+-.+. +..+..+...+ .+.|+.++|.++++++- ..
T Consensus 587 Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-------~~~y~~lv~~l-~r~G~~~eA~~~~~~m~-~~-- 654 (857)
T PLN03077 587 PD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-------LKHYACVVDLL-GRAGKLTEAYNFINKMP-IT-- 654 (857)
T ss_pred CC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-------hHHHHHHHHHH-HhCCCHHHHHHHHHHCC-CC--
Confidence 43 355666677777888888888888887754333222 22455555555 47788888888888762 22
Q ss_pred CCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCccc
Q 036703 284 FSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFL 363 (365)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~~ 363 (365)
|+..+|..+...+...|+.+.|....++++++.|++...+..++++|...|++++|.++.+.+.+..-.-.|..-
T Consensus 655 -----pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 655 -----PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 778888888888888889999999999999999999999999999999999999999998888776654445433
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=8.7e-21 Score=148.35 Aligned_cols=324 Identities=11% Similarity=0.033 Sum_probs=263.0
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA 94 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 94 (365)
+|.+..-.+.+|.-++..|++..|+..|..|++.+|+ -.+.+..+..|...|.-..|+.-+.+.++..|+-..+.+..|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 4556666788888888899999999999999999998 577788888888889888899999999999998888888889
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH------------HHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV------------AFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.++.++|++++|..-|...++. .|++ .....+.. .....+. ..|+...|+......++..|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~-~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~---~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQH-EPSN-GLVLEAQSKLALIQEHWVLVQQLKSAS---GSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhc-CCCc-chhHHHHHHHHhHHHHHHHHHHHHHHh---cCCchhhHHHHHHHHHhcCcch
Confidence 9999999999999999999988 7765 11122222 2223334 6799999999999999999987
Q ss_pred hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
+.++..-+..+...|.+. +|+.-+..+-++..++.+.++.++.++...|+.+.+....+++++.+|++..
T Consensus 189 --a~l~~~Rakc~i~~~e~k--------~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 189 --ASLRQARAKCYIAEGEPK--------KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred --hHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 678888888888888865 7999999999999999999999999999999999999999999999999864
Q ss_pred hhH-HHH---hHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHH
Q 036703 243 KRY-WQR---YIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL 318 (365)
Q Consensus 243 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 318 (365)
... |.. .+...- -+.-. ...+++.++++..++.++..|+...+- ...+..+..++...|++.+|+....+++
T Consensus 259 Cf~~YKklkKv~K~le-s~e~~-ie~~~~t~cle~ge~vlk~ep~~~~ir--~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLE-SAEQA-IEEKHWTECLEAGEKVLKNEPEETMIR--YNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHHHHHHHHHH-HHHHH-HhhhhHHHHHHHHHHHHhcCCccccee--eeeeheeeecccccCCHHHHHHHHHHHH
Confidence 211 111 111111 11111 356889999999999999986643221 3455666778888999999999999999
Q ss_pred hhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 319 EWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 319 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
+.+|++++++...+..++....++.|+.-|++|.+.++.+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999998854
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=4.5e-20 Score=168.12 Aligned_cols=326 Identities=10% Similarity=0.037 Sum_probs=235.7
Q ss_pred HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703 14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN 92 (365)
Q Consensus 14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 92 (365)
-..|+.+...+.-+.+..+.|+++.|+..|+++++.+|.. .....++.++...|+.++|+..+++++...|........
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 3478889999999999999999999999999999999993 333388888889999999999999999444445555555
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL 172 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 172 (365)
+|.++...|++++|+++|+++++. .|++ +.++..++..+. ..++.++|+..++++.+..|... .+...+
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~-dP~n----~~~l~gLa~~y~---~~~q~~eAl~~l~~l~~~dp~~~---~~l~la 176 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKK-DPTN----PDLISGMIMTQA---DAGRGGVVLKQATELAERDPTVQ---NYMTLS 176 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CCCC----HHHHHHHHHHHh---hcCCHHHHHHHHHHhcccCcchH---HHHHHH
Confidence 688999999999999999999999 9998 899999999999 99999999999999999999852 234444
Q ss_pred HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHH---------------------------
Q 036703 173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQER--------------------------- 225 (365)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~--------------------------- 225 (365)
.++...+... +|+..|+++++.+|++.+++..+...+...|-...
T Consensus 177 yL~~~~~~~~--------~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 177 YLNRATDRNY--------DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAE 248 (822)
T ss_pred HHHHhcchHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence 4443333322 47778888888888777666555544443332222
Q ss_pred ---------------------HHHHHHHHHhc---CCCchhh-------hH---------------HHH--------hHH
Q 036703 226 ---------------------VREVYERAIAN---VPPAEEK-------RY---------------WQR--------YIY 251 (365)
Q Consensus 226 ---------------------A~~~~~~~~~~---~p~~~~~-------~~---------------~~~--------~~~ 251 (365)
|..-++..+.. .|..... .+ +.. -..
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 22222333331 2211000 00 000 001
Q ss_pred HHHHHHHHH---------------------------------------hhccCChhHHHHHHHHHHhccccCC-------
Q 036703 252 LWINYALYK---------------------------------------EVDAGDLERTRDVYRTLFIFYFSFS------- 285 (365)
Q Consensus 252 ~~~~~~~~~---------------------------------------~~~~~~~~~a~~~~~~a~~~~~~~~------- 285 (365)
+....|..| .+..+++++|..++++..+..|...
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 111112222 0355667777777777666433100
Q ss_pred Cc-chh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 286 PR-MEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 286 ~~-~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
.. -|+ .+.....+..+.-.|++.+|.+.+++.+...|.|+.+++.++.++...|.+.+|...++.+....|.+
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 00 033 56677778888899999999999999999999999999999999999999999999999999988843
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=5.2e-20 Score=160.64 Aligned_cols=317 Identities=13% Similarity=0.133 Sum_probs=240.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
.....+.|......|+++.|..++..+++.+|. ..+|..+|.++..+|+.+++....-.|-..+|.+.+.|..+++...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455677788888899999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh---HHHHHHHHHHH
Q 036703 99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA---EDLYRKFLAFE 175 (365)
Q Consensus 99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~~~~ 175 (365)
++|++.+|+-+|.+|++. .|.+ .......+.++. +.|+...|.+.|.+++..+|..+. ...-...+...
T Consensus 219 ~~~~i~qA~~cy~rAI~~-~p~n----~~~~~ers~L~~---~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQA-NPSN----WELIYERSSLYQ---KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred hcccHHHHHHHHHHHHhc-CCcc----hHHHHHHHHHHH---HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999 9998 999999999999 999999999999999999995421 11222223333
Q ss_pred HHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCchhh--hHHH--
Q 036703 176 KQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEERVGNQERVREVYERAIAN--VPPAEEK--RYWQ-- 247 (365)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~--~~~~-- 247 (365)
...++. +.|...++.++.. ..-..+-+..++.++.....++.|.......... .+++.+- .-.+
T Consensus 291 ~~~~~~--------e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 291 ITHNER--------ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHhhHH--------HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 333332 3688888888873 2223456778888888888899888777665541 1111100 0000
Q ss_pred -------------HhHHH-HHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHH
Q 036703 248 -------------RYIYL-WINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKL 313 (365)
Q Consensus 248 -------------~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 313 (365)
-.+.+ .+..+.+ ..+..+....+............ ..++++..++..+...|++.+|+.+
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~---~L~~~e~~e~ll~~l~~~n~~~~---d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLV---HLKERELLEALLHFLVEDNVWVS---DDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhh---cccccchHHHHHHHHHHhcCChh---hhHHHHHHHHHHHHhcccHHHHHHH
Confidence 00112 2222222 33333333333333333221100 2388999999999999999999999
Q ss_pred HHHHHhhCcc-hHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 314 YEKYLEWSPE-NCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 314 ~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
|..+....+. +..+|..+|.+++..|.+++|...|++++...|.+
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 9999988653 56799999999999999999999999999999954
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.90 E-value=8.3e-20 Score=156.54 Aligned_cols=286 Identities=12% Similarity=0.119 Sum_probs=223.5
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCChhHHHHHHHHHHhhCCChH--HHHHHHHHHHHhccHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWN-NYIRMEENLGNVAGARQIFERWMHWMPDHE--GWLSYIKFKLRYNEVQRARHIFE 77 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~A~~~~~ 77 (365)
|++.|++...+.-...+. +.+.. ..+....+.|+++.|...++++.+..|+.. .....+.++...|+++.|...++
T Consensus 99 d~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 99 DYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVD 177 (398)
T ss_pred CHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 466777766665554333 44444 446666999999999999999999999942 33355889999999999999999
Q ss_pred HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH----HHHHHHHHHHHhccccchhHHHHHHHH
Q 036703 78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE----QLFVAFAKFEEMGCNCKETDRARCIYK 153 (365)
Q Consensus 78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~ 153 (365)
++.+..|+++.+...++.++.+.|++++|.+++.+..+. .+.+..... .++..+..... ...+.+...++.+
T Consensus 178 ~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~---~~~~~~~l~~~w~ 253 (398)
T PRK10747 178 KLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAM---ADQGSEGLKRWWK 253 (398)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999988 655411111 12333222222 3333344444444
Q ss_pred HHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703 154 FALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERA 233 (365)
Q Consensus 154 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 233 (365)
..-+..|++ ..+...++......|+.+ +|...++++++. |.++.+...++.+ ..++.+++.+..++.
T Consensus 254 ~lp~~~~~~--~~~~~~~A~~l~~~g~~~--------~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~ 320 (398)
T PRK10747 254 NQSRKTRHQ--VALQVAMAEHLIECDDHD--------TAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQ 320 (398)
T ss_pred hCCHHHhCC--HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHH
Confidence 443344433 678899999999999866 689999999994 5566666666665 459999999999999
Q ss_pred HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHH
Q 036703 234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKL 313 (365)
Q Consensus 234 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 313 (365)
++..|+++. +.+.+|.++ ...+++++|++.|+++++.. |+...+..++.++.+.|+.++|..+
T Consensus 321 lk~~P~~~~---------l~l~lgrl~-~~~~~~~~A~~~le~al~~~-------P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 321 IKQHGDTPL---------LWSTLGQLL-MKHGEWQEASLAFRAALKQR-------PDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred HhhCCCCHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999964 777888887 69999999999999999998 7777778999999999999999999
Q ss_pred HHHHHhhC
Q 036703 314 YEKYLEWS 321 (365)
Q Consensus 314 ~~~al~~~ 321 (365)
|++++.+.
T Consensus 384 ~~~~l~~~ 391 (398)
T PRK10747 384 RRDGLMLT 391 (398)
T ss_pred HHHHHhhh
Confidence 99998763
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=3.8e-20 Score=144.80 Aligned_cols=301 Identities=17% Similarity=0.088 Sum_probs=249.3
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++..|...|..+++.+|++..+++..|..|+..|+...|+.-+.+.+++.|+ ..+....+.++.++|.+++|..-|...
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~v 132 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQV 132 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999 678889999999999999999999999
Q ss_pred HHhCCcch---HHHHHHH------------HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703 80 VQCHPYNL---SAWINFA------------DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 80 l~~~p~~~---~~~~~~~------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
++.+|++. ++...++ ..+...|+...|+......++. .|-+ ..++...+.+|. ..|+
T Consensus 133 l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wd----a~l~~~Rakc~i---~~~e 204 (504)
T KOG0624|consen 133 LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWD----ASLRQARAKCYI---AEGE 204 (504)
T ss_pred HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccch----hHHHHHHHHHHH---hcCc
Confidence 99999532 2222222 2344568999999999999999 9988 999999999999 9999
Q ss_pred hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----------
Q 036703 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY----------- 213 (365)
Q Consensus 145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~----------- 213 (365)
+..|+.-++.+-+...++ .+..+....++...|+.. .+....+.+|+.+|++...+-.+
T Consensus 205 ~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~--------~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAE--------NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHH--------HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999988876665 678888888888888855 58888899999999986543222
Q ss_pred -HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-H
Q 036703 214 -IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-R 291 (365)
Q Consensus 214 -~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~ 291 (365)
+.-....++|.++.+..++.++..|...... +........++ ..-+.+.+|+....+++... |+ .
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir-----~~~~r~~c~C~-~~d~~~~eAiqqC~evL~~d-------~~dv 341 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIR-----YNGFRVLCTCY-REDEQFGEAIQQCKEVLDID-------PDDV 341 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCccccee-----eeeeheeeecc-cccCCHHHHHHHHHHHHhcC-------chHH
Confidence 1223557899999999999999999854321 11222234444 46789999999999999998 55 8
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHH
Q 036703 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYT 332 (365)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 332 (365)
+++..-++.++...+++.|+.-|++|++.+|+|..+...+-
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLE 382 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 88899999999999999999999999999999877665543
No 50
>PLN03077 Protein ECB2; Provisional
Probab=99.89 E-value=4.1e-20 Score=174.45 Aligned_cols=314 Identities=11% Similarity=0.064 Sum_probs=253.9
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
+++.|+.+|++.. .| +...|..++..+.+.|++++|..+|+++.+. .|+..++..+...+.+.|+.+.|.+++..
T Consensus 338 ~~~~A~~vf~~m~--~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 338 SWGEAEKVFSRME--TK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred CHHHHHHHHhhCC--CC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 4678999999864 34 4678999999999999999999999998764 47777888888899999999999999999
Q ss_pred HHHhCC-cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 79 LVQCHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 79 ~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
+++... .+..++..+...|.+.|++++|.++|+++.+. + ...|..++..+. ..|+.++|+.+|++++.
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d----~vs~~~mi~~~~---~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----D----VISWTSIIAGLR---LNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----C----eeeHHHHHHHHH---HCCCHHHHHHHHHHHHh
Confidence 998643 36788999999999999999999999986543 2 568999999999 99999999999999886
Q ss_pred cCCCchhHHHHH-----------------------------------HHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 158 RIPKGRAEDLYR-----------------------------------KFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 158 ~~p~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
..+.+ ...+. .++..+.+.|+. +.|...|+..
T Consensus 484 ~~~pd--~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~--------~~A~~~f~~~--- 550 (857)
T PLN03077 484 TLKPN--SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM--------NYAWNQFNSH--- 550 (857)
T ss_pred CCCCC--HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH--------HHHHHHHHhc---
Confidence 43332 11222 233444455543 3677777775
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIAN--VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
+.+...|..++..+...|+.++|..+|+++.+. .|+.. .+..+...+ .+.|.+++|..+|+.+.+.
T Consensus 551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~----------T~~~ll~a~-~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV----------TFISLLCAC-SRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc----------cHHHHHHHH-hhcChHHHHHHHHHHHHHH
Confidence 567889999999999999999999999998875 45542 233333344 4889999999999999854
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703 281 YFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDL 359 (365)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 359 (365)
.+-. |+...|..+++++.+.|++++|.++++++ ...| +..+|..+...+...|+.+.+....++++++.|.+.
T Consensus 619 ~gi~----P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 619 YSIT----PNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred hCCC----CchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 3222 77889999999999999999999999986 3566 688999999999999999999999999999999543
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.7e-20 Score=147.61 Aligned_cols=295 Identities=13% Similarity=0.058 Sum_probs=200.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL 87 (365)
Q Consensus 9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 87 (365)
+-.-....|+|..+...+|.++...|+.++|+-.|+++..++|. ....-.|+.++...|++++-..+-...+.......
T Consensus 221 ~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta 300 (564)
T KOG1174|consen 221 MLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA 300 (564)
T ss_pred HHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch
Confidence 33444556777777777777777777777777777777777777 55555666666677777777777777777665566
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHH
Q 036703 88 SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL 167 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 167 (365)
.-|+--+......+++..|+.+-+++++. .|.+ ...++..|..+. ..|+.++|.-.|+.++...|.. .+.
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~-~~r~----~~alilKG~lL~---~~~R~~~A~IaFR~Aq~Lap~r--L~~ 370 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDS-EPRN----HEALILKGRLLI---ALERHTQAVIAFRTAQMLAPYR--LEI 370 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhcc-Cccc----chHHHhccHHHH---hccchHHHHHHHHHHHhcchhh--HHH
Confidence 66777777777777777777777777777 6666 677777777777 7777777777777777776654 566
Q ss_pred HHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH-HH-HHHhCCHHHHHHHHHHHHhcCCCchhhhH
Q 036703 168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYI-RL-EERVGNQERVREVYERAIANVPPAEEKRY 245 (365)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~-~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 245 (365)
|..++..+...|... +|.-.-+.+++..|.+...+..+| .+ .....--++|.++++++++..|.-
T Consensus 371 Y~GL~hsYLA~~~~k--------EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y----- 437 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFK--------EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY----- 437 (564)
T ss_pred HHHHHHHHHhhchHH--------HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-----
Confidence 777777666666543 455666666666677776666665 32 233344566777777777777764
Q ss_pred HHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchH
Q 036703 246 WQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENC 325 (365)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 325 (365)
+......+.+. ...|.+..++.++++.+... |+..+...+|++....+.+.+|.+.|..|+.++|++-
T Consensus 438 ----~~AV~~~AEL~-~~Eg~~~D~i~LLe~~L~~~-------~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 438 ----TPAVNLIAELC-QVEGPTKDIIKLLEKHLIIF-------PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred ----HHHHHHHHHHH-HhhCccchHHHHHHHHHhhc-------cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 33555556654 45677777777777777766 6666777777777777777777777777777777776
Q ss_pred HHHHHHHHHHhhc
Q 036703 326 YAWSKYTELEKSL 338 (365)
Q Consensus 326 ~~~~~~~~~~~~~ 338 (365)
.....+-.++...
T Consensus 506 ~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 506 RTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHHHhcc
Confidence 6666655555443
No 52
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.89 E-value=4.6e-20 Score=167.15 Aligned_cols=251 Identities=24% Similarity=0.399 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh-hCCC-----hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703 5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH-WMPD-----HEGWLSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
..+-|++.+..+|++.-.|+.|..+.++.++.++|++++++||. +++. ..+|..+.+++...|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999995 5554 46999999999999999999999999
Q ss_pred HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
|.+.+. ...++..+..+|...+.+++|.++|+.+++. +... ..+|..++.++. ++++-+.|+.++++|++.
T Consensus 1523 Acqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~----~~vW~~y~~fLl---~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1523 ACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQT----RKVWIMYADFLL---RQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcch----hhHHHHHHHHHh---cccHHHHHHHHHHHHHhh
Confidence 999876 6889999999999999999999999999999 8765 999999999999 999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703 159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP 238 (365)
Q Consensus 159 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 238 (365)
.|...+..+...+++++.++|+.+ +++.+|+-.+...|.-.++|..|++.....|+.+.++.+|++++...-
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDae--------RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAE--------RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCch--------hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 999878999999999999999987 699999999999999999999999999999999999999999998743
Q ss_pred C-chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 239 P-AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
. ..... ++..|..++ ...|+-..+..+=.+|.+.
T Consensus 1666 ~~kkmKf-------ffKkwLeyE-k~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1666 SIKKMKF-------FFKKWLEYE-KSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred ChhHhHH-------HHHHHHHHH-HhcCchhhHHHHHHHHHHH
Confidence 3 33322 445555554 5778877776666666654
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=2.6e-20 Score=166.31 Aligned_cols=234 Identities=10% Similarity=-0.067 Sum_probs=164.1
Q ss_pred hCCCchHHHHHHH--HHHH---hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh---------ccHHHHHHHHHHH
Q 036703 15 LSPRVDQLWNNYI--RMEE---NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY---------NEVQRARHIFERL 79 (365)
Q Consensus 15 ~~p~~~~~~~~~~--~~~~---~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~---------~~~~~A~~~~~~~ 79 (365)
..|.+.++|..+. .... ..++.++|+..|+++++.+|+ ...|..++.++... +++++|...++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 4555555544432 2222 234678888888888888888 66777777665432 3478888888888
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
++.+|+++.++..+|.++...|++++|+..|+++++. .|++ +.++..+|.++. ..|++++|+..++++++..
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~P~~----~~a~~~lg~~l~---~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-SPIS----ADIKYYYGWNLF---MAGQLEEALQTINECLKLD 402 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888 8887 888888888888 8888888888888888888
Q ss_pred CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703 160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN-PMNYDTWFDYIRLEERVGNQERVREVYERAIANVP 238 (365)
Q Consensus 160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 238 (365)
|.+.. .+...+......|+.+ +|+..+++++... |+++..+..++.++...|++++|+..+.+.....|
T Consensus 403 P~~~~--~~~~~~~~~~~~g~~e--------eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 403 PTRAA--AGITKLWITYYHTGID--------DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred CCChh--hHHHHHHHHHhccCHH--------HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 87532 2222222333455543 5888888888764 67777888888888888888888888888777666
Q ss_pred CchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 036703 239 PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF 278 (365)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~ 278 (365)
.+.. .+..++..+ ...| ++|...+++.+
T Consensus 473 ~~~~---------~~~~l~~~~-~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 473 TGLI---------AVNLLYAEY-CQNS--ERALPTIREFL 500 (553)
T ss_pred hhHH---------HHHHHHHHH-hccH--HHHHHHHHHHH
Confidence 6432 344444443 2444 35555555444
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=4.8e-21 Score=148.82 Aligned_cols=260 Identities=13% Similarity=0.130 Sum_probs=162.1
Q ss_pred HhcCChhHHHHHHHHHHhh---CCC------hHH-H-HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 31 ENLGNVAGARQIFERWMHW---MPD------HEG-W-LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 31 ~~~g~~~~A~~~~~~al~~---~p~------~~~-~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
....++..|.......++. .|+ .+. | ..++++|.+.|-+.+|...++.++...| .++.+..++.+|.+
T Consensus 190 yhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~r 268 (478)
T KOG1129|consen 190 YHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQR 268 (478)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHH
Confidence 3445666666555444432 122 222 3 3467888888888888888888888888 88888888888888
Q ss_pred hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703 100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 179 (365)
..+...|+.+|...++. +|.+ .......+.++. ..+++++|.++|+.+++..|.+.. .....+.-+.-.+
T Consensus 269 idQP~~AL~~~~~gld~-fP~~----VT~l~g~ARi~e---am~~~~~a~~lYk~vlk~~~~nvE--aiAcia~~yfY~~ 338 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDS-FPFD----VTYLLGQARIHE---AMEQQEDALQLYKLVLKLHPINVE--AIACIAVGYFYDN 338 (478)
T ss_pred hccHHHHHHHHhhhhhc-CCch----hhhhhhhHHHHH---HHHhHHHHHHHHHHHHhcCCccce--eeeeeeeccccCC
Confidence 88888888888888888 8887 888888888888 888888888888888877776521 1111111111222
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259 (365)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 259 (365)
+++ .|...|++.|++.-.+++++.++|.+....++++-+...|++++........
T Consensus 339 ~PE--------~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~----------------- 393 (478)
T KOG1129|consen 339 NPE--------MALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ----------------- 393 (478)
T ss_pred ChH--------HHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch-----------------
Confidence 222 4566666666666666666666666665566666666666665554322111
Q ss_pred HhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc
Q 036703 260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD 339 (365)
Q Consensus 260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 339 (365)
..++|++++.+....|++..|..+|+-++..+|++...+++++-+..+.|
T Consensus 394 ------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 394 ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG 443 (478)
T ss_pred ------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC
Confidence 13444555554445555555555555555555555555555555555555
Q ss_pred chhHHHHHHHHHhcCcC
Q 036703 340 ETERARAIFELAIAQPI 356 (365)
Q Consensus 340 ~~~~A~~~~~~a~~~~~ 356 (365)
+++.|+.++..+-...|
T Consensus 444 ~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMP 460 (478)
T ss_pred chHHHHHHHHHhhhhCc
Confidence 55555555555555544
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=1e-19 Score=149.60 Aligned_cols=223 Identities=14% Similarity=0.116 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHHhC---CCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLS---PRV-DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFE 77 (365)
Q Consensus 3 ~~A~~~~~~~l~~~---p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~ 77 (365)
+.++..+.+++... |.. +..|..+|.++...|+.++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56778888888643 333 677999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
++++.+|++..+|..+|.++...|++++|++.|+++++. .|++ +.. ..+..+.. ..+++++|+..|++++.
T Consensus 123 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-~P~~----~~~-~~~~~l~~---~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 123 SVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-DPND----PYR-ALWLYLAE---SKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC----HHH-HHHHHHHH---ccCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999 9987 421 11223345 67889999999988775
Q ss_pred cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703 158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANV 237 (365)
Q Consensus 158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 237 (365)
..+.. .|. ........|+.... ...+.+...++...+..|...++|+.+|.++...|++++|+..|+++++.+
T Consensus 194 ~~~~~----~~~-~~~~~~~lg~~~~~--~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KLDKE----QWG-WNIVEFYLGKISEE--TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hCCcc----ccH-HHHHHHHccCCCHH--HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44332 222 12222234443321 012233333444556677788999999999999999999999999999999
Q ss_pred CCch
Q 036703 238 PPAE 241 (365)
Q Consensus 238 p~~~ 241 (365)
|.+.
T Consensus 267 ~~~~ 270 (296)
T PRK11189 267 VYNF 270 (296)
T ss_pred CchH
Confidence 8653
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=5.7e-21 Score=148.39 Aligned_cols=201 Identities=16% Similarity=0.173 Sum_probs=167.8
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 209 (365)
..+|++|. +.|-+.+|.+.++.+++..|. .+-+..+...+.....+. .|..+|...+...|.++..
T Consensus 227 ~Q~gkCyl---rLgm~r~AekqlqssL~q~~~---~dTfllLskvY~ridQP~--------~AL~~~~~gld~fP~~VT~ 292 (478)
T KOG1129|consen 227 QQMGKCYL---RLGMPRRAEKQLQSSLTQFPH---PDTFLLLSKVYQRIDQPE--------RALLVIGEGLDSFPFDVTY 292 (478)
T ss_pred HHHHHHHH---HhcChhhhHHHHHHHhhcCCc---hhHHHHHHHHHHHhccHH--------HHHHHHhhhhhcCCchhhh
Confidence 46788888 999999999999999887776 456666777777766655 6889999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcch
Q 036703 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME 289 (365)
Q Consensus 210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 289 (365)
....+.++...+++++|.++|+.+++..|.+.+ ..-..+.-+ .-.++++-|+.+|.+.++... .
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE---------aiAcia~~y-fY~~~PE~AlryYRRiLqmG~------~ 356 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVE---------AIACIAVGY-FYDNNPEMALRYYRRILQMGA------Q 356 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce---------eeeeeeecc-ccCCChHHHHHHHHHHHHhcC------C
Confidence 999999999999999999999999999998854 222222222 356889999999999999852 3
Q ss_pred hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc---chHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703 290 ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP---ENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
++++|+++|-+++-.++++-+...|++++.... .-.++|.+++.+....||+.-|...|+-++..++ +..+
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~e 430 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGE 430 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHH
Confidence 488999999999999999999999999998743 2568999999999999999999999999999888 4443
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=5.1e-19 Score=158.09 Aligned_cols=251 Identities=10% Similarity=0.002 Sum_probs=204.6
Q ss_pred ccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 67 NEVQRARHIFERLVQCHPYNLSAWINFADFEMKM---------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 67 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
+++++|+..|+++++.+|+++..|..+|.++... +++++|...++++++. .|++ +.++..+|.++.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-dP~~----~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-DHNN----PQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHH
Confidence 5689999999999999999999999999877643 3478999999999999 9998 999999999999
Q ss_pred hccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 036703 138 MGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLE 217 (365)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~ 217 (365)
..|++++|...|+++++.+|++ ...+..++..+...|+.+ +|+..++++++.+|.++..+..++..+
T Consensus 350 ---~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~G~~~--------eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 350 ---IHSEYIVGSLLFKQANLLSPIS--ADIKYYYGWNLFMAGQLE--------EALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred ---HccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 9999999999999999999987 567888888888899866 699999999999999987766666667
Q ss_pred HHhCCHHHHHHHHHHHHhcC-CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHH
Q 036703 218 ERVGNQERVREVYERAIANV-PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFK 295 (365)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~ 295 (365)
...|++++|+..+++++... |.++. .+..++.++ ...|++++|+..+.+..... |. .....
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~---------~~~~la~~l-~~~G~~~eA~~~~~~~~~~~-------~~~~~~~~ 479 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPI---------LLSMQVMFL-SLKGKHELARKLTKEISTQE-------ITGLIAVN 479 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHH---------HHHHHHHHH-HhCCCHHHHHHHHHHhhhcc-------chhHHHHH
Confidence 77899999999999999876 54532 566677776 58999999999999987765 44 44556
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHhhC---cchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 296 KYIEMELCLGNIDPCRKLYEKYLEWS---PENCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 296 ~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
.++..+...|+ +|...+++.++.. |.++.. ...++.-.|+.+.+.-. +++.+.....
T Consensus 480 ~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~~~~ 539 (553)
T PRK12370 480 LLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNEDNIW 539 (553)
T ss_pred HHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccchHh
Confidence 66777777774 8888888876653 333332 67777788888888777 7777665533
No 58
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.87 E-value=3.5e-18 Score=141.39 Aligned_cols=333 Identities=19% Similarity=0.331 Sum_probs=238.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH
Q 036703 10 DRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS 88 (365)
Q Consensus 10 ~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 88 (365)
++-++.+|.+.++|..+.+-+..+ -+++++..|++.+...|. +..|..++..+...++++....+|.+++...- +.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence 567888999999999999988887 899999999999999999 89999999999999999999999999998877 699
Q ss_pred HHHHHHHHHHhh-cch----HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh------ccccchhHHHHHHHHHHhc
Q 036703 89 AWINFADFEMKM-GEV----DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM------GCNCKETDRARCIYKFALD 157 (365)
Q Consensus 89 ~~~~~~~~~~~~-~~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~l~ 157 (365)
+|..+...-.+. |.. +.-.+.|+-++.. .+-+ ..+..+|..++.++.. .+.+.+++..+++|++++.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k-ig~d-i~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEK-IGMD-IKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHH-hccC-cccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 999988876664 333 3344567777776 5533 4557888888887761 1233466677777777775
Q ss_pred cCCCchhHHHHHHHHHHHHH------------------------------------------------------------
Q 036703 158 RIPKGRAEDLYRKFLAFEKQ------------------------------------------------------------ 177 (365)
Q Consensus 158 ~~p~~~~~~~~~~~~~~~~~------------------------------------------------------------ 177 (365)
. |-.....+|..|..++..
T Consensus 166 t-Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I 244 (656)
T KOG1914|consen 166 T-PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWI 244 (656)
T ss_pred C-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Confidence 3 333334555555544443
Q ss_pred -----cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHhcCC
Q 036703 178 -----YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN--------------QERVREVYERAIANVP 238 (365)
Q Consensus 178 -----~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~p 238 (365)
.+-.......+..+..-+|++++..-+.++++|+.++......++ .+++.++|++++....
T Consensus 245 ~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 245 KWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 221111111122445557788888889999999999988877776 7788999998886533
Q ss_pred Cchhh----------------------hHHH--------HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc
Q 036703 239 PAEEK----------------------RYWQ--------RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM 288 (365)
Q Consensus 239 ~~~~~----------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 288 (365)
..... ..++ .+..+|+.+..+. .+....+.|+.+|.+|-+....
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~i-rR~eGlkaaR~iF~kaR~~~r~----- 398 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFI-RRAEGLKAARKIFKKAREDKRT----- 398 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHH-HHhhhHHHHHHHHHHHhhccCC-----
Confidence 22100 0000 0112445555554 3555566777777777665311
Q ss_pred hhHHHHHHHHHHHH-HhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703 289 EERRIFKKYIEMEL-CLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 289 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
+ ..+|..-|-++. ..++..-|..+|+-.+...++++..-..+..++...|+...++.+|++++..
T Consensus 399 ~-hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 399 R-HHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 1 345555555544 5688999999999999999999999999999999999999999999999987
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.87 E-value=2.1e-19 Score=133.24 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
..+.+.+|.-|++.|++..|...++++++.+|+ ..+|..++.+|...|+.+.|.+.|+++++++|++.++..++|-+++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 466889999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703 99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178 (365)
Q Consensus 99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 178 (365)
.+|++++|...|++|+.. |.- +.....|.++|.+.. +.|+++.|...|++++..+|+. ......++..+...
T Consensus 115 ~qg~~~eA~q~F~~Al~~--P~Y-~~~s~t~eN~G~Cal---~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~ 186 (250)
T COG3063 115 AQGRPEEAMQQFERALAD--PAY-GEPSDTLENLGLCAL---KAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKA 186 (250)
T ss_pred hCCChHHHHHHHHHHHhC--CCC-CCcchhhhhhHHHHh---hcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhc
Confidence 999999999999999986 221 233789999999999 9999999999999999999987 45677778888888
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
|+.. .|+..+++.....+-..+.+..-+.+....|+.+.+..+=.+.....|.+.+
T Consensus 187 ~~y~--------~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 187 GDYA--------PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred ccch--------HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 8865 5889999988888888888888889999999999988877777788998864
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=2.6e-18 Score=147.81 Aligned_cols=331 Identities=17% Similarity=0.119 Sum_probs=239.3
Q ss_pred hHHHHHHHHHHhC--CCchHHHHHH-HHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHH---------
Q 036703 4 HGRNAWDRVVTLS--PRVDQLWNNY-IRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLR--------- 65 (365)
Q Consensus 4 ~A~~~~~~~l~~~--p~~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~--------- 65 (365)
.|..+.+..+... |+++.....- ..+..+.|..++++.+..+++...-. +..+..+|-.|..
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 4555666666665 5554443333 33444556667777777777652211 2334444433321
Q ss_pred --hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703 66 --YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK 143 (365)
Q Consensus 66 --~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (365)
.--..++.+.++++++.+|+|+.+.+.++..|...++.+.|.+...++++. .+.+ +...|..++.+.. .++
T Consensus 455 eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-~~~~---~~~~whLLALvlS---a~k 527 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-NRGD---SAKAWHLLALVLS---AQK 527 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-cCCc---cHHHHHHHHHHHh---hhh
Confidence 123567888999999999999999999999999999999999999999999 6654 5899999999999 999
Q ss_pred hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHH-----------------------------------H
Q 036703 144 ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDA-----------------------------------I 188 (365)
Q Consensus 144 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 188 (365)
++.+|+.+...++...|.+. .+...-+.++...++.++.-+. .
T Consensus 528 r~~~Al~vvd~al~E~~~N~--~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNH--VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhh--hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 99999999999998877731 1111111111111111100000 0
Q ss_pred HHHHHHHHHHHHH--------c-------------CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 189 AGKMRLQYEDGVR--------K-------------NPMN-----YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 189 ~~~a~~~~~~~l~--------~-------------~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
...+...+.++.. . .|.+ ..+|...+..+...+..++|..++.++-+.+|...
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~- 684 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA- 684 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH-
Confidence 0111122211111 1 1121 25688889999999999999999999999999874
Q ss_pred hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHH--HHHHHHh
Q 036703 243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRK--LYEKYLE 319 (365)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~--~~~~al~ 319 (365)
.+|...|... ...|...+|.+.|..++.++ |+ +.....+|.++.+.|+..-|.. ++..+++
T Consensus 685 --------~~~~~~G~~~-~~~~~~~EA~~af~~Al~ld-------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 685 --------SVYYLRGLLL-EVKGQLEEAKEAFLVALALD-------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred --------HHHHHhhHHH-HHHHhhHHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 3777777777 48899999999999999999 55 6677899999999998887777 9999999
Q ss_pred hCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703 320 WSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 320 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
.+|.++++|..+|.+....|+.++|.+.|+-++++.+ ..|-
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV 789 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPV 789 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCc
Confidence 9999999999999999999999999999999999987 4443
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-18 Score=138.87 Aligned_cols=299 Identities=11% Similarity=0.046 Sum_probs=247.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchH
Q 036703 26 YIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD 104 (365)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 104 (365)
++.++....-...+..++-.-....|+ ..+...+++++...|++.+|+..|+++...+|.+....-.+|-++.+.|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 344443333344455555555666777 7888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhh
Q 036703 105 RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGI 184 (365)
Q Consensus 105 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 184 (365)
+-.++....... ... ...-|+-.+.... ..+++..|+.+-+++|..+|.+ ...+..-+.+....+...
T Consensus 284 ~~~~L~~~Lf~~-~~~----ta~~wfV~~~~l~---~~K~~~rAL~~~eK~I~~~~r~--~~alilKG~lL~~~~R~~-- 351 (564)
T KOG1174|consen 284 QDSALMDYLFAK-VKY----TASHWFVHAQLLY---DEKKFERALNFVEKCIDSEPRN--HEALILKGRLLIALERHT-- 351 (564)
T ss_pred hHHHHHHHHHhh-hhc----chhhhhhhhhhhh---hhhhHHHHHHHHHHHhccCccc--chHHHhccHHHHhccchH--
Confidence 999888888877 433 3777888888888 8999999999999999999987 455566666677777755
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH-HHHhhc
Q 036703 185 EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA-LYKEVD 263 (365)
Q Consensus 185 ~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~ 263 (365)
.|...|+.+..+-|...+.+..+...|...|.+.+|.-.-..+++..|.+.. .....| ......
T Consensus 352 ------~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~---------~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 352 ------QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR---------SLTLFGTLVLFPD 416 (564)
T ss_pred ------HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh---------hhhhhcceeeccC
Confidence 6999999999999999999999999999999999999999999999998854 222232 111124
Q ss_pred cCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchh
Q 036703 264 AGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETE 342 (365)
Q Consensus 264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 342 (365)
.-.-++|.+++++++++. |. .......++++...|...++++++++.+...| +..+...++++....+.+.
T Consensus 417 p~~rEKAKkf~ek~L~~~-------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKIN-------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred chhHHHHHHHHHhhhccC-------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHH
Confidence 445689999999999998 55 44557889999999999999999999999988 6678899999999999999
Q ss_pred HHHHHHHHHhcCcCCCC
Q 036703 343 RARAIFELAIAQPILDL 359 (365)
Q Consensus 343 ~A~~~~~~a~~~~~~~~ 359 (365)
+|.+.|..|+.++|.+.
T Consensus 489 ~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHHhcCccch
Confidence 99999999999999653
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=2.9e-19 Score=146.90 Aligned_cols=228 Identities=17% Similarity=0.157 Sum_probs=182.5
Q ss_pred hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703 100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 179 (365)
.+..+.++..+.+++.. .|.++......|+..|.++. ..|+.++|+..|+++++..|+. ...|..++..+...|
T Consensus 39 ~~~~e~~i~~~~~~l~~-~~~~~~~~a~~~~~~g~~~~---~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~~~~~g 112 (296)
T PRK11189 39 TLQQEVILARLNQILAS-RDLTDEERAQLHYERGVLYD---SLGLRALARNDFSQALALRPDM--ADAYNYLGIYLTQAG 112 (296)
T ss_pred chHHHHHHHHHHHHHcc-ccCCcHhhHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCC
Confidence 45778889999999976 66543445788999999999 9999999999999999999987 678999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259 (365)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 259 (365)
+.+ .|...|+++++.+|++..+|..+|.++...|++++|...|+++++.+|+++. ..+|..++
T Consensus 113 ~~~--------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-------~~~~~~l~-- 175 (296)
T PRK11189 113 NFD--------AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-------RALWLYLA-- 175 (296)
T ss_pred CHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHH--
Confidence 866 6999999999999999999999999999999999999999999999999852 12333222
Q ss_pred HhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHH-------hhCcchHHHHHHHH
Q 036703 260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL-------EWSPENCYAWSKYT 332 (365)
Q Consensus 260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~~~ 332 (365)
...+++++|+..|++++...+ |+ .|. ++......|+...+ ..++.+. +..|+..++|..+|
T Consensus 176 --~~~~~~~~A~~~l~~~~~~~~------~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg 243 (296)
T PRK11189 176 --ESKLDPKQAKENLKQRYEKLD------KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLA 243 (296)
T ss_pred --HccCCHHHHHHHHHHHHhhCC------cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 256789999999988765431 11 121 34444556776554 3444443 55677788999999
Q ss_pred HHHhhccchhHHHHHHHHHhcCcCCCCCcc
Q 036703 333 ELEKSLDETERARAIFELAIAQPILDLPEF 362 (365)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~ 362 (365)
.++...|++++|+..|+++++.+|.|.++.
T Consensus 244 ~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 244 KYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 999999999999999999999998666553
No 63
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.3e-18 Score=140.44 Aligned_cols=342 Identities=14% Similarity=0.068 Sum_probs=238.7
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
+|+.|+.+|..++.++|.+..++.....++.+.|++++|.+--.+.++++|+ +..|...|....-.|++++|+..|.+.
T Consensus 17 d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~G 96 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEG 96 (539)
T ss_pred cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhc---------------------chHHHHHHHHHHHhhh--hcCC---------------
Q 036703 80 VQCHPYNLSAWINFADFEMKMG---------------------EVDRARNVYECAVEIF--LADD--------------- 121 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~---------------------~~~~A~~~~~~a~~~~--~~~~--------------- 121 (365)
++.+|++..+...+++.+.... +.-.....|...++.. .|.+
T Consensus 97 L~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~ 176 (539)
T KOG0548|consen 97 LEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADG 176 (539)
T ss_pred hhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHH
Confidence 9999999999998888773220 0001111222222210 1111
Q ss_pred -------------------------------------hh------hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 122 -------------------------------------HD------EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 122 -------------------------------------~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
.. ....-...+|.... ...+++.|+..|..++.+
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay---kkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 177 QLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY---KKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH---HhhhHHHHHHHHHHHHhH
Confidence 00 01233567788777 889999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703 159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP 238 (365)
Q Consensus 159 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 238 (365)
. .. ...+...+..+...|......... +.|++.-.......-.-......+|..+...++++.|+..|++++...-
T Consensus 254 ~-~~--it~~~n~aA~~~e~~~~~~c~~~c-~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R 329 (539)
T KOG0548|consen 254 A-TD--ITYLNNIAAVYLERGKYAECIELC-EKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR 329 (539)
T ss_pred h-hh--hHHHHHHHHHHHhccHHHHhhcch-HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc
Confidence 7 33 344444444444444332211000 0111111111000000112333366677777888888888888877643
Q ss_pred C--chhh--------hHHHHhH-------HHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHH
Q 036703 239 P--AEEK--------RYWQRYI-------YLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEM 300 (365)
Q Consensus 239 ~--~~~~--------~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 300 (365)
. .... +...... .--..-|.-. +..|++..|+..|.++++.. |+ +..|.+.+-+
T Consensus 330 t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~-Fk~gdy~~Av~~YteAIkr~-------P~Da~lYsNRAac 401 (539)
T KOG0548|consen 330 TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEA-FKKGDYPEAVKHYTEAIKRD-------PEDARLYSNRAAC 401 (539)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHH-HhccCHHHHHHHHHHHHhcC-------CchhHHHHHHHHH
Confidence 3 1100 0000000 0011112222 47789999999999999988 44 7778899999
Q ss_pred HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL 357 (365)
Q Consensus 301 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 357 (365)
+.++|.+..|.+-.+.+++++|+....|..-+.++....++++|.+.|+++++.+|.
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999999999999999999999999999999999999999999999999999884
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=2.2e-19 Score=149.72 Aligned_cols=261 Identities=13% Similarity=0.137 Sum_probs=213.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE 136 (365)
Q Consensus 57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
+.-|.-+.+.|++.+|.-.|+.+++.+|.+.++|..+|......++-..|+..+.++++. .|++ ..+...+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-dP~N----leaLmaLAVSy 363 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL-DPTN----LEALMALAVSY 363 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-CCcc----HHHHHHHHHHH
Confidence 355777788999999999999999999999999999999999999999999999999999 9998 99999999999
Q ss_pred HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh-hhHHHHHHHHHHHHHHHHcCC--CCHHHHHHH
Q 036703 137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG-IEDAIAGKMRLQYEDGVRKNP--MNYDTWFDY 213 (365)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~l~~~p--~~~~~~~~~ 213 (365)
. ..|.-.+|++.+.+-|...|.. .|.....-....+.... ..........+.|-.+-...| .++++...+
T Consensus 364 t---Neg~q~~Al~~L~~Wi~~~p~y----~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 364 T---NEGLQNQALKMLDKWIRNKPKY----VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred h---hhhhHHHHHHHHHHHHHhCccc----hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 9 9999999999999999877753 22222111111110000 111123345567777777788 789999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHH
Q 036703 214 IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRI 293 (365)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 293 (365)
|.+|.-.|++++|+++|+.|+...|.+.. +|..+|..+ ....+..+|+..|.+|+++.|.+ ..+
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~---------lWNRLGAtL-AN~~~s~EAIsAY~rALqLqP~y------VR~ 500 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPNDYL---------LWNRLGATL-ANGNRSEEAISAYNRALQLQPGY------VRV 500 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCchHH---------HHHHhhHHh-cCCcccHHHHHHHHHHHhcCCCe------eee
Confidence 99999999999999999999999999853 999999987 47778999999999999999544 445
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHhhCcc----------hHHHHHHHHHHHhhccchhHHH
Q 036703 294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPE----------NCYAWSKYTELEKSLDETERAR 345 (365)
Q Consensus 294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~g~~~~A~ 345 (365)
++++|..++..|.|.+|.++|-.||.+.+. +..+|..+-.++...++.+.+.
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 699999999999999999999999988654 2358888877777777766443
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=1.7e-18 Score=138.86 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=182.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
....+..+|..+...|++++|+..++++++.+|+ ...+..++.++...|++++|...++++++..|.+...+..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3678999999999999999999999999999998 788999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703 98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ 177 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 177 (365)
...|++++|++.+++++.. .+. +.....+..++.++. ..|++++|...|+++++..|.. ...+..++.++..
T Consensus 110 ~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~ 181 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIED-PLY--PQPARSLENAGLCAL---KAGDFDKAEKYLTRALQIDPQR--PESLLELAELYYL 181 (234)
T ss_pred HHcccHHHHHHHHHHHHhc-ccc--ccchHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHHHH
Confidence 9999999999999999986 421 122678888999999 9999999999999999998876 5677788888888
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703 178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP 238 (365)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 238 (365)
.|+.+ +|...+++++...|.++..+...+.++...|+.++|..+.+.+....|
T Consensus 182 ~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 182 RGQYK--------DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred cCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 88865 699999999999898989998999999999999999998887766543
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=3.9e-17 Score=127.06 Aligned_cols=292 Identities=13% Similarity=0.092 Sum_probs=229.7
Q ss_pred HHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-----hHHHHHHHHHHHhhcch
Q 036703 30 EENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-----LSAWINFADFEMKMGEV 103 (365)
Q Consensus 30 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~~~~~~~~~~~ 103 (365)
+.-..+.++|+..|..+++.+|+ .++-+.+|+++.+.|+.++|+.+.+..+.. |+- ..+...+|.-|+..|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 33456789999999999999999 789999999999999999999998776653 432 35678889999999999
Q ss_pred HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh
Q 036703 104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG 183 (365)
Q Consensus 104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
++|.++|...++. . .....+.-.+..+|. ...++++|+++-++..+..+......+-.-|.++....--.+
T Consensus 124 DRAE~~f~~L~de-~----efa~~AlqqLl~IYQ---~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~- 194 (389)
T COG2956 124 DRAEDIFNQLVDE-G----EFAEGALQQLLNIYQ---ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS- 194 (389)
T ss_pred hHHHHHHHHHhcc-h----hhhHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh-
Confidence 9999999999886 2 223778888999999 999999999999999988877654444444444333221111
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703 184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD 263 (365)
Q Consensus 184 ~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
..++|+..+.++++.+|+++.+-..+|+++...|++..|++.++.+++.+|.-.. .+.-.+..+| ..
T Consensus 195 ----~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~--------evl~~L~~~Y-~~ 261 (389)
T COG2956 195 ----DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS--------EVLEMLYECY-AQ 261 (389)
T ss_pred ----hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH--------HHHHHHHHHH-HH
Confidence 1457999999999999999999999999999999999999999999999998532 3555566676 48
Q ss_pred cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc---c
Q 036703 264 AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD---E 340 (365)
Q Consensus 264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---~ 340 (365)
.|+.++.+..+.++.+.. +.+++-..++++.....-.+.|...+.+-+...| +......+.......+ .
T Consensus 262 lg~~~~~~~fL~~~~~~~-------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 262 LGKPAEGLNFLRRAMETN-------TGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred hCCHHHHHHHHHHHHHcc-------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccc
Confidence 999999999999999987 5566667777777777888999999999999999 5555566666655433 3
Q ss_pred hhHHHHHHHHHh
Q 036703 341 TERARAIFELAI 352 (365)
Q Consensus 341 ~~~A~~~~~~a~ 352 (365)
..+...++.+++
T Consensus 334 ~k~sL~~lr~mv 345 (389)
T COG2956 334 AKESLDLLRDMV 345 (389)
T ss_pred hhhhHHHHHHHH
Confidence 344444444444
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=1.4e-18 Score=128.89 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=167.3
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++..|+.-++++|+.+|++..+|..++.+|.+.|+.+.|.+.|++|++++|+ .++...+|-+++.+|.+++|...|+++
T Consensus 50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 80 VQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 80 l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
+.. .|.....|.++|.|..+.|+++.|.+.|+++++. .|+. +.....++..+. ..|++-.|+..+++...
T Consensus 130 l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-dp~~----~~~~l~~a~~~~---~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 130 LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-DPQF----PPALLELARLHY---KAGDYAPARLYLERYQQ 201 (250)
T ss_pred HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-CcCC----ChHHHHHHHHHH---hcccchHHHHHHHHHHh
Confidence 983 5667889999999999999999999999999999 9988 999999999999 99999999999999888
Q ss_pred cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH-HcCCCCHHH
Q 036703 158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV-RKNPMNYDT 209 (365)
Q Consensus 158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l-~~~p~~~~~ 209 (365)
..+.. ......-+.+....|+.+ +..-|+.-| ..+|.+.+.
T Consensus 202 ~~~~~--A~sL~L~iriak~~gd~~---------~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 202 RGGAQ--AESLLLGIRIAKRLGDRA---------AAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred ccccc--HHHHHHHHHHHHHhccHH---------HHHHHHHHHHHhCCCcHHH
Confidence 76643 455555677888888865 334454444 578887553
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.84 E-value=3.5e-17 Score=138.36 Aligned_cols=342 Identities=12% Similarity=0.047 Sum_probs=231.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
+|....+..+.+++.+|..++..-..|-.+...|+.++|-.....++..++. ...|..+|-++....+|++|+..|+.|
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3566777888899999999999999999999999999999999999998888 689999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
+...|+|..+|..++.+..+.++++.....-.+.++. .|.. ...|+.++..+. -.|++..|..+.+...+..
T Consensus 102 l~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~----ra~w~~~Avs~~---L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 102 LKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQ----RASWIGFAVAQH---LLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhh----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999 8877 999999999999 9999999999988877654
Q ss_pred ---CCch---hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703 160 ---PKGR---AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERA 233 (365)
Q Consensus 160 ---p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 233 (365)
|+.. ......--.......|... .|.+.+..--...-+....-...+.++...+++++|..+|...
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q--------~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQ--------KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHH--------HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 3321 1111111122222333322 1111111111111112223344455566666666666666666
Q ss_pred HhcCCCchhhh------HH--HH---------------------hHHHHHHHH----------HHH--hhccCC---hhH
Q 036703 234 IANVPPAEEKR------YW--QR---------------------YIYLWINYA----------LYK--EVDAGD---LER 269 (365)
Q Consensus 234 ~~~~p~~~~~~------~~--~~---------------------~~~~~~~~~----------~~~--~~~~~~---~~~ 269 (365)
+..+|++..-. +| .. ...+-+... .++ .++.|- +..
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 66666653210 00 00 000000000 000 000000 000
Q ss_pred HHH---------HHHHHHhc-----cc-------cCCCc-chhHHHHHH--HHHHHHHhCCCccHHHHHHHHHhhCcchH
Q 036703 270 TRD---------VYRTLFIF-----YF-------SFSPR-MEERRIFKK--YIEMELCLGNIDPCRKLYEKYLEWSPENC 325 (365)
Q Consensus 270 a~~---------~~~~a~~~-----~~-------~~~~~-~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 325 (365)
-+. +.++.+.. .+ +.+.. -|.+-+|.. ++.-+-..|+++.|..+.+.|+...|+-+
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli 405 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI 405 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence 001 11111100 00 00000 033445554 45556689999999999999999999999
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 326 YAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
+.+..-+.+....|++++|...++++.+++..|
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999887543
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=6e-17 Score=126.03 Aligned_cols=270 Identities=17% Similarity=0.133 Sum_probs=225.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHHhccHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLRYNEVQRARH 74 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~ 74 (365)
+.++|..+|-.+++.+|...++...+|.++.+.|..+.|+.+-+..++ .|+ ..+...++.-|...|=+++|..
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 458899999999999999999999999999999999999998776654 565 3467889999999999999999
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703 75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153 (365)
Q Consensus 75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 153 (365)
+|....+...--..+...+..+|....++++|+++-++..+. .|.. ...-...+..++..+. ...+.+.|+..++
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~---~~~~~d~A~~~l~ 204 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQAL---ASSDVDRARELLK 204 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHh---hhhhHHHHHHHHH
Confidence 999998866656788999999999999999999999999998 6654 2344667788888888 8899999999999
Q ss_pred HHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHH
Q 036703 154 FALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYER 232 (365)
Q Consensus 154 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~ 232 (365)
++++.+|.. +..-..++.++...|++. +|++.++++++.+|... .+.-.+..+|...|+.++....+.+
T Consensus 205 kAlqa~~~c--vRAsi~lG~v~~~~g~y~--------~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 205 KALQADKKC--VRASIILGRVELAKGDYQ--------KAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHhhCccc--eehhhhhhHHHHhccchH--------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999986 556677788888999866 79999999999999875 5777888899999999999999999
Q ss_pred HHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH
Q 036703 233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC 303 (365)
Q Consensus 233 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (365)
+++..+... +-+..+...+ ...-.+.|...+.+-+..+ |+...+..+.+....
T Consensus 275 ~~~~~~g~~----------~~l~l~~lie-~~~G~~~Aq~~l~~Ql~r~-------Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 275 AMETNTGAD----------AELMLADLIE-LQEGIDAAQAYLTRQLRRK-------PTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHccCCcc----------HHHHHHHHHH-HhhChHHHHHHHHHHHhhC-------CcHHHHHHHHHhhhc
Confidence 999988753 3344455543 5566788888888888777 776666677666553
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=8.6e-18 Score=134.83 Aligned_cols=202 Identities=12% Similarity=0.138 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...+..++..+...|++++|...+++++..+|++...+..++.++...|++++|++.++++++. .|.+ ...+..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~----~~~~~~~ 105 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNN----GDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----HHHHHHH
Confidence 5788899999999999999999999999999999999999999999999999999999999999 8887 8899999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD 212 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~ 212 (365)
+.++. ..|++++|...|++++...+.......+..++..+...|+.+ .|...+++++..+|++..++..
T Consensus 106 ~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 106 GTFLC---QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD--------KAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHHH---HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCcCChHHHHH
Confidence 99999 999999999999999985433223557777888888888865 6999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 213 YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 213 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
++.++...|++++|...+++++...|.++. .+...+.++ ...|+.++|+...+.+...
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAE---------SLWLGIRIA-RALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH-HHHhhHHHHHHHHHHHHhh
Confidence 999999999999999999999998776543 444555665 5789999999888777654
No 71
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=5.9e-18 Score=137.66 Aligned_cols=284 Identities=13% Similarity=0.089 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRY--NEVQRARHIFERLVQCHPYNLSAWINFADF 96 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 96 (365)
++-+.-+--++++|+++.|+++++-.-+.+.. ..+-..+..++..+ .++..|.++-..++..+..++.+...-|.+
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 33445566778899999999998766555444 33444455444443 478899999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703 97 EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 176 (365)
....|++++|.+.|++++.. ...- ..++++.|..+. .+|+.++|++.|-+...+.-++ +.+....+.++.
T Consensus 500 ~f~ngd~dka~~~ykeal~n-dasc----~ealfniglt~e---~~~~ldeald~f~klh~il~nn--~evl~qianiye 569 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNN-DASC----TEALFNIGLTAE---ALGNLDEALDCFLKLHAILLNN--AEVLVQIANIYE 569 (840)
T ss_pred eeecCcHHHHHHHHHHHHcC-chHH----HHHHHHhcccHH---HhcCHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHH
Confidence 99999999999999999988 5443 889999999999 9999999999999877665554 677888888887
Q ss_pred HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHH
Q 036703 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINY 256 (365)
Q Consensus 177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 256 (365)
...++. +|++++-++...-|+++.++..++++|-+.|+-..|..++-..-...|.+-+ ..--+
T Consensus 570 ~led~a--------qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie---------~iewl 632 (840)
T KOG2003|consen 570 LLEDPA--------QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIE---------TIEWL 632 (840)
T ss_pred HhhCHH--------HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchH---------HHHHH
Confidence 777765 6999999999999999999999999999999999999999999999999854 33334
Q ss_pred HHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHH-HHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHH
Q 036703 257 ALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFK-KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELE 335 (365)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 335 (365)
+.+| ....-.++++.+|+++.-.. |...-|. ..+.+..+.|++.+|...|+......|.+.+....+.++.
T Consensus 633 ~ayy-idtqf~ekai~y~ekaaliq-------p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 633 AAYY-IDTQFSEKAINYFEKAALIQ-------PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHH-HhhHHHHHHHHHHHHHHhcC-------ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 5555 57778899999999998887 6644444 4566777999999999999999999999999888888877
Q ss_pred hhcc
Q 036703 336 KSLD 339 (365)
Q Consensus 336 ~~~g 339 (365)
-.+|
T Consensus 705 ~dlg 708 (840)
T KOG2003|consen 705 GDLG 708 (840)
T ss_pred cccc
Confidence 6666
No 72
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=141.65 Aligned_cols=333 Identities=14% Similarity=0.088 Sum_probs=223.5
Q ss_pred hhHHHHHHHHHH--hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHHhccHHHHHH
Q 036703 3 DHGRNAWDRVVT--LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLRYNEVQRARH 74 (365)
Q Consensus 3 ~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~ 74 (365)
.+|...|+-.++ .+|+...+-..+|.++++..++.+|+++|.-++...|+ ..+....+-...+.|.++.|+.
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence 345555655553 25666666666777777777777777777777777666 2233444445556677777777
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh-hcCC--------hhhH--------------------
Q 036703 75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF-LADD--------HDEA-------------------- 125 (365)
Q Consensus 75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~--------~~~~-------------------- 125 (365)
.|..+++..| +..+-+.+..++...|+-++..+.|.+++..+ .+++ +++.
T Consensus 298 sfdh~m~~~p-n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k 376 (840)
T KOG2003|consen 298 SFDHCMEEAP-NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK 376 (840)
T ss_pred hHHHHHHhCc-cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh
Confidence 7777777777 55555666666666777777777777776652 0110 0000
Q ss_pred ------------------------------------------HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 126 ------------------------------------------EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 126 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
..+-+..+.-+. ++|+++.|+++++-.-+.+....
T Consensus 377 a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l---k~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 377 ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL---KNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH---hccCHHHHHHHHHHHHhccchhh
Confidence 000112222333 78999999988875544332211
Q ss_pred hHHHHHHHHHHHHHcCC--chhhh--------------------------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 036703 164 AEDLYRKFLAFEKQYGD--REGIE--------------------------DAIAGKMRLQYEDGVRKNPMNYDTWFDYIR 215 (365)
Q Consensus 164 ~~~~~~~~~~~~~~~~~--~~~~~--------------------------~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~ 215 (365)
+. .-..+..+....|. +...+ .-.+++|...|..+|..+....++++.+|.
T Consensus 454 sa-aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl 532 (840)
T KOG2003|consen 454 SA-AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL 532 (840)
T ss_pred HH-HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence 11 11111111111111 00000 002367888888888888888888888888
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHH
Q 036703 216 LEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIF 294 (365)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~ 294 (365)
.+...|+.++|..+|-+.-.+.-++. .++...+..|| ...+..+|++++.++..+- |. |.+.
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~---------evl~qianiye-~led~aqaie~~~q~~sli-------p~dp~il 595 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNA---------EVLVQIANIYE-LLEDPAQAIELLMQANSLI-------PNDPAIL 595 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHH-HhhCHHHHHHHHHHhcccC-------CCCHHHH
Confidence 88888999999998888776655553 37777888886 7888999999999888876 44 7888
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL 357 (365)
Q Consensus 295 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 357 (365)
..++++|-+.|+-.+|..++-......|.|.++...++..|....=.++|+..|+++--..|.
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 899999999999999999988888889999998888888888888889999999998777774
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=4.9e-18 Score=141.83 Aligned_cols=260 Identities=14% Similarity=0.107 Sum_probs=211.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703 24 NNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102 (365)
Q Consensus 24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 102 (365)
+.-|..+++.|++.+|.-.|+.+++.+|. .++|..+|......++-..|+..++++++++|++..+.+.+|-.|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45688889999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHH---------HHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 036703 103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAK---------FEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA 173 (365)
Q Consensus 103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 173 (365)
-..|.+.+.+-+.. .|.. .|...+. -.. ....+....+.|-.+-...|.....++...++.
T Consensus 369 q~~Al~~L~~Wi~~-~p~y------~~l~~a~~~~~~~~~~s~~---~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 369 QNQALKMLDKWIRN-KPKY------VHLVSAGENEDFENTKSFL---DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHHHHHHHHHHHh-Cccc------hhccccCccccccCCcCCC---CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 99999999999888 6543 2221110 001 222344566677777777776556889999999
Q ss_pred HHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHH
Q 036703 174 FEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLW 253 (365)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 253 (365)
++.-.|+++ +|+.+|+.+|+..|++..+|..+|-.+....+..+|+..|.+|++.-|.- +.++
T Consensus 439 Ly~ls~efd--------raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---------VR~R 501 (579)
T KOG1125|consen 439 LYNLSGEFD--------RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY---------VRVR 501 (579)
T ss_pred HHhcchHHH--------HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---------eeee
Confidence 988888866 79999999999999999999999999999999999999999999999985 6688
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHhccccCCC---c-chhHHHHHHHHHHHHHhCCCccHH
Q 036703 254 INYALYKEVDAGDLERTRDVYRTLFIFYFSFSP---R-MEERRIFKKYIEMELCLGNIDPCR 311 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~A~ 311 (365)
+++|..+ +..|.|++|.+.|-.++........ . .+...+|..+=.+...+++.+-+.
T Consensus 502 yNlgIS~-mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 502 YNLGISC-MNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhhhhh-hhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 8888887 7999999999999999988543111 0 022456766665555566655443
No 74
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.81 E-value=2.5e-17 Score=149.84 Aligned_cols=253 Identities=22% Similarity=0.384 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHH
Q 036703 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARC 150 (365)
Q Consensus 71 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 150 (365)
+..+-|++.+..+|++...|+.|..+..+.++.++|+++.++|+...++....+...+|..+.+++. .-|.-+...+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl~k 1518 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESLKK 1518 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHHHH
Confidence 3456788999999999999999999999999999999999999988344433556789999999999 8898899999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 036703 151 IYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVY 230 (365)
Q Consensus 151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 230 (365)
+|++|.+.+.. ..++..+..++...+..+ .|.++|+.+++.+.+...+|..+++++..+.+-+.|+.++
T Consensus 1519 VFeRAcqycd~---~~V~~~L~~iy~k~ek~~--------~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1519 VFERACQYCDA---YTVHLKLLGIYEKSEKND--------EADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred HHHHHHHhcch---HHHHHHHHHHHHHhhcch--------hHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHH
Confidence 99999997754 468888888888777655 6899999999998888899999999999999999999999
Q ss_pred HHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCcc
Q 036703 231 ERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDP 309 (365)
Q Consensus 231 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 309 (365)
.+|++..|.... +.+.-..|+++ +..|+.++++.+|+..+..+ |. .++|..|++..++.|+.+.
T Consensus 1588 ~rAL~~lPk~eH-------v~~IskfAqLE-Fk~GDaeRGRtlfEgll~ay-------PKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1588 KRALKSLPKQEH-------VEFISKFAQLE-FKYGDAERGRTLFEGLLSAY-------PKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred HHHHhhcchhhh-------HHHHHHHHHHH-hhcCCchhhHHHHHHHHhhC-------ccchhHHHHHHHHHHccCCHHH
Confidence 999999999543 56777888885 79999999999999999988 66 8899999999999999999
Q ss_pred HHHHHHHHHhh--CcchHH-HHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 310 CRKLYEKYLEW--SPENCY-AWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 310 A~~~~~~al~~--~p~~~~-~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
++.+|+|++.+ .|.... ++..+..++..+|+...+..+=.+|.
T Consensus 1653 vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 99999999987 344444 56677788888998776666655554
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.81 E-value=4.6e-17 Score=140.29 Aligned_cols=291 Identities=11% Similarity=0.065 Sum_probs=234.9
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
.++.+.++++++.+|+|+.+.+.++--+.-+++++.|.....+++++++. ...|..++-+....+++..|+.+...++
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999776 7899999999999999999999999999
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH---------HHHHHHHhccccchhHHHHHH
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV---------AFAKFEEMGCNCKETDRARCI 151 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~A~~~ 151 (365)
.-.|+|......-+.+....++.++|.......+.. .... ..+-. ..+.+.. ..++..+|.+.
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we~~----~~~q~~~~~g~~~~lk~~l~l---a~~q~~~a~s~ 612 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WEAE----YGVQQTLDEGKLLRLKAGLHL---ALSQPTDAIST 612 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HHhh----hhHhhhhhhhhhhhhhccccc---Ccccccccchh
Confidence 999998888887788888889999998888777766 3321 11111 1111222 23344444444
Q ss_pred HHHHhcc-------------CC------Cc-----hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH
Q 036703 152 YKFALDR-------------IP------KG-----RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY 207 (365)
Q Consensus 152 ~~~~l~~-------------~p------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~ 207 (365)
.+++... .| .. ....+|...+......+..+ .+..++.++-..+|..+
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~--------~a~~CL~Ea~~~~~l~~ 684 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDD--------EARSCLLEASKIDPLSA 684 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHhcchhhH
Confidence 4333221 11 11 13457777777777777765 58888999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHH--HHHHHHhccccCC
Q 036703 208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRD--VYRTLFIFYFSFS 285 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~a~~~~~~~~ 285 (365)
..|+..|.++...|...+|...|..++..+|+++. ....+|.++ ...|+..-|.. ++..+++.+
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---------s~~Ala~~l-le~G~~~la~~~~~L~dalr~d---- 750 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---------SMTALAELL-LELGSPRLAEKRSLLSDALRLD---- 750 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---------HHHHHHHHH-HHhCCcchHHHHHHHHHHHhhC----
Confidence 99999999999999999999999999999999854 677788887 57887776666 999999998
Q ss_pred Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHH
Q 036703 286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCY 326 (365)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 326 (365)
|. ++.|..+|.+..+.|+.++|.++|.-++++.+.+|.
T Consensus 751 ---p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 751 ---PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred ---CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 55 889999999999999999999999999999887653
No 76
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.79 E-value=2.9e-15 Score=124.40 Aligned_cols=333 Identities=16% Similarity=0.292 Sum_probs=211.0
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHh-ccHHHHHHH----H
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRY-NEVQRARHI----F 76 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~A~~~----~ 76 (365)
+++++..|++.+...|.++.+|..++..+....+++....+|.|++...-+.++|..|...-.+. |+...++.. |
T Consensus 35 ~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy 114 (656)
T KOG1914|consen 35 IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAY 114 (656)
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999997655567777776554432 232222222 2
Q ss_pred HHHHH---hCCcchHHHHHHHHHHHh---------hcchHHHHHHHHHHHhhhhcCC-----------------------
Q 036703 77 ERLVQ---CHPYNLSAWINFADFEMK---------MGEVDRARNVYECAVEIFLADD----------------------- 121 (365)
Q Consensus 77 ~~~l~---~~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~----------------------- 121 (365)
+=++. .++.+..+|..++.++.. +.+.+..+++|++|+..+..+-
T Consensus 115 ~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i 194 (656)
T KOG1914|consen 115 DFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFI 194 (656)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 345556666666665432 1244555666666665411000
Q ss_pred --------------------------------------hhhHHHHHHHHHHHHHhc------------------------
Q 036703 122 --------------------------------------HDEAEQLFVAFAKFEEMG------------------------ 139 (365)
Q Consensus 122 --------------------------------------~~~~~~~~~~~~~~~~~~------------------------ 139 (365)
......+|.+++.++...
T Consensus 195 ~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~ 274 (656)
T KOG1914|consen 195 GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLY 274 (656)
T ss_pred HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH
Confidence 001122343333333200
Q ss_pred ---------------cccch--------------hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHH
Q 036703 140 ---------------CNCKE--------------TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG 190 (365)
Q Consensus 140 ---------------~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (365)
...++ -+++..+|++++...-.. ...++..++.+....-+... .+
T Consensus 275 l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n~-----~~ 348 (656)
T KOG1914|consen 275 LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDNK-----EK 348 (656)
T ss_pred HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccch-----hh
Confidence 01122 344455555544422221 12344444443332221110 12
Q ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhH
Q 036703 191 KMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269 (365)
Q Consensus 191 ~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (365)
+....+++.+.....++ -+|..+..+-.+..-...|+.+|.++-+..-...+ +.+...+..++ ..++..-
T Consensus 349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh-------VfVa~A~mEy~--cskD~~~ 419 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH-------VFVAAALMEYY--CSKDKET 419 (656)
T ss_pred hhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch-------hhHHHHHHHHH--hcCChhH
Confidence 34445555555433332 35666666666666777888888888765322211 34444455553 7899999
Q ss_pred HHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh--Ccc-hHHHHHHHHHHHhhccchhHHH
Q 036703 270 TRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW--SPE-NCYAWSKYTELEKSLDETERAR 345 (365)
Q Consensus 270 a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~~~~~~~~~g~~~~A~ 345 (365)
|..+|+-+++.. ++ +.....+.+++...|+-+.|+.+|++++.. .|+ +..+|..+..++...|+...+.
T Consensus 420 AfrIFeLGLkkf-------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 420 AFRIFELGLKKF-------GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred HHHHHHHHHHhc-------CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 999999999998 55 778889999999999999999999999987 443 5689999999999999999999
Q ss_pred HHHHHHhcCcC
Q 036703 346 AIFELAIAQPI 356 (365)
Q Consensus 346 ~~~~~a~~~~~ 356 (365)
++-++-...-|
T Consensus 493 ~lekR~~~af~ 503 (656)
T KOG1914|consen 493 KLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhcc
Confidence 98877766555
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.6e-15 Score=125.94 Aligned_cols=312 Identities=15% Similarity=0.119 Sum_probs=205.5
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh-------------
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY------------- 66 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~------------- 66 (365)
+|++|.+--.+.++++|+-+..|...|......|++++|+..|.+.|+.+|+ ..+...++..+...
T Consensus 51 ~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~ 130 (539)
T KOG0548|consen 51 SYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFH 130 (539)
T ss_pred hHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHH
Confidence 3677888888888899999999999999999999999999999999998888 44444454443111
Q ss_pred ----ccH----HHHHHHHHHHH---HhCCcc-------------------------------------------------
Q 036703 67 ----NEV----QRARHIFERLV---QCHPYN------------------------------------------------- 86 (365)
Q Consensus 67 ----~~~----~~A~~~~~~~l---~~~p~~------------------------------------------------- 86 (365)
++. ......|...+ +.+|.+
T Consensus 131 ~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (539)
T KOG0548|consen 131 EKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPI 210 (539)
T ss_pred HHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCc
Confidence 000 00000011100 000000
Q ss_pred -------------hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHH----------------------
Q 036703 87 -------------LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQL---------------------- 128 (365)
Q Consensus 87 -------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~---------------------- 128 (365)
..-...+|....+..+++.|++.|..+++. . .+ ......+
T Consensus 211 ~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el-~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr 288 (539)
T KOG0548|consen 211 IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL-A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR 288 (539)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH-h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence 001233444444555666666666666665 4 22 0000011
Q ss_pred ------------HHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHH
Q 036703 129 ------------FVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQY 196 (365)
Q Consensus 129 ------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 196 (365)
...+|..+. ..++++.++..|++++..... ..+....-. .+++....
T Consensus 289 e~rad~klIak~~~r~g~a~~---k~~~~~~ai~~~~kaLte~Rt---~~~ls~lk~---------------~Ek~~k~~ 347 (539)
T KOG0548|consen 289 ELRADYKLIAKALARLGNAYT---KREDYEGAIKYYQKALTEHRT---PDLLSKLKE---------------AEKALKEA 347 (539)
T ss_pred HHHHHHHHHHHHHHHhhhhhh---hHHhHHHHHHHHHHHhhhhcC---HHHHHHHHH---------------HHHHHHHH
Confidence 111223344 556777777777776654332 111111111 22455555
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703 197 EDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT 276 (365)
Q Consensus 197 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 276 (365)
++....+|.-..--..-|.-+...|++..|+..|.++++.+|++.. ++.+.+.++ ...|.+..|+.-.+.
T Consensus 348 e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---------lYsNRAac~-~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 348 ERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---------LYSNRAACY-LKLGEYPEALKDAKK 417 (539)
T ss_pred HHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---------HHHHHHHHH-HHHhhHHHHHHHHHH
Confidence 5555566766666666788889999999999999999999999864 788888887 699999999999999
Q ss_pred HHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 277 LFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 277 a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
+++++ |+ ...|..-|.++..+.++++|.+.|+++++.+|++..+...+..+...........++.++++
T Consensus 418 ~ieL~-------p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 418 CIELD-------PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM 487 (539)
T ss_pred HHhcC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc
Confidence 99998 44 66677778888899999999999999999999999998888888886544444555555543
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.79 E-value=1.7e-17 Score=146.38 Aligned_cols=321 Identities=11% Similarity=0.082 Sum_probs=202.4
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
+|++.|++|.+++|.+..+|-..++.+....+.+.|..+.-++-+..|- ...|...+-.+...++...|+.-|+.++
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 4555555555555555555555555555555555555554444444444 3456666666666777777888888888
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
..+|.+...|..+|..|.+.|.+..|.++|.++... .|.+ ...-+..+.+.. ..|.+.+|+..+...+....
T Consensus 590 R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-rP~s----~y~~fk~A~~ec---d~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 590 RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-RPLS----KYGRFKEAVMEC---DNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-CcHh----HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888 7665 555556666666 77888888888777665432
Q ss_pred Cc-----hhHHHHHHHHHHHHHcCCc----hhhhHH--------------------HH----------------------
Q 036703 161 KG-----RAEDLYRKFLAFEKQYGDR----EGIEDA--------------------IA---------------------- 189 (365)
Q Consensus 161 ~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~--------------------~~---------------------- 189 (365)
.. ..+..+.+.+....-.|-. +-+++. +.
T Consensus 662 ~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~i 741 (1238)
T KOG1127|consen 662 LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLII 741 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHH
Confidence 21 1112222211111111100 000000 00
Q ss_pred -----------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHhcCCCchhhh
Q 036703 190 -----------------GKMRLQYEDGVRKNPMNYDTWFDYIRLEER--------VGNQERVREVYERAIANVPPAEEKR 244 (365)
Q Consensus 190 -----------------~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~ 244 (365)
-.+.+.+-..+.. ..+...|.++|..+.+ ..+...|+.++.++++.+.++..
T Consensus 742 l~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~-- 818 (1238)
T KOG1127|consen 742 LSKQLEKTGALKKNDLLFLGYECGIAHLSL-AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEG-- 818 (1238)
T ss_pred HHHHHHhcccCcchhHHHHHHHHhhHHHHH-hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHH--
Confidence 0011111111110 0012345666654433 12334677888888887776643
Q ss_pred HHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703 245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN 324 (365)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 324 (365)
+|..++.+ ...|++.-|...|-+.+...|.. ...|.+++.++.+..+++.|...|.++..++|.+
T Consensus 819 -------~WnaLGVl--sg~gnva~aQHCfIks~~sep~~------~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 819 -------LWNALGVL--SGIGNVACAQHCFIKSRFSEPTC------HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred -------HHHHHHHh--hccchhhhhhhhhhhhhhccccc------hhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 77777766 35677888888888877776322 5566888888888889999999999999999999
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHH
Q 036703 325 CYAWSKYTELEKSLDETERARAIFEL 350 (365)
Q Consensus 325 ~~~~~~~~~~~~~~g~~~~A~~~~~~ 350 (365)
...|...+.+....|+.-++..+|..
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999998889988888888877
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.78 E-value=1.6e-16 Score=135.93 Aligned_cols=262 Identities=16% Similarity=0.141 Sum_probs=199.4
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--------CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW--------MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC---- 82 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---- 82 (365)
+|.-..+...++..+...|++++|...|+++++. .|. ......+|.++...+++.+|..+|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666666777999999999999999999999987 566 344456899999999999999999999974
Q ss_pred ----CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc----CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703 83 ----HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA----DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF 154 (365)
Q Consensus 83 ----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 154 (365)
+|.-..++..++.+|.+.|++++|..++++|+++ .. .+++.....+...+.++. ..+++++|..++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-~~~~~~~~~~~v~~~l~~~~~~~~---~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-YEKLLGASHPEVAAQLSELAAILQ---SMNEYEEAKKLLQK 350 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-HHHhhccChHHHHHHHHHHHHHHH---HhcchhHHHHHHHH
Confidence 4555678899999999999999999999999987 32 234555677788888888 88999999999887
Q ss_pred HhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703 155 ALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR-KNPMNYDTWFDYIRLEERVGNQERVREVYERA 233 (365)
Q Consensus 155 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 233 (365)
++++. .++.. .+|.-......+|.++...|++++|.++|+++
T Consensus 351 al~i~-------------------------------------~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 351 ALKIY-------------------------------------LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHH-------------------------------------HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 76431 11111 12233567888999999999999999999999
Q ss_pred HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHH
Q 036703 234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRK 312 (365)
Q Consensus 234 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~ 312 (365)
+.+.........+.. -..+..++..+ .+.+.+..|..+|..+..+........|+ ...+.+++.+|..+|+++.|.+
T Consensus 394 i~~~~~~~~~~~~~~-~~~l~~la~~~-~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 394 IQILRELLGKKDYGV-GKPLNQLAEAY-EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHhcccCcChhh-hHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 987532211111010 11334455555 48899999999999988775433333255 6678899999999999999999
Q ss_pred HHHHHHhh
Q 036703 313 LYEKYLEW 320 (365)
Q Consensus 313 ~~~~al~~ 320 (365)
+.++++..
T Consensus 472 ~~~~~~~~ 479 (508)
T KOG1840|consen 472 LEEKVLNA 479 (508)
T ss_pred HHHHHHHH
Confidence 99998843
No 80
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=4.9e-16 Score=127.39 Aligned_cols=205 Identities=11% Similarity=0.018 Sum_probs=173.1
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccH--HHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG-NVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEV--QRARHIFE 77 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~--~~A~~~~~ 77 (365)
.++|..++.++++++|++..+|...+.++...| ++++++..++++++.+|+ ..+|...+.+....|+. +++..++.
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 578999999999999999999999999999998 679999999999999999 68999998888877763 77899999
Q ss_pred HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc---chh----HHHHH
Q 036703 78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC---KET----DRARC 150 (365)
Q Consensus 78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~A~~ 150 (365)
++++.+|.+..+|...+-++...|+++++++.++++++. .|.+ ..+|...+.+.. .. |.+ ++++.
T Consensus 133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~~N----~sAW~~R~~vl~---~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DVRN----NSAWNQRYFVIT---RSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CCCc----hhHHHHHHHHHH---hccccccccccHHHHHH
Confidence 999999999999999999999999999999999999999 9988 999999988776 54 222 57888
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 036703 151 IYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV 220 (365)
Q Consensus 151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 220 (365)
+..++|...|.+. ..|.-+..++...+..-. ....+...+.+++..+|+++.+.-.+++++...
T Consensus 205 y~~~aI~~~P~N~--SaW~Yl~~ll~~~~~~l~----~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 205 YTIDAILANPRNE--SPWRYLRGLFKDDKEALV----SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHhCCCCc--CHHHHHHHHHhcCCcccc----cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8889999999984 566666555554332100 012477888888889999999999999988653
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.77 E-value=4e-15 Score=127.12 Aligned_cols=316 Identities=11% Similarity=-0.029 Sum_probs=220.9
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI 91 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 91 (365)
+|+.+.++..++.++...|+.+.+...+.++.+..|. .......+......|++++|...+++++..+|++...+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 7999999999999999999999999999999887775 345566677888999999999999999999999887776
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHH
Q 036703 92 NFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF 171 (365)
Q Consensus 92 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 171 (365)
. +..+...|....+.....+++....|.. +........++.++. .+|++++|...++++++..|.+ ...+..+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~---~~G~~~~A~~~~~~al~~~p~~--~~~~~~l 154 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPEN-PDYWYLLGMLAFGLE---EAGQYDRAEEAARRALELNPDD--AWAVHAV 154 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCC-CCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCC--cHHHHHH
Confidence 4 4444444443333333333333202222 333777778889999 9999999999999999999987 5677788
Q ss_pred HHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHH
Q 036703 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY----DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQ 247 (365)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 247 (365)
+.++...|+.+ +|+..+++++...|.++ ..|..++.++...|++++|...|++++...|......
T Consensus 155 a~i~~~~g~~~--------eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~--- 223 (355)
T cd05804 155 AHVLEMQGRFK--------EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL--- 223 (355)
T ss_pred HHHHHHcCCHH--------HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH---
Confidence 88888888865 69999999999877543 3567899999999999999999999987665321100
Q ss_pred HhHHHHHHHHHHHhhccCChhHHHHH---HHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc--
Q 036703 248 RYIYLWINYALYKEVDAGDLERTRDV---YRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP-- 322 (365)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-- 322 (365)
........+... ...|....+... ........+. ..+ .......+......|+.+.|...++.+....-
T Consensus 224 ~~~~~~~~l~~~--~~~g~~~~~~~w~~~~~~~~~~~~~--~~~--~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~ 297 (355)
T cd05804 224 DLLDAASLLWRL--ELAGHVDVGDRWEDLADYAAWHFPD--HGL--AFNDLHAALALAGAGDKDALDKLLAALKGRASSA 297 (355)
T ss_pred HHhhHHHHHHHH--HhcCCCChHHHHHHHHHHHHhhcCc--ccc--hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 000000001111 123333322222 1221111111 111 12223566777788999999999998765321
Q ss_pred -------chHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 323 -------ENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 323 -------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
..+.+....+..+...|+.++|...+..++...
T Consensus 298 ~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 298 DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 134566777888889999999999999998654
No 82
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=1.5e-15 Score=124.51 Aligned_cols=215 Identities=10% Similarity=0.061 Sum_probs=177.6
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN-EVQRARHIFERLVQCHPYNLSAWINF 93 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~ 93 (365)
.|+...++..+-.++...+..++|+..+.++++++|+ ..+|...+.++...| ++++++..+.++++.+|++..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 3455566766777778889999999999999999999 789999999998888 68999999999999999999999999
Q ss_pred HHHHHhhcch--HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHH
Q 036703 94 ADFEMKMGEV--DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF 171 (365)
Q Consensus 94 ~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 171 (365)
+.+..+.|.. ++++.+++++++. .|.+ ..+|...+.++. ..|+++++++.+.++|+.+|.+. ..|...
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~-dpkN----y~AW~~R~w~l~---~l~~~~eeL~~~~~~I~~d~~N~--sAW~~R 182 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSL-DAKN----YHAWSHRQWVLR---TLGGWEDELEYCHQLLEEDVRNN--SAWNQR 182 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHh-Cccc----HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHCCCch--hHHHHH
Confidence 9998888864 7889999999999 9998 999999999999 99999999999999999999884 566655
Q ss_pred HHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCch
Q 036703 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER----VGNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 241 (365)
..+....+....... ..+..+....+++..+|+|..+|..++-++.. .+...+|...+.+++...|.+.
T Consensus 183 ~~vl~~~~~l~~~~~-~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 183 YFVITRSPLLGGLEA-MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred HHHHHhccccccccc-cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 544444322111110 12356777789999999999999999998876 3455679999999988877764
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.7e-14 Score=121.24 Aligned_cols=335 Identities=11% Similarity=0.100 Sum_probs=228.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
+|++|.+...+++...|++..+...-.-+..+.+++++|..+.+.-....-.....+.-+.+..+.|..++|...++
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~--- 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK--- 103 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---
Confidence 47899999999999999999999999999999999999985544332222223333677888899999999999998
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---------------------------hhhHHHHHHHHH
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---------------------------HDEAEQLFVAFA 133 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------------------~~~~~~~~~~~~ 133 (365)
..++.+..+....|+++.+.|++++|.++|+..++. ..++ ..++....++.+
T Consensus 104 ~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~A 182 (652)
T KOG2376|consen 104 GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTA 182 (652)
T ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHH
Confidence 566767778889999999999999999999999765 3222 223466778888
Q ss_pred HHHHhccccchhHHHHHHHHHHhccCC--------C-----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDRIP--------K-----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV 200 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 200 (365)
..+. ..|++.+|++.++++++.+. . .....+...++..+...|... +|..+|...+
T Consensus 183 c~~i---~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~--------ea~~iy~~~i 251 (652)
T KOG2376|consen 183 CILI---ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA--------EASSIYVDII 251 (652)
T ss_pred HHHH---hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH--------HHHHHHHHHH
Confidence 8999 99999999999999944321 1 112234445555666677655 3555555555
Q ss_pred HcCCCCHHH-----------------------------------------------------------------------
Q 036703 201 RKNPMNYDT----------------------------------------------------------------------- 209 (365)
Q Consensus 201 ~~~p~~~~~----------------------------------------------------------------------- 209 (365)
+.+|.+...
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 544432211
Q ss_pred ---------HHH---HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 036703 210 ---------WFD---YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277 (365)
Q Consensus 210 ---------~~~---~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 277 (365)
.+. ......+...+.+|..++....+..|... ..+.+..+++. ..+|+++.|++++...
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s--------~~v~L~~aQl~-is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS--------KVVLLLRAQLK-ISQGNPEVALEILSLF 402 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh--------HHHHHHHHHHH-HhcCCHHHHHHHHHHH
Confidence 000 00000111134445555555555555542 22555566665 6899999999999944
Q ss_pred Hhcc-ccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhC-------cchHHHHHHHHHHHhhccchhHHHHHHH
Q 036703 278 FIFY-FSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS-------PENCYAWSKYTELEKSLDETERARAIFE 349 (365)
Q Consensus 278 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 349 (365)
+..- ..+..+-..|.+...+..++.+.++.+.|..++..++..- +....+|...+.+..+.|+.++|..+++
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 4220 0000000226666777778888888888888888887652 2234577788899999999999999999
Q ss_pred HHhcCcCCCC
Q 036703 350 LAIAQPILDL 359 (365)
Q Consensus 350 ~a~~~~~~~~ 359 (365)
+.++.+|.|.
T Consensus 483 el~k~n~~d~ 492 (652)
T KOG2376|consen 483 ELVKFNPNDT 492 (652)
T ss_pred HHHHhCCchH
Confidence 9999888553
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.76 E-value=3.1e-15 Score=128.18 Aligned_cols=259 Identities=14% Similarity=0.172 Sum_probs=199.7
Q ss_pred CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh---
Q 036703 50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF--- 117 (365)
Q Consensus 50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 117 (365)
.|. ..+...++..|...|+++.|...++++++. +|.-......+|.+|...+++.+|..+|++|+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 444 455666899999999999999999999998 67445555669999999999999999999999872
Q ss_pred hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHH
Q 036703 118 LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYE 197 (365)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 197 (365)
.+.+++....++.+++..|. ..|++++|..++++++.+. +
T Consensus 275 ~G~~h~~va~~l~nLa~ly~---~~GKf~EA~~~~e~Al~I~-------------------------------------~ 314 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYY---KQGKFAEAEEYCERALEIY-------------------------------------E 314 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHh---ccCChHHHHHHHHHHHHHH-------------------------------------H
Confidence 23446778899999999999 9999999999999887532 1
Q ss_pred HHHH-cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHH
Q 036703 198 DGVR-KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP---PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDV 273 (365)
Q Consensus 198 ~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (365)
+.+. ..|.-...+..++.++...+++++|..+++++++..- ...+. ....+..+++..+ ..+|++++|.++
T Consensus 315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~----~~a~~~~nl~~l~-~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV----NLAKIYANLAELY-LKMGKYKEAEEL 389 (508)
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch----HHHHHHHHHHHHH-HHhcchhHHHHH
Confidence 1111 1112234566677788889999999999999887632 21110 1134777888888 699999999999
Q ss_pred HHHHHhccccCCCc-chh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh-------CcchHHHHHHHHHHHhhccchhHH
Q 036703 274 YRTLFIFYFSFSPR-MEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW-------SPENCYAWSKYTELEKSLDETERA 344 (365)
Q Consensus 274 ~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~A 344 (365)
|++++........- -+. ......++..+.+.+.+.+|...|.++..+ .|+....+.+++.+|..+|+++.|
T Consensus 390 ~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 390 YKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred HHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 99999884221110 022 455677888889999999999999998765 345567889999999999999999
Q ss_pred HHHHHHHhc
Q 036703 345 RAIFELAIA 353 (365)
Q Consensus 345 ~~~~~~a~~ 353 (365)
.++-++++.
T Consensus 470 ~~~~~~~~~ 478 (508)
T KOG1840|consen 470 EELEEKVLN 478 (508)
T ss_pred HHHHHHHHH
Confidence 999999873
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.75 E-value=2.4e-16 Score=139.28 Aligned_cols=339 Identities=12% Similarity=0.112 Sum_probs=236.7
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
..|...|-++++++|+-..+|..+|.+|....+...|.+.|.+|.+++|. ...|-..++.+.+..+.+.|..+.-++-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 46788899999999999999999999999888999999999999999999 78999999999999999999999766666
Q ss_pred hCCc--chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 82 CHPY--NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 82 ~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
..|- ....|...|-.|...++...|+.-|+.+++. .|.+ ...|..+|..|. +.|++..|+++|.++....
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~-dPkD----~n~W~gLGeAY~---~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT-DPKD----YNLWLGLGEAYP---ESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC-Cchh----HHHHHHHHHHHH---hcCceehHHHhhhhhHhcC
Confidence 6663 2456778889999999999999999999999 8888 999999999999 9999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHcCCchhhhH---------------------H------------HHHHHHHHHHHHHHcC---
Q 036703 160 PKGRAEDLYRKFLAFEKQYGDREGIED---------------------A------------IAGKMRLQYEDGVRKN--- 203 (365)
Q Consensus 160 p~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~------------~~~~a~~~~~~~l~~~--- 203 (365)
|.+....+..+ .++...|.+.+.-+ . ...++...+++.++.+
T Consensus 627 P~s~y~~fk~A--~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 627 PLSKYGRFKEA--VMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred cHhHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 98643333322 23334443332110 0 1123444444444421
Q ss_pred -----CCCHHHHHHHHHHHHH--hCCHHHH----HHHHHHHHhc---CCCchhhhH-HHH---------hHHHHHHHHHH
Q 036703 204 -----PMNYDTWFDYIRLEER--VGNQERV----REVYERAIAN---VPPAEEKRY-WQR---------YIYLWINYALY 259 (365)
Q Consensus 204 -----p~~~~~~~~~~~~~~~--~~~~~~A----~~~~~~~~~~---~p~~~~~~~-~~~---------~~~~~~~~~~~ 259 (365)
-++.-.|..+++...- .-.++.. ..++..-+.. .|.+.-..+ ... ....|.++|.-
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 1122234333332110 0000010 1111110000 111110000 000 01133333322
Q ss_pred H-----hh--ccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHH
Q 036703 260 K-----EV--DAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY 331 (365)
Q Consensus 260 ~-----~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 331 (365)
+ .. .+.+...|+..++++++.. .+ ..+|..+|.+ ...|++.-|..+|-+.+...|.+.-.|.++
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-------ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-------ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-------hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 1 11 1223347899999999986 33 7788888887 556899999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703 332 TELEKSLDETERARAIFELAIAQPILDL 359 (365)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 359 (365)
+.+.....+++.|...|.++..++|.+.
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNL 884 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhh
Confidence 9999999999999999999999999653
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.75 E-value=5.4e-14 Score=119.44 Aligned_cols=328 Identities=13% Similarity=0.083 Sum_probs=217.0
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
-++|....+.+++.+|.+...|..+|-++....++++|++.|..|+...|+ ..+|..++-+..+.++++.....-.+.+
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL 136 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL 136 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 367888999999999999999999999999999999999999999999999 7999999999999999999999999999
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhh---cCC-hhhHHHHHHHH------------------------
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL---ADD-HDEAEQLFVAF------------------------ 132 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~-~~~~~~~~~~~------------------------ 132 (365)
+..|.....|+.++..+...|++..|..+.+...+. . |+. ...........
T Consensus 137 ql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t-~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i 215 (700)
T KOG1156|consen 137 QLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT-QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI 215 (700)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH
Confidence 999999999999999999999999999998888776 4 222 01111122222
Q ss_pred ----------HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHH-HHHHHHHH
Q 036703 133 ----------AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMR-LQYEDGVR 201 (365)
Q Consensus 133 ----------~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~l~ 201 (365)
+.++. ..+++++|..+|...+..+|++ ...+..+....-...+.. ++. .+|...-+
T Consensus 216 ~Dkla~~e~ka~l~~---kl~~lEeA~~~y~~Ll~rnPdn--~~Yy~~l~~~lgk~~d~~--------~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 216 VDKLAFEETKADLLM---KLGQLEEAVKVYRRLLERNPDN--LDYYEGLEKALGKIKDML--------EALKALYAILSE 282 (700)
T ss_pred HHHHHHhhhHHHHHH---HHhhHHhHHHHHHHHHhhCchh--HHHHHHHHHHHHHHhhhH--------HHHHHHHHHHhh
Confidence 23333 5555555666665555555554 233333322221010000 122 33444333
Q ss_pred cCCCCHHHHHHHHHHH----------------HHh-------------CCHHHHHHHHHHHH-------hcC---C-Cch
Q 036703 202 KNPMNYDTWFDYIRLE----------------ERV-------------GNQERVREVYERAI-------ANV---P-PAE 241 (365)
Q Consensus 202 ~~p~~~~~~~~~~~~~----------------~~~-------------~~~~~A~~~~~~~~-------~~~---p-~~~ 241 (365)
..|........=..+. .+. .++.+.. +.++.+ ... + .+.
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccc
Confidence 3333321110000000 000 0100000 111111 000 0 000
Q ss_pred hh-hHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHh
Q 036703 242 EK-RYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLE 319 (365)
Q Consensus 242 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 319 (365)
.. ..-...+.....+++.+ -..|+++.|...+..|+... |. ++.|..-+.++...|+++.|..+++.+.+
T Consensus 362 ~~~E~PttllWt~y~laqh~-D~~g~~~~A~~yId~AIdHT-------PTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHY-DKLGDYEVALEYIDLAIDHT-------PTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred cccCCchHHHHHHHHHHHHH-HHcccHHHHHHHHHHHhccC-------chHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 00 00000122233345555 37899999999999999988 66 88899999999999999999999999999
Q ss_pred hCcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 320 WSPENCYAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 320 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
+|-.+.-+-...+....+.++.++|.++..+--
T Consensus 434 lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 434 LDTADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred ccchhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 987666666678889999999999988876543
No 87
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.3e-16 Score=123.28 Aligned_cols=281 Identities=11% Similarity=0.025 Sum_probs=219.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE 136 (365)
Q Consensus 57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
...+..+.+..+|..|+..|..|+...|++...|...+..++..|++++|..-.+..++. .|.. +......++++
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~-kd~~----~k~~~r~~~c~ 127 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL-KDGF----SKGQLREGQCH 127 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec-CCCc----cccccchhhhh
Confidence 344555667778889999999999999999999999999999999999999999888888 6665 55666666666
Q ss_pred HhccccchhHHHHHHHHHH------------hccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH
Q 036703 137 EMGCNCKETDRARCIYKFA------------LDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV 200 (365)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~------------l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 200 (365)
. ..++..+|.+.|+.. -+..|... ....-..-+.+....|+.+ .|...--..+
T Consensus 128 ~---a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~--------~a~~ea~~il 196 (486)
T KOG0550|consen 128 L---ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD--------EAQSEAIDIL 196 (486)
T ss_pred h---hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch--------hHHHHHHHHH
Confidence 6 666666666554421 11112111 0111111134444556655 5777778889
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhH---HHHhHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 036703 201 RKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRY---WQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277 (365)
Q Consensus 201 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 277 (365)
++++.+.++....+.++...++.+.|+..|++++..+|++..... --.-+..|..-+.-. ...|++..|.+.|..+
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~-fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA-FKNGNYRKAYECYTEA 275 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH-hhccchhHHHHHHHHh
Confidence 999999999999999999999999999999999999998754321 112244566666664 5899999999999999
Q ss_pred HhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 278 FIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
|.++|+... |...+|.+.+.+..+.|+..+|+.-.+.+++++|....++...+++++..+++++|.+.|+++++...
T Consensus 276 l~idP~n~~--~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 276 LNIDPSNKK--TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hcCCccccc--hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999987654 55788889999999999999999999999999999999999999999999999999999999998775
No 88
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=2.4e-13 Score=109.30 Aligned_cols=300 Identities=14% Similarity=0.089 Sum_probs=229.3
Q ss_pred HHHhcCChhHHHHHHHHHHhhCCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-chHHHHHHHHHHHhhcchHHH
Q 036703 29 MEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLVQCHPY-NLSAWINFADFEMKMGEVDRA 106 (365)
Q Consensus 29 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A 106 (365)
.-...|++.+|.+...++-+..+.+ -.++.-+......||.+.+-.++.++-+..++ ........+.+....|+++.|
T Consensus 93 ~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 93 LKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 3345799999999999988877774 55666678888999999999999999998443 566778889999999999999
Q ss_pred HHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch--hHHHHH-HHHHHHHHcCCchh
Q 036703 107 RNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR--AEDLYR-KFLAFEKQYGDREG 183 (365)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~-~~~~~~~~~~~~~~ 183 (365)
+....++++. .|.+ +.+.....++|. ..|++.+...++.+.-+..--++ ...+-. .+..+..+..+.+.
T Consensus 173 ~~~v~~ll~~-~pr~----~~vlrLa~r~y~---~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 173 RENVDQLLEM-TPRH----PEVLRLALRAYI---RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred HHHHHHHHHh-CcCC----hHHHHHHHHHHH---HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999 9988 999999999999 99999999999988766432221 111111 11222223333322
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703 184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD 263 (365)
Q Consensus 184 ~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
.+ .-....+..-+.-.+++.+-..++.-+...|+.++|.++.+.+++..-+.. +.. +... ..
T Consensus 245 ~~-----gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----------L~~-~~~~--l~ 306 (400)
T COG3071 245 SE-----GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----------LCR-LIPR--LR 306 (400)
T ss_pred ch-----HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----------HHH-HHhh--cC
Confidence 11 111222222222234578888899999999999999999999999865542 222 2222 47
Q ss_pred cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhH
Q 036703 264 AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETER 343 (365)
Q Consensus 264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 343 (365)
.+++..-++..++.++.+|+. |.++..+|.++.+.+.+.+|...|+.+++..| +..-|..++..+...|+..+
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPED------PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEE 379 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHH
Confidence 899999999999999998432 68899999999999999999999999999988 77888999999999999999
Q ss_pred HHHHHHHHhcCc-CCCCCc
Q 036703 344 ARAIFELAIAQP-ILDLPE 361 (365)
Q Consensus 344 A~~~~~~a~~~~-~~~~p~ 361 (365)
|..+++.++.+. +++.|.
T Consensus 380 A~~~r~e~L~~~~~~~~~s 398 (400)
T COG3071 380 AEQVRREALLLTRQPNLPS 398 (400)
T ss_pred HHHHHHHHHHHhcCCCCcc
Confidence 999999998554 224443
No 89
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.71 E-value=5.8e-14 Score=118.90 Aligned_cols=320 Identities=20% Similarity=0.312 Sum_probs=186.9
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 036703 4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKL-RYNEVQRARHIFERLVQ 81 (365)
Q Consensus 4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~ 81 (365)
.++..|...|...|.....|..+|....+.|..+.+.++|++++...|- ..+|..|..+.. ..|+.+..+..|++|..
T Consensus 63 ~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~ 142 (577)
T KOG1258|consen 63 ALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKS 142 (577)
T ss_pred HHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3455555555556665555666666666666666666666666655555 455655554443 23455555555665555
Q ss_pred hCCc---chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc-----cchhHHHHHHHH
Q 036703 82 CHPY---NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN-----CKETDRARCIYK 153 (365)
Q Consensus 82 ~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~ 153 (365)
.... +..+|-.+..+...+++......+|++.++. .-.. ....+..+-+... . ....+++...=.
T Consensus 143 ~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-P~~~---~~~~f~~f~~~l~---~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 143 YVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-PLHQ---LNRHFDRFKQLLN---QNEEKILLSIDELIQLRS 215 (577)
T ss_pred hcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-hhhH---hHHHHHHHHHHHh---cCChhhhcCHHHHHHHhh
Confidence 4432 3455666666555555566666666665555 1110 0111112222211 1 111222222111
Q ss_pred HHhc--cCCCc-hhHHHHHHHHHHHHHcCCc-hhhh---HHH-------------HHHHHHHHHHHHHc-----CCC---
Q 036703 154 FALD--RIPKG-RAEDLYRKFLAFEKQYGDR-EGIE---DAI-------------AGKMRLQYEDGVRK-----NPM--- 205 (365)
Q Consensus 154 ~~l~--~~p~~-~~~~~~~~~~~~~~~~~~~-~~~~---~~~-------------~~~a~~~~~~~l~~-----~p~--- 205 (365)
.... ..+.. ...+.+...+..-...+.. +... ... ....+..++..+.. .|.
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a 295 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA 295 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH
Confidence 1110 00000 0001111111000000000 0000 000 01122333333331 222
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC
Q 036703 206 NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285 (365)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 285 (365)
+...|..+..+....|+++.+...|++++-.+..- ..+|+.|+.+++ ..|+.+-|..++.++.+...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y---------~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~--- 362 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY---------DEFWIKYARWME-SSGDVSLANNVLARACKIHV--- 362 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh---------HHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcC---
Confidence 34679999999999999999999999998877664 459999999996 77999999999999988853
Q ss_pred Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHH
Q 036703 286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARA 346 (365)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 346 (365)
|+ +.+...++.++...|++..|+.++++..+..|+.+.+-...+.++.+.|+.+.+..
T Consensus 363 ---k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 363 ---KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred ---CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 33 77888889999999999999999999999889999999999999999999998884
No 90
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.2e-15 Score=119.07 Aligned_cols=269 Identities=12% Similarity=0.045 Sum_probs=152.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHH
Q 036703 28 RMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRA 106 (365)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A 106 (365)
..+.+..++..|+..+..|++.+|+ ...|...+..+...|+++.|.--.++.+++.|.........++++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 3344444444455555555555554 344444444444445555555444444444444444444444444444444333
Q ss_pred HHHHHHH------------HhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703 107 RNVYECA------------VEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL 172 (365)
Q Consensus 107 ~~~~~~a------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 172 (365)
...++.. -.. .|.. .+.-...-..-+.++. ..|++++|...--..++.++.+....+.. +
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~-~~s~s~~pac~~a~~lka~cl~---~~~~~~~a~~ea~~ilkld~~n~~al~vr--g 210 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKL-APSHSREPACFKAKLLKAECLA---FLGDYDEAQSEAIDILKLDATNAEALYVR--G 210 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcc-cccccCCchhhHHHHhhhhhhh---hcccchhHHHHHHHHHhcccchhHHHHhc--c
Confidence 3322211 011 1111 0111222233345555 55666666666666665555542211111 1
Q ss_pred HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY------------DTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
....-.++ .++++..|+++|+.+|++. ..|..-|.-..+.|++..|.+.|..+|.++|++
T Consensus 211 ~~~yy~~~--------~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 211 LCLYYNDN--------ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred cccccccc--------hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 11111222 1245666666666665543 456667777788899999999999999999987
Q ss_pred hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHh
Q 036703 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLE 319 (365)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 319 (365)
... ...++.+.+... .+.|+..+|+.-...+++++ |. ...+..-+.++...+++++|.+.|+++++
T Consensus 283 ~~~-----naklY~nra~v~-~rLgrl~eaisdc~~Al~iD-------~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 283 KKT-----NAKLYGNRALVN-IRLGRLREAISDCNEALKID-------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred cch-----hHHHHHHhHhhh-cccCCchhhhhhhhhhhhcC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 542 134666677775 68899999999999999887 44 55667778888888999999999999988
Q ss_pred hCcc
Q 036703 320 WSPE 323 (365)
Q Consensus 320 ~~p~ 323 (365)
...+
T Consensus 350 ~~~s 353 (486)
T KOG0550|consen 350 LEKD 353 (486)
T ss_pred hccc
Confidence 7654
No 91
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.70 E-value=1.1e-13 Score=112.92 Aligned_cols=337 Identities=17% Similarity=0.270 Sum_probs=240.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL 87 (365)
Q Consensus 9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 87 (365)
++.-++.+|++...|+.+...+..+|..++-++.+++...-.|- +.+|..+..-....+++.....+|.+++...- +.
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~l 109 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NL 109 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cH
Confidence 45567789999999999999999999999999999999988887 89999999999999999999999999999877 69
Q ss_pred HHHHHHHHHHHhhcch------HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh------ccccchhHHHHHHHHHH
Q 036703 88 SAWINFADFEMKMGEV------DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM------GCNCKETDRARCIYKFA 155 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~ 155 (365)
++|..+...-.+.++. -.-.+.|+-.+.. ..-+ +.+...|..++.+... ...+.+.+..+..|.++
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~-~~~e-~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGC-AIFE-PQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhc-cccc-ccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 9999998877765421 1223444444442 2111 2348899999988762 12567888999999999
Q ss_pred hccCCCchhHHHHHHHHHHHHHcCCch---------hh-----------h------------------------------
Q 036703 156 LDRIPKGRAEDLYRKFLAFEKQYGDRE---------GI-----------E------------------------------ 185 (365)
Q Consensus 156 l~~~p~~~~~~~~~~~~~~~~~~~~~~---------~~-----------~------------------------------ 185 (365)
+.. |-.....+|..|-.++...+... .+ .
T Consensus 188 l~t-P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 188 LQT-PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HcC-ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 975 44445678888876665432110 00 0
Q ss_pred --------------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch----------
Q 036703 186 --------------DAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE---------- 241 (365)
Q Consensus 186 --------------~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---------- 241 (365)
+...++-.-+|++++...|-.+++|+.+.......++-++|....++++..+|.-.
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~ 346 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELV 346 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhc
Confidence 00012233345667777777778888888777777787888777777777666510
Q ss_pred --hhhH----------------------------------------HHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703 242 --EKRY----------------------------------------WQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI 279 (365)
Q Consensus 242 --~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 279 (365)
...+ -+.+..+|+.+.... .+....+.|+.+|-++-+
T Consensus 347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v-~r~~Gl~aaR~~F~k~rk 425 (660)
T COG5107 347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYV-LRKRGLEAARKLFIKLRK 425 (660)
T ss_pred ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHH-HHHhhHHHHHHHHHHHhc
Confidence 0000 012334555555554 466667888888888877
Q ss_pred ccccCCCcchhHHHHHHHHHHHH-HhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 280 FYFSFSPRMEERRIFKKYIEMEL-CLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
..... +++|..-+.++. ..|+..-|-.+|+-.+...|+++..-..+..++...|+.+.|+.+|+.++....
T Consensus 426 ~~~~~------h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 426 EGIVG------HHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred cCCCC------cceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 63211 334444444433 468999999999999999999999999999999999999999999998876544
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=1.5e-15 Score=110.51 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=116.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP 84 (365)
Q Consensus 6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 84 (365)
..+|+++++.+|++ +..+|..+...|++++|...|++++..+|. ...|..+|.++...|++++|...|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46899999999985 667899999999999999999999999999 89999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
+++..+..+|.++...|++++|+..|+++++. .|++ +..|...+.+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-~p~~----~~~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-SYAD----ASWSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----hHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9988 888887777655
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=9.7e-15 Score=116.97 Aligned_cols=188 Identities=12% Similarity=0.057 Sum_probs=151.2
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH---
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS--- 88 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--- 88 (365)
++..+..++..|..+...|++++|+..|++++..+|+ ..+|..++.++...|++++|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456788999999999999999999999999999997 268899999999999999999999999999998776
Q ss_pred HHHHHHHHHHhh--------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 89 AWINFADFEMKM--------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 89 ~~~~~~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
++..+|.++... |++++|++.|++++.. .|.+ ...+..+..+.. ..+..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~----~~~~~a~~~~~~---~~~~~--------------- 165 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNS----EYAPDAKKRMDY---LRNRL--------------- 165 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCC----hhHHHHHHHHHH---HHHHH---------------
Confidence 688888888876 8899999999999999 9987 444433322222 11100
Q ss_pred CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703 161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN---YDTWFDYIRLEERVGNQERVREVYERAIANV 237 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 237 (365)
.......+.++...|+.. .|+..|++++...|++ ..++..++..+...|++++|..+++......
T Consensus 166 ----~~~~~~~a~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 166 ----AGKELYVARFYLKRGAYV--------AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred ----HHHHHHHHHHHHHcCChH--------HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 111234455666778755 6889999999987765 5799999999999999999999988887766
Q ss_pred C
Q 036703 238 P 238 (365)
Q Consensus 238 p 238 (365)
|
T Consensus 234 ~ 234 (235)
T TIGR03302 234 P 234 (235)
T ss_pred C
Confidence 5
No 94
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.69 E-value=1.3e-12 Score=110.82 Aligned_cols=309 Identities=15% Similarity=0.232 Sum_probs=212.1
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHh-cCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEEN-LGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIF 76 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~ 76 (365)
.+.+.++|++++...|-+.++|..|...... .|+.+.-+..|++|+..... ...|-.++.+...+++......+|
T Consensus 95 ~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iy 174 (577)
T KOG1258|consen 95 AENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIY 174 (577)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHH
Confidence 4678999999999999999999998877664 57888899999999988765 689999999999999999999999
Q ss_pred HHHHHhCCcchHH-HHHHHHHHHh-----h----------------------------------------cchHHHHHHH
Q 036703 77 ERLVQCHPYNLSA-WINFADFEMK-----M----------------------------------------GEVDRARNVY 110 (365)
Q Consensus 77 ~~~l~~~p~~~~~-~~~~~~~~~~-----~----------------------------------------~~~~~A~~~~ 110 (365)
++.++.--..... +..+-+.... . +..+++....
T Consensus 175 eRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l 254 (577)
T KOG1258|consen 175 ERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTIL 254 (577)
T ss_pred HHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHH
Confidence 9999843211111 1111111100 0 0111222111
Q ss_pred HHHHhh------------------------h----hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 111 ECAVEI------------------------F----LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 111 ~~a~~~------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.+.+.. + .|. .......|..+..+.. ..|+++...-.|++++-.+..-
T Consensus 255 ~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl-~~aql~nw~~yLdf~i---~~g~~~~~~~l~ercli~cA~Y 330 (577)
T KOG1258|consen 255 KRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL-DQAQLKNWRYYLDFEI---TLGDFSRVFILFERCLIPCALY 330 (577)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcc-cHHHHHHHHHHhhhhh---hcccHHHHHHHHHHHHhHHhhh
Confidence 111111 0 111 1233456777777777 8888888888888887655543
Q ss_pred hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703 163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR-KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 241 (365)
..+|..|+.+....|+.. .+..++.++.+ ..|+.+.+....+.+...+|++..|+.+++++....|.-
T Consensus 331 --~efWiky~~~m~~~~~~~--------~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~- 399 (577)
T KOG1258|consen 331 --DEFWIKYARWMESSGDVS--------LANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL- 399 (577)
T ss_pred --HHHHHHHHHHHHHcCchh--------HHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-
Confidence 578888888887777644 45555666555 456667777888888888888888888888888887664
Q ss_pred hhhHHHHhHHHHHHHHHHHhhccCChhHHHH---HHHHHHhccccCCCcchh--HHHHHHHHHHHH-HhCCCccHHHHHH
Q 036703 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRD---VYRTLFIFYFSFSPRMEE--RRIFKKYIEMEL-CLGNIDPCRKLYE 315 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~A~~~~~ 315 (365)
+.+-+..+.++ ...|+.+.+.. ++.....-..+ +. +..+..++.+.. -.++.+.|+..+.
T Consensus 400 --------v~~~l~~~~~e-~r~~~~~~~~~~~~l~s~~~~~~~~-----~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~ 465 (577)
T KOG1258|consen 400 --------VEVVLRKINWE-RRKGNLEDANYKNELYSSIYEGKEN-----NGILEKLYVKFARLRYKIREDADLARIILL 465 (577)
T ss_pred --------hhhHHHHHhHH-HHhcchhhhhHHHHHHHHhcccccC-----cchhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33555566664 57777777773 33333222111 11 445566666554 4678899999999
Q ss_pred HHHhhCcchHHHHHHHHHHHhhcc
Q 036703 316 KYLEWSPENCYAWSKYTELEKSLD 339 (365)
Q Consensus 316 ~al~~~p~~~~~~~~~~~~~~~~g 339 (365)
++++..|++-.+|..+..++...+
T Consensus 466 ~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 466 EANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhhhcCCccHHHHHHHHHHHHhCC
Confidence 999999999999999999888776
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.68 E-value=7.8e-13 Score=114.90 Aligned_cols=279 Identities=15% Similarity=0.164 Sum_probs=192.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
+++..-.+.++...|++++|++.++..-..-++ .......|.++.+.|++++|..+|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 345555667777788888888888777766666 4555667788888888888888888888888888877777777663
Q ss_pred hh-----cchHHHHHHHHHHHhhhhcCC------------hhhH----------------HHHHHHHHHHHHhccccchh
Q 036703 99 KM-----GEVDRARNVYECAVEIFLADD------------HDEA----------------EQLFVAFAKFEEMGCNCKET 145 (365)
Q Consensus 99 ~~-----~~~~~A~~~~~~a~~~~~~~~------------~~~~----------------~~~~~~~~~~~~~~~~~~~~ 145 (365)
.. ...+.-..+|+..... .|.. ...+ |.++..+-.+|. .....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~-yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~~K~ 159 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEK-YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK---DPEKA 159 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHh-CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc---ChhHH
Confidence 22 2456666777777666 6543 0011 222333333333 33333
Q ss_pred HHHHHHHHHHhc---cC----------CCchhHHHHHH--HHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 036703 146 DRARCIYKFALD---RI----------PKGRAEDLYRK--FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW 210 (365)
Q Consensus 146 ~~A~~~~~~~l~---~~----------p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~ 210 (365)
.-...++..... .. ...+...+|.. +++.+...|+.+ +|...+++++...|..++.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~--------~Al~~Id~aI~htPt~~ely 231 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYE--------KALEYIDKAIEHTPTLVELY 231 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHhcCCCcHHHH
Confidence 333333333221 11 11123445644 477777888855 79999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc-CCCcch
Q 036703 211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS-FSPRME 289 (365)
Q Consensus 211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~ 289 (365)
...|.++...|++.+|...++.+...++.+. .+-...+.++ ++.|++++|.+.+....+...+ ...+ -
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR---------yiNsK~aKy~-LRa~~~e~A~~~~~~Ftr~~~~~~~~L-~ 300 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADR---------YINSKCAKYL-LRAGRIEEAEKTASLFTREDVDPLSNL-N 300 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhH---------HHHHHHHHHH-HHCCCHHHHHHHHHhhcCCCCCcccCH-H
Confidence 9999999999999999999999999998874 2555666766 7999999999999888766421 1111 1
Q ss_pred h-HHHH--HHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703 290 E-RRIF--KKYIEMELCLGNIDPCRKLYEKYLEWS 321 (365)
Q Consensus 290 ~-~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~ 321 (365)
+ .-+| ...|..+.+.|++..|++.|..+.+..
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 2233 456788899999999999999998764
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.68 E-value=4.4e-13 Score=114.54 Aligned_cols=295 Identities=13% Similarity=-0.026 Sum_probs=202.2
Q ss_pred hhhHHHHHHHHHHhCCCc---hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH----hccHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRV---DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR----YNEVQRAR 73 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~----~~~~~~A~ 73 (365)
.+.+...+.++.+..|.+ .......+......|++++|...++++++.+|+ ...+.. +..+.. .+....+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~ 100 (355)
T cd05804 22 RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVA 100 (355)
T ss_pred cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHH
Confidence 455677788888777755 445666788899999999999999999999999 445542 333333 34455555
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703 74 HIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153 (365)
Q Consensus 74 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 153 (365)
..+......+|........++.++...|++++|...++++++. .|.+ ...+..++.++. ..|++++|+..++
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~p~~----~~~~~~la~i~~---~~g~~~eA~~~l~ 172 (355)
T cd05804 101 RVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-NPDD----AWAVHAVAHVLE---MQGRFKEGIAFME 172 (355)
T ss_pred HHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----cHHHHHHHHHHH---HcCCHHHHHHHHH
Confidence 5555544566767777788899999999999999999999999 9988 889999999999 9999999999999
Q ss_pred HHhccCCCch--hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-HHHH-HH---HHHHHHhCCHHHH
Q 036703 154 FALDRIPKGR--AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWF-DY---IRLEERVGNQERV 226 (365)
Q Consensus 154 ~~l~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~~~~-~~---~~~~~~~~~~~~A 226 (365)
+++...|... ....|..++.++...|+.+ .|+..|++++...|... .... .. .......|....+
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYE--------AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCHH--------HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 9999876432 2345667888888999866 69999999886666221 1111 11 1222333433333
Q ss_pred HHH---HHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc---CCCcchhHHHHHHHHHH
Q 036703 227 REV---YERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS---FSPRMEERRIFKKYIEM 300 (365)
Q Consensus 227 ~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~ 300 (365)
... ........|.... .......+... ...|+.+.|...++........ ....+....+....+..
T Consensus 245 ~~w~~~~~~~~~~~~~~~~-------~~~~~~~a~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGL-------AFNDLHAALAL-AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred HHHHHHHHHHHhhcCcccc-------hHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 322 2222111122110 11222344444 5788999999999887665322 11111124555667777
Q ss_pred HHHhCCCccHHHHHHHHHhhC
Q 036703 301 ELCLGNIDPCRKLYEKYLEWS 321 (365)
Q Consensus 301 ~~~~~~~~~A~~~~~~al~~~ 321 (365)
+...|++++|...+..++...
T Consensus 317 ~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 317 AFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 889999999999999998753
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=1.5e-14 Score=115.89 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=136.3
Q ss_pred ChhhHHHHHHHHHHhCCCch---HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHHh-------
Q 036703 1 FIDHGRNAWDRVVTLSPRVD---QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLRY------- 66 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~~------- 66 (365)
+++.|...|++++..+|+++ .+|..+|.++...|++++|+..|+++++.+|+ . .+|..++.++...
T Consensus 48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~ 127 (235)
T TIGR03302 48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRD 127 (235)
T ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCC
Confidence 57899999999999999875 67899999999999999999999999999997 2 3688888888765
Q ss_pred -ccHHHHHHHHHHHHHhCCcchHHH-----------------HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHH
Q 036703 67 -NEVQRARHIFERLVQCHPYNLSAW-----------------INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQL 128 (365)
Q Consensus 67 -~~~~~A~~~~~~~l~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 128 (365)
|++++|...|++++..+|++...+ ..+|.++...|++.+|+..|+++++. .|+. +..+.+
T Consensus 128 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~a 205 (235)
T TIGR03302 128 QTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN-YPDT-PATEEA 205 (235)
T ss_pred HHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-CCCC-cchHHH
Confidence 889999999999999999886543 35678888999999999999999999 8875 556789
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 129 FVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
+..++..+. ..|++++|..+++......|
T Consensus 206 ~~~l~~~~~---~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 206 LARLVEAYL---KLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHhhCC
Confidence 999999999 99999999999988776655
No 98
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3.1e-12 Score=105.89 Aligned_cols=341 Identities=17% Similarity=0.223 Sum_probs=213.3
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc-HHHHHHHHHHHHH
Q 036703 4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE-VQRARHIFERLVQ 81 (365)
Q Consensus 4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~ 81 (365)
+...+|++++...|.+..+|..++.+..+.+.+.+...+|.+++..+|+ +.+|...|..+...+. .+.|+.+|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 3456899999999999999999999999999999999999999999999 8999999988777664 9999999999999
Q ss_pred hCCcchHHHHHHHHHHHhhc---------------ch----HHHHH----------------------HH---HHHHhhh
Q 036703 82 CHPYNLSAWINFADFEMKMG---------------EV----DRARN----------------------VY---ECAVEIF 117 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~---------------~~----~~A~~----------------------~~---~~a~~~~ 117 (365)
.+|+++.+|..+-.+....- +. ++... +. +.+-+.+
T Consensus 169 ~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~ 248 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQ 248 (568)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHH
Confidence 99999999998877654210 00 00000 00 0000000
Q ss_pred ------hcCChhhHHHHHHHHHHHHH----h----c--------cccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703 118 ------LADDHDEAEQLFVAFAKFEE----M----G--------CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175 (365)
Q Consensus 118 ------~~~~~~~~~~~~~~~~~~~~----~----~--------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 175 (365)
....++..+..|..+++-.. . + ...-.-+....+|+.+++..|. ..+|..|+.+.
T Consensus 249 k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t---~sm~e~YI~~~ 325 (568)
T KOG2396|consen 249 KNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPT---ESMWECYITFC 325 (568)
T ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhH---HHHHHHHHHHH
Confidence 00001122444544443222 0 0 0011234566788888887776 35777776655
Q ss_pred HHcCCchhhhHHHHHHHHHHHHHH----------------------------------H-HcCCCCHHHHHHHHHHHHHh
Q 036703 176 KQYGDREGIEDAIAGKMRLQYEDG----------------------------------V-RKNPMNYDTWFDYIRLEERV 220 (365)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~----------------------------------l-~~~p~~~~~~~~~~~~~~~~ 220 (365)
...-.... ...+.....+++.+ . ....++..+|..........
T Consensus 326 lE~~~~~r--~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s 403 (568)
T KOG2396|consen 326 LERFTFLR--GKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIES 403 (568)
T ss_pred HHHHHhhh--hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhh
Confidence 43322110 00111111122221 1 22334555666555554422
Q ss_pred -CCHHHHHHHHHHHHhcCCCchhhhHHHH--------------------------hHHHHHHHHHHHhhccCChhHHHHH
Q 036703 221 -GNQERVREVYERAIANVPPAEEKRYWQR--------------------------YIYLWINYALYKEVDAGDLERTRDV 273 (365)
Q Consensus 221 -~~~~~A~~~~~~~~~~~p~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (365)
.+++--....-..++..+.+.....|.. .+.+-..+..++ .+.|.+..|+..
T Consensus 404 ~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~-~e~~~~~~ark~ 482 (568)
T KOG2396|consen 404 KSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWA-YESGGYKKARKV 482 (568)
T ss_pred cchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHH-HHhcchHHHHHH
Confidence 1222111111111222222211111110 112223344454 477889999999
Q ss_pred HHHHHhccccCCCcchhHHHHHHHHHHHHH--hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHH
Q 036703 274 YRTLFIFYFSFSPRMEERRIFKKYIEMELC--LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351 (365)
Q Consensus 274 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 351 (365)
|.+.....| |...++...++++.. .-+...++++|++++.....++++|..|..++..+|..+.+-.+|.+|
T Consensus 483 y~~l~~lpp------~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 483 YKSLQELPP------FSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHhCCC------ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHH
Confidence 999888853 447788888888753 334889999999999988899999999999999999999999999999
Q ss_pred hcCcC
Q 036703 352 IAQPI 356 (365)
Q Consensus 352 ~~~~~ 356 (365)
++.-.
T Consensus 557 ~ktl~ 561 (568)
T KOG2396|consen 557 MKTLQ 561 (568)
T ss_pred HHhhC
Confidence 98765
No 99
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=3.5e-12 Score=102.74 Aligned_cols=284 Identities=11% Similarity=0.071 Sum_probs=211.7
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
+|.+|.....+.-+..+.....+..-++...+.|+.+.|-.++.++-+..++ ....+..+.+....|+++.|+.-..+
T Consensus 99 ~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ 178 (400)
T COG3071 99 DFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQ 178 (400)
T ss_pred cHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4678888888888878887777888889999999999999999999998555 56677888999999999999999999
Q ss_pred HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH----HHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703 79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE----QLFVAFAKFEEMGCNCKETDRARCIYKF 154 (365)
Q Consensus 79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 154 (365)
++...|.++.+.....++|.+.|++.....+..+..+. .--++++.. .+|..+.+=.. ..+..+.-....+
T Consensus 179 ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~---~~~~~~gL~~~W~- 253 (400)
T COG3071 179 LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQAR---DDNGSEGLKTWWK- 253 (400)
T ss_pred HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHH-
Confidence 99999999999999999999999999999999988876 322211111 12222222111 1222222222222
Q ss_pred HhccCCCch--hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 036703 155 ALDRIPKGR--AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYER 232 (365)
Q Consensus 155 ~l~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 232 (365)
..|... ++.+-..++.-....|+.+ .|.++...+++..-+.. +...++. ...++...-++..++
T Consensus 254 ---~~pr~lr~~p~l~~~~a~~li~l~~~~--------~A~~~i~~~Lk~~~D~~-L~~~~~~--l~~~d~~~l~k~~e~ 319 (400)
T COG3071 254 ---NQPRKLRNDPELVVAYAERLIRLGDHD--------EAQEIIEDALKRQWDPR-LCRLIPR--LRPGDPEPLIKAAEK 319 (400)
T ss_pred ---hccHHhhcChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHhccChh-HHHHHhh--cCCCCchHHHHHHHH
Confidence 222211 2457777887777888766 58888888887654443 2222222 256788888888899
Q ss_pred HHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHH
Q 036703 233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK 312 (365)
Q Consensus 233 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 312 (365)
.++..|+++. ++..+|.++ ...+.+.+|...|+.+++.. |+..-+..++..+.+.|+..+|..
T Consensus 320 ~l~~h~~~p~---------L~~tLG~L~-~k~~~w~kA~~~leaAl~~~-------~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 320 WLKQHPEDPL---------LLSTLGRLA-LKNKLWGKASEALEAALKLR-------PSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHhCCCChh---------HHHHHHHHH-HHhhHHHHHHHHHHHHHhcC-------CChhhHHHHHHHHHHcCChHHHHH
Confidence 9998888864 777788887 68889999999999988887 666777888888889999999999
Q ss_pred HHHHHHhh
Q 036703 313 LYEKYLEW 320 (365)
Q Consensus 313 ~~~~al~~ 320 (365)
+++.++..
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 99888754
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.65 E-value=1.8e-13 Score=117.90 Aligned_cols=220 Identities=18% Similarity=0.165 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
...-..++..+.+.|-...|..+|++. ..|-..+.+|...|+..+|..+..+-++ .|.++..|..+|++...
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC
Confidence 455678999999999999999999987 5788889999999999999999999999 45589999988888776
Q ss_pred hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703 100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 179 (365)
..-+++|.++.+..- ..+...+|.... ++++++++.+.++..++.+|.. ...|+.++....+.+
T Consensus 470 ~s~yEkawElsn~~s-----------arA~r~~~~~~~---~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 470 PSLYEKAWELSNYIS-----------ARAQRSLALLIL---SNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLE 533 (777)
T ss_pred hHHHHHHHHHhhhhh-----------HHHHHhhccccc---cchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHh
Confidence 655555555544332 445556666666 7899999999999999999986 678999888888887
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259 (365)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 259 (365)
+.. .|...|.+++...|++..+|.+++..+...|+-.+|...+.++++.+-.+. .+|.+|...
T Consensus 534 k~q--------~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w---------~iWENymlv 596 (777)
T KOG1128|consen 534 KEQ--------AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW---------QIWENYMLV 596 (777)
T ss_pred hhH--------HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC---------eeeechhhh
Confidence 754 699999999999999999999999999999999999999999999985553 388888888
Q ss_pred HhhccCChhHHHHHHHHHHhcc
Q 036703 260 KEVDAGDLERTRDVYRTLFIFY 281 (365)
Q Consensus 260 ~~~~~~~~~~a~~~~~~a~~~~ 281 (365)
. ...|.+++|++.+.+.+...
T Consensus 597 s-vdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 597 S-VDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred h-hhcccHHHHHHHHHHHHHhh
Confidence 6 69999999999999998873
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.65 E-value=1e-14 Score=111.97 Aligned_cols=119 Identities=8% Similarity=0.120 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHH-HHhcc--HHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFK-LRYNE--VQRARHIFE 77 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~-~~~~~--~~~A~~~~~ 77 (365)
.+++...++++++.+|++...|..+|.++...|++++|+..|++++++.|+ ..++..++.++ ...|+ .++|..+++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999 89999999864 67777 599999999
Q ss_pred HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
++++.+|+++.++..+|..+.+.|++++|+..++++++. .|.+
T Consensus 135 ~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~ 177 (198)
T PRK10370 135 KALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPR 177 (198)
T ss_pred HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Confidence 999999999999999999999999999999999999999 8775
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.3e-12 Score=98.77 Aligned_cols=177 Identities=13% Similarity=0.077 Sum_probs=131.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchH
Q 036703 26 YIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD 104 (365)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 104 (365)
..-.....|..+-|..++.+.-...|. .+.-...|..+...|++++|.++|++.++.+|.+..++..-..+...+|+.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 344445567777788888877777777 5666667777777888888888888888888887777777777777778877
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhh
Q 036703 105 RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGI 184 (365)
Q Consensus 105 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 184 (365)
+|++.+..-++. ++.+ .++|..++.+|. ..|++++|.-.+++.+=..|.+ ..++..+++...-.|..+.
T Consensus 138 ~aIk~ln~YL~~-F~~D----~EAW~eLaeiY~---~~~~f~kA~fClEE~ll~~P~n--~l~f~rlae~~Yt~gg~eN- 206 (289)
T KOG3060|consen 138 EAIKELNEYLDK-FMND----QEAWHELAEIYL---SEGDFEKAAFCLEELLLIQPFN--PLYFQRLAEVLYTQGGAEN- 206 (289)
T ss_pred HHHHHHHHHHHH-hcCc----HHHHHHHHHHHH---hHhHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHH-
Confidence 888888888888 8777 888888888888 8888888888888888777776 4667777777666665443
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 036703 185 EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLE 217 (365)
Q Consensus 185 ~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~ 217 (365)
+..+++.|.++++.+|.+...|+.+..+.
T Consensus 207 ----~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 207 ----LELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred ----HHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 34677888888888887777776665543
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=4.7e-14 Score=102.71 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=107.3
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703 40 RQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA 119 (365)
Q Consensus 40 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 119 (365)
...|+++++.+|+. +..++..+...|++++|...|++++..+|++..+|..+|.++...|++++|+..|++++.. .|
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DA 89 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC
Confidence 46899999999984 5577889999999999999999999999999999999999999999999999999999999 99
Q ss_pred CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.+ +..+..+|.++. ..|++++|+..|+++++..|.+
T Consensus 90 ~~----~~a~~~lg~~l~---~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 90 SH----PEPVYQTGVCLK---MMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CC----cHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC
Confidence 98 999999999999 9999999999999999999987
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=2.4e-12 Score=97.41 Aligned_cols=189 Identities=14% Similarity=0.124 Sum_probs=145.2
Q ss_pred cHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc
Q 036703 68 EVQRARHIFERLVQCHP------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN 141 (365)
Q Consensus 68 ~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (365)
+.++..++....+...+ +--.++-.........|+.+-|..++++.... +|.+ ..+-...|..+. .
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S----~RV~~lkam~lE---a 98 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGS----KRVGKLKAMLLE---A 98 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCC----hhHHHHHHHHHH---H
Confidence 45555555555554333 22233344455556689999999999999999 8888 999999999999 9
Q ss_pred cchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 036703 142 CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG 221 (365)
Q Consensus 142 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 221 (365)
.|.+++|+++|++.++.+|.+ ..++..-+.+....|... .|++.+...++.++.+.++|..++++|...|
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~--~v~~KRKlAilka~GK~l--------~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTD--TVIRKRKLAILKAQGKNL--------EAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred hhchhhHHHHHHHHhccCcch--hHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 999999999999999999987 455666666666777654 5889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703 222 NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY 281 (365)
Q Consensus 222 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 281 (365)
++++|.-++++++-..|.++. .+.++.++.+-.|. ..+..-|+++|.++++..
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l--~f~rlae~~Yt~gg-----~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPL--YFQRLAEVLYTQGG-----AENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHhC
Confidence 999999999999999999863 33333333333222 235677888888888877
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.58 E-value=2e-13 Score=104.80 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=114.8
Q ss_pred cCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH-Hhhcc--hHHHHH
Q 036703 33 LGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE-MKMGE--VDRARN 108 (365)
Q Consensus 33 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~--~~~A~~ 108 (365)
.++.++++..++++++.+|+ ...|..+|.++...|+++.|...|+++++..|+++.++..+|.++ ...|+ .++|+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 45678899999999999999 899999999999999999999999999999999999999999974 67777 599999
Q ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 109 VYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
+++++++. .|++ ..++..+|..+. ..|++++|+..++++++..|...
T Consensus 132 ~l~~al~~-dP~~----~~al~~LA~~~~---~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALAL-DANE----VTALMLLASDAF---MQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHh-CCCC----hhHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999 9998 999999999999 99999999999999999888754
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.58 E-value=3.2e-13 Score=121.60 Aligned_cols=142 Identities=16% Similarity=0.124 Sum_probs=135.5
Q ss_pred HHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH
Q 036703 12 VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW 90 (365)
Q Consensus 12 ~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 90 (365)
..+..|.+++++..+|.+..+.|.+++|...+++++++.|+ ..++..++.++.+.+.+++|+..+++++...|++....
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~ 157 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREI 157 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHH
Confidence 34557999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
..+|.++.+.|++++|..+|++++.. .|++ +.+|..+|..+. ..|+.++|...|+++++...+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~----~~~~~~~a~~l~---~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ-HPEF----ENGYVGWAQSLT---RRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc-CCCc----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999998 8887 999999999999 999999999999999987554
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.57 E-value=2.9e-13 Score=98.43 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=110.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY 85 (365)
Q Consensus 7 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 85 (365)
+.|++++..+|++..+...+|..+...|++++|...|++++..+|. ...|..++.++...|++++|...+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999999999999998 799999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
++..+..+|.++...|++++|...|+++++. .|++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI-CGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cccc
Confidence 9999999999999999999999999999999 8876
No 108
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.6e-11 Score=97.61 Aligned_cols=189 Identities=13% Similarity=-0.004 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHhCCCch-HHHHHHHHHHHhcCChhHHHHHHHHHHhh-CCChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVD-QLWNNYIRMEENLGNVAGARQIFERWMHW-MPDHEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
|..|+.+++-.+..+.... ..-..+|.++...|++++|...|.-+... +|...+|..++.+..-.|.+.+|.++-.++
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 4555666555554432221 22333445566666677666666665542 222566666666666666666666554332
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
|+++-....+-.+-.+.|+-++-..+-+..-.. .+-...++.++. ..-.+.+|+++|++.+..+
T Consensus 118 ----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~---------~EdqLSLAsvhY---mR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 118 ----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---------LEDQLSLASVHY---MRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred ----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---------HHHHHhHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 322222222222222333322222211111111 233344555555 5566777777777777766
Q ss_pred CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 036703 160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRL 216 (365)
Q Consensus 160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~ 216 (365)
|.-.-..++.++.. .+..-++ -+.+++.-.++..|+++-+....+..
T Consensus 182 ~ey~alNVy~ALCy--yKlDYyd--------vsqevl~vYL~q~pdStiA~NLkacn 228 (557)
T KOG3785|consen 182 PEYIALNVYMALCY--YKLDYYD--------VSQEVLKVYLRQFPDSTIAKNLKACN 228 (557)
T ss_pred hhhhhhHHHHHHHH--Hhcchhh--------hHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 65432233333322 2222111 34556666666777776555544443
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.55 E-value=4.7e-12 Score=115.21 Aligned_cols=242 Identities=10% Similarity=0.056 Sum_probs=122.0
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA 94 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 94 (365)
+|.+..+|..++..+...+++++|+.+++.+++.+|+ ...|...|.++.+.+++..+..+ .++...+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~---------- 94 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS---------- 94 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc----------
Confidence 3444555555555555555555555555555555555 34444444444444443333333 2222222
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 174 (365)
...++ .+.+.+-..+.. .|.+ ..++..+|.+|. +.|+.++|...|+++++.+|.+ +.+...++.+
T Consensus 95 ----~~~~~-~~ve~~~~~i~~-~~~~----k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~ 159 (906)
T PRK14720 95 ----QNLKW-AIVEHICDKILL-YGEN----KLALRTLAEAYA---KLNENKKLKGVWERLVKADRDN--PEIVKKLATS 159 (906)
T ss_pred ----cccch-hHHHHHHHHHHh-hhhh----hHHHHHHHHHHH---HcCChHHHHHHHHHHHhcCccc--HHHHHHHHHH
Confidence 11222 222222222222 2332 445555555555 5555555555555555555554 3444444444
Q ss_pred HHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHH
Q 036703 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWI 254 (365)
Q Consensus 175 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 254 (365)
+... + .++|+..+.+++.. +...+++..+.+++++.+..+|.+.+
T Consensus 160 ~ae~-d--------L~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d------------ 204 (906)
T PRK14720 160 YEEE-D--------KEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFD------------ 204 (906)
T ss_pred HHHh-h--------HHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccch------------
Confidence 4433 2 22455555555543 33344555555555555555555432
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHH
Q 036703 255 NYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTEL 334 (365)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 334 (365)
.-..+.++.+.... .. .-.+++.-+-..|...++++++..+++.+++.+|+|..+...++.+
T Consensus 205 --------------~f~~i~~ki~~~~~-~~---~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~ 266 (906)
T PRK14720 205 --------------FFLRIERKVLGHRE-FT---RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF 266 (906)
T ss_pred --------------HHHHHHHHHHhhhc-cc---hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 22222222222210 00 1133444555666778889999999999999999888888888888
Q ss_pred Hhh
Q 036703 335 EKS 337 (365)
Q Consensus 335 ~~~ 337 (365)
+..
T Consensus 267 y~~ 269 (906)
T PRK14720 267 YKE 269 (906)
T ss_pred HHH
Confidence 763
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.55 E-value=2.3e-12 Score=117.21 Aligned_cols=206 Identities=11% Similarity=0.039 Sum_probs=139.9
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
++++|..+.+.+++.+|+...+|+.+|.++.+.++...+.-+ +++...+... ++ .+.+.+...+
T Consensus 46 ~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-------------~~-~~ve~~~~~i 109 (906)
T PRK14720 46 LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-------------KW-AIVEHICDKI 109 (906)
T ss_pred CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-------------ch-hHHHHHHHHH
Confidence 478999999999999999999999999999999998887766 6666555422 22 3444444455
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
...|.+..++..+|.+|.+.|+.++|..+|+++++. .|.+ +.+...+|.++. .. +.++|+.++.+++...-
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D~~n----~~aLNn~AY~~a---e~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-DRDN----PEIVKKLATSYE---EE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-Cccc----HHHHHHHHHHHH---Hh-hHHHHHHHHHHHHHHHH
Confidence 556667778888888888888888888888888888 7777 888888888888 77 88888888888876421
Q ss_pred C----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 036703 161 K----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEERVGNQERVREVYERAI 234 (365)
Q Consensus 161 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 234 (365)
. +....+|..+.......++. -..+.++.+.. ...-...+.-+-..|...+++++++.+++.++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~----------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDF----------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchH----------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 1 11233444443322222211 11111222211 11223455555566777788888888888888
Q ss_pred hcCCCch
Q 036703 235 ANVPPAE 241 (365)
Q Consensus 235 ~~~p~~~ 241 (365)
+..|.+.
T Consensus 251 ~~~~~n~ 257 (906)
T PRK14720 251 EHDNKNN 257 (906)
T ss_pred hcCCcch
Confidence 8888874
No 111
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.54 E-value=2.3e-11 Score=105.88 Aligned_cols=272 Identities=12% Similarity=0.094 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA 133 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (365)
++.+-.+.++...|++++|+..+.+.....++...+....|.++.+.|+.++|..+|...++. +|++ ...+..+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-NPdn----~~Yy~~L~ 79 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-NPDN----YDYYRGLE 79 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCc----HHHHHHHH
Confidence 344556678889999999999999999999988999999999999999999999999999999 9998 77777777
Q ss_pred HHHHhc--cccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 036703 134 KFEEMG--CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWF 211 (365)
Q Consensus 134 ~~~~~~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~ 211 (365)
.+.... ......+....+|++.-...|....+. ... +....|+ . ....+...+...+.. .-+.++.
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~---L~~~~g~--~----F~~~~~~yl~~~l~K--gvPslF~ 147 (517)
T PF12569_consen 80 EALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLP---LDFLEGD--E----FKERLDEYLRPQLRK--GVPSLFS 147 (517)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHhCccccchh-Hhh---cccCCHH--H----HHHHHHHHHHHHHhc--CCchHHH
Confidence 776300 012356777888888877777642110 110 1101111 0 112344444555543 2345555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc---CC----------CchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 036703 212 DYIRLEERVGNQERVREVYERAIAN---VP----------PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF 278 (365)
Q Consensus 212 ~~~~~~~~~~~~~~A~~~~~~~~~~---~p----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~ 278 (365)
.+-.+|....+..-...++...+.. .+ ..+. .++.++..+++.+ ...|++++|++++++++
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~-----~~lw~~~~lAqhy-d~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS-----TLLWTLYFLAQHY-DYLGDYEKALEYIDKAI 221 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCch-----HHHHHHHHHHHHH-HHhCCHHHHHHHHHHHH
Confidence 5555655444444444444443322 10 1111 1233446668887 48999999999999999
Q ss_pred hccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 279 IFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 279 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
... |. ++++..-|.++...|++.+|.+.++.|..+++.+--+-...+....+.|++++|.+++..-...+
T Consensus 222 ~ht-------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 222 EHT-------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred hcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 998 55 88999999999999999999999999999999998888899999999999999999987665443
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.8e-10 Score=97.53 Aligned_cols=297 Identities=14% Similarity=0.134 Sum_probs=200.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703 27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR 105 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 105 (365)
...+...|++++|.+...+.+...|+ ..+...-.-+....+.|+.|..+.++-....- +....+.-+-|+++.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHH
Confidence 45566789999999999999999999 66777777777888999999855444322221 22223688889999999999
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh
Q 036703 106 ARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE 185 (365)
Q Consensus 106 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (365)
|++.++ .+ .+.+ ..+....|+++. ++|+|++|..+|+..++...+.........+.......
T Consensus 98 alk~~~-~~---~~~~----~~ll~L~AQvlY---rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l------- 159 (652)
T KOG2376|consen 98 ALKTLK-GL---DRLD----DKLLELRAQVLY---RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL------- 159 (652)
T ss_pred HHHHHh-cc---cccc----hHHHHHHHHHHH---HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------
Confidence 999999 22 3333 567788899999 99999999999999988765543333333333221110
Q ss_pred HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CchhhhHHHHhHHHHHHHHH
Q 036703 186 DAIAGKMRLQYEDGVRKNPM-NYDTWFDYIRLEERVGNQERVREVYERAIANVP------PAEEKRYWQRYIYLWINYAL 258 (365)
Q Consensus 186 ~~~~~~a~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~~~~~~~~~~~~ 258 (365)
.+ . ..+.+...|. +.+..++.+..+...|++.+|++++++++..+- +..+...-...-.+...++-
T Consensus 160 -----~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 160 -----QV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred -----hH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 01 1 2333334444 568899999999999999999999999943311 11111111111223444455
Q ss_pred HHhhccCChhHHHHHHHHHHhccccCCCcc--------------------------------------------------
Q 036703 259 YKEVDAGDLERTRDVYRTLFIFYFSFSPRM-------------------------------------------------- 288 (365)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~-------------------------------------------------- 288 (365)
.+ ...|+..+|..+|...++..+.+....
T Consensus 233 Vl-Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~ 311 (652)
T KOG2376|consen 233 VL-QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYR 311 (652)
T ss_pred HH-HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 54 478999999999999998866544322
Q ss_pred ----------------------hh--HHHH-HHH-HHHH-HHhCCCccHHHHHHHHHhhCcch-HHHHHHHHHHHhhccc
Q 036703 289 ----------------------EE--RRIF-KKY-IEME-LCLGNIDPCRKLYEKYLEWSPEN-CYAWSKYTELEKSLDE 340 (365)
Q Consensus 289 ----------------------~~--~~~~-~~~-~~~~-~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~ 340 (365)
|. |... -.+ .... .+.....+|.+++....+.+|.+ ..+.+..+.+....|+
T Consensus 312 N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 312 NNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 11 1111 011 1111 11225677888888888888877 6788889999999999
Q ss_pred hhHHHHHHHH
Q 036703 341 TERARAIFEL 350 (365)
Q Consensus 341 ~~~A~~~~~~ 350 (365)
++.|..++..
T Consensus 392 ~~~A~~il~~ 401 (652)
T KOG2376|consen 392 PEVALEILSL 401 (652)
T ss_pred HHHHHHHHHH
Confidence 9999999983
No 113
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.51 E-value=1.7e-12 Score=105.55 Aligned_cols=137 Identities=23% Similarity=0.516 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703 55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM-GEVDRARNVYECAVEIFLADDHDEAEQLFVAFA 133 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (365)
+|..+..+..+.+..+.|+.+|.++++..+.+..+|...|.++... ++.+.|.++|+.+++. +|.+ ..+|..|+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~----~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSD----PDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-----HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCC----HHHHHHHH
Confidence 6788888888888888888888888866666778888888887774 4555588888888888 7777 88888888
Q ss_pred HHHHhccccchhHHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY 207 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~ 207 (365)
.++. ..|+.+.|+.+|++++...|... ...+|..++.++...|+.+ ....+++++.+..|.+.
T Consensus 78 ~~l~---~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~--------~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 78 DFLI---KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE--------SVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHH---HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH--------HHHHHHHHHHHHTTTS-
T ss_pred HHHH---HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHhhhhh
Confidence 8888 88888888888888888777765 5678888888888888754 46667777777777643
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=2.2e-12 Score=93.76 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=108.6
Q ss_pred HHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703 41 QIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA 119 (365)
Q Consensus 41 ~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 119 (365)
..+++++..+|+ ......++..+...|++++|...|++++..+|+++.+|..+|.++...|++++|...++++++. .|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-DP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 578899999998 5777889999999999999999999999999999999999999999999999999999999999 88
Q ss_pred CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
.+ +..+..+|.++. ..|++++|...|+++++..|.+.
T Consensus 83 ~~----~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 83 DD----PRPYFHAAECLL---ALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred CC----hHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccccc
Confidence 88 999999999999 99999999999999999999864
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.48 E-value=1.2e-11 Score=94.46 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=148.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703 5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCH 83 (365)
Q Consensus 5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 83 (365)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|. ......++....+.|++..|...++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444555666778999999 99999999999999999999998888887 5666679999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
|++.++|..+|-+|.+.|+++.|+..|.++++. .|.+ +.+..+++-.+. -.|+++.|..++..+...-+.+
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~----p~~~nNlgms~~---L~gd~~~A~~lll~a~l~~~ad- 201 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-APNE----PSIANNLGMSLL---LRGDLEDAETLLLPAYLSPAAD- 201 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-ccCC----chhhhhHHHHHH---HcCCHHHHHHHHHHHHhCCCCc-
Confidence 999999999999999999999999999999999 9998 999999999999 9999999999999998766544
Q ss_pred hHHHHHHHHHHHHHcCCchh
Q 036703 164 AEDLYRKFLAFEKQYGDREG 183 (365)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~ 183 (365)
..+-..++......|++..
T Consensus 202 -~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 202 -SRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred -hHHHHHHHHHHhhcCChHH
Confidence 4566777777777887664
No 116
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.47 E-value=7.1e-10 Score=91.13 Aligned_cols=330 Identities=14% Similarity=0.215 Sum_probs=204.6
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhcc---------HHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNE---------VQRA 72 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---------~~~A 72 (365)
++.-+++|++...-.|--+.+|..+..-.+...++.....+|.+++...-+.++|..|...-.+.++ +-+|
T Consensus 58 ~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~a 137 (660)
T COG5107 58 MDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEA 137 (660)
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHHHHhhCcccccchhhhhHHH
Confidence 5677888999888889889999999988888899999999999998766667788877776655431 1122
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHh---------hcchHHHHHHHHHHHhhhhcCC----------------------
Q 036703 73 RHIFERLVQCHPYNLSAWINFADFEMK---------MGEVDRARNVYECAVEIFLADD---------------------- 121 (365)
Q Consensus 73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~---------------------- 121 (365)
-++.-.+.-..|.+...|..++.++.. +.+.+..+..|.+++..+..+-
T Consensus 138 yefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKf 217 (660)
T COG5107 138 YEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKF 217 (660)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233567777777777766542 2345666777777776521111
Q ss_pred --------------------------------------------------------------------------------
Q 036703 122 -------------------------------------------------------------------------------- 121 (365)
Q Consensus 122 -------------------------------------------------------------------------------- 121 (365)
T Consensus 218 vge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y 297 (660)
T COG5107 218 VGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY 297 (660)
T ss_pred hcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH
Confidence
Q ss_pred hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR 201 (365)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 201 (365)
.+-.+++|+.+..+.. ..++-+.|+.+.++++..+|+ +...+...+....+.+.+... .++....+.+-..
T Consensus 298 ~~~~~evw~dys~Y~~---~isd~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~-fdk~~q~L~r~ys 368 (660)
T COG5107 298 FYYAEEVWFDYSEYLI---GISDKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGC-FDKCTQDLKRKYS 368 (660)
T ss_pred hhhhHHHHHHHHHHHh---hccHHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhh-HHHHHHHHHHHHh
Confidence 0001222333333333 455566666666666666554 222333333333332221110 0111111111000
Q ss_pred -----------cCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHH
Q 036703 202 -----------KNPM------------NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258 (365)
Q Consensus 202 -----------~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 258 (365)
.+|. -.-+|..+...-.+..-.+.|+.+|-++-+.--...+ +.+...+..
T Consensus 369 ~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~-------vyi~~A~~E 441 (660)
T COG5107 369 MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH-------VYIYCAFIE 441 (660)
T ss_pred hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc-------eeeeHHHHH
Confidence 0111 1123344444445566688899999998775322222 445555555
Q ss_pred HHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc--hHHHHHHHHHHH
Q 036703 259 YKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE--NCYAWSKYTELE 335 (365)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~ 335 (365)
++ ..|++..|-.+|+-++... |+ +.....+..++...++-+.|+.+|++++..-.+ -..+|-.+...+
T Consensus 442 ~~--~~~d~~ta~~ifelGl~~f-------~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YE 512 (660)
T COG5107 442 YY--ATGDRATAYNIFELGLLKF-------PDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYE 512 (660)
T ss_pred HH--hcCCcchHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Confidence 53 7899999999999999998 55 555667788888999999999999988866333 367999999999
Q ss_pred hhccchhHHHHHHHHHhcCcC
Q 036703 336 KSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 336 ~~~g~~~~A~~~~~~a~~~~~ 356 (365)
...|+...+..+=++.....|
T Consensus 513 s~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 513 SMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HhhcchHHHHhHHHHHHHHcC
Confidence 999999888777777766665
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=8.9e-11 Score=106.09 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=111.0
Q ss_pred HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
....+|.++.++..+|.+..+.|.+++|...++.+++. .|++ ..++..++.++. +.+++++|+..+++++..
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~----~~a~~~~a~~L~---~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDS----SEAFILMLRGVK---RQQGIEAGRAEIELYFSG 149 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCc----HHHHHHHHHHHH---HhccHHHHHHHHHHHhhc
Confidence 34456777788888888888888888888888888888 7776 778888888888 888888888888888887
Q ss_pred CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703 159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP 238 (365)
Q Consensus 159 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 238 (365)
.|++ .......+......|..+ +|...|++++..+|++..+|..+|..+...|+.++|...|+++++...
T Consensus 150 ~p~~--~~~~~~~a~~l~~~g~~~--------~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 150 GSSS--AREILLEAKSWDEIGQSE--------QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred CCCC--HHHHHHHHHHHHHhcchH--------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 7776 566666777777777755 577888888887787788888888888888888888888888887755
Q ss_pred Cc
Q 036703 239 PA 240 (365)
Q Consensus 239 ~~ 240 (365)
+.
T Consensus 220 ~~ 221 (694)
T PRK15179 220 DG 221 (694)
T ss_pred cc
Confidence 43
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.43 E-value=8.3e-12 Score=107.90 Aligned_cols=219 Identities=11% Similarity=0.094 Sum_probs=161.1
Q ss_pred chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH
Q 036703 86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE 165 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 165 (365)
-...-..++..+.+.|=...|..+|++ ...|-..+.+|. ..|+..+|..+..+-++..|. +
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Er-------------lemw~~vi~CY~---~lg~~~kaeei~~q~lek~~d---~ 457 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFER-------------LEMWDPVILCYL---LLGQHGKAEEINRQELEKDPD---P 457 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHh-------------HHHHHHHHHHHH---HhcccchHHHHHHHHhcCCCc---c
Confidence 344556778888888888888777775 445666677777 888888888888888885444 3
Q ss_pred HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhh
Q 036703 166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN-PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR 244 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 244 (365)
.+|-.++++.... .+|+++.+.. -.+..+...++......++++++.+.++..++.+|-..+
T Consensus 458 ~lyc~LGDv~~d~---------------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~-- 520 (777)
T KOG1128|consen 458 RLYCLLGDVLHDP---------------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG-- 520 (777)
T ss_pred hhHHHhhhhccCh---------------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--
Confidence 4555555543221 2444444431 123344455555555678888888888888888888743
Q ss_pred HHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc
Q 036703 245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE 323 (365)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 323 (365)
.|+.++.+. .+.++++.|.+.|.+++... |+ .+.|+++...+++.|+-.+|...+.+|++.+-+
T Consensus 521 -------~wf~~G~~A-Lqlek~q~av~aF~rcvtL~-------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 521 -------TWFGLGCAA-LQLEKEQAAVKAFHRCVTLE-------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred -------HHHhccHHH-HHHhhhHHHHHHHHHHhhcC-------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 788887775 68888888888888888888 54 667788888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 324 NCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 324 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
+..+|.++..+.+..|.+++|.+.|.+.+.+.
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888887654
No 119
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.43 E-value=5.1e-12 Score=102.81 Aligned_cols=137 Identities=23% Similarity=0.483 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR-YNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
-+|+.+.++..+.+..+.|+.+|++|.+..+. ..+|..+|.++.. .++.+.|..+|+++++..|.++.+|..+++++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999965554 7899999999888 567777999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
..|+.+.|+.+|++++.. .|.. .....+|..++.++. ..|+.+.+.++.+++.+..|..
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~-~~~~~iw~~~i~fE~---~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKE-KQSKKIWKKFIEFES---KYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCH-HHCHHHHHHHHHHHH---HHS-HHHHHHHHHHHHHHTTTS
T ss_pred HhCcHHHHHHHHHHHHHh-cCch-hHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999 8775 224689999999999 9999999999999999988875
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.43 E-value=2e-11 Score=87.11 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=100.2
Q ss_pred HHhC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH
Q 036703 13 VTLS-PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW 90 (365)
Q Consensus 13 l~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 90 (365)
..+. |+.-+..+.+|..+...|++++|.++|+-+...+|. ...|..+|-++...|++++|+..|.+++..+|+++...
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3446 777788999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIFLA 119 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 119 (365)
...|.++...|+.+.|++.|+.++.. ..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~-~~ 134 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI-CG 134 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-hc
Confidence 99999999999999999999999998 63
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.42 E-value=5.2e-11 Score=91.06 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 036703 37 AGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE 115 (365)
Q Consensus 37 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 115 (365)
..+...+-+....+|+ ..+ ..++..+...|+-+.+..+..++...+|.+..+...+|....+.|++..|+..+.++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 3466666677778887 566 88888899999999999999999999999999998899999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHH
Q 036703 116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195 (365)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 195 (365)
. .|++ +.+|..+|-.|. +.|+++.|+.-|.++++..|.+ ..+...++..+.-.|+.+ .|..+
T Consensus 129 l-~p~d----~~~~~~lgaald---q~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~--------~A~~l 190 (257)
T COG5010 129 L-APTD----WEAWNLLGAALD---QLGRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLE--------DAETL 190 (257)
T ss_pred c-CCCC----hhhhhHHHHHHH---HccChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHH--------HHHHH
Confidence 9 9998 999999999999 9999999999999999999887 567888888888888865 68899
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703 196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERA 233 (365)
Q Consensus 196 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 233 (365)
+..+....+.+..+..+++.+....|++..|.++-.+-
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999888889999999999999999999998876553
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.5e-09 Score=95.50 Aligned_cols=334 Identities=17% Similarity=0.271 Sum_probs=220.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH---hccHHHHHHHHHHHHH
Q 036703 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR---YNEVQRARHIFERLVQ 81 (365)
Q Consensus 6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~---~~~~~~A~~~~~~~l~ 81 (365)
+..++.-+.+++.+......|..+....|++++.+..-..+.++.|. +.+|..++.-... .++-..+...|++++.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 34556666778888889999999999999999988888888888898 7899998865443 3677888999999997
Q ss_pred hCCcchHHHHHHHHHHHhh-------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH---HHHHhccccchhHHHHHH
Q 036703 82 CHPYNLSAWINFADFEMKM-------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFA---KFEEMGCNCKETDRARCI 151 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~ 151 (365)
..- ++.+|..++.+.... ++++..+.+|++++.. .+........+|..+. ..+. ..-..++...+
T Consensus 179 dy~-~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s-~g~~~t~G~~~we~~~E~e~~~l---~n~~~~qv~a~ 253 (881)
T KOG0128|consen 179 DYN-SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS-LGSHITEGAAIWEMYREFEVTYL---CNVEQRQVIAL 253 (881)
T ss_pred ccc-cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh-hhhhhcccHHHHHHHHHHHHHHH---HhHHHHHHHHH
Confidence 766 899999999887764 4578889999999988 5443222244554444 3344 55556778888
Q ss_pred HHHHhccCCCchhHHHHHHHHHH-----HHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHH
Q 036703 152 YKFALDRIPKGRAEDLYRKFLAF-----EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERV 226 (365)
Q Consensus 152 ~~~~l~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A 226 (365)
+.+.+... -+.....|.-.-.. .....+.+.. -....+-+..+++.++..|.....|..++++....|+....
T Consensus 254 ~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a-~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri 331 (881)
T KOG0128|consen 254 FVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDA-LKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRI 331 (881)
T ss_pred HHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 88777643 22111111111111 0000011000 00012344556677777777778899999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc------------------
Q 036703 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM------------------ 288 (365)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~------------------ 288 (365)
...+++++...+.+.. .|+.|+.+.....+-.+.+...+-++++.+|-...+|
T Consensus 332 ~l~~eR~~~E~~~~~~---------~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~ 402 (881)
T KOG0128|consen 332 QLIEERAVAEMVLDRA---------LWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIV 402 (881)
T ss_pred HHHHHHHHHhccccHH---------HHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHH
Confidence 9999999888776643 4444444332222222222222333333222222222
Q ss_pred --------------------------------------------------------hhHHHHHHHHHHHH-HhCCCccHH
Q 036703 289 --------------------------------------------------------EERRIFKKYIEMEL-CLGNIDPCR 311 (365)
Q Consensus 289 --------------------------------------------------------~~~~~~~~~~~~~~-~~~~~~~A~ 311 (365)
+...+...++.++. .+++.+.|+
T Consensus 403 ~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R 482 (881)
T KOG0128|consen 403 QNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAR 482 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhh
Confidence 23456666777776 468889999
Q ss_pred HHHHHHHhhCcchHH-HHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 312 KLYEKYLEWSPENCY-AWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 312 ~~~~~al~~~p~~~~-~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
.+++..+...-.+.. .|+.+++++...|+...++.++++|....
T Consensus 483 ~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 483 EIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred HhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 999888877655665 89999999999999999999888887543
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.4e-12 Score=99.32 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=50.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703 27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR 105 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 105 (365)
|.-....++|.+|+..|.+||+++|. ...+...+..|.+.|.++.|++-.++++.++|....+|.++|..+..+|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 44444555555555555555555555 34444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhhhcCC
Q 036703 106 ARNVYECAVEIFLADD 121 (365)
Q Consensus 106 A~~~~~~a~~~~~~~~ 121 (365)
|++.|+++++. .|++
T Consensus 168 A~~aykKaLel-dP~N 182 (304)
T KOG0553|consen 168 AIEAYKKALEL-DPDN 182 (304)
T ss_pred HHHHHHhhhcc-CCCc
Confidence 55555555555 5554
No 124
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.41 E-value=5.1e-09 Score=87.33 Aligned_cols=95 Identities=22% Similarity=0.430 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc-hHHHHHHHHHHHh
Q 036703 38 GARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE-VDRARNVYECAVE 115 (365)
Q Consensus 38 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~ 115 (365)
.-..+|.+|+...+. ..+|..++.+..+.+.+.+...+|.+++..+|+++++|+.-|..+...+. .+.|+.+|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 455688999988884 89999999999999999999999999999999999999999999998765 9999999999999
Q ss_pred hhhcCChhhHHHHHHHHHHHHH
Q 036703 116 IFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
. +|++ +.+|..+-++..
T Consensus 169 ~-npds----p~Lw~eyfrmEL 185 (568)
T KOG2396|consen 169 F-NPDS----PKLWKEYFRMEL 185 (568)
T ss_pred c-CCCC----hHHHHHHHHHHH
Confidence 9 9888 999999988776
No 125
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.40 E-value=2.8e-11 Score=98.36 Aligned_cols=227 Identities=12% Similarity=0.028 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--cchHHHHHHHHHHHh
Q 036703 22 LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHP--YNLSAWINFADFEMK 99 (365)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~ 99 (365)
......+.+..+|+++.++.-.... ..|...+...++.++...++.+.+...++..+.... .++.+....|.++..
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3445556666666655444333221 133344444555554443444444444444332221 233444444555555
Q ss_pred hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703 100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 179 (365)
.|++++|++++++. . + .+.......++. ..++++.|.+.++++.+...+.....+...++.+.....
T Consensus 115 ~~~~~~AL~~l~~~-~-----~----lE~~al~Vqi~L---~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-G-----S----LELLALAVQILL---KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp CCHHHHHHCCCTTT-T-----C----HHHHHHHHHHHH---HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHcc-C-----c----ccHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence 66666666555443 1 1 444444555666 666666666666666555544433333333333332222
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259 (365)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 259 (365)
... .|.-+|+...+..|.++.++..++.+....|++++|...+++++..+|.+++ ++.+.+.+
T Consensus 182 ~~~--------~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d---------~LaNliv~ 244 (290)
T PF04733_consen 182 KYQ--------DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD---------TLANLIVC 244 (290)
T ss_dssp CCC--------HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH---------HHHHHHHH
T ss_pred hHH--------HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH---------HHHHHHHH
Confidence 222 4666666655555566666666666666666666666666666666666543 34444444
Q ss_pred HhhccCCh-hHHHHHHHHHHhcc
Q 036703 260 KEVDAGDL-ERTRDVYRTLFIFY 281 (365)
Q Consensus 260 ~~~~~~~~-~~a~~~~~~a~~~~ 281 (365)
. ...|+. +.+.+.+.+....+
T Consensus 245 ~-~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 245 S-LHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp H-HHTT-TCHHHHHHHHHCHHHT
T ss_pred H-HHhCCChhHHHHHHHHHHHhC
Confidence 3 244444 34444444444444
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.38 E-value=4.1e-11 Score=97.36 Aligned_cols=254 Identities=9% Similarity=0.046 Sum_probs=106.6
Q ss_pred HHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHH
Q 036703 30 EENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRAR 107 (365)
Q Consensus 30 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~ 107 (365)
..-.|++.+++.-++ ....+|. ........+.+..+|+++.++.-... ..+........++.++...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHH
Confidence 444567776665555 2233333 33444555666666665544333222 22224455555565555444444444
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHH
Q 036703 108 NVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDA 187 (365)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (365)
.-++..+....+. .++.+....|.++. ..|++++|++++++. . ..+.....+.++...++.+
T Consensus 87 ~~l~~~~~~~~~~---~~~~~~~~~A~i~~---~~~~~~~AL~~l~~~-----~--~lE~~al~Vqi~L~~~R~d----- 148 (290)
T PF04733_consen 87 EELKELLADQAGE---SNEIVQLLAATILF---HEGDYEEALKLLHKG-----G--SLELLALAVQILLKMNRPD----- 148 (290)
T ss_dssp HHHHHCCCTS------CHHHHHHHHHHHHC---CCCHHHHHHCCCTTT-----T--CHHHHHHHHHHHHHTT-HH-----
T ss_pred HHHHHHHHhcccc---ccHHHHHHHHHHHH---HcCCHHHHHHHHHcc-----C--cccHHHHHHHHHHHcCCHH-----
Confidence 4444433220111 12334444455555 666666666655432 1 1233333344444444433
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703 188 IAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV--GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG 265 (365)
Q Consensus 188 ~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (365)
.|.+.++.+-+.+.++.-+-..-+.+.... +++.+|.-+|++.....|.++. +....+.+. +..|
T Consensus 149 ---lA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~---------~lng~A~~~-l~~~ 215 (290)
T PF04733_consen 149 ---LAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK---------LLNGLAVCH-LQLG 215 (290)
T ss_dssp ---HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH---------HHHHHHHHH-HHCT
T ss_pred ---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH---------HHHHHHHHH-HHhC
Confidence 344444444444333322222222222222 2345555555554444433321 333333333 3455
Q ss_pred ChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCC-ccHHHHHHHHHhhCcchH
Q 036703 266 DLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNI-DPCRKLYEKYLEWSPENC 325 (365)
Q Consensus 266 ~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~ 325 (365)
++++|.+.++.++..+ |. +++..+++.+....|+. +.+.+++.++...+|+++
T Consensus 216 ~~~eAe~~L~~al~~~-------~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 216 HYEEAEELLEEALEKD-------PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp -HHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred CHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 5555555555554443 22 44444444444444444 333444444444444443
No 127
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=3.4e-09 Score=84.64 Aligned_cols=329 Identities=12% Similarity=0.012 Sum_probs=200.8
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh--------------hCCC-------------h
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH--------------WMPD-------------H 53 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------------~~p~-------------~ 53 (365)
+|++|...|+-+...+.-+..+|..++-+..-.|.+.+|..+-.++-+ ++.+ .
T Consensus 72 dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~ 151 (557)
T KOG3785|consen 72 DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL 151 (557)
T ss_pred cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH
Confidence 588999999998887666689999999999999999999887655522 1111 1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh----------
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD---------- 123 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------- 123 (365)
+--+.++.+....-.+++|+.+|.+.+..+|.-..+-..++.+|.+..-++-+.+++.--++. .|++..
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHh
Confidence 223455666666678999999999999999988888888999999999999999999988888 887600
Q ss_pred ----------------------------------------------------hHHHHHHHHHHHHHhccccchhHHHHHH
Q 036703 124 ----------------------------------------------------EAEQLFVAFAKFEEMGCNCKETDRARCI 151 (365)
Q Consensus 124 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 151 (365)
.-|++-.+++-+|. ++++..+|..+
T Consensus 231 Rl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL---~q~dVqeA~~L 307 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYL---NQNDVQEAISL 307 (557)
T ss_pred hhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeec---ccccHHHHHHH
Confidence 00111223333333 67777777777
Q ss_pred HHHHhccCCCchhHHHHHHH--HHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHH
Q 036703 152 YKFALDRIPKGRAEDLYRKF--LAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEERVGNQERVR 227 (365)
Q Consensus 152 ~~~~l~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~ 227 (365)
.+.. .|..+..-+.... +.+-...|..+. ++.|...|+-+=.. ..+.......++....-..++++.+
T Consensus 308 ~Kdl---~PttP~EyilKgvv~aalGQe~gSreH-----lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 308 CKDL---DPTTPYEYILKGVVFAALGQETGSREH-----LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred Hhhc---CCCChHHHHHHHHHHHHhhhhcCcHHH-----HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 6653 3433212222222 122223333321 22333333221110 0111223444555555556677776
Q ss_pred HHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCC
Q 036703 228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNI 307 (365)
Q Consensus 228 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (365)
.++...-.-.-++.. +.+++++.. ...|++.+|.++|-+.-..... .+.-.-..++.++...+..
T Consensus 380 ~YlnSi~sYF~NdD~---------Fn~N~AQAk-~atgny~eaEelf~~is~~~ik-----n~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDD---------FNLNLAQAK-LATGNYVEAEELFIRISGPEIK-----NKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHhcCcch---------hhhHHHHHH-HHhcChHHHHHHHhhhcChhhh-----hhHHHHHHHHHHHHhcCCc
Confidence 666555444444332 566777776 5788888888887765432100 1122334567788888888
Q ss_pred ccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703 308 DPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL 357 (365)
Q Consensus 308 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 357 (365)
+.|=.++-+.- ...+...+....++.+...|.+--|.+.|...-.++|.
T Consensus 445 ~lAW~~~lk~~-t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 445 QLAWDMMLKTN-TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 87766664431 11123345555666777777777777777766666663
No 128
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=7.7e-09 Score=99.62 Aligned_cols=320 Identities=12% Similarity=0.028 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC--------C--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch--
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMP--------D--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-- 87 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-- 87 (365)
+.+....+.+....|++++|...+.++....+ . .......+.++...|+++.|...+++++...|...
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 44456667777889999999999998875422 1 12233455677789999999999999998655322
Q ss_pred ---HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 88 ---SAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 88 ---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.....++..+...|++++|...+++++.. .... .......+..++.++. ..|++++|...+++++......
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~-~~~~g~~~~~~~~~~~la~~~~---~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQM-ARQHDVYHYALWSLLQQSEILF---AQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhcchHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHh
Confidence 34566778888899999999999999876 4322 0111345567788888 9999999999999988753211
Q ss_pred -----h-hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC----C-CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 036703 163 -----R-AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP----M-NYDTWFDYIRLEERVGNQERVREVYE 231 (365)
Q Consensus 163 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p----~-~~~~~~~~~~~~~~~~~~~~A~~~~~ 231 (365)
. ....+...+......|+.+ .|...+++++.... . ....+..++.+....|+++.|...++
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLD--------EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0 1223334455666678765 57777777766422 1 23455667888899999999999999
Q ss_pred HHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHH
Q 036703 232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCR 311 (365)
Q Consensus 232 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 311 (365)
++....+.......+.... .... ...+ ...|+.+.|...+.......+.. .+.....+..++.++...|++++|.
T Consensus 637 ~a~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANA-DKVR-LIYW-QMTGDKEAAANWLRQAPKPEFAN--NHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHhcccccHhHhhHH-HHHH-HHHH-HHCCCHHHHHHHHHhcCCCCCcc--chhHHHHHHHHHHHHHHcCCHHHHH
Confidence 9976533221000000000 0011 1222 35788999988877765432111 0001223567788888999999999
Q ss_pred HHHHHHHhhC------cchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 312 KLYEKYLEWS------PENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 312 ~~~~~al~~~------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
..+++++... +....+...++..+...|+.++|...+.++++...
T Consensus 712 ~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 712 IILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 9999998762 22345778889999999999999999999998764
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=7.4e-10 Score=92.09 Aligned_cols=154 Identities=13% Similarity=0.047 Sum_probs=131.5
Q ss_pred CC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703 51 PD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129 (365)
Q Consensus 51 p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 129 (365)
|. ...|+..+..+...|+++.|+..+...+...|+|+..+...++++.+.|+.++|.+.+++++.. .|.. +.++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~----~~l~ 377 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNS----PLLQ 377 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCc----cHHH
Confidence 45 6788888888888999999999999999999999999999999999999999999999999999 8887 8899
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 209 (365)
+++|+.+. ..|++.+|+..+++.+..+|++ ...|..+++.+...|+.. ..
T Consensus 378 ~~~a~all---~~g~~~eai~~L~~~~~~~p~d--p~~w~~LAqay~~~g~~~-------------------------~a 427 (484)
T COG4783 378 LNLAQALL---KGGKPQEAIRILNRYLFNDPED--PNGWDLLAQAYAELGNRA-------------------------EA 427 (484)
T ss_pred HHHHHHHH---hcCChHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHhCchH-------------------------HH
Confidence 99999999 9999999999999999988887 678888888887777633 34
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703 210 WFDYIRLEERVGNQERVREVYERAIANVPP 239 (365)
Q Consensus 210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 239 (365)
....++.+...|+++.|+..+.++.+....
T Consensus 428 ~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 428 LLARAEGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 455667777889999999999988887633
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2e-10 Score=90.25 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc---cHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN---EVQRARHIFE 77 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~---~~~~A~~~~~ 77 (365)
.+....-++.-++.+|++..-|..+|.++..+|+...|...|.+++++.|+ +..+..++..+..+. ...++..+|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 345667788889999999999999999999999999999999999999999 899999998776543 4678999999
Q ss_pred HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+++..+|+++.....+|.-+...|++.+|...++.+++. .|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-LPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCC
Confidence 999999999999999999999999999999999999999 8876
No 131
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1e-07 Score=74.62 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=118.7
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHH-
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFER- 78 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~- 78 (365)
+|+.|++++..-.+.+|.+-.....+|.||....++..|...|++.-...|. ...-+-.+....+.+.+..|..+...
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~ 104 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLL 104 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 3678899999888999998888999999999999999999999999999998 44444455555555555555544332
Q ss_pred ---------------H--------------HHhCC--cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHH
Q 036703 79 ---------------L--------------VQCHP--YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ 127 (365)
Q Consensus 79 ---------------~--------------l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 127 (365)
+ ++.-| ++....+..|-+..+.|+++.|.+-|+.+++. .+-. +-
T Consensus 105 ~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-sGyq----pl 179 (459)
T KOG4340|consen 105 LDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-SGYQ----PL 179 (459)
T ss_pred cCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-cCCC----ch
Confidence 1 12233 34566777788888999999999999999998 7776 88
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHH----HhccCCC
Q 036703 128 LFVAFAKFEEMGCNCKETDRARCIYKF----ALDRIPK 161 (365)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~----~l~~~p~ 161 (365)
+-++++..+. +.|+++.|+++... +++..|.
T Consensus 180 lAYniALaHy---~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 180 LAYNLALAHY---SSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred hHHHHHHHHH---hhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 8888999999 99999999887654 4455554
No 132
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.32 E-value=1.3e-08 Score=98.11 Aligned_cols=303 Identities=13% Similarity=0.037 Sum_probs=205.9
Q ss_pred hhhHHHHHHHHHHhCCC---------chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh------HHHHHHHHHHHHh
Q 036703 2 IDHGRNAWDRVVTLSPR---------VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH------EGWLSYIKFKLRY 66 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~ 66 (365)
+++|...++.+....+. ...+...++.++...|+++.|...+++++...|.. ..+..++..+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 56777777777654322 12334456777888999999999999999865541 2445567778889
Q ss_pred ccHHHHHHHHHHHHHhCCc------chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh----hhHHHHHHHHHHHH
Q 036703 67 NEVQRARHIFERLVQCHPY------NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH----DEAEQLFVAFAKFE 136 (365)
Q Consensus 67 ~~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~ 136 (365)
|++++|...+++++..... .......++.++...|+++.|...+++++.. ..... .....++..++.++
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL-IEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhccccccHHHHHHHHHHHHH
Confidence 9999999999999875332 1234567788899999999999999999886 33210 11123455678888
Q ss_pred HhccccchhHHHHHHHHHHhccCCC---chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC---HHHH
Q 036703 137 EMGCNCKETDRARCIYKFALDRIPK---GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN---YDTW 210 (365)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~---~~~~ 210 (365)
. ..|++++|...+.+++..... ......+...+.+....|+.. .|...++++....+.. ....
T Consensus 584 ~---~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~--------~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 584 W---EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD--------NARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred H---HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHhcccccHhHh
Confidence 8 899999999999998875332 112334444566777888865 5777777776542221 1111
Q ss_pred HH----HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703 211 FD----YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286 (365)
Q Consensus 211 ~~----~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 286 (365)
.. ....+...|+.+.|...+.......+..... ....+...+..+ ...|++++|...+++++........
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-----~~~~~~~~a~~~-~~~g~~~~A~~~l~~al~~~~~~g~ 726 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF-----LQGQWRNIARAQ-ILLGQFDEAEIILEELNENARSLRL 726 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh-----HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCc
Confidence 11 1233455789999999987766533222110 011344566665 5889999999999999887433222
Q ss_pred cchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc
Q 036703 287 RMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE 323 (365)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 323 (365)
. .. ......++..+...|+.++|...+.++++....
T Consensus 727 ~-~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 727 M-SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred h-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 1 12 456778889999999999999999999998643
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.31 E-value=1.5e-10 Score=82.62 Aligned_cols=105 Identities=16% Similarity=0.110 Sum_probs=97.6
Q ss_pred hhC-CC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH
Q 036703 48 HWM-PD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA 125 (365)
Q Consensus 48 ~~~-p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 125 (365)
.+. ++ -.....++......|++++|..+|+-+...+|.+...|+.+|.++...|++++|+..|.++... .|++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~~dd---- 102 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-KIDA---- 102 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCC----
Confidence 444 44 4667888999999999999999999999999999999999999999999999999999999999 9988
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
+..+...|.++. ..|+.+.|++.|+.++..+.
T Consensus 103 p~~~~~ag~c~L---~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 103 PQAPWAAAECYL---ACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred chHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhc
Confidence 999999999999 99999999999999998764
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=8.4e-10 Score=91.76 Aligned_cols=134 Identities=12% Similarity=-0.029 Sum_probs=123.8
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA 94 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 94 (365)
.|....++++.+..+...|+++.|+..+...+...|+ +-.|...++++...|+..+|.+.+++++..+|+.+-+++.+|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3777889999999999999999999999999999999 677778889999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
+.+.+.|++.+|+..+++.+.. .|++ +..|..+++.|. .+|+..++...+.....
T Consensus 382 ~all~~g~~~eai~~L~~~~~~-~p~d----p~~w~~LAqay~---~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFN-DPED----PNGWDLLAQAYA---ELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhc-CCCC----chHHHHHHHHHH---HhCchHHHHHHHHHHHH
Confidence 9999999999999999999999 9998 999999999999 99988888777665554
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.7e-10 Score=90.05 Aligned_cols=113 Identities=18% Similarity=0.124 Sum_probs=98.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE 136 (365)
Q Consensus 57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
..-|.-..+.++|++|+..|.+||+++|.++..+...+..|.+.|.++.|++-.+.++.. .|.. ...|..+|..+
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-Dp~y----skay~RLG~A~ 159 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-DPHY----SKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-ChHH----HHHHHHHHHHH
Confidence 344555667789999999999999999999999999999999999999999999999999 7776 99999999999
Q ss_pred HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703 137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179 (365)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 179 (365)
. .+|++++|++.|+++|.+.|++. .++..+-......+
T Consensus 160 ~---~~gk~~~A~~aykKaLeldP~Ne--~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 160 L---ALGKYEEAIEAYKKALELDPDNE--SYKSNLKIAEQKLN 197 (304)
T ss_pred H---ccCcHHHHHHHHHhhhccCCCcH--HHHHHHHHHHHHhc
Confidence 9 99999999999999999999984 44444444443333
No 136
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.25 E-value=1.7e-10 Score=97.32 Aligned_cols=108 Identities=12% Similarity=0.129 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG 101 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 101 (365)
+...|......|++++|+..|.++++.+|+ ..+|..++.++...|++++|+..+++++..+|+++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 445567777788888888888888888887 6778888888888888888888888888888888888888888888888
Q ss_pred chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703 102 EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135 (365)
Q Consensus 102 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
++++|+..|+++++. .|.+ ..+...++.+
T Consensus 85 ~~~eA~~~~~~al~l-~P~~----~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASL-APGD----SRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHh-CCCC----HHHHHHHHHH
Confidence 888888888888888 7776 4444444433
No 137
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.24 E-value=4e-10 Score=95.06 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=93.8
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
+++.|+..|+++++.+|+++.+|..+|.++...|++++|+..+++++.++|+ ..+|..+|.++...|+++.|+..|+++
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhh
Q 036703 80 VQCHPYNLSAWINFADFEMKM 100 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~ 100 (365)
+..+|+++.+...++.+..+.
T Consensus 97 l~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 97 ASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 999999998888777765554
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.22 E-value=6.7e-09 Score=80.60 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch---HHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL---SAWIN 92 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~ 92 (365)
+..++..|......|++.+|+..|++++...|. ..+.+.++..+...|+++.|+..+++.++.+|+++ .++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 567888999999999999999999999999997 67889999999999999999999999999999865 45666
Q ss_pred HHHHHHhh-----------cchHHHHHHHHHHHhhhhcCChhhHH--------------HHHHHHHHHHHhccccchhHH
Q 036703 93 FADFEMKM-----------GEVDRARNVYECAVEIFLADDHDEAE--------------QLFVAFAKFEEMGCNCKETDR 147 (365)
Q Consensus 93 ~~~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 147 (365)
.|.++... +...+|+..|+..++. .|++ +-.. .--+..|.+|. +.|.+..
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~-yP~S-~y~~~A~~~l~~l~~~la~~e~~ia~~Y~---~~~~y~a 159 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR-YPNS-EYAEEAKKRLAELRNRLAEHELYIARFYY---KRGKYKA 159 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTT-HHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH-CcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccHHH
Confidence 66665443 3456899999999999 9987 2211 11245678888 9999999
Q ss_pred HHHHHHHHhccCCCchh-HHHHHHHHHHHHHcCCch
Q 036703 148 ARCIYKFALDRIPKGRA-EDLYRKFLAFEKQYGDRE 182 (365)
Q Consensus 148 A~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~ 182 (365)
|..-++.+++..|+... ......++..+...|...
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 99999999999999763 345556666777777644
No 139
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.22 E-value=7.6e-09 Score=84.80 Aligned_cols=233 Identities=17% Similarity=0.198 Sum_probs=149.1
Q ss_pred ChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcchHHHHH
Q 036703 35 NVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHP------YNLSAWINFADFEMKMGEVDRARN 108 (365)
Q Consensus 35 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~~~A~~ 108 (365)
+++.|...|+++ |..+...|++++|...|.++....- .....+...+.++.+. ++++|++
T Consensus 30 ~~e~Aa~~y~~A-------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~ 95 (282)
T PF14938_consen 30 DYEEAADLYEKA-------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE 95 (282)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred CHHHHHHHHHHH-------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence 566677777666 6667777777788887777765331 1234556666666555 8999999
Q ss_pred HHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh
Q 036703 109 VYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNC-KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE 185 (365)
Q Consensus 109 ~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (365)
+|++++.. .-.. +......+..+|.++. .. |++++|++.|++|+.... ..+...
T Consensus 96 ~~~~A~~~-y~~~G~~~~aA~~~~~lA~~ye---~~~~d~e~Ai~~Y~~A~~~y~----------------~e~~~~--- 152 (282)
T PF14938_consen 96 CYEKAIEI-YREAGRFSQAAKCLKELAEIYE---EQLGDYEKAIEYYQKAAELYE----------------QEGSPH--- 152 (282)
T ss_dssp HHHHHHHH-HHHCT-HHHHHHHHHHHHHHHC---CTT--HHHHHHHHHHHHHHHH----------------HTT-HH---
T ss_pred HHHHHHHH-HHhcCcHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHH----------------HCCChh---
Confidence 99999886 4322 2334677888999998 88 899999999999875322 222111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703 186 DAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG 265 (365)
Q Consensus 186 ~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (365)
.+ ...+..++.++...|++++|.+.|+++....-.++..+. . .-..++..+.+. +..|
T Consensus 153 -----~a--------------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~-~-~~~~~l~a~l~~-L~~~ 210 (282)
T PF14938_consen 153 -----SA--------------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY-S-AKEYFLKAILCH-LAMG 210 (282)
T ss_dssp -----HH--------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH-H-HHHHHHHHHHHH-HHTT
T ss_pred -----hH--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch-h-HHHHHHHHHHHH-HHcC
Confidence 11 144556788899999999999999999886544321110 0 011333334443 5789
Q ss_pred ChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH--hCCCccHHHHHHHHHhhCcchHHH
Q 036703 266 DLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC--LGNIDPCRKLYEKYLEWSPENCYA 327 (365)
Q Consensus 266 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~ 327 (365)
++..|...+++.....|.+..- ....+...++..+.. ...++.|..-|++...++|-...+
T Consensus 211 D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~ 273 (282)
T PF14938_consen 211 DYVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKM 273 (282)
T ss_dssp -HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHH
Confidence 9999999999999998776542 336666666666653 345777888888877777644443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.21 E-value=6.9e-10 Score=81.29 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=97.2
Q ss_pred hhhHHHHHHHHHHhCCCc---hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRV---DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARH 74 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~ 74 (365)
...+...++..+..+|++ ..+.+.+|.++...|++++|...|+.++...|+ ..+++.++.++...|++++|..
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~ 106 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALA 106 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456677889999999998 566888999999999999999999999998776 3578889999999999999999
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703 75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV 114 (365)
Q Consensus 75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 114 (365)
.++. +...+..+..+...|+++...|+.++|+..|++++
T Consensus 107 ~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 107 TLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9976 34445577889999999999999999999999875
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.20 E-value=6.4e-09 Score=82.60 Aligned_cols=160 Identities=11% Similarity=0.000 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch---HHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL---SAWIN 92 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~ 92 (365)
+..++..|......|++++|+..|++++...|. ..+...+|..+.+.++++.|+..+++.++.+|+++ .++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 344555555555566666666666666665555 22344555555566666666666666666555543 23344
Q ss_pred HHHHHHhhc------------------chHHHHHHHHHHHhhhhcCCh-------------hhHHHHHHHHHHHHHhccc
Q 036703 93 FADFEMKMG------------------EVDRARNVYECAVEIFLADDH-------------DEAEQLFVAFAKFEEMGCN 141 (365)
Q Consensus 93 ~~~~~~~~~------------------~~~~A~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 141 (365)
.|.+....+ ...+|++.|++.++. .|++. ..-..--+..|.+|. +
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~---~ 187 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT---K 187 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 443321111 123455556666666 55540 000111245555565 5
Q ss_pred cchhHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHcCCchh
Q 036703 142 CKETDRARCIYKFALDR-IPKGRAEDLYRKFLAFEKQYGDREG 183 (365)
Q Consensus 142 ~~~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
.|.+..|+.-++.+++. -......+....++..+...|..+.
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 66666666666555541 1111113344444444445554443
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.20 E-value=1.1e-09 Score=77.56 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWIN 92 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~ 92 (365)
++.++..|..+...|++++|...|++++..+|+ ...+..++.++...|+++.|...|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 467889999999999999999999999999887 3578889999999999999999999999998875 678999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+|.++...|+.++|...++++++. .|++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~-~p~~ 109 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR-YPGS 109 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH-CcCC
Confidence 999999999999999999999999 8887
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.19 E-value=1.8e-08 Score=80.07 Aligned_cols=184 Identities=9% Similarity=0.016 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH---HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW---INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 129 (365)
...+...+.-....|++++|+..|++++...|.++..- ..+|..+.+.+++++|+..+++.++. .|++ +..+.++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-~P~~-~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-NPTH-PNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CcCC-CchHHHH
Confidence 56677788888899999999999999999999876554 88899999999999999999999999 9996 7778888
Q ss_pred HHHHHHHHhcccc------------------chhHHHHHHHHHHhccCCCchhHH-HHHHHHHHHHHcCCchhhhHHHHH
Q 036703 130 VAFAKFEEMGCNC------------------KETDRARCIYKFALDRIPKGRAED-LYRKFLAFEKQYGDREGIEDAIAG 190 (365)
Q Consensus 130 ~~~~~~~~~~~~~------------------~~~~~A~~~~~~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 190 (365)
+..|..+. .. ....+|+..|++.++..|++.... ....+.
T Consensus 110 Y~~g~~~~---~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~------------------ 168 (243)
T PRK10866 110 YMRGLTNM---ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLV------------------ 168 (243)
T ss_pred HHHHHhhh---hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH------------------
Confidence 88887643 22 223467788888888888764211 111111
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHH
Q 036703 191 KMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERT 270 (365)
Q Consensus 191 ~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 270 (365)
..+..+. .--+..+.+|.+.|.+.-|+.-++.++...|..+.. .......+..+ ...|..++|
T Consensus 169 ----~l~~~la------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~------~eal~~l~~ay-~~lg~~~~a 231 (243)
T PRK10866 169 ----FLKDRLA------KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT------RDALPLMENAY-RQLQLNAQA 231 (243)
T ss_pred ----HHHHHHH------HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH------HHHHHHHHHHH-HHcCChHHH
Confidence 1111111 112357788889999999999999999999987642 23444455555 477888887
Q ss_pred HHHHHH
Q 036703 271 RDVYRT 276 (365)
Q Consensus 271 ~~~~~~ 276 (365)
......
T Consensus 232 ~~~~~~ 237 (243)
T PRK10866 232 DKVAKI 237 (243)
T ss_pred HHHHHH
Confidence 776544
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.18 E-value=1e-08 Score=79.62 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 129 (365)
...+...|......|++.+|+..|++++...|.+ +.+.+.+|..+...|+++.|+..+++.++. .|.+ +..+.++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-yP~~-~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-YPNS-PKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT--TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCC-cchhhHH
Confidence 4567788888999999999999999999998865 577899999999999999999999999999 9996 6667777
Q ss_pred HHHHHHHHh--------ccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703 130 VAFAKFEEM--------GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR 201 (365)
Q Consensus 130 ~~~~~~~~~--------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 201 (365)
+..|..+.. ...++...+|+..|+..+...|++....--... +..+...+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~---------------------l~~l~~~la 141 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR---------------------LAELRNRLA 141 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH---------------------HHHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH---------------------HHHHHHHHH
Confidence 777766540 113344567888888888888876422111111 011111111
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHH
Q 036703 202 KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERT 270 (365)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 270 (365)
.--+.+|.+|.+.|.+..|..-++.+++..|++... -..+..++..+ ...|..+.+
T Consensus 142 ------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~------~~al~~l~~~y-~~l~~~~~a 197 (203)
T PF13525_consen 142 ------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA------EEALARLAEAY-YKLGLKQAA 197 (203)
T ss_dssp ------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH------HHHHHHHHHHH-HHTT-HHHH
T ss_pred ------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH------HHHHHHHHHHH-HHhCChHHH
Confidence 223457888999999999999999999999998642 12444455554 366665543
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.18 E-value=6.8e-10 Score=75.30 Aligned_cols=94 Identities=21% Similarity=0.316 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG 101 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 101 (365)
|..+|..+...|++++|+..++++++..|. ...|..++.++...|++++|...|++++...|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344444444444555555555554444444 3444444444444444444444444444444444444444444444444
Q ss_pred chHHHHHHHHHHHhh
Q 036703 102 EVDRARNVYECAVEI 116 (365)
Q Consensus 102 ~~~~A~~~~~~a~~~ 116 (365)
++++|...+.++++.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 444444444444443
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.18 E-value=7.5e-10 Score=75.08 Aligned_cols=84 Identities=15% Similarity=0.257 Sum_probs=73.4
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|...|+++++..|.+..++..+|.++...|++++|...|++++...|. ...|..++.++...|+++.|...+.++
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4678888999999988888888889999999999999999999999988888 568888888888899999999999988
Q ss_pred HHhCC
Q 036703 80 VQCHP 84 (365)
Q Consensus 80 l~~~p 84 (365)
+..+|
T Consensus 95 ~~~~~ 99 (100)
T cd00189 95 LELDP 99 (100)
T ss_pred HccCC
Confidence 88777
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.17 E-value=8.1e-10 Score=78.30 Aligned_cols=105 Identities=12% Similarity=0.200 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 130 (365)
..++..+..+...|++++|...|.+++..+|++ +.+++.+|.++.+.|+++.|...|++++.. .|.+ +..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~-~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-YPKS-PKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-CCCC-CcccHHHH
Confidence 567888999999999999999999999999876 568899999999999999999999999998 8874 34467899
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
.++.++. ..|++++|...+++++...|++.
T Consensus 81 ~~~~~~~---~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 81 KLGMSLQ---ELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHH---HhCChHHHHHHHHHHHHHCcCCh
Confidence 9999999 99999999999999999999863
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.17 E-value=1.7e-09 Score=81.58 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHhCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRV--DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIF 76 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~ 76 (365)
..+...+.+.++..+.+ ...|..+|.++...|++++|...|++++...|+ ..+|..++.++...|++++|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34555666665555555 677899999999999999999999999988766 358999999999999999999999
Q ss_pred HHHHHhCCcchHHHHHHHHHHH-------hhcchH-------HHHHHHHHHHhhhhcCC
Q 036703 77 ERLVQCHPYNLSAWINFADFEM-------KMGEVD-------RARNVYECAVEIFLADD 121 (365)
Q Consensus 77 ~~~l~~~p~~~~~~~~~~~~~~-------~~~~~~-------~A~~~~~~a~~~~~~~~ 121 (365)
++++..+|.....+..++.++. ..|+++ +|..+|++++.. .|.+
T Consensus 96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~-~p~~ 153 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL-APGN 153 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh-Cccc
Confidence 9999999999999999998888 667766 555555666666 6654
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.16 E-value=4.2e-09 Score=77.12 Aligned_cols=116 Identities=19% Similarity=0.127 Sum_probs=100.4
Q ss_pred hcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchH
Q 036703 32 NLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVD 104 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~ 104 (365)
..++...+...+++.+..+|+ ....+.++..+...|++++|...|++++...|+. +.+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 578899999999999999998 4677889999999999999999999999988754 457888999999999999
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703 105 RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL 156 (365)
Q Consensus 105 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 156 (365)
+|+..++... . .+. .+..+...|.++. ..|++++|+..|++++
T Consensus 103 ~Al~~L~~~~-~-~~~----~~~~~~~~Gdi~~---~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIP-D-EAF----KALAAELLGDIYL---AQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhcc-C-cch----HHHHHHHHHHHHH---HCCCHHHHHHHHHHhC
Confidence 9999996632 2 222 3778889999999 9999999999999875
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.15 E-value=1.4e-10 Score=73.11 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc-chhHHHHHHHHHhcCcC
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD-ETERARAIFELAIAQPI 356 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~~ 356 (365)
+.+|...|.++...|++++|+..|+++++.+|+++.+|..+|.++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5688999999999999999999999999999999999999999999999 79999999999999887
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.14 E-value=2.9e-06 Score=76.19 Aligned_cols=119 Identities=9% Similarity=-0.030 Sum_probs=96.3
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
||.+|.+...+.++.+|+...+-..-|-...+.|+.++|..+++..-...++ ..+...+-.+|...|..++|..+|+++
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5778999999999999999888888889999999999999777665555555 556677778999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
++.+|. .+....+-..|.+.+.+.+-.+.--+.-+. +|.+
T Consensus 104 ~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~ 143 (932)
T KOG2053|consen 104 NQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKR 143 (932)
T ss_pred HhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcc
Confidence 999996 888888888888888776544444444445 5554
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.14 E-value=5.8e-10 Score=70.28 Aligned_cols=63 Identities=24% Similarity=0.436 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-chHHHHHHHHHHHhh
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG-EVDRARNVYECAVEI 116 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~ 116 (365)
..|..+|..+...|++++|+..|.++++.+|+++.+|..+|.++...| ++++|++.++++++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 344555555555555555555555555555555555555555555555 455555555555544
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.9e-09 Score=83.15 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---chHHHHHHHH
Q 036703 36 VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG---EVDRARNVYE 111 (365)
Q Consensus 36 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~ 111 (365)
.+..+.-++.-+..+|+ ...|..+|.+|..+|++..|...|.+++++.|++++++..++..+..+. ...++..+++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 55667778888899999 8999999999999999999999999999999999999999999877653 4568999999
Q ss_pred HHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 112 CAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
+++.. .|.+ ......++.-++ .+|++.+|...++..++..|.+.
T Consensus 218 ~al~~-D~~~----iral~lLA~~af---e~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALAL-DPAN----IRALSLLAFAAF---EQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhc-CCcc----HHHHHHHHHHHH---HcccHHHHHHHHHHHHhcCCCCC
Confidence 99999 9988 999999999999 99999999999999999988764
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.11 E-value=6.9e-09 Score=78.50 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=87.4
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703 18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF 93 (365)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 93 (365)
....++..+|..+...|++++|...|++++...|+ ...|..++.++...|++++|...+.+++...|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 44667899999999999999999999999988776 36889999999999999999999999999999999999999
Q ss_pred HHHHHhhcc--------------hHHHHHHHHHHHhhhhcC
Q 036703 94 ADFEMKMGE--------------VDRARNVYECAVEIFLAD 120 (365)
Q Consensus 94 ~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~ 120 (365)
|.++...|+ +++|.+++++++.. .|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~-~p~ 152 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL-APN 152 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh-Cch
Confidence 999988776 45556666666655 544
No 155
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.1e-07 Score=71.98 Aligned_cols=292 Identities=11% Similarity=-0.030 Sum_probs=200.5
Q ss_pred HhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHH
Q 036703 31 ENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNV 109 (365)
Q Consensus 31 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 109 (365)
.+..++..|++++..-.+.+|. ......++.+|....++..|..+|++.-...|......+..++.+.+.+.+..|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5567788999999999999996 556677889999999999999999999999998888888889999999999999988
Q ss_pred HHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHH
Q 036703 110 YECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIA 189 (365)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (365)
...+... . .-.......-+.+.. +.+++..++.+.++. |+...+......+.+..+.|+.+
T Consensus 101 ~~~~~D~-~----~L~~~~lqLqaAIkY---se~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyE------- 161 (459)
T KOG4340|consen 101 AFLLLDN-P----ALHSRVLQLQAAIKY---SEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYE------- 161 (459)
T ss_pred HHHhcCC-H----HHHHHHHHHHHHHhc---ccccCcchHHHHHhc----cCCCccchhccchheeeccccHH-------
Confidence 8776554 1 111233333344444 678888888887764 43222455555566666777755
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCchh----------------hhHHHHh
Q 036703 190 GKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN----VPPAEE----------------KRYWQRY 249 (365)
Q Consensus 190 ~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~----------------~~~~~~~ 249 (365)
.|.+-|+.+++...-++-+-+.++.+..+.|++..|.++..+++.. .|.-.. ...-...
T Consensus 162 -aAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 -AAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred -HHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 6999999999998888888899999999999999998887766653 443110 0001112
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHH
Q 036703 250 IYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329 (365)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 329 (365)
+.....-+..+ .+.++++.|++.+..+--..... -+|....+.+-.- ..+++.+..+-+.-.+..+|--.+...
T Consensus 241 ~eAfNLKaAIe-yq~~n~eAA~eaLtDmPPRaE~e----lDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFA 314 (459)
T KOG4340|consen 241 VEAFNLKAAIE-YQLRNYEAAQEALTDMPPRAEEE----LDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFA 314 (459)
T ss_pred HHHhhhhhhhh-hhcccHHHHHHHhhcCCCccccc----CCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHH
Confidence 23333333333 47788888877654332111000 1233333333221 346788888888888888886667777
Q ss_pred HHHHHHhhccchhHHHHHH
Q 036703 330 KYTELEKSLDETERARAIF 348 (365)
Q Consensus 330 ~~~~~~~~~g~~~~A~~~~ 348 (365)
++..++.+..-++.|..++
T Consensus 315 NlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHHHHhhhHHHhHHHHHH
Confidence 7777777777677666654
No 156
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.11 E-value=6.3e-07 Score=72.93 Aligned_cols=148 Identities=16% Similarity=0.079 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCch
Q 036703 103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDRE 182 (365)
Q Consensus 103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 182 (365)
...|+..-..+++. .|+- ...-..-+..+. +.|+..++-.+++.+-+..|. ..++..|... +.|+..
T Consensus 245 p~~Ar~~A~~a~KL-~pdl----vPaav~AAralf---~d~~~rKg~~ilE~aWK~ePH---P~ia~lY~~a--r~gdta 311 (531)
T COG3898 245 PASARDDALEANKL-APDL----VPAAVVAARALF---RDGNLRKGSKILETAWKAEPH---PDIALLYVRA--RSGDTA 311 (531)
T ss_pred hHHHHHHHHHHhhc-CCcc----chHHHHHHHHHH---hccchhhhhhHHHHHHhcCCC---hHHHHHHHHh--cCCCcH
Confidence 33444444444444 3332 444455667777 899999999999999998887 4677777653 555532
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhh
Q 036703 183 GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262 (365)
Q Consensus 183 ~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 262 (365)
. ...+-..+.-.+.|++.+..+..++.....|++..|+.--+.+....|... +++.++.+.+.
T Consensus 312 ~-------dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres----------~~lLlAdIeeA 374 (531)
T COG3898 312 L-------DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES----------AYLLLADIEEA 374 (531)
T ss_pred H-------HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh----------HHHHHHHHHhh
Confidence 1 112223344457899999999999999999999999999999999999864 67778888877
Q ss_pred ccCChhHHHHHHHHHHhc
Q 036703 263 DAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 263 ~~~~~~~a~~~~~~a~~~ 280 (365)
..|+-.+++..+.++++.
T Consensus 375 etGDqg~vR~wlAqav~A 392 (531)
T COG3898 375 ETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccCchHHHHHHHHHHhcC
Confidence 889999999999999987
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.11 E-value=4.3e-10 Score=73.85 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=62.3
Q ss_pred cCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHH
Q 036703 33 LGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNV 109 (365)
Q Consensus 33 ~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 109 (365)
+|+++.|+..|+++++..|. ...|..+|.++.+.|++++|..++++ ...+|.++.....+|.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888888888873 45677788888888888888888888 777777777777778888888888888888
Q ss_pred HHHH
Q 036703 110 YECA 113 (365)
Q Consensus 110 ~~~a 113 (365)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8764
No 158
>PRK11906 transcriptional regulator; Provisional
Probab=99.09 E-value=2.6e-08 Score=83.53 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=126.7
Q ss_pred HHHhCCCch---HHH----HHHHHHHHhcCC---hhHHHHHHHHHH---hhCCC-hHHHHHHHHHHHH---------hcc
Q 036703 12 VVTLSPRVD---QLW----NNYIRMEENLGN---VAGARQIFERWM---HWMPD-HEGWLSYIKFKLR---------YNE 68 (365)
Q Consensus 12 ~l~~~p~~~---~~~----~~~~~~~~~~g~---~~~A~~~~~~al---~~~p~-~~~~~~~~~~~~~---------~~~ 68 (365)
+...-|.+. ++| +..|......+. .+.|..+|.+++ .++|+ ..++..++.++.. ..+
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 344446666 666 444555555543 456889999999 99998 5555555555432 235
Q ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHH
Q 036703 69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRA 148 (365)
Q Consensus 69 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 148 (365)
..+|...-+++++.+|.|+.+...+|.+..-.++++.|...|++++.. .|+. ..+|+..|.+.. -.|+.++|
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-~Pn~----A~~~~~~~~~~~---~~G~~~~a 391 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH-STDI----ASLYYYRALVHF---HNEKIEEA 391 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-CCcc----HHHHHHHHHHHH---HcCCHHHH
Confidence 678999999999999999999999999999999999999999999999 9988 999999999999 99999999
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703 149 RCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179 (365)
Q Consensus 149 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 179 (365)
++.++++++..|......+....+..+...+
T Consensus 392 ~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 392 RICIDKSLQLEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence 9999999999998654555555555554444
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.08 E-value=1.2e-09 Score=71.77 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=70.7
Q ss_pred hccHHHHHHHHHHHHHhCCc--chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703 66 YNEVQRARHIFERLVQCHPY--NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK 143 (365)
Q Consensus 66 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (365)
+|+++.|+.+|+++++..|. +...|..+|.++.+.|++++|+.++++ .+. .|.+ ......+|.++. ..|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~~~----~~~~~l~a~~~~---~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DPSN----PDIHYLLARCLL---KLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HHCH----HHHHHHHHHHHH---HTT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CCCC----HHHHHHHHHHHH---HhC
Confidence 68999999999999999995 567788899999999999999999999 767 6655 778888899999 999
Q ss_pred hhHHHHHHHHHH
Q 036703 144 ETDRARCIYKFA 155 (365)
Q Consensus 144 ~~~~A~~~~~~~ 155 (365)
++++|+++|+++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999999875
No 160
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-08 Score=83.38 Aligned_cols=287 Identities=10% Similarity=0.041 Sum_probs=188.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHH------HHhCCcchHHHHHHHH
Q 036703 27 IRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERL------VQCHPYNLSAWINFAD 95 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~------l~~~p~~~~~~~~~~~ 95 (365)
|.-+++.|+....+.+|+.|++.-.+ ..++..++..|...++|++|.++...= +...-.....--.+|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 56677899999999999999998776 457888999999999999998875432 2222223445567788
Q ss_pred HHHhhcchHHHHHHHHHHHhhhhcC--ChhhHHHHHHHHHHHHHhccccchh-------------HHHHHHHHHHhccCC
Q 036703 96 FEMKMGEVDRARNVYECAVEIFLAD--DHDEAEQLFVAFAKFEEMGCNCKET-------------DRARCIYKFALDRIP 160 (365)
Q Consensus 96 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~~l~~~p 160 (365)
.+.-.|.+++|+.+..+-+.. ... +......++++++.+|- ..|+- +++...++.+.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~-areLgDrv~e~RAlYNlgnvYh---akGk~~g~~~pee~g~f~~ev~~al~~Av---- 175 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDF-ARELGDRVLESRALYNLGNVYH---AKGKCTGLEAPEEKGAFNAEVTSALENAV---- 175 (639)
T ss_pred hhhhhcccchHHHHHHHHhHH-HHHHhHHHhhhHHHhhhhhhhh---hcccccCCCChhhcccccHHHHHHHHHHH----
Confidence 888999999999988776654 211 11223678888888887 55431 22333333322
Q ss_pred CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---
Q 036703 161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANV--- 237 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--- 237 (365)
++|..-..+....|+.. .-..++-.+|..|.-.|+++.|+..-+.-+.+.
T Consensus 176 -----~fy~eNL~l~~~lgDr~----------------------aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef 228 (639)
T KOG1130|consen 176 -----KFYMENLELSEKLGDRL----------------------AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF 228 (639)
T ss_pred -----HHHHHHHHHHHHhhhHH----------------------hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh
Confidence 12222222222222110 012345667777777899999888777655542
Q ss_pred CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703 238 PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKY 317 (365)
Q Consensus 238 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 317 (365)
.+.... -..+.+++..+ .-.|+++.|.+.|++.+.+......---....-+.+++.|.-..++++|+.++.+-
T Consensus 229 GDrAae------RRA~sNlgN~h-iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 229 GDRAAE------RRAHSNLGNCH-IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred hhHHHH------HHhhcccchhh-hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 221110 12445566665 46789999999999988764333211012556677888888889999999999987
Q ss_pred HhhCc------chHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 318 LEWSP------ENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 318 l~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
+.+.. .....+..+++.+...|..++|....+..++..
T Consensus 302 LaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 302 LAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 76532 234678889999999999999998888776543
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.08 E-value=8.9e-09 Score=86.62 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703 22 LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG 101 (365)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 101 (365)
+-..+..+....++++.|+.+|++..+.+|+. +..++.++...++-.+|..++.+++..+|.+..++...+.++.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 34456677777899999999999999988873 4457888888899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703 102 EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA 155 (365)
Q Consensus 102 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 155 (365)
+++.|+++.+++++. .|.+ ...|..++.+|. ..|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l-sP~~----f~~W~~La~~Yi---~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL-SPSE----FETWYQLAECYI---QLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh-Cchh----HHHHHHHHHHHH---hcCCHHHHHHHHhcC
Confidence 999999999999999 9988 999999999999 999999999887743
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.07 E-value=1.2e-09 Score=67.86 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=32.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 59 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. .|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL-DPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcC
Confidence 3444555555555555555555555555555555555555555555555555555555 444
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.06 E-value=1.9e-08 Score=88.60 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=113.5
Q ss_pred HHHHhCCCchHHHHHHHH--HHHhcCC---hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh--------ccHHHHHHHH
Q 036703 11 RVVTLSPRVDQLWNNYIR--MEENLGN---VAGARQIFERWMHWMPD-HEGWLSYIKFKLRY--------NEVQRARHIF 76 (365)
Q Consensus 11 ~~l~~~p~~~~~~~~~~~--~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~--------~~~~~A~~~~ 76 (365)
++....|.+..+|-.+.+ .+...++ ...|+.+|+++++.+|+ ..+|-.++.++... ++...+....
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 334456788888766544 4444433 67899999999999999 56665555444322 2345667777
Q ss_pred HHHHHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703 77 ERLVQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF 154 (365)
Q Consensus 77 ~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 154 (365)
.+++.. +|.++.++..+|......|++++|...+++++.. .| + ...|..+|.++. ..|++++|.+.|++
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~p-s----~~a~~~lG~~~~---~~G~~~eA~~~~~~ 478 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-EM-S----WLNYVLLGKVYE---LKGDNRLAADAYST 478 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-C----HHHHHHHHHHHH---HcCCHHHHHHHHHH
Confidence 776664 6777888999999999999999999999999999 87 4 789999999999 99999999999999
Q ss_pred HhccCCCch
Q 036703 155 ALDRIPKGR 163 (365)
Q Consensus 155 ~l~~~p~~~ 163 (365)
|+...|..+
T Consensus 479 A~~L~P~~p 487 (517)
T PRK10153 479 AFNLRPGEN 487 (517)
T ss_pred HHhcCCCCc
Confidence 999999875
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.04 E-value=8.3e-09 Score=82.50 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=94.6
Q ss_pred HHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703 54 EGWLSYIKFK-LRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129 (365)
Q Consensus 54 ~~~~~~~~~~-~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 129 (365)
..++..+..+ ...|++++|+..|++.+..+|++ +.+++.+|.++...|++++|+..|+++++. .|++ +..+.++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s-~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKS-PKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCC-cchhHHH
Confidence 5566666544 56799999999999999999987 579999999999999999999999999999 9986 7779999
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
+.+|.++. ..|+.++|+.+|+++++..|++.
T Consensus 221 ~klg~~~~---~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQ---DKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999 99999999999999999999874
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=2.3e-08 Score=75.59 Aligned_cols=95 Identities=15% Similarity=-0.003 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 129 (365)
...+..++..+...|++++|...|++++...|+. ..++..+|.++...|++++|+..++++++. .|.+ ...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-NPKQ----PSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cccc----HHHH
Confidence 3467778888888888888888888888876643 467888888888888888888888888888 7776 7777
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHH
Q 036703 130 VAFAKFEEMGCNCKETDRARCIYKFA 155 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~ 155 (365)
..+|.++. ..|+...+...++.+
T Consensus 110 ~~lg~~~~---~~g~~~~a~~~~~~A 132 (172)
T PRK02603 110 NNIAVIYH---KRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHHH---HcCChHhHhhCHHHH
Confidence 88888887 777665555444443
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.03 E-value=3.2e-08 Score=68.59 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---chHHHHHH
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY---NLSAWINF 93 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~ 93 (365)
.+++.++..+-..|+.++|+..|++++...++ ..+++.++..+...|++++|..++++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46788899999999999999999999986554 568899999999999999999999999999888 77888888
Q ss_pred HHHHHhhcchHHHHHHHHHHHhh
Q 036703 94 ADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+..+...|+.++|+..+-.++..
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999988777654
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.02 E-value=5.9e-09 Score=78.61 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHH
Q 036703 222 NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEM 300 (365)
Q Consensus 222 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 300 (365)
.+..+...+...++..+.+.. ...|...+..+ ...|++++|+..|++++...++. +. +..+..+|.+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~-------a~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~----~~~~~~~~~lg~~ 81 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKE-------AFTYYRDGMSA-QSEGEYAEALQNYYEAMRLEIDP----YDRSYILYNIGLI 81 (168)
T ss_pred ccccchhhhhHhccCCchhHH-------HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccccc----hhhHHHHHHHHHH
Confidence 355566666555555554433 45777788876 58899999999999999886431 12 4588999999
Q ss_pred HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh-------hccchh-------HHHHHHHHHhcCcCCCCCc
Q 036703 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK-------SLDETE-------RARAIFELAIAQPILDLPE 361 (365)
Q Consensus 301 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------~~g~~~-------~A~~~~~~a~~~~~~~~p~ 361 (365)
+...|++++|+..|++++..+|.+...+..++.++. ..|+++ +|...|++++..+|.+.|+
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 999999999999999999999999999999998888 666655 7777777888888865544
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.02 E-value=2.4e-09 Score=66.45 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=58.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703 25 NYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL 87 (365)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 87 (365)
.+|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5789999999999999999999999999 89999999999999999999999999999999875
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.01 E-value=3.8e-08 Score=80.73 Aligned_cols=205 Identities=13% Similarity=0.123 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------c
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY------N 86 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~ 86 (365)
.+.+..-|..+...|++++|...|.++....-. ...+...+.++.+. ++++|+..|++++...-. -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 455777889999999999999999999764321 34566666776555 999999999999985321 2
Q ss_pred hHHHHHHHHHHHhh-cchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 87 LSAWINFADFEMKM-GEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 87 ~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
..++..+|.++... |++++|++.|++|++. .... ...........+.++. ..|++++|++.|++.....-.+.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~-y~~e~~~~~a~~~~~~~A~l~~---~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAEL-YEQEGSPHSAAECLLKAADLYA---RLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHH-HHHTT-HHHHHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHCCChhhHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHhhccc
Confidence 56788999999998 9999999999999998 5433 2233567788999999 99999999999999887543321
Q ss_pred -----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHH--HhCCHHHHHHHHH
Q 036703 164 -----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-----DTWFDYIRLEE--RVGNQERVREVYE 231 (365)
Q Consensus 164 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-----~~~~~~~~~~~--~~~~~~~A~~~~~ 231 (365)
....+...+.++...|+.- .|...+++....+|... .+...+...+. ....++.++.-|.
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v--------~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYV--------AARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HH--------HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred ccchhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 2235555566677777744 68899999998888542 23444444443 2234555655555
Q ss_pred HHHhcC
Q 036703 232 RAIANV 237 (365)
Q Consensus 232 ~~~~~~ 237 (365)
...+.+
T Consensus 262 ~~~~ld 267 (282)
T PF14938_consen 262 SISRLD 267 (282)
T ss_dssp TSS---
T ss_pred ccCccH
Confidence 544433
No 170
>PRK11906 transcriptional regulator; Provisional
Probab=99.01 E-value=3.2e-08 Score=82.97 Aligned_cols=149 Identities=8% Similarity=-0.009 Sum_probs=122.3
Q ss_pred hhhHHHHHHHHH---HhCCCchHHHHHHHHHHHhc---------CChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc
Q 036703 2 IDHGRNAWDRVV---TLSPRVDQLWNNYIRMEENL---------GNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE 68 (365)
Q Consensus 2 ~~~A~~~~~~~l---~~~p~~~~~~~~~~~~~~~~---------g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~ 68 (365)
.+.|..+|.+++ .++|....+|..++.++... .+..+|.+..+++++++|. +.+...+|......++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 357889999999 99999999999998887754 2455789999999999999 7788888888888899
Q ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHH
Q 036703 69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRA 148 (365)
Q Consensus 69 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 148 (365)
++.|...|++++..+|+.+.+|...|.+..-.|+.++|++.++++++. .|.. ....+.......|. ....+.|
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL-sP~~--~~~~~~~~~~~~~~----~~~~~~~ 426 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL-EPRR--RKAVVIKECVDMYV----PNPLKNN 426 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-Cchh--hHHHHHHHHHHHHc----CCchhhh
Confidence 999999999999999999999999999999999999999999999999 8865 11223333343454 4457777
Q ss_pred HHHHHHHhc
Q 036703 149 RCIYKFALD 157 (365)
Q Consensus 149 ~~~~~~~l~ 157 (365)
+++|-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 777765443
No 171
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.00 E-value=1.5e-08 Score=85.24 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=101.2
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
+++.|+.+|++..+.+|+ +...+++++...++..+|++++.++++..|. ..++...+.++...++++.|..+.+++
T Consensus 184 ~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 368899999999998876 5667899999999999999999999999998 788889999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHH
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECA 113 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 113 (365)
+...|++...|..++.+|.+.|+++.|+-.+..+
T Consensus 261 v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 261 VELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999776643
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.00 E-value=1.2e-08 Score=89.90 Aligned_cols=118 Identities=7% Similarity=0.070 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhc--------CChhHHHHHHHHHHhh--CCC-hHHHHHHHHHHHHhccHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENL--------GNVAGARQIFERWMHW--MPD-HEGWLSYIKFKLRYNEVQ 70 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~--------g~~~~A~~~~~~al~~--~p~-~~~~~~~~~~~~~~~~~~ 70 (365)
+..|+.+|+++++.+|++..+|..++.++... ++...+....++++.. +|. +.++..++......|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 56899999999999999999998887766543 1234566666776664 444 677888888888899999
Q ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 71 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+|...+++++..+| +...|..+|.++...|+.++|.+.|++|+.. .|..
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L-~P~~ 486 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL-RPGE 486 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Confidence 99999999999999 6889999999999999999999999999999 9886
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=98.99 E-value=1.1e-08 Score=73.65 Aligned_cols=102 Identities=11% Similarity=0.020 Sum_probs=94.8
Q ss_pred hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703 15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF 93 (365)
Q Consensus 15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 93 (365)
+.++.-+..+.+|--+...|++++|..+|.-+...+|. .+.|..+|.++...+++++|+..|..+....++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34445666788899999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhh
Q 036703 94 ADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
|+++...|+.+.|+.+|+.++..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999999999986
No 174
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2e-06 Score=76.60 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHH----------HHhCCc----------chHHHHHHHHHHHhhcchHHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERL----------VQCHPY----------NLSAWINFADFEMKMGEVDRARNVYEC 112 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~----------l~~~p~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 112 (365)
..++..++..+...+|.+.|++.|+++ +..+|. ++.+|.-+|+.....|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 357888898888999999999999873 344443 567888999999999999999999999
Q ss_pred HHhhhhcCC-----------------hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703 113 AVEIFLADD-----------------HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL 156 (365)
Q Consensus 113 a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 156 (365)
|-.. +.-- ...+..+-+.+|+.|. ..|++.+|...|.++-
T Consensus 938 A~D~-fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE---n~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKDY-FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE---NDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhh-hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Confidence 8765 2211 1112456677888888 9999999998887653
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.95 E-value=6.5e-08 Score=77.42 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=90.7
Q ss_pred hHHHHHHHHHH-HhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHH
Q 036703 20 DQLWNNYIRME-ENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWI 91 (365)
Q Consensus 20 ~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~ 91 (365)
...++..+..+ ...|++++|+..|+..++..|+ +.+++.+|.++...|+++.|...|++++..+|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35666666655 6679999999999999999998 4789999999999999999999999999998874 78889
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 92 NFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 92 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
.+|.++...|+.++|+..|+++++. .|++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~-yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK-YPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CcCC
Confidence 9999999999999999999999999 9986
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.95 E-value=1.3e-05 Score=65.58 Aligned_cols=292 Identities=16% Similarity=0.070 Sum_probs=200.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhh-CCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH-HHHHHHHHHhhcc
Q 036703 27 IRMEENLGNVAGARQIFERWMHW-MPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA-WINFADFEMKMGE 102 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~-~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~ 102 (365)
|.+....|+-..|++.-.++-++ ..+ +-+.+.-++...-.|+++.|++-|+.++. +|..-.+ ...+-.--.+.|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhccc
Confidence 34444567888899888887743 333 33333445666678999999999987764 3422221 1111122335799
Q ss_pred hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc---CCCc--hhHHHHHHHHHHHHH
Q 036703 103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR---IPKG--RAEDLYRKFLAFEKQ 177 (365)
Q Consensus 103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~--~~~~~~~~~~~~~~~ 177 (365)
.+.|+.+-+++-.. .|.- +-.+.....-.. ..|+++.|+++.+..... .+.. ...-+...---...-
T Consensus 170 reaAr~yAe~Aa~~-Ap~l----~WA~~AtLe~r~---~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 170 REAARHYAERAAEK-APQL----PWAARATLEARC---AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHHHHHHHHHhh-ccCC----chHHHHHHHHHH---hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 99999999999998 8776 556665555556 789999999999865542 1211 111111111111112
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703 178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA 257 (365)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 257 (365)
..+.. .|+..-..++++.|+....-..-+..+...|+..++-.+++.+-+..|.-. ++..|.
T Consensus 242 dadp~--------~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~----------ia~lY~ 303 (531)
T COG3898 242 DADPA--------SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD----------IALLYV 303 (531)
T ss_pred cCChH--------HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH----------HHHHHH
Confidence 22222 578888899999999999888899999999999999999999999988742 555554
Q ss_pred HHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703 258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 336 (365)
.. +.|+ .++.-++++-++..-. |+ .+.....+......|++..|+.--+.+....| ...++..++.++.
T Consensus 304 ~a---r~gd--ta~dRlkRa~~L~slk----~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIee 373 (531)
T COG3898 304 RA---RSGD--TALDRLKRAKKLESLK----PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEE 373 (531)
T ss_pred Hh---cCCC--cHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHh
Confidence 33 4454 3444444444331100 33 55566777778889999999999999999999 5677888999988
Q ss_pred hc-cchhHHHHHHHHHhcCc
Q 036703 337 SL-DETERARAIFELAIAQP 355 (365)
Q Consensus 337 ~~-g~~~~A~~~~~~a~~~~ 355 (365)
.. ||-.+++..+.++++..
T Consensus 374 AetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hccCchHHHHHHHHHHhcCC
Confidence 76 99999999999999754
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.94 E-value=6.9e-09 Score=65.10 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=44.8
Q ss_pred HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 036703 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAK 134 (365)
Q Consensus 64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (365)
...|++++|+..|++++..+|++..++..++.++.+.|++++|...+++++.. .|++ +.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~----~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-DPDN----PEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-GTTH----HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCH----HHHHHHHhc
Confidence 35667777777777777777777777777777777777777777777777777 6664 555554443
No 178
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.92 E-value=4.1e-06 Score=67.38 Aligned_cols=223 Identities=18% Similarity=0.212 Sum_probs=172.5
Q ss_pred hhHHHHHHHHHHhCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHh--hCCC-hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPR--VDQLWNNYIRMEENLGNVAGARQIFERWMH--WMPD-HEGWLSYIKFKLRYNEVQRARHIFE 77 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~ 77 (365)
..+...+...+...+. ........+..+...+++..+...+...+. ..+. ...+...+......+++..+...+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455666777777666 367788888889999999999999999986 4555 6788888888989999999999999
Q ss_pred HHHHhCCcchHHHHHHHH-HHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703 78 RLVQCHPYNLSAWINFAD-FEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL 156 (365)
Q Consensus 78 ~~l~~~p~~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 156 (365)
+++...+.+......... ++...|+++.|...+.+++.. .|.. ..........+..+. ..++++.+...+.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-DPEL-NELAEALLALGALLE---ALGRYEEALELLEKAL 194 (291)
T ss_pred HHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc-cchHHHHHHhhhHHH---HhcCHHHHHHHHHHHH
Confidence 999988876565666666 788899999999999999776 6520 112555566666677 7889999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703 157 DRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236 (365)
Q Consensus 157 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 236 (365)
...+.. ....+......+...+... .+...+..++...|.....+...+..+...+..+.+...+.+++..
T Consensus 195 ~~~~~~-~~~~~~~~~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDD-DAEALLNLGLLYLKLGKYE--------EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCccc-chHHHHHhhHHHHHcccHH--------HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 887772 1345666666666666433 6889999999998887777777777766777899999999999998
Q ss_pred CCC
Q 036703 237 VPP 239 (365)
Q Consensus 237 ~p~ 239 (365)
.|.
T Consensus 266 ~~~ 268 (291)
T COG0457 266 DPD 268 (291)
T ss_pred Ccc
Confidence 886
No 179
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.3e-06 Score=66.09 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccch
Q 036703 267 LERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDET 341 (365)
Q Consensus 267 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 341 (365)
+..|.-+|+..-...+ |.+.+....+.+.+.+|++++|..+++.++..+++++++..++.-+-...|..
T Consensus 189 ~qdAfyifeE~s~k~~------~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTP------PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhHHHHHHHHhcccC------CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 4444444444444221 33444444444445555555555555555555555555555554444444443
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.90 E-value=7.4e-09 Score=64.98 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=46.5
Q ss_pred HhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703 31 ENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD 95 (365)
Q Consensus 31 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 95 (365)
...|++++|+..|++++..+|+ ..++..++.++...|++++|..++++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4567777777777777777776 6777777777777777777777777777777766666665554
No 181
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=5.6e-06 Score=73.82 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh--Ccc-hH
Q 036703 250 IYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW--SPE-NC 325 (365)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~-~~ 325 (365)
..+.-.++.++...+++.+.++.+....+.... .. ...|..++++....|+...++.++.+|+.. +|+ -.
T Consensus 461 ~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~------~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ 534 (881)
T KOG0128|consen 461 TEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG------GSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDAL 534 (881)
T ss_pred HHHHHHHHHHHHHHhhchhhhhHhhhccccCCc------chHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHH
Confidence 345566777765567889999998887776621 12 337899999999999999999999999865 454 34
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 326 YAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
.++..+-.++...|.++.....-++.+
T Consensus 535 ev~~~~~r~Ere~gtl~~~~~~~~~~~ 561 (881)
T KOG0128|consen 535 EVLEFFRRFEREYGTLESFDLCPEKVL 561 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhHHhhc
Confidence 678888889999998877665554443
No 182
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-07 Score=77.71 Aligned_cols=131 Identities=15% Similarity=0.250 Sum_probs=111.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhCC-------C---------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHWMP-------D---------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN 86 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 86 (365)
....|..+.+.|++..|...|++++..-+ + ....+.++-++.+.+++..|+....++|..+|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 45568899999999999999999987533 1 2357788999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhH-HHHHHHHHHhccCCC
Q 036703 87 LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETD-RARCIYKFALDRIPK 161 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~l~~~p~ 161 (365)
+.+.++-|..+...|+++.|+..|+++++. .|.+ -.+-..+..+-. +..++. +..+.|.+++...+.
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~N----ka~~~el~~l~~---k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKL-EPSN----KAARAELIKLKQ---KIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999 9998 777777777766 555444 458888888876553
No 183
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=8.5e-06 Score=63.11 Aligned_cols=229 Identities=11% Similarity=-0.028 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCcch-HHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERL-VQCHPYNL-SAWINFADFE 97 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~p~~~-~~~~~~~~~~ 97 (365)
...-..+.+.|...|.+...+.....+- .|...+...++.+...-++.+.-..-+.+. ......+. .....-+.++
T Consensus 41 ~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 41 VELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred hHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 4444455555555555444333322221 122334445555544444444433333333 32222233 3444556778
Q ss_pred HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703 98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ 177 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 177 (365)
...|++++|.+..+.... .++...-..++. +..+++-|...++++.+...+.....+-..++.+...
T Consensus 119 ~~~~~~deAl~~~~~~~~----------lE~~Al~VqI~l---k~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGEN----------LEAAALNVQILL---KMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hcCCChHHHHHHHhccch----------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence 888899999888877332 334444455566 7778888888888888766553222233333333222
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703 178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA 257 (365)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 257 (365)
.+. +..|.-+|+..-+..|..+.+....+.+....|++++|..+++.++..++.+++ ...+..
T Consensus 186 gek--------~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe---------tL~Nli 248 (299)
T KOG3081|consen 186 GEK--------IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE---------TLANLI 248 (299)
T ss_pred chh--------hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH---------HHHHHH
Confidence 221 335778888888877888888888888888899999999999999998888765 444444
Q ss_pred HHHhhccCChhHHHH-HHHHHHhcc
Q 036703 258 LYKEVDAGDLERTRD-VYRTLFIFY 281 (365)
Q Consensus 258 ~~~~~~~~~~~~a~~-~~~~a~~~~ 281 (365)
..- ...|...++.+ .+.+....+
T Consensus 249 v~a-~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 249 VLA-LHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHH-HHhCCChHHHHHHHHHHHhcC
Confidence 442 35565544443 334444444
No 184
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.85 E-value=4.2e-05 Score=69.09 Aligned_cols=231 Identities=13% Similarity=0.092 Sum_probs=152.2
Q ss_pred hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHH
Q 036703 32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVY 110 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 110 (365)
..+++.+|.+...+.++.+|+ .-+-..-+-...+.|..++|..+++..-...+++..+.-.+-.+|...|+.++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 457899999999999999999 4444445667788999999998888777778888889999999999999999999999
Q ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh-HHHH
Q 036703 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE-DAIA 189 (365)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 189 (365)
++++.. +|.. ......+..+++... -...-..|.++|+ ..|.+. ..+|....-+......++... ...+
T Consensus 101 e~~~~~-~P~e-ell~~lFmayvR~~~---yk~qQkaa~~LyK----~~pk~~-yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 101 ERANQK-YPSE-ELLYHLFMAYVREKS---YKKQQKAALQLYK----NFPKRA-YYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHhh-CCcH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHH----hCCccc-chHHHHHHHHHHhccCCcccccchhH
Confidence 999999 9873 223333444444443 3334445666665 456653 457777665555544444433 2455
Q ss_pred HHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHh-cCCCchhhhHHHHhHHHHHHHHHHHhhccCC
Q 036703 190 GKMRLQYEDGVRKN-PMN-YDTWFDYIRLEERVGNQERVREVYERAIA-NVPPAEEKRYWQRYIYLWINYALYKEVDAGD 266 (365)
Q Consensus 190 ~~a~~~~~~~l~~~-p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (365)
-.|...+++.+... +-. ..-...+..++..+|++++|...+..-+. ..++... .+-.....++ ...++
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~--------~l~~~~~dll-k~l~~ 241 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL--------YLENKKLDLL-KLLNR 241 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch--------HHHHHHHHHH-HHhcC
Confidence 66788888888766 222 22234445556778999999999954433 3333221 1111222232 34556
Q ss_pred hhHHHHHHHHHHhcc
Q 036703 267 LERTRDVYRTLFIFY 281 (365)
Q Consensus 267 ~~~a~~~~~~a~~~~ 281 (365)
+.+..++..+.+...
T Consensus 242 w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 242 WQELFELSSRLLEKG 256 (932)
T ss_pred hHHHHHHHHHHHHhC
Confidence 666666666666554
No 185
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.6e-06 Score=77.14 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHH------------HHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIF------------ERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL 87 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 87 (365)
..+|-.++....+..+.+-|.-.+ .++.+ +|+ ..=...+-+....|-.++|..+|++.-..+
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 467888877777665554443322 22222 332 111234455566777788888887765433
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703 88 SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA 155 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 155 (365)
.+-.+|...|.+++|.++-+.--+. .-...++.++..+. ..++.+.|+++|+++
T Consensus 831 ----LlNKlyQs~g~w~eA~eiAE~~DRi-------HLr~Tyy~yA~~Le---ar~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 831 ----LLNKLYQSQGMWSEAFEIAETKDRI-------HLRNTYYNYAKYLE---ARRDIEAALEYYEKA 884 (1416)
T ss_pred ----HHHHHHHhcccHHHHHHHHhhccce-------ehhhhHHHHHHHHH---hhccHHHHHHHHHhc
Confidence 3445677788888887765543222 23568899999999 999999999999975
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.84 E-value=2.8e-05 Score=62.42 Aligned_cols=223 Identities=19% Similarity=0.213 Sum_probs=176.3
Q ss_pred cCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCcchHHHHHHHHHHHhhcchHHHH
Q 036703 33 LGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQ--CHPYNLSAWINFADFEMKMGEVDRAR 107 (365)
Q Consensus 33 ~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~A~ 107 (365)
.+....+...+...+...+. .......+..+...+++..+...+...+. ..+.....+...+......+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46777788888888887775 46677788888899999999999999997 67878899999999999999999999
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHH-HHHhccccchhHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHcCCchhhh
Q 036703 108 NVYECAVEIFLADDHDEAEQLFVAFAK-FEEMGCNCKETDRARCIYKFALDRIPK-GRAEDLYRKFLAFEKQYGDREGIE 185 (365)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~ 185 (365)
..+..++.. .+.+ ......... ++. ..|+++.|...|++++...|. .................++.
T Consensus 116 ~~~~~~~~~-~~~~----~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 183 (291)
T COG0457 116 ELLEKALAL-DPDP----DLAEALLALGALY---ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY---- 183 (291)
T ss_pred HHHHHHHcC-CCCc----chHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----
Confidence 999999987 6654 344444444 777 899999999999999886652 22233444444444444543
Q ss_pred HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc
Q 036703 186 DAIAGKMRLQYEDGVRKNPM-NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA 264 (365)
Q Consensus 186 ~~~~~~a~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (365)
..+...+.+++...|. ....+..++..+...+++..|...+..++...|... ..+...+..+. ..
T Consensus 184 ----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~ 249 (291)
T COG0457 184 ----EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA---------EALYNLALLLL-EL 249 (291)
T ss_pred ----HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccH---------HHHhhHHHHHH-Hc
Confidence 3699999999999999 689999999999999999999999999999998732 24444555543 66
Q ss_pred CChhHHHHHHHHHHhcc
Q 036703 265 GDLERTRDVYRTLFIFY 281 (365)
Q Consensus 265 ~~~~~a~~~~~~a~~~~ 281 (365)
+..+.+...+.+++...
T Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 250 GRYEEALEALEKALELD 266 (291)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 78999999999999887
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.80 E-value=5.1e-08 Score=62.11 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=31.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703 28 RMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA 89 (365)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 89 (365)
.++.+.+++++|+.++++++..+|+ +..|..+|.++...|++++|...|+++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 3444455555555555555555555 4455555555555555555555555555555544433
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.79 E-value=3.6e-07 Score=74.81 Aligned_cols=289 Identities=12% Similarity=0.037 Sum_probs=165.1
Q ss_pred hhhHHHHHHHHHHhCCCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHhhC---CC----hHHHHHHHHHHHHhccHH
Q 036703 2 IDHGRNAWDRVVTLSPRV----DQLWNNYIRMEENLGNVAGARQIFERWMHWM---PD----HEGWLSYIKFKLRYNEVQ 70 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~~~~~~~~~~~~ 70 (365)
+...+..|+.+++.-..+ ..+|..+|..|.-.+++++|.++-.-=+.+. .+ ...--.++......|.++
T Consensus 33 craGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fd 112 (639)
T KOG1130|consen 33 CRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFD 112 (639)
T ss_pred hhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccc
Confidence 345677899999886655 3456777788888888888877543322111 11 233345677778889999
Q ss_pred HHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcc-------------hHHHHHHHHHHHhhhhcCC---------h
Q 036703 71 RARHIFERLVQCHP------YNLSAWINFADFEMKMGE-------------VDRARNVYECAVEIFLADD---------H 122 (365)
Q Consensus 71 ~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~a~~~~~~~~---------~ 122 (365)
+|..+..+-+.... ....+++.+|.+|...|+ .+++...++.|++. ...+ .
T Consensus 113 eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f-y~eNL~l~~~lgDr 191 (639)
T KOG1130|consen 113 EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF-YMENLELSEKLGDR 191 (639)
T ss_pred hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH-HHHHHHHHHHhhhH
Confidence 99988877665422 245678889999887663 23444445554443 2221 0
Q ss_pred hhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 123 DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
......+-++|+.|. -.|+++.|+...+.-+.+ ....|+.. -+
T Consensus 192 ~aqGRa~GnLGNTyY---lLGdf~~ai~~H~~RL~i----------------a~efGDrA-----------------ae- 234 (639)
T KOG1130|consen 192 LAQGRAYGNLGNTYY---LLGDFDQAIHFHKLRLEI----------------AQEFGDRA-----------------AE- 234 (639)
T ss_pred HhhcchhcccCceee---eeccHHHHHHHHHHHHHH----------------HHHhhhHH-----------------HH-
Confidence 111334555666666 778888887765543321 12333311 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 036703 203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIAN----VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF 278 (365)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~ 278 (365)
-.++..+|.++.-.|+++.|.+.|.+.+.. -....+ ....+.++..| .-..++.+|+.++.+-+
T Consensus 235 ----RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE-------AQscYSLgNty-tll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 235 ----RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE-------AQSCYSLGNTY-TLLKEVQKAITYHQRHL 302 (639)
T ss_pred ----HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH-------HHHHHHhhhHH-HHHHHHHHHHHHHHHHH
Confidence 134556777777777788887777775543 111111 11334445554 25567778888877776
Q ss_pred hccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh-----Ccc-hHHHHHHHHHHHhhccc
Q 036703 279 IFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW-----SPE-NCYAWSKYTELEKSLDE 340 (365)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~~~~~~~~~g~ 340 (365)
.+..+.....-.......++..+...|..++|..+.+..++. +|. -.....++...-+..|.
T Consensus 303 aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 303 AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 663222111011344556777777778888887777776654 221 12344455555444443
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=2.2e-06 Score=64.16 Aligned_cols=196 Identities=16% Similarity=0.077 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
....+..|.+|-+.|-..-|+--|.+++.+.|. +..+.-+|-.+...|+++.|.+.|...++.+|...-+..+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 445667777777888888888888888888888 7788888888888888888888888888888887777777777666
Q ss_pred hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHH-HHHhccCCCchhHHHHHHHH-HHHH
Q 036703 99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIY-KFALDRIPKGRAEDLYRKFL-AFEK 176 (365)
Q Consensus 99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~~l~~~p~~~~~~~~~~~~-~~~~ 176 (365)
--|++.-|.+-+.+--+. .|++ ....+|..+.. ..-++.+|..-+ +++.... .+.|-..+ .++.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~-D~~D--PfR~LWLYl~E------~k~dP~~A~tnL~qR~~~~d-----~e~WG~~iV~~yL 210 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQD-DPND--PFRSLWLYLNE------QKLDPKQAKTNLKQRAEKSD-----KEQWGWNIVEFYL 210 (297)
T ss_pred ecCchHhhHHHHHHHHhc-CCCC--hHHHHHHHHHH------hhCCHHHHHHHHHHHHHhcc-----HhhhhHHHHHHHH
Confidence 678888888887777777 7765 22345554433 233556665544 3443322 12333332 2222
Q ss_pred HcCCchhhhHHHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMN-------YDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
..-. -...++++.....++ .+.++.+|..+...|+.++|..+|.-++..+--+
T Consensus 211 gkiS-----------~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 211 GKIS-----------EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred hhcc-----------HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 2211 112333433333333 3578889999999999999999999998875443
No 190
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.78 E-value=1.1e-06 Score=73.35 Aligned_cols=148 Identities=21% Similarity=0.328 Sum_probs=122.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCC------------hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHH
Q 036703 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGN------------VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRAR 73 (365)
Q Consensus 7 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~------------~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~ 73 (365)
.-|++.++.+|.+..+|+.++.+.-..-. .+.-+.++++|++.+|+ ..++..+.....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45889999999999999999988775532 34567799999999999 789999999999999999999
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhh---cchHHHHHHHHHHHhhhhcCC--------------hhhHHHHHHHHHHHH
Q 036703 74 HIFERLVQCHPYNLSAWINFADFEMKM---GEVDRARNVYECAVEIFLADD--------------HDEAEQLFVAFAKFE 136 (365)
Q Consensus 74 ~~~~~~l~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~~ 136 (365)
..+++++..+|+++.+|..+.++.... -.++..+..|.+++.. .... ......++..+..+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~-L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA-LSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH-HHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987763 3578889999998886 4322 112234566777778
Q ss_pred HhccccchhHHHHHHHHHHhcc
Q 036703 137 EMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
. ..|..+.|...++-.++.
T Consensus 165 ~---~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 165 R---QAGYTERAVALWQALLEF 183 (321)
T ss_pred H---HCCchHHHHHHHHHHHHH
Confidence 8 899999999999988874
No 191
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.1e-07 Score=75.36 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc------hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc
Q 036703 210 WFDYIRLEERVGNQERVREVYERAIANVPPA------EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS 283 (365)
Q Consensus 210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 283 (365)
...-|..+.+.|++..|...|++++...+.. .....-...+.++++++.++ ..++++..|+....++|...|.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~-lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY-LKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH-HhhhhHHHHHHHHHHHHhcCCC
Confidence 4456778889999999999999998764422 12222223456788888887 7999999999999999999852
Q ss_pred CCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccch-hHHHHHHHHHhcCcC
Q 036703 284 FSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDET-ERARAIFELAIAQPI 356 (365)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~a~~~~~ 356 (365)
+....+.-|.++...|+++.|+..|++++++.|+|-.+...+..+-.+..+. ++.+++|.+++...+
T Consensus 290 ------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 290 ------NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred ------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3666688899999999999999999999999999999999999888877664 455899999987765
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=4.6e-06 Score=62.51 Aligned_cols=201 Identities=11% Similarity=0.076 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
....+..|.+|-+.|-..-|+--|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++. .|.. .-+..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y----~Ya~lNR 139 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTY----NYAHLNR 139 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcc----hHHHhcc
Confidence 3455666777778888888999999999999999999999999999999999999999999999 8887 7777777
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHH-HHHHHHHcCCCCHHHHH
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRL-QYEDGVRKNPMNYDTWF 211 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~l~~~p~~~~~~~ 211 (365)
|.... -.|++.-|.+-+.+.-+.+|+++...+|.-+.+ ..-++. +|.. +.+++... +.+-|-
T Consensus 140 gi~~Y---Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~--------~A~tnL~qR~~~~---d~e~WG 202 (297)
T COG4785 140 GIALY---YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPK--------QAKTNLKQRAEKS---DKEQWG 202 (297)
T ss_pred ceeee---ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHH--------HHHHHHHHHHHhc---cHhhhh
Confidence 76666 679999999999998888998876677776554 333333 2333 33444433 223333
Q ss_pred HHH-HHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703 212 DYI-RLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY 281 (365)
Q Consensus 212 ~~~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 281 (365)
..+ .++ .|+.++ ..+++++.....++. .+-......+..++..+ ...|+.++|..+|+-++..+
T Consensus 203 ~~iV~~y--LgkiS~-e~l~~~~~a~a~~n~--~~Ae~LTEtyFYL~K~~-l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 203 WNIVEFY--LGKISE-ETLMERLKADATDNT--SLAEHLTETYFYLGKYY-LSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHH--HhhccH-HHHHHHHHhhccchH--HHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHh
Confidence 222 222 333322 345555555443332 22333455667778887 68999999999999998763
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.76 E-value=3.2e-06 Score=61.73 Aligned_cols=156 Identities=10% Similarity=0.071 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703 36 VAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARNVYECAV 114 (365)
Q Consensus 36 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 114 (365)
++....-..+.+...|...-...++......|++.+|+..|++++. ...+++.+...+++.....+++..|...+++..
T Consensus 72 P~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 72 PERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 3334444444455556666677889999999999999999999987 566788999999999999999999999999999
Q ss_pred hhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHH
Q 036703 115 EIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRL 194 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 194 (365)
+. .|. ..++...+.++..+. .+|.+..|+..|+.++...|+. .....|..+...+|...+.. .+...
T Consensus 152 e~-~pa--~r~pd~~Ll~aR~la---a~g~~a~Aesafe~a~~~ypg~---~ar~~Y~e~La~qgr~~ea~----aq~~~ 218 (251)
T COG4700 152 EY-NPA--FRSPDGHLLFARTLA---AQGKYADAESAFEVAISYYPGP---QARIYYAEMLAKQGRLREAN----AQYVA 218 (251)
T ss_pred hc-CCc--cCCCCchHHHHHHHH---hcCCchhHHHHHHHHHHhCCCH---HHHHHHHHHHHHhcchhHHH----HHHHH
Confidence 88 764 234677888899999 9999999999999999998884 45566677777777544321 13445
Q ss_pred HHHHHHHcCC
Q 036703 195 QYEDGVRKNP 204 (365)
Q Consensus 195 ~~~~~l~~~p 204 (365)
+++.+.+..|
T Consensus 219 v~d~~~r~~~ 228 (251)
T COG4700 219 VVDTAKRSRP 228 (251)
T ss_pred HHHHHHhcch
Confidence 5555555444
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=98.75 E-value=1.3e-07 Score=68.11 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA 133 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (365)
.....++.-....|++++|..+|+-+...+|.+++.|+.+|.++...+++++|+..|..+... .+++ +...+..|
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~~~d----p~p~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-LKND----YRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCC----CCccchHH
Confidence 455677777789999999999999999999999999999999999999999999999999999 8887 88999999
Q ss_pred HHHHhccccchhHHHHHHHHHHhcc
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
.++. ..|+.+.|+..|+.++..
T Consensus 113 qC~l---~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQL---LMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHH---HhCCHHHHHHHHHHHHhC
Confidence 9999 999999999999999984
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.74 E-value=1e-07 Score=60.69 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=58.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
..++.+.++++.|..++++++..+|+++..|...|.++...|++++|...++++++. .|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL-SPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-CCCc
Confidence 467889999999999999999999999999999999999999999999999999999 8886
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.73 E-value=5e-07 Score=62.65 Aligned_cols=99 Identities=20% Similarity=0.098 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV 130 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 130 (365)
.+++..+..+...|+.++|+..|++++...++. ..+++.++..+...|++++|..++++++.. +|++ +....+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~-~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDD-ELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCc-cccHHHHH
Confidence 467888999999999999999999999976543 568999999999999999999999999999 8883 23367777
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 131 AFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
.++..+. ..|+.++|++.+-.++.
T Consensus 80 f~Al~L~---~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALY---NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHH---HCCCHHHHHHHHHHHHH
Confidence 7888888 99999999999988775
No 197
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.70 E-value=2e-05 Score=61.24 Aligned_cols=180 Identities=16% Similarity=0.092 Sum_probs=118.5
Q ss_pred chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH
Q 036703 86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE 165 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 165 (365)
.+..|..-|....+.|++++|.+.|+.+... .|.+ +-...+.+.++..+. +.++++.|+...++.++..|.++..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-~p~s-~~~~qa~l~l~yA~Y---k~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-HPFS-PYSEQAQLDLAYAYY---KNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-cccHHHHHHHHHHHH---hcccHHHHHHHHHHHHHhCCCCCCh
Confidence 3566777777777788888888888888877 7775 555777777777777 8888888888888888888776533
Q ss_pred HHHHHHHHHHH---HcCCchhhhHHHHHHHHHHHHHHHHcCCCCH---HH--------------HHHHHHHHHHhCCHHH
Q 036703 166 DLYRKFLAFEK---QYGDREGIEDAIAGKMRLQYEDGVRKNPMNY---DT--------------WFDYIRLEERVGNQER 225 (365)
Q Consensus 166 ~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~---~~--------------~~~~~~~~~~~~~~~~ 225 (365)
+ |..|+.... ...+... +......|...|+..++..|++. ++ =..++.+|.+.|.+..
T Consensus 108 d-Y~~YlkgLs~~~~i~~~~r-Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 108 D-YAYYLKGLSYFFQIDDVTR-DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred h-HHHHHHHHHHhccCCcccc-CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 2 111211111 1111110 11123468888999999999873 11 1556788899999999
Q ss_pred HHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 226 VREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 226 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
|..-++++++..|...... ..+..+...+ ...|-.++|...-+ .+..
T Consensus 186 A~nR~~~v~e~y~~t~~~~------eaL~~l~eaY-~~lgl~~~a~~~~~-vl~~ 232 (254)
T COG4105 186 AINRFEEVLENYPDTSAVR------EALARLEEAY-YALGLTDEAKKTAK-VLGA 232 (254)
T ss_pred HHHHHHHHHhccccccchH------HHHHHHHHHH-HHhCChHHHHHHHH-HHHh
Confidence 9999999999988765421 2334444555 36777777765533 3443
No 198
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.70 E-value=2.9e-05 Score=62.92 Aligned_cols=313 Identities=12% Similarity=0.031 Sum_probs=195.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hH---HHHHHHHHHHHhccHHHHHHHHHH----HHHhCCc--chHHHHHH
Q 036703 24 NNYIRMEENLGNVAGARQIFERWMHWMPD-HE---GWLSYIKFKLRYNEVQRARHIFER----LVQCHPY--NLSAWINF 93 (365)
Q Consensus 24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~~~~~~~~~A~~~~~~----~l~~~p~--~~~~~~~~ 93 (365)
+.-|.-+....+.++|+..+.+.+..-.+ .. .+-.+.......|.++++...--. +.+.+.. -.+++..+
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455667788888888888765444 22 223334566677777765544332 2222221 24567777
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHH
Q 036703 94 ADFEMKMGEVDRARNVYECAVEIFLADDH-DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLY 168 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~ 168 (365)
+..+.+.-++.+++.+-+..+.. .+... ..-......++..+. ..+.++++++.|+.+++....+. ...++
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahl---gls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHL---GLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhh---hHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 77777777888888777766665 33321 112356667888888 89999999999999988543322 24566
Q ss_pred HHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC----CCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703 169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP----MNY------DTWFDYIRLEERVGNQERVREVYERAIANVP 238 (365)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p----~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 238 (365)
..++.+.-+..+.+ +|.....++..+-. ++. -+.+.++..+...|....|.+..+++.+..-
T Consensus 166 v~Lgslf~~l~D~~--------Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYE--------KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred hhHHHHHHHHHhhh--------HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 67777766665544 55555555554311 221 3456677778889999999999999987632
Q ss_pred CchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCC-----ccHHHH
Q 036703 239 PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNI-----DPCRKL 313 (365)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~A~~~ 313 (365)
.+.+... +......++.+| ...|+.+.|..-|+.|........+-+...+.....+.+.....-. =.|+++
T Consensus 238 ~~Gdra~---~arc~~~~aDIy-R~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 238 QHGDRAL---QARCLLCFADIY-RSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred HhCChHH---HHHHHHHHHHHH-HhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 2221111 233556688888 6999999999999999887433222111234444445444332222 347888
Q ss_pred HHHHHhhCcc------hHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 314 YEKYLEWSPE------NCYAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 314 ~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
-+++++.... -..+...++.+|...|..++-...+.++-
T Consensus 314 n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 314 NTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 7887776432 23577788899999998887777776654
No 199
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=3.7e-06 Score=70.59 Aligned_cols=326 Identities=10% Similarity=0.030 Sum_probs=192.1
Q ss_pred HHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHH-HhhCC------C---hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 12 VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERW-MHWMP------D---HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 12 ~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~p------~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
++-+..+++.+...-+..+...|++.+|.+.+... +...| . ...|..++.+..+.|.+.-+..+|.++++
T Consensus 232 vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 232 VMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 34444566777888899999999999999987553 22222 2 23678899999999999999999999995
Q ss_pred -h--------CC---------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703 82 -C--------HP---------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK 143 (365)
Q Consensus 82 -~--------~p---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (365)
. .| .+.++.+..|..+...|+.-.|.++|.++++. +-.+ |.+|..++.+.+|..+.|
T Consensus 312 N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~n----PrlWLRlAEcCima~~~~ 386 (696)
T KOG2471|consen 312 NSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRN----PRLWLRLAECCIMALQKG 386 (696)
T ss_pred HHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcC----cHHHHHHHHHHHHHhhhh
Confidence 1 11 24577888899999999999999999999999 8777 999999999887532222
Q ss_pred hhHHHHHHHHH---------------------HhccCCCch-hHHHHHHHHHHHHHcCC--------chhhhHHHH----
Q 036703 144 ETDRARCIYKF---------------------ALDRIPKGR-AEDLYRKFLAFEKQYGD--------REGIEDAIA---- 189 (365)
Q Consensus 144 ~~~~A~~~~~~---------------------~l~~~p~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~---- 189 (365)
-.++......+ ..-..|.+. .+..-..++.+..+.+- ...+.....
T Consensus 387 l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~ 466 (696)
T KOG2471|consen 387 LLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTK 466 (696)
T ss_pred hhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccc
Confidence 22222211111 000011110 01111111111111110 000000000
Q ss_pred -------------HHHHHHHHH-HHHcCCCCH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhh
Q 036703 190 -------------GKMRLQYED-GVRKNPMNY-----------DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR 244 (365)
Q Consensus 190 -------------~~a~~~~~~-~l~~~p~~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 244 (365)
....+.=.. .....|+++ .++-..+-+....||.-.|...-++.++...-+.
T Consensus 467 ~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~--- 543 (696)
T KOG2471|consen 467 EGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLSK--- 543 (696)
T ss_pred cCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhh---
Confidence 000000000 000011111 2334445556678999999998888887644443
Q ss_pred HHHHhHHHHHHHHHHHh----hccCChhHHHHHHHHHHh------c-----------------cccCCCcc------hh-
Q 036703 245 YWQRYIYLWINYALYKE----VDAGDLERTRDVYRTLFI------F-----------------YFSFSPRM------EE- 290 (365)
Q Consensus 245 ~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~~~a~~------~-----------------~~~~~~~~------~~- 290 (365)
++..++.+|. ....+..+|+..+.--+- . +|+....| ++
T Consensus 544 -------~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~ 616 (696)
T KOG2471|consen 544 -------IYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEE 616 (696)
T ss_pred -------HHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHH
Confidence 2222222221 245566666655543111 1 01111111 22
Q ss_pred --HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc--chHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 291 --RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP--ENCYAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 291 --~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
..++..++..+.-.|++++|++++..+..+-| .++.+.....-+....|+...|...+++.-
T Consensus 617 Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 617 ARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 45788889999999999999999999988877 456666666666778899999988887653
No 200
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=5.1e-07 Score=70.52 Aligned_cols=103 Identities=13% Similarity=0.154 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 56 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
.+..+.-+...|++..|...|...++..|++ +.+.+-||+++..+|+++.|...|..+++. .|++ +..++.++.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s-~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKS-PKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCC-CCChHHHHHH
Confidence 4555666667889999999999999999975 577888999999999999999999999999 9986 7789999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
|.+.. +.|+.++|..+|+++++..|...
T Consensus 222 g~~~~---~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 222 GVSLG---RLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHH---HhcCHHHHHHHHHHHHHHCCCCH
Confidence 99999 99999999999999999999864
No 201
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.67 E-value=8.3e-06 Score=63.28 Aligned_cols=158 Identities=15% Similarity=0.044 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH---HHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA---WIN 92 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~ 92 (365)
+..|+.-|.-.++.|++++|...|+.+...+|. ..+.+.++..+.+.++++.|+...++.+..+|+++.+ +..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 566888899999999999999999999999987 5788889999999999999999999999999987653 333
Q ss_pred HHHHHHh--------hcchHHHHHHHHHHHhhhhcCChhhHH--------------HHHHHHHHHHHhccccchhHHHHH
Q 036703 93 FADFEMK--------MGEVDRARNVYECAVEIFLADDHDEAE--------------QLFVAFAKFEEMGCNCKETDRARC 150 (365)
Q Consensus 93 ~~~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~A~~ 150 (365)
.|..+.. ..-...|...|+..+.. .|++ .-.+ .-=...|++|. +.|.+..|..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS-~Ya~dA~~~i~~~~d~LA~~Em~IaryY~---kr~~~~AA~n 188 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNS-RYAPDAKARIVKLNDALAGHEMAIARYYL---KRGAYVAAIN 188 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHH---HhcChHHHHH
Confidence 3333322 12345688889999999 9987 1111 11235678888 9999999999
Q ss_pred HHHHHhccCCCch-hHHHHHHHHHHHHHcCCch
Q 036703 151 IYKFALDRIPKGR-AEDLYRKFLAFEKQYGDRE 182 (365)
Q Consensus 151 ~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~ 182 (365)
-++.+++..|... ..+....+...+...|-.+
T Consensus 189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~ 221 (254)
T COG4105 189 RFEEVLENYPDTSAVREALARLEEAYYALGLTD 221 (254)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhCChH
Confidence 9999999877754 2334445556666677654
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.66 E-value=2.2e-05 Score=57.51 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=127.1
Q ss_pred HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
..=|++....-..+.+..-| ...-...++....+.|++.+|...|++++.-.+..+ +.+.+.+++..+ ..++
T Consensus 68 q~ldP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d----~a~lLglA~Aqf---a~~~ 139 (251)
T COG4700 68 QKLDPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD----AAMLLGLAQAQF---AIQE 139 (251)
T ss_pred HhcChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC----HHHHHHHHHHHH---hhcc
Confidence 33466777777777778888 667788999999999999999999999998756666 999999999999 9999
Q ss_pred hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHH
Q 036703 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQE 224 (365)
Q Consensus 145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 224 (365)
+..|...+++..+.+|...+++-...++..+...|.+. .|...|+.++...|+. .....++.++..+|+..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a--------~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA--------DAESAFEVAISYYPGP-QARIYYAEMLAKQGRLR 210 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch--------hHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchh
Confidence 99999999999998887666677788888888888765 5889999999988765 77788899999999887
Q ss_pred HHHHHHHHHHh
Q 036703 225 RVREVYERAIA 235 (365)
Q Consensus 225 ~A~~~~~~~~~ 235 (365)
++..-+....+
T Consensus 211 ea~aq~~~v~d 221 (251)
T COG4700 211 EANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHHHH
Confidence 77665555443
No 203
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.66 E-value=2.4e-05 Score=67.36 Aligned_cols=114 Identities=14% Similarity=0.053 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQC 82 (365)
Q Consensus 6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 82 (365)
......+++.+|.+..+...-+-.....|+..+|...+.+++.+.|. ..+.+.+|.++.+.|...+|--++..|+..
T Consensus 199 ~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~d 278 (886)
T KOG4507|consen 199 GHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDD 278 (886)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccC
Confidence 34455667777776555555555556689999999999999999887 467889999999999999999999888887
Q ss_pred CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703 83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
.|.-..-+..++.++...|.+......|..+.+. .|.
T Consensus 279 A~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~-~p~ 315 (886)
T KOG4507|consen 279 ADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA-RPG 315 (886)
T ss_pred CccccccceeHHHHHHHHhhhhhhhhhhhhhhcc-Ccc
Confidence 7765666888999999999999888888888887 554
No 204
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.66 E-value=2e-06 Score=60.64 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH---HHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS---AWIN 92 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~ 92 (365)
+..++.-|.-.++.|++++|++.|+.+....|. ..+-+.++..+...|+++.|+..+++.++++|.++. ++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 456788899999999999999999999999987 578888999999999999999999999999998754 5666
Q ss_pred HHHHHHhhcc---------------hHHHHHHHHHHHhhhhcCC
Q 036703 93 FADFEMKMGE---------------VDRARNVYECAVEIFLADD 121 (365)
Q Consensus 93 ~~~~~~~~~~---------------~~~A~~~~~~a~~~~~~~~ 121 (365)
.|..+..+.. ...|...|++.++. .|++
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~-yP~S 132 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR-YPNS 132 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH-CcCC
Confidence 6766666654 77899999999999 9986
No 205
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.61 E-value=2.6e-06 Score=66.66 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHH
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFAD 95 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~ 95 (365)
.+.-+--+...|++..|...|..-++..|+ +.+.+-|+.++..+|+++.|..+|..+.+..|++ ++..+.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 455566677889999999999999999998 6788889999999999999999999999988765 688999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 96 FEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 96 ~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+..+.|+.++|...|+++++. .|..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~-YP~t 248 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR-YPGT 248 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH-CCCC
Confidence 999999999999999999999 9987
No 206
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=1.1e-06 Score=64.11 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc---
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN----------VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN--- 67 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~--- 67 (365)
|+.|++.++.....+|.+++.+...|..+..+.+ +++|+.-|+.|+.++|+ ..+...+|..+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5678888888888888888887777766665432 33455566666666666 455555555554433
Q ss_pred --------cHHHHHHHHHHHHHhCCcc
Q 036703 68 --------EVQRARHIFERLVQCHPYN 86 (365)
Q Consensus 68 --------~~~~A~~~~~~~l~~~p~~ 86 (365)
.+++|...|+++...+|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 2444555555555555533
No 207
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.59 E-value=6.3e-05 Score=61.06 Aligned_cols=303 Identities=11% Similarity=0.084 Sum_probs=184.1
Q ss_pred hhhHHHHHHHHHHhCCCchHH---HHHHHHHHHhcCChhHHHHHH----HHHHhhCCC---hHHHHHHHHHHHHhccHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQL---WNNYIRMEENLGNVAGARQIF----ERWMHWMPD---HEGWLSYIKFKLRYNEVQR 71 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~g~~~~A~~~~----~~al~~~p~---~~~~~~~~~~~~~~~~~~~ 71 (365)
+++|+....+.+....+...= +-.++......|.++++...- +.+.+...+ -.++..+++.+.+.-++.+
T Consensus 22 ~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~k 101 (518)
T KOG1941|consen 22 TEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHK 101 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555443332222 222334455556665544432 333333333 3466677777777778888
Q ss_pred HHHHHHHHHHhCCcc-----hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh--hHHHHHHHHHHHHHhccccch
Q 036703 72 ARHIFERLVQCHPYN-----LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD--EAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 72 A~~~~~~~l~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 144 (365)
++.+-...+...... ......++..+...+.++++++.|+.|++. ...+.+ -...+...++.++. ...+
T Consensus 102 t~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~-A~~~~D~~LElqvcv~Lgslf~---~l~D 177 (518)
T KOG1941|consen 102 TISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY-AHNNDDAMLELQVCVSLGSLFA---QLKD 177 (518)
T ss_pred HHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-hhccCCceeeeehhhhHHHHHH---HHHh
Confidence 887776666543322 245667888888999999999999999987 433201 11467889999999 9999
Q ss_pred hHHHHHHHHHHhccCCCch--------hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc------CCCCHHHH
Q 036703 145 TDRARCIYKFALDRIPKGR--------AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK------NPMNYDTW 210 (365)
Q Consensus 145 ~~~A~~~~~~~l~~~p~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~------~p~~~~~~ 210 (365)
+++|.-+..++.....+-. .....+.++..+...|... .|.+..+.+.++ .|-.....
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg--------dA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG--------DAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc--------cHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9999999998887543211 1122233334444555543 355566555542 12234567
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC-----hhHHHHHHHHHHhccccCC
Q 036703 211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-----LERTRDVYRTLFIFYFSFS 285 (365)
Q Consensus 211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~a~~~~~~~~ 285 (365)
..++++|...|+.+.|..-|+.+......-.+ ++ ..+.+....+...+ ...- -=+|+++-++++++....+
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd-rm--gqv~al~g~Akc~~-~~r~~~k~~~Crale~n~r~levA~~IG 325 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMGTMASLGD-RM--GQVEALDGAAKCLE-TLRLQNKICNCRALEFNTRLLEVASSIG 325 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh-hH--HHHHHHHHHHHHHH-HHHHhhcccccchhHHHHHHHHHHHHhh
Confidence 78999999999999999999999876332111 00 01233444444332 1111 2347778788877753333
Q ss_pred CcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703 286 PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 320 (365)
.-+.--.+...++.+|...|.-++-.+.+.++-+.
T Consensus 326 ~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 326 AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 21112456778888998889988888888887554
No 208
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=2.6e-06 Score=62.87 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF 96 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 96 (365)
...=|.-++..|++++|..-|..|+..+|. .-++...+.+..+++..+.|+.-..++++++|....+..+.|..
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 445577788899999999999999999998 23566677888899999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 97 EMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
|.+...+++|+.-|+++++. .|..
T Consensus 178 yek~ek~eealeDyKki~E~-dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES-DPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999999 8876
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.56 E-value=3.4e-06 Score=59.53 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 129 (365)
+..+..-|.-....|++++|++.|+.+....|.. ..+.+.++..+.+.|++++|+..+++.++. .|.+ +..+-++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-hP~h-p~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-HPTH-PNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC-CCccHHH
Confidence 5667778888899999999999999999988854 578899999999999999999999999999 9996 6667777
Q ss_pred HHHHHHHHhccccch---------------hHHHHHHHHHHhccCCCch
Q 036703 130 VAFAKFEEMGCNCKE---------------TDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~ 163 (365)
+..|..+. .+.. ...|...|++.++..|++.
T Consensus 88 Y~~gL~~~---~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 88 YMRGLSYY---EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHH---HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 77776666 4443 6788888888888888864
No 210
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.55 E-value=1e-05 Score=67.56 Aligned_cols=156 Identities=21% Similarity=0.326 Sum_probs=113.7
Q ss_pred HHHHHhhhhcCChhhHHHHHHHHHHHHHhcc---------ccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703 110 YECAVEIFLADDHDEAEQLFVAFAKFEEMGC---------NCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180 (365)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 180 (365)
|++.++. .|.+ ...|+.++.+..... ...-.+..+.+|++|++.+|.+ ..++..+........+
T Consensus 8 l~~~v~~-~P~d----i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 8 LNRRVRE-NPHD----IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHh-Cccc----HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCC
Confidence 4455555 5555 666666655443000 1223567888999999999976 6788888887777665
Q ss_pred chhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCch---------hhhHHHH
Q 036703 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER---VGNQERVREVYERAIANVPPAE---------EKRYWQR 248 (365)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~p~~~---------~~~~~~~ 248 (365)
.+ +....+++++..+|++..+|..+.+.... .-.++..+..|.+++....... ....-..
T Consensus 81 ~~--------~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~ 152 (321)
T PF08424_consen 81 SE--------KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEF 152 (321)
T ss_pred HH--------HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Confidence 44 46677999999999999999999998654 3468899999999987633221 1123345
Q ss_pred hHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703 249 YIYLWINYALYKEVDAGDLERTRDVYRTLFIFY 281 (365)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 281 (365)
.+.+.+.+..++ .+.|-.+.|..+++..++.+
T Consensus 153 ~l~v~~r~~~fl-~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 153 MLYVFLRLCRFL-RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHH-HHCCchHHHHHHHHHHHHHH
Confidence 677888899997 69999999999999999884
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.53 E-value=1.7e-07 Score=52.52 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHH
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTE 333 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 333 (365)
|..+..++..+...|++++|+++|+++++.+|+++.+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578899999999999999999999999999999999999875
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.52 E-value=5.2e-07 Score=58.22 Aligned_cols=72 Identities=28% Similarity=0.353 Sum_probs=60.1
Q ss_pred CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh--hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIF--LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
|+-..++..+|.++...|++++|++.|+++++.. .+++++....++..+|.++. ..|++++|+++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~---~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY---RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh
Confidence 5567789999999999999999999999999761 33334455788999999999 999999999999999864
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.51 E-value=3.6e-07 Score=51.23 Aligned_cols=42 Identities=21% Similarity=0.462 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD 95 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 95 (365)
.+|..++..+...|++++|+.+|+++++.+|+++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666666666666666666666666666666665553
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.43 E-value=1.1e-05 Score=55.23 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=56.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHhhc
Q 036703 27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN----LSAWINFADFEMKMG 101 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~ 101 (365)
|......|+.+.|++.|.+++.+.|. ..++...+..+.-+|+.++|..-++++++...+. ...+...|.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34444556666666666666666666 5666666666666666666666666666654432 234556666666666
Q ss_pred chHHHHHHHHHHHhh
Q 036703 102 EVDRARNVYECAVEI 116 (365)
Q Consensus 102 ~~~~A~~~~~~a~~~ 116 (365)
+.+.|+.-|+.+.+.
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 666666666666544
No 215
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.42 E-value=7.3e-06 Score=56.07 Aligned_cols=97 Identities=21% Similarity=0.118 Sum_probs=85.4
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh
Q 036703 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138 (365)
Q Consensus 59 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (365)
-+-.....|+.+.|++.|.+++...|..+.++.+.++.+.-+|+.++|++-++++++. .++........+...|.+|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL-ag~~trtacqa~vQRg~lyR- 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL-AGDQTRTACQAFVQRGLLYR- 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh-cCccchHHHHHHHHHHHHHH-
Confidence 3455667899999999999999999999999999999999999999999999999999 65543445678888999999
Q ss_pred ccccchhHHHHHHHHHHhccC
Q 036703 139 GCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 139 ~~~~~~~~~A~~~~~~~l~~~ 159 (365)
.+|+-+.|+.-|+.+-+.-
T Consensus 127 --l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 --LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred --HhCchHHHHHhHHHHHHhC
Confidence 9999999999999887643
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.42 E-value=4e-06 Score=70.61 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=63.5
Q ss_pred hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703 15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLRYNEVQRARHIFERLVQCH 83 (365)
Q Consensus 15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 83 (365)
.+|+++.+|..+|..+...|++++|+..|+++++++|+ . .+|..++.++..+|++++|+..++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999 4 359999999999999999999999999973
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00044 Score=53.82 Aligned_cols=137 Identities=12% Similarity=0.118 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh
Q 036703 211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE 290 (365)
Q Consensus 211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 290 (365)
+.+..++...|++.-....+.+.++.+|.... .+...++..- ++.|+.+.|...|++.-+.......+--.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p--------~L~s~Lgr~~-MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP--------QLLSGLGRIS-MQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccH--------HHHHHHHHHH-HhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence 33444444445555555555555555433221 1333344442 45555555555555443332111111001
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
.-+..+.+-++...+++.+|...|.+++..+|.++.+-++-+.+.+-.|+...|.+..+.++...|
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 223333344444555555555555555555555555555555555555665566666555555555
No 218
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.40 E-value=0.0013 Score=58.87 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN 324 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 324 (365)
+++...++.+....|++++|-+.|-.+++++.-|
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 6778889999999999999999999999887543
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.36 E-value=1.4e-06 Score=56.21 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhh----C---cchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEW----S---PENCYAWSKYTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
...+..+|.++...|++++|+.+|+++++. . |....++.++|.++...|++++|.+.++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567889999999999999999999999966 2 223568889999999999999999999999864
No 220
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.36 E-value=0.00098 Score=57.06 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=109.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703 203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF 282 (365)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 282 (365)
.......|..++.+....|.++.|...+.++....+..... ...+.+..+.+. ...|+..+|+..++..+....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----~~~v~~e~akll-w~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----LPRVFLEYAKLL-WAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----CcchHHHHHHHH-HHcCCHHHHHHHHHHHHHHHh
Confidence 34456789999999999999999999999998865222100 022666778877 588999999999988887211
Q ss_pred cCC-------------------------Ccc-hh--HHHHHHHHHHHHHh------CCCccHHHHHHHHHhhCcchHHHH
Q 036703 283 SFS-------------------------PRM-EE--RRIFKKYIEMELCL------GNIDPCRKLYEKYLEWSPENCYAW 328 (365)
Q Consensus 283 ~~~-------------------------~~~-~~--~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~ 328 (365)
... ... .. ..++..+|...... +..+++...|..+++.+|+....|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence 100 000 01 56677777777777 889999999999999999999999
Q ss_pred HHHHHHHhhccc-----------------hhHHHHHHHHHhcCcCC
Q 036703 329 SKYTELEKSLDE-----------------TERARAIFELAIAQPIL 357 (365)
Q Consensus 329 ~~~~~~~~~~g~-----------------~~~A~~~~~~a~~~~~~ 357 (365)
..++.++...-+ ...|+..|-+++...+.
T Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 296 HSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999987765421 24577888888887774
No 221
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.32 E-value=2.5e-05 Score=57.14 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---
Q 036703 36 VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN----------EVQRARHIFERLVQCHPYNLSAWINFADFEMKMG--- 101 (365)
Q Consensus 36 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--- 101 (365)
++.|++.++.....+|. .+.++.+|..+.... -+++|+.-|++++.++|+...++..+|..+...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999 788888877665443 3567888899999999999999999999988765
Q ss_pred --------chHHHHHHHHHHHhhhhcCC
Q 036703 102 --------EVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 102 --------~~~~A~~~~~~a~~~~~~~~ 121 (365)
.+++|..+|++++.. .|.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~-~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDE-DPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH--TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 367788888888888 8876
No 222
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.31 E-value=7.1e-07 Score=46.53 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHH
Q 036703 8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQ 41 (365)
Q Consensus 8 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 41 (365)
+|+++++.+|+++.+|..+|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999998863
No 223
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=2e-05 Score=58.40 Aligned_cols=96 Identities=10% Similarity=0.124 Sum_probs=82.9
Q ss_pred ChhhHHHHHHHHHHhCCCc-----hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRV-----DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARH 74 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~ 74 (365)
.|+.|...|..||...|.. ..++...|.+.++++..+.|+.-+.++++++|. ..+....+..|.+...++.|+.
T Consensus 110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeale 189 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALE 189 (271)
T ss_pred cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHH
Confidence 4788999999999999875 345777888999999999999999999999999 7888888999999999999999
Q ss_pred HHHHHHHhCCcchHHHHHHHHH
Q 036703 75 IFERLVQCHPYNLSAWINFADF 96 (365)
Q Consensus 75 ~~~~~l~~~p~~~~~~~~~~~~ 96 (365)
-|.+++..+|....+--..+.+
T Consensus 190 DyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 190 DYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999666555444443
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.30 E-value=6.1e-07 Score=46.77 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=31.0
Q ss_pred HHHHHHhhCcchHHHHHHHHHHHhhccchhHHH
Q 036703 313 LYEKYLEWSPENCYAWSKYTELEKSLDETERAR 345 (365)
Q Consensus 313 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 345 (365)
+|+++++.+|+++.+|.++|.++...|+.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999986
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=5.2e-05 Score=60.90 Aligned_cols=152 Identities=14% Similarity=0.011 Sum_probs=119.9
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh-CCCh----HHHHHHHHHHHHhccHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW-MPDH----EGWLSYIKFKLRYNEVQRARHIF 76 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~~~~~~A~~~~ 76 (365)
+.+|-...++.+..+|.+..+|..--..+...|+.+.-+..+++.+.. +|+. -+--.|+-.+...|-+++|.+.-
T Consensus 119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A 198 (491)
T KOG2610|consen 119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQA 198 (491)
T ss_pred ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHH
Confidence 456777889999999999999988888899999999999999999865 7762 22335666778899999999999
Q ss_pred HHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703 77 ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL 156 (365)
Q Consensus 77 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 156 (365)
+++++++|.+.-+....+.++...|++.++.+...+.-.. -....--...-|-..+.++. ..+.++.|+++|.+-+
T Consensus 199 ~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~i---E~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 199 DRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHI---EGAEYEKALEIYDREI 274 (491)
T ss_pred HhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhh---cccchhHHHHHHHHHH
Confidence 9999999999888889999999999999999988776544 22210111223445677788 8899999999998755
Q ss_pred c
Q 036703 157 D 157 (365)
Q Consensus 157 ~ 157 (365)
-
T Consensus 275 ~ 275 (491)
T KOG2610|consen 275 W 275 (491)
T ss_pred H
Confidence 3
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.28 E-value=5.6e-06 Score=69.78 Aligned_cols=67 Identities=18% Similarity=0.056 Sum_probs=62.7
Q ss_pred CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH---HHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA---WINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+|+ ...|..++..+...|++++|+..|+++++.+|++..+ |.++|.+|..+|+.++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345 6799999999999999999999999999999998854 999999999999999999999999997
No 227
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.26 E-value=0.00088 Score=59.85 Aligned_cols=293 Identities=14% Similarity=0.097 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHH------Hh----hCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERW------MH----WMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS 88 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~a------l~----~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 88 (365)
.+|-.-|+++.+..++++|.++|++. ++ ..|. ..+-..++..+...|+++.|+..|-.+-.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~------- 734 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------- 734 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-------
Confidence 34445566666666777777766542 22 2454 33444556666677777777776654321
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHH
Q 036703 89 AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLY 168 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 168 (365)
............++.+|+.+++..-.. .. ....+-..+.-|. ..|+++.|.++|.++ .++
T Consensus 735 -~~kaieaai~akew~kai~ildniqdq-k~-----~s~yy~~iadhya---n~~dfe~ae~lf~e~----------~~~ 794 (1636)
T KOG3616|consen 735 -LIKAIEAAIGAKEWKKAISILDNIQDQ-KT-----ASGYYGEIADHYA---NKGDFEIAEELFTEA----------DLF 794 (1636)
T ss_pred -HHHHHHHHhhhhhhhhhHhHHHHhhhh-cc-----ccccchHHHHHhc---cchhHHHHHHHHHhc----------chh
Confidence 122223333455666666666554433 11 1334445556666 777888888777653 233
Q ss_pred HHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHH-------------HHhCCHHHHHHHHHHHH
Q 036703 169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN-YDTWFDYIRLE-------------ERVGNQERVREVYERAI 234 (365)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~-~~~~~~~~~~~-------------~~~~~~~~A~~~~~~~~ 234 (365)
...+.++-+.|.+.. |..+-+++. .|.. ...+..-++-. ...|.+++|+..|.+.-
T Consensus 795 ~dai~my~k~~kw~d--------a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~ 864 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWED--------AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHG 864 (1636)
T ss_pred HHHHHHHhccccHHH--------HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhC
Confidence 334444444444331 222221111 1211 12222222222 23344455555554321
Q ss_pred hcCCCchhhhHHH-----HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc-----ccCCCcchh--------------
Q 036703 235 ANVPPAEEKRYWQ-----RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY-----FSFSPRMEE-------------- 290 (365)
Q Consensus 235 ~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-----~~~~~~~~~-------------- 290 (365)
. ++...++.. ........++.-++ ..|+...|...|-++-... ...+.+|.+
T Consensus 865 ~---~ddmirlv~k~h~d~l~dt~~~f~~e~e-~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~ 940 (1636)
T KOG3616|consen 865 L---DDDMIRLVEKHHGDHLHDTHKHFAKELE-AEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAE 940 (1636)
T ss_pred c---chHHHHHHHHhChhhhhHHHHHHHHHHH-hccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHH
Confidence 0 010000000 01234455565554 6677776666554442220 111222200
Q ss_pred ----------------HHHHHHHH------HHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHH
Q 036703 291 ----------------RRIFKKYI------EMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIF 348 (365)
Q Consensus 291 ----------------~~~~~~~~------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 348 (365)
..+.+..| ++....+-|+-|..+-.-+.+ ...+.+...++.++...|++++|.+.|
T Consensus 941 k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhh
Confidence 11111111 111223334444443333332 235678889999999999999999999
Q ss_pred HHHhcCcC
Q 036703 349 ELAIAQPI 356 (365)
Q Consensus 349 ~~a~~~~~ 356 (365)
-.+++++.
T Consensus 1019 veaiklnt 1026 (1636)
T KOG3616|consen 1019 VEAIKLNT 1026 (1636)
T ss_pred HHHhhccc
Confidence 99998875
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00032 Score=54.55 Aligned_cols=147 Identities=12% Similarity=0.154 Sum_probs=108.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHH
Q 036703 57 LSYIKFKLRYNEVQRARHIFERLVQCH-PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFA 133 (365)
Q Consensus 57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~ 133 (365)
..++.+..-.|++.-....+.+.++.+ |.++.+...++.+.++.|+.+.|...|++.-+. ...- ......+..+.+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhh
Confidence 345666777889999999999999988 667889999999999999999999999976654 3211 112256677888
Q ss_pred HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH---HHH
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY---DTW 210 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~---~~~ 210 (365)
.++. .++++.+|...|.+++..+|.+....--.+++.++ .|+ ...|++..+.+++..|... .+.
T Consensus 260 ~i~l---g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~--------l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 260 FLHL---GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGK--------LKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred hhee---cccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHH--------HHHHHHHHHHHhccCCccchhhhHH
Confidence 8888 99999999999999999888864222223333333 333 2359999999999999753 444
Q ss_pred HHHHHHH
Q 036703 211 FDYIRLE 217 (365)
Q Consensus 211 ~~~~~~~ 217 (365)
+++..++
T Consensus 327 ~nL~tmy 333 (366)
T KOG2796|consen 327 FNLTTMY 333 (366)
T ss_pred HHHHHHH
Confidence 5555443
No 229
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.001 Score=50.95 Aligned_cols=187 Identities=16% Similarity=0.111 Sum_probs=115.7
Q ss_pred HHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CcchHHHHHHHHHHHhhcch
Q 036703 30 EENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCH------PYNLSAWINFADFEMKMGEV 103 (365)
Q Consensus 30 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~~~~~~~~~~~ 103 (365)
+.-.+++++|..+|.++-.. +....+++.|-..|.++-..+ .+....+...+.+|.+ ++.
T Consensus 24 fgg~~k~eeAadl~~~Aan~-------------yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~ 89 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANM-------------YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDP 89 (288)
T ss_pred cCCCcchHHHHHHHHHHHHH-------------HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cCh
Confidence 33445788999999888433 333333333333333333211 1134455666666655 489
Q ss_pred HHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHhccCCCchh----HHHHHHHHHHHH
Q 036703 104 DRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNC-KETDRARCIYKFALDRIPKGRA----EDLYRKFLAFEK 176 (365)
Q Consensus 104 ~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~ 176 (365)
++|..++++++++ +.+. .......+..+|.+|. .. .++++|+..|+++-.-...... ...+...+.+..
T Consensus 90 ~eAv~cL~~aieI-yt~~Grf~~aAk~~~~iaEiyE---sdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 90 EEAVNCLEKAIEI-YTDMGRFTMAAKHHIEIAEIYE---SDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred HHHHHHHHHHHHH-HHhhhHHHHHHhhhhhHHHHHh---hhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 9999999999988 6543 1112344557888887 44 8899999999998765443221 123333344433
Q ss_pred HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD-------TWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
..+. +.+|+.+|++.....-++.- -++.-|.++.-..+.-.+...+++-...+|.-.+
T Consensus 166 ~leq--------Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 166 QLEQ--------YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHH--------HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 4443 34799999998876555532 2445566666668888888889998888887543
No 230
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.25 E-value=2.2e-06 Score=68.70 Aligned_cols=228 Identities=11% Similarity=-0.080 Sum_probs=136.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE 136 (365)
Q Consensus 57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
...|+-|.++|.|++|+.+|.+++..+|.++..+.+.+..|.+.+.+..|..-.+.++.. .... ..+|...+..-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d~~Y----~KAYSRR~~AR 175 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-DKLY----VKAYSRRMQAR 175 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-hHHH----HHHHHHHHHHH
Confidence 445667788899999999999999999999999999999999999999999988888887 4332 56666667666
Q ss_pred HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHH-----
Q 036703 137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWF----- 211 (365)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~----- 211 (365)
. ..|...+|.+-++.++...|.+ .++-..+..+.. .. -..+.. +..|....+..
T Consensus 176 ~---~Lg~~~EAKkD~E~vL~LEP~~--~ELkK~~a~i~S----l~---------E~~I~~---KsT~G~~~A~Q~~~Q~ 234 (536)
T KOG4648|consen 176 E---SLGNNMEAKKDCETVLALEPKN--IELKKSLARINS----LR---------ERKIAT---KSTPGFTPARQGMIQI 234 (536)
T ss_pred H---HHhhHHHHHHhHHHHHhhCccc--HHHHHHHHHhcc----hH---------hhhHHh---hcCCCCCccccchhhh
Confidence 7 7889999999999999998886 334443333211 00 001111 11122111111
Q ss_pred ----HHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703 212 ----DYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287 (365)
Q Consensus 212 ----~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 287 (365)
.-|..+...|.++.++..+-+.+..+..+.. +-.. +..+ ....+++.++.-.-+++...++....
T Consensus 235 l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~---------L~~~-~~~~-~KI~~~~~~~~~~~~~~~~~~s~~~~ 303 (536)
T KOG4648|consen 235 LPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQ---------LRIS-DEDI-DKIFNSNCGIIEEVKKTNPKPTPMPD 303 (536)
T ss_pred ccccCcchhhhhhhccccceeEeeccccccCcccc---------Cccc-HHHH-HHHhhcchhHHHHHHhcCCCCCcCcc
Confidence 1233344556677777777666665544421 1111 1111 13334455555445555444332221
Q ss_pred chhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHH
Q 036703 288 MEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYA 327 (365)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 327 (365)
+ ..-+....-.|...++...++.++.+.|.+-..
T Consensus 304 ~------s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~ 337 (536)
T KOG4648|consen 304 T------SGPPKAETIAKTSKEVKPTKQTAVKVAPAVETP 337 (536)
T ss_pred c------CCCchhHHHHhhhhhcCcchhheeeeccccccc
Confidence 1 111122222456677777788888777765443
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.23 E-value=0.0002 Score=60.96 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc-CCCchhH
Q 036703 87 LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR-IPKGRAE 165 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~ 165 (365)
..+-..+|.+..+.|+.++|++.+...++. +|.. +...+..++...+. ..+.+.++..++.+-=+. .|.+ +
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke-~p~~--~~l~IrenLie~LL---elq~Yad~q~lL~kYdDi~lpkS--A 330 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKE-FPNL--DNLNIRENLIEALL---ELQAYADVQALLAKYDDISLPKS--A 330 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhh-CCcc--chhhHHHHHHHHHH---hcCCHHHHHHHHHHhccccCCch--H
Confidence 345567899999999999999999999998 7752 23668889999999 999999999999885332 2333 3
Q ss_pred HHHHHHHHHH-HHcCCchhhh-------HHHHHHHHHHHHHHHHcCCCCHHHHH
Q 036703 166 DLYRKFLAFE-KQYGDREGIE-------DAIAGKMRLQYEDGVRKNPMNYDTWF 211 (365)
Q Consensus 166 ~~~~~~~~~~-~~~~~~~~~~-------~~~~~~a~~~~~~~l~~~p~~~~~~~ 211 (365)
.+.+.-+.+. +..++.-..+ ..-...|.+.+.++++.||.-+.-++
T Consensus 331 ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 331 TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 3333222222 2222210000 00112477889999999998766543
No 232
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0026 Score=54.13 Aligned_cols=347 Identities=11% Similarity=0.090 Sum_probs=190.0
Q ss_pred ChhhHHHHHHHHHHh---CCCch----HHHHHHHHHHHhcC-ChhHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHhc
Q 036703 1 FIDHGRNAWDRVVTL---SPRVD----QLWNNYIRMEENLG-NVAGARQIFERWMHWMPDH-----EGWLSYIKFKLRYN 67 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~---~p~~~----~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~ 67 (365)
|++.|+..++++..+ -|+.. .+...++.++.... .+..|+..+.++++...+. .....++.+.....
T Consensus 62 N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk 141 (629)
T KOG2300|consen 62 NVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK 141 (629)
T ss_pred cHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc
Confidence 678899999999876 35542 45677888888877 7889999999999887663 44467788888888
Q ss_pred cHHHHHHHHHHHHH-hCCc---chHHHHHHH--HHHHh---hcchHHHHHHHHHHHhhhhcCChhhH-------------
Q 036703 68 EVQRARHIFERLVQ-CHPY---NLSAWINFA--DFEMK---MGEVDRARNVYECAVEIFLADDHDEA------------- 125 (365)
Q Consensus 68 ~~~~A~~~~~~~l~-~~p~---~~~~~~~~~--~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~------------- 125 (365)
|+..|.+.+.-... .+|- ...+.+.+. .+... ..+.+.+......+.+. ...+..+.
T Consensus 142 D~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~ 220 (629)
T KOG2300|consen 142 DFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLS 220 (629)
T ss_pred cchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHH
Confidence 99888887543211 1110 011111111 11111 11222223333333332 21110000
Q ss_pred -------------------------------------------HHHHHHH----HHHHH----hccccchhHHHHHHHHH
Q 036703 126 -------------------------------------------EQLFVAF----AKFEE----MGCNCKETDRARCIYKF 154 (365)
Q Consensus 126 -------------------------------------------~~~~~~~----~~~~~----~~~~~~~~~~A~~~~~~ 154 (365)
...|.-. +.+|. ...-.|-+++|.++-++
T Consensus 221 yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe 300 (629)
T KOG2300|consen 221 YYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDE 300 (629)
T ss_pred HHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHH
Confidence 0011000 00010 00123555555555555
Q ss_pred HhccC---CCch-hHHHHHHH--------HHHHHHcCCchhhhHHHHHHHHHHHHHHH---HcCCC-------CHHHHHH
Q 036703 155 ALDRI---PKGR-AEDLYRKF--------LAFEKQYGDREGIEDAIAGKMRLQYEDGV---RKNPM-------NYDTWFD 212 (365)
Q Consensus 155 ~l~~~---p~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~l---~~~p~-------~~~~~~~ 212 (365)
+|... |..+ ...+...+ +....-.|++. +|......+. ...|. .+.+...
T Consensus 301 ~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~--------~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~L 372 (629)
T KOG2300|consen 301 AIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYV--------EALEEIVDMKNWCTRFPTPLLLRAHEAQIHML 372 (629)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHhCCchHHHHHhHHHHHHH
Confidence 55421 1111 11111111 11222234443 3333333333 24454 2345666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC--cchh
Q 036703 213 YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP--RMEE 290 (365)
Q Consensus 213 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~--~~~~ 290 (365)
+|......+-++.|...|..+++........ ..+-.++|..| .+.++.+.-.++++..-..+ +.+. ..-.
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~~~dl~------a~~nlnlAi~Y-L~~~~~ed~y~~ld~i~p~n-t~s~ssq~l~ 444 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTESIDLQ------AFCNLNLAISY-LRIGDAEDLYKALDLIGPLN-TNSLSSQRLE 444 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhhHHHHH------HHHHHhHHHHH-HHhccHHHHHHHHHhcCCCC-CCcchHHHHH
Confidence 7777777899999999999999875543211 22445566666 46665554444444322211 1100 0011
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc-c-----hHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC--CCCCcc
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP-E-----NCYAWSKYTELEKSLDETERARAIFELAIAQPI--LDLPEF 362 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~-----~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~p~~ 362 (365)
..+++.+|-+.+..+++.+|+..+.+.++... . ..-....++.+....|+..+++++..-+++... .|.|-.
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 56778888888999999999999999998741 1 123445666777788999999999887776542 288888
Q ss_pred cc
Q 036703 363 LW 364 (365)
Q Consensus 363 ~~ 364 (365)
+|
T Consensus 525 Lw 526 (629)
T KOG2300|consen 525 LW 526 (629)
T ss_pred HH
Confidence 77
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0019 Score=49.80 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH
Q 036703 204 PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR 275 (365)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 275 (365)
|+....+...+.++....++..|..+++...+........ -....-++...| ..|+.+.+..++.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se-----d~r~lenLL~ay--d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE-----DSRSLENLLTAY--DEGDIEEIKKVLS 251 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH-----HHHHHHHHHHHh--ccCCHHHHHHHHc
Confidence 3444556666777777889999999999976652221110 023455555564 6788877766654
No 234
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0019 Score=49.44 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=104.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhC----CC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH------HH
Q 036703 24 NNYIRMEENLGNVAGARQIFERWMHWM----PD---HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS------AW 90 (365)
Q Consensus 24 ~~~~~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~ 90 (365)
..-+..+.-..++..|-..|.++-... .. ...+...++++ +.+++++|...+++++++..+... ..
T Consensus 38 ~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~ 116 (288)
T KOG1586|consen 38 ERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHH 116 (288)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhh
Confidence 333444444445555555555554322 11 22333334555 445899999999999988765443 34
Q ss_pred HHHHHHHHhh-cchHHHHHHHHHHHhhhhcCChh--hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----
Q 036703 91 INFADFEMKM-GEVDRARNVYECAVEIFLADDHD--EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR---- 163 (365)
Q Consensus 91 ~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---- 163 (365)
+.+|.+|... .++++|+..|+.+-+. ...+.. .....++..+.+-. ..+++.+|+++|++.....-++.
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~-yk~ees~ssANKC~lKvA~yaa---~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEY-YKGEESVSSANKCLLKVAQYAA---QLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHH-HcchhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 4788887764 8999999999999987 655411 11334555666666 88999999999999877544432
Q ss_pred -hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH
Q 036703 164 -AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD 208 (365)
Q Consensus 164 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~ 208 (365)
....+...+..+....+.- .+...+++..+.+|...+
T Consensus 193 s~KdyflkAgLChl~~~D~v--------~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEV--------NAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHhHhcccHH--------HHHHHHHHHHhcCCcccc
Confidence 1122222233333334322 366677777788897654
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0011 Score=51.08 Aligned_cols=125 Identities=10% Similarity=0.085 Sum_probs=62.7
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHH
Q 036703 218 ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKK 296 (365)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~ 296 (365)
....+++.|+.+|++++...-.+...++ -..++-..+..+ .+.+.+++|-..+.+-.......... ++ ...+..
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~m---a~el~gk~sr~l-Vrl~kf~Eaa~a~lKe~~~~~~~~~y-~~~~k~~va 195 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQM---AFELYGKCSRVL-VRLEKFTEAATAFLKEGVAADKCDAY-NSQCKAYVA 195 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHH---HHHHHHHhhhHh-hhhHHhhHHHHHHHHhhhHHHHHhhc-ccHHHHHHH
Confidence 3455666666666666655333221111 122333444444 55555666665555555542111110 22 233444
Q ss_pred HHHHHHHhCCCccHHHHHHHHHhh----CcchHHHHHHHHHHHhhccchhHHHHHH
Q 036703 297 YIEMELCLGNIDPCRKLYEKYLEW----SPENCYAWSKYTELEKSLDETERARAIF 348 (365)
Q Consensus 297 ~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 348 (365)
.+-++.-..++..|.++|+...+. .|++.....++...+- .||.+++.++.
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 444455556777777777766554 3445556666555553 46666655554
No 236
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.06 E-value=0.0023 Score=50.20 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=84.2
Q ss_pred hcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhh
Q 036703 32 NLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP------YNLSAWINFADFEMKM 100 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~ 100 (365)
...++++|+..|++.+++.|+ ..+....+.+..+.|++++....|.+++..-. .+......+.++-.-.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345789999999999999988 34566778888999999998888887765211 1333344444444445
Q ss_pred cchHHHHHHHHHHHhhhhcCChhhHHHHHH----HHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 101 GEVDRARNVYECAVEIFLADDHDEAEQLFV----AFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 101 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
.+.+--...|+..+.. ..+ .....+|+ .++.++. ..+++.+-.+++++....+..
T Consensus 119 ~~m~LLQ~FYeTTL~A-Lkd--AKNeRLWFKTNtKLgkl~f---d~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDA-LKD--AKNERLWFKTNTKLGKLYF---DRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred hhhHHHHHHHHHHHHH-HHh--hhcceeeeeccchHhhhhe---eHHHHHHHHHHHHHHHHHhcc
Confidence 5666666677776665 322 12256664 6888888 888888887777776655443
No 237
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.04 E-value=5.3e-05 Score=61.06 Aligned_cols=108 Identities=11% Similarity=0.056 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG 101 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 101 (365)
...-|.-|+++|++++|+.+|.+++..+|. +......+..|.+...+..|..-...++.++.....+|.+.+..-...|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999995 7788889999999999999999999999999888899999999999999
Q ss_pred chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703 102 EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135 (365)
Q Consensus 102 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
...+|.+-+++++.. .|.+ .++-..++.+
T Consensus 180 ~~~EAKkD~E~vL~L-EP~~----~ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL-EPKN----IELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHhh-Cccc----HHHHHHHHHh
Confidence 999999999999999 8887 5555555443
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00064 Score=54.07 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHH---HHHHHHHhccHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLS---YIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~~~~~~~~~~~~~A~~~~~~ 78 (365)
+.+|...|..++...|++..+-..|++++...|+.+.|..++...-..... ..|.. .+.+..+..+..+. ..+++
T Consensus 150 ~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~~~-~~l~~ 227 (304)
T COG3118 150 FGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATPEI-QDLQR 227 (304)
T ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCCCH-HHHHH
Confidence 456777788888888888888888888888888887777776654221111 22222 22333222222211 23455
Q ss_pred HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
.+..+|++..+-+.++..+...|+.+.|.+.+-..++.
T Consensus 228 ~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 228 RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66778888888888888888888888888877777766
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.01 E-value=0.0064 Score=51.12 Aligned_cols=181 Identities=12% Similarity=0.030 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCcchHHHHHHHHHHHh---hcchHHHHHHHHHHHhhhhcCChhhH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQC----HPYNLSAWINFADFEMK---MGEVDRARNVYECAVEIFLADDHDEA 125 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~ 125 (365)
+.+...+.-.|....+++..+.+.+.+-.. .++.+.+-..+|..+.+ .|+.++|++++..++....+.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~---- 216 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD---- 216 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC----
Confidence 455666677788888999999988877665 55677888889999998 8999999999999655514444
Q ss_pred HHHHHHHHHHHHh------ccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh----hhHHHHHHHHHH
Q 036703 126 EQLFVAFAKFEEM------GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG----IEDAIAGKMRLQ 195 (365)
Q Consensus 126 ~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~ 195 (365)
++++...|.+|.. .......++|+..|.++....|+.- .-..++.+....|.... +..+.+.-+...
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y---~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY---SGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc---chHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 8888888888761 1123468899999999999886531 22223333334443221 111111111111
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 196 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
-++.....-.+....-.++.+..-.|++++|...++++++..|+.
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 111111222344555667777788999999999999999998874
No 240
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.00 E-value=1.4e-05 Score=63.23 Aligned_cols=91 Identities=14% Similarity=0.287 Sum_probs=74.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCcc
Q 036703 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKF-KLRYNEVQRARHIFERLVQCHPYN 86 (365)
Q Consensus 9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~~~p~~ 86 (365)
|.++....|+++..|..++..-...|-+.+-..+|..++..+|. .++|...+.+ +...++++.++.+|.+++..+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 55666778888899999988888888888888899999998888 7888876655 446788899999999999999989
Q ss_pred hHHHHHHHHHHHh
Q 036703 87 LSAWINFADFEMK 99 (365)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (365)
|.+|..+-.+...
T Consensus 176 p~iw~eyfr~El~ 188 (435)
T COG5191 176 PRIWIEYFRMELM 188 (435)
T ss_pred chHHHHHHHHHHH
Confidence 9998888776553
No 241
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00019 Score=54.86 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=71.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703 27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR 105 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 105 (365)
|..+.....+..|+..|.+++..+|. ...|..-+.++.+.++++.+..--.+++++.|+.+.....+|.+......+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 34444556677788888888888888 57788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhh
Q 036703 106 ARNVYECAVEI 116 (365)
Q Consensus 106 A~~~~~~a~~~ 116 (365)
|+..+.++...
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 88888888544
No 242
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.0089 Score=51.10 Aligned_cols=276 Identities=12% Similarity=0.106 Sum_probs=182.4
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH-hhhhcCC----hhhHHHHHHHHHH
Q 036703 60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV-EIFLADD----HDEAEQLFVAFAK 134 (365)
Q Consensus 60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~----~~~~~~~~~~~~~ 134 (365)
..++....+...+..-.+.++....+++.....-++++.-.|++.+|.+.+...- .. .|.- .-.+.-.|.++|.
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcce
Confidence 3455555666666666666777777888888899999999999999999886642 22 2221 0012446788999
Q ss_pred HHHhccccchhHHHHHHHHHHhcc-C--------C-------CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHH
Q 036703 135 FEEMGCNCKETDRARCIYKFALDR-I--------P-------KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198 (365)
Q Consensus 135 ~~~~~~~~~~~~~A~~~~~~~l~~-~--------p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 198 (365)
++. +.|.+.-+..+|.++++. + | .+.+..+.+..+..+...|.+. .|.++|.+
T Consensus 292 Ih~---~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl--------~AfqCf~~ 360 (696)
T KOG2471|consen 292 IHY---QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL--------LAFQCFQK 360 (696)
T ss_pred Eee---ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcH--------HHHHHHHH
Confidence 999 999999999999999851 1 1 1234566677777777888876 58999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHh---C----------------------------------------------CHHHHHHH
Q 036703 199 GVRKNPMNYDTWFDYIRLEERV---G----------------------------------------------NQERVREV 229 (365)
Q Consensus 199 ~l~~~p~~~~~~~~~~~~~~~~---~----------------------------------------------~~~~A~~~ 229 (365)
+...+..++.+|+.++++.+.. | ..+-|+-+
T Consensus 361 av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vC 440 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVC 440 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHH
Confidence 9999999999999999876421 0 02234555
Q ss_pred HHHHHhcCCCchh--------------------------hhH------------------HHH----hHHHHHHHHHHHh
Q 036703 230 YERAIANVPPAEE--------------------------KRY------------------WQR----YIYLWINYALYKE 261 (365)
Q Consensus 230 ~~~~~~~~p~~~~--------------------------~~~------------------~~~----~~~~~~~~~~~~~ 261 (365)
++.++-..|.... ..- +.. ...++-..+-. +
T Consensus 441 Lrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV-~ 519 (696)
T KOG2471|consen 441 LRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYV-E 519 (696)
T ss_pred HHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHH-H
Confidence 5555533321100 000 000 01122222333 4
Q ss_pred hccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHH-----HHhCCCccHHHHHHHHHh----------------
Q 036703 262 VDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEME-----LCLGNIDPCRKLYEKYLE---------------- 319 (365)
Q Consensus 262 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~---------------- 319 (365)
+..|+.-.|+..-++.+.. |+ ..++..+|.+| +-+.+..+|+..+.--+-
T Consensus 520 L~Lgd~i~AL~~a~kLLq~--------~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~ 591 (696)
T KOG2471|consen 520 LELGDPIKALSAATKLLQL--------ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQ 591 (696)
T ss_pred HHhcChhhHHHHHHHHHhh--------hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhh
Confidence 6889999999999999887 55 56666666665 346667777666554110
Q ss_pred -------hC------cc----h-----HHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 320 -------WS------PE----N-----CYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 320 -------~~------p~----~-----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
++ |+ + ..+..+++..+..+|+.++|+.++..+..+.+
T Consensus 592 ~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 592 WWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred hhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 01 11 1 23677888999999999999999988887766
No 243
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00016 Score=55.37 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=46.9
Q ss_pred HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
....+..|+..|.+++..+|..+..|.+-+.++.+.++++.+..--.++++. .|+. ....+.++.+.. ....
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-~~N~----vk~h~flg~~~l---~s~~ 93 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-DPNL----VKAHYFLGQWLL---QSKG 93 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-ChHH----HHHHHHHHHHHH---hhcc
Confidence 3344555555555555555555555555555555555555555555555555 4444 555555555555 5555
Q ss_pred hHHHHHHHHHH
Q 036703 145 TDRARCIYKFA 155 (365)
Q Consensus 145 ~~~A~~~~~~~ 155 (365)
+++|+.++.++
T Consensus 94 ~~eaI~~Lqra 104 (284)
T KOG4642|consen 94 YDEAIKVLQRA 104 (284)
T ss_pred ccHHHHHHHHH
Confidence 55555555554
No 244
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.011 Score=50.49 Aligned_cols=134 Identities=8% Similarity=-0.042 Sum_probs=80.3
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHh-HHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHH
Q 036703 218 ERVGNQERVREVYERAIANVPPAEEKRYWQRY-IYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKK 296 (365)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 296 (365)
.-.|++.+|.+....+..-+...+...+.+.. ..+....|.+. ...+-++.|...|..|.+...... -..-.-.+
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys-~sv~~~enAe~hf~~a~k~t~~~d---l~a~~nln 409 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS-HSVNCYENAEFHFIEATKLTESID---LQAFCNLN 409 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh-hhcchHHHHHHHHHHHHHhhhHHH---HHHHHHHh
Confidence 34566666666665555443222221111111 12333344443 577889999999999998742100 00223445
Q ss_pred HHHHHHHhCCCccHHHHHHHHHhhCcc-------hHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 297 YIEMELCLGNIDPCRKLYEKYLEWSPE-------NCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 297 ~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
++..|.+.|+-+.-.++++..-..+.. -..+.+.+|.+....|++.+|+....+.++..
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 677788877766666665554322211 13467778888899999999999999998776
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.91 E-value=0.0023 Score=54.79 Aligned_cols=145 Identities=13% Similarity=0.098 Sum_probs=84.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhc
Q 036703 60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG 139 (365)
Q Consensus 60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (365)
..-..+..+.+.-++.-.+|++++|+.+.+|+.++.- ......+|.++|+++++. . +..+.......
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkA-g--------E~~lg~s~~~~-- 241 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKA-G--------EASLGKSQFLQ-- 241 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHH-H--------HHhhchhhhhh--
Confidence 3444566677888888888999999888888877652 234577888888888887 2 22221111111
Q ss_pred cccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 036703 140 CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM--NYDTWFDYIRLE 217 (365)
Q Consensus 140 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~--~~~~~~~~~~~~ 217 (365)
..|..-+. +..-..+....+-..++....+.|... +|++.++..++.+|. +..+...++..+
T Consensus 242 -~~g~~~e~-------~~~Rdt~~~~y~KrRLAmCarklGr~~--------EAIk~~rdLlke~p~~~~l~IrenLie~L 305 (539)
T PF04184_consen 242 -HHGHFWEA-------WHRRDTNVLVYAKRRLAMCARKLGRLR--------EAIKMFRDLLKEFPNLDNLNIRENLIEAL 305 (539)
T ss_pred -cccchhhh-------hhccccchhhhhHHHHHHHHHHhCChH--------HHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence 11111111 100111111233344555556666543 577777777776654 345667777777
Q ss_pred HHhCCHHHHHHHHHHH
Q 036703 218 ERVGNQERVREVYERA 233 (365)
Q Consensus 218 ~~~~~~~~A~~~~~~~ 233 (365)
...+.+.++..++.+-
T Consensus 306 Lelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 306 LELQAYADVQALLAKY 321 (539)
T ss_pred HhcCCHHHHHHHHHHh
Confidence 7777777777777764
No 246
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.89 E-value=0.00067 Score=47.87 Aligned_cols=117 Identities=23% Similarity=0.450 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCC---CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703 191 KMRLQYEDGVRKNP---MNYDTWFDYIRLEERV----GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD 263 (365)
Q Consensus 191 ~a~~~~~~~l~~~p---~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
..+..|+..+.... +..+.|..++...... +.......++++++....++..-+--.+++.+|+.++.+. .
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~--~ 80 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS--S 80 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--S
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--c
Confidence 35567777777544 5568999998876543 4667778899999988766544333446788888888652 1
Q ss_pred cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHH
Q 036703 264 AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL 318 (365)
Q Consensus 264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 318 (365)
.+..+|+.+....... .-+.+|..+|.++...|++++|.++|++++
T Consensus 81 -----~~~~if~~l~~~~IG~----~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGT----KLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTST----TBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccH----HHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7777777776653211 126677888888888888888888887764
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.003 Score=50.39 Aligned_cols=134 Identities=9% Similarity=0.019 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHH
Q 036703 89 AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLY 168 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 168 (365)
.-+.-+.-....|++.+|...|..++.. .|.+ ..+...++.++. ..|+.+.|..++...-....... ....
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~-~~~~----~~~~~~la~~~l---~~g~~e~A~~iL~~lP~~~~~~~-~~~l 206 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQA-APEN----SEAKLLLAECLL---AAGDVEAAQAILAALPLQAQDKA-AHGL 206 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHh-Cccc----chHHHHHHHHHH---HcCChHHHHHHHHhCcccchhhH-HHHH
Confidence 3344455566788999999999999999 8887 888999999999 99999999888776433222221 1111
Q ss_pred HHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
..-+.+..+.....+ ...+++.+..+|++.++-+.++..+...|+.+.|.+.+-..++.+-..
T Consensus 207 ~a~i~ll~qaa~~~~---------~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 207 QAQIELLEQAAATPE---------IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHHHHHHhcCCC---------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 123444444433321 245677888999999999999999999999999999999888876543
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.86 E-value=0.0005 Score=60.62 Aligned_cols=115 Identities=15% Similarity=0.203 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIF 76 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~ 76 (365)
.+.|.++++...+..|++.-....-|+++...|++++|++.|++++....+ .-.+..++-++..+.++++|...|
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 467899999999999998888888999999999999999999999854433 235667788888899999999999
Q ss_pred HHHHHhCCcchHHH-HHHHHHHHhhcch-------HHHHHHHHHHHhh
Q 036703 77 ERLVQCHPYNLSAW-INFADFEMKMGEV-------DRARNVYECAVEI 116 (365)
Q Consensus 77 ~~~l~~~p~~~~~~-~~~~~~~~~~~~~-------~~A~~~~~~a~~~ 116 (365)
.++.+.+..+...+ +..|-++...|+. ++|.++|.++-..
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999888665444 3445667778888 7777777776554
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.85 E-value=2.8e-05 Score=40.71 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN 324 (365)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 324 (365)
+.|..+|.++...|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666777777777777777777777777653
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.83 E-value=0.012 Score=49.48 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC---chhHHHHHHHHHHHHH---cCCchhhhHHHHHHHHHHHHH
Q 036703 125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK---GRAEDLYRKFLAFEKQ---YGDREGIEDAIAGKMRLQYED 198 (365)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~ 198 (365)
++.+...+...|. ...+++.-+++.+..-.. |. .....+-..|+-...+ .|+. ++|+.++..
T Consensus 140 s~div~~lllSyR---diqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdr--------e~Al~il~~ 207 (374)
T PF13281_consen 140 SPDIVINLLLSYR---DIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDR--------EKALQILLP 207 (374)
T ss_pred ChhHHHHHHHHhh---hhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCH--------HHHHHHHHH
Confidence 3667777777888 999999999999876554 21 1123455555555545 4553 479999988
Q ss_pred HH-HcCCCCHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC-h
Q 036703 199 GV-RKNPMNYDTWFDYIRLEER---------VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-L 267 (365)
Q Consensus 199 ~l-~~~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 267 (365)
++ ...+.+++++...|.+|.+ ....++|+..|.++....|+.. .-++++.++. ..|. .
T Consensus 208 ~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y----------~GIN~AtLL~-~~g~~~ 276 (374)
T PF13281_consen 208 VLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY----------SGINAATLLM-LAGHDF 276 (374)
T ss_pred HHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc----------chHHHHHHHH-HcCCcc
Confidence 55 4666778999999988743 2357889999999999997642 3344444442 3333 2
Q ss_pred hHHHHHHHHHHhcc---ccCCCcchhHHHH--HHHHHHHHHhCCCccHHHHHHHHHhhCcchH
Q 036703 268 ERTRDVYRTLFIFY---FSFSPRMEERRIF--KKYIEMELCLGNIDPCRKLYEKYLEWSPENC 325 (365)
Q Consensus 268 ~~a~~~~~~a~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 325 (365)
....++-+-++... ......-+..+.| -.++++..-.|++++|...+++++...|...
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 22212211111110 0000000113333 3456666778999999999999998876543
No 251
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.031 Score=52.38 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703 207 YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286 (365)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 286 (365)
.+-+-.++..|...|-+++.+.+++.++.....+-. ++..++.+| ..-.+++-++.++-....- +.++
T Consensus 1279 adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg---------mfTELaiLY--skykp~km~EHl~LFwsRv-NipK 1346 (1666)
T KOG0985|consen 1279 ADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG---------MFTELAILY--SKYKPEKMMEHLKLFWSRV-NIPK 1346 (1666)
T ss_pred hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH---------HHHHHHHHH--HhcCHHHHHHHHHHHHHhc-chHH
Confidence 345667888889999999999999998877555432 455555554 3344555555444332210 0000
Q ss_pred cc---hhHHHHHHHHHHHHHhCCCccH
Q 036703 287 RM---EERRIFKKYIEMELCLGNIDPC 310 (365)
Q Consensus 287 ~~---~~~~~~~~~~~~~~~~~~~~~A 310 (365)
+. ....+|..+.-+|.+-..++.|
T Consensus 1347 viRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1347 VIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 00 1134566666666665555554
No 252
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.81 E-value=6.6e-05 Score=39.23 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD 52 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 52 (365)
.+|..+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555565555555555553
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.80 E-value=4e-05 Score=40.08 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN 324 (365)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 324 (365)
..|..+|.++...|++++|...|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777777753
No 254
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.79 E-value=5.6e-05 Score=60.01 Aligned_cols=90 Identities=16% Similarity=0.429 Sum_probs=78.0
Q ss_pred HHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-hhcchHHHHHHHHHHHhhhhcC
Q 036703 43 FERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM-KMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 43 ~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
|.|+....|. +..|..++....+.|-+.....+|.++++.+|.++++|..-+.... ..++++.++..|.++++. +|.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~-N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM-NSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc-CCC
Confidence 3444444555 8999999999999999999999999999999999999998666644 478999999999999999 998
Q ss_pred ChhhHHHHHHHHHHHHH
Q 036703 121 DHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (365)
+ +.+|..+..++.
T Consensus 175 ~----p~iw~eyfr~El 187 (435)
T COG5191 175 S----PRIWIEYFRMEL 187 (435)
T ss_pred C----chHHHHHHHHHH
Confidence 8 999999888776
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.77 E-value=0.0014 Score=48.10 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=69.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhCCC-----------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703 27 IRMEENLGNVAGARQIFERWMHWMPD-----------------------HEGWLSYIKFKLRYNEVQRARHIFERLVQCH 83 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~~p~-----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 83 (365)
+......|+.+.+...+++++.+... ..+...++..+...|+++.|...+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 44445667888888888888875321 1233445566678899999999999999999
Q ss_pred CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
|.+..+|..+..++...|+...|++.|++..+.
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998776
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.74 E-value=9.3e-05 Score=38.64 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhCC
Q 036703 22 LWNNYIRMEENLGNVAGARQIFERWMHWMP 51 (365)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 51 (365)
+|..+|.++...|++++|++.|+++++++|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 444555555555555555555555555544
No 257
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.74 E-value=6.3e-05 Score=63.50 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
|+.|+.+|.++++++|+++..+...+..+.+.+++..|+.-+.++++.+|. ...+..-|......+.+.+|...|++..
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhh
Confidence 556666666666666666666666666666666666666666666666666 5566666666666666666666666666
Q ss_pred HhCCcchHHHHHHHHH
Q 036703 81 QCHPYNLSAWINFADF 96 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~ 96 (365)
...|+++.+...+..+
T Consensus 100 ~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 100 KLAPNDPDATRKIDEC 115 (476)
T ss_pred hcCcCcHHHHHHHHHH
Confidence 6666666555544443
No 258
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.067 Score=54.75 Aligned_cols=284 Identities=12% Similarity=0.144 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH---hhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWM---HWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN 92 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 92 (365)
+-|......-....+..+-+-.+.|++ ..+|+ .+.|...|++....|.++.|...+-+|.+..+ +.+...
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E 1707 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLE 1707 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHH
Confidence 445554444333334444444445444 23544 67999999999999999999999999988875 889999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCC------------hhhHHHHHHHHHHHHHhccccchh--HHHHHHHHHHhcc
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADD------------HDEAEQLFVAFAKFEEMGCNCKET--DRARCIYKFALDR 158 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~l~~ 158 (365)
.|+++...|+...|+.++++.++.-.|+. ......+.+.++.+.. ..|++ +..++.|+.+.+.
T Consensus 1708 ~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~---es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1708 RAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLE---ESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHH---HhcchhHHHHHHHHHHHHHH
Confidence 99999999999999999999996524441 0011233445555555 55554 4688889999998
Q ss_pred CCCchhHHHHHH--HHHHHHHc--CCch---hhhHHHHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHH---h
Q 036703 159 IPKGRAEDLYRK--FLAFEKQY--GDRE---GIEDAIAGKMRLQYEDGVRKNP--------MNYDTWFDYIRLEER---V 220 (365)
Q Consensus 159 ~p~~~~~~~~~~--~~~~~~~~--~~~~---~~~~~~~~~a~~~~~~~l~~~p--------~~~~~~~~~~~~~~~---~ 220 (365)
.|......++.+ +..++... +..+ .... .+. ++-.|.+++..+- .-..+|+.+|..... .
T Consensus 1785 l~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~-~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~ 1862 (2382)
T KOG0890|consen 1785 LPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLS-LLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKA 1862 (2382)
T ss_pred cccccCceeeHHHHHHHHhhhhhcccccccccHHH-HHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccC
Confidence 885332222222 22222211 1111 1111 112 4555567766443 334567776554432 1
Q ss_pred -------CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh----ccccCCCcch
Q 036703 221 -------GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI----FYFSFSPRME 289 (365)
Q Consensus 221 -------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~----~~~~~~~~~~ 289 (365)
++....-...++++...|.-. .+..|.++...-....++.-.++.+.+. .. |
T Consensus 1863 ~r~ei~s~~~~~in~~i~~~~~~lp~Y~----------f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~Y-------P 1925 (2382)
T KOG0890|consen 1863 PRGEIVSKNLKLINSLIEEALEHLPTYQ----------FYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAY-------P 1925 (2382)
T ss_pred ChhhhhhhhHHHHHHHHHHHHHhCcchH----------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-------c
Confidence 233344555666777777742 4445555543233444444444444433 24 8
Q ss_pred hHHHHHHHHHHHH-HhCCCccHHHHHHHHHhhCcchHHHH
Q 036703 290 ERRIFKKYIEMEL-CLGNIDPCRKLYEKYLEWSPENCYAW 328 (365)
Q Consensus 290 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~ 328 (365)
...+|...+.+-. ...+.+.+.++++++....|+...+.
T Consensus 1926 qq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~~~~l~ 1965 (2382)
T KOG0890|consen 1926 QQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPDYKKLL 1965 (2382)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 7888887776543 23456788889998888877655444
No 259
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00099 Score=51.36 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703 208 DTWFDYIRLEERVGNQERVREVYERAIAN--------VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI 279 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 279 (365)
.+...-|.-+...|++.+|...|..|+.. .|.+++ |..+..
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e----------W~eLdk--------------------- 227 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE----------WLELDK--------------------- 227 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH----------HHHHHH---------------------
Confidence 45666677778899999999999888753 333331 111000
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 280 FYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
....++.+|.+++...|++-++.+.....+..+|.|+.+++..+......=+..+|..-|.+++.++|
T Consensus 228 ---------~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 228 ---------MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred ---------hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 00113445555555555555555555555555555555555555555555555555555555555554
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.68 E-value=0.0046 Score=54.70 Aligned_cols=167 Identities=17% Similarity=0.084 Sum_probs=107.1
Q ss_pred ccchhHHHHHHHHHHhccCCCch-hH-HHHHHHHHHH-HHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 036703 141 NCKETDRARCIYKFALDRIPKGR-AE-DLYRKFLAFE-KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLE 217 (365)
Q Consensus 141 ~~~~~~~A~~~~~~~l~~~p~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~ 217 (365)
-.|+-+.+++.+.++.+...-.. .. -+...|-.+. .-.+. +. .+.....|..+++...+..|++.-..+..|.++
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~-~~-~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGI-DG-EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE 277 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCC-cc-cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 56899999999999887322111 11 1111111111 11121 11 222355799999999999999988888999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHH
Q 036703 218 ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKY 297 (365)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 297 (365)
...|+.++|+..|++++.....-+.. .. ..+..++-.+ ....++++|...|.+..+... |...-..+..
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql---~~--l~~~El~w~~-~~~~~w~~A~~~f~~L~~~s~-----WSka~Y~Y~~ 346 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQL---HH--LCYFELAWCH-MFQHDWEEAAEYFLRLLKESK-----WSKAFYAYLA 346 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhH---HH--HHHHHHHHHH-HHHchHHHHHHHHHHHHhccc-----cHHHHHHHHH
Confidence 99999999999999988543322211 11 1233344443 477899999999999998642 1223344445
Q ss_pred HHHHHHhCCC-------ccHHHHHHHHHhh
Q 036703 298 IEMELCLGNI-------DPCRKLYEKYLEW 320 (365)
Q Consensus 298 ~~~~~~~~~~-------~~A~~~~~~al~~ 320 (365)
|.++...|+. ++|.+.|.++-..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 6667788888 7788888777544
No 261
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.0039 Score=45.66 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703 293 IFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA 353 (365)
Q Consensus 293 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 353 (365)
....++..+...|++++|...+++++..+|-+..+|..+..++...|+...|...|+++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556777778899999999999999999999999999999999999999999999988754
No 262
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.58 E-value=7.5e-05 Score=60.17 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=43.1
Q ss_pred hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHH
Q 036703 32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVY 110 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 110 (365)
..|.++.|++.|.+++.++|. ..++...+.++.+.+....|+.-+..++.++|++..-+...+.....+|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 444555555555555555554 3344444445555555555555555555555555444444444444455555555555
Q ss_pred HHHHhh
Q 036703 111 ECAVEI 116 (365)
Q Consensus 111 ~~a~~~ 116 (365)
..+.+.
T Consensus 206 ~~a~kl 211 (377)
T KOG1308|consen 206 ALACKL 211 (377)
T ss_pred HHHHhc
Confidence 555544
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.56 E-value=0.041 Score=47.09 Aligned_cols=124 Identities=10% Similarity=0.119 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703 164 AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM----NYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239 (365)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 239 (365)
....|..++.+..+.|... .|...+.++...++. .+.+.+..+.+....|+..+|+..++..+.....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~--------~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQ--------LALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHCCCcH--------HHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 3567777777777777655 466666666654321 3566667777777777777777777777662111
Q ss_pred ch-------------------------hhhHHHHhHHHHHHHHHHHhhcc------CChhHHHHHHHHHHhccccCCCcc
Q 036703 240 AE-------------------------EKRYWQRYIYLWINYALYKEVDA------GDLERTRDVYRTLFIFYFSFSPRM 288 (365)
Q Consensus 240 ~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~a~~~~~~~~~~~ 288 (365)
.. ....-.....++..+|.+.. .. +..+.+...|..+++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~~~~~~~~~~~~~~~~~~~a~~~~------- 288 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD-ELYSKLSSESSDEILKYYKEATKLD------- 288 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHHHhC-------
Confidence 00 00011122456777777763 55 88999999999999998
Q ss_pred hh-HHHHHHHHHHHHH
Q 036703 289 EE-RRIFKKYIEMELC 303 (365)
Q Consensus 289 ~~-~~~~~~~~~~~~~ 303 (365)
|. ...|..++.++.+
T Consensus 289 ~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 289 PSWEKAWHSWALFNDK 304 (352)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 44 5567777776643
No 264
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.13 Score=52.80 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc-cc
Q 036703 205 MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY-FS 283 (365)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~ 283 (365)
.-.+.|+..+++.+..|.++.|...+-+|.+..++. +.+..|.+. ...|+...|+.+++..+..+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~-----------i~~E~AK~l-W~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRLPE-----------IVLERAKLL-WQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccch-----------HHHHHHHHH-HhhccHHHHHHHHHHHHHhhccc
Confidence 346899999999999999999999999998877554 778889997 59999999999999999763 22
Q ss_pred CCCcc---hh---H----HHHHHHHHHHHHhCCC--ccHHHHHHHHHhhCcchHHHHHHHH
Q 036703 284 FSPRM---EE---R----RIFKKYIEMELCLGNI--DPCRKLYEKYLEWSPENCYAWSKYT 332 (365)
Q Consensus 284 ~~~~~---~~---~----~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~ 332 (365)
.-... |. . .....++......|++ ++-.+.|..+.+..|...+-++.+|
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 11100 11 1 1222333333455554 3568889999999986555444444
No 265
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.56 E-value=0.0026 Score=44.91 Aligned_cols=115 Identities=14% Similarity=0.269 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCC-CchhhhHHHHhHHHHHHHHHHHhhc---cCChhHHHHHHHHHHhccccCCCcchh---HHHHHHH
Q 036703 225 RVREVYERAIANVP-PAEEKRYWQRYIYLWINYALYKEVD---AGDLERTRDVYRTLFIFYFSFSPRMEE---RRIFKKY 297 (365)
Q Consensus 225 ~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 297 (365)
..+..|+..+.... .+.. +..|..+..+.+.. .+....-..+++++++...+....-.+ ..+|..+
T Consensus 3 ~~r~~~e~~i~~~~~~dDP-------L~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y 75 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDP-------LDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKY 75 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-C-------HHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC-------hHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH
Confidence 45677888877755 2221 56888888886422 245566778999998875433211111 4455555
Q ss_pred HHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 298 IEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 298 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
+. ..+.+..+|..+... .-+.+.+|..+|.++...|++++|.++|++++
T Consensus 76 a~------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 76 AD------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HT------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HH------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 54 344999999988875 56688999999999999999999999999875
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.034 Score=45.36 Aligned_cols=163 Identities=8% Similarity=-0.006 Sum_probs=115.5
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc-CCCchh-HHHHHHHH
Q 036703 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR-IPKGRA-EDLYRKFL 172 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~-~~~~~~~~ 172 (365)
-+....|++.+|-...++.++. .|.+ .-.|.---..+. ..|+.+.-+..+++.+.. +|+-+. ..+.-.|+
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d-~PtD----lla~kfsh~a~f---y~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDD-YPTD----LLAVKFSHDAHF---YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred HHhhccccccHHHHHHHHHHHh-Cchh----hhhhhhhhhHHH---hccchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 3445678999999999999999 9987 666666666677 789999999999998876 554331 22223334
Q ss_pred HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHH
Q 036703 173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYL 252 (365)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 252 (365)
-.....|-++ .|.+.-+++++++|.+..+....+.++.-.|+..++.+...+--..=..+. -....-
T Consensus 183 FgL~E~g~y~--------dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~-----mlasHN 249 (491)
T KOG2610|consen 183 FGLEECGIYD--------DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW-----MLASHN 249 (491)
T ss_pred hhHHHhccch--------hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh-----HHHhhh
Confidence 3444555544 688889999999999999999999999999999999998877433211111 111223
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703 253 WINYALYKEVDAGDLERTRDVYRTLFI 279 (365)
Q Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~~~a~~ 279 (365)
|-..+.++ ...+.++.|+++|.+-+-
T Consensus 250 yWH~Al~~-iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 250 YWHTALFH-IEGAEYEKALEIYDREIW 275 (491)
T ss_pred hHHHHHhh-hcccchhHHHHHHHHHHH
Confidence 33455555 577899999999987653
No 267
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.53 E-value=0.016 Score=45.74 Aligned_cols=131 Identities=8% Similarity=0.115 Sum_probs=80.8
Q ss_pred CCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCCch---hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703 204 PMNYDTW----FDYIRLEERVGNQERVREVYERAIANVPPAE---EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT 276 (365)
Q Consensus 204 p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 276 (365)
..+..+| ..+|.++...|++.+-.+++.+.-..+..+. +.+--..++.++..-.+.| ..+++-.+-..+|++
T Consensus 138 AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY-T~qKnNKkLK~lYeq 216 (440)
T KOG1464|consen 138 AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY-TEQKNNKKLKALYEQ 216 (440)
T ss_pred hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh-hhhcccHHHHHHHHH
Confidence 3455666 3578888888888888888777665544322 1111112344544445565 367777888889999
Q ss_pred HHhccccCCCcchhHH----HHHHHHHHHHHhCCCccHHHHHHHHHhhCcc-------hHHHHHHHHHHHhhcc
Q 036703 277 LFIFYFSFSPRMEERR----IFKKYIEMELCLGNIDPCRKLYEKYLEWSPE-------NCYAWSKYTELEKSLD 339 (365)
Q Consensus 277 a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~g 339 (365)
++...... |.|. +-.+-|.+..+.|.+++|-.-|-.|.+.... ...-+..++++++..|
T Consensus 217 alhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 217 ALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 98875333 4433 3333455677889999998888888765322 1224455666666654
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.022 Score=42.72 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHH
Q 036703 55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVA 131 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (365)
.-+.++..+...|++++|...++.++....+. ..+-.+++.+....|.+++|++.++..... . -....-..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~-----w~~~~~el 164 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-S-----WAAIVAEL 164 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-c-----HHHHHHHH
Confidence 44566777888999999999999998665532 445678899999999999999988765443 1 12445566
Q ss_pred HHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 132 FAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.|.++. ..|+-++|+..|++++...++.
T Consensus 165 rGDill---~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 165 RGDILL---AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hhhHHH---HcCchHHHHHHHHHHHHccCCh
Confidence 789999 9999999999999999987554
No 269
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.095 Score=49.38 Aligned_cols=160 Identities=15% Similarity=0.081 Sum_probs=94.3
Q ss_pred ccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 036703 141 NCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV 220 (365)
Q Consensus 141 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 220 (365)
.-+..++|.+.-+++-+ ..+|..++....+.|.. ..|++.|-+ .+++..+...++...+.
T Consensus 1087 ~i~~ldRA~efAe~~n~-------p~vWsqlakAQL~~~~v--------~dAieSyik-----adDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNE-------PAVWSQLAKAQLQGGLV--------KDAIESYIK-----ADDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HhhhHHHHHHHHHhhCC-------hHHHHHHHHHHHhcCch--------HHHHHHHHh-----cCCcHHHHHHHHHHHhc
Confidence 44566667666665421 46888888877776653 346666544 35667788888888899
Q ss_pred CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHH
Q 036703 221 GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM 300 (365)
Q Consensus 221 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 300 (365)
|.|++-..++.-+.+........ ..+.+.|+. .++..+-.++ +. . |+..-....|+-
T Consensus 1147 ~~~edLv~yL~MaRkk~~E~~id------~eLi~AyAk-----t~rl~elE~f----i~-g-------pN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKKVREPYID------SELIFAYAK-----TNRLTELEEF----IA-G-------PNVANIQQVGDR 1203 (1666)
T ss_pred CcHHHHHHHHHHHHHhhcCccch------HHHHHHHHH-----hchHHHHHHH----hc-C-------CCchhHHHHhHH
Confidence 99999998888887764332100 123333432 2333322221 11 1 443344566676
Q ss_pred HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHH
Q 036703 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351 (365)
Q Consensus 301 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 351 (365)
+...|.++.|+-+|.. +.-|..++..+...|++.-|...-++|
T Consensus 1204 cf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777777766643 334555666666666666665555544
No 270
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.49 E-value=0.085 Score=48.81 Aligned_cols=303 Identities=12% Similarity=0.114 Sum_probs=171.1
Q ss_pred hhHHHHHHHHHHhCCC----chHHHHHHHHHHH-hcCChhHHHHHHHHHHhhCC--C-h----HHHHHHHHHHHHhccHH
Q 036703 3 DHGRNAWDRVVTLSPR----VDQLWNNYIRMEE-NLGNVAGARQIFERWMHWMP--D-H----EGWLSYIKFKLRYNEVQ 70 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p--~-~----~~~~~~~~~~~~~~~~~ 70 (365)
..|+..++-+++..+- ...+...+|.++. ...+++.|+..+++++.+.. + . ..-..++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 3567778877743221 1456888999888 67899999999999987663 3 1 22345577777777666
Q ss_pred HHHHHHHHHHHhCCcc-hHHH---HHHH--HHHHhhcchHHHHHHHHHHHhhhhc--CChhhHHHHHHHHHHHHHhcccc
Q 036703 71 RARHIFERLVQCHPYN-LSAW---INFA--DFEMKMGEVDRARNVYECAVEIFLA--DDHDEAEQLFVAFAKFEEMGCNC 142 (365)
Q Consensus 71 ~A~~~~~~~l~~~p~~-~~~~---~~~~--~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 142 (365)
|...+++.++...+. ...| +.+. .+....+++..|.+.++.+... .. .++.....+...-+.++. ..
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~-a~~~~d~~~~v~~~l~~~~l~l---~~ 192 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQL-ANQRGDPAVFVLASLSEALLHL---RR 192 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHh---cC
Confidence 999999998865531 1222 2222 2222337999999999999887 42 321111222223344555 67
Q ss_pred chhHHHHHHHHHHhccC------CC--chhHHHHHHHHHHH--HHcCCchhhhHHHHHHHHHHHHHHHH---cCC---C-
Q 036703 143 KETDRARCIYKFALDRI------PK--GRAEDLYRKFLAFE--KQYGDREGIEDAIAGKMRLQYEDGVR---KNP---M- 205 (365)
Q Consensus 143 ~~~~~A~~~~~~~l~~~------p~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~---~~p---~- 205 (365)
+..+.+.+..++++... |. .+...+|....++. ...|+...+.. ....+++.++ ..| .
T Consensus 193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~-----~L~~lq~~~~~~~~~~~w~~~ 267 (608)
T PF10345_consen 193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQ-----KLKQLQQFLDEIKKSPSWPSW 267 (608)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHHHHHhhcCccCCCc
Confidence 77777888887764321 11 12344555554443 34555444332 2222333222 111 0
Q ss_pred --C-----------------H---------H----HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------ch-----
Q 036703 206 --N-----------------Y---------D----TWFDYIRLEERVGNQERVREVYERAIANVPP-------AE----- 241 (365)
Q Consensus 206 --~-----------------~---------~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~----- 241 (365)
+ . + +++.-+......+..++|.++++++++.... .+
T Consensus 268 ~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~ 347 (608)
T PF10345_consen 268 DEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLS 347 (608)
T ss_pred CCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHH
Confidence 0 0 0 1111122334556666888888888764211 11
Q ss_pred ---hhhHHHHhHHHHHH-HHHHHhhccCChhHHHHHHHHHHhccccCCC-cch--hHHHHHHHHHHHHHhCCCccHHHHH
Q 036703 242 ---EKRYWQRYIYLWIN-YALYKEVDAGDLERTRDVYRTLFIFYFSFSP-RME--ERRIFKKYIEMELCLGNIDPCRKLY 314 (365)
Q Consensus 242 ---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~A~~~~ 314 (365)
....|...+...+. +..+...-.+++..|....+.+......... ++. .+.++...|..+...|+.+.|...|
T Consensus 348 ~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y 427 (608)
T PF10345_consen 348 EASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQY 427 (608)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11123222222111 2222224678898898888877765322211 101 1666777788888999999999999
Q ss_pred H
Q 036703 315 E 315 (365)
Q Consensus 315 ~ 315 (365)
.
T Consensus 428 ~ 428 (608)
T PF10345_consen 428 Q 428 (608)
T ss_pred h
Confidence 8
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.45 E-value=0.046 Score=44.92 Aligned_cols=232 Identities=14% Similarity=0.073 Sum_probs=133.7
Q ss_pred HhhcchHHHHHHHHHHHhhhh-cCC---hhhHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHhccCCC-------c---
Q 036703 98 MKMGEVDRARNVYECAVEIFL-ADD---HDEAEQLFVAFAKFEEMGCNCK-ETDRARCIYKFALDRIPK-------G--- 162 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~-------~--- 162 (365)
.+.|+++.|...+.++-.. . ..+ ...-..+.++.|.-.. ..+ +++.|...++++.+.... .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~-~~~~~~~~~~~La~~~yn~G~~l~---~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL-LNSLDPDMAEELARVCYNIGKSLL---SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG 79 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH-HhcCCcHHHHHHHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence 3567777777777776655 3 111 1112445566666666 677 888888888888776311 0
Q ss_pred --hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-C
Q 036703 163 --RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP-P 239 (365)
Q Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~ 239 (365)
-...+...++..+...+..+. ..+|..+.+.+-...|+.+.++.....+....++.+.+.+.+.+++...+ .
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~-----~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~ 154 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYES-----VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS 154 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc
Confidence 123345555666666666554 44688888888888999999888888877778999999999999999865 2
Q ss_pred chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHH-----HHHhCC------Cc
Q 036703 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM-----ELCLGN------ID 308 (365)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------~~ 308 (365)
+.. ....+...... .......+...+...+..... |.++.|....-+ ....++ .+
T Consensus 155 e~~-------~~~~l~~i~~l--~~~~~~~a~~~ld~~l~~r~~-----~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~ 220 (278)
T PF08631_consen 155 ESN-------FDSILHHIKQL--AEKSPELAAFCLDYLLLNRFK-----SSEDQWLEKLVLTRVLLTTQSKDLSSSEKIE 220 (278)
T ss_pred cch-------HHHHHHHHHHH--HhhCcHHHHHHHHHHHHHHhC-----CChhHHHHHHHHHHHHHHcCCccccchhHHH
Confidence 221 22333333221 334456676776666654222 221102221111 112222 22
Q ss_pred cHHHHHHHHHhh--CcchH-------HHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 309 PCRKLYEKYLEW--SPENC-------YAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 309 ~A~~~~~~al~~--~p~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
....+++...+. .|-+. .+..+.|.-..+.+++++|...|+-++
T Consensus 221 ~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 221 SLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233333322211 12111 223344666777899999999999776
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.0069 Score=45.24 Aligned_cols=111 Identities=15% Similarity=0.089 Sum_probs=81.8
Q ss_pred HHHHHHhCCCch---HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 9 WDRVVTLSPRVD---QLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 9 ~~~~l~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
.++....+|.+. .+-..++..+...|++++|...++.++....+ .-+-..++.+....|.++.|...+.....
T Consensus 75 ~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~ 154 (207)
T COG2976 75 AEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE 154 (207)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence 344444444432 22445677778899999999999999865554 34556788999999999999998865433
Q ss_pred hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
..= ........|+++...|+-++|+..|++++.. .+++
T Consensus 155 ~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~-~~s~ 192 (207)
T COG2976 155 ESW-AAIVAELRGDILLAKGDKQEARAAYEKALES-DASP 192 (207)
T ss_pred ccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc-cCCh
Confidence 221 3445667799999999999999999999999 7543
No 273
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.41 E-value=0.00038 Score=58.94 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=92.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703 27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR 105 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 105 (365)
+...+..++++.|+..|.++++++|+ ...|-..+..+.+.+++..|+.-+.++++.+|.....+..-|...+..+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 45556678899999999999999998 66777777888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703 106 ARNVYECAVEIFLADDHDEAEQLFVAFAKFE 136 (365)
Q Consensus 106 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
|+..|+..... .|++ +.+...+..+.
T Consensus 91 A~~~l~~~~~l-~Pnd----~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 91 ALLDLEKVKKL-APND----PDATRKIDECN 116 (476)
T ss_pred HHHHHHHhhhc-CcCc----HHHHHHHHHHH
Confidence 99999999999 9988 66666554443
No 274
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.37 E-value=0.019 Score=48.84 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=102.7
Q ss_pred HHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh---------h-----CC------------C-hH---HHHHHHH
Q 036703 12 VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH---------W-----MP------------D-HE---GWLSYIK 61 (365)
Q Consensus 12 ~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---------~-----~p------------~-~~---~~~~~~~ 61 (365)
.++.+|...+++..++.++..+|+...|..+.+||+- . ++ + .. +...++.
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 4456799999999999999999999999999988863 1 11 1 12 3345566
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCc-chHHHHHHHHHHH-hhcchHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHh
Q 036703 62 FKLRYNEVQRARHIFERLVQCHPY-NLSAWINFADFEM-KMGEVDRARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEM 138 (365)
Q Consensus 62 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (365)
...+.|-+..|.++.+-++..+|. |+-....+.+.+. +.++++--+++++..... ...+ -...|..-+..+-.+.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~-~~~~~~~~lPn~a~S~aLA~~- 189 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK-CYRNWLSLLPNFAFSIALAYF- 189 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh-hhhhhhhhCccHHHHHHHHHH-
Confidence 777899999999999999999998 7766666666655 467777777777765542 1110 0001234444444444
Q ss_pred ccccchh---------------HHHHHHHHHHhccCCC
Q 036703 139 GCNCKET---------------DRARCIYKFALDRIPK 161 (365)
Q Consensus 139 ~~~~~~~---------------~~A~~~~~~~l~~~p~ 161 (365)
..++. ++|...+.+|+...|.
T Consensus 190 --~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 190 --RLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred --HhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 44544 8999999999998886
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.11 Score=46.84 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=70.4
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703 197 EDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT 276 (365)
Q Consensus 197 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 276 (365)
+.....-|.+....-.+++++...|--++|.+.|-+.- .|... +.. + ...++..+|.++.++
T Consensus 842 E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pkaA--------v~t------C--v~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 842 EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKAA--------VHT------C--VELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHHH--------HHH------H--HHHHHHHHHHHHHHh
Confidence 34444567777888888888888888888888776632 23221 111 1 244555666665544
Q ss_pred HHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc-chhHHHHHH
Q 036703 277 LFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD-ETERARAIF 348 (365)
Q Consensus 277 a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~ 348 (365)
--- |. ..+....+.-....++.-+|++.++++-.. -+-..+...++.-+...+ .+.+..++|
T Consensus 904 ~~l---------~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~-~daarll~qmae~e~~K~~p~lr~KklY 967 (1189)
T KOG2041|consen 904 FQL---------PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRH-LDAARLLSQMAEREQEKYVPYLRLKKLY 967 (1189)
T ss_pred ccc---------hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccc-hhHHHHHHHHhHHHhhccCCHHHHHHHH
Confidence 321 44 333444455555678888888888887332 224455555555444333 234444444
No 276
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.011 Score=45.82 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--------hCCc----------chHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 55 GWLSYIKFKLRYNEVQRARHIFERLVQ--------CHPY----------NLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~p~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+...-|+-+.+.|++.+|...|+.|+. -.|. ...++.++++++...|++-++++.....+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 444556666788999999999998765 2343 3456888999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.|.+ ..+++..|..+. ..-+..+|..-|.+++...|.-
T Consensus 260 -~~~n----vKA~frRakAha---a~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 260 -HPGN----VKAYFRRAKAHA---AVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred -CCch----HHHHHHHHHHHH---hhcCHHHHHHHHHHHHhcChhh
Confidence 8888 999999999999 8889999999999999999875
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.30 E-value=0.036 Score=47.19 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=92.7
Q ss_pred HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC-----------C-----------hhh---HHHHHHHHH
Q 036703 79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD-----------D-----------HDE---AEQLFVAFA 133 (365)
Q Consensus 79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~-----------~~~---~~~~~~~~~ 133 (365)
.++.+|.+.+.++.++.++..+|+...|.++.++|+-. +.. + ..+ ...+...++
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-FERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 35678888888888888888888888888888777644 110 0 111 123344566
Q ss_pred HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC-----CHH
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM-----NYD 208 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~-----~~~ 208 (365)
.... +.|-+..|.++.+-.++.+|..+...+....-.+..+.+.++- -+..++........ -+.
T Consensus 111 ~~L~---~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~--------Li~~~~~~~~~~~~~~~~~lPn 179 (360)
T PF04910_consen 111 QSLG---RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQW--------LIDFSESPLAKCYRNWLSLLPN 179 (360)
T ss_pred HHHH---hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHH--------HHHHHHhHhhhhhhhhhhhCcc
Confidence 6677 8999999999999999999985422222222223334444432 22233332221111 112
Q ss_pred HHHHHHHHHHHhCCH---------------HHHHHHHHHHHhcCCCc
Q 036703 209 TWFDYIRLEERVGNQ---------------ERVREVYERAIANVPPA 240 (365)
Q Consensus 209 ~~~~~~~~~~~~~~~---------------~~A~~~~~~~~~~~p~~ 240 (365)
.-+..+..+...++. +.|...+.+|+...|.-
T Consensus 180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 344445555556665 89999999999999874
No 278
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.30 E-value=0.00056 Score=35.58 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703 55 GWLSYIKFKLRYNEVQRARHIFERLVQCHP 84 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 84 (365)
+|..++.++...|++++|...|+++++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444455555555555555555554444
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.28 E-value=0.00073 Score=35.13 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCC
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMP 51 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 51 (365)
.+|..+|.++...|++++|...|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566666666666666666666666666555
No 280
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.23 E-value=0.0083 Score=39.40 Aligned_cols=65 Identities=8% Similarity=-0.058 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHH
Q 036703 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQ 70 (365)
Q Consensus 6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~ 70 (365)
...+++.+..+|++..+.+.++..+...|++++|+..+-.+++.+++ ...-..+..+....|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 56688889999999999999999999999999999999999988876 345555666665555533
No 281
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.20 E-value=0.19 Score=46.62 Aligned_cols=301 Identities=12% Similarity=0.084 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHHh-hCCC----hHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCc--ch----HHHHHHHHHHHhhcch
Q 036703 36 VAGARQIFERWMH-WMPD----HEGWLSYIKFKL-RYNEVQRARHIFERLVQCHPY--NL----SAWINFADFEMKMGEV 103 (365)
Q Consensus 36 ~~~A~~~~~~al~-~~p~----~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~p~--~~----~~~~~~~~~~~~~~~~ 103 (365)
+..|++.++-+++ ..+. ..+.+.+|.++. ...+++.|+..+++++..... -. ..-..++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4457888888873 3333 467888998876 678999999999999887643 22 2234557777777766
Q ss_pred HHHHHHHHHHHhhhhcCChhhHHHHHHHHH--HHHHhccccchhHHHHHHHHHHhccC--CCchhHHHHHHHHH--HHHH
Q 036703 104 DRARNVYECAVEIFLADDHDEAEQLFVAFA--KFEEMGCNCKETDRARCIYKFALDRI--PKGRAEDLYRKFLA--FEKQ 177 (365)
Q Consensus 104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~--~~~~ 177 (365)
. |...+++.++. ............+.+. .+.. ..+++..|++.++.+.... +.+....+...+.. +...
T Consensus 117 ~-a~~~l~~~I~~-~~~~~~~~w~~~frll~~~l~~---~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 117 A-ALKNLDKAIED-SETYGHSAWYYAFRLLKIQLAL---QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR 191 (608)
T ss_pred H-HHHHHHHHHHH-HhccCchhHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 6 99999999987 5442011122222222 2333 3479999999999888754 23322333333332 2333
Q ss_pred cCCchhhhHHHHHHHHHHHHHHH------HcCC----CCHHHHHHHHHHH--HHhCCHHHHHHHHHH---HHhc---CC-
Q 036703 178 YGDREGIEDAIAGKMRLQYEDGV------RKNP----MNYDTWFDYIRLE--ERVGNQERVREVYER---AIAN---VP- 238 (365)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~l------~~~p----~~~~~~~~~~~~~--~~~~~~~~A~~~~~~---~~~~---~p- 238 (365)
.+.+.+ +.+..+++. +.+| ....+|..+.++. ...|++..+...+.+ .+.. .|
T Consensus 192 ~~~~~d--------~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~ 263 (608)
T PF10345_consen 192 RGSPDD--------VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPS 263 (608)
T ss_pred CCCchh--------HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCcc
Confidence 443332 222333221 1122 2345677776653 556776666555433 3322 21
Q ss_pred --C---c-----------------hhhhHHH----HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC------C
Q 036703 239 --P---A-----------------EEKRYWQ----RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS------P 286 (365)
Q Consensus 239 --~---~-----------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~------~ 286 (365)
. + +....|- .++-++..-+... ...+..++|.++++++++.-.... .
T Consensus 264 w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~-~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~ 342 (608)
T PF10345_consen 264 WPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHN-LYKGSMDKSEKFLEKALKQIEKLKIKSPSAP 342 (608)
T ss_pred CCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHH-hhccCchHHHHHHHHHHHHHHHhhccCCCCC
Confidence 0 0 0000010 0111222222222 355666689999988887621111 0
Q ss_pred cch-----hHHHHHH---------HHHHHHHhCCCccHHHHHHHHHhhC---cc------hHHHHHHHHHHHhhccchhH
Q 036703 287 RME-----ERRIFKK---------YIEMELCLGNIDPCRKLYEKYLEWS---PE------NCYAWSKYTELEKSLDETER 343 (365)
Q Consensus 287 ~~~-----~~~~~~~---------~~~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~~~~~~~~~g~~~~ 343 (365)
..+ +...|.. .+....-.+++..|....+.+.+.. |. .+.+....|..+...|+.+.
T Consensus 343 ~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~ 422 (608)
T PF10345_consen 343 SESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEA 422 (608)
T ss_pred CcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHH
Confidence 001 0111222 2222345788989999888777652 22 36678888888999999999
Q ss_pred HHHHHHH
Q 036703 344 ARAIFEL 350 (365)
Q Consensus 344 A~~~~~~ 350 (365)
|...|.+
T Consensus 423 A~~~y~~ 429 (608)
T PF10345_consen 423 ALYQYQK 429 (608)
T ss_pred HHHHHhh
Confidence 9999983
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.15 E-value=0.1 Score=42.87 Aligned_cols=122 Identities=12% Similarity=0.099 Sum_probs=83.2
Q ss_pred HhcCChhHHHHHHHHHHhhC----CC-----hHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC----C---c-------c
Q 036703 31 ENLGNVAGARQIFERWMHWM----PD-----HEGWLSYIKFKLRYN-EVQRARHIFERLVQCH----P---Y-------N 86 (365)
Q Consensus 31 ~~~g~~~~A~~~~~~al~~~----p~-----~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~----p---~-------~ 86 (365)
..+|+.+.|...+.|+-... |+ ....+..|......+ +++.|...++++.+.- + . .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888876543 33 234555666666777 8888888888887762 1 1 1
Q ss_pred hHHHHHHHHHHHhhcch---HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 87 LSAWINFADFEMKMGEV---DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
..+...++..+...+.. ++|..+.+.+... .|+. +.++.....+.. +.++.+++.+.+.+++...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~----~~~~~L~l~il~---~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNK----PEVFLLKLEILL---KSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCC----cHHHHHHHHHHh---ccCChhHHHHHHHHHHHhcc
Confidence 23456667777776644 4556666666666 6665 777777777777 77888888888888888655
No 283
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.14 E-value=0.00075 Score=34.70 Aligned_cols=32 Identities=44% Similarity=0.822 Sum_probs=28.1
Q ss_pred CCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703 305 GNIDPCRKLYEKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 305 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 336 (365)
|+++.|+.+|++++...|.++.+|..++.++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 46788999999999999999999999998764
No 284
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.12 E-value=0.00093 Score=33.41 Aligned_cols=27 Identities=26% Similarity=0.667 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRM 29 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 29 (365)
++.|+.+|++.+..+|+ +..|+.+|.+
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 34555555555555544 4555555443
No 285
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.10 E-value=0.0014 Score=32.80 Aligned_cols=28 Identities=36% Similarity=0.813 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHhhCCChHHHHHHHHHH
Q 036703 36 VAGARQIFERWMHWMPDHEGWLSYIKFK 63 (365)
Q Consensus 36 ~~~A~~~~~~al~~~p~~~~~~~~~~~~ 63 (365)
++.|+.+|++.+...|++..|+.+|.+.
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAkFE 30 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAKFE 30 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHhh
Confidence 4556666666666666666666666553
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.03 E-value=0.0016 Score=33.49 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 208 DTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999999974
No 287
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.97 E-value=0.003 Score=32.43 Aligned_cols=26 Identities=19% Similarity=0.384 Sum_probs=10.6
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703 59 YIKFKLRYNEVQRARHIFERLVQCHP 84 (365)
Q Consensus 59 ~~~~~~~~~~~~~A~~~~~~~l~~~p 84 (365)
+|.++...|++++|...|++++...|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 33333334444444444444444443
No 288
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.91 E-value=0.25 Score=43.05 Aligned_cols=207 Identities=11% Similarity=0.058 Sum_probs=130.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF 96 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 96 (365)
|-+......+..++-...+..-...++.+++....+-..+..++.+|... ..++--.+.++.++.+-++...-..++..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44444555555555555566667788888888887777888899999877 45778888999999999888888888988
Q ss_pred HHhhcchHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703 97 EMKMGEVDRARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 175 (365)
|.+ ++...+...|.+++....|.. ...-.++|..+..+- ..+.+.-+....+.-....... ..+.+.. .+
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-----~dD~D~fl~l~~kiqt~lg~~~-~~Vl~qd--v~ 212 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-----GDDKDFFLRLQKKIQTKLGEGR-GSVLMQD--VY 212 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc-----cccHHHHHHHHHHHHHhhccch-HHHHHHH--HH
Confidence 887 888899999999988833421 011234666554421 2345555555544443333321 1222222 22
Q ss_pred HHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHh
Q 036703 176 KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER--------------------VGNQERVREVYERAIA 235 (365)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~~~~ 235 (365)
..+...+. +.+|+.+..-.++.+..+..+...++..+.. -.++..+..-|++.+.
T Consensus 213 ~~Ys~~eN-----~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~ 287 (711)
T COG1747 213 KKYSENEN-----WTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMH 287 (711)
T ss_pred HHhccccC-----HHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence 22222111 3468888888888888887777777766554 3455566666666554
Q ss_pred cCC
Q 036703 236 NVP 238 (365)
Q Consensus 236 ~~p 238 (365)
...
T Consensus 288 f~e 290 (711)
T COG1747 288 FDE 290 (711)
T ss_pred ecc
Confidence 433
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.91 E-value=0.0025 Score=33.64 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWM 47 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al 47 (365)
|..+|.++.+.|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 290
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.83 E-value=0.0014 Score=53.18 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
++|++.|.+++.++|.+..++...+.+++..++...|+.-+..+++++|+ ..-+...+......|++++|...+..+++
T Consensus 131 ~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 131 DTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred hhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence 44444555555555554444555555555555555555555555555554 22222233333334455555555555444
Q ss_pred hC
Q 036703 82 CH 83 (365)
Q Consensus 82 ~~ 83 (365)
.+
T Consensus 211 ld 212 (377)
T KOG1308|consen 211 LD 212 (377)
T ss_pred cc
Confidence 43
No 291
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.83 E-value=0.0033 Score=32.15 Aligned_cols=30 Identities=37% Similarity=0.916 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 68 EVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 68 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
+.+.|+.+|++++...|.++.+|..++.+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 445555555555555555555555555443
No 292
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.014 Score=47.46 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhh---CCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHW---MPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA 94 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 94 (365)
+.-+..-|.-+.+..++..|+..|.++++. +|+ ..++...+-+....|++..|+.-..+++..+|++..++++-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 344666788888888999999999999974 344 467888888888899999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhh
Q 036703 95 DFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
.++.....+..|....+..+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999888888776
No 293
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.78 E-value=0.0061 Score=48.83 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=28.9
Q ss_pred HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+.|+.++|..+|+.++...|+++++...+|.+....++.-+|-.+|-+|+.. .|.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti-sP~n 183 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI-SPGN 183 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee-CCCc
Confidence 3445555555555555555555555555555555445555555555555555 4444
No 294
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.75 E-value=0.062 Score=37.61 Aligned_cols=115 Identities=17% Similarity=0.332 Sum_probs=69.4
Q ss_pred HHHHHHHHh-ccCCCchhHHHHHHHHHHHHHc---CCchhhhHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHhC
Q 036703 148 ARCIYKFAL-DRIPKGRAEDLYRKFLAFEKQY---GDREGIEDAIAGKMRLQYEDGV--RKNPMNYDTWFDYIRLEERVG 221 (365)
Q Consensus 148 A~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~ 221 (365)
-+..|+..| .....++...+|..++...... |.....-..+++++...|...- +.+|....+|..+++.. +
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~ 80 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---D 80 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C
Confidence 345566555 4344444578999999887643 2222211223344444443321 23455567888888763 3
Q ss_pred CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703 222 NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT 276 (365)
Q Consensus 222 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 276 (365)
+ ..++|.-+....-... ...++..+|.++| ..|++.+|.++|+.
T Consensus 81 d---p~~if~~L~~~~IG~~-------~AlfYe~~A~~lE-~~g~~~~A~~iy~~ 124 (125)
T smart00777 81 E---PRELFQFLYSKGIGTK-------LALFYEEWAQLLE-AAGRYKKADEVYQL 124 (125)
T ss_pred C---HHHHHHHHHHCCcchh-------hHHHHHHHHHHHH-HcCCHHHHHHHHHc
Confidence 3 5667777666533322 2448888999987 89999999999875
No 295
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.29 Score=43.24 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHHh------------CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh-----h---------------
Q 036703 2 IDHGRNAWDRVVTL------------SPRVDQLWNNYIRMEENLGNVAGARQIFERWMH-----W--------------- 49 (365)
Q Consensus 2 ~~~A~~~~~~~l~~------------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~--------------- 49 (365)
|++|...|.-++.. +|...+..+.++.+...+|+.+.|..+.+|++= .
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Confidence 56677777777664 356678899999999999999988887777762 1
Q ss_pred -CCChH----HHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-chHHHHHHHHHHHh-hcchHHHHHHHHHHHh-----hh
Q 036703 50 -MPDHE----GWLSYIKFKLRYNEVQRARHIFERLVQCHPY-NLSAWINFADFEMK-MGEVDRARNVYECAVE-----IF 117 (365)
Q Consensus 50 -~p~~~----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~-----~~ 117 (365)
.|... +...+.....+.|=+..|.+..+-+++.+|. +|-....+.++|.- ..+|+=-+++++..-. .
T Consensus 334 ~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~- 412 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ- 412 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh-
Confidence 12222 1223344455678899999999999999998 77777777776654 5666666666666522 2
Q ss_pred hcCChhhHHHHHHHHHHHHHhccccch---hHHHHHHHHHHhccCCC
Q 036703 118 LADDHDEAEQLFVAFAKFEEMGCNCKE---TDRARCIYKFALDRIPK 161 (365)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~ 161 (365)
.|+ ...-..+|.++. .... ...|+..+.+|++..|.
T Consensus 413 ~PN-----~~yS~AlA~f~l---~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 413 LPN-----FGYSLALARFFL---RKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred cCC-----chHHHHHHHHHH---hcCChhhHHHHHHHHHHHHHhCcH
Confidence 333 334456677776 5544 67899999999998885
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.46 Score=43.15 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=68.4
Q ss_pred HHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHH----------HHHHHHHHhccHHHHHHHHHHHHHh
Q 036703 13 VTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWL----------SYIKFKLRYNEVQRARHIFERLVQC 82 (365)
Q Consensus 13 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~~~~~~~~~~~~~A~~~~~~~l~~ 82 (365)
++.+|. +.+|..++......-.++-|...|-+.-.. |....-. ..+.+..-.|++++|...|-.+-..
T Consensus 686 iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 686 IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence 344666 778888887777777777777777665322 2211111 1223333346777777776443222
Q ss_pred CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703 83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL 156 (365)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 156 (365)
+- - ..+..+.|++-+..++++..-.- .++.....+|.++|..+. ....+++|.++|..+-
T Consensus 764 DL-A-------ielr~klgDwfrV~qL~r~g~~d---~dD~~~e~A~r~ig~~fa---~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 764 DL-A-------IELRKKLGDWFRVYQLIRNGGSD---DDDEGKEDAFRNIGETFA---EMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hh-h-------HHHHHhhhhHHHHHHHHHccCCC---cchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcc
Confidence 21 1 12333444444444444332111 112233567777777777 7777777777777653
No 297
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.67 E-value=0.017 Score=50.62 Aligned_cols=92 Identities=10% Similarity=0.153 Sum_probs=82.4
Q ss_pred HHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHH
Q 036703 29 MEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRA 106 (365)
Q Consensus 29 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A 106 (365)
.....|+...|++.+.+|+...|. ......++.+....|-...|..++.+++.++...+-.++.+|..+....+.+.|
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 334579999999999999999998 345678899988888888899999999999987888999999999999999999
Q ss_pred HHHHHHHHhhhhcCC
Q 036703 107 RNVYECAVEIFLADD 121 (365)
Q Consensus 107 ~~~~~~a~~~~~~~~ 121 (365)
++.|+.|++. .|++
T Consensus 696 ~~~~~~a~~~-~~~~ 709 (886)
T KOG4507|consen 696 LEAFRQALKL-TTKC 709 (886)
T ss_pred HHHHHHHHhc-CCCC
Confidence 9999999999 8887
No 298
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.66 E-value=0.0022 Score=48.94 Aligned_cols=59 Identities=24% Similarity=0.323 Sum_probs=49.5
Q ss_pred HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703 301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDL 359 (365)
Q Consensus 301 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 359 (365)
..+.++.+.|.+.|.+++.+-|+....|..++....+.|+++.|.+.|++.++.+|.|.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34567888888888888888888888888888888888888888888888888888665
No 299
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0095 Score=48.33 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=79.3
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHH
Q 036703 253 WINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330 (365)
Q Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 330 (365)
+..-|..+ +..+++..|+..|.++++..-.+ |+ ..+|.+-+.+..-.|++..|+.-..+++..+|++..++..
T Consensus 84 ~KeeGN~~-fK~Kryk~A~~~Yt~Glk~kc~D----~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 84 YKEEGNEY-FKEKRYKDAVESYTEGLKKKCAD----PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHhHHH-HHhhhHHHHHHHHHHHHhhcCCC----ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 33345554 57889999999999999984333 44 6778888888889999999999999999999999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHhcC
Q 036703 331 YTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 331 ~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
-+.+...+..+.+|....+..+..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999998877777776665543
No 300
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.66 E-value=0.0053 Score=32.35 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHH
Q 036703 56 WLSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 56 ~~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
|..+|.++...|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
No 301
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.23 Score=39.27 Aligned_cols=226 Identities=10% Similarity=0.060 Sum_probs=134.2
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHH-HHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG-NVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQ-RARHIFERL 79 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~-~A~~~~~~~ 79 (365)
++|..+-+.++..+|.+..+|.-.-.+....+ +..+-...+.+.++-+|. -.+|...-.+....|++. +-.++.+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 45777777788888888888776655555443 566677777777877777 577877766666777777 677778888
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh--c-cccchhHHHHHHHHHHh
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM--G-CNCKETDRARCIYKFAL 156 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~A~~~~~~~l 156 (365)
+..+..+..+|...--+....+.++.-+.+..+.++. .--+ -.+|...--+... + ...-..+.-+.+..+.|
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~-Di~N----NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE-DIRN----NSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH-hhhc----cchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 8888778888877776777777777777777777776 3332 3444421110000 0 01123445566777888
Q ss_pred ccCCCchhHHHHHHHHHHHHH-cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH------HhCCHH---HH
Q 036703 157 DRIPKGRAEDLYRKFLAFEKQ-YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE------RVGNQE---RV 226 (365)
Q Consensus 157 ~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~------~~~~~~---~A 226 (365)
...|.+. ..|.-+..+... .|-... ...++-+..++ ++....++.++..+.+++. ..+.-+ +|
T Consensus 215 ~~vP~Ne--SaWnYL~G~l~~d~gl~s~--s~vv~f~~~l~---~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a 287 (318)
T KOG0530|consen 215 LLVPNNE--SAWNYLKGLLELDSGLSSD--SKVVSFVENLY---LQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKA 287 (318)
T ss_pred HhCCCCc--cHHHHHHHHHHhccCCcCC--chHHHHHHHHh---hccCCCChhHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 8999984 567777666654 441100 00112222232 2333445556656666552 122333 45
Q ss_pred HHHHHHHH-hcCCCc
Q 036703 227 REVYERAI-ANVPPA 240 (365)
Q Consensus 227 ~~~~~~~~-~~~p~~ 240 (365)
.++|+..- +.+|-.
T Consensus 288 ~~ly~~La~~~DpiR 302 (318)
T KOG0530|consen 288 VKLYEDLAIKVDPIR 302 (318)
T ss_pred HHHHHHHhhccCcHH
Confidence 55665543 445543
No 302
>PRK10941 hypothetical protein; Provisional
Probab=96.65 E-value=0.0088 Score=48.26 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
.+..++-..+.+.++++.|..+.++++...|+++.-|...|.++.+.|....|..-++.-++++| +.|.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P-~dp~ 250 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP-EDPI 250 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-Cchh
Confidence 34455666788899999999999999999999999999999999999999999999999999999 6554
No 303
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.62 E-value=0.0075 Score=48.36 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703 24 NNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD 95 (365)
Q Consensus 24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 95 (365)
...+.-..+.|+.++|..+|+.|+.+.|. +++...++.+....++.-+|..+|-+++.++|.+.++....+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33445556789999999999999999999 8999999999999999999999999999999999888766543
No 304
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.25 Score=39.06 Aligned_cols=193 Identities=12% Similarity=0.093 Sum_probs=131.3
Q ss_pred HHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchH-H
Q 036703 29 MEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY-NEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD-R 105 (365)
Q Consensus 29 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-~ 105 (365)
+..+......|.++-+.++.++|- -..|.-.-.+.... .+..+-...+...++.+|.+..+|...-.+....|+.. +
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 344556678899999999999998 57776655554443 36778888999999999999999999888888888877 7
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH-HHHHcCCchhh
Q 036703 106 ARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGI 184 (365)
Q Consensus 106 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~~~~~~~ 184 (365)
-+++.+.++.. ...+ ..+|...--+.. .-+.++.-+.+-.+.++.+--+. ..|..--- +-...|-.+
T Consensus 132 ELef~~~~l~~-DaKN----YHaWshRqW~~r---~F~~~~~EL~y~~~Lle~Di~NN--SAWN~Ryfvi~~~~~~~~-- 199 (318)
T KOG0530|consen 132 ELEFTKLMLDD-DAKN----YHAWSHRQWVLR---FFKDYEDELAYADELLEEDIRNN--SAWNQRYFVITNTKGVIS-- 199 (318)
T ss_pred hHHHHHHHHhc-cccc----hhhhHHHHHHHH---HHhhHHHHHHHHHHHHHHhhhcc--chhheeeEEEEeccCCcc--
Confidence 78888888888 6666 778877766666 66778888887777776543332 23332110 000112111
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hC--CHHHHHHHHHHHH
Q 036703 185 EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER-VG--NQERVREVYERAI 234 (365)
Q Consensus 185 ~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~-~~--~~~~A~~~~~~~~ 234 (365)
...++.-.....+.+...|+|.++|..+.-++.. .| ...+.........
T Consensus 200 -~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 200 -KAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 1122334456677888999999999998888764 44 2334444444444
No 305
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.50 E-value=0.16 Score=35.54 Aligned_cols=111 Identities=14% Similarity=0.295 Sum_probs=73.1
Q ss_pred HHHHHHHHH-hc-CCCchhhhHHHHhHHHHHHHHHHHhhc--c-CChhHHHHHHHHHHhccccCCCcc--hh-HHHHHHH
Q 036703 226 VREVYERAI-AN-VPPAEEKRYWQRYIYLWINYALYKEVD--A-GDLERTRDVYRTLFIFYFSFSPRM--EE-RRIFKKY 297 (365)
Q Consensus 226 A~~~~~~~~-~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~a~~~~~~a~~~~~~~~~~~--~~-~~~~~~~ 297 (365)
-+..|+..+ .. ..++| +.+|..+..+.+-. . +.-..-..+++++++...+...-- |. ..+|..+
T Consensus 4 ~r~~~e~~i~~~~~~dDP--------L~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~y 75 (125)
T smart00777 4 QRQAFEQELQDLYEGDDP--------LDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKY 75 (125)
T ss_pred HHHHHHHHHHhcccCCCC--------hHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHH
Confidence 355666666 32 22333 55888888876411 2 234455677888887632221110 23 4667777
Q ss_pred HHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHH
Q 036703 298 IEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFEL 350 (365)
Q Consensus 298 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 350 (365)
++. .++++.+|..+... ....+.++..+|.++...|++.+|.++|+.
T Consensus 76 a~~------~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 76 ADN------CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHh------cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 764 35688888888765 455788999999999999999999999975
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.49 E-value=0.069 Score=40.37 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703 208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 287 (365)
.++..+|..+.+.|+.+.|.+.|.++...+..... .+.+++...... ...+++..+.....++-....... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~------~id~~l~~irv~-i~~~d~~~v~~~i~ka~~~~~~~~-d 108 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH------KIDMCLNVIRVA-IFFGDWSHVEKYIEKAESLIEKGG-D 108 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH------HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhccc-h
Confidence 56788999999999999999999999887655443 266777777775 678999999999888877632211 1
Q ss_pred chh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703 288 MEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWS 321 (365)
Q Consensus 288 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 321 (365)
|.. ..+-..-|-.++..++|..|-..|-.+....
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 111 3333344445567889999988887775443
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.38 E-value=0.087 Score=39.85 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPY---NLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAEQL 128 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~ 128 (365)
..+..+++++.+.|+.+.|.+.|.++...... -.++++.+..+....+++..+.....++-.. ... +......+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~-~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL-IEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhccchHHHHHHH
Confidence 56667777777777777777777777665432 2455666666677777777777777776655 222 11111222
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 129 FVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
-..-|..+. ..+++.+|-..|-.+.....
T Consensus 116 k~~~gL~~l---~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 116 KVYEGLANL---AQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHH---HhchHHHHHHHHHccCcCCC
Confidence 333344445 66788888888777665443
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.34 E-value=0.81 Score=41.85 Aligned_cols=255 Identities=12% Similarity=0.023 Sum_probs=133.1
Q ss_pred ccHHHHHHHHHHHHHh-----CCcchHHHHHHHHHHHhhc-----chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703 67 NEVQRARHIFERLVQC-----HPYNLSAWINFADFEMKMG-----EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE 136 (365)
Q Consensus 67 ~~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
.|.+.|...|+.+... .-..+.....+|.+|.+.. +.+.|..+|.++... .. +...+.+|.++
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g~------~~a~~~lg~~~ 335 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-GN------PDAQYLLGVLY 335 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-CC------chHHHHHHHHH
Confidence 4666666666666541 0113445566677766632 456677777777766 22 33555556665
Q ss_pred HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH-HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 036703 137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK-QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIR 215 (365)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~ 215 (365)
..+....++..|.++|..|....-. .....++.++. ..|.... ..+|...|.++-+.+ ++.+...++.
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~----~A~~~la~~y~~G~gv~r~-----~~~A~~~~k~aA~~g--~~~A~~~~~~ 404 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI----LAIYRLALCYELGLGVERN-----LELAFAYYKKAAEKG--NPSAAYLLGA 404 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhCCCcCCC-----HHHHHHHHHHHHHcc--ChhhHHHHHH
Confidence 5110013456777777777654322 22333333222 2222221 336777777777765 3344444444
Q ss_pred HHHH-hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHH-HH---hhccCChhHHHHHHHHHHhccccCCCcchh
Q 036703 216 LEER-VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL-YK---EVDAGDLERTRDVYRTLFIFYFSFSPRMEE 290 (365)
Q Consensus 216 ~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 290 (365)
++.. .+.++.+...+......--..... ...++.... .. .....+...+...+.++... -.
T Consensus 405 ~~~~g~~~~~~~~~~~~~~a~~g~~~~q~------~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--------g~ 470 (552)
T KOG1550|consen 405 FYEYGVGRYDTALALYLYLAELGYEVAQS------NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ--------GN 470 (552)
T ss_pred HHHHccccccHHHHHHHHHHHhhhhHHhh------HHHHHHHhccccccccccccchhHHHHHHHHHHhc--------cC
Confidence 4322 255555444443333321111100 001111000 00 00122455666666666554 22
Q ss_pred HHHHHHHHHHHHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh-cc--chhHHHHHHHHHhcCcC
Q 036703 291 RRIFKKYIEMELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS-LD--ETERARAIFELAIAQPI 356 (365)
Q Consensus 291 ~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g--~~~~A~~~~~~a~~~~~ 356 (365)
......+++++.. ..+++.|...|.++.... .....+++.++.. .| .+..|...|+++...+.
T Consensus 471 ~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 471 ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence 4455566666543 346889999999998776 7777888877765 22 26889999999887665
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.28 E-value=0.022 Score=32.89 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHH
Q 036703 294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELE 335 (365)
Q Consensus 294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 335 (365)
...++..+.+.|++++|+.+.+.+++..|+|.++......+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 455667778999999999999999999999988766554443
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.21 E-value=0.13 Score=37.49 Aligned_cols=79 Identities=14% Similarity=0.027 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA 133 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (365)
...+.....-...++.+.+..++.-+-...|..+.+-+.-+.++...|++.+|+.+++.+... .|.. +..--.++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-~~~~----p~~kALlA 85 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-APGF----PYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-CCCC----hHHHHHHH
Confidence 444555666667778888888888888888888888888888888888888888888887777 6554 44444444
Q ss_pred HHHH
Q 036703 134 KFEE 137 (365)
Q Consensus 134 ~~~~ 137 (365)
.++.
T Consensus 86 ~CL~ 89 (160)
T PF09613_consen 86 LCLY 89 (160)
T ss_pred HHHH
Confidence 4444
No 311
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.20 E-value=0.0084 Score=45.97 Aligned_cols=57 Identities=16% Similarity=0.434 Sum_probs=36.2
Q ss_pred HHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Q 036703 30 EENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN 86 (365)
Q Consensus 30 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 86 (365)
....++.+.|.+.|.+++.+.|. ...|..++....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455666666666666666666 5666666666666666666666666666666644
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.16 E-value=0.068 Score=35.12 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703 73 RHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
...+++.++.+|++....+.++..+...|+++.|++.+-.+++. .+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~-dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR-DRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Ccc
Confidence 34566777777777777777777777777777777777777776 544
No 313
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.11 E-value=0.21 Score=33.84 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=66.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHH---HHHHHHHHHhc-----------cHHHHHHHHHHHHHhCCcchHHH
Q 036703 26 YIRMEENLGNVAGARQIFERWMHWMPD-HEGW---LSYIKFKLRYN-----------EVQRARHIFERLVQCHPYNLSAW 90 (365)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~---~~~~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~ 90 (365)
.+.-+...||.-+|+++.+..+..+++ ...| ..-|.++..+. -.-.+.+.|.++....|+.+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 356677889999999999999988887 3333 23344443322 23458888999999999888888
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+.+|+-+.....++++..--++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888766667777777777777765
No 314
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.09 E-value=0.81 Score=39.43 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=48.1
Q ss_pred HHHHHHHHHH--HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHH
Q 036703 291 RRIFKKYIEM--ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFEL 350 (365)
Q Consensus 291 ~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 350 (365)
.++-+.+++. ....|++.++.-.-.=..+..| ++.++..+|.+.....++++|..++..
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4455555544 4578999988887777788899 999999999999999999999998864
No 315
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.08 E-value=0.013 Score=29.48 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhCC
Q 036703 22 LWNNYIRMEENLGNVAGARQIFERWMHWMP 51 (365)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 51 (365)
+|..+|.++...|++++|...|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 316
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.07 E-value=1.3 Score=41.61 Aligned_cols=302 Identities=12% Similarity=0.025 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-----chHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY-----NLSAWIN 92 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~ 92 (365)
.+....-+..+...|.+++|+...-.| -+|. ..+....+.-....++.. .+..+++.-|. +|.+.+.
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence 566777777777888888877655433 2233 222222222222233332 33444444443 4566667
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCC-hh----hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch---h
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADD-HD----EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR---A 164 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~ 164 (365)
.+-......++.+|..+..++... .|.. ++ .....--..+.+.. ..|+++.|.++.+.++...|... .
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~-l~~~~~~~~~~l~ae~~aL~a~val---~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHF-LKAPMHSRQGDLLAEFQALRAQVAL---NRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHH-hCcCcccchhhHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhcccccchhh
Confidence 777777889999999999998887 5542 01 11122233456666 88999999999999999888753 2
Q ss_pred HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc----CCCCHHHHHHH--HHHHHHhCCHHHH--HHHHHHH---
Q 036703 165 EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK----NPMNYDTWFDY--IRLEERVGNQERV--REVYERA--- 233 (365)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~----~p~~~~~~~~~--~~~~~~~~~~~~A--~~~~~~~--- 233 (365)
.......+....-.|+.. +|+...+++.+. +.....+|..+ +.+...+|+...+ ...|...
T Consensus 497 ~~~~sv~~~a~~~~G~~~--------~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 497 IVALSVLGEAAHIRGELT--------QALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred hhhhhhhhHHHHHhchHH--------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 233444455555566644 566666665554 33344566555 4456777733222 2222222
Q ss_pred -HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccH
Q 036703 234 -IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPC 310 (365)
Q Consensus 234 -~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A 310 (365)
+...|.+.- .....+..+. ..-+.+.+..-..++++........ |. .-....++.++...|+.++|
T Consensus 569 ~l~q~~~~~f---------~~~~r~~ll~-~~~r~~~~~~ear~~~~~~~~~~~~-~~~~~~~~~~LA~l~~~~Gdl~~A 637 (894)
T COG2909 569 HLEQKPRHEF---------LVRIRAQLLR-AWLRLDLAEAEARLGIEVGSVYTPQ-PLLSRLALSMLAELEFLRGDLDKA 637 (894)
T ss_pred Hhhhcccchh---------HHHHHHHHHH-HHHHHhhhhHHhhhcchhhhhcccc-hhHHHHHHHHHHHHHHhcCCHHHH
Confidence 122232210 1111222211 1112444444444444432111100 22 12234788889999999999
Q ss_pred HHHHHHHHhhCcch--HHHHH-----HHHHHHhhccchhHHHHHHHH
Q 036703 311 RKLYEKYLEWSPEN--CYAWS-----KYTELEKSLDETERARAIFEL 350 (365)
Q Consensus 311 ~~~~~~al~~~p~~--~~~~~-----~~~~~~~~~g~~~~A~~~~~~ 350 (365)
...........-++ ...|. --..+....|+.+.+.....+
T Consensus 638 ~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 638 LAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99999887663222 11222 122334457888888887766
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.07 E-value=0.0081 Score=30.25 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHhhCc
Q 036703 294 FKKYIEMELCLGNIDPCRKLYEKYLEWSP 322 (365)
Q Consensus 294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p 322 (365)
+..+|.++...|++++|...|+++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444455555555544444444
No 318
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.05 E-value=1.1 Score=40.53 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--------------hCCcchHHHHHHHHHHHhhcchHHHHHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQ--------------CHPYNLSAWINFADFEMKMGEVDRARNVYECA 113 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 113 (365)
.-|..++.-....=+++-|+..|.+... .....| --..+|..+.-.|++.+|-++|.+.
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 4466666555555566666666654321 111111 1234455556667777777776653
No 319
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.92 E-value=0.3 Score=33.15 Aligned_cols=91 Identities=19% Similarity=0.090 Sum_probs=67.8
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCcchHH---HHHHHHHHHhhc----c-------hHHHHHHHHHHHhhhhcCChhhH
Q 036703 60 IKFKLRYNEVQRARHIFERLVQCHPYNLSA---WINFADFEMKMG----E-------VDRARNVYECAVEIFLADDHDEA 125 (365)
Q Consensus 60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~----~-------~~~A~~~~~~a~~~~~~~~~~~~ 125 (365)
+.-+...||+-+|+++.+..+..++++... ...-|.++.... + .-.+.++|.++... .|..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp~~---- 77 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SPDS---- 77 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-ChhH----
Confidence 456778999999999999999999887744 344455555433 2 23577888888888 6665
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
...++.+|+-+. ....|+++..--++++..
T Consensus 78 A~~L~~la~~l~---s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLG---SVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHHHHhcc
Confidence 778888887766 667788888888888764
No 320
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.90 E-value=0.54 Score=36.81 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=71.5
Q ss_pred ccchhHHHHHHHHHHhcc-----CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC--C----HHH
Q 036703 141 NCKETDRARCIYKFALDR-----IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM--N----YDT 209 (365)
Q Consensus 141 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~--~----~~~ 209 (365)
....+++|++.|.-|+-. .+....+.+++..+-++...|+ ...+...+.+|...|++++..... . ..+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-EENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 334567777777766532 2222346777888888877776 345556677899999999975432 2 467
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 210 WFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
.+.+|.+..+.|++++|...|.+++..-..+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 8889999999999999999999999874443
No 321
>PRK10941 hypothetical protein; Provisional
Probab=95.89 E-value=0.17 Score=41.03 Aligned_cols=64 Identities=14% Similarity=0.000 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
..+-..+.+.++++.|..+.++++...|+++.-+...|.++.+.|.+..|..-++..++. .|++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~-~P~d 248 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ-CPED 248 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-CCCc
Confidence 344566778899999999999999999999999999999999999999999999999999 9987
No 322
>PF13041 PPR_2: PPR repeat family
Probab=95.86 E-value=0.061 Score=30.74 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 86 NLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
|...|..+...+.+.|++++|.++|+++.+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3445555555555555555555555555554
No 323
>PF13041 PPR_2: PPR repeat family
Probab=95.68 E-value=0.073 Score=30.41 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYI 60 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 60 (365)
...|..+...+.+.|++++|.++|+++.+. .|+..++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555556666666666666666665542 34444444443
No 324
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.68 E-value=0.1 Score=40.82 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=66.4
Q ss_pred ccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCc-------cHHHHHHHHHhhC--cc----hHHH
Q 036703 263 DAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNID-------PCRKLYEKYLEWS--PE----NCYA 327 (365)
Q Consensus 263 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~A~~~~~~al~~~--p~----~~~~ 327 (365)
....+++|+..|.-|+-.......- |. ..++..++.++...|+.+ .|...|+++++.. |. ...+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 3456778888888776552111100 22 677888899998888844 5556666665543 21 3467
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703 328 WSKYTELEKSLDETERARAIFELAIAQPILDL 359 (365)
Q Consensus 328 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 359 (365)
...+|.+..+.|+.++|...|.+++.......
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 78899999999999999999999998765433
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.53 E-value=0.49 Score=34.68 Aligned_cols=83 Identities=14% Similarity=0.033 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
...+....+-...++.+.+..++.-+--+.|. ..+-..-+.++...|++.+|+.+|+.+....|..+..--.++.++..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44667777778889999999999988889999 56666777888899999999999999988888777777777777766
Q ss_pred hcch
Q 036703 100 MGEV 103 (365)
Q Consensus 100 ~~~~ 103 (365)
.|+.
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 6653
No 326
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.41 E-value=1.3 Score=36.78 Aligned_cols=186 Identities=12% Similarity=-0.053 Sum_probs=116.3
Q ss_pred ccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH-HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 036703 141 NCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK-QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER 219 (365)
Q Consensus 141 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~ 219 (365)
..+++..+...+..+-..... .....++..+. ..|.... ..+|...|+.+. ...++...+.++.++..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~----~a~~~l~~~y~~g~gv~~~-----~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~ 121 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA----AALALLGQMYGAGKGVSRD-----KTKAADWYRCAA--ADGLAEALFNLGLMYAN 121 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh----HHHHHHHHHHHhccCcccc-----HHHHHHHHHHHh--hcccHHHHHhHHHHHhc
Confidence 456778888888877652211 12222222222 2222221 346888888444 45677888889998876
Q ss_pred ----hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc------cCChhHHHHHHHHHHhccccCCCcch
Q 036703 220 ----VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD------AGDLERTRDVYRTLFIFYFSFSPRME 289 (365)
Q Consensus 220 ----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~~~~a~~~~~~~~~~~~ 289 (365)
..+..+|...|+++........ ......++.++... ..+...|...|.++-...
T Consensus 122 G~gv~~d~~~A~~~~~~Aa~~g~~~a--------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------- 185 (292)
T COG0790 122 GRGVPLDLVKALKYYEKAAKLGNVEA--------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------- 185 (292)
T ss_pred CCCcccCHHHHHHHHHHHHHcCChhH--------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------
Confidence 3489999999999988744331 01233444444211 113347888888887763
Q ss_pred hHHHHHHHHHHHHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc---------------chhHHHHHHHH
Q 036703 290 ERRIFKKYIEMELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD---------------ETERARAIFEL 350 (365)
Q Consensus 290 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---------------~~~~A~~~~~~ 350 (365)
.+.....++.+|.. ..++.+|..+|.++-+... ...+..++ ++...| +...|...+..
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~ 262 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK 262 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence 24445566666643 3478999999999998875 66777777 555444 77788888888
Q ss_pred HhcCcC
Q 036703 351 AIAQPI 356 (365)
Q Consensus 351 a~~~~~ 356 (365)
+....+
T Consensus 263 ~~~~~~ 268 (292)
T COG0790 263 ACELGF 268 (292)
T ss_pred HHHcCC
Confidence 776655
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.29 E-value=0.45 Score=36.28 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHhccHHHHHHHHHHHHHh-CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc
Q 036703 63 KLRYNEVQRARHIFERLVQC-HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN 141 (365)
Q Consensus 63 ~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (365)
.+..-.-+.|...|-++-.. .-+++++...+|.+|. ..+.++++.++.++++. .+.++.-++.++..++.++. +
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l-~~~~~~~n~eil~sLas~~~---~ 190 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALEL-SNPDDNFNPEILKSLASIYQ---K 190 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHH---H
Confidence 33442335666666554332 2257899999999988 56789999999999998 66543455899999999999 9
Q ss_pred cchhHHHH
Q 036703 142 CKETDRAR 149 (365)
Q Consensus 142 ~~~~~~A~ 149 (365)
+|+++.|-
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99988874
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.16 E-value=2.5 Score=38.72 Aligned_cols=253 Identities=12% Similarity=-0.013 Sum_probs=131.1
Q ss_pred ChhhHHHHHHHHHHh-----CCCchHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhhCCChHHHHHHHHHHHHh---c
Q 036703 1 FIDHGRNAWDRVVTL-----SPRVDQLWNNYIRMEENLG-----NVAGARQIFERWMHWMPDHEGWLSYIKFKLRY---N 67 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~ 67 (365)
|++.|+..|+.+... .-..+.+...+|.+|.+.. +...|..+|.++-.... +..-..++.++... .
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~ 342 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKER 342 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccc
Confidence 456777777777651 1113446777788877743 55668888888766433 23334455554433 3
Q ss_pred cHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703 68 EVQRARHIFERLVQCHPYNLSAWINFADFEMKM----GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK 143 (365)
Q Consensus 68 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (365)
|+..|...|..|.... +..+.+.++.++..- .+...|...|.++.+. .+ +.+...++.++.. ..+
T Consensus 343 d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-g~------~~A~~~~~~~~~~--g~~ 411 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-GN------PSAAYLLGAFYEY--GVG 411 (552)
T ss_pred cHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-cC------hhhHHHHHHHHHH--ccc
Confidence 5678888888776554 456666667666642 3677888888888877 42 3333444444431 125
Q ss_pred hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---
Q 036703 144 ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV--- 220 (365)
Q Consensus 144 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~--- 220 (365)
.++.+.-.+......--........................ .....+...+.++.. ..+..+...+++.+...
T Consensus 412 ~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~ 487 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVI--STLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGT 487 (552)
T ss_pred cccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccc--cchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCC
Confidence 55544444433322111110000111000000000000000 011234444444433 35667777777776543
Q ss_pred -CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC--hhHHHHHHHHHHhcc
Q 036703 221 -GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD--LERTRDVYRTLFIFY 281 (365)
Q Consensus 221 -~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~ 281 (365)
.+++.|...|.++.... .. ...+.+.++|...|- ...|..++.++....
T Consensus 488 ~~d~~~a~~~y~~a~~~~-~~-----------~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 488 GRDPEKAAAQYARASEQG-AQ-----------ALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred CCChHHHHHHHHHHHHhh-hH-----------HHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 36888888888887766 21 233344444433332 366666676666643
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.99 E-value=0.3 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=12.9
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCcchH
Q 036703 60 IKFKLRYNEVQRARHIFERLVQCHPYNLS 88 (365)
Q Consensus 60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 88 (365)
+-.+.+.|++++|+...+.+++..|++..
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 33344445555555555555555554443
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.97 E-value=0.62 Score=32.85 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 86 NLSAWINFADFEMKMG---EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
+....+.++-.+.+.. +..+.+.+++..++...|.. .....+.++--+. +.++|++++.+.+..++..|++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~---rRe~lyYLAvg~y---RlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER---RRECLYYLAVGHY---RLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc---chhhhhhhHHHHH---HHhhHHHHHHHHHHHHhhCCCc
Confidence 5666677777776654 45677888888886304432 3445555666677 8899999999999999988887
Q ss_pred hhHHHHHHH
Q 036703 163 RAEDLYRKF 171 (365)
Q Consensus 163 ~~~~~~~~~ 171 (365)
..+......
T Consensus 105 ~Qa~~Lk~~ 113 (149)
T KOG3364|consen 105 RQALELKET 113 (149)
T ss_pred HHHHHHHHH
Confidence 644443333
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.97 E-value=2 Score=37.98 Aligned_cols=19 Identities=26% Similarity=0.069 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChhHHHH
Q 036703 23 WNNYIRMEENLGNVAGARQ 41 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~ 41 (365)
....+.++.++|.++.|.+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~ 316 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQ 316 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHh
Confidence 5566677777776666655
No 332
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.90 E-value=2.9 Score=38.00 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=38.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 214 IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
.++....++|.+|..+-++--+..|+ +++-+++|+ ....++++|.+.|-+|=+.
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~~d------------Vy~pyaqwL-AE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFKDD------------VYMPYAQWL-AENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccccc------------ccchHHHHh-hhhhhHHHHHHHHHHhcch
Confidence 34456678999998887775444444 777888887 4778888888888776443
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.84 E-value=1 Score=34.46 Aligned_cols=71 Identities=13% Similarity=0.092 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc----chHHHHHHHHHHHhhcchHHHH
Q 036703 35 NVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY----NLSAWINFADFEMKMGEVDRAR 107 (365)
Q Consensus 35 ~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~A~ 107 (365)
+-+.|++.|-++- -.|. +.+...+|.+|. ..|.++++.++.++++..+. +++++..++.++.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3467887776553 3344 677788888887 55789999999999997543 5899999999999999998873
No 334
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=94.78 E-value=1.7 Score=36.01 Aligned_cols=158 Identities=15% Similarity=-0.012 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------------------------CCHHHHHHHHHHHHhcCCCch
Q 036703 188 IAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV--------------------------GNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 188 ~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~--------------------------~~~~~A~~~~~~~~~~~p~~~ 241 (365)
+-.+++.+=.-...+.|..+++.-..+.+.... +-.+++..++.+++......+
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGP 290 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGP 290 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCCh
Confidence 344677776777788999988876666554332 124566777777776643322
Q ss_pred hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh-
Q 036703 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW- 320 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 320 (365)
.....-+ .-..+.......-+......+|.-..... |+|.+-.+-+....+......+....+.....
T Consensus 291 --YqlqAAI--aa~HA~a~~aedtDW~~I~aLYdaL~~~a-------pSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~ 359 (415)
T COG4941 291 --YQLQAAI--AALHARARRAEDTDWPAIDALYDALEQAA-------PSPVVTLNRAVALAMREGPAAGLAMVEALLARP 359 (415)
T ss_pred --HHHHHHH--HHHHHhhcccCCCChHHHHHHHHHHHHhC-------CCCeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence 1101001 11111111012345666667777776666 44444344444444444566667776666544
Q ss_pred -CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 321 -SPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 321 -~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
-......+...+.++.+.|..++|+..|++++.+.+
T Consensus 360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~ 396 (415)
T COG4941 360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR 396 (415)
T ss_pred ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence 223556777888999999999999999999988876
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.70 E-value=1.2 Score=38.82 Aligned_cols=123 Identities=11% Similarity=-0.062 Sum_probs=82.0
Q ss_pred hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHH
Q 036703 32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVY 110 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 110 (365)
..|++..|-+-...+++..|. +..-...+.+....|+|+.+...+.-+-..-.....+...+..-....|++++|...-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 457777777777777777776 5555566677777888888887776555444433444444445556677788777777
Q ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
+-++.. .-.+ +++...-+.... ..|-++++....++.+...|..
T Consensus 381 ~~~l~~-eie~----~ei~~iaa~sa~---~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 381 EMMLSN-EIED----EEVLTVAAGSAD---ALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHhcc-ccCC----hhheeeecccHH---HHhHHHHHHHHHHHHhccCChh
Confidence 666655 3222 555555555555 6788899999999998887764
No 336
>PF12854 PPR_1: PPR repeat
Probab=94.62 E-value=0.084 Score=27.27 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=6.5
Q ss_pred HHHHHHHHhcCChhHHHH
Q 036703 24 NNYIRMEENLGNVAGARQ 41 (365)
Q Consensus 24 ~~~~~~~~~~g~~~~A~~ 41 (365)
..+...+.+.|++++|.+
T Consensus 11 ~~lI~~~Ck~G~~~~A~~ 28 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFE 28 (34)
T ss_pred HHHHHHHHHCCCHHHHHH
Confidence 333333333333333333
No 337
>PF12854 PPR_1: PPR repeat
Probab=94.45 E-value=0.086 Score=27.21 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHhhcchHHHHHHHHH
Q 036703 86 NLSAWINFADFEMKMGEVDRARNVYEC 112 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~ 112 (365)
|..+|..+...+.+.|+.++|.++|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455555555555555555555555554
No 338
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.44 E-value=1.1 Score=30.91 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=58.5
Q ss_pred HhccHHHHHHHHHHHHHhCCc------------chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHH
Q 036703 65 RYNEVQRARHIFERLVQCHPY------------NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLF 129 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~ 129 (365)
.-|-+++|..-+++++....+ +.-.+-.++..+...|++++++..-++++.. +... +.+....|
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y-FNRRGEL~qdeGklW 99 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY-FNRRGELHQDEGKLW 99 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHH--TTSTHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HhhccccccccchhH
Confidence 446677777778777764322 3445666777788889998888887777765 3211 23335666
Q ss_pred H----HHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 130 V----AFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 130 ~----~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
+ ..+..+. ..|+.++|+..|+.+-+
T Consensus 100 IaaVfsra~Al~---~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 100 IAAVFSRAVALE---GLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHH---HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hcCChHHHHHHHHHHHH
Confidence 5 4556667 88999999999998754
No 339
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=3.5 Score=36.86 Aligned_cols=161 Identities=15% Similarity=0.100 Sum_probs=100.0
Q ss_pred hccHHHHHHHHHHHHH------------hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh----------------
Q 036703 66 YNEVQRARHIFERLVQ------------CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF---------------- 117 (365)
Q Consensus 66 ~~~~~~A~~~~~~~l~------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---------------- 117 (365)
.+.|++|...|.-++. ..|.+....+.++.+...+|+.+.|..+.++++=..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3467888888887766 356677889999999999999999888888877541
Q ss_pred hcCChhhHHHHH---HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH-HHcCCchhhhHHHHHHHH
Q 036703 118 LADDHDEAEQLF---VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE-KQYGDREGIEDAIAGKMR 193 (365)
Q Consensus 118 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~ 193 (365)
.|-.++.....+ ..+..... +.|-+..|.++.+-.++..|..+ +.....+++++ .+..++.- -+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~---~RGC~rTA~E~cKlllsLdp~eD-Pl~~l~~ID~~ALrareYqw--------iI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLA---QRGCWRTALEWCKLLLSLDPSED-PLGILYLIDIYALRAREYQW--------II 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHH---hcCChHHHHHHHHHHhhcCCcCC-chhHHHHHHHHHHHHHhHHH--------HH
Confidence 010012223333 34445556 88999999999999999999843 22222233332 22223221 22
Q ss_pred HHHHHH-----HHcCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCC
Q 036703 194 LQYEDG-----VRKNPMNYDTWFDYIRLEERVGN---QERVREVYERAIANVPP 239 (365)
Q Consensus 194 ~~~~~~-----l~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~p~ 239 (365)
..++.. +...|+- .--..++.++..... -..|...+.+|++..|.
T Consensus 399 ~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 222222 2334443 222345555555444 67799999999999886
No 340
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.39 E-value=0.35 Score=39.22 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+...++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|+++-+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 44556677778899999999999999999999999999999999999999999999988764
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.32 E-value=0.96 Score=32.62 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 56 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
....+..-...++++.+..++..+--..|+.+.+-+.-+-+++..|++.+|+.++.+..+. .+.
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-~~~ 76 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS-AGA 76 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-CCC
Confidence 3444444556788899999998888899988888888888999999999999999988877 544
No 342
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.23 E-value=0.49 Score=38.43 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA 353 (365)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 353 (365)
.++..++..+...|+++.+.+.+++.+..+|-+-.+|..+...+...|+...|+..|+++-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34566777777888899999999999999999999999999999999999999888887765
No 343
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=3.9 Score=36.31 Aligned_cols=249 Identities=13% Similarity=0.121 Sum_probs=129.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
.+.........|+++......+..+...|+.+.|+..++..+. +. .-.....+-.+.-+.++.+|-..+....
T Consensus 253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445555667888888888889999999998889999988887 43 2233344555555668888888888888
Q ss_pred HhCCcchHHHHHHHH-HHH-------h-hcchHHHHHHHHHHHhhh--hcCChhhHHHHHHHHHHHHHhccccchhHHHH
Q 036703 81 QCHPYNLSAWINFAD-FEM-------K-MGEVDRARNVYECAVEIF--LADDHDEAEQLFVAFAKFEEMGCNCKETDRAR 149 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~-~~~-------~-~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 149 (365)
..+.-+...+..++- ++. . .|+.++|..+++...... .|.+-|..... ..+|.
T Consensus 331 desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~----------------~RKve 394 (546)
T KOG3783|consen 331 DESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI----------------VRKVE 394 (546)
T ss_pred hhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH----------------HHHHH
Confidence 877766655555552 221 1 234444444444333320 11110000111 11111
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHcCC--chhhhHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhCCHHHH
Q 036703 150 CIYKFALDRIPKGRAEDLYRKFLAFEKQYGD--REGIEDAIAGKMRLQYEDGVRKNPMNYD-TWFDYIRLEERVGNQERV 226 (365)
Q Consensus 150 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~A 226 (365)
+.-.+.- ..+......-+..++.++..... ..+. .+....++.--..++++.- -.+.+|.++...|+...|
T Consensus 395 rf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l-----~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a 468 (546)
T KOG3783|consen 395 RFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNEL-----EKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVA 468 (546)
T ss_pred HHhcccc-ccccccccchHHHHHHHHhhcccCChhhH-----HHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 1111110 00110001112223333322221 1111 1122222111111222222 346678888999999999
Q ss_pred HHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC-hhHHHHHHHHHHhcc
Q 036703 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-LERTRDVYRTLFIFY 281 (365)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~~~~ 281 (365)
..+|..+++....... ..|- +....+.+|.++. ..+. ..+++.++.+|-...
T Consensus 469 ~~~f~i~~~~e~~~~~-d~w~-~PfA~YElA~l~~-~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 469 PKCFKIQVEKESKRTE-DLWA-VPFALYELALLYW-DLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHhhcc-cccc-ccHHHHHHHHHHH-hcccChHHHHHHHHHHHhhc
Confidence 9999998854111000 0010 1346667777773 5555 899999999988764
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.13 E-value=5.4 Score=37.80 Aligned_cols=250 Identities=12% Similarity=0.009 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--c---h----HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh-
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPY--N---L----SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD- 123 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~---~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~- 123 (365)
..-+..+-......++.+|..++.++-..-|. . . ..--..+.+....|+++.|.++.+.++.. .|.+..
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-L~~~~~~ 494 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-LPEAAYR 494 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cccccch
Confidence 33444555556778889999998887765442 1 1 22223355666789999999999999999 776511
Q ss_pred hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc--hhHHHHHHH--HHHHHHcCCchhhhHHHHHHHHHHHHHH
Q 036703 124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG--RAEDLYRKF--LAFEKQYGDREGIEDAIAGKMRLQYEDG 199 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 199 (365)
....+....+.... -.|++++|+.+..++.+..... ....+|..+ ..+....|.....+. ...-..++.+-
T Consensus 495 ~r~~~~sv~~~a~~---~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~--~~~~~~~~~q~ 569 (894)
T COG2909 495 SRIVALSVLGEAAH---IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ--EKAFNLIREQH 569 (894)
T ss_pred hhhhhhhhhhHHHH---HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHH
Confidence 12345566777777 8999999999999887753222 134455555 334455662221110 01112233444
Q ss_pred HHcCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH
Q 036703 200 VRKNPMNYDTWFDYIRLEERV----GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR 275 (365)
Q Consensus 200 l~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 275 (365)
+...|.+.-.....+.++... +...+++.-++-.....|..... ....+.++.++ ...|+.++|...+.
T Consensus 570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~------~~~~~~LA~l~-~~~Gdl~~A~~~l~ 642 (894)
T COG2909 570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS------RLALSMLAELE-FLRGDLDKALAQLD 642 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH------HHHHHHHHHHH-HhcCCHHHHHHHHH
Confidence 455555544444444443222 33334444444443444443221 11224567775 68999999999998
Q ss_pred HHHhccccCC--CcchhHHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703 276 TLFIFYFSFS--PRMEERRIFKKYIEMELCLGNIDPCRKLYEKY 317 (365)
Q Consensus 276 ~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 317 (365)
.......... ..|+ ......-..+-...|+...|.....+.
T Consensus 643 ~~~~l~~~~~~~~~~~-a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 643 ELERLLLNGQYHVDYL-AAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHhcCCCCCchHH-HHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 8877632211 1110 111111111122568888888777763
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.85 E-value=0.18 Score=27.21 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036703 22 LWNNYIRMEENLGNVAGARQIFERWMH 48 (365)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~~~~al~ 48 (365)
++..+|.++...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666666654
No 346
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.75 E-value=0.19 Score=27.08 Aligned_cols=29 Identities=34% Similarity=0.320 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 88 SAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
.++..+|.++...|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778889999999999999999998876
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.49 E-value=0.32 Score=39.15 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
+...+..|...|.+.+|..+.++++..+|=+...|..+.+.+...||.-.+.+.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455667789999999999999999999999999999999999999888877777653
No 348
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=3.5 Score=37.00 Aligned_cols=113 Identities=13% Similarity=-0.070 Sum_probs=78.4
Q ss_pred HHHHHHHhCCCchHHHHHH--HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHH-HHHHHhC
Q 036703 8 AWDRVVTLSPRVDQLWNNY--IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIF-ERLVQCH 83 (365)
Q Consensus 8 ~~~~~l~~~p~~~~~~~~~--~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~-~~~l~~~ 83 (365)
.+...+..+|.++.+.... .-.+...+....+.-.+..++..+|+ ......++......|....+...+ +.+....
T Consensus 53 a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~ 132 (620)
T COG3914 53 ALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLS 132 (620)
T ss_pred HHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 3344445567777664443 55566678877888888888998888 567777776655555555544444 4477788
Q ss_pred CcchHHHHHH------HHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 84 PYNLSAWINF------ADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 84 p~~~~~~~~~------~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
|++....... +++....|+..++....+++... .|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~-~p~~ 175 (620)
T COG3914 133 PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL-LPKY 175 (620)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-hhhh
Confidence 8776665555 77777778888888888888888 7765
No 349
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.16 E-value=0.76 Score=30.53 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=35.7
Q ss_pred HHhccHHHHHHHHHHHHHhCCc---------chHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 64 LRYNEVQRARHIFERLVQCHPY---------NLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 64 ~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
.+.||+..|.+.+.+.+..... -......++.+....|++++|...++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556677776666665543221 1244566778888888888888888888887
No 350
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.03 E-value=4.5 Score=33.54 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=63.8
Q ss_pred HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC-------------------hhh
Q 036703 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD-------------------HDE 124 (365)
Q Consensus 64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------~~~ 124 (365)
.+..+..+-++.-..+++++|....++..++.-.. ....+|.++++++++. .... .+.
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka-~e~~yr~sqq~qh~~~~~da~~rRDt 271 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKA-GETIYRQSQQCQHQSPQHEAQLRRDT 271 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHH-HHHHHhhHHHHhhhccchhhhhhccc
Confidence 34445555566666778888877777777665333 3456777777777765 1110 001
Q ss_pred HHHHH--HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 036703 125 AEQLF--VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA 173 (365)
Q Consensus 125 ~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 173 (365)
...++ ..++.+.. ++|+..+|.+.++...+..|-.....+...+++
T Consensus 272 nvl~YIKRRLAMCAR---klGrlrEA~K~~RDL~ke~pl~t~lniheNLiE 319 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCAR---KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLE 319 (556)
T ss_pred chhhHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 11222 34566777 899999999999999888775433334444433
No 351
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.03 E-value=0.66 Score=40.74 Aligned_cols=86 Identities=13% Similarity=0.020 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHH
Q 036703 34 GNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY---NEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNV 109 (365)
Q Consensus 34 g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 109 (365)
+....|+..|.+++...|. ...+...+.++.+. |+.-.|+.-.-.++..+|....+|..++.++...+++.+|+.+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3445566666666666666 44445555554443 3444455555556666666666666666666666666666666
Q ss_pred HHHHHhhhhcC
Q 036703 110 YECAVEIFLAD 120 (365)
Q Consensus 110 ~~~a~~~~~~~ 120 (365)
...+... +|.
T Consensus 468 ~~alq~~-~Pt 477 (758)
T KOG1310|consen 468 HWALQMS-FPT 477 (758)
T ss_pred HHHHhhc-Cch
Confidence 6655555 554
No 352
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=0.84 Score=41.10 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHH
Q 036703 252 LWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330 (365)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 330 (365)
+|...+.. ++.++|..+.+.|...+...+.+..- .+ ......+.-+|.+..+.++|.++++.|-+.+|.++---..
T Consensus 357 LWn~A~~~--F~~~~Y~~s~~~y~~Sl~~i~~D~~~-~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 357 LWNTAKKL--FKMEKYVVSIRFYKLSLKDIISDNYS-DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHhhHHH--HHHHHHHHHHHHHHHHHHhccchhhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 56666655 37789999999999999876443211 11 5677888889999999999999999999999999887777
Q ss_pred HHHHHhhccchhHHHHHHHHHhcC
Q 036703 331 YTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 331 ~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
........|+-++|..+.......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 777777889999998887766544
No 353
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=1.6 Score=39.49 Aligned_cols=95 Identities=6% Similarity=0.031 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF 93 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 93 (365)
.+|.. |.-..+..++..+++.|+..+..-|. ......++.+|....+.++|.++++.|-+.+|.++-.-...
T Consensus 356 iLWn~-A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNT-AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHh-hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34544 33445567799999999999987776 34566778889999999999999999999999998888888
Q ss_pred HHHHHhhcchHHHHHHHHHHHhh
Q 036703 94 ADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
.......|..++|+.+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88888889999999998887766
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.89 E-value=0.19 Score=23.96 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 036703 22 LWNNYIRMEENLGNVAGARQIFE 44 (365)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~~~ 44 (365)
+...+|..+...|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666666554
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.76 E-value=2.5 Score=29.93 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcC---ChhHHHHHHHHHHh-hCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703 21 QLWNNYIRMEENLG---NVAGARQIFERWMH-WMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA 89 (365)
Q Consensus 21 ~~~~~~~~~~~~~g---~~~~A~~~~~~al~-~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 89 (365)
...+.++..+.... +..+.+.+++..++ -+|+ ....+.++--+.+.++|+.++.+.+..++..|++.++
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 33444444444433 23345555555554 3444 2233333444455555666666666555555555443
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.47 E-value=7.3 Score=34.53 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703 166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 236 (365)
..|..++......|+.+ .|..+|+++- -+..+.-++...|+.+.-.++...+...
T Consensus 348 ~~W~~Lg~~AL~~g~~~--------lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIE--------LAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHHHHTTBHH--------HHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHH--------HHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 45555555555555533 3444444321 1233344445556655555555554443
No 357
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.28 E-value=0.38 Score=25.54 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHW 49 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 49 (365)
+++..+|.+....+++++|..-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666666666666666666666653
No 358
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.25 E-value=2.8 Score=41.31 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=101.2
Q ss_pred HHHHHHHHH-HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh-------CCC--hHHHHHHHHHHHHhccHHHHHH
Q 036703 5 GRNAWDRVV-TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW-------MPD--HEGWLSYIKFKLRYNEVQRARH 74 (365)
Q Consensus 5 A~~~~~~~l-~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~--~~~~~~~~~~~~~~~~~~~A~~ 74 (365)
+..++.+.. ..+|.....+..++.++...|+.++|+..-.++.-+ ++. ...+..++.++...++...|..
T Consensus 957 slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~ 1036 (1236)
T KOG1839|consen 957 SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALK 1036 (1236)
T ss_pred hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhh
Confidence 334666444 348888999999999999999999999877666532 222 3456667777777888888999
Q ss_pred HHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC----hhhHHHHHHHHHHHHHhcccc
Q 036703 75 IFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD----HDEAEQLFVAFAKFEEMGCNC 142 (365)
Q Consensus 75 ~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 142 (365)
.+.++... .|....+...+..++...++++.|.++.+.|+.. .-.- .-.....+..+++... ..
T Consensus 1037 ~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~-~~~v~g~~~l~~~~~~~~~a~l~~---s~ 1112 (1236)
T KOG1839|consen 1037 SLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK-NKKVLGPKELETALSYHALARLFE---SM 1112 (1236)
T ss_pred hHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH-HhhhcCccchhhhhHHHHHHHHHh---hh
Confidence 88888762 5655667788888888889999999999999876 3211 1222344445555555 55
Q ss_pred chhHHHHHHHHH
Q 036703 143 KETDRARCIYKF 154 (365)
Q Consensus 143 ~~~~~A~~~~~~ 154 (365)
+++..|....+.
T Consensus 1113 ~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1113 KDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHHHhh
Confidence 555555554443
No 359
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.19 E-value=1.1 Score=39.01 Aligned_cols=116 Identities=8% Similarity=-0.063 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703 5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCH 83 (365)
Q Consensus 5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 83 (365)
|-.-...+++..|..+..-...+.+....|+++.+.+.+..+-..-.+ ..+...+..-....|+.+.|...-.-++...
T Consensus 308 as~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 308 ASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence 445556678888999999999999999999999999888766544333 4444455556667788999999888888877
Q ss_pred CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
-.++++..-.+-.....|-++++...+++.+.. .|..
T Consensus 388 ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~-~~~~ 424 (831)
T PRK15180 388 IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL-NPET 424 (831)
T ss_pred cCChhheeeecccHHHHhHHHHHHHHHHHHhcc-CChh
Confidence 777777766666666788899999999999888 6654
No 360
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.17 E-value=1.5 Score=30.99 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 297 YIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 297 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
..+.....|+-++-.+++....+....++.+...++..|.+.|+..++.+++.+|.+..
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33445567777777777777775555589999999999999999999999999998754
No 361
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.01 E-value=2.9 Score=28.87 Aligned_cols=69 Identities=10% Similarity=0.149 Sum_probs=41.2
Q ss_pred HHHHHHHH--HHHhCCHHHHHHHHHHHHhc---CCCchh--hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 209 TWFDYIRL--EERVGNQERVREVYERAIAN---VPPAEE--KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 209 ~~~~~~~~--~~~~~~~~~A~~~~~~~~~~---~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
++..+++. ....|-+++|...+.+++.. .|.... ..-|..++..++.-+ + ...|++++++..-.+++..
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A--~-~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGA--L-AGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHH--H-HHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHH--H-HhhccHHHHHHHHHHHHHH
Confidence 44555444 34568899999999998865 454321 122334444444433 3 3789999988888877765
No 362
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.00 E-value=0.64 Score=30.89 Aligned_cols=61 Identities=8% Similarity=0.114 Sum_probs=45.5
Q ss_pred HHhhcchHHHHHHHHHHHhhhhcCChh-----hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 97 EMKMGEVDRARNVYECAVEIFLADDHD-----EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
..+.|++..|.+.+.+.... ...... ........++.++. ..|++++|...++++++....
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~-~~~~~~~~~~~~~~~all~lA~~~~---~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDY-AKQSNNSSSNSGLAYALLNLAELHR---RFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHH-HhhcccchhhHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHH
Confidence 34678999998888888776 433211 22456777888899 999999999999999986443
No 363
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=4 Score=36.63 Aligned_cols=133 Identities=11% Similarity=-0.009 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHH--HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhH
Q 036703 192 MRLQYEDGVRKNPMNYDTWFDY--IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269 (365)
Q Consensus 192 a~~~~~~~l~~~p~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (365)
+...+...+..+|.++.+.... .-.+...++...+...+..++..+|.+.. ...+++...+...+....
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCP---------AVQNLAAALELDGLQFLA 120 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccch---------HHHHHHHHHHHhhhHHHH
Confidence 4455555566788888775554 44556678888888889999999988743 556666665543444444
Q ss_pred HHHHHHHHHhccccCCCcc-hhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHH
Q 036703 270 TRDVYRTLFIFYFSFSPRM-EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTEL 334 (365)
Q Consensus 270 a~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 334 (365)
+...-+.+....|...... +.+..+. ++......|+..++....+++....|.++.+...+...
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 5555555666654332221 1133333 67777788999999999999999998887665555443
No 364
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.69 E-value=0.87 Score=23.84 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCChhHHHHH
Q 036703 22 LWNNYIRMEENLGNVAGARQI 42 (365)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~ 42 (365)
.|.++|-.+...|++++|+.+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 455555555555556666555
No 365
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.53 E-value=1 Score=23.56 Aligned_cols=30 Identities=10% Similarity=-0.013 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhccHHHHHHH--HHHHHHhCC
Q 036703 55 GWLSYIKFKLRYNEVQRARHI--FERLVQCHP 84 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~--~~~~l~~~p 84 (365)
.|..+|-.+...|++++|+.+ |+-+...+|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 345555555555666666666 324444444
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.50 E-value=1.1 Score=36.16 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=50.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 58 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
..+..+...|.+.+|.++.++++..+|-+...|..+..++...|+--.|.+.|++.-+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 34567778899999999999999999999999999999999999988888888877655
No 367
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.27 E-value=3.6 Score=29.65 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhc
Q 036703 5 GRNAWDRVVTLSPRVDQLWNNYIRMEENL 33 (365)
Q Consensus 5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 33 (365)
....++.++..+|.++.....++.++...
T Consensus 26 l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 26 LIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 34445555554444455555555555443
No 368
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.07 E-value=1.1 Score=39.53 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhc---CChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENL---GNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~---g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
..|+..|.+++...|.....+...+..+++. |+.-.|+.-...+++++|. ..+|..++++....+.+.+|++....
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 4678899999999999999999999888875 6777899999999999999 78999999999999999999999888
Q ss_pred HHHhCCcch
Q 036703 79 LVQCHPYNL 87 (365)
Q Consensus 79 ~l~~~p~~~ 87 (365)
+....|.+.
T Consensus 471 lq~~~Ptd~ 479 (758)
T KOG1310|consen 471 LQMSFPTDV 479 (758)
T ss_pred HhhcCchhh
Confidence 877888544
No 369
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.06 E-value=4.6 Score=29.29 Aligned_cols=79 Identities=10% Similarity=-0.046 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG 101 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 101 (365)
.+.....-...++++.+..++..+--+.|+ ..+-..-+.++...|++.+|..+|+......+..+..--.++.++.-.|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 444555556688999999999888888898 4555556677888999999999999988877755544444444444444
No 370
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.06 E-value=0.4 Score=22.86 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHH
Q 036703 90 WINFADFEMKMGEVDRARNVYE 111 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~A~~~~~ 111 (365)
...++..+...|+.++|+..++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555555555555555443
No 371
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=90.86 E-value=1.3 Score=31.37 Aligned_cols=39 Identities=8% Similarity=0.040 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCcccc
Q 036703 326 YAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLW 364 (365)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~~~ 364 (365)
.+....+..+...|++..|.++.+...+..|.+.|..+|
T Consensus 53 ~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W 91 (126)
T PF12921_consen 53 RLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFW 91 (126)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 344444444444445555555555444444444444444
No 372
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=90.80 E-value=0.43 Score=23.54 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=15.3
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhc
Q 036703 328 WSKYTELEKSLDETERARAIFELAIA 353 (365)
Q Consensus 328 ~~~~~~~~~~~g~~~~A~~~~~~a~~ 353 (365)
|..+...+.+.|+.++|.++|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555566666666666666665543
No 373
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=90.47 E-value=0.54 Score=23.15 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=4.6
Q ss_pred HHhccHHHHHHHH
Q 036703 64 LRYNEVQRARHIF 76 (365)
Q Consensus 64 ~~~~~~~~A~~~~ 76 (365)
.+.|++++|..+|
T Consensus 11 ~~~~~~~~a~~~~ 23 (31)
T PF01535_consen 11 CKMGQFEEALEVF 23 (31)
T ss_pred HccchHHHHHHHH
Confidence 3333333333333
No 374
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.03 E-value=4.8 Score=34.42 Aligned_cols=92 Identities=9% Similarity=0.021 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------CCcc
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQC----------HPYN 86 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----------~p~~ 86 (365)
.++..++..|...|+++.|.+.|.|+-..+.+ ...|..+..+..-.|++.....+-.++.+. .|
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~-- 228 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP-- 228 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC--
Confidence 45677899999999999999999997776665 467888888888888887777777666554 22
Q ss_pred hHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703 87 LSAWINFADFEMKMGEVDRARNVYECAV 114 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 114 (365)
+.+...-|......+++..|.+.|-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2233333444444557777777766554
No 375
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.65 E-value=0.64 Score=24.67 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703 293 IFKKYIEMELCLGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 293 ~~~~~~~~~~~~~~~~~A~~~~~~al~~ 320 (365)
++..+|++....++|++|..-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5566777777777777777777777765
No 376
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.27 E-value=7.6 Score=29.08 Aligned_cols=119 Identities=8% Similarity=-0.065 Sum_probs=80.2
Q ss_pred HhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH-----HHHHHHHHhhcc
Q 036703 31 ENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW-----INFADFEMKMGE 102 (365)
Q Consensus 31 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-----~~~~~~~~~~~~ 102 (365)
.+.++.++|..-|...-+-.-. .-+....+.+....|+...|...|..+-...| .|.+. +.-+-++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhcccc
Confidence 3456677777777766543322 23445566777888999999999999887766 55444 344556777888
Q ss_pred hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
++......+-.-...+ +.....--.++..-. +.|++..|.+.|.+...
T Consensus 148 y~dV~srvepLa~d~n----~mR~sArEALglAa~---kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGN----PMRHSAREALGLAAY---KAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCC----hhHHHHHHHHhHHHH---hccchHHHHHHHHHHHc
Confidence 8876665554332212 223555566676667 89999999999998776
No 377
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.25 E-value=12 Score=31.15 Aligned_cols=168 Identities=12% Similarity=-0.008 Sum_probs=106.6
Q ss_pred hcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh----hcch
Q 036703 32 NLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR----YNEVQRARHIFERLVQCHPYNLSAWINFADFEMK----MGEV 103 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~ 103 (365)
..+++..|...+.++-.... ...-..++.++.. ..+..+|...|+.+ .....+.....+|.++.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~-~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD-AAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC-hHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCH
Confidence 34567778888877765211 2333444544443 34688899999844 444467788889998887 3488
Q ss_pred HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc-------chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703 104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC-------KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176 (365)
Q Consensus 104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 176 (365)
.+|...|.++.+. .... .......++.++. .- .+...|...|.++-..... .....++.++.
T Consensus 130 ~~A~~~~~~Aa~~-g~~~---a~~~~~~l~~~~~---~g~~~~~~~~~~~~A~~~~~~aa~~~~~----~a~~~lg~~y~ 198 (292)
T COG0790 130 VKALKYYEKAAKL-GNVE---AALAMYRLGLAYL---SGLQALAVAYDDKKALYLYRKAAELGNP----DAQLLLGRMYE 198 (292)
T ss_pred HHHHHHHHHHHHc-CChh---HHHHHHHHHHHHH---cChhhhcccHHHHhHHHHHHHHHHhcCH----HHHHHHHHHHH
Confidence 9999999999988 3221 0233666677666 32 1344799999988775432 33344443332
Q ss_pred -HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 036703 177 -QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG 221 (365)
Q Consensus 177 -~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 221 (365)
..|.... ..+|...|.++-+... ...++.++ ++...|
T Consensus 199 ~G~Gv~~d-----~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 199 KGLGVPRD-----LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred cCCCCCcC-----HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2342222 4479999999998766 77788888 555454
No 378
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.04 E-value=15 Score=32.19 Aligned_cols=129 Identities=13% Similarity=0.002 Sum_probs=88.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 26 YIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
-|-++.+++++.+|.++|.+..+...+ .++....+--..-.++.+.....+...-+..|.++.+-.-.+-...+
T Consensus 12 Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 12 QGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK 91 (549)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 466778899999999999999865443 12332322222235667777777777777888777777777888889
Q ss_pred hcchHHHHHHHHHHHhhhhcCC---------hhhHHHHHH--HHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 100 MGEVDRARNVYECAVEIFLADD---------HDEAEQLFV--AFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
.+.+.+|.+.+..--.. .... ..-....|+ ..+..+. ..|++.+++.++++.+..
T Consensus 92 ~k~~~kal~~ls~w~~~-~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLI---e~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQ-IKGTESPWLDTNIQQLFSDFFLDEIEAHSLI---ETGRFSEGRAILNRIIER 157 (549)
T ss_pred hhhHHHHHHHHHHHHhh-hcccccchhhhhHHHHhhHHHHHHHHHHHHH---hcCCcchHHHHHHHHHHH
Confidence 99999999888766554 2211 000122232 3456677 899999999999998864
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.82 E-value=0.88 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=12.4
Q ss_pred HHHHHHhhccchhHHHHHHHHHh
Q 036703 330 KYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 330 ~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
.++..|...|+.+.|+.+++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555555
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.81 E-value=4.1 Score=25.77 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=23.4
Q ss_pred hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHH
Q 036703 99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI 151 (365)
Q Consensus 99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 151 (365)
..++.++|+..++++++. .++. ++...++-.++..+. ..|++.+.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k-~~~~-~~rf~~lG~l~qA~~---e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK-ITDR-EDRFRVLGYLIQAHM---EWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhh-cCCh-HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 345555666666666665 5543 222333333334444 55555554444
No 381
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=5.1 Score=32.37 Aligned_cols=61 Identities=21% Similarity=0.093 Sum_probs=54.5
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
=..+...++.+.|..+.++.+..+|.++.-+..-|.+|.+.|-+..|++-++..++. .|++
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~-~P~~ 248 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH-CPDD 248 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh-CCCc
Confidence 355667788999999999999999999999999999999999999999999999998 8886
No 382
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.00 E-value=6.5 Score=31.78 Aligned_cols=61 Identities=13% Similarity=-0.071 Sum_probs=36.3
Q ss_pred HHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703 29 MEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA 89 (365)
Q Consensus 29 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 89 (365)
.+...++.+.|..+.++.+.++|+ +.-|.--|-+|.+.|.+..|++-++..++..|+++.+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 344455566666666666666665 4455555666666666666666666666666655444
No 383
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.91 E-value=13 Score=30.24 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcchH-HHHHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH
Q 036703 89 AWINFADFEMKMGEVD-RARNVYECAVEIFL--ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE 165 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 165 (365)
....++.+....+.-+ .-.++.+++++. . +.....++.++..+|..+. +.|++.+|+.+|-.+ ++...
T Consensus 51 ~~~rl~~l~~~~~~~~p~r~~fi~~ai~W-S~~~~~~~Gdp~LH~~~a~~~~---~e~~~~~A~~Hfl~~-----~~~~~ 121 (260)
T PF04190_consen 51 SIARLIELISLFPPEEPERKKFIKAAIKW-SKFGSYKFGDPELHHLLAEKLW---KEGNYYEAERHFLLG-----TDPSA 121 (260)
T ss_dssp HHHHHHHHHHHS-TT-TTHHHHHHHHHHH-HHTSS-TT--HHHHHHHHHHHH---HTT-HHHHHHHHHTS------HHHH
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHH-HccCCCCCCCHHHHHHHHHHHH---hhccHHHHHHHHHhc-----CChhH
Confidence 3344454444443222 234455555555 3 1112345899999999999 999999999887543 11111
Q ss_pred HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhc
Q 036703 166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRL-EERVGNQERVREVYERAIAN 236 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~ 236 (365)
.....+. +....+..|...+.+...+.+ +...++...|...+..-++.
T Consensus 122 ~~~~~ll-----------------------~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 122 FAYVMLL-----------------------EEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHH-----------------------HHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------------------HHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1111111 122223445556666666654 66788888888887766655
No 384
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.88 E-value=25 Score=33.41 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhh-CCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHW-MPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
..+...||..+.+.|++++|...|-+.+.. .|. .+ +.-+.......+-..+++...+..-.+..--..+..+|.
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-~V----i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYi 442 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-EV----IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-HH----HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHH
Confidence 456788999999999999999999888853 332 11 111222333444445555555544444444445555666
Q ss_pred hhcchHHHH
Q 036703 99 KMGEVDRAR 107 (365)
Q Consensus 99 ~~~~~~~A~ 107 (365)
+.++.++-.
T Consensus 443 Klkd~~kL~ 451 (933)
T KOG2114|consen 443 KLKDVEKLT 451 (933)
T ss_pred HhcchHHHH
Confidence 665544433
No 385
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.88 E-value=7.1 Score=30.45 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=47.9
Q ss_pred HHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 63 KLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 63 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
+.+.+..++|+...+.-++..|.+...-..+.+++.-.|++++|..-++-+-+. .|.. .....+|..+..+..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-~p~~-t~~a~lyr~lir~ea 83 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-SPQD-TVGASLYRHLIRCEA 83 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc-Cccc-chHHHHHHHHHHHHH
Confidence 445566777777777777777777777777777777777777777777777666 6654 333444544444443
No 386
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.86 E-value=19 Score=32.08 Aligned_cols=169 Identities=10% Similarity=0.064 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCH
Q 036703 144 ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQ 223 (365)
Q Consensus 144 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 223 (365)
...-...+..+.+....+ ...+...++.+...|+. +--.+.++.++.+-+++..-..++..|.. ++.
T Consensus 81 k~~~veh~c~~~l~~~e~---kmal~el~q~y~en~n~---------~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~ 147 (711)
T COG1747 81 KNQIVEHLCTRVLEYGES---KMALLELLQCYKENGNE---------QLYSLWERLVEYDFNDVVIGRELADKYEK-IKK 147 (711)
T ss_pred HHHHHHHHHHHHHHhcch---HHHHHHHHHHHHhcCch---------hhHHHHHHHHHhcchhHHHHHHHHHHHHH-hch
Confidence 334444555555554332 23455566666555443 24456777778777787777788888776 888
Q ss_pred HHHHHHHHHHHhcCCC-chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHH-HHH
Q 036703 224 ERVREVYERAIANVPP-AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYI-EME 301 (365)
Q Consensus 224 ~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~ 301 (365)
+++...|.+++...-+ ..... .-.+|-.+..+ -..+.+.-..+..+.-.... . ....+..... .-|
T Consensus 148 sk~a~~f~Ka~yrfI~~~q~~~----i~evWeKL~~~---i~dD~D~fl~l~~kiqt~lg---~--~~~~Vl~qdv~~~Y 215 (711)
T COG1747 148 SKAAEFFGKALYRFIPRRQNAA----IKEVWEKLPEL---IGDDKDFFLRLQKKIQTKLG---E--GRGSVLMQDVYKKY 215 (711)
T ss_pred hhHHHHHHHHHHHhcchhhhhh----HHHHHHHHHHh---ccccHHHHHHHHHHHHHhhc---c--chHHHHHHHHHHHh
Confidence 8999999999876433 11100 01244443322 23455555555444433221 0 1133333333 344
Q ss_pred HHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh
Q 036703 302 LCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS 337 (365)
Q Consensus 302 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 337 (365)
....++++|+.+....++.+..+..+.-.+...+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 567889999999999999988888777777766554
No 387
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.52 E-value=12 Score=32.30 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=68.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhCC-----------C------hHHH--HHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703 27 IRMEENLGNVAGARQIFERWMHWMP-----------D------HEGW--LSYIKFKLRYNEVQRARHIFERLVQCHPYNL 87 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~~p-----------~------~~~~--~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 87 (365)
|....+++++..|.--|..++++.. . ...| ..+.-+|.+.++.+-|+.---+.+..+|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4556677888888888888887532 2 1122 4567889999999999999999999999888
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703 88 SAWINFADFEMKMGEVDRARNVYECAV 114 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~ 114 (365)
.-++.-|.++....++.+|-+.+--+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999988888877655544
No 388
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=87.24 E-value=1.5 Score=22.10 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWM 47 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al 47 (365)
|..+...+.+.|++++|.++|.++.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555555555544
No 389
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=87.12 E-value=1.6 Score=22.02 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 56 WLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 56 ~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
|..+...+.+.|++++|..+|.++.+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555556666666666655543
No 390
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.69 E-value=4.2 Score=33.41 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh-CCChHHHHHHHHHHH
Q 036703 5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW-MPDHEGWLSYIKFKL 64 (365)
Q Consensus 5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~ 64 (365)
|+..|.+|..+.|.+...|..+|.+....|+.-.|+-.|-|++.. .|.+.+...+..+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 567788888888888888888888888888888888888777743 333444444444443
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.61 E-value=2.9 Score=32.23 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703 70 QRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
+...+..++.+...| ++.++..++.++...|+.++|.....++... +|.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l-yP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRL-YPA 176 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCc
Confidence 334445555556666 6666666666666666666666666666666 663
No 392
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.57 E-value=8.5 Score=31.10 Aligned_cols=79 Identities=9% Similarity=0.028 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------chHHHHHHHHHHHhhc
Q 036703 35 NVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY------NLSAWINFADFEMKMG 101 (365)
Q Consensus 35 ~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~ 101 (365)
.....+.++++|...... ..+-..+|..+...|++++|..+|+.+...... ...+...+..+....|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 344566777777754432 334556788888888999999998888654331 2455566667777777
Q ss_pred chHHHHHHHHHH
Q 036703 102 EVDRARNVYECA 113 (365)
Q Consensus 102 ~~~~A~~~~~~a 113 (365)
+.+..+.+.-++
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 777766654443
No 393
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.54 E-value=14 Score=28.96 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFK 63 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~ 63 (365)
+++|+...+.-++..|.+......|..++.-.|++++|..-++-+-++.|+ ..++..++.+.
T Consensus 17 L~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 467888888888899999999999999999999999999999999999988 34555555554
No 394
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.47 E-value=2 Score=23.71 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703 211 FDYIRLEERVGNQERVREVYERAIAN 236 (365)
Q Consensus 211 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 236 (365)
+.++..|...|+.+.|+.++++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46888999999999999999999954
No 395
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.36 E-value=36 Score=33.56 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=61.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHH----Hhc---cHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703 28 RMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKL----RYN---EVQRARHIFERLVQCHPYNLSAWINFADF 96 (365)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~----~~~---~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 96 (365)
+.+.....++.|...|.|.-...|. -++.+..|-... ..| .+++|..-|++.-. .|.-|--|..-|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH
Confidence 4555667788888888888888887 233333332222 223 45666666665432 34466677888888
Q ss_pred HHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 97 EMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
|.+.|++++-+++|.-|++. .|..
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~-~~~~ 585 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKR-YSQH 585 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHh-cCCC
Confidence 88888888888899888888 8875
No 396
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.71 E-value=6.3 Score=39.03 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=95.4
Q ss_pred HHHHHhcCChhHHHH------HHHH-HHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHHH
Q 036703 27 IRMEENLGNVAGARQ------IFER-WMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSAW 90 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~------~~~~-al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~ 90 (365)
+......|.+.+|.+ ++.+ .-.+.|+ ...+..++.++...|+.++|...-.++.-+ .|+....+
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 444555666666666 5542 2345666 678889999999999999999887766542 34556678
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhh---hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIF---LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
..++.++...++...|...+.++...- .+.++|....+..++..++. ..++++.|+++.+.|++.
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~---~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL---GVEEADTALRYLESALAK 1086 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999887751 23334555667778888888 889999999999999873
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.62 E-value=3.9 Score=31.49 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703 36 VAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY 85 (365)
Q Consensus 36 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 85 (365)
.+..++..++.++..|++..+..++..+...|+.++|.....++....|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34566777888888999999999999999999999999999999999993
No 398
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=85.20 E-value=3 Score=20.91 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 56 WLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 56 ~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
|..+...+.+.|+++.|..+|+.+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 399
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=85.15 E-value=3.1 Score=22.49 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=14.8
Q ss_pred HHHHHHhCCcchHHHHHHHHHHHhhcchH
Q 036703 76 FERLVQCHPYNLSAWINFADFEMKMGEVD 104 (365)
Q Consensus 76 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 104 (365)
|.+++-.+|++...+..+++++...|+..
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~ 33 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDPA 33 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCHH
Confidence 34445555555555555555555555543
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.70 E-value=7.4 Score=33.35 Aligned_cols=103 Identities=14% Similarity=0.022 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703 208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 287 (365)
.++..+++.|...|+.+.|.+.|.++..-+.+... .+.+|+++...- ...|++.....+..++.+.......+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------vInm~ln~i~VS-I~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------VINMCLNLILVS-IYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------HHHHHHHHHHHH-HhhcchhhhhhHHHHHHhCchhhhhH
Confidence 35667899999999999999999998777766543 267788877774 67888888888777777652000000
Q ss_pred chh--HHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703 288 MEE--RRIFKKYIEMELCLGNIDPCRKLYEKY 317 (365)
Q Consensus 288 ~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a 317 (365)
-+. +.+.+.-|......+++..|.+.|-.+
T Consensus 224 ~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 224 AQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 011 233444444455566888888777655
No 401
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=84.30 E-value=3.3 Score=20.75 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHW 49 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 49 (365)
..|..+...+.+.|+++.|..+|+.+.+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 36788899999999999999999988753
No 402
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=84.05 E-value=24 Score=29.56 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=71.6
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHH
Q 036703 92 NFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF 171 (365)
Q Consensus 92 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 171 (365)
.+.+...+..+...-++.-..+++. +|.- ..++..++.- ...-..+|.++|+++++..... +. -
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeI-N~eC----A~AyvLLAEE-----Ea~Ti~~AE~l~k~ALka~e~~-----yr-~ 252 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEI-NNEC----ATAYVLLAEE-----EATTIVDAERLFKQALKAGETI-----YR-Q 252 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc-Cchh----hhHHHhhhhh-----hhhhHHHHHHHHHHHHHHHHHH-----Hh-h
Confidence 3344444556667777777888888 7765 6666666543 3456788999999998753221 11 1
Q ss_pred HHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT--WFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
.+-...+|.. ++...+.+ .++.+ -..++.+..+.|+..+|.+.|+...+..|-.
T Consensus 253 sqq~qh~~~~--------------~da~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~ 308 (556)
T KOG3807|consen 253 SQQCQHQSPQ--------------HEAQLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL 308 (556)
T ss_pred HHHHhhhccc--------------hhhhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH
Confidence 1111122211 11111221 23333 3457788899999999999999999988854
No 403
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.97 E-value=32 Score=30.94 Aligned_cols=252 Identities=12% Similarity=0.024 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHH
Q 036703 70 QRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRAR 149 (365)
Q Consensus 70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 149 (365)
+...+.+.......|+++...+..+..+...|+.+.|...++..+.. .-.. -..-.+...+..+. .+.++.+|-
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~-~~kQ--~~~l~~fE~aw~~v---~~~~~~~aa 323 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPI-RMKQ--VKSLMVFERAWLSV---GQHQYSRAA 323 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccH-HHHH--HHHHHHHHHHHHHH---HHHHHHHHh
Confidence 45555666666788888888888899999989888888888887763 1110 11233445555555 667788888
Q ss_pred HHHHHHhccCCCchhHHHHHHHHH--HHH-------H-cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 036703 150 CIYKFALDRIPKGRAEDLYRKFLA--FEK-------Q-YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER 219 (365)
Q Consensus 150 ~~~~~~l~~~p~~~~~~~~~~~~~--~~~-------~-~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~ 219 (365)
..+....+....+. .++.|.. ++. . .|+.+. .. ...+.-+..+..-|++..+=..
T Consensus 324 d~~~~L~desdWS~---a~Y~Yfa~cc~l~~~~~~q~~~~ne~~-a~----~~~k~~~~l~~~a~K~~P~E~f------- 388 (546)
T KOG3783|consen 324 DSFDLLRDESDWSH---AFYTYFAGCCLLQNWEVNQGAGGNEEK-AQ----LYFKVGEELLANAGKNLPLEKF------- 388 (546)
T ss_pred hHHHHHHhhhhhhH---HHHHHHHHHHHhccHHHHHhcccchhH-HH----HHHHHHHHHHHhccccCchhHH-------
Confidence 88887776554432 2222211 111 1 111111 11 1111222222222222111000
Q ss_pred hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHH
Q 036703 220 VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKY 297 (365)
Q Consensus 220 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 297 (365)
-..+|.+.-.+.- ..+...-...+...+++|..+- ....++.. -+..... .|...+ ++ .-.+...
T Consensus 389 --~~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf~------~~s~~~l~-k~~~~~~-~~~~~d--~Dd~~lk~lL~ 455 (546)
T KOG3783|consen 389 --IVRKVERFVKRGP-LNASILLASPYYELAYFWNGFS------RMSKNELE-KMRAELE-NPKIDD--SDDEGLKYLLK 455 (546)
T ss_pred --HHHHHHHHhcccc-ccccccccchHHHHHHHHhhcc------cCChhhHH-HHHHHHh-ccCCCC--chHHHHHHHHH
Confidence 0111111111110 0001000000111234444432 22222222 1111111 121111 33 3334556
Q ss_pred HHHHHHhCCCccHHHHHHHHHhh------Ccc-hHHHHHHHHHHHhhccc-hhHHHHHHHHHhcCc
Q 036703 298 IEMELCLGNIDPCRKLYEKYLEW------SPE-NCYAWSKYTELEKSLDE-TERARAIFELAIAQP 355 (365)
Q Consensus 298 ~~~~~~~~~~~~A~~~~~~al~~------~p~-~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~ 355 (365)
|.+....|+...|..+|...++. +|- -|-+++.+|.++...|. ..+++..+.+|-+-.
T Consensus 456 g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 456 GVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 77778889999999999988743 111 35678888888888887 899999999887544
No 404
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.89 E-value=28 Score=30.27 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=37.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 216 LEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
-....+++..|..+++......|.+.. +..+..+...|..| ..-++.+|.+.++..+..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~---~~~~~~l~~~y~~W---D~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREE---YQRYKDLCEGYDAW---DRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhh---HHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHH
Confidence 345778888888888888876555432 22223333333333 567788888888877664
No 405
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.88 E-value=24 Score=29.48 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE 126 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 126 (365)
.++|...+.++.+.||.+.|.+.+.+.....- +-.-..+.+|.+|....-..+.++..+..++. .++- ...-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDW-eRrN 181 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDW-ERRN 181 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCh-hhhh
Confidence 57999999999999999999999887665322 12334456677776655444444444444444 3221 1112
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.+-...|-+.. ...++.+|-.+|-.++....+.
T Consensus 182 RlKvY~Gly~m---svR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 182 RLKVYQGLYCM---SVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred hHHHHHHHHHH---HHHhHHHHHHHHHHHcccccce
Confidence 22223344444 6788999999999998876654
No 406
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.79 E-value=8.8 Score=24.35 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=29.9
Q ss_pred HhccHHHHHHHHHHHHHhCCcchHHHHHHHH---HHHhhcchHHHHHHHH
Q 036703 65 RYNEVQRARHIFERLVQCHPYNLSAWINFAD---FEMKMGEVDRARNVYE 111 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~~~~~A~~~~~ 111 (365)
..++.++|+....++++..++.+.-|..+|- .+...|++.++++.-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888888888777766666665553 4455566655555433
No 407
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=82.73 E-value=11 Score=31.78 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=52.1
Q ss_pred hcCC-hhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-hHHHHHHHHHHH
Q 036703 32 NLGN-VAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-LSAWINFADFEM 98 (365)
Q Consensus 32 ~~g~-~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~ 98 (365)
..|- .++....+...++.-|+ ...|+.++.++...|.++..+.+|++|+.....- .++-..+.+++.
T Consensus 114 ~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3444 35788899999998898 5799999999999999999999999999876532 344455556654
No 408
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=82.57 E-value=21 Score=30.99 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=67.7
Q ss_pred hHHHHHHH----HHHHHhccHHHHHHHHHHHHHhCCc-------------c-----hHHHHHHHHHHHhhcchHHHHHHH
Q 036703 53 HEGWLSYI----KFKLRYNEVQRARHIFERLVQCHPY-------------N-----LSAWINFADFEMKMGEVDRARNVY 110 (365)
Q Consensus 53 ~~~~~~~~----~~~~~~~~~~~A~~~~~~~l~~~p~-------------~-----~~~~~~~~~~~~~~~~~~~A~~~~ 110 (365)
.+-|+..+ ..+.++++|..|.--|..+++...+ + .-+-..+..+|.+.++.+-|+..-
T Consensus 172 iDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 172 IDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 44565543 4456778888888888777764321 1 123456778999999999999999
Q ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703 111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF 154 (365)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 154 (365)
.+.+.. +|.. ..-++.-|.+.. ...+|.+|-+.+--
T Consensus 252 hrsI~l-nP~~----frnHLrqAavfR---~LeRy~eAarSami 287 (569)
T PF15015_consen 252 HRSINL-NPSY----FRNHLRQAAVFR---RLERYSEAARSAMI 287 (569)
T ss_pred hhhhhc-Ccch----hhHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 999999 8876 677777777777 77788777665543
No 409
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=82.48 E-value=5.1 Score=21.71 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCChh
Q 036703 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVA 37 (365)
Q Consensus 9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 37 (365)
|.+++..+|++...+..|+..+...|+..
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~ 33 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDPA 33 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCHH
Confidence 44455555555555555555555555543
No 410
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.26 E-value=13 Score=33.88 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 102 (365)
....+.++.++|-.++| +++.|++.-.+ .+..+.|+++.|.++..+ .++..=|..+|+.....++
T Consensus 617 rt~va~Fle~~g~~e~A-------L~~s~D~d~rF---elal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQA-------LELSTDPDQRF---ELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhHHhHhhhccchHhh-------hhcCCChhhhh---hhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc
Confidence 45556666666644443 44444422221 223345555555554322 2345556666666666666
Q ss_pred hHHHHHHHHHHHh
Q 036703 103 VDRARNVYECAVE 115 (365)
Q Consensus 103 ~~~A~~~~~~a~~ 115 (365)
+..|.++|.++..
T Consensus 682 l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 682 LPLASECFLRARD 694 (794)
T ss_pred chhHHHHHHhhcc
Confidence 6666666666644
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.25 E-value=14 Score=29.81 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHH
Q 036703 223 QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMEL 302 (365)
Q Consensus 223 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (365)
....+.++++++.........++ ...+-..+|..+ ...|++++|.++|+.+..........-....+...+..+..
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~---~~~l~~~~A~ey-~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRM---ASYLSLEMAEEY-FRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK 229 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 33455555555554332221111 112444566665 57788888888888885543211110011455556666666
Q ss_pred HhCCCccHHHHH
Q 036703 303 CLGNIDPCRKLY 314 (365)
Q Consensus 303 ~~~~~~~A~~~~ 314 (365)
..|+.+....+.
T Consensus 230 ~~~~~~~~l~~~ 241 (247)
T PF11817_consen 230 RLGDVEDYLTTS 241 (247)
T ss_pred HhCCHHHHHHHH
Confidence 667666655543
No 412
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.48 E-value=38 Score=29.38 Aligned_cols=179 Identities=8% Similarity=-0.020 Sum_probs=110.5
Q ss_pred hcCChh-HHHHHHHHHHhhCCC-hHHHHHHHHHH------------HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 32 NLGNVA-GARQIFERWMHWMPD-HEGWLSYIKFK------------LRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 32 ~~g~~~-~A~~~~~~al~~~p~-~~~~~~~~~~~------------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
..|.++ .+.+.-...+..+|+ ...|..-=.+. ..+.-.+.-..+...++..+|++..+|.....++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344443 577777778888888 45554322111 1222345666778889999999999999999999
Q ss_pred Hhhc--chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703 98 MKMG--EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGC-NCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174 (365)
Q Consensus 98 ~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 174 (365)
.+.+ ++..=+.+.+++++. .|.+ ...|...--+..+-. ......+=+++..++|..++.+ ...|.--..+
T Consensus 120 ~~~p~~~~~~EL~lcek~L~~-D~RN----fh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSN--YsaWhyRs~l 192 (421)
T KOG0529|consen 120 QKNPHSDWNTELQLCEKALKQ-DPRN----FHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSN--YSAWHYRSLL 192 (421)
T ss_pred HhCCCchHHHHHHHHHHHHhc-Cccc----ccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchh--hhHHHHHHHH
Confidence 8866 467788999999999 8887 555543222222000 2223455667778888887776 3344433333
Q ss_pred HH-HcCCc--h-hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 036703 175 EK-QYGDR--E-GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLE 217 (365)
Q Consensus 175 ~~-~~~~~--~-~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~ 217 (365)
.. ..+.. . .+....+..-......++-.+|++..+|+...-+.
T Consensus 193 L~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 193 LSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred HHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 32 11111 1 12233344555666778888999999998755444
No 413
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.32 E-value=31 Score=28.27 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 72 ARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 72 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
|+..|.+|+...|++...+..+|.+....|+.-.|+=.|-|++-...|. +.+..++..+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-----~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-----PSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHH
Confidence 5677888888888888888888888888787777777777777552221 455555555554
No 414
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=80.25 E-value=7 Score=35.34 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCccc
Q 036703 324 NCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFL 363 (365)
Q Consensus 324 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~~ 363 (365)
...+|..++..+.+.+++..|+.-|.++++....|.|+.+
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi 625 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVI 625 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHH
Confidence 3446666666666666666666666666666555666554
No 415
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.56 E-value=5.1 Score=25.21 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=12.0
Q ss_pred hcchHHHHHHHHHHHhh
Q 036703 100 MGEVDRARNVYECAVEI 116 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~ 116 (365)
.|++++|+++|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 56777777777777766
No 416
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.43 E-value=57 Score=30.83 Aligned_cols=90 Identities=11% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hH---HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HE---GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF 96 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 96 (365)
..|..+..+....++... .-+...++.+|+ +. +-..+...+.+.++......++ ...|.+....+.++..
T Consensus 65 ~~yl~y~~L~~~l~~~~~--~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A 138 (644)
T PRK11619 65 YPYLEYRQLTQDLMNQPA--VQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYA 138 (644)
T ss_pred HhHHHHHHHHhccccCCH--HHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHH
Confidence 445555555444443211 134444666676 32 2223333334455666555422 2347788888888898
Q ss_pred HHhhcchHHHHHHHHHHHhh
Q 036703 97 EMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~ 116 (365)
....|+.++|.....++-..
T Consensus 139 ~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 139 KWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHcCCHHHHHHHHHHHhcc
Confidence 99999988787766666444
No 417
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.08 E-value=28 Score=27.68 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=55.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhcC---CCchhhhHHHHhHHHHHHHHHHHhhccCCh-hHH-HHHHHHHHhccccCCCcchh
Q 036703 216 LEERVGNQERVREVYERAIANV---PPAEEKRYWQRYIYLWINYALYKEVDAGDL-ERT-RDVYRTLFIFYFSFSPRMEE 290 (365)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a-~~~~~~a~~~~~~~~~~~~~ 290 (365)
.....|+++.|.++...++... |+......-...++-...++... ...|.. +-. ...+...... ... |+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~-~~ag~~~e~~~~~~~~~l~~~----~dm-pd 165 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKA-ASAGESVEPYFLRVFLDLTTE----WDM-PD 165 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHH-HHcCCCCChHHHHHHHHHHhc----CCC-Ch
Confidence 3568899999999999999874 33211100001122233333332 234432 211 1122222111 111 44
Q ss_pred ---HHHHHHHHHHHH---------HhCCCccHHHHHHHHHhhCcc
Q 036703 291 ---RRIFKKYIEMEL---------CLGNIDPCRKLYEKYLEWSPE 323 (365)
Q Consensus 291 ---~~~~~~~~~~~~---------~~~~~~~A~~~~~~al~~~p~ 323 (365)
..++...|..+. ..++...|..++++|+.++|+
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 566667777663 345667899999999999985
No 418
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=78.93 E-value=27 Score=29.87 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCCh--hH
Q 036703 192 MRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDL--ER 269 (365)
Q Consensus 192 a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 269 (365)
...+++.+++.+|+..+.|..+..+..+..-.++-++.++.++...-.....+--..-+.+-+..-.+ ...+.. ..
T Consensus 108 ~~~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~Ak~F--s~~~~lsa~~ 185 (372)
T PRK15338 108 LEEFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETDPKTLKAGINCALKARLF--GKALSLKPGL 185 (372)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHH--HhhcCCCHHH
Confidence 34788889999999999999999987755544445555555544311111110000002222211122 133333 66
Q ss_pred HHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh-----CcchHHHHHHHHHHHhhccc
Q 036703 270 TRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW-----SPENCYAWSKYTELEKSLDE 340 (365)
Q Consensus 270 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~ 340 (365)
-+.+|...+..+. |-..+|..++.-| ...+.+.+..+..+++.. +| +.. ...++.+..+.|+
T Consensus 186 LR~lYR~Fl~~d~------~~~~iY~~Wieey-g~~~R~~il~Fl~~AL~~DlqS~~P-s~~-~~EFG~l~~~l~~ 252 (372)
T PRK15338 186 LRASYRQFLQSES------HEVEIYSDWIASY-GYQRRLVVLDFIEGSLLTDIDANDA-SCS-RLEFGQLLRRLTQ 252 (372)
T ss_pred HHHHHHHHHhccC------cHHHHHHHHHHHh-CccHHHHHHHHHHHHHHhHHhcCCC-CCC-HHHHHHHHHHHHH
Confidence 7888888888752 4456677766655 556788899999998855 35 332 2445555555544
No 419
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.59 E-value=62 Score=30.74 Aligned_cols=29 Identities=21% Similarity=0.136 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
..+...++..|. ..++|..|...|-++.+
T Consensus 505 ~~L~e~La~LYl---~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 505 TALLEVLAHLYL---YDNKYEKALPIYLKLQD 533 (846)
T ss_pred hhHHHHHHHHHH---HccChHHHHHHHHhccC
Confidence 345556888888 88999999988877653
No 420
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=77.96 E-value=24 Score=25.60 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=42.1
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703 43 FERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102 (365)
Q Consensus 43 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 102 (365)
-.+.+++--........+.-....|++.-|.++...++..+|++..+....++.+.+.|.
T Consensus 60 A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 60 AKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 334444444445555666667788999999999999999999999888888888777664
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.85 E-value=48 Score=29.04 Aligned_cols=132 Identities=12% Similarity=0.101 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH-------HhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-HHHHH
Q 036703 23 WNNYIRMEENLGNVAGARQIFERW-------MHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-SAWIN 92 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~a-------l~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~ 92 (365)
.+++.+++.-.||+..|+++++-. ....|. ..++...|-+|...+++..|+..|...+..-.... .....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 456778888899999999987543 222333 56778889999999999999999998875322111 00111
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH--HHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEA--EQLFVAFAKFEEMGCNCKETDRARCIYKFAL 156 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 156 (365)
-.+.-.-.+..++...++--++.. .|..-+++ ..+--.++.-.. ....|+.+.-.++|..+.
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l-~p~~lde~i~~~lkeky~ek~~-kmq~gd~~~f~elF~~ac 268 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSL-CPQRLDESISSQLKEKYGEKME-KMQRGDEEAFEELFSFAC 268 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHH-HHHccCHHHHHHHHHhhC
Confidence 111111123344444455445555 55420111 111112222111 005577777777777665
No 422
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.75 E-value=3.6 Score=25.85 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=9.4
Q ss_pred hCCCccHHHHHHHHHhh
Q 036703 304 LGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 304 ~~~~~~A~~~~~~al~~ 320 (365)
.|++++|..+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 35555566665555543
No 423
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.30 E-value=38 Score=27.64 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH----------------hcCCCchhhhHHHHhHHHHHHHHHHHhhccCChh
Q 036703 205 MNYDTWFDYIRLEERVGNQERVREVYERAI----------------ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLE 268 (365)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (365)
.++.++..+|..+.+.|++.+|+..|-.+- +..|.+ ..+++..+.+--...++..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e---------~dlfi~RaVL~yL~l~n~~ 158 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE---------ADLFIARAVLQYLCLGNLR 158 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHTTBHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc---------hhHHHHHHHHHHHHhcCHH
Confidence 467889999999989999888887774321 112222 1233333333224678888
Q ss_pred HHHHHHHHHHhc
Q 036703 269 RTRDVYRTLFIF 280 (365)
Q Consensus 269 ~a~~~~~~a~~~ 280 (365)
.|...+..-++.
T Consensus 159 ~A~~~~~~f~~~ 170 (260)
T PF04190_consen 159 DANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776655
No 424
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=77.13 E-value=22 Score=30.03 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703 68 EVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 68 ~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
-.++...++..++..-|+- +..|+.+|.++...|.++..+.+|++|+.. ...
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a-gAq 172 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA-GAQ 172 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCC
Confidence 4467777888888888853 578999999999999999999999999998 544
No 425
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=76.00 E-value=65 Score=29.62 Aligned_cols=131 Identities=10% Similarity=0.030 Sum_probs=80.0
Q ss_pred HhCCCch-----HHHHHHHHHHHhc------------CChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhc--cHHHHHH
Q 036703 14 TLSPRVD-----QLWNNYIRMEENL------------GNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYN--EVQRARH 74 (365)
Q Consensus 14 ~~~p~~~-----~~~~~~~~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~A~~ 74 (365)
...|+++ .+|..+..++... |+.++|+...++...-.+..-.....+.+....+ ....-..
T Consensus 286 ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~ 365 (547)
T PF14929_consen 286 EKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSS 365 (547)
T ss_pred ccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHH
Confidence 5556666 7777777766432 6777887777665443333223333344444444 6777888
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHH---HhhhhcCChhhHHHHHHHHHHHHHhccc-cchhHHHHH
Q 036703 75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECA---VEIFLADDHDEAEQLFVAFAKFEEMGCN-CKETDRARC 150 (365)
Q Consensus 75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~ 150 (365)
+|+.+++.+|......-.+..++.. ...+.++++-. +.. .| +..+|..++..+. + .++++.-.+
T Consensus 366 ~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~-~~-----s~~iwle~~~~~l---~~~~~~~~~~e 433 (547)
T PF14929_consen 366 CLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDL-VP-----SHPIWLEFVSCFL---KNPSRFEDKEE 433 (547)
T ss_pred HHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhc-CC-----CchHHHHHHHHHH---hccccccccHH
Confidence 9999999999766655555554443 44455555532 233 32 2889999999888 6 455554445
Q ss_pred HHHHHh
Q 036703 151 IYKFAL 156 (365)
Q Consensus 151 ~~~~~l 156 (365)
..+.++
T Consensus 434 ~~~~~l 439 (547)
T PF14929_consen 434 DHKSAL 439 (547)
T ss_pred HHHHHH
Confidence 555554
No 426
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=75.51 E-value=49 Score=27.98 Aligned_cols=274 Identities=10% Similarity=0.041 Sum_probs=141.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhh--CCC---------hHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCC--cchHH
Q 036703 26 YIRMEENLGNVAGARQIFERWMHW--MPD---------HEGWLSYIKFKLRYNEVQRARHIFERLVQ---CHP--YNLSA 89 (365)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~al~~--~p~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~p--~~~~~ 89 (365)
.+.......+.++++.++.+.+.. .|+ ......+++.+.+.|+.++-+.+...... .-+ ....+
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKl 89 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKL 89 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444555667788888887763 111 34667888888888888777666554332 111 12233
Q ss_pred HHHHHHHHHh-hcchHHHHHHHHHHHhhhhcCChh--hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC---c-
Q 036703 90 WINFADFEMK-MGEVDRARNVYECAVEIFLADDHD--EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK---G- 162 (365)
Q Consensus 90 ~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~- 162 (365)
...+.+.... -+..+.-+.+....++. ...... -...+-..++.+|. ..++|.+|+.+....++.... .
T Consensus 90 vR~Lvd~~~~~~~~~~~~i~l~~~cIeW-A~~ekRtFLRq~Learli~Ly~---d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 90 VRSLVDMFLKIDDGTGDQIELCTECIEW-AKREKRTFLRQSLEARLIRLYN---DTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHccCCCCcchHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHhccccc
Confidence 3333333332 23334444555555544 221100 01223345677788 999999999988776653221 1
Q ss_pred hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc-----CCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 036703 163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK-----NPMNYDT--WFDYIRLEERVGNQERVREVYERAIA 235 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~-----~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~ 235 (365)
...++...=...+....+ +.+|+..+..+-.. +|....+ =..-|-++....+|..|..+|-++++
T Consensus 166 lLvev~llESK~y~~l~N--------l~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRN--------LPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred ceeeehhhhhHHHHHHhc--------chhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence 111111111122222222 12455555444331 2322222 12223344455899999999999998
Q ss_pred cCCCchhh-hHHHHhHHHHHHHHHHHhhccCChhHHHHHHH--HHHhccccCCCcchhHHHHHHHHHHHH--HhCCCccH
Q 036703 236 NVPPAEEK-RYWQRYIYLWINYALYKEVDAGDLERTRDVYR--TLFIFYFSFSPRMEERRIFKKYIEMEL--CLGNIDPC 310 (365)
Q Consensus 236 ~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A 310 (365)
-...-... . ...-+.|..+.....+..++.-.++. .+++.. . |+.+.....++.+. ...+|+.|
T Consensus 238 gf~s~~~~v~-----A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~--g----~~i~AmkavAeA~~nRSLkdF~~A 306 (411)
T KOG1463|consen 238 GFDSLDDDVK-----ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYA--G----RDIDAMKAVAEAFGNRSLKDFEKA 306 (411)
T ss_pred cccccCCcHH-----HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhcc--C----cchHHHHHHHHHhcCCcHHHHHHH
Confidence 74332110 0 11222233222234566666555543 334421 1 55666677777664 35678888
Q ss_pred HHHHHHHHhhCc
Q 036703 311 RKLYEKYLEWSP 322 (365)
Q Consensus 311 ~~~~~~al~~~p 322 (365)
..-|..-+..+|
T Consensus 307 L~~yk~eL~~D~ 318 (411)
T KOG1463|consen 307 LADYKKELAEDP 318 (411)
T ss_pred HHHhHHHHhcCh
Confidence 888888887776
No 427
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.09 E-value=50 Score=27.89 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHHh-CCCchHHHHHHHHHHHhc-----CChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHH
Q 036703 2 IDHGRNAWDRVVTL-SPRVDQLWNNYIRMEENL-----GNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHI 75 (365)
Q Consensus 2 ~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~ 75 (365)
++++..+..+++.. .|.-..+.-.++.+.... -++..-..+|.-.....|++..-++-+-...+..-.+.+..+
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ 351 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAM 351 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHH
Confidence 35667778888765 455455555555554432 356667777887778888844333444444444456667776
Q ss_pred HHHHHHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 76 FERLVQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 76 ~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
.+-+... -......+-.-+.++.+.|..++|...|++++.. .++.
T Consensus 352 ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L-a~~~ 398 (415)
T COG4941 352 VEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL-ARNA 398 (415)
T ss_pred HHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCh
Confidence 6665543 1224456777899999999999999999999998 7664
No 428
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=74.40 E-value=71 Score=29.36 Aligned_cols=155 Identities=10% Similarity=0.083 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHHhc---------cccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703 103 VDRARNVYECAVEIFLADDH-DEAEQLFVAFAKFEEMG---------CNCKETDRARCIYKFALDRIPKGRAEDLYRKFL 172 (365)
Q Consensus 103 ~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 172 (365)
.+++..+....-+. .|+++ ......|..+.+++..- ...|+.++|+...++.....+. +......+
T Consensus 274 qee~~~~~s~~~ek-~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~---~lpi~~~~ 349 (547)
T PF14929_consen 274 QEEYRESLSNYAEK-FPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTC---ALPIRLRA 349 (547)
T ss_pred HHHHHHHHhhcccc-ccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCc---cchHHHHH
Confidence 34444444333344 55540 01116777666666500 0227888888888775443332 22333334
Q ss_pred HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH---HhcCCCchhhhHHHHh
Q 036703 173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERA---IANVPPAEEKRYWQRY 249 (365)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---~~~~p~~~~~~~~~~~ 249 (365)
.+....+... ...-..+|+.+++.+|......-.++.++.. ...+..+++-+ +...|..+
T Consensus 350 ~lle~~d~~~------~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s~~-------- 412 (547)
T PF14929_consen 350 HLLEYFDQNN------SSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPSHP-------- 412 (547)
T ss_pred HHHHHhCccc------HHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCCch--------
Confidence 4444444211 2356788999999999887766666665443 45566666633 23345543
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 250 IYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
+|..++.......++++.-.+..+.++++
T Consensus 413 --iwle~~~~~l~~~~~~~~~~e~~~~~l~v 441 (547)
T PF14929_consen 413 --IWLEFVSCFLKNPSRFEDKEEDHKSALKV 441 (547)
T ss_pred --HHHHHHHHHHhccccccccHHHHHHHHhc
Confidence 88888887633356665555555555543
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.25 E-value=44 Score=26.83 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHh-----cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 224 ERVREVYERAIA-----NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 224 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
++|...|++|+. ..|.+|. .+.+.++++.|+.--.|+.++|+.+.++++..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~------rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPL------RLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHH------HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcH------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455666666554 2455553 24567777777644689999999998888765
No 430
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=74.19 E-value=97 Score=30.78 Aligned_cols=90 Identities=10% Similarity=-0.081 Sum_probs=65.3
Q ss_pred ChhhHHHHHHHHHHhCCCchHH---HHHHHHHHHh----cC---ChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQL---WNNYIRMEEN----LG---NVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEV 69 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~----~g---~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~ 69 (365)
.|++|...|++....+|.-... .+..|-.... .| .+++|+..|++.-. .|. +--++.-+-+|.+.|++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 568 (932)
T PRK13184 490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEY 568 (932)
T ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhH
Confidence 3789999999999999876443 3444433332 23 35667777766533 333 56678888999999999
Q ss_pred HHHHHHHHHHHHhCCcchHHHH
Q 036703 70 QRARHIFERLVQCHPYNLSAWI 91 (365)
Q Consensus 70 ~~A~~~~~~~l~~~p~~~~~~~ 91 (365)
++-++.|.-+++..|..|.+-.
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 569 NEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHHHHHHHhcCCCCccHH
Confidence 9999999999999998776543
No 431
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.17 E-value=35 Score=25.74 Aligned_cols=133 Identities=8% Similarity=0.011 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChh
Q 036703 191 KMRLQYEDGVRKNPMNY--DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLE 268 (365)
Q Consensus 191 ~a~~~~~~~l~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (365)
+|...|...-+..-.+. -+.+..+.+..+.|+...|...|.++-...|.... .+.. ..+.-+-++ ...|.|+
T Consensus 76 ~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~---~rd~--ARlraa~lL-vD~gsy~ 149 (221)
T COG4649 76 DALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI---GRDL--ARLRAAYLL-VDNGSYD 149 (221)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch---hhHH--HHHHHHHHH-hccccHH
Confidence 36666655554443332 34566778888999999999999998776443211 0111 223333333 5888888
Q ss_pred HHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703 269 RTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 269 ~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 336 (365)
+.....+..-.-.. |- ...-..++-.-++.|++.+|++.|..... +.+.+....+.+++.+
T Consensus 150 dV~srvepLa~d~n------~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 150 DVSSRVEPLAGDGN------PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHhhhccCCCC------hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 87766554332210 21 33445566677899999999999999876 4444554445554443
No 432
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=73.75 E-value=39 Score=31.10 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=52.3
Q ss_pred hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHH
Q 036703 32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVY 110 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 110 (365)
+....+.++...+.-+.-... ....+.-+++.-..|..++|-.+|++.+..+|+ ..+..+++-+.+.|-...|..++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 344556666665544422222 233444556666777888888888888888885 66778888888888888887777
Q ss_pred H
Q 036703 111 E 111 (365)
Q Consensus 111 ~ 111 (365)
.
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 6
No 433
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.95 E-value=52 Score=27.14 Aligned_cols=142 Identities=12% Similarity=0.048 Sum_probs=84.0
Q ss_pred CCCchHHHHHHHHHHHh--cCChhHHHHHHHHHH----hhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-
Q 036703 16 SPRVDQLWNNYIRMEEN--LGNVAGARQIFERWM----HWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY- 85 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al----~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~- 85 (365)
+|.....|+.+-+-..+ ...-++-++-+.+.+ +.+.+ .++|...+.+|.+.+|.+.+.+...+.+...-.
T Consensus 69 n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 69 NPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred CCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 56665556544322221 122233444443333 23323 579999999999999999998888877663321
Q ss_pred --chH---HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 86 --NLS---AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 86 --~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
..+ .-..+|.+|....-.++.++..+.+++. .++- ...-..-...|-+.. ...++.+|-.++-..+....
T Consensus 149 g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDW-eRrNRyK~Y~Gi~~m---~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 149 GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDW-ERRNRYKVYKGIFKM---MRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCH-HhhhhHHHHHHHHHH---HHHhhHHHHHHHHHHhcccc
Confidence 222 2345566666666666777777777776 4331 111222223344445 66789999999998887666
Q ss_pred Cc
Q 036703 161 KG 162 (365)
Q Consensus 161 ~~ 162 (365)
+.
T Consensus 224 S~ 225 (412)
T COG5187 224 SS 225 (412)
T ss_pred cc
Confidence 54
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.74 E-value=48 Score=26.61 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHH-----cCCCCHH---HHHHHHHHH-HHhCCHHHHHHHHHHHHhc
Q 036703 189 AGKMRLQYEDGVR-----KNPMNYD---TWFDYIRLE-ERVGNQERVREVYERAIAN 236 (365)
Q Consensus 189 ~~~a~~~~~~~l~-----~~p~~~~---~~~~~~~~~-~~~~~~~~A~~~~~~~~~~ 236 (365)
.++|...|++|+. ..|.++- +.++++.++ ...|+.++|..+.++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4577888888776 4666753 445555554 5689999998888877654
No 435
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=72.35 E-value=65 Score=27.97 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=40.4
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703 215 RLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT 276 (365)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 276 (365)
......+++..|..+|+.+....++......+..+..+...|..| ..-++++|.+.+++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~W---D~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHW---DRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHH---HccCHHHHHHHHhh
Confidence 345678999999999999998866544333333333333333333 67789999999985
No 436
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=70.71 E-value=65 Score=27.27 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHhhcchHHHHHHHHHHHhhhhcCChh--hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc------cCCCchhHHHH
Q 036703 97 EMKMGEVDRARNVYECAVEIFLADDHD--EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD------RIPKGRAEDLY 168 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~~ 168 (365)
..+.++.++|++.+++..+. ...... .-..+....+.++. ..|+..++++.+...-+ ..|.+....+|
T Consensus 85 ~~~~~D~~~al~~Le~i~~~-~~~~~e~~av~~~~t~~~r~~L---~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEK-LKEYKEPDAVIYILTEIARLKL---EINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHhccHHHHHHHHHHHHHH-HHhhccchhHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 33456888999999988876 432211 22345566778888 88998888888876544 12333334555
Q ss_pred HHHHHHHHHcCCch
Q 036703 169 RKFLAFEKQYGDRE 182 (365)
Q Consensus 169 ~~~~~~~~~~~~~~ 182 (365)
..-..+++..|++.
T Consensus 161 ~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHhHH
Confidence 55566777777655
No 437
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.55 E-value=40 Score=30.93 Aligned_cols=111 Identities=13% Similarity=0.168 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703 208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR 287 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 287 (365)
+.....+.++..+|-.+ +|+...++.... ..++ .+.|+++.|..+..++
T Consensus 615 ~~rt~va~Fle~~g~~e-------~AL~~s~D~d~r----------Fela----l~lgrl~iA~~la~e~---------- 663 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKE-------QALELSTDPDQR----------FELA----LKLGRLDIAFDLAVEA---------- 663 (794)
T ss_pred hhhhhHHhHhhhccchH-------hhhhcCCChhhh----------hhhh----hhcCcHHHHHHHHHhh----------
Confidence 34555666666665444 455555554321 1111 4678888887765544
Q ss_pred chhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhC--------cchHHHHHHHHHHHh-------------hccchhHHHH
Q 036703 288 MEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS--------PENCYAWSKYTELEK-------------SLDETERARA 346 (365)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~-------------~~g~~~~A~~ 346 (365)
.++.-|..+|++....|++..|.++|.++.... ..+.+....++.... ..|+++++.+
T Consensus 664 -~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 664 -NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred -cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHH
Confidence 335578999999999999999999999985442 234444444544433 3456666666
Q ss_pred HHHH
Q 036703 347 IFEL 350 (365)
Q Consensus 347 ~~~~ 350 (365)
++.+
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 6543
No 438
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.43 E-value=1.3e+02 Score=30.47 Aligned_cols=195 Identities=13% Similarity=0.078 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHH------HhccHHHHHHHHHHHHHhCCcc--hHHHHHH
Q 036703 22 LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKL------RYNEVQRARHIFERLVQCHPYN--LSAWINF 93 (365)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~------~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~ 93 (365)
....+|.++...|...+|+..|.+|..-..+..+...+..... ..|+.. .+.. ...+...
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~------------s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTP------------SEELTALHYYLKV 989 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCC------------CchHHHHHHHHHH
Confidence 3455666666777777777777777654433222222222111 111100 0001 2234445
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch-hHHHHHHHH
Q 036703 94 ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFL 172 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~ 172 (365)
.+++.+.+-.+.+.++-..|++. .|++.+..+.+....-+.+. ..|.+-+|.+.+ -.+|+.. .......++
T Consensus 990 ~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhl---dlgh~~qAy~ai----~~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 990 VRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHL---DLGHWFQAYKAI----LRNPDSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhh---chhhHHHHHHHH----HcCCcHHHHHHHHHHHH
Confidence 56677788889999999999999 77764555666666667777 888888887654 3355533 233444455
Q ss_pred HHHHHcCCchhhhHH----HHHHHHH-HHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHH-HHHHHHhc
Q 036703 173 AFEKQYGDREGIEDA----IAGKMRL-QYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVRE-VYERAIAN 236 (365)
Q Consensus 173 ~~~~~~~~~~~~~~~----~~~~a~~-~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~ 236 (365)
......|....+-+. +.++-.. +++.+-+..|... ..+..+-.++...+++.+|-. .|+.+...
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 555555554322110 0011222 4444444444332 333344445677777777544 45555544
No 439
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.23 E-value=62 Score=30.68 Aligned_cols=182 Identities=13% Similarity=0.094 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHH
Q 036703 123 DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED 198 (365)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 198 (365)
.-++.+..++...|. ...+|+..+++.+.. +..|+.- ...+...|+-...+.+.+.. ..+|....-.
T Consensus 198 VL~~d~V~nlmlSyR---DvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GD-----RakAL~~~l~ 268 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYR---DVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGD-----RAKALNTVLP 268 (1226)
T ss_pred ccCHHHHHHHHhhhc---cccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCcc-----HHHHHHHHHH
Confidence 445677778888888 889999888887764 3445310 00111111111111111111 2356666666
Q ss_pred HHHc-CCCCHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChh
Q 036703 199 GVRK-NPMNYDTWFDYIRLEE---------RVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLE 268 (365)
Q Consensus 199 ~l~~-~p~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (365)
+++. .|-.++++...|.+|. ..+..+.|.+.|+++.+..|... .-++++.++......++
T Consensus 269 lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~----------sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 269 LVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY----------SGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh----------ccccHHHHHHHhhhhcc
Confidence 6653 3444566655555553 34567789999999999998853 22334443321222344
Q ss_pred HHHHHHHHHHhccccCCCc--chh-HHHHHH--HHHHHHHhCCCccHHHHHHHHHhhCcc
Q 036703 269 RTRDVYRTLFIFYFSFSPR--MEE-RRIFKK--YIEMELCLGNIDPCRKLYEKYLEWSPE 323 (365)
Q Consensus 269 ~a~~~~~~a~~~~~~~~~~--~~~-~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~ 323 (365)
...++=.-++++..-.+.- ..+ .+.|.. +..+..-.+++.+|...-+.+.++.|.
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 4444333333331110000 011 111211 111122357888888888888887664
No 440
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.17 E-value=7.1 Score=24.02 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=7.4
Q ss_pred ccCChhHHHHHHHHHHh
Q 036703 263 DAGDLERTRDVYRTLFI 279 (365)
Q Consensus 263 ~~~~~~~a~~~~~~a~~ 279 (365)
..|++++|+..|..++.
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44444444444444433
No 441
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.66 E-value=0.71 Score=33.49 Aligned_cols=40 Identities=5% Similarity=-0.030 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHhcCChhHHHHHHH
Q 036703 5 GRNAWDRVVTLS-PRVDQLWNNYIRMEENLGNVAGARQIFE 44 (365)
Q Consensus 5 A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 44 (365)
...+++.++..+ +.++.....++.++.+.+.+++...+++
T Consensus 26 l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 26 LIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344556666544 3446667777777777776666666665
No 442
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=68.45 E-value=77 Score=27.25 Aligned_cols=110 Identities=8% Similarity=0.009 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh-----CCC-hHHHHH---HHHHHHHhccH--HHHHH
Q 036703 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW-----MPD-HEGWLS---YIKFKLRYNEV--QRARH 74 (365)
Q Consensus 6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~---~~~~~~~~~~~--~~A~~ 74 (365)
..++..+++.+|+..++|..+..+..+..-.++-++..+.++.. .|. ..+-.. .++.....++. ..-+.
T Consensus 109 ~~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR~ 188 (372)
T PRK15338 109 EEFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLRA 188 (372)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHHH
Confidence 35566666777777777777777666444333333344333321 121 111111 12222233333 55666
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+|+..+..+..-..+|-.+..-| ...+.+.++.++.+++-.
T Consensus 189 lYR~Fl~~d~~~~~iY~~Wieey-g~~~R~~il~Fl~~AL~~ 229 (372)
T PRK15338 189 SYRQFLQSESHEVEIYSDWIASY-GYQRRLVVLDFIEGSLLT 229 (372)
T ss_pred HHHHHHhccCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHh
Confidence 77777776665556666655544 344566666666666543
No 443
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=67.49 E-value=90 Score=27.70 Aligned_cols=90 Identities=12% Similarity=0.181 Sum_probs=64.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCcchHHHHHHHHHH
Q 036703 25 NYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQ--CHPYNLSAWINFADFE 97 (365)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~ 97 (365)
.++....+..+.+.+..++-+.-. .|. +.+...+++.+...|..+.+..++..=+. +.| |...+..+.+.+
T Consensus 71 ~fvn~~~~~~~~d~~~~~L~k~R~-s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~-D~~s~n~Lmd~f 148 (429)
T PF10037_consen 71 IFVNNVESKDDLDEVEDVLYKFRH-SPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFP-DNFSFNLLMDHF 148 (429)
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHc-CcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCC-ChhhHHHHHHHH
Confidence 344444444555666666665433 333 33445778889999999999999976555 567 666778888999
Q ss_pred HhhcchHHHHHHHHHHHhh
Q 036703 98 MKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~ 116 (365)
.+.|++..|.++...+...
T Consensus 149 l~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 149 LKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred hhcccHHHHHHHHHHHHHh
Confidence 9999999999998887665
No 444
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=67.40 E-value=29 Score=29.89 Aligned_cols=31 Identities=13% Similarity=0.424 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703 70 QRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102 (365)
Q Consensus 70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 102 (365)
..|+..+++|.. .++|.+|..+|..++..|+
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 445555555543 5578999999999988885
No 445
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.19 E-value=86 Score=27.34 Aligned_cols=157 Identities=9% Similarity=0.016 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHh------------cCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc--c
Q 036703 4 HGRNAWDRVVTLSPRVDQLWNNYIRMEEN------------LGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN--E 68 (365)
Q Consensus 4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~------------~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~--~ 68 (365)
.+.++=.+.+..+|+...+|...=.+... +.-.++-+.+...+++.+|+ -.+|.....+..+.+ +
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 34555566777789888888654333322 12345566777888999999 589999998888766 4
Q ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc----chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh-c--cc
Q 036703 69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMG----EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM-G--CN 141 (365)
Q Consensus 69 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~ 141 (365)
+..-.++.+++++.+|.|-..|...--+..... ...+=+++..+++.. ++.+ ..+|.....+... + ..
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~-nfSN----YsaWhyRs~lL~~l~~~~~ 201 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIND-NFSN----YSAWHYRSLLLSTLHPKEA 201 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhc-cchh----hhHHHHHHHHHHHhccccc
Confidence 688899999999999999888865544433322 244557778888888 7777 7777765555430 0 01
Q ss_pred cch------hHHHHHHHHHHhccCCCchhH
Q 036703 142 CKE------TDRARCIYKFALDRIPKGRAE 165 (365)
Q Consensus 142 ~~~------~~~A~~~~~~~l~~~p~~~~~ 165 (365)
.|+ ..+-++....|+-.+|.+.+.
T Consensus 202 ~g~~~~~~~l~sEle~v~saiFTdp~DqS~ 231 (421)
T KOG0529|consen 202 DGNFMPKELLQSELEMVHSAIFTDPEDQSC 231 (421)
T ss_pred cCccCCHHHHHHHHHHHHHHHhcCccccce
Confidence 231 223445555666677776533
No 446
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.80 E-value=37 Score=24.64 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=34.3
Q ss_pred HHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccch
Q 036703 298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDET 341 (365)
Q Consensus 298 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 341 (365)
+.-....|++.-|..+.+.++..+|+|..+....+..+...|..
T Consensus 77 A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 77 AQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 33344568999999999999999999999999999999888753
No 447
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=66.66 E-value=52 Score=30.33 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=62.5
Q ss_pred HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
+....+.++...+.-+.....+....+.-+.++-..|..++|-.+|++.+.. .|++ .+..+++-+. +.|-
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~---~~~~ 89 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQ-NNDE------ARYEYARRLY---NTGL 89 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHh-CCcc------hHHHHHHHHH---hhhh
Confidence 3445677777777666555555666677788888899999999999999999 7654 7788888888 8888
Q ss_pred hHHHHHHHHH
Q 036703 145 TDRARCIYKF 154 (365)
Q Consensus 145 ~~~A~~~~~~ 154 (365)
...|..++++
T Consensus 90 ~~~~~~~~~~ 99 (578)
T PRK15490 90 AKDAQLILKK 99 (578)
T ss_pred hhHHHHHHHH
Confidence 8888888873
No 448
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=65.08 E-value=38 Score=22.63 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHH
Q 036703 269 RTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330 (365)
Q Consensus 269 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 330 (365)
+.+.-+..+...+. + |+|.+.......+.+.+++.-|..+++-.-....++...|-.
T Consensus 25 e~rr~mN~l~~~Dl----V-P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~ 81 (103)
T cd00923 25 ELRRGLNNLFGYDL----V-PEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPY 81 (103)
T ss_pred HHHHHHHHHhcccc----C-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHH
Confidence 44444455444422 1 888999999999999999999999999775454444444443
No 449
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.98 E-value=60 Score=24.76 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHhhCCCh----H-----HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 36 VAGARQIFERWMHWMPDH----E-----GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 36 ~~~A~~~~~~al~~~p~~----~-----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
.+.|+.+++..-+-.|.+ . +-....-++.+.|.+++|.+++++... +|++...-..+..+-.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 345777777665544331 1 112234567788999999999999888 77666665555544443
No 450
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.95 E-value=35 Score=32.81 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
...|..++.....+|+.+-|+..|++.-.
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 56777788777777877777777776433
No 451
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=64.79 E-value=2.1 Score=38.93 Aligned_cols=165 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCc-chHHHHHHHHHHHhhcchHHHHHHHHHH-HhhhhcCChhhHHHHHH
Q 036703 55 GWLSYIKFKLRYNEVQRARHIFERLVQ--CHPY-NLSAWINFADFEMKMGEVDRARNVYECA-VEIFLADDHDEAEQLFV 130 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~ 130 (365)
..+.-++.+...|++..|..++.+.-. ..|. .....+..+.+....|+.+.|+..+... ... .|. ......+.
T Consensus 26 ~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~-l~~--~~~~~~~~ 102 (536)
T PF04348_consen 26 LLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQ-LPP--EQQARYHQ 102 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCccc-CCH--HHHHHHHH
Confidence 334445667777777777777776552 2221 2334445566666777777777777642 111 221 11233444
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhccCCC-----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC
Q 036703 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPK-----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM 205 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~ 205 (365)
..+.++. ..|+.-+|...+-..-...++ .....+|..+..+-. ..++........
T Consensus 103 l~A~a~~---~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~-----------------~~L~~~~~~~~~ 162 (536)
T PF04348_consen 103 LRAQAYE---QQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPP-----------------EQLQQLRRASEP 162 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---hcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCH-----------------HHHHhhhcCCCH
Confidence 5556666 666665555544332222221 112334444432211 111221112222
Q ss_pred CHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCchh
Q 036703 206 NYDTWFDYIRLEER-VGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 206 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
....|..++.++.. .++...-...++......|.++.
T Consensus 163 ~l~GWl~La~i~~~~~~~p~~l~~al~~Wq~~yP~HPA 200 (536)
T PF04348_consen 163 DLQGWLELALIYRQYQQDPAQLKQALNQWQQRYPNHPA 200 (536)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCcCCcc
Confidence 33567777777655 34444445555555555666553
No 452
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=64.66 E-value=18 Score=22.76 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=10.7
Q ss_pred hcchHHHHHHHHHHHhh
Q 036703 100 MGEVDRARNVYECAVEI 116 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~ 116 (365)
.|++++|..+|..+++.
T Consensus 19 ~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 19 RGDAAAALSLYCSALQY 35 (75)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 46666666666666655
No 453
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=64.61 E-value=89 Score=26.56 Aligned_cols=216 Identities=11% Similarity=0.044 Sum_probs=105.0
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhh-hcCC----hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH---hccCCCchhH
Q 036703 94 ADFEMKMGEVDRARNVYECAVEIF-LADD----HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA---LDRIPKGRAE 165 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---l~~~p~~~~~ 165 (365)
++-....++.+++..+|.+.+... .|.+ ..........++..+. +.|+.++-..+.+.. +...+....+
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~---~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLA---KEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 333444455667777777766520 1111 1122456777888888 777777666655443 2233333334
Q ss_pred HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhh
Q 036703 166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN--YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEK 243 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 243 (365)
.+...+++......+..+.+ +..+..+.+-+.+..... ..+-..++.+|...++|.+|..+....+.....-.++
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~---i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK 164 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQ---IELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDK 164 (411)
T ss_pred HHHHHHHHHHccCCCCcchH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 44444444433322211110 111111111111111100 1233467788899999999998888776542111000
Q ss_pred hHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703 244 RYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 320 (365)
. .++.+.+.=...+ ....+..+|+..+..|-......--. |. ..+-..-|-++....+|.-|..+|-.|++-
T Consensus 165 ~---lLvev~llESK~y-~~l~Nl~KakasLTsART~AnaiYcp-PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 165 I---LLVEVHLLESKAY-HALRNLPKAKASLTSARTTANAIYCP-PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred c---ceeeehhhhhHHH-HHHhcchhHHHHHHHHHHhhcccccC-HHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 0 0133444334444 36677778877777665441110000 33 222222333344447777788877777764
No 454
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=63.67 E-value=7.7 Score=33.20 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=32.5
Q ss_pred CccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc------------hhHHHHHHHHHhcCc
Q 036703 307 IDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE------------TERARAIFELAIAQP 355 (365)
Q Consensus 307 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~------------~~~A~~~~~~a~~~~ 355 (365)
+..|++++++|.. .++|+.|...|.+++..|+ +.+|.+++.+|-+..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 4456666666654 4578899999999999886 566777777776544
No 455
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=63.67 E-value=50 Score=23.39 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=38.9
Q ss_pred cchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc--chHHHHHHHHHHHhhc
Q 036703 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP--ENCYAWSKYTELEKSL 338 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~ 338 (365)
++|+..+....+..+...|++..|.++.+...+..| -...+|..+.+.....
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 337788888888888888999999999998887754 2356777776654433
No 456
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=63.01 E-value=30 Score=21.79 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhCC
Q 036703 72 ARHIFERLVQCHP 84 (365)
Q Consensus 72 A~~~~~~~l~~~p 84 (365)
|++++.+++...|
T Consensus 32 aIe~L~q~~~~~p 44 (75)
T cd02682 32 AIEVLSQIVKNYP 44 (75)
T ss_pred HHHHHHHHHHhCC
Confidence 3334444444444
No 457
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.49 E-value=20 Score=22.69 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=11.9
Q ss_pred hhcchHHHHHHHHHHHhh
Q 036703 99 KMGEVDRARNVYECAVEI 116 (365)
Q Consensus 99 ~~~~~~~A~~~~~~a~~~ 116 (365)
+.|++++|+.+|..+++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 356777777777766665
No 458
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.47 E-value=89 Score=25.85 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHhccccchhHHHHHHH
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLFVAFAKFEEMGCNCKETDRARCIY 152 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 152 (365)
..++.-..+.+++++|+..|.+.+..+.+.+ -.+.......++++|. ..|++..-.+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv---~~g~~~~l~~~i 68 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYV---SKGDYCSLGDTI 68 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHH---hcCCcchHHHHH
Confidence 4556666777888889988888887622221 1223567778888888 888776655544
No 459
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.72 E-value=1.6e+02 Score=28.54 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC
Q 036703 124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN 203 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 203 (365)
....+...+|..+. +.|++++|...|-+.|.....+ .+...+. +... +..-...++...+..
T Consensus 366 ~~~~i~~kYgd~Ly---~Kgdf~~A~~qYI~tI~~le~s---~Vi~kfL-------daq~-----IknLt~YLe~L~~~g 427 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLY---GKGDFDEATDQYIETIGFLEPS---EVIKKFL-------DAQR-----IKNLTSYLEALHKKG 427 (933)
T ss_pred HHHHHHHHHHHHHH---hcCCHHHHHHHHHHHcccCChH---HHHHHhc-------CHHH-----HHHHHHHHHHHHHcc
Confidence 34667788888888 8888888888888887754332 2333221 1111 111222333333333
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 036703 204 PMNYDTWFDYIRLEERVGNQERVREVYE 231 (365)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 231 (365)
-.+.+--..+..+|.+.++.++..+..+
T Consensus 428 la~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 428 LANSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred cccchhHHHHHHHHHHhcchHHHHHHHh
Confidence 3333444455666667776666544433
No 460
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=61.04 E-value=36 Score=23.86 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=17.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703 58 SYIKFKLRYNEVQRARHIFERLVQCHPY 85 (365)
Q Consensus 58 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 85 (365)
.+|..+...|++++|...|-+|+..+|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4555556667777777777777777663
No 461
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=60.57 E-value=1e+02 Score=27.37 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh--hCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMH--WMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQC 82 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 82 (365)
-..+++.+...|..+.++.++..=+. ++|+......+.+...+.|++..|.++...++..
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 35778889999999999999877664 5788778888999999999999999998876653
No 462
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=60.38 E-value=13 Score=23.72 Aligned_cols=14 Identities=0% Similarity=-0.088 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHhc
Q 036703 267 LERTRDVYRTLFIF 280 (365)
Q Consensus 267 ~~~a~~~~~~a~~~ 280 (365)
++.|....+++++.
T Consensus 5 ~~~A~~~I~kaL~~ 18 (79)
T cd02679 5 YKQAFEEISKALRA 18 (79)
T ss_pred HHHHHHHHHHHhhh
Confidence 34444444444443
No 463
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.74 E-value=39 Score=31.93 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=77.1
Q ss_pred cCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHH---------HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703 33 LGNVAGARQIFERWMHWMPD--HEGWLSYIKFKL---------RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG 101 (365)
Q Consensus 33 ~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~---------~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 101 (365)
-|+-++|....-.+++.... ++.+...|++|. ..+..+.|.+.|+++++..| +...-++++-++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP-~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP-LEYSGINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc-hhhccccHHHHHHHhh
Confidence 47888999998888876544 455555555554 33567889999999999999 6666677777777766
Q ss_pred c-hHHHHHHHHHHHhhh--hcCC-hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 102 E-VDRARNVYECAVEIF--LADD-HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 102 ~-~~~A~~~~~~a~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
+ ++...++-.-+++.. .+.. .-....-|...|.++...--.+++.+|+..-+...+..|.
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 3 444444433333320 1110 0011122222222222111347888888888888887765
No 464
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=59.32 E-value=64 Score=23.19 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=43.1
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
.+....+|.-++-..++....+....+|.+...+|..|.+.|+..++-+++.+|.+.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 355667888888888888887655558999999999999999999999999999887
No 465
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.84 E-value=92 Score=24.86 Aligned_cols=98 Identities=13% Similarity=-0.008 Sum_probs=55.4
Q ss_pred HHhccHHHHHHHHHHHHHhCCcchHH------------HHHHHHHHHhhcch-HHH-HHHHHHHHhhhhcCChhhHHHHH
Q 036703 64 LRYNEVQRARHIFERLVQCHPYNLSA------------WINFADFEMKMGEV-DRA-RNVYECAVEIFLADDHDEAEQLF 129 (365)
Q Consensus 64 ~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~~~~~~~~~~~~~-~~A-~~~~~~a~~~~~~~~~~~~~~~~ 129 (365)
...|+++.|..+..-+++.+-..|+- ...++.-....|.. +-+ ...+...... ..-+..-....+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~-~dmpd~vrAKl~ 172 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTE-WDMPDEVRAKLY 172 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc-CCCChHHHHHHH
Confidence 46789999999999999865333221 22333344444542 111 2222222221 111112335666
Q ss_pred HHHHHHHHhc------cccchhHHHHHHHHHHhccCCCc
Q 036703 130 VAFAKFEEMG------CNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 130 ~~~~~~~~~~------~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
...|..+... ...++...|+.++++++..+|..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 7777766300 04467789999999999998874
No 466
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=56.93 E-value=55 Score=22.16 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHH
Q 036703 289 EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330 (365)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 330 (365)
|.|.+.......+.+.+++.-|..+++-.-....+...+|-.
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 889999998899999999999999999886665544334433
No 467
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=56.90 E-value=87 Score=23.97 Aligned_cols=14 Identities=29% Similarity=0.166 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHhc
Q 036703 144 ETDRARCIYKFALD 157 (365)
Q Consensus 144 ~~~~A~~~~~~~l~ 157 (365)
++..|.+.|+.+..
T Consensus 88 ~l~~a~r~~~~aC~ 101 (248)
T KOG4014|consen 88 SLSKAIRPMKIACD 101 (248)
T ss_pred CHHHHHHHHHHHhc
Confidence 44555555555544
No 468
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=56.51 E-value=45 Score=23.41 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHhhCc-----c----------hHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 296 KYIEMELCLGNIDPCRKLYEKYLEWSP-----E----------NCYAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 296 ~~~~~~~~~~~~~~A~~~~~~al~~~p-----~----------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
.+|+...+.+++-.++-.|++|+...- + .+-...+++.+....|+.+-..++++-|-
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 445555566666666666666664411 0 23456688899999998887777776553
No 469
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=56.45 E-value=2.3e+02 Score=28.78 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=15.7
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHh
Q 036703 92 NFADFEMKMGEVDRARNVYECAVE 115 (365)
Q Consensus 92 ~~~~~~~~~~~~~~A~~~~~~a~~ 115 (365)
..+.+|.+.|+.++|++.|+.+..
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~d 980 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGD 980 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhcc
Confidence 334566677777777777766543
No 470
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.57 E-value=92 Score=23.84 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhc
Q 036703 297 YIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSL 338 (365)
Q Consensus 297 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 338 (365)
.+.++++.|.+++|.+++++..+ +|++......+..+-...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 45567888999999999999888 777776666665554443
No 471
>PRK12798 chemotaxis protein; Reviewed
Probab=54.57 E-value=1.5e+02 Score=26.06 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703 208 DTWFDYIRLEERVGNQERVREVYERAIAN 236 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 236 (365)
.+|+.++..-.-.|+.+-|...-++++..
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 34444444444444444444444444433
No 472
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=54.43 E-value=1.8e+02 Score=26.95 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHhccCCC
Q 036703 85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC--KETDRARCIYKFALDRIPK 161 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~l~~~p~ 161 (365)
+...+|..+|....+.+++..|+.-|.++.+. .+.+ .+.+...+.+.-. .. .+....+++|+...+..|.
T Consensus 585 D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafkl-kged---ipdvi~diin~ie---Ggpp~dVq~Vrem~dhlak~apt 656 (1141)
T KOG1811|consen 585 DTFGAWHAWGLACLKAENLAAAREKFKQAFKL-KGED---IPDVIFDIINLIE---GGPPRDVQDVREMLDHLAKPAPT 656 (1141)
T ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCC-CCCc---cchHHHHHHHhhc---CCCcchHHHHHHHHHHhccCCcc
Confidence 45678999999999999999999999999887 5443 3555555555433 22 2455666666665555443
No 473
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=54.12 E-value=2.6e+02 Score=28.53 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHh
Q 036703 295 KKYIEMELCLGNIDPCRKLYEKYLE 319 (365)
Q Consensus 295 ~~~~~~~~~~~~~~~A~~~~~~al~ 319 (365)
..++.-+...++.-+|-++....+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4556666677787777777776654
No 474
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=53.72 E-value=35 Score=21.42 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=9.8
Q ss_pred hcchHHHHHHHHHHHhh
Q 036703 100 MGEVDRARNVYECAVEI 116 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~ 116 (365)
.|++++|+.+|..+++.
T Consensus 19 ~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 19 AGNYEEALRLYQHALEY 35 (75)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 45566666666555554
No 475
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=53.67 E-value=1.6e+02 Score=25.90 Aligned_cols=128 Identities=9% Similarity=0.039 Sum_probs=86.7
Q ss_pred HHHhcCChhHHHHHHHHHHhhCC--C--------hHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCc-chHHHHH
Q 036703 29 MEENLGNVAGARQIFERWMHWMP--D--------HEGWLSYIKFKLRYNEVQRARHIFERLVQC-----HPY-NLSAWIN 92 (365)
Q Consensus 29 ~~~~~g~~~~A~~~~~~al~~~p--~--------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~-~~~~~~~ 92 (365)
+...+.++.+|.++-+..+..-. + ..+|+-+...+...|+...-+..+...+.. +.. ...+...
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 34455778888777666553211 1 346777777777778877777777665542 211 2344556
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
+...|...+.++.|.++..+.. .|.. ..+.....+.+|.+-. -+++|..|.+.|-+|+...|..
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~---~pe~~snne~ARY~yY~GrIka---iqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSV---YPEAASNNEWARYLYYLGRIKA---IQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhccc---CccccccHHHHHHHHHHhhHHH---hhcchhHHHHHHHHHHHhCcch
Confidence 6677888889999998887765 3332 1233556667788888 8999999999999999999974
No 476
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.97 E-value=2.4e+02 Score=27.87 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 90 WINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+..++.+|...|..++|++++......
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 667778888888888999888888775
No 477
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.77 E-value=2.2e+02 Score=27.39 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=13.3
Q ss_pred HHHHHHHhccHHHHHHHHHHH
Q 036703 59 YIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 59 ~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++..|...++|+.|...|-++
T Consensus 511 La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred HHHHHHHccChHHHHHHHHhc
Confidence 566666666666666666544
No 478
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=52.67 E-value=1.1e+02 Score=23.82 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-------------
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY------------- 85 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------------- 85 (365)
.....+.......||++.|-+.|--.+...+- ...|.-=+.+..+.+......+.++......|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Q ss_pred ----------------chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 86 ----------------NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 86 ----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
-..+|..+.....+....+++.++.+++-+.+......+.+.+|..+|.++.
T Consensus 122 ~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L 189 (199)
T PF04090_consen 122 APVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCHL 189 (199)
T ss_pred cccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
No 479
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=51.99 E-value=2.5e+02 Score=27.85 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703 103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180 (365)
Q Consensus 103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 180 (365)
.+.-.+.|.+.++...-.+ ..+|..-..-+. .+|++-.+.+++.++++........+.|...+++....|-
T Consensus 1212 ld~~~e~y~el~kw~d~~d----sK~~~~a~~ha~---~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASD----SKVWQIAKKHAK---ALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCC----chheehhHHHHH---HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 3445566666666622222 455554444455 7889999999999999865554445677777777776664
No 480
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=51.87 E-value=2.1e+02 Score=27.00 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHH
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYL 318 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al 318 (365)
..+....|.-....|++++|..+|.-+-
T Consensus 414 ~~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 414 REIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3455555666667788888888887764
No 481
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=51.66 E-value=56 Score=22.96 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=15.7
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703 92 NFADFEMKMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 92 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
.+|..+...|+.++|...|-+|+.. .|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V-~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKV-CPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHT-SSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh-CCC
Confidence 3444555556666666666666666 555
No 482
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.38 E-value=4.6e+02 Score=30.68 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS 337 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 337 (365)
.+++..-|.+..+.|+.++|-..|..|++++-..+..|..+|.....
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67788889999999999999999999999998889999999876544
No 483
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=51.33 E-value=30 Score=17.00 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCcchHHHHHHHHHHHhh
Q 036703 311 RKLYEKYLEWSPENCYAWSKYTELEKS 337 (365)
Q Consensus 311 ~~~~~~al~~~p~~~~~~~~~~~~~~~ 337 (365)
.++-..++..+|.|..+|...-.+...
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 456678888999999999877665543
No 484
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.33 E-value=63 Score=20.41 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCCchhhhHHH
Q 036703 225 RVREVYERAIANVPPAEEKRYWQ 247 (365)
Q Consensus 225 ~A~~~~~~~~~~~p~~~~~~~~~ 247 (365)
+|++.+.+++...|+++....++
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~yr 53 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLIYE 53 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHHHH
Confidence 34444445555677776544333
No 485
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=50.25 E-value=1.5e+02 Score=29.52 Aligned_cols=110 Identities=8% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCchhhhHHHHhHHHHHHHHHHHh---hccCC-hhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHH
Q 036703 237 VPPAEEKRYWQRYIYLWINYALYKE---VDAGD-LERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK 312 (365)
Q Consensus 237 ~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 312 (365)
.++++ +..|..+..+.. ...+. ....+.++++++....+.....-++.+...+.. +.....+.+++.
T Consensus 29 ~~~DP--------l~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d 99 (974)
T KOG1166|consen 29 AGNDP--------LDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAED 99 (974)
T ss_pred cCCCc--------hhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHH
Q ss_pred HHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 313 LYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 313 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
+|..+... .+....++..++..+.+.+.+.+|..+|+.+++..
T Consensus 100 ~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~ 144 (974)
T KOG1166|consen 100 FFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNK 144 (974)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 486
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.71 E-value=78 Score=21.28 Aligned_cols=34 Identities=12% Similarity=-0.112 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL 87 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 87 (365)
...-.++-+|.+.|+.+.|..-|+.--...|.+.
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 3444556666666666666666666555666443
No 487
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=49.70 E-value=93 Score=22.20 Aligned_cols=122 Identities=10% Similarity=0.046 Sum_probs=64.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchH
Q 036703 26 YIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD 104 (365)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 104 (365)
....+...+.+.....+++.++..++. ......++.++.+.+ ..+....+.. .++. --.-..+.+..+.+-++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~-yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN----KSNH-YDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh----cccc-CCHHHHHHHHHHcCcHH
Confidence 344445567788888888888877655 456666777776543 3444455442 1111 11222344445566666
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703 105 RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175 (365)
Q Consensus 105 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 175 (365)
++.-+|.+.-.. ..+.. +.. ...++++.|++++.+.. + .++|...+...
T Consensus 87 ~~~~l~~k~~~~---------~~Al~----~~l--~~~~d~~~a~~~~~~~~-----~--~~lw~~~~~~~ 135 (140)
T smart00299 87 EAVELYKKDGNF---------KDAIV----TLI--EHLGNYEKAIEYFVKQN-----N--PELWAEVLKAL 135 (140)
T ss_pred HHHHHHHhhcCH---------HHHHH----HHH--HcccCHHHHHHHHHhCC-----C--HHHHHHHHHHH
Confidence 666666554222 11111 112 02366777777766521 1 45777666544
No 488
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.51 E-value=1.6e+02 Score=24.93 Aligned_cols=112 Identities=12% Similarity=0.061 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
...+++...+.+|. +.|+-+.|.+.+.+.....-. ....++....+.+..-.++..-+. ..+++|..++++.-.-
T Consensus 102 ev~ea~~~kaeYyc---qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~-~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 102 EVREAMLRKAEYYC---QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT-ESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH-HHHHHHHHHHHhCCCh
Confidence 34667777777777 777777777777665542211 112344444444444444443211 1223444444443221
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
...| ..-...|.......++.+|-.+|-.++....+.
T Consensus 178 eRrN-RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 178 ERRN-RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred hhhh-hHHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 1111 112223444456788999999999988876654
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=46.64 E-value=1.5e+02 Score=26.30 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-----chhhhHHHHhHHHHHHHHHHH--hhccCC-----hhHHHHHHHHHHhcc
Q 036703 214 IRLEERVGNQERVREVYERAIANVPP-----AEEKRYWQRYIYLWINYALYK--EVDAGD-----LERTRDVYRTLFIFY 281 (365)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~a~~~~~~a~~~~ 281 (365)
|.-+...|++.+|+..|+.++...|- ..+......++.+-..|...+ |..... .+.....++-+.-
T Consensus 211 gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAY-- 288 (422)
T PF06957_consen 211 GYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAY-- 288 (422)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHH--
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH--
Confidence 44456789999999999999876443 222222333344433333322 122222 1222222222211
Q ss_pred ccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703 282 FSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN 324 (365)
Q Consensus 282 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 324 (365)
.+...+.|. .-....-....++.++|..|-.+-+|.|++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 111111133 1222333344568899999999999999998843
No 490
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=45.69 E-value=36 Score=28.40 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=12.1
Q ss_pred hCCCccHHHHHHHHHhhCc
Q 036703 304 LGNIDPCRKLYEKYLEWSP 322 (365)
Q Consensus 304 ~~~~~~A~~~~~~al~~~p 322 (365)
.|..-+|+..|..|+++.|
T Consensus 32 ~G~l~dai~fYR~AlqI~~ 50 (366)
T KOG2997|consen 32 DGSLYDAINFYRDALQIVP 50 (366)
T ss_pred cCcHHHHHHHHHhhhcCCc
Confidence 4566666666666666665
No 491
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.28 E-value=3.3e+02 Score=27.37 Aligned_cols=14 Identities=14% Similarity=0.012 Sum_probs=10.2
Q ss_pred ccchhHHHHHHHHH
Q 036703 141 NCKETDRARCIYKF 154 (365)
Q Consensus 141 ~~~~~~~A~~~~~~ 154 (365)
.++++++|+..+.+
T Consensus 913 hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 913 HLKRYEKALRHLSA 926 (928)
T ss_pred hhCCHHHHHHHHHh
Confidence 56788888877654
No 492
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.99 E-value=2.9e+02 Score=26.55 Aligned_cols=187 Identities=12% Similarity=0.001 Sum_probs=0.0
Q ss_pred hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH---hccCCCch-----hHHHHHHHHHHHHHcCCchhhhHHHH
Q 036703 118 LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA---LDRIPKGR-----AEDLYRKFLAFEKQYGDREGIEDAIA 189 (365)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---l~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (365)
+|.. ..+-+...++|. ..|++++|+++--++ +..++.+. .......|+......-...+....+-
T Consensus 55 F~er----~~AaL~~SKVyy---~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD 127 (929)
T KOG2062|consen 55 FPER----QLAALLASKVYY---YLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPID 127 (929)
T ss_pred Cchh----HHHHHHHHHHHH---HHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCC
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhH
Q 036703 190 GKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER 269 (365)
Q Consensus 190 ~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (365)
++-+.+.+++++.+-++.+.|..+|-... -+....+++++-...+..... .+++.....+...+..+.+.
T Consensus 128 ~rL~~iv~rmi~kcl~d~e~~~aiGia~E-----~~rld~ie~Ail~~d~~~~~~-----~yll~l~~s~v~~~efR~~v 197 (929)
T KOG2062|consen 128 QRLRDIVERMIQKCLDDNEYKQAIGIAFE-----TRRLDIIEEAILKSDSVIGNL-----TYLLELLISLVNNREFRNKV 197 (929)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHHhh-----hhhHHHHHHHhccccccchHH-----HHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHH
Q 036703 270 TRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYT 332 (365)
Q Consensus 270 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 332 (365)
-+.++...+.. |.|++ ....+++.-..+.+.+..++++.++ .++.......+
T Consensus 198 lr~lv~~y~~~--------~~PDy-~~vc~c~v~Ldd~~~va~ll~kL~~--e~~~llayQIA 249 (929)
T KOG2062|consen 198 LRLLVKTYLKL--------PSPDY-FSVCQCYVFLDDAEAVADLLEKLVK--EDDLLLAYQIA 249 (929)
T ss_pred HHHHHHHHccC--------CCCCe-eeeeeeeEEcCCHHHHHHHHHHHHh--cchhhhHHHHH
No 493
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.86 E-value=2.2e+02 Score=24.99 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=38.2
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
..+.-.. ..++|..|.++|+......|.......+..+...+..-..++ ..+|...++..+..
T Consensus 136 ~~a~~l~---n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd------~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELF---NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFD------HKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccC------HHHHHHHHHHHHHH
Confidence 3444455 789999999999999886555432223333333333222222 34688888877764
No 494
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.72 E-value=1.9e+02 Score=24.05 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703 24 NNYIRMEENLGNVAGARQIFERWMHWMPD---------HEGWLSYIKFKLRYNEVQRARHIFE 77 (365)
Q Consensus 24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~A~~~~~ 77 (365)
..+++-..+.+++++|+..|.+.+....+ ......+.+++.+.|++..-.+...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 56677777888999999999999865221 4466778888888888766555443
No 495
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=42.27 E-value=79 Score=22.49 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHH
Q 036703 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELE 335 (365)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 335 (365)
+....+-.-.+..-+.+.|..+|+..++.+|++..+...+....
T Consensus 77 EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 77 EALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
No 496
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.57 E-value=72 Score=21.78 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc
Q 036703 299 EMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE 340 (365)
Q Consensus 299 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 340 (365)
-+....|++..|.+...++-+..++.+-.+..-+......||
T Consensus 67 l~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 67 LIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 334457999999999999977655444444444555555553
No 497
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.36 E-value=2.2e+02 Score=23.78 Aligned_cols=109 Identities=10% Similarity=-0.020 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
...++|.++|.+|. +.++.+.+.+...+.+..... ....+++..-+.+..-.|+..- +++.++.....++.
T Consensus 113 e~~ea~~n~aeyY~---qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~v-----V~e~lE~~~~~iEk 184 (412)
T COG5187 113 EGSEADRNIAEYYC---QIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKV-----VEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHH-----HHHHHHHHHHHHHh
Confidence 44789999999999 888888888887776653222 1124566666666656665432 22344444444444
Q ss_pred CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 203 NPMNY---DTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 203 ~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
..+-. ..-...|-......++.+|-.++..++....+.
T Consensus 185 GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 185 GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 33221 111223444556778999999999988776654
No 498
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=39.11 E-value=2.3e+02 Score=26.11 Aligned_cols=123 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHh--hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh
Q 036703 87 LSAWINFADFEMK--MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA 164 (365)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 164 (365)
|.+...+|++..- ...-..++.+|.+++....-.-.......|..+|.++. +.+++.+|+...-.+-.......
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~y---R~~~~~eA~~~Wa~aa~Vi~~Yn- 352 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYY---RHKRYREALRSWAEAADVIRKYN- 352 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH---HTT-HHHHHHHHHHHHHHHTTSB-
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHH---HHHHHHHHHHHHHHHHHHHHHcc-
Q ss_pred HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC------------------------CCCHHHHHHHHHHHHHh
Q 036703 165 EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN------------------------PMNYDTWFDYIRLEERV 220 (365)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~------------------------p~~~~~~~~~~~~~~~~ 220 (365)
-..+.+++-+..++-|-++.-..++.. ..+++.+..+.++|-..
T Consensus 353 ------------Y~reDeEiYKEfleIAneLiP~~lk~~~~~~~~~~e~~~e~~~~~~~~~~il~Dpecfa~lLrFYDgI 420 (618)
T PF05053_consen 353 ------------YSREDEEIYKEFLEIANELIPNVLKSESSGHSARSERHREDSPITYQAGSILRDPECFANLLRFYDGI 420 (618)
T ss_dssp --------------GGGHHHHHHHHHHHHTHHHHHHHHHHCHHHT----------------GGGG-HHHHHHHHHHHHHH
T ss_pred ------------cCccHHHHHHHHHHHHHHHHHHHHHhhhcccCccccccccccccccchhhhccCHHHHHHHHHHHhhc
Q ss_pred CCHHH
Q 036703 221 GNQER 225 (365)
Q Consensus 221 ~~~~~ 225 (365)
-.|++
T Consensus 421 C~WEE 425 (618)
T PF05053_consen 421 CKWEE 425 (618)
T ss_dssp HHHHT
T ss_pred eeccc
No 499
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=39.01 E-value=1.4e+02 Score=21.03 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=46.3
Q ss_pred HHHHhCCCchHHHHHHHHHHHhcCChhH----HHHHHHHHHh----------------hCCC---hHHHHHHHHHHHHhc
Q 036703 11 RVVTLSPRVDQLWNNYIRMEENLGNVAG----ARQIFERWMH----------------WMPD---HEGWLSYIKFKLRYN 67 (365)
Q Consensus 11 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~----A~~~~~~al~----------------~~p~---~~~~~~~~~~~~~~~ 67 (365)
.+...+|.++.+|-.++.-.+..|+.-. |+.=|.|.+. ..|+ ......++......|
T Consensus 27 ~vaa~~P~ss~aWA~LAe~al~~g~~v~AYAyARTGYHRGLD~LRr~GWkG~GPVPw~HePNrGfLRal~aLa~AA~~IG 106 (129)
T PF11349_consen 27 EVAAAHPASSLAWAALAEEALAAGRPVTAYAYARTGYHRGLDQLRRNGWKGHGPVPWSHEPNRGFLRALAALARAAQAIG 106 (129)
T ss_pred HHHHHCCCchHHHHHHHHHHHhCCCchhhhhhhhccccccHHHHHHCCCCCCCCCCCccCCccHHHHHHHHHHHHHHHhC
Confidence 4556689988999999988888886544 4444445443 2244 244455566666677
Q ss_pred cHHHHHHHHHHHHHhCC
Q 036703 68 EVQRARHIFERLVQCHP 84 (365)
Q Consensus 68 ~~~~A~~~~~~~l~~~p 84 (365)
+.+++..+.+-+...+|
T Consensus 107 E~dE~~Rc~~~L~Dsdp 123 (129)
T PF11349_consen 107 ETDEYDRCRQFLRDSDP 123 (129)
T ss_pred ChhHHHHHHHHHHhCCH
Confidence 77766666555555554
No 500
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.75 E-value=1e+02 Score=19.46 Aligned_cols=13 Identities=0% Similarity=-0.025 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHh
Q 036703 3 DHGRNAWDRVVTL 15 (365)
Q Consensus 3 ~~A~~~~~~~l~~ 15 (365)
.+|..++.++++.
T Consensus 4 ~~A~~l~~~Ave~ 16 (75)
T cd02677 4 EQAAELIRLALEK 16 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
Done!