Query 036703
Match_columns 365
No_of_seqs 401 out of 1367
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 07:13:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-40 5.7E-45 286.2 38.9 326 2-361 15-374 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-39 3.9E-44 281.0 40.4 306 25-356 4-336 (388)
3 2y4t_A DNAJ homolog subfamily 100.0 4.9E-36 1.7E-40 263.3 37.6 331 4-357 10-361 (450)
4 2y4t_A DNAJ homolog subfamily 100.0 1.3E-35 4.6E-40 260.5 39.5 329 1-360 41-416 (450)
5 2xpi_A Anaphase-promoting comp 100.0 3.6E-36 1.2E-40 273.5 33.2 331 1-361 215-585 (597)
6 3ieg_A DNAJ homolog subfamily 100.0 1E-34 3.5E-39 247.1 38.8 316 19-357 2-338 (359)
7 3ieg_A DNAJ homolog subfamily 100.0 2.3E-34 8E-39 244.9 38.9 309 1-340 18-355 (359)
8 3fp2_A TPR repeat-containing p 100.0 4.9E-35 1.7E-39 262.7 35.6 328 1-357 40-494 (537)
9 2ooe_A Cleavage stimulation fa 100.0 4.7E-34 1.6E-38 255.6 34.6 331 8-356 1-456 (530)
10 2gw1_A Mitochondrial precursor 100.0 1.4E-33 4.9E-38 251.7 34.3 324 1-356 21-446 (514)
11 2gw1_A Mitochondrial precursor 100.0 1.2E-33 4E-38 252.3 32.9 331 1-361 54-484 (514)
12 2ooe_A Cleavage stimulation fa 100.0 4.7E-33 1.6E-37 249.0 35.4 322 1-357 27-495 (530)
13 2xpi_A Anaphase-promoting comp 100.0 8.2E-33 2.8E-37 251.4 34.4 301 2-336 288-595 (597)
14 3hym_B Cell division cycle pro 100.0 8.6E-33 2.9E-37 232.5 31.4 308 9-342 11-322 (330)
15 1fch_A Peroxisomal targeting s 100.0 1.1E-32 3.9E-37 235.5 24.3 293 29-355 34-360 (368)
16 4e6h_A MRNA 3'-END-processing 100.0 4.1E-31 1.4E-35 237.9 34.9 348 4-364 50-544 (679)
17 4g1t_A Interferon-induced prot 100.0 4.5E-31 1.5E-35 233.2 31.3 331 1-361 66-465 (472)
18 3fp2_A TPR repeat-containing p 100.0 6.3E-31 2.1E-35 236.0 32.6 311 19-357 24-410 (537)
19 3hym_B Cell division cycle pro 100.0 1.7E-30 5.6E-35 218.6 30.9 288 45-361 13-305 (330)
20 1fch_A Peroxisomal targeting s 100.0 5.4E-31 1.9E-35 225.1 25.7 295 1-321 40-360 (368)
21 4eqf_A PEX5-related protein; a 100.0 3.5E-31 1.2E-35 226.0 23.9 282 41-355 48-357 (365)
22 4e6h_A MRNA 3'-END-processing 100.0 1.7E-29 5.7E-34 227.4 33.9 323 2-359 82-575 (679)
23 4eqf_A PEX5-related protein; a 100.0 1.2E-30 4E-35 222.8 24.7 287 7-319 48-355 (365)
24 3cv0_A Peroxisome targeting si 100.0 4.9E-29 1.7E-33 209.3 25.1 277 19-323 20-318 (327)
25 3cv0_A Peroxisome targeting si 100.0 1.3E-29 4.4E-34 212.8 21.3 270 53-357 21-318 (327)
26 4g1t_A Interferon-induced prot 100.0 6.1E-27 2.1E-31 206.7 36.9 312 20-357 51-404 (472)
27 2h6f_A Protein farnesyltransfe 100.0 5E-28 1.7E-32 205.2 26.3 259 13-302 90-364 (382)
28 2ond_A Cleavage stimulation fa 100.0 5.8E-28 2E-32 200.9 26.1 273 16-332 4-304 (308)
29 2h6f_A Protein farnesyltransfe 100.0 4.8E-28 1.7E-32 205.3 25.0 256 47-338 90-366 (382)
30 2uy1_A Cleavage stimulation fa 100.0 1.3E-26 4.3E-31 203.5 31.2 321 1-351 10-380 (493)
31 2ond_A Cleavage stimulation fa 100.0 4.9E-27 1.7E-31 195.3 26.7 241 84-358 5-274 (308)
32 2pl2_A Hypothetical conserved 100.0 1.2E-26 4.2E-31 182.6 22.8 199 17-234 2-212 (217)
33 3u4t_A TPR repeat-containing p 100.0 5.2E-26 1.8E-30 185.8 24.2 257 20-339 3-269 (272)
34 2uy1_A Cleavage stimulation fa 99.9 1E-24 3.5E-29 191.4 33.0 312 1-353 29-412 (493)
35 3u4t_A TPR repeat-containing p 99.9 1.7E-25 5.7E-30 182.8 26.3 240 1-301 18-265 (272)
36 3mkr_A Coatomer subunit epsilo 99.9 1.8E-25 6.2E-30 183.6 24.2 274 29-348 8-288 (291)
37 3uq3_A Heat shock protein STI1 99.9 8.4E-25 2.9E-29 177.1 27.6 242 53-334 5-256 (258)
38 3mkr_A Coatomer subunit epsilo 99.9 1.1E-24 3.9E-29 178.9 27.7 246 2-281 15-265 (291)
39 3sf4_A G-protein-signaling mod 99.9 1.8E-25 6.1E-30 193.3 24.2 309 17-342 6-364 (406)
40 3uq3_A Heat shock protein STI1 99.9 1.7E-24 5.8E-29 175.2 26.3 229 18-282 3-238 (258)
41 2pl2_A Hypothetical conserved 99.9 8.5E-25 2.9E-29 172.1 23.6 198 53-279 5-213 (217)
42 2xm6_A Protein corresponding t 99.9 7.5E-23 2.6E-27 181.2 38.2 309 1-356 58-434 (490)
43 2xm6_A Protein corresponding t 99.9 1.6E-22 5.4E-27 179.2 39.0 311 5-355 26-397 (490)
44 4a1s_A PINS, partner of inscut 99.9 5.3E-24 1.8E-28 184.5 22.8 291 18-324 46-376 (411)
45 3sf4_A G-protein-signaling mod 99.9 9.4E-24 3.2E-28 182.5 23.8 296 1-313 24-369 (406)
46 3ro2_A PINS homolog, G-protein 99.9 1.1E-23 3.9E-28 177.0 23.5 286 20-321 5-333 (338)
47 2ho1_A Type 4 fimbrial biogene 99.9 2.9E-23 1E-27 167.5 24.9 211 14-242 30-244 (252)
48 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.3E-24 1.1E-28 175.3 19.4 241 1-274 20-269 (275)
49 2q7f_A YRRB protein; TPR, prot 99.9 1.2E-23 4.1E-28 168.7 22.1 205 20-242 23-228 (243)
50 2vq2_A PILW, putative fimbrial 99.9 7.3E-23 2.5E-27 162.1 25.7 210 15-242 3-217 (225)
51 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.6E-23 8.8E-28 170.0 23.7 249 30-348 15-269 (275)
52 3ro2_A PINS homolog, G-protein 99.9 2.5E-23 8.4E-28 175.0 23.3 294 54-356 6-334 (338)
53 2q7f_A YRRB protein; TPR, prot 99.9 3.5E-23 1.2E-27 166.0 22.8 203 1-221 38-241 (243)
54 4abn_A Tetratricopeptide repea 99.9 2.3E-23 7.8E-28 183.1 23.1 212 2-232 84-317 (474)
55 4a1s_A PINS, partner of inscut 99.9 1.7E-23 5.7E-28 181.4 21.7 295 53-356 48-374 (411)
56 1ouv_A Conserved hypothetical 99.9 1.8E-21 6.1E-26 159.0 29.9 234 16-329 2-260 (273)
57 3vtx_A MAMA; tetratricopeptide 99.9 2.3E-22 7.8E-27 154.2 21.6 169 54-240 6-174 (184)
58 3vtx_A MAMA; tetratricopeptide 99.9 1.9E-22 6.5E-27 154.6 20.9 173 18-208 3-176 (184)
59 2ho1_A Type 4 fimbrial biogene 99.9 2.1E-21 7.3E-26 156.5 25.9 194 1-212 52-248 (252)
60 2vq2_A PILW, putative fimbrial 99.9 1.9E-21 6.4E-26 153.9 24.9 171 50-238 4-178 (225)
61 3e4b_A ALGK; tetratricopeptide 99.9 1.4E-21 4.9E-26 170.6 24.8 307 1-354 18-351 (452)
62 1ouv_A Conserved hypothetical 99.9 1E-20 3.6E-25 154.4 27.3 227 84-356 3-253 (273)
63 4i17_A Hypothetical protein; T 99.9 1.4E-20 4.8E-25 149.3 27.0 203 17-242 4-215 (228)
64 4abn_A Tetratricopeptide repea 99.9 6.3E-22 2.2E-26 173.9 20.0 218 100-350 81-317 (474)
65 3ulq_A Response regulator aspa 99.9 1.3E-20 4.3E-25 161.7 24.9 296 1-321 27-369 (383)
66 4i17_A Hypothetical protein; T 99.9 4.2E-20 1.4E-24 146.6 24.8 216 53-336 7-225 (228)
67 4gyw_A UDP-N-acetylglucosamine 99.9 2.7E-21 9.1E-26 176.4 19.8 173 14-204 3-176 (723)
68 3ulq_A Response regulator aspa 99.9 3.7E-20 1.3E-24 158.8 25.6 303 28-356 20-370 (383)
69 3nf1_A KLC 1, kinesin light ch 99.9 5.3E-21 1.8E-25 159.0 17.6 256 82-356 22-309 (311)
70 3dra_A Protein farnesyltransfe 99.9 4E-19 1.4E-23 144.9 27.6 222 3-241 50-293 (306)
71 4gyw_A UDP-N-acetylglucosamine 99.9 9.8E-21 3.4E-25 172.6 19.2 174 49-240 4-178 (723)
72 1hz4_A MALT regulatory protein 99.9 8.6E-19 2.9E-23 149.8 30.1 312 20-357 14-352 (373)
73 3nf1_A KLC 1, kinesin light ch 99.9 3.1E-20 1.1E-24 154.4 20.2 249 53-323 27-310 (311)
74 3e4b_A ALGK; tetratricopeptide 99.9 2.4E-19 8.3E-24 156.5 24.8 304 2-355 54-422 (452)
75 3qky_A Outer membrane assembly 99.8 1.8E-19 6.2E-24 146.0 20.7 196 48-282 9-226 (261)
76 3qky_A Outer membrane assembly 99.8 3.1E-19 1.1E-23 144.6 20.2 207 13-224 8-249 (261)
77 3q15_A PSP28, response regulat 99.8 2.2E-18 7.4E-23 147.5 26.3 297 1-322 27-367 (378)
78 1xi4_A Clathrin heavy chain; a 99.8 3.2E-18 1.1E-22 160.1 28.9 266 18-346 1103-1376(1630)
79 1qqe_A Vesicular transport pro 99.8 1.8E-19 6.1E-24 148.4 18.7 264 38-335 3-284 (292)
80 1b89_A Protein (clathrin heavy 99.8 2.1E-21 7.3E-26 163.1 6.8 279 2-348 19-305 (449)
81 3edt_B KLC 2, kinesin light ch 99.8 1.8E-19 6E-24 147.6 17.4 229 2-236 17-281 (283)
82 3urz_A Uncharacterized protein 99.8 3.6E-19 1.2E-23 138.9 18.3 153 1-162 19-190 (208)
83 3q15_A PSP28, response regulat 99.8 4.1E-18 1.4E-22 145.8 26.3 311 20-355 10-366 (378)
84 4ga2_A E3 SUMO-protein ligase 99.8 6.9E-20 2.3E-24 134.9 12.9 136 1-144 12-149 (150)
85 3dra_A Protein farnesyltransfe 99.8 1.4E-17 4.8E-22 135.8 27.5 244 63-335 42-303 (306)
86 2pzi_A Probable serine/threoni 99.8 1.1E-19 3.6E-24 166.6 16.3 186 15-222 389-583 (681)
87 1qqe_A Vesicular transport pro 99.8 1.4E-18 4.7E-23 143.1 21.4 246 3-281 2-270 (292)
88 1hz4_A MALT regulatory protein 99.8 2.1E-17 7.1E-22 141.2 28.8 286 54-356 15-324 (373)
89 4ga2_A E3 SUMO-protein ligase 99.8 4E-20 1.4E-24 136.2 10.4 146 25-180 2-149 (150)
90 2pzi_A Probable serine/threoni 99.8 3E-19 1E-23 163.7 18.2 169 1-180 406-583 (681)
91 3as5_A MAMA; tetratricopeptide 99.8 1.6E-18 5.6E-23 132.5 18.5 170 20-241 8-178 (186)
92 3as5_A MAMA; tetratricopeptide 99.8 1.8E-18 6.2E-23 132.2 18.4 154 1-162 23-177 (186)
93 3urz_A Uncharacterized protein 99.8 2.5E-18 8.5E-23 134.1 18.8 131 19-157 3-152 (208)
94 3dss_A Geranylgeranyl transfer 99.8 3.9E-16 1.3E-20 127.9 28.6 230 3-242 47-310 (331)
95 2yhc_A BAMD, UPF0169 lipoprote 99.8 2E-17 6.7E-22 130.8 20.1 157 1-162 19-217 (225)
96 2yhc_A BAMD, UPF0169 lipoprote 99.8 6.2E-17 2.1E-21 127.9 22.9 191 19-241 3-218 (225)
97 1xi4_A Clathrin heavy chain; a 99.8 3E-16 1E-20 147.0 30.2 123 209-356 1223-1347(1630)
98 4gco_A Protein STI-1; structur 99.8 4.5E-18 1.5E-22 121.0 14.2 120 11-135 4-124 (126)
99 3edt_B KLC 2, kinesin light ch 99.8 2.1E-17 7.1E-22 135.2 19.6 159 66-237 14-199 (283)
100 2r5s_A Uncharacterized protein 99.8 7.3E-18 2.5E-22 127.9 14.2 169 16-201 2-172 (176)
101 3qou_A Protein YBBN; thioredox 99.8 5.6E-17 1.9E-21 132.9 20.4 172 14-201 111-283 (287)
102 2vsy_A XCC0866; transferase, g 99.8 1.4E-17 4.8E-22 150.1 18.0 155 1-163 4-162 (568)
103 2r5s_A Uncharacterized protein 99.8 3.1E-17 1.1E-21 124.3 16.5 171 83-280 2-173 (176)
104 3gyz_A Chaperone protein IPGC; 99.8 3.9E-18 1.3E-22 124.8 10.7 114 7-121 23-137 (151)
105 3q7a_A Farnesyltransferase alp 99.7 1.1E-15 3.8E-20 125.7 24.4 228 3-240 71-336 (349)
106 3qou_A Protein YBBN; thioredox 99.7 2.8E-16 9.6E-21 128.8 20.2 170 48-235 111-283 (287)
107 1b89_A Protein (clathrin heavy 99.7 1.1E-17 3.7E-22 140.7 11.6 281 1-337 47-340 (449)
108 3q7a_A Farnesyltransferase alp 99.7 4.6E-15 1.6E-19 122.1 26.4 244 70-334 71-346 (349)
109 3dss_A Geranylgeranyl transfer 99.7 3.8E-14 1.3E-18 116.2 31.1 200 31-240 40-271 (331)
110 2vgx_A Chaperone SYCD; alterna 99.7 1E-16 3.4E-21 117.5 13.9 115 6-121 7-122 (148)
111 3gyz_A Chaperone protein IPGC; 99.7 1.5E-17 5.3E-22 121.6 9.3 114 41-162 23-137 (151)
112 2fo7_A Synthetic consensus TPR 99.7 6.4E-16 2.2E-20 111.3 17.6 133 21-161 2-135 (136)
113 4gco_A Protein STI-1; structur 99.7 1.5E-16 5.1E-21 113.1 13.9 118 45-172 4-122 (126)
114 2xcb_A PCRH, regulatory protei 99.7 8.9E-17 3E-21 117.2 12.3 114 7-121 5-119 (142)
115 1p5q_A FKBP52, FK506-binding p 99.7 4.1E-17 1.4E-21 136.7 11.9 149 2-158 129-294 (336)
116 2vsy_A XCC0866; transferase, g 99.7 2E-16 6.8E-21 142.7 17.1 167 33-214 2-169 (568)
117 2ifu_A Gamma-SNAP; membrane fu 99.7 9.6E-16 3.3E-20 127.0 19.8 205 1-241 6-228 (307)
118 2ifu_A Gamma-SNAP; membrane fu 99.7 7.7E-16 2.6E-20 127.6 17.4 239 32-312 3-253 (307)
119 2vgx_A Chaperone SYCD; alterna 99.7 3.1E-16 1E-20 114.9 11.4 118 38-163 5-123 (148)
120 2c2l_A CHIP, carboxy terminus 99.7 4.1E-16 1.4E-20 127.3 13.1 196 17-236 1-199 (281)
121 4f3v_A ESX-1 secretion system 99.7 2.5E-16 8.4E-21 125.4 11.2 199 1-216 21-250 (282)
122 4f3v_A ESX-1 secretion system 99.7 5.3E-16 1.8E-20 123.5 12.6 193 32-242 18-242 (282)
123 2e2e_A Formate-dependent nitri 99.7 1.3E-15 4.4E-20 115.5 14.0 120 1-121 25-148 (177)
124 3upv_A Heat shock protein STI1 99.7 6.8E-15 2.3E-19 104.8 15.6 116 17-137 1-123 (126)
125 2c2l_A CHIP, carboxy terminus 99.7 6.2E-16 2.1E-20 126.3 11.1 193 53-280 4-199 (281)
126 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.1E-14 3.8E-19 113.9 17.6 138 20-163 6-155 (213)
127 1a17_A Serine/threonine protei 99.6 2.2E-14 7.7E-19 107.3 17.7 130 20-157 13-145 (166)
128 2e2e_A Formate-dependent nitri 99.6 8.1E-15 2.8E-19 111.1 15.1 125 31-163 21-149 (177)
129 1p5q_A FKBP52, FK506-binding p 99.6 4.3E-17 1.5E-21 136.6 2.2 141 32-182 125-281 (336)
130 2fo7_A Synthetic consensus TPR 99.6 4.9E-14 1.7E-18 101.3 17.8 135 54-206 2-136 (136)
131 2xcb_A PCRH, regulatory protei 99.6 3E-15 1E-19 109.0 11.1 115 41-163 5-120 (142)
132 2vyi_A SGTA protein; chaperone 99.6 1.3E-14 4.3E-19 103.8 14.0 124 14-145 6-130 (131)
133 2lni_A Stress-induced-phosphop 99.6 1.7E-14 5.9E-19 103.6 14.5 120 16-143 12-132 (133)
134 4h7y_A Dual specificity protei 99.6 1.1E-14 3.9E-19 100.8 12.5 120 201-329 7-132 (161)
135 3rjv_A Putative SEL1 repeat pr 99.6 2.9E-13 9.8E-18 105.6 22.2 179 38-239 4-200 (212)
136 2fbn_A 70 kDa peptidylprolyl i 99.6 3.9E-15 1.3E-19 115.1 11.3 147 2-156 20-184 (198)
137 3q49_B STIP1 homology and U bo 99.6 4.8E-14 1.6E-18 101.9 15.5 123 14-137 3-127 (137)
138 3sz7_A HSC70 cochaperone (SGT) 99.6 4.4E-14 1.5E-18 105.6 14.8 113 16-133 7-120 (164)
139 1na0_A Designed protein CTPR3; 99.6 1.1E-13 3.7E-18 98.0 16.2 117 16-137 4-122 (125)
140 3rjv_A Putative SEL1 repeat pr 99.6 1.7E-13 5.7E-18 107.0 18.4 190 3-214 3-207 (212)
141 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 4E-15 1.4E-19 129.9 10.1 148 2-157 250-414 (457)
142 3mv2_B Coatomer subunit epsilo 99.6 1.3E-12 4.6E-17 105.4 23.8 272 28-355 21-306 (310)
143 1hxi_A PEX5, peroxisome target 99.6 5.9E-14 2E-18 98.8 12.8 100 21-121 18-118 (121)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.1E-13 3.8E-18 108.2 15.7 134 1-157 21-171 (213)
145 1elw_A TPR1-domain of HOP; HOP 99.6 2.9E-13 1E-17 94.7 16.3 114 19-137 3-117 (118)
146 1a17_A Serine/threonine protei 99.6 1.7E-13 5.9E-18 102.4 16.0 116 1-116 28-146 (166)
147 4gcn_A Protein STI-1; structur 99.6 6.9E-14 2.4E-18 99.4 12.9 103 17-120 5-115 (127)
148 1dce_A Protein (RAB geranylger 99.6 2E-13 6.9E-18 121.7 18.8 168 3-180 46-241 (567)
149 3upv_A Heat shock protein STI1 99.6 1.2E-13 4.3E-18 98.1 14.2 99 53-159 4-102 (126)
150 1dce_A Protein (RAB geranylger 99.6 7.4E-14 2.5E-18 124.5 15.6 198 32-239 40-270 (567)
151 1hxi_A PEX5, peroxisome target 99.5 1.1E-13 3.9E-18 97.4 12.8 101 54-162 18-118 (121)
152 2dba_A Smooth muscle cell asso 99.5 4.4E-13 1.5E-17 98.1 16.5 118 15-137 23-144 (148)
153 2lni_A Stress-induced-phosphop 99.5 2.1E-13 7.3E-18 97.7 14.1 121 203-340 12-133 (133)
154 2kck_A TPR repeat; tetratricop 99.5 1E-13 3.4E-18 96.2 11.8 105 16-121 2-110 (112)
155 4gcn_A Protein STI-1; structur 99.5 3.1E-13 1.1E-17 96.0 14.5 106 53-162 8-116 (127)
156 2qfc_A PLCR protein; TPR, HTH, 99.5 1.3E-12 4.4E-17 107.4 20.1 175 16-201 71-265 (293)
157 3mv2_B Coatomer subunit epsilo 99.5 8.6E-13 2.9E-17 106.5 18.4 184 5-209 85-289 (310)
158 3sz7_A HSC70 cochaperone (SGT) 99.5 3.9E-13 1.3E-17 100.4 14.7 104 53-164 11-114 (164)
159 1zu2_A Mitochondrial import re 99.5 2.1E-13 7.3E-18 98.1 12.3 85 2-86 18-124 (158)
160 3rkv_A Putative peptidylprolyl 99.5 5.3E-13 1.8E-17 99.4 14.2 114 19-137 10-143 (162)
161 2fbn_A 70 kDa peptidylprolyl i 99.5 3.9E-14 1.3E-18 109.4 8.2 144 26-179 10-170 (198)
162 2qfc_A PLCR protein; TPR, HTH, 99.5 8.3E-12 2.8E-16 102.6 22.1 178 126-320 75-266 (293)
163 1elr_A TPR2A-domain of HOP; HO 99.5 7.4E-13 2.5E-17 94.5 13.8 115 17-137 1-123 (131)
164 1wao_1 Serine/threonine protei 99.5 1.5E-14 5.1E-19 126.9 5.8 135 19-161 5-153 (477)
165 2xev_A YBGF; tetratricopeptide 99.5 1.4E-12 4.8E-17 93.0 15.0 112 21-137 3-121 (129)
166 1elw_A TPR1-domain of HOP; HOP 99.5 2E-12 6.8E-17 90.4 15.6 112 53-174 4-115 (118)
167 2hr2_A Hypothetical protein; a 99.5 5E-13 1.7E-17 96.4 12.4 101 20-121 11-135 (159)
168 3gw4_A Uncharacterized protein 99.5 1.4E-12 4.8E-17 100.9 16.1 155 1-159 7-177 (203)
169 2vyi_A SGTA protein; chaperone 99.5 1.8E-12 6.3E-17 92.4 15.6 118 53-180 12-129 (131)
170 1na0_A Designed protein CTPR3; 99.5 2E-12 6.8E-17 91.4 15.6 114 53-176 9-122 (125)
171 3u3w_A Transcriptional activat 99.5 1.3E-12 4.3E-17 107.5 16.5 154 1-158 90-266 (293)
172 2kck_A TPR repeat; tetratricop 99.5 6.3E-13 2.2E-17 92.1 12.0 105 50-162 2-110 (112)
173 2if4_A ATFKBP42; FKBP-like, al 99.5 7E-14 2.4E-18 117.1 8.0 143 13-162 172-332 (338)
174 3q49_B STIP1 homology and U bo 99.5 1.5E-12 5.1E-17 93.9 13.7 104 50-161 5-109 (137)
175 1zu2_A Mitochondrial import re 99.5 5.7E-13 1.9E-17 95.9 11.1 90 65-162 14-124 (158)
176 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 8.7E-14 3E-18 121.5 7.2 141 32-182 246-402 (457)
177 3k9i_A BH0479 protein; putativ 99.4 3.7E-13 1.3E-17 94.3 9.0 88 2-89 6-97 (117)
178 1wao_1 Serine/threonine protei 99.4 4.1E-13 1.4E-17 117.7 10.3 111 1-111 21-134 (477)
179 3k9i_A BH0479 protein; putativ 99.4 6.6E-13 2.3E-17 93.0 9.1 89 32-121 2-94 (117)
180 3u3w_A Transcriptional activat 99.4 2.6E-11 8.9E-16 99.6 19.6 176 128-320 77-266 (293)
181 2dba_A Smooth muscle cell asso 99.4 5.9E-12 2E-16 92.0 13.9 112 53-174 28-142 (148)
182 1ihg_A Cyclophilin 40; ppiase 99.4 4.9E-12 1.7E-16 107.1 14.5 124 20-151 223-363 (370)
183 3rkv_A Putative peptidylprolyl 99.4 8.2E-12 2.8E-16 92.9 13.8 103 53-163 11-131 (162)
184 2xev_A YBGF; tetratricopeptide 99.4 1.5E-11 5.3E-16 87.5 14.6 104 55-163 4-110 (129)
185 2hr2_A Hypothetical protein; a 99.4 1.9E-12 6.6E-17 93.3 9.6 108 250-358 11-135 (159)
186 4b4t_Q 26S proteasome regulato 99.4 5E-11 1.7E-15 103.7 20.3 205 20-236 4-245 (434)
187 3ro3_A PINS homolog, G-protein 99.4 9.2E-12 3.2E-16 92.4 12.8 137 20-160 9-160 (164)
188 1elr_A TPR2A-domain of HOP; HO 99.4 1.1E-11 3.9E-16 88.2 12.6 124 206-340 3-127 (131)
189 2kat_A Uncharacterized protein 99.4 1.1E-11 3.8E-16 86.3 12.2 84 3-86 2-86 (115)
190 2if4_A ATFKBP42; FKBP-like, al 99.4 2.7E-12 9.3E-17 107.5 9.9 138 53-207 179-333 (338)
191 3gw4_A Uncharacterized protein 99.3 4.3E-11 1.5E-15 92.5 14.6 162 64-237 3-177 (203)
192 4b4t_Q 26S proteasome regulato 99.3 3.4E-10 1.2E-14 98.4 21.2 212 55-281 6-246 (434)
193 1ihg_A Cyclophilin 40; ppiase 99.3 2.7E-11 9.3E-16 102.5 12.8 108 1-108 238-362 (370)
194 4h7y_A Dual specificity protei 99.3 2.2E-10 7.4E-15 79.7 13.0 105 15-121 8-127 (161)
195 2kat_A Uncharacterized protein 99.2 2E-10 6.7E-15 79.9 12.9 83 37-120 2-85 (115)
196 3ro3_A PINS homolog, G-protein 99.2 1.5E-10 5E-15 85.8 12.7 146 207-356 9-160 (164)
197 1na3_A Designed protein CTPR2; 99.2 1.6E-10 5.5E-15 76.5 11.5 85 17-101 6-91 (91)
198 2l6j_A TPR repeat-containing p 99.2 1.1E-11 3.7E-16 85.7 5.3 94 19-112 3-103 (111)
199 3ma5_A Tetratricopeptide repea 99.1 5.3E-10 1.8E-14 75.5 10.5 71 15-85 2-73 (100)
200 3u64_A Protein TP_0956; tetrat 99.1 8.6E-08 2.9E-12 75.6 23.4 116 159-284 148-273 (301)
201 1na3_A Designed protein CTPR2; 99.1 1.4E-09 4.8E-14 71.9 11.5 80 53-137 9-88 (91)
202 4g26_A Pentatricopeptide repea 99.1 4.6E-08 1.6E-12 86.0 22.8 178 21-218 27-221 (501)
203 2kc7_A BFR218_protein; tetratr 99.1 9.6E-10 3.3E-14 74.0 9.1 89 24-121 4-94 (99)
204 3u64_A Protein TP_0956; tetrat 99.0 2.4E-08 8.4E-13 78.7 17.5 150 4-161 50-272 (301)
205 4g26_A Pentatricopeptide repea 99.0 2.6E-08 8.9E-13 87.5 19.6 148 1-157 41-203 (501)
206 3ma5_A Tetratricopeptide repea 99.0 6.9E-10 2.3E-14 74.9 7.5 67 50-116 3-70 (100)
207 3n71_A Histone lysine methyltr 99.0 6.4E-09 2.2E-13 90.7 15.3 128 27-157 316-463 (490)
208 2l6j_A TPR repeat-containing p 99.0 2.8E-10 9.5E-15 78.5 5.6 98 53-154 4-103 (111)
209 3ly7_A Transcriptional activat 98.9 1.5E-08 5.1E-13 83.4 12.2 118 2-121 215-343 (372)
210 3n71_A Histone lysine methyltr 98.9 3.1E-08 1.1E-12 86.4 14.7 133 215-354 317-464 (490)
211 2kc7_A BFR218_protein; tetratr 98.9 5.5E-09 1.9E-13 70.2 7.8 90 57-162 4-94 (99)
212 3ly7_A Transcriptional activat 98.9 1.3E-07 4.3E-12 78.0 17.0 145 9-162 183-343 (372)
213 1klx_A Cysteine rich protein B 98.9 6.9E-08 2.4E-12 69.2 13.8 109 1-116 10-126 (138)
214 3bee_A Putative YFRE protein; 98.8 5.4E-08 1.8E-12 64.0 10.1 70 16-85 2-75 (93)
215 3bee_A Putative YFRE protein; 98.8 4.8E-08 1.6E-12 64.3 8.9 71 290-361 5-78 (93)
216 1klx_A Cysteine rich protein B 98.8 1.7E-07 5.7E-12 67.2 12.1 112 221-356 9-128 (138)
217 1pc2_A Mitochondria fission pr 98.7 2.8E-07 9.5E-12 65.6 11.6 90 3-92 15-110 (152)
218 1pc2_A Mitochondria fission pr 98.6 6.3E-07 2.2E-11 63.7 10.8 91 67-164 12-106 (152)
219 3qww_A SET and MYND domain-con 98.5 4.1E-07 1.4E-11 78.0 9.8 91 65-158 310-411 (433)
220 3qwp_A SET and MYND domain-con 98.4 7.1E-06 2.4E-10 70.5 14.7 110 28-137 295-424 (429)
221 3qww_A SET and MYND domain-con 98.4 1.2E-06 4E-11 75.3 9.7 93 263-355 310-412 (433)
222 3qwp_A SET and MYND domain-con 98.4 2.7E-06 9.1E-11 73.2 10.6 93 63-158 297-400 (429)
223 2v5f_A Prolyl 4-hydroxylase su 98.3 5.5E-06 1.9E-10 55.8 9.9 75 20-94 5-87 (104)
224 2v5f_A Prolyl 4-hydroxylase su 98.2 2E-05 6.9E-10 53.0 10.3 75 54-133 6-87 (104)
225 1nzn_A CGI-135 protein, fissio 98.1 0.00011 3.7E-09 50.3 11.4 88 4-91 19-112 (126)
226 1nzn_A CGI-135 protein, fissio 98.0 0.00013 4.6E-09 49.8 11.6 96 64-166 12-111 (126)
227 3txn_A 26S proteasome regulato 97.8 0.0083 2.8E-07 50.4 21.0 180 126-320 19-210 (394)
228 3spa_A Mtrpol, DNA-directed RN 97.7 0.00024 8.2E-09 66.2 11.3 101 20-121 127-235 (1134)
229 3esl_A Checkpoint serine/threo 97.5 0.0066 2.3E-07 45.1 14.1 140 191-336 10-161 (202)
230 3spa_A Mtrpol, DNA-directed RN 97.4 0.0017 5.8E-08 60.7 12.0 97 54-158 128-230 (1134)
231 3o48_A Mitochondria fission 1 97.4 0.0052 1.8E-07 42.2 11.2 89 69-165 23-114 (134)
232 4a1g_A Mitotic checkpoint seri 97.4 0.0055 1.9E-07 43.4 11.7 119 223-355 6-131 (152)
233 3ffl_A Anaphase-promoting comp 97.4 0.0032 1.1E-07 45.1 10.6 113 56-174 23-164 (167)
234 3ffl_A Anaphase-promoting comp 97.3 0.0032 1.1E-07 45.1 10.4 109 23-137 23-166 (167)
235 4gns_B Protein CSD3, chitin bi 97.3 0.0045 1.5E-07 56.6 13.9 123 25-155 253-397 (754)
236 1y8m_A FIS1; mitochondria, unk 97.3 0.0077 2.6E-07 41.9 11.5 78 86-170 38-118 (144)
237 4gns_B Protein CSD3, chitin bi 97.3 0.0054 1.8E-07 56.1 13.7 129 215-351 256-397 (754)
238 3o48_A Mitochondria fission 1 97.3 0.0076 2.6E-07 41.4 11.0 70 20-89 40-114 (134)
239 4a1g_A Mitotic checkpoint seri 97.2 0.011 3.8E-07 41.9 12.2 34 145-178 6-39 (152)
240 3esl_A Checkpoint serine/threo 97.2 0.0096 3.3E-07 44.3 12.1 124 223-355 8-145 (202)
241 1y8m_A FIS1; mitochondria, unk 97.1 0.016 5.5E-07 40.4 11.7 69 20-88 39-112 (144)
242 3txn_A 26S proteasome regulato 97.1 0.1 3.6E-06 43.8 22.0 171 20-202 19-210 (394)
243 2wvi_A Mitotic checkpoint seri 96.9 0.016 5.6E-07 41.7 10.9 114 228-355 4-126 (164)
244 4aez_C MAD3, mitotic spindle c 96.9 0.024 8.3E-07 42.9 12.0 119 223-355 51-180 (223)
245 2wvi_A Mitotic checkpoint seri 96.9 0.016 5.4E-07 41.7 10.3 113 151-281 5-126 (164)
246 3mkq_B Coatomer subunit alpha; 96.7 0.063 2.1E-06 39.2 12.7 46 30-79 15-60 (177)
247 4aez_C MAD3, mitotic spindle c 96.6 0.052 1.8E-06 41.1 11.9 121 191-322 53-181 (223)
248 3mkq_B Coatomer subunit alpha; 96.6 0.085 2.9E-06 38.5 12.5 46 64-114 16-61 (177)
249 1zbp_A Hypothetical protein VP 96.4 0.05 1.7E-06 42.6 11.1 110 1-121 12-133 (273)
250 3mkq_A Coatomer beta'-subunit; 96.2 0.33 1.1E-05 45.5 17.6 78 24-116 633-710 (814)
251 4b4t_R RPN7, 26S proteasome re 96.1 0.069 2.4E-06 45.9 11.6 100 20-120 131-240 (429)
252 2ff4_A Probable regulatory pro 95.8 0.22 7.5E-06 42.1 13.2 86 31-116 126-234 (388)
253 1zbp_A Hypothetical protein VP 95.6 0.19 6.7E-06 39.3 11.0 122 29-161 6-132 (273)
254 4b4t_R RPN7, 26S proteasome re 95.4 0.078 2.7E-06 45.5 9.2 106 207-321 131-238 (429)
255 4b4t_P 26S proteasome regulato 95.4 1.2 4.1E-05 38.4 20.2 200 101-320 30-247 (445)
256 1qsa_A Protein (soluble lytic 95.2 1.7 6E-05 39.1 28.1 291 21-353 38-347 (618)
257 3mkq_A Coatomer beta'-subunit; 95.0 0.67 2.3E-05 43.4 14.9 79 28-110 660-746 (814)
258 2ff4_A Probable regulatory pro 94.9 0.78 2.7E-05 38.7 13.6 57 296-352 176-232 (388)
259 4fhn_B Nucleoporin NUP120; pro 94.7 1.2 4E-05 43.7 16.0 102 12-113 834-964 (1139)
260 4b4t_P 26S proteasome regulato 94.0 2.7 9.3E-05 36.2 22.0 191 33-236 29-247 (445)
261 1ya0_A SMG-7 transcript varian 93.7 0.6 2.1E-05 40.7 10.6 62 55-116 154-215 (497)
262 1wy6_A Hypothetical protein ST 93.6 0.36 1.2E-05 33.3 7.0 63 293-355 93-155 (172)
263 1ya0_A SMG-7 transcript varian 93.3 0.88 3E-05 39.7 11.0 77 23-99 155-232 (497)
264 4b4t_S RPN3, 26S proteasome re 92.9 4.5 0.00015 35.3 16.0 103 16-121 177-303 (523)
265 4b4t_S RPN3, 26S proteasome re 92.8 4.6 0.00016 35.2 15.3 129 28-162 144-303 (523)
266 3lvg_A Clathrin heavy chain 1; 87.5 9.2E-05 3.1E-09 62.7 -18.1 254 18-311 52-324 (624)
267 2wpv_A GET4, UPF0363 protein Y 86.5 12 0.0004 30.4 15.6 43 107-153 113-158 (312)
268 4fhn_B Nucleoporin NUP120; pro 84.6 32 0.0011 33.8 21.8 55 91-157 816-870 (1139)
269 1wy6_A Hypothetical protein ST 83.1 9.5 0.00033 26.5 13.4 112 2-116 23-154 (172)
270 4gq2_M Nucleoporin NUP120; bet 76.5 34 0.0012 32.8 12.3 94 59-160 816-928 (950)
271 3ax2_A Mitochondrial import re 76.5 9.1 0.00031 23.1 5.4 28 25-52 22-49 (73)
272 2wpv_A GET4, UPF0363 protein Y 76.5 29 0.00098 28.1 15.3 27 205-231 132-158 (312)
273 3kae_A CDC27, possible protein 75.9 20 0.00068 26.0 18.1 27 131-160 213-239 (242)
274 3mv2_A Coatomer subunit alpha; 75.9 30 0.001 28.0 10.5 125 213-353 120-255 (325)
275 1qsa_A Protein (soluble lytic 73.4 53 0.0018 29.7 23.0 204 16-235 98-347 (618)
276 4ady_A RPN2, 26S proteasome re 72.1 70 0.0024 30.5 22.6 117 32-157 386-518 (963)
277 4gq2_M Nucleoporin NUP120; bet 70.2 64 0.0022 31.0 12.5 94 213-320 816-926 (950)
278 3ax2_A Mitochondrial import re 69.2 16 0.00055 22.0 5.3 29 58-86 22-50 (73)
279 2w2u_A Hypothetical P60 katani 68.2 5.2 0.00018 24.9 3.2 15 304-318 32-46 (83)
280 2w2u_A Hypothetical P60 katani 67.8 7.2 0.00025 24.3 3.7 17 141-157 31-47 (83)
281 1om2_A Protein (mitochondrial 66.5 13 0.00043 23.8 4.7 28 25-52 25-52 (95)
282 2v6y_A AAA family ATPase, P60 65.7 6.2 0.00021 24.5 3.2 13 305-317 25-37 (83)
283 2v6y_A AAA family ATPase, P60 65.7 8.2 0.00028 24.0 3.7 17 141-157 23-39 (83)
284 3kae_A CDC27, possible protein 65.0 37 0.0013 24.6 20.9 196 32-239 14-240 (242)
285 2ijq_A Hypothetical protein; s 60.6 43 0.0015 23.9 7.9 51 31-81 43-103 (161)
286 3lpz_A GET4 (YOR164C homolog); 60.2 70 0.0024 26.2 21.3 25 125-152 135-159 (336)
287 1v54_E Cytochrome C oxidase po 58.2 33 0.0011 22.3 5.4 61 266-331 25-85 (109)
288 3bu8_A Telomeric repeat-bindin 57.1 60 0.0021 24.5 7.6 65 36-100 88-161 (235)
289 3mkr_B Coatomer subunit alpha; 56.6 78 0.0027 25.6 9.7 125 213-353 108-246 (320)
290 3lpz_A GET4 (YOR164C homolog); 55.6 84 0.0029 25.7 21.2 221 94-338 42-295 (336)
291 1om2_A Protein (mitochondrial 55.2 27 0.00093 22.3 4.7 28 58-85 25-52 (95)
292 4b4t_O 26S proteasome regulato 54.7 74 0.0025 26.7 8.9 104 215-319 84-197 (393)
293 4ady_A RPN2, 26S proteasome re 54.5 1.5E+02 0.0052 28.4 24.0 87 65-158 386-483 (963)
294 1wfd_A Hypothetical protein 15 52.0 14 0.00049 23.5 3.2 14 267-280 12-25 (93)
295 4b4t_O 26S proteasome regulato 51.7 94 0.0032 26.1 9.0 93 61-157 84-197 (393)
296 3t5v_B Nuclear mRNA export pro 51.4 34 0.0012 29.4 6.3 27 328-354 223-249 (455)
297 3bu8_A Telomeric repeat-bindin 50.0 29 0.00098 26.1 4.8 42 297-338 120-161 (235)
298 2rpa_A Katanin P60 ATPase-cont 49.7 19 0.00065 22.0 3.3 26 23-48 15-40 (78)
299 2v6x_A Vacuolar protein sortin 48.3 18 0.00061 22.5 3.2 14 305-318 27-40 (85)
300 2cwy_A Hypothetical protein TT 47.8 51 0.0018 20.9 6.1 52 28-81 9-67 (94)
301 2cpt_A SKD1 protein, vacuolar 47.6 17 0.00059 24.3 3.2 14 267-280 15-28 (117)
302 3lvg_A Clathrin heavy chain 1; 45.5 0.0087 3E-07 51.1 -15.9 142 59-228 176-325 (624)
303 3bqo_A Telomeric repeat-bindin 45.0 20 0.00069 26.5 3.3 42 296-337 122-163 (211)
304 3t5v_B Nuclear mRNA export pro 44.5 1.5E+02 0.0052 25.5 10.8 100 222-324 141-254 (455)
305 3eab_A Spastin; spastin, MIT, 43.6 18 0.00062 22.7 2.5 37 101-157 11-47 (89)
306 2rpa_A Katanin P60 ATPase-cont 43.3 32 0.0011 21.0 3.6 27 90-116 15-41 (78)
307 2crb_A Nuclear receptor bindin 43.2 49 0.0017 20.9 4.3 29 88-116 16-44 (97)
308 4a5x_A MITD1, MIT domain-conta 42.2 40 0.0014 21.0 4.0 12 67-78 30-41 (86)
309 3bqo_A Telomeric repeat-bindin 41.5 35 0.0012 25.2 4.1 41 60-100 124-164 (211)
310 2y69_E Cytochrome C oxidase su 41.2 77 0.0026 21.9 5.4 43 289-331 86-128 (152)
311 2cwy_A Hypothetical protein TT 38.1 76 0.0026 20.1 7.6 60 215-280 9-68 (94)
312 1g1e_B SIN3A; four-helix bundl 38.1 74 0.0025 20.0 7.0 32 68-99 9-40 (89)
313 2p58_C Putative type III secre 37.6 83 0.0028 20.4 5.8 76 33-114 20-96 (116)
314 2dl1_A Spartin; SPG20, MIT, st 35.7 55 0.0019 21.8 4.0 16 101-116 17-32 (116)
315 2ijq_A Hypothetical protein; s 35.6 1.2E+02 0.0041 21.6 8.8 62 216-280 41-104 (161)
316 2uwj_G Type III export protein 34.1 53 0.0018 21.3 3.6 75 34-114 20-95 (115)
317 2cfu_A SDSA1; SDS-hydrolase, l 33.9 1.9E+02 0.0066 26.3 8.7 45 57-101 453-497 (658)
318 3t5x_A PCI domain-containing p 33.5 1.4E+02 0.0048 22.2 6.6 22 61-82 22-43 (203)
319 2pm7_A Protein WEB1, protein t 30.9 2.4E+02 0.0082 23.7 8.2 93 20-112 248-361 (399)
320 3re2_A Predicted protein; meni 27.0 2.7E+02 0.0093 23.1 7.9 23 296-318 301-323 (472)
321 3t5x_A PCI domain-containing p 26.8 2E+02 0.0067 21.4 7.0 37 16-52 8-46 (203)
322 3re2_A Predicted protein; meni 25.9 2.9E+02 0.0098 23.0 9.4 45 72-116 276-325 (472)
323 3efz_A 14-3-3 protein; 14-3-3, 25.5 1.9E+02 0.0066 22.6 6.1 54 103-158 168-226 (268)
324 3efz_A 14-3-3 protein; 14-3-3, 24.3 1.9E+02 0.0063 22.8 5.8 31 250-280 196-226 (268)
325 1wgx_A KIAA1903 protein; MYB D 23.5 93 0.0032 18.7 3.2 42 73-115 16-58 (73)
326 4eef_G F-HB80.4, designed hema 22.0 52 0.0018 19.8 1.9 19 343-361 26-44 (74)
327 2d2s_A Exocyst complex compone 20.7 2.9E+02 0.0098 21.1 9.0 89 26-116 24-120 (235)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-40 Score=286.16 Aligned_cols=326 Identities=15% Similarity=0.147 Sum_probs=200.5
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
+++|...|+++++.+|+++.++..++.++...|++++|...++++++.+|. ..+|..++.++...|++++|+..|++++
T Consensus 15 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 94 (388)
T 1w3b_A 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555 4555555555555555555555555555
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
..+|+++..|..+|.++...|++++|+..|+++++. .|+. ..++..++.++. ..|++++|+..|+++++..|
T Consensus 95 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p 166 (388)
T 1w3b_A 95 RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-NPDL----YCVRSDLGNLLK---ALGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-CTTC----THHHHHHHHHHH---TTSCHHHHHHHHHHHHHHCT
T ss_pred HcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCC
Confidence 555555555555555555555555555555555555 5544 444444555444 44555555555554444444
Q ss_pred Cch--------------------------------hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH
Q 036703 161 KGR--------------------------------AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD 208 (365)
Q Consensus 161 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~ 208 (365)
... ....+..++..+...|+.+ +|+..|++++..+|++..
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD--------RAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT--------HHHHHHHHHHHHCTTCHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCcCCHH
Confidence 431 0334444444444444433 466666666666666666
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc
Q 036703 209 TWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM 288 (365)
Q Consensus 209 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 288 (365)
++..++.++...|++++|+..|+++++..|.++. ++..++..+ ...|++++|+..|+++++..
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~~al~~~------- 301 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---------AYCNLANAL-KEKGSVAEAEDCYNTALRLC------- 301 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---------HHHHHHHHH-HHHSCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHH-HHcCCHHHHHHHHHHHHhhC-------
Confidence 6666666666666666666666666666666532 556666665 46677777777777777765
Q ss_pred hh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703 289 EE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 289 ~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
|+ +..+..++.++...|++++|...|+++++.+|++..++..++.++...|++++|...|+++++..| +.++
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~ 374 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFAD 374 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHH
Confidence 33 566777777777777777777777777777777777777777777777888888888887777777 4443
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-39 Score=280.97 Aligned_cols=306 Identities=15% Similarity=0.158 Sum_probs=241.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcch
Q 036703 25 NYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV 103 (365)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 103 (365)
.+|..+.+.|++++|+..++++++.+|+ ...+..++.++...|++++|...+++++..+|.++.+|..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 4678889999999999999999999999 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh
Q 036703 104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG 183 (365)
Q Consensus 104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
++|+..|+++++. .|++ ...|..++.++. ..|++++|+..|+++++..|.. ...+..++.++...|+.+
T Consensus 84 ~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~- 152 (388)
T 1w3b_A 84 QEAIEHYRHALRL-KPDF----IDGYINLAAALV---AAGDMEGAVQAYVSALQYNPDL--YCVRSDLGNLLKALGRLE- 152 (388)
T ss_dssp HHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHSCSSHHHHHHHHHHHHCTTC--THHHHHHHHHHHTTSCHH-
T ss_pred HHHHHHHHHHHHc-Ccch----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHH-
Confidence 9999999999999 9988 899999999999 9999999999999999999986 567888888888888865
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhH------------------
Q 036703 184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRY------------------ 245 (365)
Q Consensus 184 ~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------------------ 245 (365)
+|...|++++..+|++..+|..+|.++...|++++|+..|+++++..|.+.....
T Consensus 153 -------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 153 -------EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp -------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred -------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5667777777777777777777777777777777777777777766666532100
Q ss_pred HH-------HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703 246 WQ-------RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKY 317 (365)
Q Consensus 246 ~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a 317 (365)
+. ....++..++..+ ...|++++|+..|++++... |+ +..+..++.++...|++++|...|+++
T Consensus 226 ~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 226 YLRALSLSPNHAVVHGNLACVY-YEQGLIDLAIDTYRRAIELQ-------PHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTC-------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHhhCcCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00 0012444455554 35566666666666666655 33 556677777777777777777777777
Q ss_pred HhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 318 LEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 318 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
++.+|+++.++..++.++...|++++|...|+++++..|
T Consensus 298 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 777777777777777777777777777777777777666
No 3
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.9e-36 Score=263.34 Aligned_cols=331 Identities=12% Similarity=0.017 Sum_probs=284.5
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703 4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC 82 (365)
Q Consensus 4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 82 (365)
.+...+.+++..+|+++..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++++.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4566788899999999999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH---HHHHHH------------HHHHHhccccchhHH
Q 036703 83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE---QLFVAF------------AKFEEMGCNCKETDR 147 (365)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~------------~~~~~~~~~~~~~~~ 147 (365)
+|+++.++..+|.++...|++++|+..|+++++. .|.+ . ..|..+ |..+. ..|++++
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~ 161 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-NPSE----NEEKEAQSQLIKSDEMQRLRSQALNAF---GSGDYTA 161 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----hhhHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHH
Confidence 9999999999999999999999999999999999 8876 5 565554 55688 9999999
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHH
Q 036703 148 ARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR 227 (365)
Q Consensus 148 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~ 227 (365)
|+..|+++++..|.+ ..++..++.++...|+.+ +|+..|+++++.+|+++.+|..++.++...|++++|+
T Consensus 162 A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 162 AIAFLDKILEVCVWD--AELRELRAECFIKEGEPR--------KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCGG--------GGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCC--hHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999886 678888999999999876 6999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhHHHH---hHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHH
Q 036703 228 EVYERAIANVPPAEEKRYWQR---YIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMEL 302 (365)
Q Consensus 228 ~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~ 302 (365)
..|++++...|.+......-. .+......+..+ ...|++++|+..|++++...|.. |. ...+..++.++.
T Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL-IRDGRYTDATSKYESVMKTEPSI----AEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCCSS----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHHH
Confidence 999999999998864210000 001112336666 58899999999999999988543 32 557889999999
Q ss_pred HhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703 303 CLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL 357 (365)
Q Consensus 303 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 357 (365)
+.|++++|...++++++.+|+++.+|..++.++...|++++|...|+++++..|.
T Consensus 307 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999999999999994
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.3e-35 Score=260.54 Aligned_cols=329 Identities=14% Similarity=0.072 Sum_probs=297.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++
T Consensus 41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhCCcch---HHHHHH------------HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703 80 VQCHPYNL---SAWINF------------ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 80 l~~~p~~~---~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
+..+|++. ..|..+ |..+...|++++|+..|+++++. .|.+ ..++..++.++. ..|+
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~g~ 192 (450)
T 2y4t_A 121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWD----AELRELRAECFI---KEGE 192 (450)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTC
T ss_pred HhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----hHHHHHHHHHHH---HCCC
Confidence 99999888 777666 55699999999999999999999 9888 999999999999 9999
Q ss_pred hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----------
Q 036703 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY----------- 213 (365)
Q Consensus 145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~----------- 213 (365)
+++|+..|+++++..|.+ ...|..++.++...|+.+ +|+..|++++..+|++...+..+
T Consensus 193 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 193 PRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHE--------LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp GGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 678999999999999865 79999999999999999888776
Q ss_pred -HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-H
Q 036703 214 -IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-R 291 (365)
Q Consensus 214 -~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~ 291 (365)
+..+...|++++|...|++++...|.++.. ...++..++.++ ...|++++|+..+++++... |+ +
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~-------p~~~ 329 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEY-----TVRSKERICHCF-SKDEKPVEAIRVCSEVLQME-------PDNV 329 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH-----HHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchHH-----HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC-------cccH
Confidence 889999999999999999999999987531 123667778887 59999999999999999987 54 7
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHH------------HHHhhcc-----chhHHHHHHHH-Hhc
Q 036703 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYT------------ELEKSLD-----ETERARAIFEL-AIA 353 (365)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~~~~g-----~~~~A~~~~~~-a~~ 353 (365)
.+|..+|.++...|++++|...|+++++.+|++..++..++ .++...| +.+++++.|++ +++
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999 4455555 56788999987 888
Q ss_pred CcCCCCC
Q 036703 354 QPILDLP 360 (365)
Q Consensus 354 ~~~~~~p 360 (365)
..|...|
T Consensus 410 ~~pd~~~ 416 (450)
T 2y4t_A 410 WHPDNFQ 416 (450)
T ss_dssp SCGGGCC
T ss_pred hCCCCCC
Confidence 8886555
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-36 Score=273.54 Aligned_cols=331 Identities=10% Similarity=0.051 Sum_probs=302.4
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHH--------------------------------------HHHhcCChhHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIR--------------------------------------MEENLGNVAGARQI 42 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~--------------------------------------~~~~~g~~~~A~~~ 42 (365)
++++|+..|+++++.+|++..+|..++. .+.+.|++++|+.+
T Consensus 215 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 4789999999999999999998887754 33367889999999
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh
Q 036703 43 FERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH 122 (365)
Q Consensus 43 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 122 (365)
|+++++..++...|..++..+...|++++|..+|++++..+|++..++..++.++...|++++|..+++++++. .|.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~- 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEK- 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTS-
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Cccc-
Confidence 99999885568999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred hhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 123 DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
..+|..++.++. ..|++++|+.+|+++++..|.+ ...|..++..+...|+.+ +|+..|++++..
T Consensus 373 ---~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~ 436 (597)
T 2xpi_A 373 ---AVTWLAVGIYYL---CVNKISEARRYFSKSSTMDPQF--GPAWIGFAHSFAIEGEHD--------QAISAYTTAARL 436 (597)
T ss_dssp ---HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHh
Confidence 999999999999 9999999999999999988876 678999999999999866 799999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703 203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF 282 (365)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 282 (365)
.|++..+|..++.++...|++++|...|+++++..|.++. .|..++..+ ...|++++|+..|+++++..|
T Consensus 437 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL---------LLNELGVVA-FNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHhCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998753 788888887 599999999999999999854
Q ss_pred cCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCC
Q 036703 283 SFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLP 360 (365)
Q Consensus 283 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p 360 (365)
..... |+ ..+|..++.++.+.|++++|.+.|+++++.+|+++.+|..++.++...|++++|...|+++++.+| +.|
T Consensus 507 ~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~ 584 (597)
T 2xpi_A 507 KTQSN-EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEI 584 (597)
T ss_dssp HSCCC-SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred ccccc-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCh
Confidence 32211 55 789999999999999999999999999999999999999999999999999999999999999999 444
Q ss_pred c
Q 036703 361 E 361 (365)
Q Consensus 361 ~ 361 (365)
+
T Consensus 585 ~ 585 (597)
T 2xpi_A 585 M 585 (597)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1e-34 Score=247.06 Aligned_cols=316 Identities=12% Similarity=0.026 Sum_probs=282.2
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
++..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++++.+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 5788999999999999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhhhc---CChhhHHHHHHHH------------HHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 98 MKMGEVDRARNVYECAVEIFLA---DDHDEAEQLFVAF------------AKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
...|++++|+..|+++++. .| .+ ..++..+ +.++. ..|++++|+..|+++++..|.+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS-NPSEQEE----KEAESQLVKADEMQRLRSQALDAF---DGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS-CCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCChHHHHHHHHHHHhc-CCcccCh----HHHHHHHHHHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999 88 55 6676666 68888 9999999999999999999986
Q ss_pred hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
..++..++.++...|+.+ .|+..++++++..|.++.++..+|.++...|++++|...|+++++..|.+..
T Consensus 154 --~~~~~~~~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 223 (359)
T 3ieg_A 154 --AELRELRAECFIKEGEPR--------KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223 (359)
T ss_dssp --HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --hHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH
Confidence 678888999999999866 6999999999999999999999999999999999999999999999999864
Q ss_pred hhHHH-H--hHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703 243 KRYWQ-R--YIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKY 317 (365)
Q Consensus 243 ~~~~~-~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a 317 (365)
...+- . .+......+..+ ...|++++|+..+++++...|.. +. ...+..+|.++...|++++|...|+++
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEEL-IRDGRYTDATSKYESVMKTEPSV----AEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCSS----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 21100 0 001122346665 58999999999999999998553 22 356778899999999999999999999
Q ss_pred HhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703 318 LEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL 357 (365)
Q Consensus 318 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 357 (365)
++.+|+++.+|..++.++...|++++|...|+++++.+|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 299 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999993
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.3e-34 Score=244.85 Aligned_cols=309 Identities=13% Similarity=0.069 Sum_probs=282.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHhCC---cchHHHHHH------------HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703 80 VQCHP---YNLSAWINF------------ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 80 l~~~p---~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
++.+| +++..+..+ |.++...|++++|+..++++++. .|.+ +.++..++.++. ..|+
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~---~~~~ 169 (359)
T 3ieg_A 98 LKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWD----AELRELRAECFI---KEGE 169 (359)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTC
T ss_pred HhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc----hHHHHHHHHHHH---HCCC
Confidence 99999 899888887 68899999999999999999999 9988 999999999999 9999
Q ss_pred hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----------
Q 036703 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY----------- 213 (365)
Q Consensus 145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~----------- 213 (365)
+++|+..++++++..|.+ ...+..++.++...|+.+ +|...|+++++.+|++..++..+
T Consensus 170 ~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 170 PRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHE--------LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 678888999998999865 79999999999999998876544
Q ss_pred -HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-H
Q 036703 214 -IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-R 291 (365)
Q Consensus 214 -~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~ 291 (365)
+.++...|++++|...|++++...|.++.. ...++..++..+ ...|++++|+..|+++++.. |+ +
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~-------~~~~ 306 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEY-----TVRSKERICHCF-SKDEKPVEAIRICSEVLQME-------PDNV 306 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH-----HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHH-----HHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhC-------cccH
Confidence 777899999999999999999999997531 123566678777 58999999999999999987 54 7
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc
Q 036703 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE 340 (365)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 340 (365)
.++..+|.++...|++++|...|+++++.+|++..++..++.+....++
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988776553
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.9e-35 Score=262.69 Aligned_cols=328 Identities=12% Similarity=0.096 Sum_probs=281.0
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHH---
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIF--- 76 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~--- 76 (365)
++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|
T Consensus 40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 119 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119 (537)
T ss_dssp CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999 788999998888877777766544
Q ss_pred --------------------------------------------------------------------------------
Q 036703 77 -------------------------------------------------------------------------------- 76 (365)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (365)
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (537)
T 3fp2_A 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA 199 (537)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHH
Confidence
Q ss_pred --------------------------HHHHHhCCcchH-------HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh
Q 036703 77 --------------------------ERLVQCHPYNLS-------AWINFADFEMKMGEVDRARNVYECAVEIFLADDHD 123 (365)
Q Consensus 77 --------------------------~~~l~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 123 (365)
+++++.+|+++. ++..+|.++...|++++|+..|+++++. .|.
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~~~--- 275 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-HPT--- 275 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCC---
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCC---
Confidence 344455665544 4666677788888889999999999888 664
Q ss_pred hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC
Q 036703 124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN 203 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 203 (365)
..++..+|.++. ..|++++|+..|+++++..|.. ..++..++.++...|+++ +|+..|++++..+
T Consensus 276 --~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 276 --PNSYIFLALTLA---DKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYK--------NAKEDFQKAQSLN 340 (537)
T ss_dssp --HHHHHHHHHHTC---CSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHC
T ss_pred --chHHHHHHHHHH---HhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhC
Confidence 678888899998 9999999999999999988876 577888888888888865 6999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc
Q 036703 204 PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS 283 (365)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 283 (365)
|++..+|..++.++...|++++|...|+++++..|.+.. ++..++.++ ...|++++|+..|+++++..|.
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE---------VPTFFAEIL-TDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHhCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999998854 777788887 5899999999999999999876
Q ss_pred CCCcchhHHHHHHHHHHHHHh----------CCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703 284 FSPRMEERRIFKKYIEMELCL----------GNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA 353 (365)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 353 (365)
....+.....+...+.++... |++++|...|+++++.+|+++.++..++.++...|++++|...|+++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 655432344466778888888 9999999999999999999999999999999999999999999999999
Q ss_pred CcCC
Q 036703 354 QPIL 357 (365)
Q Consensus 354 ~~~~ 357 (365)
..|.
T Consensus 491 ~~~~ 494 (537)
T 3fp2_A 491 LART 494 (537)
T ss_dssp HC--
T ss_pred hCCC
Confidence 9883
No 9
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=4.7e-34 Score=255.56 Aligned_cols=331 Identities=18% Similarity=0.303 Sum_probs=264.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Q 036703 8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN 86 (365)
Q Consensus 8 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 86 (365)
+|+++++.+|.+..+|..++.. .+.|++++|+.+|+++++.+|. ..+|..++.++.+.|++++|+.+|++++..+| +
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~ 78 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H 78 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Confidence 4789999999999999999995 7899999999999999999999 89999999999999999999999999999999 7
Q ss_pred hHHHHHHHHHHH-hhcchHHHHH----HHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc---------cchhHHHHHHH
Q 036703 87 LSAWINFADFEM-KMGEVDRARN----VYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN---------CKETDRARCIY 152 (365)
Q Consensus 87 ~~~~~~~~~~~~-~~~~~~~A~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~ 152 (365)
..+|..++.+.. ..|+.+.|++ +|++++.. .+.+ +.+..+|..++.++. . .|++++|+.+|
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~-~g~~-~~~~~~w~~~~~~~~---~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK-IGME-IMSYQIWVDYINFLK---GVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH-TTTS-TTCHHHHHHHHHHHH---HSCCCSSTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH-CCCC-cccHHHHHHHHHHHh---cCCCcccHHHHhHHHHHHHHH
Confidence 889999997654 4677777665 88888887 5543 344899999999987 6 79999999999
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHcCC--------------------------------------c-h---------hh
Q 036703 153 KFALDRIPKGRAEDLYRKFLAFEKQYGD--------------------------------------R-E---------GI 184 (365)
Q Consensus 153 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~--------------------------------------~-~---------~~ 184 (365)
+++++ .|......+|..+..++...|. + . .+
T Consensus 154 ~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 154 QRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 99999 5765445667666554322110 0 0 00
Q ss_pred hH-----------------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------hCCHH-------HHHHHHHHH
Q 036703 185 ED-----------------AIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER-------VGNQE-------RVREVYERA 233 (365)
Q Consensus 185 ~~-----------------~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~~ 233 (365)
-. ....+++..|++++..+|.++.+|..++.++.. .|+++ +|+.+|+++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 00 001256679999999999999999999999876 69887 999999999
Q ss_pred Hh-cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC-Ccc-----------------------
Q 036703 234 IA-NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS-PRM----------------------- 288 (365)
Q Consensus 234 ~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~----------------------- 288 (365)
++ .+|.+. .+|..++.++ ...|++++|+.+|+++++..|... .+|
T Consensus 313 l~~~~p~~~---------~l~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 313 ISTLLKKNM---------LLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp TTTTCSSCH---------HHHHHHHHHH-HHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccH---------HHHHHHHHHH-HhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 98 688874 3888888887 478888888888888888765431 223
Q ss_pred ----hh-HHHHHHHHHHH-HHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 289 ----EE-RRIFKKYIEME-LCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 289 ----~~-~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
|. ..++...+.++ ...|++++|+.+|+++++.+|+++.+|..++.++...|+.++|+.+|++++...|
T Consensus 383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 11 12222223332 2478899999999999999999999999999999999999999999999999876
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=251.70 Aligned_cols=324 Identities=12% Similarity=0.098 Sum_probs=286.7
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|++++..+|+ +.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++
T Consensus 21 ~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578999999999999995 899999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhCCcc-------------------------------------------------------------------------
Q 036703 80 VQCHPYN------------------------------------------------------------------------- 86 (365)
Q Consensus 80 l~~~p~~------------------------------------------------------------------------- 86 (365)
+...|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (514)
T 2gw1_A 100 SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179 (514)
T ss_dssp HHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSS
T ss_pred HhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHH
Confidence 9887632
Q ss_pred ------hHHHHHHHHHHHh---hcchHHHHHHHHHHHhhh------hcCC---hhhHHHHHHHHHHHHHhccccchhHHH
Q 036703 87 ------LSAWINFADFEMK---MGEVDRARNVYECAVEIF------LADD---HDEAEQLFVAFAKFEEMGCNCKETDRA 148 (365)
Q Consensus 87 ------~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A 148 (365)
...+...+..+.. .|++++|+..|+++++.. .|.+ .+....++..+|.++. ..|++++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A 256 (514)
T 2gw1_A 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF---LKNDPLGA 256 (514)
T ss_dssp CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH---HSSCHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH---HCCCHHHH
Confidence 5666777777665 899999999999999830 1221 1445889999999999 99999999
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 036703 149 RCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVRE 228 (365)
Q Consensus 149 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 228 (365)
+..|+++++..|. ...+..++..+...|+.+ .|+..|++++..+|.+..++..++.++...|++++|..
T Consensus 257 ~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 257 HEDIKKAIELFPR---VNSYIYMALIMADRNDST--------EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHHHHHHHHHCCC---HHHHHHHHHHHHTSSCCT--------TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHhhCcc---HHHHHHHHHHHHHCCCHH--------HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999887 678888899998999876 58999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCC
Q 036703 229 VYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNI 307 (365)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 307 (365)
.|+++++..|.+.. .+..++..+ ...|++++|+..++++++.. |+ +..+..+|.++...|++
T Consensus 326 ~~~~~~~~~~~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 326 DFDKAKELDPENIF---------PYIQLACLA-YRENKFDDCETLFSEAKRKF-------PEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHHTCSSCSH---------HHHHHHHHT-TTTTCHHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhChhhHH---------HHHHHHHHH-HHcCCHHHHHHHHHHHHHHc-------ccCHHHHHHHHHHHHHCCCH
Confidence 99999999998753 777788887 58999999999999999887 43 66788899999999999
Q ss_pred ccHHHHHHHHHhhCcchHH------HHHHHHHHHhh---ccchhHHHHHHHHHhcCcC
Q 036703 308 DPCRKLYEKYLEWSPENCY------AWSKYTELEKS---LDETERARAIFELAIAQPI 356 (365)
Q Consensus 308 ~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~---~g~~~~A~~~~~~a~~~~~ 356 (365)
++|...|++++...|++.. ++..++.++.. .|++++|...|+++++..|
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999888754 89999999999 9999999999999998887
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=252.28 Aligned_cols=331 Identities=12% Similarity=0.076 Sum_probs=295.0
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----------------------------
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---------------------------- 52 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------------------------- 52 (365)
++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++++...|.
T Consensus 54 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (514)
T 2gw1_A 54 DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI 133 (514)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999988863
Q ss_pred ----------------------------------------------------hHHHHHHHHHHHH---hccHHHHHHHHH
Q 036703 53 ----------------------------------------------------HEGWLSYIKFKLR---YNEVQRARHIFE 77 (365)
Q Consensus 53 ----------------------------------------------------~~~~~~~~~~~~~---~~~~~~A~~~~~ 77 (365)
...|...+..... .|++++|+..|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred HHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 2344555555554 899999999999
Q ss_pred HHHH-----h---------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703 78 RLVQ-----C---------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK 143 (365)
Q Consensus 78 ~~l~-----~---------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (365)
+++. . .|.++.++..+|.++...|++++|+..|+++++. .|. ..++..++.++. ..|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~-----~~~~~~l~~~~~---~~~ 284 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-FPR-----VNSYIYMALIMA---DRN 284 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-CCC-----HHHHHHHHHHHH---TSS
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-Ccc-----HHHHHHHHHHHH---HCC
Confidence 9999 5 3556789999999999999999999999999999 654 788999999999 999
Q ss_pred hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCH
Q 036703 144 ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQ 223 (365)
Q Consensus 144 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 223 (365)
++++|+..|+++++..|.+ ...+..++.++...|+.+ +|+..|++++..+|.+..++..++.++...|++
T Consensus 285 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNN--SSVYYHRGQMNFILQNYD--------QAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTC--THHHHHHHHHHHHTTCTT--------HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH
T ss_pred CHHHHHHHHHHHhhcCcCC--HHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH
Confidence 9999999999999999886 568888899999999876 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH
Q 036703 224 ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC 303 (365)
Q Consensus 224 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (365)
++|...|+++++..|.+.. ++..++..+ ...|++++|+..|++++...|...........+..+|.++..
T Consensus 355 ~~A~~~~~~~~~~~~~~~~---------~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 355 DDCETLFSEAKRKFPEAPE---------VPNFFAEIL-TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHHHHHHHHHHHHSTTCSH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999998754 777888887 699999999999999999976543211113488999999999
Q ss_pred ---hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703 304 ---LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 304 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
.|++++|...|++++..+|+++.++..++.++...|++++|...|+++++..| +.|+
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~ 484 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TMEE 484 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc-ccHH
Confidence 99999999999999999999999999999999999999999999999999998 4443
No 12
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=4.7e-33 Score=249.04 Aligned_cols=322 Identities=17% Similarity=0.304 Sum_probs=261.8
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHH----------------
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKL---------------- 64 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~---------------- 64 (365)
++++|+.+|+++++.+|.+..+|..++.++.+.|++++|+.+|++++...|+..+|..++.+..
T Consensus 27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999998667777764321
Q ss_pred --------------------------H---------hccHHHHHHHHHHHHHhCCcc--hHHHHHHHHHH----------
Q 036703 65 --------------------------R---------YNEVQRARHIFERLVQCHPYN--LSAWINFADFE---------- 97 (365)
Q Consensus 65 --------------------------~---------~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~---------- 97 (365)
. .|+++.|+.+|+++++ .|.+ ..+|..++.+.
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKK 185 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHH
Confidence 1 4566677777777776 4432 23333332221
Q ss_pred -------------------------------------------------------Hhh----cc----hHHHHHHHHHHH
Q 036703 98 -------------------------------------------------------MKM----GE----VDRARNVYECAV 114 (365)
Q Consensus 98 -------------------------------------------------------~~~----~~----~~~A~~~~~~a~ 114 (365)
... ++ ..+++.+|++++
T Consensus 186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 000 01 124556777777
Q ss_pred hhhhcCChhhHHHHHHHHHHHHHhccc-------cchhH-------HHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHcC
Q 036703 115 EIFLADDHDEAEQLFVAFAKFEEMGCN-------CKETD-------RARCIYKFALD-RIPKGRAEDLYRKFLAFEKQYG 179 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~ 179 (365)
.. .|.+ +.+|..++.++. . .|+++ +|+.+|+++++ ..|.+ ..+|..++.++...|
T Consensus 266 ~~-~p~~----~~~w~~~~~~~~---~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~--~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 266 LV-LGHH----PDIWYEAAQYLE---QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEESRM 335 (530)
T ss_dssp HH-HTTC----HHHHHHHHHHHH---HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC--HHHHHHHHHHHHHTT
T ss_pred Hh-CCCC----HHHHHHHHHHHH---HhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHhcC
Confidence 77 7776 889999999887 6 68877 99999999998 78876 789999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHH
Q 036703 180 DREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL 258 (365)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 258 (365)
+.+ +|+.+|+++++.+|.++ .+|..++.++...|+.++|+.+|+++++..|.+.. ++...+.
T Consensus 336 ~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~---------~~~~~a~ 398 (530)
T 2ooe_A 336 KYE--------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAAL 398 (530)
T ss_dssp CHH--------HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH---------HHHHHHH
T ss_pred CHH--------HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH---------HHHHHHH
Confidence 865 79999999999999985 69999999999999999999999999998877543 3333333
Q ss_pred HHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchH----HHHHHHHH
Q 036703 259 YKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENC----YAWSKYTE 333 (365)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~ 333 (365)
+.....|++++|+.+|+++++.. |+ +.+|..++.++...|++++|+.+|++++...|.++ .+|..++.
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 32125899999999999999998 55 88999999999999999999999999999866544 49999999
Q ss_pred HHhhccchhHHHHHHHHHhcCcCC
Q 036703 334 LEKSLDETERARAIFELAIAQPIL 357 (365)
Q Consensus 334 ~~~~~g~~~~A~~~~~~a~~~~~~ 357 (365)
++...|+.+.+..+++++++..|.
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999998883
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-33 Score=251.44 Aligned_cols=301 Identities=11% Similarity=0.017 Sum_probs=278.2
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
+++|+.+|++++.. |.+..+|..++..+...|++++|+.+|+++++..|+ ..+|..++.++...|++++|..++++++
T Consensus 288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57899999999887 777999999999999999999999999999999998 7899999999999999999999999999
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
...|+++.+|..++.++.+.|++++|+++|+++++. .|.+ ...|..++.++. ..|++++|+++|+++++..|
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQF----GPAWIGFAHSFA---IEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHTCHHHHHHHHHHHHHTTT
T ss_pred hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999 8888 999999999999 99999999999999999988
Q ss_pred CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Q 036703 161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN---- 236 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---- 236 (365)
.+ ...|..++..+...|+.+ +|+..|+++++..|.++.+|..++.++...|++++|...|+++++.
T Consensus 439 ~~--~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 439 GT--HLPYLFLGMQHMQLGNIL--------LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp TC--SHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred cc--hHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 76 578888899998999865 7999999999999999999999999999999999999999999987
Q ss_pred --CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHH
Q 036703 237 --VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY 314 (365)
Q Consensus 237 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 314 (365)
.|.+. ..+|..++..+ ...|++++|+..|+++++..| .++..|..++.++...|++++|.+.|
T Consensus 509 ~~~p~~~--------~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 509 QSNEKPW--------AATWANLGHAY-RKLKMYDAAIDALNQGLLLST------NDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp CCCSGGG--------HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSS------CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccchhhH--------HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34321 34788888887 599999999999999999873 23788999999999999999999999
Q ss_pred HHHHhhCcchHHHHHHHHHHHh
Q 036703 315 EKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 315 ~~al~~~p~~~~~~~~~~~~~~ 336 (365)
+++++.+|+++.++..++.++.
T Consensus 574 ~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 574 HESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999998764
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.6e-33 Score=232.53 Aligned_cols=308 Identities=10% Similarity=0.036 Sum_probs=266.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703 9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL 87 (365)
Q Consensus 9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 87 (365)
....+...|+++..+..++..+...|++++|+..|+++++.+|. ...+..++.++...|++++|...++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 34556667888999999999999999999999999999999999 77888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc-chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHH
Q 036703 88 SAWINFADFEMKMG-EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED 166 (365)
Q Consensus 88 ~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 166 (365)
.+|..+|.++...| ++++|+..|+++++. .|.+ ..+|..+|.++. ..|++++|+..|+++++..|.. ..
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~--~~ 160 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTL-EKTY----GPAWIAYGHSFA---VESEHDQAMAAYFTAAQLMKGC--HL 160 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-CTTC----THHHHHHHHHHH---HHTCHHHHHHHHHHHHHHTTTC--SH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-CCcc----HHHHHHHHHHHH---HccCHHHHHHHHHHHHHhcccc--HH
Confidence 99999999999999 999999999999999 8888 899999999999 9999999999999999999886 45
Q ss_pred HHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHH
Q 036703 167 LYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYW 246 (365)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 246 (365)
.+..++..+...|+.+ +|...|++++..+|++..++..+|.++...|++++|...+++++...|........
T Consensus 161 ~~~~l~~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 232 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSK--------LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232 (330)
T ss_dssp HHHHHHHHHHHTTCHH--------HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred HHHHHHHHHHHHhhHH--------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccc
Confidence 6777888888888865 79999999999999999999999999999999999999999999875321100000
Q ss_pred HHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchH
Q 036703 247 QRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENC 325 (365)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 325 (365)
.....++..++..+ ...|++++|+..|+++++.. |+ +..+..+|.++...|++++|...|+++++.+|+++
T Consensus 233 ~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 233 DKWEPLLNNLGHVC-RKLKKYAEALDYHRQALVLI-------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp TTCCHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred cHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhC-------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 00123778888887 69999999999999999997 44 67889999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhccchh
Q 036703 326 YAWSKYTELE-KSLDETE 342 (365)
Q Consensus 326 ~~~~~~~~~~-~~~g~~~ 342 (365)
.++..++.++ ...|+.+
T Consensus 305 ~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 305 FSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHHhCchh
Confidence 9999999987 5666654
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=1.1e-32 Score=235.48 Aligned_cols=293 Identities=14% Similarity=0.098 Sum_probs=250.5
Q ss_pred HHHhcCChhHHHH-HHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703 29 MEENLGNVAGARQ-IFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE 102 (365)
Q Consensus 29 ~~~~~g~~~~A~~-~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 102 (365)
++...|++++|+. .|++++...|+ ...|..+|..+...|++++|...|+++++.+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4556789999999 99999988876 35689999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHH-------------
Q 036703 103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYR------------- 169 (365)
Q Consensus 103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~------------- 169 (365)
+++|+..|+++++. .|.+ ..++..+|.++. ..|++++|+..|++++...|.........
T Consensus 114 ~~~A~~~~~~al~~-~~~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 114 ELLAISALRRCLEL-KPDN----QTALMALAVSFT---NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred HHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence 99999999999999 9888 999999999999 99999999999999999988764221111
Q ss_pred -HHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHH
Q 036703 170 -KFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM--NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYW 246 (365)
Q Consensus 170 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 246 (365)
.+..+. ..|+ .++|+..|+++++.+|. +..++..+|.++...|++++|+..|++++...|.+..
T Consensus 186 ~~~~~~~-~~~~--------~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 252 (368)
T 1fch_A 186 RILGSLL-SDSL--------FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---- 252 (368)
T ss_dssp CTTHHHH-HHHH--------HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----
T ss_pred HHHHHHh-hccc--------HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH----
Confidence 122222 3443 34799999999999999 8999999999999999999999999999999998753
Q ss_pred HHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch-
Q 036703 247 QRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN- 324 (365)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 324 (365)
++..++..+ ...|++++|+..|++++... |+ +..+..+|.++...|++++|...|+++++..|++
T Consensus 253 -----~~~~l~~~~-~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 253 -----LWNKLGATL-ANGNQSEEAVAAYRRALELQ-------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp -----HHHHHHHHH-HHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHH-HHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 788888887 59999999999999999987 54 7889999999999999999999999999999988
Q ss_pred ----------HHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 325 ----------CYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 325 ----------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
..+|..++.++...|+.++|..+++++++.-
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 8999999999999999999999998877543
No 16
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=4.1e-31 Score=237.87 Aligned_cols=348 Identities=13% Similarity=0.205 Sum_probs=263.8
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc---HHHHHHHHHHH
Q 036703 4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE---VQRARHIFERL 79 (365)
Q Consensus 4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~---~~~A~~~~~~~ 79 (365)
+.+..|++.+..+|.+...|..|+....+.++++.++.+|++++...|. ...|..|+.+..+.|+ ++.+..+|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999 8999999999999999 99999999999
Q ss_pred HHhCC--cchHHHHHHHHHHHhhcch--------HHHHHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHHhc------ccc
Q 036703 80 VQCHP--YNLSAWINFADFEMKMGEV--------DRARNVYECAVEIFLAD-DHDEAEQLFVAFAKFEEMG------CNC 142 (365)
Q Consensus 80 l~~~p--~~~~~~~~~~~~~~~~~~~--------~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~ 142 (365)
+...| .++.+|..++.+..+.++. +..+++|++|+.. .+. + +.+..+|..++.++... ..+
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-vG~~d-~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-CAIFE-PKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH-TTTTC-SSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-hCccc-ccchHHHHHHHHHHHhccccCcHHHH
Confidence 99993 4899999999998876654 4456899999998 665 4 44578999999886510 024
Q ss_pred chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCch----------------------------------------
Q 036703 143 KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDRE---------------------------------------- 182 (365)
Q Consensus 143 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 182 (365)
++++.++.+|++++. .|......+|..|..++...+...
T Consensus 208 ~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred hHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 567889999999996 465444556666655544321100
Q ss_pred -------------------------------hhhH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHH-HH
Q 036703 183 -------------------------------GIED-AIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR-EV 229 (365)
Q Consensus 183 -------------------------------~~~~-~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~-~~ 229 (365)
.+++ ...++.+.+|++++..+|.++++|+.++.++...|+.++|+ .+
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 0000 11234567899999999999999999999999999999996 99
Q ss_pred HHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc-----------cc-----------CCCc
Q 036703 230 YERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY-----------FS-----------FSPR 287 (365)
Q Consensus 230 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-----------~~-----------~~~~ 287 (365)
|++++..+|.+.. +|+.++.+++ ..|++++|+.+|++++... |+ ...+
T Consensus 367 l~rAi~~~P~s~~---------Lwl~~a~~ee-~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 367 LKLGQQCIPNSAV---------LAFSLSEQYE-LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp HHHHHHHCTTCHH---------HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHH---------HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 9999999998742 5555665553 5555666666666655431 10 1112
Q ss_pred c---------------------------h--hHHHHHHHHHHHHHhC-CCccHHHHHHHHHhhCcchHHHHHHHHHHHhh
Q 036703 288 M---------------------------E--ERRIFKKYIEMELCLG-NIDPCRKLYEKYLEWSPENCYAWSKYTELEKS 337 (365)
Q Consensus 288 ~---------------------------~--~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 337 (365)
| | ...+|...+.++...+ +.+.|+++|+++++..|+++.+|..++.++..
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 2 1 1456777777777664 48889999999998888888999999999988
Q ss_pred ccchhHHHHHHHHHhcCcCC-CCCcccc
Q 036703 338 LDETERARAIFELAIAQPIL-DLPEFLW 364 (365)
Q Consensus 338 ~g~~~~A~~~~~~a~~~~~~-~~p~~~~ 364 (365)
.|+.++|+.+|++++...|. +.+..+|
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw 544 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIF 544 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999988772 2344454
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.5e-31 Score=233.21 Aligned_cols=331 Identities=14% Similarity=0.069 Sum_probs=254.5
Q ss_pred ChhhHHHHHHHHHHh---------CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC--------C-hHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTL---------SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--------D-HEGWLSYIKF 62 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~---------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------~-~~~~~~~~~~ 62 (365)
++++|++.|++++++ +|....+|..+|.++...|++++|...+++++++.| . ..++...+..
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 578999999999986 577778899999999999999999999999998633 2 4566666655
Q ss_pred HHH--hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 63 KLR--YNEVQRARHIFERLVQCHPYNLSAWINFADFEMK---MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 63 ~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
+.. .+++++|+..|+++++.+|+++.++..++.++.. .++.++|++.|+++++. .|.+ ..++..++..+.
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-~p~~----~~~~~~l~~~~~ 220 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-NPDN----QYLKVLLALKLH 220 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-CSSC----HHHHHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc-CCcc----hHHHHHHHHHHH
Confidence 444 4689999999999999999999999999988665 46678899999999999 9988 777777765443
Q ss_pred -hccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 036703 138 -MGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRL 216 (365)
Q Consensus 138 -~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~ 216 (365)
+....|++++|...|++++...|.. ..++..++.++...|+.+ +|+..|+++++.+|++..++..+|.+
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPD--------KAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HCC------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchH--------HHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 1115678899999999999999987 678888999999999866 79999999999999999999999988
Q ss_pred HHHh-------------------CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 036703 217 EERV-------------------GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277 (365)
Q Consensus 217 ~~~~-------------------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 277 (365)
+... +.++.|...|++++...|.... .+..+|..+ ...|++++|+..|+++
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~lg~~~-~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR---------VCSILASLH-ALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC---------CHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh---------hhhhHHHHH-HHhccHHHHHHHHHHH
Confidence 7543 3467899999999999998754 677788887 5999999999999999
Q ss_pred HhccccCCCcchh-HHHHHHHHHHH-HHhCCCccHHHHHHHHHhh------------------------CcchHHHHHHH
Q 036703 278 FIFYFSFSPRMEE-RRIFKKYIEME-LCLGNIDPCRKLYEKYLEW------------------------SPENCYAWSKY 331 (365)
Q Consensus 278 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~------------------------~p~~~~~~~~~ 331 (365)
++..++. .. ..++..++.+. ...|++++|+..|++++++ +|+++.+|..+
T Consensus 361 L~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 361 FSKELTP----VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHSCCCH----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred HhcCCCC----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9986431 11 34566777654 4779999999999988765 45667899999
Q ss_pred HHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703 332 TELEKSLDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
|.++...|++++|++.|++|++..| ..|.
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~-~~p~ 465 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGS-LIPS 465 (472)
T ss_dssp HHHHHHHHHCC-------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CCCc
Confidence 9999999999999999999999988 4444
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=6.3e-31 Score=235.98 Aligned_cols=311 Identities=8% Similarity=0.028 Sum_probs=262.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
.+..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4678999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhhhcCChhhH----------------------------------------------------
Q 036703 98 MKMGEVDRARNVYECAVEIFLADDHDEA---------------------------------------------------- 125 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------------------------------------- 125 (365)
...|++++|+..|+ ++.. .|+.....
T Consensus 104 ~~~g~~~~A~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHcCCHHHHHHHHH-HHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999995 6655 55430000
Q ss_pred ------------HHHHHHHHHHHHh-----ccccchhHHHHHHHHHHhccCCCchh-----HHHHHHHHHHHHHcCCchh
Q 036703 126 ------------EQLFVAFAKFEEM-----GCNCKETDRARCIYKFALDRIPKGRA-----EDLYRKFLAFEKQYGDREG 183 (365)
Q Consensus 126 ------------~~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~~~~~~~ 183 (365)
..+...++.++.. ....|++++|+..|+++++..|.+.. ...+...+.++...|+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~- 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL- 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH-
Confidence 0022222222220 00335899999999999999998642 234556667777778755
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703 184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD 263 (365)
Q Consensus 184 ~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
+|+..|++++..+|+ ..++..+|.++...|++++|...|++++...|.+.. ++..++.++ ..
T Consensus 261 -------~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~ 322 (537)
T 3fp2_A 261 -------DAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---------TYYHRGQMY-FI 322 (537)
T ss_dssp -------HHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HH
T ss_pred -------HHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHH-Hh
Confidence 799999999999999 899999999999999999999999999999998753 788888887 59
Q ss_pred cCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchh
Q 036703 264 AGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETE 342 (365)
Q Consensus 264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 342 (365)
.|++++|+..|+++++.. |+ +..+..++.++...|++++|...|+++++.+|+++.++..++.++...|+++
T Consensus 323 ~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLN-------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999998 44 6788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcCC
Q 036703 343 RARAIFELAIAQPIL 357 (365)
Q Consensus 343 ~A~~~~~~a~~~~~~ 357 (365)
+|...|+++++..|.
T Consensus 396 ~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999998873
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-30 Score=218.57 Aligned_cols=288 Identities=8% Similarity=0.011 Sum_probs=256.8
Q ss_pred HHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh
Q 036703 45 RWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD 123 (365)
Q Consensus 45 ~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 123 (365)
..+...|+ ...+...+..+...|++++|..+|++++..+|.+...+..++.++...|++++|+..++++++. .|.+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~-- 89 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL-YPSN-- 89 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTS--
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCC--
Confidence 33333444 6788899999999999999999999999999999999999999999999999999999999999 9888
Q ss_pred hHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 124 EAEQLFVAFAKFEEMGCNCK-ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
+.+|..+|.++. ..| ++++|+..|+++++..|.. ...|..++..+...|+.+ .|+..|+++++.
T Consensus 90 --~~~~~~l~~~~~---~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~ 154 (330)
T 3hym_B 90 --PVSWFAVGCYYL---MVGHKNEHARRYLSKATTLEKTY--GPAWIAYGHSFAVESEHD--------QAMAAYFTAAQL 154 (330)
T ss_dssp --THHHHHHHHHHH---HSCSCHHHHHHHHHHHHTTCTTC--THHHHHHHHHHHHHTCHH--------HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHccCHH--------HHHHHHHHHHHh
Confidence 999999999999 999 9999999999999999886 578889999999999866 799999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703 203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF 282 (365)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 282 (365)
.|++..++..++.++...|++++|...|+++++..|.+.. ++..++.++ ...|++++|+..+++++...+
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF---------VMHEVGVVA-FQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHcccHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999853 778888887 699999999999999999854
Q ss_pred cCCCcc--h-hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703 283 SFSPRM--E-ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDL 359 (365)
Q Consensus 283 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 359 (365)
...... | .+.++..+|.++...|++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++..| +.
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~ 303 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DD 303 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CC
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-Cc
Confidence 322110 2 2678999999999999999999999999999999999999999999999999999999999999999 44
Q ss_pred Cc
Q 036703 360 PE 361 (365)
Q Consensus 360 p~ 361 (365)
|.
T Consensus 304 ~~ 305 (330)
T 3hym_B 304 TF 305 (330)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=5.4e-31 Score=225.07 Aligned_cols=295 Identities=13% Similarity=0.037 Sum_probs=253.7
Q ss_pred ChhhHHH-HHHHHHHhCCCch----HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHH
Q 036703 1 FIDHGRN-AWDRVVTLSPRVD----QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARH 74 (365)
Q Consensus 1 ~~~~A~~-~~~~~l~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~ 74 (365)
+|++|+. .|++++...|+++ ..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|..
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 3567777 8888888888764 56999999999999999999999999999999 7899999999999999999999
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH---------------HHHHHhc
Q 036703 75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF---------------AKFEEMG 139 (365)
Q Consensus 75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 139 (365)
.|+++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+ ...+... .....
T Consensus 120 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 192 (368)
T 1fch_A 120 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY-TPAY----AHLVTPAEEGAGGAGLGPSKRILGSLL-- 192 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-STTT----GGGCC---------------CTTHHHH--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCc----HHHHHHHHHHhhhhcccHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999999 8876 4443311 23334
Q ss_pred cccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 036703 140 CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER 219 (365)
Q Consensus 140 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~ 219 (365)
..|++++|+..|+++++..|......++..++.++...|+.+ +|+..|++++..+|+++.+|..+|.++..
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD--------KAVDCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 689999999999999999998433678889999999999866 79999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc----h-hHHHH
Q 036703 220 VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM----E-ERRIF 294 (365)
Q Consensus 220 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----~-~~~~~ 294 (365)
.|++++|+..|+++++..|.+. .++..++..+ ...|++++|+..|++++...|...... | ...+|
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~---------~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYI---------RSRYNLGISC-INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 9999999999999999999875 3788888887 699999999999999999976542100 1 16789
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703 295 KKYIEMELCLGNIDPCRKLYEKYLEWS 321 (365)
Q Consensus 295 ~~~~~~~~~~~~~~~A~~~~~~al~~~ 321 (365)
..++.++...|++++|..+++++++..
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 999999999999999999999887653
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=3.5e-31 Score=226.01 Aligned_cols=282 Identities=13% Similarity=0.075 Sum_probs=238.4
Q ss_pred HHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 036703 41 QIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE 115 (365)
Q Consensus 41 ~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 115 (365)
..+.+++...|. ...|...|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344444444443 356999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH--------HHHHHHHHHHHHcCCchhhhHH
Q 036703 116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE--------DLYRKFLAFEKQYGDREGIEDA 187 (365)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 187 (365)
. .|.+ ..+|..+|.++. ..|++++|+..|+++++..|..... .++..++..+...|+
T Consensus 128 ~-~p~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 192 (365)
T 4eqf_A 128 L-QPNN----LKALMALAVSYT---NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV------- 192 (365)
T ss_dssp H-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH-------
T ss_pred c-CCCC----HHHHHHHHHHHH---ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh-------
Confidence 9 8888 999999999999 9999999999999999988775311 111223445555554
Q ss_pred HHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703 188 IAGKMRLQYEDGVRKNPM--NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG 265 (365)
Q Consensus 188 ~~~~a~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (365)
.++|+..|+++++.+|. ++.++..+|.++...|++++|+..|+++++..|.+.. +|..++..+ ...|
T Consensus 193 -~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~-~~~g 261 (365)
T 4eqf_A 193 -LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS---------LWNRLGATL-ANGD 261 (365)
T ss_dssp -HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HHTT
T ss_pred -HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH-HHcC
Confidence 34799999999999999 8999999999999999999999999999999999853 888899988 5999
Q ss_pred ChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc------------hHHHHHHHH
Q 036703 266 DLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE------------NCYAWSKYT 332 (365)
Q Consensus 266 ~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~ 332 (365)
++++|+..|+++++.. |+ +..+..+|.++...|++++|+..|+++++..|+ +..+|..++
T Consensus 262 ~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQ-------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp CHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 9999999999999998 55 788999999999999999999999999999887 478999999
Q ss_pred HHHhhccchhHHHHHHHHHhcCc
Q 036703 333 ELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
.++...|+.+.+..+.++.+..-
T Consensus 335 ~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 335 IALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHHHHcCcHHHHHHHHHhhHHHH
Confidence 99999999999988877655433
No 22
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.98 E-value=1.7e-29 Score=227.45 Aligned_cols=323 Identities=12% Similarity=0.194 Sum_probs=259.4
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC---hhHHHHHHHHHHhhC---CChHHHHHHHHHHHHhccH------
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN---VAGARQIFERWMHWM---PDHEGWLSYIKFKLRYNEV------ 69 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~------ 69 (365)
++.++.+|++++..+|.....|..++..+.+.|+ ++.+..+|++++... |+..+|..|+.+....++.
T Consensus 82 ~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~ 161 (679)
T 4e6h_A 82 WKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEE 161 (679)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccch
Confidence 5678999999999999999999999999999998 999999999999888 7788999999887765542
Q ss_pred --HHHHHHHHHHHHh----CCcchHHHHHHHHHHHh---------hcchHHHHHHHHHHHh-------------------
Q 036703 70 --QRARHIFERLVQC----HPYNLSAWINFADFEMK---------MGEVDRARNVYECAVE------------------- 115 (365)
Q Consensus 70 --~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~------------------- 115 (365)
+..+.+|++++.. +|.+..+|..+..++.. +++.+.++.+|++++.
T Consensus 162 ~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~ 241 (679)
T 4e6h_A 162 ARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD 241 (679)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh
Confidence 4455788888763 56677788888766542 2344555555555543
Q ss_pred --------------------------------------------------------------------------------
Q 036703 116 -------------------------------------------------------------------------------- 115 (365)
Q Consensus 116 -------------------------------------------------------------------------------- 115 (365)
T Consensus 242 ~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~ 321 (679)
T 4e6h_A 242 VNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSD 321 (679)
T ss_dssp HCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCH
T ss_pred cCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccc
Confidence
Q ss_pred ----------------hhhcCChhhHHHHHHHHHHHHHhccccchhHHHH-HHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703 116 ----------------IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRAR-CIYKFALDRIPKGRAEDLYRKFLAFEKQY 178 (365)
Q Consensus 116 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 178 (365)
. .|.. +.+|+.++.++. ..|+.++|+ .+|++|+..+|.+ ..+|..++.++...
T Consensus 322 ~~~~~Rv~~~Ye~aL~~-~p~~----~~lW~~ya~~~~---~~~~~~~a~r~il~rAi~~~P~s--~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 322 DLHKARMTYVYMQAAQH-VCFA----PEIWFNMANYQG---EKNTDSTVITKYLKLGQQCIPNS--AVLAFSLSEQYELN 391 (679)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTC----HHHHHHHHHHHH---HHSCCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHH-cCCC----HHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHh
Confidence 3 3332 566777777777 788888886 9999999888876 67888999998888
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHc-----------CCC-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703 179 GDREGIEDAIAGKMRLQYEDGVRK-----------NPM-----------NYDTWFDYIRLEERVGNQERVREVYERAIAN 236 (365)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~l~~-----------~p~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 236 (365)
|+.+ +|+.+|++++.. .|. ...+|..++.+..+.|+.+.|+.+|.+|++.
T Consensus 392 ~~~e--------~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 392 TKIP--------EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp TCHH--------HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred CCHH--------HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8754 688899988874 253 3458999999999999999999999999987
Q ss_pred CC-CchhhhHHHHhHHHHHHHHHHHhhcc-CChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHH
Q 036703 237 VP-PAEEKRYWQRYIYLWINYALYKEVDA-GDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKL 313 (365)
Q Consensus 237 ~p-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~ 313 (365)
.| ... .+|+.++.++ ... ++++.|+.+|+++++.. |+ +.+|..+++++...|+.+.|+.+
T Consensus 464 ~~~~~~---------~lyi~~A~lE-~~~~~d~e~Ar~ife~~Lk~~-------p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 464 KKLVTP---------DIYLENAYIE-YHISKDTKTACKVLELGLKYF-------ATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp GGGSCT---------HHHHHHHHHH-HTTTSCCHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCCCh---------HHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC-------CCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 33 222 2677777775 455 45999999999999997 54 77899999999999999999999
Q ss_pred HHHHHhhCc---chHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703 314 YEKYLEWSP---ENCYAWSKYTELEKSLDETERARAIFELAIAQPILDL 359 (365)
Q Consensus 314 ~~~al~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 359 (365)
|++++...| ....+|..+..++...|+.+.+.++++++.+..|.+.
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999988 5789999999999999999999999999999999543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.98 E-value=1.2e-30 Score=222.78 Aligned_cols=287 Identities=13% Similarity=0.048 Sum_probs=241.3
Q ss_pred HHHHHHHHhCCCch----HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 7 NAWDRVVTLSPRVD----QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 7 ~~~~~~l~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
..++++....|.++ ..|+.+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444445544 44999999999999999999999999999999 78999999999999999999999999999
Q ss_pred hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH----------HHHHHHHhccccchhHHHHHH
Q 036703 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV----------AFAKFEEMGCNCKETDRARCI 151 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~A~~~ 151 (365)
.+|+++.+|..+|.++...|++++|+..|+++++. .|.+ ...+. .++.++. ..|++++|+..
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~ 199 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ-NPKY----KYLVKNKKGSPGLTRRMSKSPV---DSSVLEGVKEL 199 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CHHH----HCC----------------------CCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh-Cccc----hHHHhhhccchHHHHHHHHHHh---hhhhHHHHHHH
Confidence 99999999999999999999999999999999999 7765 44444 4488999 99999999999
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 036703 152 YKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYE 231 (365)
Q Consensus 152 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 231 (365)
|+++++..|.......+..++.++...|+.+ +|+..|+++++.+|++..+|..+|.++...|++++|+..|+
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN--------RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998433678999999999999866 79999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc------chhHHHHHHHHHHHHHhC
Q 036703 232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR------MEERRIFKKYIEMELCLG 305 (365)
Q Consensus 232 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 305 (365)
++++..|.+.. ++..++.++ ...|++++|+..|+++++..|..... +....+|..++.++...|
T Consensus 272 ~al~~~p~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 272 RALEIQPGFIR---------SRYNLGISC-INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHCTTCHH---------HHHHHHHHH-HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHhcCCCchH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 99999999853 788888887 59999999999999999997653220 012578999999999999
Q ss_pred CCccHHHHHHHHHh
Q 036703 306 NIDPCRKLYEKYLE 319 (365)
Q Consensus 306 ~~~~A~~~~~~al~ 319 (365)
+.+.+..+.++.+.
T Consensus 342 ~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 342 QPELFQAANLGDLD 355 (365)
T ss_dssp CHHHHHHHHTTCCG
T ss_pred cHHHHHHHHHhhHH
Confidence 99988888776544
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=4.9e-29 Score=209.29 Aligned_cols=277 Identities=13% Similarity=0.070 Sum_probs=236.7
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
+...|+.+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++++.+|+++.++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3466899999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH--------------HH-HHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF--------------AK-FEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
...|++++|+..++++++. .|.. ...+..+ +. ++. ..|++++|+..++++++..|.+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~ 171 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS-QPQY----EQLGSVNLQADVDIDDLNVQSEDFFFA---APNEYRECRTLLHAALEMNPND 171 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT-STTT----TTC--------------------CCTT---SHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHcCCHHHHHHHHHHHHHh-CCcc----HHHHHHHhHHHHHHHHHHHHHHhHHHH---HcccHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999 8876 5555555 55 577 8999999999999999998886
Q ss_pred hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
...+..++..+...|+.+ +|+..++++++.+|++..+|..++.++...|++++|...|+++++..|.+..
T Consensus 172 --~~~~~~la~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 241 (327)
T 3cv0_A 172 --AQLHASLGVLYNLSNNYD--------SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241 (327)
T ss_dssp --HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --HHHHHHHHHHHHHhccHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 678888888988999865 7999999999999999999999999999999999999999999999998753
Q ss_pred hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcch------hHHHHHHHHHHHHHhCCCccHHHHHHH
Q 036703 243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME------ERRIFKKYIEMELCLGNIDPCRKLYEK 316 (365)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 316 (365)
.+..++.++ ...|++++|+..|++++...|....... .+..+..++.++...|++++|..++++
T Consensus 242 ---------~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 242 ---------VMYNMAVSY-SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp ---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred ---------HHHHHHHHH-HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 777888887 5889999999999999988754211100 356677777777777887777777777
Q ss_pred HHhhCcc
Q 036703 317 YLEWSPE 323 (365)
Q Consensus 317 al~~~p~ 323 (365)
+++..|+
T Consensus 312 ~l~~~~~ 318 (327)
T 3cv0_A 312 NVEPFAK 318 (327)
T ss_dssp CSHHHHH
T ss_pred HHHhcch
Confidence 7666554
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.3e-29 Score=212.84 Aligned_cols=270 Identities=14% Similarity=0.088 Sum_probs=240.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...|...+..+...|++++|...|+++++.+|+++.++..+|.++...|++++|+..++++++. .|.+ ..++..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~~~~l 95 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKD----IAVHAAL 95 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCC----HHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999 9888 9999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHH--------------HH-HHHHcCCchhhhHHHHHHHHHHHH
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF--------------LA-FEKQYGDREGIEDAIAGKMRLQYE 197 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~a~~~~~ 197 (365)
|.++. ..|++++|+..|+++++..|... ..+... +. ++...| ..++|+..++
T Consensus 96 a~~~~---~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~ 162 (327)
T 3cv0_A 96 AVSHT---NEHNANAALASLRAWLLSQPQYE--QLGSVNLQADVDIDDLNVQSEDFFFAAPN--------EYRECRTLLH 162 (327)
T ss_dssp HHHHH---HTTCHHHHHHHHHHHHHTSTTTT--TC--------------------CCTTSHH--------HHHHHHHHHH
T ss_pred HHHHH---HcCCHHHHHHHHHHHHHhCCccH--HHHHHHhHHHHHHHHHHHHHHhHHHHHcc--------cHHHHHHHHH
Confidence 99999 99999999999999999988763 222222 11 111222 2457999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 036703 198 DGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277 (365)
Q Consensus 198 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 277 (365)
++++.+|.+..++..++.++...|++++|...+++++...|.+.. ++..++..+ ...|++++|+..|+++
T Consensus 163 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---------LWNKLGATL-ANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998753 778888887 5899999999999999
Q ss_pred HhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc------------hHHHHHHHHHHHhhccchhHH
Q 036703 278 FIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE------------NCYAWSKYTELEKSLDETERA 344 (365)
Q Consensus 278 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~g~~~~A 344 (365)
++.. |+ +..+..++.++...|++++|...|++++...|+ +..+|..++.++...|+.++|
T Consensus 233 ~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 233 LDIN-------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 9987 54 778899999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHhcCcCC
Q 036703 345 RAIFELAIAQPIL 357 (365)
Q Consensus 345 ~~~~~~a~~~~~~ 357 (365)
..+++++++..|.
T Consensus 306 ~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 306 ELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCCSHHHHH
T ss_pred HHHHHHHHHhcch
Confidence 9999988876653
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.1e-27 Score=206.75 Aligned_cols=312 Identities=10% Similarity=0.031 Sum_probs=247.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhh---------CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHW---------MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCH------ 83 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------ 83 (365)
..++..+|.++...|++++|++.|++++++ +|. ..+|..+|.++...|++++|...|++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 567889999999999999999999999986 344 5678899999999999999999999999863
Q ss_pred --CcchHHHHHHHHHHHh--hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 84 --PYNLSAWINFADFEMK--MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 84 --p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
+..+.++...|..+.. .+++++|+.+|+++++. .|++ +.++..++.++......++.++|+..|+++++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-~p~~----~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-KPKN----PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 3456777777766655 45799999999999999 9998 8889888887651114466789999999999999
Q ss_pred CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703 160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239 (365)
Q Consensus 160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 239 (365)
|.+. .++..++......+.... ..+.|...|++++..+|.+..++..+|.++...|++++|+..|+++++..|.
T Consensus 206 p~~~--~~~~~l~~~~~~~~~~~~----~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 206 PDNQ--YLKVLLALKLHKMREEGE----EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp SSCH--HHHHHHHHHHHHCC----------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred Ccch--HHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 9873 444444443333332211 1236999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhHHHHHHHHHHHh------------------hccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHH
Q 036703 240 AEEKRYWQRYIYLWINYALYKE------------------VDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEME 301 (365)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 301 (365)
+.. ++..+|..+. ...+.++.|+..+++++...|... ..+..+|.++
T Consensus 280 ~~~---------~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~lg~~~ 344 (472)
T 4g1t_A 280 NAY---------LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF------RVCSILASLH 344 (472)
T ss_dssp CHH---------HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC------CCHHHHHHHH
T ss_pred hHH---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh------hhhhhHHHHH
Confidence 854 4444444331 012346788999999999885443 4558899999
Q ss_pred HHhCCCccHHHHHHHHHhhCcchHH---HHHHHHHHH-hhccchhHHHHHHHHHhcCcCC
Q 036703 302 LCLGNIDPCRKLYEKYLEWSPENCY---AWSKYTELE-KSLDETERARAIFELAIAQPIL 357 (365)
Q Consensus 302 ~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~-~~~g~~~~A~~~~~~a~~~~~~ 357 (365)
...|++++|+..|+++++..|++.. ++..++.+. ...|+.++|+..|+++++..|.
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999887554 456666654 4679999999999999998873
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=5e-28 Score=205.19 Aligned_cols=259 Identities=8% Similarity=0.006 Sum_probs=220.5
Q ss_pred HHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCcchHHH
Q 036703 13 VTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE-VQRARHIFERLVQCHPYNLSAW 90 (365)
Q Consensus 13 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~ 90 (365)
+..+|++..+|..++.++...|++++|+..|+++++++|+ ..+|..++.++...|+ +++|+..|++++..+|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 4567888999999999999999999999999999999999 8999999999999996 9999999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHH
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 170 (365)
..+|.++...|++++|+..|+++++. .|.+ ..+|..+|.++. ..|++++|+..|+++++.+|.+ ...|..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~l-dP~~----~~a~~~lg~~~~---~~g~~~eAl~~~~~al~l~P~~--~~a~~~ 239 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQ-DAKN----YHAWQHRQWVIQ---EFKLWDNELQYVDQLLKEDVRN--NSVWNQ 239 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHTCCTTHHHHHHHHHHHCTTC--HHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh-CccC----HHHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCC--HHHHHH
Confidence 99999999999999999999999999 9998 999999999999 9999999999999999999987 678888
Q ss_pred HHHHHHH-cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCchhhhHHH
Q 036703 171 FLAFEKQ-YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG--NQERVREVYERAIANVPPAEEKRYWQ 247 (365)
Q Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~ 247 (365)
++.++.. .|..+.. ....++..|++++..+|++..+|..++.++...| ++++|...++++ +..|++..
T Consensus 240 lg~~l~~l~~~~~eA---~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~----- 310 (382)
T 2h6f_A 240 RYFVISNTTGYNDRA---VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY----- 310 (382)
T ss_dssp HHHHHHHTTCSCSHH---HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH-----
T ss_pred HHHHHHHhcCcchHH---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH-----
Confidence 8888877 4442321 1223468999999999999999999999998888 689999999998 77888743
Q ss_pred HhHHHHHHHHHHHhhccC---------ChhHHHHHHHHH-HhccccCCCcchh-HHHHHHHHHHHH
Q 036703 248 RYIYLWINYALYKEVDAG---------DLERTRDVYRTL-FIFYFSFSPRMEE-RRIFKKYIEMEL 302 (365)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~a-~~~~~~~~~~~~~-~~~~~~~~~~~~ 302 (365)
++..++.++. ..| .+++|+.+|+++ ++.+ |. ...|..++..+.
T Consensus 311 ----al~~La~~~~-~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-------P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 311 ----LIAFLVDIYE-DMLENQCDNKEDILNKALELCEILAKEKD-------TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp ----HHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHHHHHTTC-------GGGHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHH-HHhcccccchHHHHHHHHHHHHHHHHHhC-------chhHHHHHHHHHHHH
Confidence 5666666652 432 246677777777 6666 43 555565555443
No 28
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=5.8e-28 Score=200.89 Aligned_cols=273 Identities=16% Similarity=0.303 Sum_probs=225.3
Q ss_pred CCCchHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhhCCC-hHHHHHHHHHHHH-------hccH-------HHH
Q 036703 16 SPRVDQLWNNYIRMEENL----GNV----AGARQIFERWMHWMPD-HEGWLSYIKFKLR-------YNEV-------QRA 72 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~----g~~----~~A~~~~~~al~~~p~-~~~~~~~~~~~~~-------~~~~-------~~A 72 (365)
+|.....|..++.++.+. ++. ++|+..|++++..+|. +.+|..++.++.. .|++ ++|
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 455678899999998875 343 6899999999999999 8999999998864 4775 899
Q ss_pred HHHHHHHHH-hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHH-HHHHHHHHHHhccccchhHHHHH
Q 036703 73 RHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ-LFVAFAKFEEMGCNCKETDRARC 150 (365)
Q Consensus 73 ~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~ 150 (365)
+.+|++++. .+|++..+|..+|.++...|++++|+.+|+++++. .|.+ +. +|..++.++. +.|++++|+.
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~---~~~~~~~A~~ 155 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-EDID----PTLVYIQYMKFAR---RAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-SSSC----THHHHHHHHHHHH---HHHCHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-cccC----ccHHHHHHHHHHH---HhcCHHHHHH
Confidence 999999999 69999999999999999999999999999999999 8887 65 9999999999 9999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHH-cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 036703 151 IYKFALDRIPKGRAEDLYRKFLAFEKQ-YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV 229 (365)
Q Consensus 151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 229 (365)
+|+++++..|.. ..+|...+.++.. .|+.+ .|+.+|+++++.+|+++.+|..++.++...|++++|+.+
T Consensus 156 ~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 225 (308)
T 2ond_A 156 IFKKAREDARTR--HHVYVTAALMEYYCSKDKS--------VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225 (308)
T ss_dssp HHHHHHTSTTCC--THHHHHHHHHHHHTSCCHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhcCCCC--HHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999988876 5677777766544 56644 799999999999999999999999999999999999999
Q ss_pred HHHHHhcC--CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCC
Q 036703 230 YERAIANV--PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNI 307 (365)
Q Consensus 230 ~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (365)
|++++..+ |++.. ..+|..++.++ ...|+.+.|..+++++++..|+..... ..+.+ ...+
T Consensus 226 ~~~al~~~~l~p~~~-------~~l~~~~~~~~-~~~g~~~~a~~~~~~a~~~~p~~~~~~-------~~~~~---~~r~ 287 (308)
T 2ond_A 226 FERVLTSGSLPPEKS-------GEIWARFLAFE-SNIGDLASILKVEKRRFTAFREEYEGK-------ETALL---VDRY 287 (308)
T ss_dssp HHHHHHSSSSCGGGC-------HHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHTTTTTSSC-------HHHHH---HTTT
T ss_pred HHHHHhccCCCHHHH-------HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcccccccc-------hHHHH---HHHH
Confidence 99999963 32211 34888899887 589999999999999999986543321 01111 1111
Q ss_pred ccHHHHHHHHHhhCcchHHHHHHHH
Q 036703 308 DPCRKLYEKYLEWSPENCYAWSKYT 332 (365)
Q Consensus 308 ~~A~~~~~~al~~~p~~~~~~~~~~ 332 (365)
+.+..+|+++.....+|
T Consensus 288 --------~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 288 --------KFMDLYPCSASELKALG 304 (308)
T ss_dssp --------CBTTBCSSCHHHHHTTT
T ss_pred --------HhcccCCCCHHHHHhcC
Confidence 55667899888776544
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=4.8e-28 Score=205.29 Aligned_cols=256 Identities=11% Similarity=0.065 Sum_probs=228.6
Q ss_pred HhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc-hHHHHHHHHHHHhhhhcCChhh
Q 036703 47 MHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE-VDRARNVYECAVEIFLADDHDE 124 (365)
Q Consensus 47 l~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~ 124 (365)
+..+|+ ..+|..++.++...|++++|+..|++++..+|++..+|..+|.++...|+ +++|+..|+++++. .|++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-~P~~--- 165 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-QPKN--- 165 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTC---
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-CCCC---
Confidence 345566 67899999999999999999999999999999999999999999999997 99999999999999 9998
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC
Q 036703 125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP 204 (365)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p 204 (365)
..+|..+|.++. ..|++++|+..|+++++..|.+ ...|...+.++...|+.+ .|+..|+++++.+|
T Consensus 166 -~~a~~~~g~~~~---~~g~~~eAl~~~~kal~ldP~~--~~a~~~lg~~~~~~g~~~--------eAl~~~~~al~l~P 231 (382)
T 2h6f_A 166 -YQVWHHRRVLVE---WLRDPSQELEFIADILNQDAKN--YHAWQHRQWVIQEFKLWD--------NELQYVDQLLKEDV 231 (382)
T ss_dssp -HHHHHHHHHHHH---HHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCT--------THHHHHHHHHHHCT
T ss_pred -HHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCccC--HHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhCC
Confidence 999999999999 9999999999999999999997 678999999998999876 69999999999999
Q ss_pred CCHHHHHHHHHHHHH-hCCHHHH-----HHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC--ChhHHHHHHHH
Q 036703 205 MNYDTWFDYIRLEER-VGNQERV-----REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG--DLERTRDVYRT 276 (365)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~~~~~A-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~ 276 (365)
++..+|..+|.++.. .|..++| +..|++++..+|.+.. +|..++.++ ...| ++++|+..+.+
T Consensus 232 ~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~---------a~~~l~~ll-~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES---------AWNYLKGIL-QDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHH-TTTCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHH-HccCccchHHHHHHHHH
Confidence 999999999999998 5665888 5999999999999854 788888877 3666 68999999988
Q ss_pred HHhccccCCCcchh-HHHHHHHHHHHHHhC---------CCccHHHHHHHH-HhhCcchHHHHHHHHHHHhhc
Q 036703 277 LFIFYFSFSPRMEE-RRIFKKYIEMELCLG---------NIDPCRKLYEKY-LEWSPENCYAWSKYTELEKSL 338 (365)
Q Consensus 277 a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~ 338 (365)
+ +.. |+ +..+..++.++.+.| .+++|+++|+++ ++.+|.....|..++..+...
T Consensus 302 ~-~~~-------p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 302 L-QPS-------HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp H-TTT-------CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred h-ccC-------CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 7 555 44 678889999998874 258999999999 999999999999998877653
No 30
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.96 E-value=1.3e-26 Score=203.45 Aligned_cols=321 Identities=15% Similarity=0.139 Sum_probs=246.8
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhcc-HHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNE-VQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~A~~~~~~~ 79 (365)
+++.|+.+|++++...|. |+++.++.+|++++...|+..+|..|+.+..+.++ .+..+.+|+++
T Consensus 10 ~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp --CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 367899999999999998 78999999999999999999999999999998874 46788899999
Q ss_pred HHh---CCcchHHHHHHHHHHH----hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhc----------ccc
Q 036703 80 VQC---HPYNLSAWINFADFEM----KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG----------CNC 142 (365)
Q Consensus 80 l~~---~p~~~~~~~~~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 142 (365)
+.. +|.++.+|..++.++. ..|+.+.++++|++++.. .+.. ...+|..+..+.... ...
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~---~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGS---LSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTT---HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhh---HHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 985 6788999999999976 467899999999999986 4332 367788777766400 022
Q ss_pred chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 036703 143 KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN 222 (365)
Q Consensus 143 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 222 (365)
+.+..|+.+|+.+....+.. ...+|..|+.++...+.... ......+...+|++++..+|.++.+|..++.++...|+
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~-s~~~W~~y~~~E~~~~~~~~-~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGW-SVKNAARLIDLEMENGMKLG-GRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-SHHHHHHHHHHHHTCTTCCC-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhcCCccCc-chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34556677777666543331 25689999999875421100 00113356789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhhhH---------------H----------------HHhHHHHHHHHHHHhhccCChhHHH
Q 036703 223 QERVREVYERAIANVPPAEEKRY---------------W----------------QRYIYLWINYALYKEVDAGDLERTR 271 (365)
Q Consensus 223 ~~~A~~~~~~~~~~~p~~~~~~~---------------~----------------~~~~~~~~~~~~~~~~~~~~~~~a~ 271 (365)
.++|+.+|++++.. |.+....+ . .....+|+.|+.++ .+.++.+.|+
T Consensus 229 ~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~-~r~~~~~~AR 306 (493)
T 2uy1_A 229 KEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV-LKKRGLELFR 306 (493)
T ss_dssp HHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHH-HHHHCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH-HHcCCHHHHH
Confidence 99999999999999 87642110 0 01124688888886 4677899999
Q ss_pred HHHHHHHhccccCCCcchhHHHHHHHHHHHHHhC-CCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHH
Q 036703 272 DVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLG-NIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFEL 350 (365)
Q Consensus 272 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 350 (365)
.+|+++ ... . ....+|...+.++...+ +.+.|+.+|+++++..|+++..|..++.++...|+.++|+.+|++
T Consensus 307 ~i~~~A-~~~-~-----~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 307 KLFIEL-GNE-G-----VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHH-TTS-C-----CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHh-hCC-C-----CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999 432 1 12567788888887766 599999999999998888888888888888888888888888887
Q ss_pred H
Q 036703 351 A 351 (365)
Q Consensus 351 a 351 (365)
+
T Consensus 380 ~ 380 (493)
T 2uy1_A 380 L 380 (493)
T ss_dssp S
T ss_pred H
Confidence 7
No 31
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=4.9e-27 Score=195.28 Aligned_cols=241 Identities=16% Similarity=0.283 Sum_probs=207.1
Q ss_pred CcchHHHHHHHHHHHhh----cch----HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc-------cchh---
Q 036703 84 PYNLSAWINFADFEMKM----GEV----DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN-------CKET--- 145 (365)
Q Consensus 84 p~~~~~~~~~~~~~~~~----~~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--- 145 (365)
|.+...|..++.+..+. ++. ++|+..|++++.. .|.+ +.+|..++.++. . .|++
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~----~~~w~~~~~~~~---~~~~~l~~~g~~~~~ 76 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHH----PDIWYEAAQYLE---QSSKLLAEKGDMNNA 76 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTC----HHHHHHHHHHHH---HHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCC----HHHHHHHHHHHH---Hhchhhhhccchhhc
Confidence 34566777777776653 222 6888899999998 8888 899999988876 4 3665
Q ss_pred ----HHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHH
Q 036703 146 ----DRARCIYKFALD-RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD-TWFDYIRLEER 219 (365)
Q Consensus 146 ----~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-~~~~~~~~~~~ 219 (365)
++|+.+|+++++ ..|.+ ..+|..++.++...|+.+ .|+.+|+++++..|.+.. +|..++.++..
T Consensus 77 ~~~~~~A~~~~~rAl~~~~p~~--~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 77 KLFSDEAANIYERAISTLLKKN--MLLYFAYADYEESRMKYE--------KVHSIYNRLLAIEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhccccCccHHHHHHHHHHHH
Confidence 999999999999 57876 679999999999999855 799999999999999987 99999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHH
Q 036703 220 VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYI 298 (365)
Q Consensus 220 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 298 (365)
.|++++|+..|+++++..|.+.. +|+..+.+.....|++++|+.+|+++++.. |+ +.+|..++
T Consensus 147 ~~~~~~A~~~~~~a~~~~p~~~~---------~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~ 210 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDKSVAFKIFELGLKKY-------GDIPEYVLAYI 210 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTCCTH---------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------TTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHH
Confidence 99999999999999999888743 666666663224799999999999999998 55 78999999
Q ss_pred HHHHHhCCCccHHHHHHHHHhh---Ccc-hHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 299 EMELCLGNIDPCRKLYEKYLEW---SPE-NCYAWSKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 299 ~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
.++...|++++|+.+|++++.. .|+ +..+|..++.++...|+.++|..+++++++..|.+
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999995 564 78899999999999999999999999999999953
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=1.2e-26 Score=182.63 Aligned_cols=199 Identities=18% Similarity=0.140 Sum_probs=175.3
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD 95 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 95 (365)
|.++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 788999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHhh-----------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh
Q 036703 96 FEMKM-----------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA 164 (365)
Q Consensus 96 ~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 164 (365)
++... |++++|+..|+++++. .|++ ..+|..+|.++. ..|++++|+..|+++++.. .+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~~----~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~-~~-- 150 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV-NPRY----APLHLQRGLVYA---LLGERDKAEASLKQALALE-DT-- 150 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC-CC--
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-Cccc----HHHHHHHHHHHH---HcCChHHHHHHHHHHHhcc-cc--
Confidence 99999 9999999999999999 9998 999999999999 9999999999999999988 43
Q ss_pred HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 036703 165 EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234 (365)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 234 (365)
..++..++..+...|+.+ .|+..|+++++.+|+++.++..++.++...|++++|+..|+++-
T Consensus 151 ~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLD--------EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 678999999999999866 69999999999999999999999999999999999999998864
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=5.2e-26 Score=185.84 Aligned_cols=257 Identities=10% Similarity=-0.007 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH----HHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS----AWINFA 94 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~~ 94 (365)
++.+..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++ .|.++. ++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 455677777777777777777777777777777 56777777777777777777777777777 333433 377777
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 174 (365)
.++...|++++|+..|+++++. .|.+ ..+|..+|.++. ..|++++|+..|+++++..|.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~~~~------------ 141 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR-DTTR----LDMYGQIGSYFY---NKGNFPLAIQYMEKQIRPTTTD------------ 141 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-STTC----THHHHHHHHHHH---HTTCHHHHHHHHGGGCCSSCCC------------
T ss_pred HHHHHcccHHHHHHHHHHHHhc-Cccc----HHHHHHHHHHHH---HccCHHHHHHHHHHHhhcCCCc------------
Confidence 7777777777777777777777 7766 677777777777 7777777777777777665554
Q ss_pred HHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHH
Q 036703 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWI 254 (365)
Q Consensus 175 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 254 (365)
..+|..+|......+++++|...|+++++..|.+.. .+.
T Consensus 142 --------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---------~~~ 180 (272)
T 3u4t_A 142 --------------------------------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI---------GYL 180 (272)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHH
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchH---------HHH
Confidence 333444442222223555555555555555554422 333
Q ss_pred HHHHHHhhccCC---hhHHHHHHHHHHhccccCCCc-ch-hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHH
Q 036703 255 NYALYKEVDAGD---LERTRDVYRTLFIFYFSFSPR-ME-ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329 (365)
Q Consensus 255 ~~~~~~~~~~~~---~~~a~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 329 (365)
..+..+ ...++ +++|+..|+++++........ -+ ...++..+|.++...|++++|+..|+++++.+|+++.++-
T Consensus 181 ~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 181 WRARAN-AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHH-HHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHH-HHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHH
Confidence 333333 23343 555555555555543111000 01 1467888999999999999999999999999999999998
Q ss_pred HHHHHHhhcc
Q 036703 330 KYTELEKSLD 339 (365)
Q Consensus 330 ~~~~~~~~~g 339 (365)
.+..+....+
T Consensus 260 ~l~~~~~~~~ 269 (272)
T 3u4t_A 260 GLKMKLEHHH 269 (272)
T ss_dssp HHC-------
T ss_pred Hhhhhhcccc
Confidence 8887765543
No 34
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.95 E-value=1e-24 Score=191.35 Aligned_cols=312 Identities=14% Similarity=0.185 Sum_probs=245.1
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC-hhHHHHHHHHHHhh---CCC-hHHHHHHHHHHH----HhccHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN-VAGARQIFERWMHW---MPD-HEGWLSYIKFKL----RYNEVQR 71 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~---~p~-~~~~~~~~~~~~----~~~~~~~ 71 (365)
+++.++.+|++++...| +.++|..++.+..+.++ .+..+..|++++.. +|. ..+|..++.++. .+|+.+.
T Consensus 29 ~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 29 DYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp CHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 47899999999999999 58999999999998874 46788899999975 454 799999999975 4678999
Q ss_pred HHHHHHHHHHhCCc-chHHHHHHHHHHHhh-------------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 72 ARHIFERLVQCHPY-NLSAWINFADFEMKM-------------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 72 A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~-------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
++.+|++++...+. ...+|..+..+.... +.+..|+..|+.+... .+.. +..+|..++.+..
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~-~~~~---s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL-IRGW---SVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTC---SHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH-Hhhc---cHHHHHHHHHHHh
Confidence 99999999995332 246677777765442 3445567777777766 5431 2568988888876
Q ss_pred hccccc-------hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 036703 138 MGCNCK-------ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW 210 (365)
Q Consensus 138 ~~~~~~-------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~ 210 (365)
..+ ..+++..+|++++..+|.. ..+|..|+.++...|+.+ .|+.+|++++.. |.+..+|
T Consensus 184 ---~~~~~~~~~~~~~Rv~~~ye~al~~~p~~--~~lW~~ya~~~~~~~~~~--------~ar~i~erAi~~-P~~~~l~ 249 (493)
T 2uy1_A 184 ---ENGMKLGGRPHESRMHFIHNYILDSFYYA--EEVYFFYSEYLIGIGQKE--------KAKKVVERGIEM-SDGMFLS 249 (493)
T ss_dssp ---TCTTCCCHHHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHH-CCSSHHH
T ss_pred ---cCCccCcchhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhC-CCcHHHH
Confidence 431 1456788999999988876 689999999998888754 688999999988 8876555
Q ss_pred HHHH----------------------------------------HHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhH
Q 036703 211 FDYI----------------------------------------RLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI 250 (365)
Q Consensus 211 ~~~~----------------------------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 250 (365)
+.++ .++.+.++.+.|+.+|+++ . .|... .
T Consensus 250 ~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~--------~ 319 (493)
T 2uy1_A 250 LYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVG--------P 319 (493)
T ss_dssp HHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCC--------H
T ss_pred HHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCC--------h
Confidence 4444 3344567789999999999 4 34321 2
Q ss_pred HHHHHHHHHHhhccC-ChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHH
Q 036703 251 YLWINYALYKEVDAG-DLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAW 328 (365)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 328 (365)
.+|+.++.++ ...+ +.+.|+.+|+.+++.. |+ +++|..+++++...|+.+.|+.+|+++ +.+..+|
T Consensus 320 ~v~i~~A~lE-~~~~~d~~~ar~ife~al~~~-------~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw 387 (493)
T 2uy1_A 320 HVFIYCAFIE-YYATGSRATPYNIFSSGLLKH-------PDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMW 387 (493)
T ss_dssp HHHHHHHHHH-HHHHCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHH
T ss_pred HHHHHHHHHH-HHHCCChHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHH
Confidence 3777777775 4444 7999999999999987 44 678889999999999999999999998 4579999
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhc
Q 036703 329 SKYTELEKSLDETERARAIFELAIA 353 (365)
Q Consensus 329 ~~~~~~~~~~g~~~~A~~~~~~a~~ 353 (365)
..+..++...|+.+.++++++++++
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999985
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=1.7e-25 Score=182.80 Aligned_cols=240 Identities=12% Similarity=0.101 Sum_probs=193.9
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIF 76 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~ 76 (365)
++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++..++ ...|..+|.++...|++++|+..|
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 97 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY 97 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999994333 345999999999999999999999
Q ss_pred HHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH-HHHHhccccchhHHHHHHHHHH
Q 036703 77 ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA-KFEEMGCNCKETDRARCIYKFA 155 (365)
Q Consensus 77 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~ 155 (365)
+++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+ +.+|..+| .++. .+++++
T Consensus 98 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~----~~~~~~l~~~~~~----~~~~~~-------- 160 (272)
T 3u4t_A 98 QAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTD----PKVFYELGQAYYY----NKEYVK-------- 160 (272)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCC----HHHHHHHHHHHHH----TTCHHH--------
T ss_pred HHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCc----HHHHHHHHHHHHH----HHHHHH--------
Confidence 9999999999999999999999999999999999999999 9988 99999999 6655 334444
Q ss_pred hccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHH
Q 036703 156 LDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN---QERVREVYER 232 (365)
Q Consensus 156 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~ 232 (365)
|+..|+++++.+|++..++..++.++...|+ +++|...|++
T Consensus 161 ------------------------------------A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 161 ------------------------------------ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp ------------------------------------HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 5555555556666666777777777777777 8888999998
Q ss_pred HHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHH
Q 036703 233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEME 301 (365)
Q Consensus 233 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 301 (365)
+++.....+... -...+.++..++.++ ...|++++|+..|+++++..|+. +..+..++.+.
T Consensus 205 a~~~~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~ 265 (272)
T 3u4t_A 205 LIEVCAPGGAKY-KDELIEANEYIAYYY-TINRDKVKADAAWKNILALDPTN------KKAIDGLKMKL 265 (272)
T ss_dssp HHHHHGGGGGGG-HHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHC---
T ss_pred HHHHHhcccccc-hHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCccH------HHHHHHhhhhh
Confidence 888753222111 111245777888887 58999999999999999998432 44555444443
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=1.8e-25 Score=183.62 Aligned_cols=274 Identities=9% Similarity=0.023 Sum_probs=168.3
Q ss_pred HHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHH
Q 036703 29 MEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRA 106 (365)
Q Consensus 29 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A 106 (365)
-....|++.+|+..++++...+|+ ......++..+...|+++.|+..++. .+|.+..++..++.++...|+.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344556666666666666555555 23445556666666666666665544 2444555666666666666666666
Q ss_pred HHHHHHHHhhh-hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh
Q 036703 107 RNVYECAVEIF-LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE 185 (365)
Q Consensus 107 ~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (365)
++.+++++... .|++ +.++..+|.++. ..|++++|+..|++ |.+ ...+...+.++...|+.+
T Consensus 85 ~~~l~~ll~~~~~P~~----~~~~~~la~~~~---~~g~~~~Al~~l~~-----~~~--~~~~~~l~~~~~~~g~~~--- 147 (291)
T 3mkr_A 85 VAELDREMSRSVDVTN----TTFLLMAASIYF---YDQNPDAALRTLHQ-----GDS--LECMAMTVQILLKLDRLD--- 147 (291)
T ss_dssp HHHHHHHHHSCCCCSC----HHHHHHHHHHHH---HTTCHHHHHHHHTT-----CCS--HHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHhcccCCCC----HHHHHHHHHHHH---HCCCHHHHHHHHhC-----CCC--HHHHHHHHHHHHHCCCHH---
Confidence 66666666541 2555 666666666666 66666666666665 333 455666666666666644
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703 186 DAIAGKMRLQYEDGVRKNPMNYDTWFD--YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD 263 (365)
Q Consensus 186 ~~~~~~a~~~~~~~l~~~p~~~~~~~~--~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
.|...|+++++.+|++...... +..+....|++++|..+|+++++..|+++ .++...|.++ ..
T Consensus 148 -----~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~---------~~~~~la~~~-~~ 212 (291)
T 3mkr_A 148 -----LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL---------LLLNGQAACH-MA 212 (291)
T ss_dssp -----HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH---------HHHHHHHHHH-HH
T ss_pred -----HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHH-HH
Confidence 4666666666666666433322 22333445667777777777777766653 2566666665 46
Q ss_pred cCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCcc-HHHHHHHHHhhCcchHHHHHHHHHHHhhccch
Q 036703 264 AGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDP-CRKLYEKYLEWSPENCYAWSKYTELEKSLDET 341 (365)
Q Consensus 264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 341 (365)
.|++++|+..|++++... |+ ++.+..+|.++...|+.++ +..+++++++.+|+++.+. .+..+.+.+
T Consensus 213 ~g~~~eA~~~l~~al~~~-------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~f 281 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKD-------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDF 281 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHH
Confidence 677777777777777766 43 5566777777777777754 4577777777777777654 345555666
Q ss_pred hHHHHHH
Q 036703 342 ERARAIF 348 (365)
Q Consensus 342 ~~A~~~~ 348 (365)
+++..-|
T Consensus 282 d~~~~~~ 288 (291)
T 3mkr_A 282 DRLVLQY 288 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-25 Score=177.06 Aligned_cols=242 Identities=12% Similarity=0.015 Sum_probs=209.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh---hhHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH---DEAEQLF 129 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~ 129 (365)
...|..+|..+...|++++|...|+++++.+ +++.++..+|.++...|++++|+..++++++. .|... +....++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-GREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccccchHHHHHHH
Confidence 4577888899999999999999999999988 78999999999999999999999999999998 76531 1226899
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 209 (365)
..+|.++. ..|++++|+..|+++++..|.. .++... |+ .++|...+++++..+|.+..+
T Consensus 83 ~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~---~~~~~~-------~~--------~~~a~~~~~~~~~~~~~~~~~ 141 (258)
T 3uq3_A 83 ARIGNAYH---KLGDLKKTIEYYQKSLTEHRTA---DILTKL-------RN--------AEKELKKAEAEAYVNPEKAEE 141 (258)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHHHCCCH---HHHHHH-------HH--------HHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHH---HcccHHHHHHHHHHHHhcCchh---HHHHHH-------hH--------HHHHHHHHHHHHHcCcchHHH
Confidence 99999999 9999999999999999988873 233322 22 236899999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcch
Q 036703 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME 289 (365)
Q Consensus 210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 289 (365)
+..+|.++...|++++|...|++++...|.+.. ++..++..+ ...|++++|+..++++++.. |
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~al~~~-------~ 204 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAAL-AKLMSFPEAIADCNKAIEKD-------P 204 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH---------HHHHHHHHH-HHhCCHHHHHHHHHHHHHhC-------H
Confidence 999999999999999999999999999998753 778888887 68999999999999999987 5
Q ss_pred h-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhC------cchHHHHHHHHHH
Q 036703 290 E-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWS------PENCYAWSKYTEL 334 (365)
Q Consensus 290 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~ 334 (365)
+ +..+..+|.++...|++++|...|+++++.+ |++..++..+..+
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 5 7788999999999999999999999999998 8888888877654
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.1e-24 Score=178.91 Aligned_cols=246 Identities=12% Similarity=-0.022 Sum_probs=139.3
Q ss_pred hhhHHHHHHHHHHhCCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRV-DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
|+.|+..++++...+|++ ......+++.+...|+++.|+..++.. +|. ..++..++.++...|+.++|+..++++
T Consensus 15 y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 15 YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 455555555555555554 234555566666666666666555431 222 345555556666666666666666666
Q ss_pred HHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 80 VQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 80 l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
+.. +|+++.++..+|.++...|++++|++.+++ |.+ ..++..++.++. ..|++++|+..|+++++
T Consensus 92 l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~----~~~~~~l~~~~~---~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 92 MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDS----LECMAMTVQILL---KLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCS----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCC----HHHHHHHHHHHH---HCCCHHHHHHHHHHHHh
Confidence 554 466666666666666666666666666654 333 556666666666 66666666666666666
Q ss_pred cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703 158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANV 237 (365)
Q Consensus 158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 237 (365)
..|......+...+..+....|. .++|...|+++++.+|+++.+|..+|.++...|++++|...|++++..+
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~--------~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEK--------LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTH--------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCcCcHHHHHHHHHHHHHhCchH--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 65554222222223333322232 2246666666666666666666666666666666666666666666666
Q ss_pred CCchhhhHHHHhHHHHHHHHHHHhhccCChhH-HHHHHHHHHhcc
Q 036703 238 PPAEEKRYWQRYIYLWINYALYKEVDAGDLER-TRDVYRTLFIFY 281 (365)
Q Consensus 238 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~a~~~~ 281 (365)
|.++. ++.+++.++ ...|+.++ +..+++++++..
T Consensus 231 p~~~~---------~l~~l~~~~-~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPE---------TLINLVVLS-QHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHH---------HHHHHHHHH-HHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHH---------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHhC
Confidence 66543 555555554 35555543 455666666665
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=193.27 Aligned_cols=309 Identities=12% Similarity=0.008 Sum_probs=253.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCc
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQC------HPY 85 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~ 85 (365)
+.....+...|..+...|++++|+..|+++++..|. ..+|..++.++...|++++|...+++++.. .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344677899999999999999999999999999988 257889999999999999999999999886 445
Q ss_pred chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccch-------------------
Q 036703 86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKE------------------- 144 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------- 144 (365)
...++..+|.++...|++++|+..++++++. .|.. ......++..+|.++. ..|+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDI-SRELNDKVGEARALYNLGNVYH---AKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHH---HHHHTCC-------CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhcccccchHHHHHHHHHHHH---HcCCcccccccchhhhhhhhHHH
Confidence 5778999999999999999999999999998 6542 2233568899999999 9999
Q ss_pred -hHHHHHHHHHHhccCCC----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH------HHHHH
Q 036703 145 -TDRARCIYKFALDRIPK----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD------TWFDY 213 (365)
Q Consensus 145 -~~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~------~~~~~ 213 (365)
+++|+..+++++...+. ......+..++.++...|+++ .|+..+++++...|.... ++..+
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~l 233 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR--------DAVIAHEQRLLIAKEFGDKAAERRAYSNL 233 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999875321 113557778888888888865 699999999987655433 88999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HH
Q 036703 214 IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RR 292 (365)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~ 292 (365)
|.++...|++++|...+++++...|...... ....++..++.++ ...|++++|+..+++++...+..... +. ..
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~ 308 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRA---VEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELNDR-IGEGR 308 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCcCch---HHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHhcCCc-HHHHH
Confidence 9999999999999999999998755432110 1144677788887 69999999999999999986544332 22 67
Q ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHhhC------cchHHHHHHHHHHHhhccchh
Q 036703 293 IFKKYIEMELCLGNIDPCRKLYEKYLEWS------PENCYAWSKYTELEKSLDETE 342 (365)
Q Consensus 293 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~g~~~ 342 (365)
.+..++.++...|++++|...|+++++.. +....++..++.++...|+..
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 88899999999999999999999999883 334678899999999999763
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-24 Score=175.23 Aligned_cols=229 Identities=8% Similarity=-0.015 Sum_probs=208.8
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-------hHHH
Q 036703 18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-------LSAW 90 (365)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~ 90 (365)
+.+..|..+|.++...|++++|+..|+++++.+++..+|..++.++...|++++|...++++++..|++ +.++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 457789999999999999999999999999988448899999999999999999999999999999876 7899
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHH
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 170 (365)
..+|.++...|++++|+..|+++++. .|. +.++. ..|++++|+..+++++...|.. ..++..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~------------~~~~~---~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 144 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE-HRT------------ADILT---KLRNAEKELKKAEAEAYVNPEK--AEEARL 144 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CCC------------HHHHH---HHHHHHHHHHHHHHHHHCCHHH--HHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc-Cch------------hHHHH---HHhHHHHHHHHHHHHHHcCcch--HHHHHH
Confidence 99999999999999999999999999 765 23466 7899999999999999988775 678888
Q ss_pred HHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhH
Q 036703 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI 250 (365)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 250 (365)
++..+...|+.+ .|+..|++++..+|.+..++..+|.++...|++++|...|+++++..|.+..
T Consensus 145 ~~~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------- 208 (258)
T 3uq3_A 145 EGKEYFTKSDWP--------NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR-------- 208 (258)
T ss_dssp HHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------
T ss_pred HHHHHHHhcCHH--------HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH--------
Confidence 999999999866 7999999999999999999999999999999999999999999999999753
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703 251 YLWINYALYKEVDAGDLERTRDVYRTLFIFYF 282 (365)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 282 (365)
.+..++..+ ...|++++|+..|+++++..|
T Consensus 209 -~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 209 -AYIRKATAQ-IAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp -HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHH-HHHhhHHHHHHHHHHHHHhCh
Confidence 788888887 599999999999999999873
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=8.5e-25 Score=172.07 Aligned_cols=198 Identities=16% Similarity=0.094 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...|..++..+...|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..|+++++. .|++ ..++..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~----~~a~~~l 79 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-TPRY----LGGYMVL 79 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999 9998 9999999
Q ss_pred HHHHHhcccc-----------chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703 133 AKFEEMGCNC-----------KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR 201 (365)
Q Consensus 133 ~~~~~~~~~~-----------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 201 (365)
|.++. .. |++++|+..|+++++..|.+ ...|..++.++...|+.+ +|+..|+++++
T Consensus 80 g~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~ 146 (217)
T 2pl2_A 80 SEAYV---ALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERD--------KAEASLKQALA 146 (217)
T ss_dssp HHHHH---HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHH
T ss_pred HHHHH---HhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChH--------HHHHHHHHHHh
Confidence 99999 99 99999999999999999987 678999999999999866 79999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703 202 KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI 279 (365)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 279 (365)
.+ +++.++..+|.++...|++++|+..|+++++..|++.. ++..++.++ ...|++++|+..|+++-.
T Consensus 147 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~---------~~~~la~~~-~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 147 LE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD---------LRVRYASAL-LLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHH-TC----------------
T ss_pred cc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHccCHHHHHHHHHHHhh
Confidence 99 99999999999999999999999999999999999854 778888887 699999999999988754
No 42
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=7.5e-23 Score=181.22 Aligned_cols=309 Identities=11% Similarity=-0.053 Sum_probs=191.2
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhhCCChHHHHHHHHHHHH----hccHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEEN----LGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR----YNEVQRA 72 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A 72 (365)
++++|+..|+++.+. .++.++..+|.++.. .+++++|+..|+++.+.. ++..+..++.++.. .+++++|
T Consensus 58 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 345666666666654 345566666666666 666666666666665532 24555556666555 5566666
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cch
Q 036703 73 RHIFERLVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKE 144 (365)
Q Consensus 73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 144 (365)
...|+++... +++..+..+|.++.. .+++++|++.|+++++. . + +..+..++.++. . .++
T Consensus 135 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~--~----~~a~~~Lg~~y~---~g~g~~~~ 202 (490)
T 2xm6_A 135 VKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G--N----VWSCNQLGYMYS---RGLGVERN 202 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T--C----HHHHHHHHHHHH---HTSSSCCC
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C--C----HHHHHHHHHHHh---cCCCCCcC
Confidence 6666665543 345555566665555 45556666666655544 1 2 444455555554 4 444
Q ss_pred hHHHHHHHHHHhccCCCc--------------------------------hhHHHHHHHHHHHHH----cCCchhhhHHH
Q 036703 145 TDRARCIYKFALDRIPKG--------------------------------RAEDLYRKFLAFEKQ----YGDREGIEDAI 188 (365)
Q Consensus 145 ~~~A~~~~~~~l~~~p~~--------------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~ 188 (365)
+++|+.+|+++++..+.. .....+..++.++.. .++
T Consensus 203 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d-------- 274 (490)
T 2xm6_A 203 DAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKE-------- 274 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCC--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC--------
Confidence 444444444444321110 002233333333332 222
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703 189 AGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV-----GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD 263 (365)
Q Consensus 189 ~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
.++|+..|+++.+. .++.++..++.++... +++++|...|+++.+..+.. .+..++.++. .
T Consensus 275 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~-----------a~~~lg~~y~-~ 340 (490)
T 2xm6_A 275 PLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT-----------AQANLGAIYF-R 340 (490)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHH-h
Confidence 23566777776654 4566777777777665 67777777777777653322 5556666653 3
Q ss_pred cC---ChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703 264 AG---DLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 264 ~~---~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 336 (365)
.| ++++|+..|+++++. .++..+..++.++.. .+++++|..+|+++++.. ++.++..++.++.
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK--------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYY 410 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 34 678888888888876 346678888888888 789999999999998764 6888899999998
Q ss_pred h----ccchhHHHHHHHHHhcCcC
Q 036703 337 S----LDETERARAIFELAIAQPI 356 (365)
Q Consensus 337 ~----~g~~~~A~~~~~~a~~~~~ 356 (365)
. .++.++|...|+++++..|
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8 7899999999999998874
No 43
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=1.6e-22 Score=179.17 Aligned_cols=311 Identities=8% Similarity=-0.085 Sum_probs=214.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhhCCChHHHHHHHHHHHH----hccHHHHHHHH
Q 036703 5 GRNAWDRVVTLSPRVDQLWNNYIRMEEN----LGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR----YNEVQRARHIF 76 (365)
Q Consensus 5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~ 76 (365)
+...++++. .+.++.++..+|.++.. .+++++|+..|+++.+. .+..++..++.++.. .+++++|...|
T Consensus 26 ~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 455666555 46778999999999999 99999999999999986 347889999999998 89999999999
Q ss_pred HHHHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHH
Q 036703 77 ERLVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRA 148 (365)
Q Consensus 77 ~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A 148 (365)
+++.+. .++..+..+|.++.. .+++++|+..|+++.+. . + +..+..+|.++. . .+++++|
T Consensus 103 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~--~----~~a~~~Lg~~y~---~g~g~~~d~~~A 170 (490)
T 2xm6_A 103 KKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G--R----DSGQQSMGDAYF---EGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T--C----HHHHHHHHHHHH---HTSSSCCCHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C--C----HHHHHHHHHHHH---cCCCCCCCHHHH
Confidence 999875 478899999999998 78999999999999876 2 3 788999999998 7 7899999
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHH----cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----h
Q 036703 149 RCIYKFALDRIPKGRAEDLYRKFLAFEKQ----YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER----V 220 (365)
Q Consensus 149 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~----~ 220 (365)
+..|+++++.. + ...+..++.++.. .++.+ +|...|+++.+. .++.++..++.++.. .
T Consensus 171 ~~~~~~a~~~~--~--~~a~~~Lg~~y~~g~g~~~~~~--------~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 171 REWYSKAAEQG--N--VWSCNQLGYMYSRGLGVERNDA--------ISAQWYRKSATS--GDELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp HHHHHHHHHTT--C--HHHHHHHHHHHHHTSSSCCCHH--------HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHCC--C--HHHHHHHHHHHhcCCCCCcCHH--------HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC
Confidence 99999999852 2 4566777776665 44433 466666666553 345555555655554 5
Q ss_pred CCHHHHHHHHHHHHhcCCCchhhh--------------------HHH-----HhHHHHHHHHHHHhhcc-----CChhHH
Q 036703 221 GNQERVREVYERAIANVPPAEEKR--------------------YWQ-----RYIYLWINYALYKEVDA-----GDLERT 270 (365)
Q Consensus 221 ~~~~~A~~~~~~~~~~~p~~~~~~--------------------~~~-----~~~~~~~~~~~~~~~~~-----~~~~~a 270 (365)
+++++|+..|++++...+...... .+. .....+..++.++. .. +++++|
T Consensus 237 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~-~~~~g~~~~~~~A 315 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYD-KGAEGVAKNREQA 315 (490)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HCBTTBCCCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-cCCCCCcCCHHHH
Confidence 555666666655554422110000 000 00113334444442 22 455666
Q ss_pred HHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhC---CCccHHHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhH
Q 036703 271 RDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLG---NIDPCRKLYEKYLEWSPENCYAWSKYTELEKS----LDETER 343 (365)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~ 343 (365)
+..|+++++.. .+..+..++.++...| ++++|..+|+++++. .++.++..++.++.. .+++++
T Consensus 316 ~~~~~~a~~~~--------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 316 ISWYTKSAEQG--------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHhcC--------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 66666655542 2345556666665544 566777777777665 356677777777776 667777
Q ss_pred HHHHHHHHhcCc
Q 036703 344 ARAIFELAIAQP 355 (365)
Q Consensus 344 A~~~~~~a~~~~ 355 (365)
|...|+++++..
T Consensus 386 A~~~~~~A~~~~ 397 (490)
T 2xm6_A 386 AAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 777777776643
No 44
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=5.3e-24 Score=184.52 Aligned_cols=291 Identities=11% Similarity=0.005 Sum_probs=236.2
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h----HHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCcc
Q 036703 18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H----EGWLSYIKFKLRYNEVQRARHIFERLVQC------HPYN 86 (365)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~ 86 (365)
.....+..+|..+...|++++|+..|+++++..|+ . .+|..++.++...|++++|...|++++.. .|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34556778999999999999999999999999998 2 57889999999999999999999999987 5777
Q ss_pred hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccch-----------------hHH
Q 036703 87 LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKE-----------------TDR 147 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 147 (365)
..++..+|.++...|++++|+..|+++++. .+.. .+....++..+|.++. ..|+ +++
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTL-ARQLGDRLSEGRALYNLGNVYH---AKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHH---HHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhhchHHHHHHHHHHHHHHH---HcCcccccccchhhhhhhhHHHHH
Confidence 889999999999999999999999999987 5421 2445778999999999 9999 999
Q ss_pred HHHHHHHHhccCCC----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHH
Q 036703 148 ARCIYKFALDRIPK----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD------TWFDYIRLE 217 (365)
Q Consensus 148 A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~------~~~~~~~~~ 217 (365)
|+..+++++...+. ......+..++.++...|+.+ +|+..|++++...|.... ++..++.++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ--------AAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999998875322 113457777888888888865 688999999887665433 788999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHH
Q 036703 218 ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKY 297 (365)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 297 (365)
...|++++|...|++++...+...... ....++..++.++ ...|++++|+..+++++...+...........+..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGERE---VEAQSCYSLGNTY-TLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999999999998765431110 1134677788887 589999999999999998854332210115678889
Q ss_pred HHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703 298 IEMELCLGNIDPCRKLYEKYLEWSPEN 324 (365)
Q Consensus 298 ~~~~~~~~~~~~A~~~~~~al~~~p~~ 324 (365)
+.++...|++++|...|+++++..+..
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987743
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=9.4e-24 Score=182.47 Aligned_cols=296 Identities=8% Similarity=-0.029 Sum_probs=240.1
Q ss_pred ChhhHHHHHHHHHHhCCCch----HHHHHHHHHHHhcCChhHHHHHHHHHHhhC------CC-hHHHHHHHHHHHHhccH
Q 036703 1 FIDHGRNAWDRVVTLSPRVD----QLWNNYIRMEENLGNVAGARQIFERWMHWM------PD-HEGWLSYIKFKLRYNEV 69 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~-~~~~~~~~~~~~~~~~~ 69 (365)
++++|+..|++++...|+++ .+|..+|.++...|++++|+..|++++... |. ..++..++.++...|++
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 103 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 103 (406)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCH
Confidence 57899999999999999984 678999999999999999999999998763 22 56888999999999999
Q ss_pred HHHHHHHHHHHHhCCcc------hHHHHHHHHHHHhhcc--------------------hHHHHHHHHHHHhhhhcCC--
Q 036703 70 QRARHIFERLVQCHPYN------LSAWINFADFEMKMGE--------------------VDRARNVYECAVEIFLADD-- 121 (365)
Q Consensus 70 ~~A~~~~~~~l~~~p~~------~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~a~~~~~~~~-- 121 (365)
++|...+++++...|.. ..++..+|.++...|+ +++|+..+++++.. .+..
T Consensus 104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~-~~~~~~ 182 (406)
T 3sf4_A 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL-VTALGD 182 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH-HHhccC
Confidence 99999999999987654 4589999999999999 99999999999886 4321
Q ss_pred hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHH
Q 036703 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYE 197 (365)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 197 (365)
.+....++..+|.++. ..|++++|+..|+++++..|... ....+..++.++...|+.+ +|...++
T Consensus 183 ~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~ 251 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHY---LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE--------TASEYYK 251 (406)
T ss_dssp HHHHHHHHHHHHHHHH---HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHH
T ss_pred cHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH--------HHHHHHH
Confidence 2444678999999999 99999999999999998654422 2347778888888999866 6999999
Q ss_pred HHHHcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHH
Q 036703 198 DGVRKNPMN------YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTR 271 (365)
Q Consensus 198 ~~l~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 271 (365)
+++...|.. ..++..+|.++...|++++|...|++++...+..... .....++..++.++ ...|++++|+
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~-~~~g~~~~A~ 327 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR---IGEGRACWSLGNAY-TALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHH-HHHTCHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHH-HHcCCHHHHH
Confidence 999876655 6788999999999999999999999999874432210 01144777788887 5899999999
Q ss_pred HHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHH
Q 036703 272 DVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKL 313 (365)
Q Consensus 272 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~ 313 (365)
..++++++..+..... +. ...+..++.++...|+...+...
T Consensus 328 ~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~ 369 (406)
T 3sf4_A 328 HFAEKHLEISREVGDK-SGELTARLNLSDLQMVLGLSYSTNNS 369 (406)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhhHhHHHHHH
Confidence 9999999985544332 22 67788899999999887554333
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=1.1e-23 Score=177.03 Aligned_cols=286 Identities=12% Similarity=0.014 Sum_probs=178.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCcchH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQC------HPYNLS 88 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~ 88 (365)
...+...|..+...|++++|+..|+++++..|+ ..++..++.++...|++++|...+++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 456788899999999999999999999999988 257888999999999999999999999886 445578
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccch--------------------hH
Q 036703 89 AWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKE--------------------TD 146 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 146 (365)
++..+|.++...|++++|+..++++++. .+.. ......++..++.++. ..|+ ++
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDI-SRELNDKVGEARALYNLGNVYH---AKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH---HHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH-HHHhcCchHHHHHHHHHHHHHH---HcCcccccchhhhhhhhhhhHHHHHH
Confidence 8999999999999999999999999988 6543 2233558889999999 9999 88
Q ss_pred HHHHHHHHHhccCCC----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHH
Q 036703 147 RARCIYKFALDRIPK----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN------YDTWFDYIRL 216 (365)
Q Consensus 147 ~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~------~~~~~~~~~~ 216 (365)
+|+..+++++...+. ......+..++.++...|+.+ .|+..+++++...|.. ..++..++.+
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR--------DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 888888777654221 111234444455555555533 3555555555433221 1245555555
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHH
Q 036703 217 EERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKK 296 (365)
Q Consensus 217 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 296 (365)
+...|++++|...+++++...+...... ....++..++.++ ...|++++|+..+++++...+...........+..
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 308 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLARQLKDRA---VEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 5555555555555555554432211000 0122333444444 34555555555555555443221110000233444
Q ss_pred HHHHHHHhCCCccHHHHHHHHHhhC
Q 036703 297 YIEMELCLGNIDPCRKLYEKYLEWS 321 (365)
Q Consensus 297 ~~~~~~~~~~~~~A~~~~~~al~~~ 321 (365)
++.++...|++++|...|+++++..
T Consensus 309 la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 309 LGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=2.9e-23 Score=167.49 Aligned_cols=211 Identities=11% Similarity=0.043 Sum_probs=196.9
Q ss_pred HhCCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHH
Q 036703 14 TLSPRV-DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI 91 (365)
Q Consensus 14 ~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 91 (365)
..+|.+ +.+|..+|.++...|++++|+..|+++++..|. ..+|..++.++...|++++|...|+++++.+|.+..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 346766 788999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHh--hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHH
Q 036703 92 NFADFEMKMGEVDRARNVYECAVE--IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYR 169 (365)
Q Consensus 92 ~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 169 (365)
.++.++...|++++|++.|+++++ . .|.+ ..++..+|.++. ..|++++|+..|+++++..|.+ ...+.
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 179 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTL-YPER----SRVFENLGLVSL---QMKKPAQAKEYFEKSLRLNRNQ--PSVAL 179 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTT-CTTH----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSCC--HHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCcc-Cccc----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCccc--HHHHH
Confidence 999999999999999999999999 6 6665 899999999999 9999999999999999998876 67888
Q ss_pred HHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 170 KFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
.++.++...|+.+ +|...++++++..|.+..++..++.++...|++++|...++++++..|.++.
T Consensus 180 ~la~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 180 EMADLLYKEREYV--------PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHTTCHH--------HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHcCCHH--------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 8899999999865 7999999999999999999999999999999999999999999999999864
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=3.3e-24 Score=175.32 Aligned_cols=241 Identities=14% Similarity=0.050 Sum_probs=198.4
Q ss_pred ChhhHHHHHHHHHHh----CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTL----SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHI 75 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~ 75 (365)
++++|+..|+++++. .|.++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|...
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 368999999999987 3567889999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703 76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA 155 (365)
Q Consensus 76 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 155 (365)
|+++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+ .......+ +.. ..|++++|+..++++
T Consensus 100 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~----~~~~~~~~-~~~---~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 100 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPND----PFRSLWLY-LAE---QKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHH-HHH---HHHCHHHHHHHHHHH
T ss_pred HHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCC----hHHHHHHH-HHH---HhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 8887 54444444 335 679999999999999
Q ss_pred hccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHH
Q 036703 156 LDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN----YDTWFDYIRLEERVGNQERVREVYE 231 (365)
Q Consensus 156 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~ 231 (365)
+...|... ..+. .+......++.. .|...+++++...|.. ..++..+|.++...|++++|...|+
T Consensus 171 ~~~~~~~~--~~~~-~~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 171 FEKSDKEQ--WGWN-IVEFYLGNISEQ--------TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHSCCCS--THHH-HHHHHTTSSCHH--------HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCcch--HHHH-HHHHHHHhcCHH--------HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99888763 2232 444444455433 6888888888776643 6899999999999999999999999
Q ss_pred HHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHH
Q 036703 232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY 274 (365)
Q Consensus 232 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 274 (365)
+++...|.+.. . ++..+ ...|++++|++.+
T Consensus 240 ~al~~~p~~~~---------~---~~~~~-~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 240 LAVANNVHNFV---------E---HRYAL-LELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCCTTCH---------H---HHHHH-HHHHHHHHC----
T ss_pred HHHhCCchhHH---------H---HHHHH-HHHHHHHhhHHHH
Confidence 99999997642 1 12222 3567777777665
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=1.2e-23 Score=168.73 Aligned_cols=205 Identities=13% Similarity=0.150 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
+..|..+|..+...|++++|+..|+++++.+|+ ...|..++.++...|++++|...|+++++.+|++..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 567899999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703 99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178 (365)
Q Consensus 99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 178 (365)
..|++++|+..|+++++. .|.+ ..++..++.++. ..|++++|+..++++++..|.+ ...+..++..+...
T Consensus 103 ~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRA-GMEN----GDLFYMLGTVLV---KLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANE 172 (243)
T ss_dssp HTTCHHHHHHHHHHHHHH-TCCS----HHHHHHHHHHHH---HTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHc
Confidence 999999999999999999 9888 899999999999 9999999999999999998876 57888888889899
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
|+.+ +|+..+++++...|++..++..++.++...|++++|...|+++++..|++..
T Consensus 173 ~~~~--------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 173 GMLD--------EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp TCCH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred CCHH--------HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 9876 6999999999999999999999999999999999999999999999999864
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=7.3e-23 Score=162.05 Aligned_cols=210 Identities=12% Similarity=0.084 Sum_probs=196.0
Q ss_pred hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703 15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF 93 (365)
Q Consensus 15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 93 (365)
..|+++.+|..+|.++...|++++|+..|+++++..|+ ...|..++.++...|++++|...|++++..+|++..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 47888999999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred HHHHHhh-cchHHHHHHHHHHHh--hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHH
Q 036703 94 ADFEMKM-GEVDRARNVYECAVE--IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK 170 (365)
Q Consensus 94 ~~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 170 (365)
|.++... |++++|+..++++++ . .|.. ..++..+|.++. ..|++++|+..|+++++..|.+ ...+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~ 152 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPT-YPTP----YIANLNKGICSA---KQGQFGLAEAYLKRSLAAQPQF--PPAFKE 152 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTT-CSCH----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHSTTC--HHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcC-Ccch----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC--chHHHH
Confidence 9999999 999999999999999 5 5555 889999999999 9999999999999999998886 578888
Q ss_pred HHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP-MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
++..+...|+.+ +|...+++++...| .+...+..++.++...|+.+.|..+++.+.+..|+++.
T Consensus 153 la~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 153 LARTKMLAGQLG--------DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHTCHH--------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHcCCHH--------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 888888999865 69999999999999 99999999999999999999999999999999999864
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=2.6e-23 Score=170.01 Aligned_cols=249 Identities=10% Similarity=-0.019 Sum_probs=171.2
Q ss_pred HHhcCChhHHHHHHHHHHhhCC----C-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchH
Q 036703 30 EENLGNVAGARQIFERWMHWMP----D-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD 104 (365)
Q Consensus 30 ~~~~g~~~~A~~~~~~al~~~p----~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 104 (365)
....|++++|+..|+++++..| . ..+|..+|.++...|++++|...|++++..+|+++.+|..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3345667777777777776532 2 4567777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhh
Q 036703 105 RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGI 184 (365)
Q Consensus 105 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 184 (365)
+|+..|+++++. .|.+ ..++..+|.++. ..|++++|+..|+++++..|.+
T Consensus 95 ~A~~~~~~al~~-~~~~----~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~~~---------------------- 144 (275)
T 1xnf_A 95 AAYEAFDSVLEL-DPTY----NYAHLNRGIALY---YGGRDKLAQDDLLAFYQDDPND---------------------- 144 (275)
T ss_dssp HHHHHHHHHHHH-CTTC----THHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC----------------------
T ss_pred HHHHHHHHHHhc-Cccc----cHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCCC----------------------
Confidence 777777777777 6666 677777777777 7777777777777766666554
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc
Q 036703 185 EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA 264 (365)
Q Consensus 185 ~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (365)
.......+ +....|++++|...+++++...|++.. .+. .+..+ ...
T Consensus 145 ----------------------~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~-~~~~~-~~~ 190 (275)
T 1xnf_A 145 ----------------------PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQW---------GWN-IVEFY-LGN 190 (275)
T ss_dssp ----------------------HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCST---------HHH-HHHHH-TTS
T ss_pred ----------------------hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchH---------HHH-HHHHH-HHh
Confidence 22222222 123457788888888888887777642 232 33333 467
Q ss_pred CChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhH
Q 036703 265 GDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETER 343 (365)
Q Consensus 265 ~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 343 (365)
++.++|+..+++++...+... |. +..+..+|.++...|++++|...|+++++.+|++... ++..+...|++++
T Consensus 191 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~ 264 (275)
T 1xnf_A 191 ISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQ 264 (275)
T ss_dssp SCHHHHHHHHHHHCCSHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccccccc---ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHh
Confidence 777888888888887753211 12 5788889999999999999999999999999977543 3667777888888
Q ss_pred HHHHH
Q 036703 344 ARAIF 348 (365)
Q Consensus 344 A~~~~ 348 (365)
|.+.+
T Consensus 265 a~~~~ 269 (275)
T 1xnf_A 265 DQDDL 269 (275)
T ss_dssp C----
T ss_pred hHHHH
Confidence 88776
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=2.5e-23 Score=174.98 Aligned_cols=294 Identities=11% Similarity=0.008 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN----LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAEQ 127 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~ 127 (365)
..+...|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++.. .+. +.+....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-ARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhcccccHHHHH
Confidence 456778899999999999999999999999987 467889999999999999999999999876 432 1244577
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHHHHHHHHHHHcCC-------------chhhhHHHHH
Q 036703 128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLYRKFLAFEKQYGD-------------REGIEDAIAG 190 (365)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 190 (365)
++..+|.++. ..|++++|+..++++++..+... ....+..++.++...|+ .... ....+
T Consensus 85 ~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~ 160 (338)
T 3ro2_A 85 ASGNLGNTLK---VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV-RNALQ 160 (338)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH-HHHHH
T ss_pred HHHHHHHHHH---HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH-HHHHH
Confidence 8999999999 99999999999999998654322 24466667777776665 1110 01134
Q ss_pred HHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc
Q 036703 191 KMRLQYEDGVRK------NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA 264 (365)
Q Consensus 191 ~a~~~~~~~l~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (365)
+|...+++++.. .|....++..++.++...|++++|...+++++...+...... .....+..++..+ ...
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~-~~~ 236 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA---AERRAYSNLGNAY-IFL 236 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHH-HHc
Confidence 688888887764 233356789999999999999999999999998755432111 1134677788887 589
Q ss_pred CChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch------HHHHHHHHHHHhhc
Q 036703 265 GDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN------CYAWSKYTELEKSL 338 (365)
Q Consensus 265 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~ 338 (365)
|++++|+..+++++...+...........+..++.++...|++++|...+++++...|.. ..++..++.++...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 999999999999998865443221116788899999999999999999999999886543 55888999999999
Q ss_pred cchhHHHHHHHHHhcCcC
Q 036703 339 DETERARAIFELAIAQPI 356 (365)
Q Consensus 339 g~~~~A~~~~~~a~~~~~ 356 (365)
|++++|...|+++++..+
T Consensus 317 g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TCHHHHHHHHHHHHHC--
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 999999999999998876
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=3.5e-23 Score=166.01 Aligned_cols=203 Identities=12% Similarity=0.098 Sum_probs=184.4
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..|. ..+|..++.++...|++++|...|+++
T Consensus 38 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp ----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
++..|.++.++..+|.++...|++++|+..++++++. .|.+ ..++..+|.++. ..|++++|+..|+++++..
T Consensus 118 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NEND----TEARFQFGMCLA---NEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHTCCHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcc----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 8888 899999999999 9999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 036703 160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG 221 (365)
Q Consensus 160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 221 (365)
|.. ...+..++.++...|+.+ +|...|+++++.+|++..++..++.+....+
T Consensus 190 ~~~--~~~~~~la~~~~~~~~~~--------~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 190 PGH--ADAFYNAGVTYAYKENRE--------KALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTC--HHHHHHHHHHHHHTTCTT--------HHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred ccc--HHHHHHHHHHHHHccCHH--------HHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 876 578888999999999876 6999999999999999999988887654433
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=2.3e-23 Score=183.09 Aligned_cols=212 Identities=12% Similarity=0.032 Sum_probs=198.8
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCh-hHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNV-AGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++...++++....|.+..+|..+|.++...|++ ++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677788888888999999999999999999999 9999999999999999 899999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhh---------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc--------
Q 036703 80 VQCHPYNLSAWINFADFEMKM---------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC-------- 142 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 142 (365)
++.+|+ ..++..+|.++... |++++|+..|+++++. .|.+ ..+|..+|.++. ..
T Consensus 164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~lg~~~~---~~~~~~~~~~ 234 (474)
T 4abn_A 164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-DVLD----GRSWYILGNAYL---SLYFNTGQNP 234 (474)
T ss_dssp HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHHHHTTCCH
T ss_pred HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHHHhhcccc
Confidence 999997 79999999999999 9999999999999999 9988 999999999999 88
Q ss_pred chhHHHHHHHHHHhccCC---CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 036703 143 KETDRARCIYKFALDRIP---KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER 219 (365)
Q Consensus 143 ~~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~ 219 (365)
|++++|+..|+++++..| .+ ...|..++.++...|+++ +|+..|+++++.+|++..++..++.++..
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYG--------EALEGFSQAAALDPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999988 54 789999999999999866 79999999999999999999999999999
Q ss_pred hCCHHHHHHHHHH
Q 036703 220 VGNQERVREVYER 232 (365)
Q Consensus 220 ~~~~~~A~~~~~~ 232 (365)
.|++++|...+.+
T Consensus 305 lg~~~eAi~~~~~ 317 (474)
T 4abn_A 305 LSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcc
Confidence 9999998876654
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=1.7e-23 Score=181.38 Aligned_cols=295 Identities=9% Similarity=0.013 Sum_probs=234.9
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch----HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL----SAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAE 126 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~ 126 (365)
...+...+..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|+++++. ... +.+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL-AKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHccCchHHH
Confidence 34567788999999999999999999999999876 58999999999999999999999999886 421 124457
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC----chhHHHHHHHHHHHHHcCC----------chhhhHHHHHHH
Q 036703 127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK----GRAEDLYRKFLAFEKQYGD----------REGIEDAIAGKM 192 (365)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~a 192 (365)
.++..+|.++. ..|++++|+..|++++...+. ......+..++.++...|+ .... ....++|
T Consensus 127 ~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a-~~~~~~A 202 (411)
T 4a1s_A 127 KSSGNLGNTLK---VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV-KEALTRA 202 (411)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH-HHHHHHH
T ss_pred HHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh-hHHHHHH
Confidence 88999999999 999999999999999986332 1235577777777777776 1110 1113368
Q ss_pred HHHHHHHHHcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC
Q 036703 193 RLQYEDGVRKN------PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD 266 (365)
Q Consensus 193 ~~~~~~~l~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (365)
+..++++++.. |....++..+|.++...|++++|...|++++...|...... ....++..++.++ ...|+
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~-~~~g~ 278 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---AERRANSNLGNSH-IFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHH-HTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHH-HHCcC
Confidence 88888887753 23346889999999999999999999999998866532111 1234677788887 69999
Q ss_pred hhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc------hHHHHHHHHHHHhhccc
Q 036703 267 LERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE------NCYAWSKYTELEKSLDE 340 (365)
Q Consensus 267 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~ 340 (365)
+++|+..|++++...+.....+.....+..++.++...|++++|..+|++++...++ ...++..++.++...|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 999999999999987544322112678899999999999999999999999988554 35589999999999999
Q ss_pred hhHHHHHHHHHhcCcC
Q 036703 341 TERARAIFELAIAQPI 356 (365)
Q Consensus 341 ~~~A~~~~~~a~~~~~ 356 (365)
+++|...|+++++..+
T Consensus 359 ~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 359 HERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=1.8e-21 Score=158.98 Aligned_cols=234 Identities=9% Similarity=0.018 Sum_probs=162.3
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCcchHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR----YNEVQRARHIFERLVQCHPYNLSAW 90 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~ 90 (365)
+|+++.++..+|.++...|++++|+..|+++++ |+ ..++..++.++.. .+++++|...|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 466777788888888888888888888888877 44 5677777777777 778888888888877764 67777
Q ss_pred HHHHHHHHh----hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHhccCCCc
Q 036703 91 INFADFEMK----MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 91 ~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~ 162 (365)
..+|.++.. .+++++|+..|+++++. . + +.++..+|.++. . .+++++|+..|+++++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~--~----~~a~~~lg~~~~---~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL-K--Y----AEGCASLGGIYH---DGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T--C----HHHHHHHHHHHH---HCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc-C--C----ccHHHHHHHHHH---cCCCcccCHHHHHHHHHHHHhcC---
Confidence 777877777 77788888888877766 3 3 667777777777 6 666666666666665432
Q ss_pred hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCC
Q 036703 163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER----VGNQERVREVYERAIANVP 238 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p 238 (365)
+..++..++.++.. .+++++|+..|+++++..+
T Consensus 145 -------------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 181 (273)
T 1ouv_A 145 -------------------------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD 181 (273)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------------------------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 23445555666555 6677777777777776532
Q ss_pred CchhhhHHHHhHHHHHHHHHHHhhc----cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH----hCCCccH
Q 036703 239 PAEEKRYWQRYIYLWINYALYKEVD----AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC----LGNIDPC 310 (365)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A 310 (365)
. ..+..++.++ .. .+++++|+..|+++++.. | +..+..++.++.. .+++++|
T Consensus 182 ~-----------~a~~~lg~~~-~~g~~~~~~~~~A~~~~~~a~~~~-------~-~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 182 S-----------PGCFNAGNMY-HHGEGATKNFKEALARYSKACELE-------N-GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp H-----------HHHHHHHHHH-HHTCSSCCCHHHHHHHHHHHHHTT-------C-HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred H-----------HHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHhCC-------C-HHHHHHHHHHHHcCCCcccCHHHH
Confidence 2 2455566665 35 677777777777777763 2 4566677777777 7888888
Q ss_pred HHHHHHHHhhCcchHHHHH
Q 036703 311 RKLYEKYLEWSPENCYAWS 329 (365)
Q Consensus 311 ~~~~~~al~~~p~~~~~~~ 329 (365)
.++|+++++..|++...++
T Consensus 242 ~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 242 IENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 8888888888876555443
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=2.3e-22 Score=154.16 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA 133 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (365)
.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++.. .|.. ..++..++
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~----~~~~~~~~ 80 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTS----AEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCC----HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-Cchh----HHHHHHHH
Confidence 344444444444444455555555555445544444555555554455555555555554444 4444 44444444
Q ss_pred HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY 213 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~ 213 (365)
.++. ..++++.|...+.+++...|.+ ...+..++..+...|+++ +|+..|+++++.+|+++.+|..+
T Consensus 81 ~~~~---~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~--------~A~~~~~~~l~~~p~~~~~~~~l 147 (184)
T 3vtx_A 81 SANF---MIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHD--------KAIEAYEKTISIKPGFIRAYQSI 147 (184)
T ss_dssp HHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHH---HcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCch--------hHHHHHHHHHHhcchhhhHHHHH
Confidence 4444 4444555555555544444443 334444444444455433 45556666666677777788888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 214 IRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
|.++...|++++|+..|+++++.+|.+
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 888888888888888888888887765
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=1.9e-22 Score=154.59 Aligned_cols=173 Identities=13% Similarity=0.133 Sum_probs=161.7
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703 18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF 96 (365)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 96 (365)
+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...+.+++...|+++.++..++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703 97 EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 176 (365)
+...++++.|...+.+++.. .|.+ ..++..+|.++. ..|++++|+..|+++++..|.+ ...|..++..+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~-~~~~----~~~~~~lg~~~~---~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~ 152 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL-NTVY----ADAYYKLGLVYD---SMGEHDKAIEAYEKTISIKPGF--IRAYQSIGLAYE 152 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-Cccc----hHHHHHHHHHHH---HhCCchhHHHHHHHHHHhcchh--hhHHHHHHHHHH
Confidence 99999999999999999999 9888 999999999999 9999999999999999999987 678999999999
Q ss_pred HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH
Q 036703 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD 208 (365)
Q Consensus 177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~ 208 (365)
..|+.+ +|+..|+++++.+|+++.
T Consensus 153 ~~g~~~--------~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 153 GKGLRD--------EAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HTTCHH--------HHHHHHHHHHHTTHHHHH
T ss_pred HCCCHH--------HHHHHHHHHHhCCccCHH
Confidence 999866 799999999999997643
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=2.1e-21 Score=156.53 Aligned_cols=194 Identities=11% Similarity=0.043 Sum_probs=181.5
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|++++..+|.+..+|..+|.++...|++++|+..|+++++..|. ...|..++.++...|++++|...|+++
T Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 52 NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131 (252)
T ss_dssp CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred HH--hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 80 VQ--CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 80 l~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
+. ..|.+..++..+|.++...|++++|+..|+++++. .|.+ ..++..++.++. ..|++++|...++++++
T Consensus 132 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~la~~~~---~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 132 SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NRNQ----PSVALEMADLLY---KEREYVPARQYYDLFAQ 203 (252)
T ss_dssp TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHT
T ss_pred HhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-Cccc----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHH
Confidence 99 88989999999999999999999999999999999 9888 999999999999 99999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 036703 158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD 212 (365)
Q Consensus 158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~ 212 (365)
..|.. ...+..++.++...|+.+ +|...++++++.+|+++.++..
T Consensus 204 ~~~~~--~~~~~~~~~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 204 GGGQN--ARSLLLGIRLAKVFEDRD--------TAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp TSCCC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTSHHHHHH
T ss_pred hCcCc--HHHHHHHHHHHHHccCHH--------HHHHHHHHHHHHCCCCHHHHHH
Confidence 98876 567888888888889865 6999999999999999876543
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=1.9e-21 Score=153.88 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=123.4
Q ss_pred CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHH
Q 036703 50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQL 128 (365)
Q Consensus 50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 128 (365)
.|+ ...|..++..+...|++++|...|+++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+ ..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~ 78 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDS----AEI 78 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCC----hHH
Confidence 344 5778888888888888888888888888888888888888888888888888888888888888 7777 778
Q ss_pred HHHHHHHHHhcccc-chhHHHHHHHHHHhc--cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC
Q 036703 129 FVAFAKFEEMGCNC-KETDRARCIYKFALD--RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM 205 (365)
Q Consensus 129 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~ 205 (365)
+..++.++. .. |++++|+..|+++++ ..|. ....+..++..+...|+.+ +|+..|+++++..|.
T Consensus 79 ~~~l~~~~~---~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 79 NNNYGWFLC---GRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQFG--------LAEAYLKRSLAAQPQ 145 (225)
T ss_dssp HHHHHHHHH---TTTCCHHHHHHHHHHHHTSTTCSC--HHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHH---HhcCcHHHHHHHHHHHHcCcCCcc--hHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCC
Confidence 888888888 88 888888888888887 2222 2345555555555555543 456666666666666
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703 206 NYDTWFDYIRLEERVGNQERVREVYERAIANVP 238 (365)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 238 (365)
+..++..++.++...|++++|...+++++...|
T Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666666666666666666666666666665555
No 61
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=1.4e-21 Score=170.63 Aligned_cols=307 Identities=11% Similarity=0.049 Sum_probs=181.5
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCh---hHHHHHHHHHHhhCCChHHHHHHHHHHHHhc-----cHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNV---AGARQIFERWMHWMPDHEGWLSYIKFKLRYN-----EVQRA 72 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~A 72 (365)
++++|...|+++... +++.++..+|.++...|+. ++|+..|+++++. ++.++..++.++...+ ++++|
T Consensus 18 ~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 18 DTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 367899999998765 5678888999999999988 8999999999977 5566777888555544 88999
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc----hhHHH
Q 036703 73 RHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK----ETDRA 148 (365)
Q Consensus 73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A 148 (365)
...|++++... ++.++..+|.++...+..+++.+.++.......+.+ +..+..++.++. ..+ ..+.+
T Consensus 94 ~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~----~~a~~~Lg~~y~---~~~~~~~~~~~a 164 (452)
T 3e4b_A 94 ESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY----PEAGLAQVLLYR---TQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC----TTHHHHHHHHHH---HHTCGGGGHHHH
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC----HHHHHHHHHHHH---cCCCcccCHHHH
Confidence 99999998854 456888889888887665544444443333311222 556677777776 555 33344
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCHH
Q 036703 149 RCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV----GNQE 224 (365)
Q Consensus 149 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~----~~~~ 224 (365)
..+++.+....|. .+..++.++...|.... ..+|+..|+++....|.+...++.+|.++... ++++
T Consensus 165 ~~~~~~a~~~~~~-----a~~~Lg~~~~~~g~~~~-----~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 165 ERICKAALNTTDI-----CYVELATVYQKKQQPEQ-----QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HHHHHHHTTTCTT-----HHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HHHHHHHHcCCHH-----HHHHHHHHHHHcCCccc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 4455555544443 45555555555553322 33677777777777777777777777776544 5777
Q ss_pred HHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHh--hccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHH
Q 036703 225 RVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKE--VDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMEL 302 (365)
Q Consensus 225 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (365)
+|+..|+++. |.++. .+..++.++. ...+++++|+..|+++.+. .++..+..+|.++.
T Consensus 235 ~A~~~~~~aa---~g~~~---------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 235 TAQALLEKIA---PGYPA---------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------DQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHHHG---GGSTH---------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCHH---------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH
Confidence 7777777776 44432 4555555421 2466777777777777754 23455666666665
Q ss_pred HhC-----CCccHHHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhHHHHHHHHHhcC
Q 036703 303 CLG-----NIDPCRKLYEKYLEWSPENCYAWSKYTELEKS----LDETERARAIFELAIAQ 354 (365)
Q Consensus 303 ~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~ 354 (365)
.| ++++|..+|+++. |.++.++..++.++.. ..+.++|...|+++.+.
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred -cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 44 7777777777776 6677777777776665 22677777777777654
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1e-20 Score=154.43 Aligned_cols=227 Identities=10% Similarity=-0.001 Sum_probs=162.2
Q ss_pred CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHhccC
Q 036703 84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRARCIYKFALDRI 159 (365)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~ 159 (365)
|+++.++..+|.++...|++++|+..|+++++. .+ +.++..+|.++. . .+++++|+..|+++++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~----~~a~~~lg~~~~---~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KE----NSGCFNLGVLYY---QGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TC----HHHHHHHHHHHH---HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CC----HHHHHHHHHHHH---cCCCcCCCHHHHHHHHHHHHHCC
Confidence 444555555555555555555555555555542 22 344555555555 5 555555555555555442
Q ss_pred CCchhHHHHHHHHHHHHH----cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHH
Q 036703 160 PKGRAEDLYRKFLAFEKQ----YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER----VGNQERVREVYE 231 (365)
Q Consensus 160 p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~ 231 (365)
....+..++.++.. .++.+ +|+..|+++++. +++.++..+|.++.. .+++++|+..|+
T Consensus 73 ----~~~a~~~lg~~~~~g~~~~~~~~--------~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 73 ----YSNGCHLLGNLYYSGQGVSQNTN--------KALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp ----CHHHHHHHHHHHHHTSSSCCCHH--------HHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHhCCCCcccCHH--------HHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 13344444444444 44433 466666666655 367888889999988 999999999999
Q ss_pred HHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc----cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH----
Q 036703 232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVD----AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC---- 303 (365)
Q Consensus 232 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---- 303 (365)
++++..+.. .+..++.++ .. .+++++|+..|+++++.. .+..+..++.++..
T Consensus 139 ~a~~~~~~~-----------a~~~lg~~~-~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 139 KACDLNDGD-----------GCTILGSLY-DAGRGTPKDLKKALASYDKACDLK--------DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp HHHHTTCHH-----------HHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTCSS
T ss_pred HHHhcCcHH-----------HHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCC
Confidence 999976332 666777776 35 899999999999999873 35678889999999
Q ss_pred hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhHHHHHHHHHhcCcC
Q 036703 304 LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS----LDETERARAIFELAIAQPI 356 (365)
Q Consensus 304 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~ 356 (365)
.+++++|+..|+++++..| +.++..++.++.. .|++++|...|+++++..|
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999999876 8889999999999 9999999999999999887
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=1.4e-20 Score=149.35 Aligned_cols=203 Identities=10% Similarity=0.007 Sum_probs=175.9
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC-C-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-D-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA 94 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 94 (365)
|.++..|...|.++...|++++|+..|+++++.+| . ...|..+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55678999999999999999999999999999997 4 778888999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhhcCChhhHH-------HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHH
Q 036703 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAE-------QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL 167 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 167 (365)
.++...|++++|+..|+++++. .|.+ + .+|..+|.++. ..|++++|+..|+++++..|.+.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA-VPGN----ATIEKLYAIYYLKEGQKFQ---QAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH-CCCc----HHHHHHHHHHHHHHhHHHH---HhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 9999999999999999999999 9987 5 66999999999 999999999999999999987112567
Q ss_pred HHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703 168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
+..++.++... +...++++....+.+...+... .....+.+++|+..|+++++..|++..
T Consensus 156 ~~~l~~~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 156 LYSLGVLFYNN-------------GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHHHHH-------------HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 77777766543 4455677777777775554333 345667899999999999999999864
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=6.3e-22 Score=173.92 Aligned_cols=218 Identities=7% Similarity=-0.051 Sum_probs=195.7
Q ss_pred hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh-HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703 100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET-DRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 178 (365)
.+.+++++..+++.... .|.+ ..++..+|.++. ..|++ ++|+..|+++++..|.+ ...|..++..+...
T Consensus 81 ~~~~~~al~~l~~~~~~-~~~~----a~~~~~lg~~~~---~~g~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~ 150 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGS-AQVE----AQALMLKGKALN---VTPDYSPEAEVLLSKAVKLEPEL--VEAWNQLGEVYWKK 150 (474)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCC----HHHHHHHHHHHT---SSSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-Cchh----HHHHHHHHHHHH---hccccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHc
Confidence 34577888888888888 7777 999999999999 99999 99999999999999987 67899999999999
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCchhhhHHHHh
Q 036703 179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV---------GNQERVREVYERAIANVPPAEEKRYWQRY 249 (365)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 249 (365)
|+.+ +|+..|+++++.+|+ ..++..+|.++... |++++|+..|+++++.+|.+..
T Consensus 151 g~~~--------~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------- 214 (474)
T 4abn_A 151 GDVT--------SAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR------- 214 (474)
T ss_dssp TCHH--------HHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-------
T ss_pred CCHH--------HHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH-------
Confidence 9866 799999999999999 79999999999999 9999999999999999999854
Q ss_pred HHHHHHHHHHHhhcc--------CChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703 250 IYLWINYALYKEVDA--------GDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 250 ~~~~~~~~~~~~~~~--------~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 320 (365)
.|..++..+ ... |++++|+..|+++++..|.. ++ +..+..+|.++...|++++|...|+++++.
T Consensus 215 --~~~~lg~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 215 --SWYILGNAY-LSLYFNTGQNPKISQQALSAYAQAEKVDRKA----SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp --HHHHHHHHH-HHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHH-HHHHHhhccccchHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778888887 466 89999999999999998310 14 889999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHhhccchhHHHHHHHH
Q 036703 321 SPENCYAWSKYTELEKSLDETERARAIFEL 350 (365)
Q Consensus 321 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 350 (365)
+|++..+|..++.++...|+.++|...+.+
T Consensus 288 ~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 288 DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999876543
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=1.3e-20 Score=161.69 Aligned_cols=296 Identities=10% Similarity=0.049 Sum_probs=218.5
Q ss_pred ChhhHHHHHHHHHHhCC---CchHHH--HHHH--HHHHhcCChhHHH-----------HHHHHHHhhCCChHH------H
Q 036703 1 FIDHGRNAWDRVVTLSP---RVDQLW--NNYI--RMEENLGNVAGAR-----------QIFERWMHWMPDHEG------W 56 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p---~~~~~~--~~~~--~~~~~~g~~~~A~-----------~~~~~al~~~p~~~~------~ 56 (365)
++++|..+++.+....+ .+..+. +.+. +.....++++.+. ..+++.-...+.... +
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 106 (383)
T 3ulq_A 27 SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFN 106 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHH
Confidence 46788888888776532 233333 3322 2233344555555 666664432222233 3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh---CC---cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHH
Q 036703 57 LSYIKFKLRYNEVQRARHIFERLVQC---HP---YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQ 127 (365)
Q Consensus 57 ~~~~~~~~~~~~~~~A~~~~~~~l~~---~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~ 127 (365)
...|.++...|++++|...|++++.. .| ....++..+|.++...|++++|+..++++++. .+.. .+....
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI-YKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTCSTTHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhCccchHHHHH
Confidence 34788999999999999999999986 23 34688999999999999999999999999998 7654 233466
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH--
Q 036703 128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR-- 201 (365)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~-- 201 (365)
++..+|.++. ..|++++|+..|+++++..+... ....+..++.++...|+.+ +|+..|++++.
T Consensus 186 ~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~--------~A~~~~~~al~~~ 254 (383)
T 3ulq_A 186 CHSLFATNFL---DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE--------DAIPYFKRAIAVF 254 (383)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHH
Confidence 8899999999 99999999999999998654321 3457788889999999866 79999999999
Q ss_pred ---cC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC---hhHHHHHH
Q 036703 202 ---KN-PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD---LERTRDVY 274 (365)
Q Consensus 202 ---~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~ 274 (365)
.+ |....++..+|.++...|++++|...+++++...+....... ...+..++.++ ...|+ +++|+..+
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~l~~~~-~~~~~~~~~~~al~~~ 329 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY----LSEFEFLKSLY-LSGPDEEAIQGFFDFL 329 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH-TSSCCHHHHHHHHHHH
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHH-hCCCcHHHHHHHHHHH
Confidence 56 777889999999999999999999999999987543221111 11234466666 47777 67777777
Q ss_pred HHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703 275 RTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWS 321 (365)
Q Consensus 275 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 321 (365)
++.-.. |. ..++..+|.++...|++++|..+|+++++..
T Consensus 330 ~~~~~~--------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 330 ESKMLY--------ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHTTCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHCcCH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 766222 33 6677788888888888888888888888764
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=4.2e-20 Score=146.63 Aligned_cols=216 Identities=9% Similarity=0.038 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVA 131 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (365)
+..|...|..+...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..|+++++. .|.+ ..+|..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~ 81 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-NYNL----ANAYIG 81 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCSH----HHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-Ccch----HHHHHH
Confidence 45566666666666666666666666666665 55666666666666666666666666666666 5555 666666
Q ss_pred HHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 036703 132 FAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWF 211 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~ 211 (365)
+|.++. ..|++++|+..|+++++..|.+. .++..+ ..+|.
T Consensus 82 l~~~~~---~~~~~~~A~~~~~~al~~~p~~~--~~~~~~-----------------------------------~~~~~ 121 (228)
T 4i17_A 82 KSAAYR---DMKNNQEYIATLTEGIKAVPGNA--TIEKLY-----------------------------------AIYYL 121 (228)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHHHHHSTTCH--HHHHHH-----------------------------------HHHHH
T ss_pred HHHHHH---HcccHHHHHHHHHHHHHHCCCcH--HHHHHH-----------------------------------HHHHH
Confidence 666666 66666666666666666555541 111111 14678
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC--chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcch
Q 036703 212 DYIRLEERVGNQERVREVYERAIANVPP--AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME 289 (365)
Q Consensus 212 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 289 (365)
.+|.++...|++++|+..|+++++..|. +. ..+..++.++ . ..+...++++....+..
T Consensus 122 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------~~~~~l~~~~-~-----~~~~~~~~~a~~~~~~~----- 181 (228)
T 4i17_A 122 KEGQKFQQAGNIEKAEENYKHATDVTSKKWKT---------DALYSLGVLF-Y-----NNGADVLRKATPLASSN----- 181 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH---------HHHHHHHHHH-H-----HHHHHHHHHHGGGTTTC-----
T ss_pred HHhHHHHHhccHHHHHHHHHHHHhcCCCcccH---------HHHHHHHHHH-H-----HHHHHHHHHHHhcccCC-----
Confidence 8899999999999999999999999998 63 3777777775 2 33445567776664221
Q ss_pred hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703 290 ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 336 (365)
+..+ .+......+.+++|+..|+++++.+|++..+...++.+..
T Consensus 182 -~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 182 -KEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp -HHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred -HHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 2222 2333445678999999999999999999999888877654
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=2.7e-21 Score=176.36 Aligned_cols=173 Identities=16% Similarity=0.192 Sum_probs=160.3
Q ss_pred HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703 14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN 92 (365)
Q Consensus 14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 92 (365)
...|+++.++..+|.++..+|++++|+..|+++++++|+ ..+|..+|.++...|++++|+..|+++++.+|++..+|..
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 357999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL 172 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 172 (365)
+|.++...|++++|++.|+++++. .|++ ..+|..+|.++. .+|++++|+..|+++++..|++ ...+..++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l-~P~~----~~a~~~Lg~~~~---~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L~ 152 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI-NPAF----ADAHSNLASIHK---DSGNIPEAIASYRTALKLKPDF--PDAYCNLA 152 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSCC--HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC--hHHHhhhh
Confidence 999999999999999999999999 9988 999999999999 9999999999999999999987 67899999
Q ss_pred HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC
Q 036703 173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP 204 (365)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p 204 (365)
..+...|+.+ .|...|+++++..|
T Consensus 153 ~~l~~~g~~~--------~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 153 HCLQIVCDWT--------DYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHTTCCT--------THHHHHHHHHHHHH
T ss_pred hHHHhcccHH--------HHHHHHHHHHHhCh
Confidence 9999999987 46677777766543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=3.7e-20 Score=158.80 Aligned_cols=303 Identities=11% Similarity=0.022 Sum_probs=230.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhhC----CChH--HHHHHH--HHHHHhccHHHHH-----------HHHHHHHHhCCcchH
Q 036703 28 RMEENLGNVAGARQIFERWMHWM----PDHE--GWLSYI--KFKLRYNEVQRAR-----------HIFERLVQCHPYNLS 88 (365)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~al~~~----p~~~--~~~~~~--~~~~~~~~~~~A~-----------~~~~~~l~~~p~~~~ 88 (365)
-.....+++++|..+++.+.+.. ++.. .+..+. +.....++++.+. ..++++-. .|.+..
T Consensus 20 ~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~~~~ 98 (383)
T 3ulq_A 20 YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQARLT 98 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCCCch
Confidence 34557899999999999887543 2322 333333 2233445555555 66666433 443444
Q ss_pred HHH------HHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 89 AWI------NFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 89 ~~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
.+. ..|.++...|++++|+..|+++++. .... ......++..+|.++. ..|++++|+..++++++..+
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESK-LIFVKDRIEKAEFFFKMSESYY---YMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HhhCCCHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHH
Confidence 333 4899999999999999999999986 4331 2345789999999999 99999999999999998644
Q ss_pred Cch-----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhCCHHHHHHH
Q 036703 161 KGR-----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY------DTWFDYIRLEERVGNQERVREV 229 (365)
Q Consensus 161 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~ 229 (365)
... ....+..++..+...|+++ +|...|++++...|... .++..+|.++...|++++|+..
T Consensus 175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 175 EHEAYNIRLLQCHSLFATNFLDLKQYE--------DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 321 3457777888888999866 69999999998755432 4889999999999999999999
Q ss_pred HHHHHhc-----C-CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHH
Q 036703 230 YERAIAN-----V-PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMEL 302 (365)
Q Consensus 230 ~~~~~~~-----~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 302 (365)
|++++.. . |.. ..++..+|..+ ...|++++|+..+++++...+.... |. ...+..++.++.
T Consensus 247 ~~~al~~~~~~~~~~~~---------~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSL---------PQAYFLITQIH-YKLGKIDKAHEYHSKGMAYSQKAGD--VIYLSEFEFLKSLYL 314 (383)
T ss_dssp HHHHHHHHHHTTCGGGH---------HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccchhH---------HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHh
Confidence 9999984 3 332 44788888887 6999999999999999998543221 32 333567888888
Q ss_pred HhCC---CccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 303 CLGN---IDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 303 ~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
..|+ +++|..++++. ...|....++..++.++...|++++|...|+++++...
T Consensus 315 ~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8898 88888888887 44566777999999999999999999999999988664
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.3e-21 Score=159.05 Aligned_cols=256 Identities=14% Similarity=0.091 Sum_probs=192.6
Q ss_pred hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC----ChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD----DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
.+|....++..+|.++...|++++|+..|+++++. ... +.+....++..+|.++. ..|++++|+..|++++.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED-LEKTSGHDHPDVATMLNILALVYR---DQNKYKDAANLLNDALA 97 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHCSSSHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999985 321 12455889999999999 99999999999999998
Q ss_pred cC-----CC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCCH
Q 036703 158 RI-----PK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN--------PMNYDTWFDYIRLEERVGNQ 223 (365)
Q Consensus 158 ~~-----p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~ 223 (365)
.. +. ......+..++.++...|+.+ +|...|++++... |....++..+|.++...|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYK--------EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHH--------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 63 22 224678888888888899866 6888898888764 45567899999999999999
Q ss_pred HHHHHHHHHHHhcC-----CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc---------CCCcch
Q 036703 224 ERVREVYERAIANV-----PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS---------FSPRME 289 (365)
Q Consensus 224 ~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---------~~~~~~ 289 (365)
++|+..|++++... +.++. ...++..++.++ ...|++++|+..+++++...+. ....|.
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPN------VAKTKNNLASCY-LKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHH------HHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 99999999999871 11221 144778888887 5899999999999999986321 111111
Q ss_pred hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 290 ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
....+...+......+.+.+|...++++....|....++..++.++...|++++|...|+++++..|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 2334444555566788899999999999999999999999999999999999999999999998876
No 70
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=4e-19 Score=144.89 Aligned_cols=222 Identities=10% Similarity=0.031 Sum_probs=198.6
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--ChhHHHHHHHHHHhhCCC-hHHHHHHHHHH----HHh---ccHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG--NVAGARQIFERWMHWMPD-HEGWLSYIKFK----LRY---NEVQRA 72 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~-~~~~~~~~~~~----~~~---~~~~~A 72 (365)
++|..++++++.++|++..+|...+.+....| ++++++..+++++..+|. ..+|...+.+. ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 58999999999999999999999999999999 999999999999999999 78999988887 556 789999
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcchH--HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch------
Q 036703 73 RHIFERLVQCHPYNLSAWINFADFEMKMGEVD--RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE------ 144 (365)
Q Consensus 73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 144 (365)
+.++.++++.+|.+..+|...+-+....|.++ +++++++++++. .|.+ ..+|...+.+.. ..+.
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d~~N----~sAW~~R~~ll~---~l~~~~~~~~ 201 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-DLKN----NSAWSHRFFLLF---SKKHLATDNT 201 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---SSGGGCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---hccccchhhh
Confidence 99999999999999999999999999999988 999999999999 9998 999999999998 8887
Q ss_pred hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhC
Q 036703 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN---PMNYDTWFDYIRLEERVG 221 (365)
Q Consensus 145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~---p~~~~~~~~~~~~~~~~~ 221 (365)
++++++.++++|..+|.+ ...|.-...+....|.... .....+++++..+ |.++.++..++.++...|
T Consensus 202 ~~eEl~~~~~aI~~~p~n--~SaW~y~~~ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQN--PSTWNYLLGIHERFDRSIT-------QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp HHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCCGG-------GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHhcCCChH-------HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 999999999999999998 5677777777777776432 3445666666655 889999999999999999
Q ss_pred CHHHHHHHHHHHHh-cCCCch
Q 036703 222 NQERVREVYERAIA-NVPPAE 241 (365)
Q Consensus 222 ~~~~A~~~~~~~~~-~~p~~~ 241 (365)
+.++|+++|+++.. .+|-..
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~ 293 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRS 293 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGH
T ss_pred CHHHHHHHHHHHHhccChHHH
Confidence 99999999999997 588764
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=9.8e-21 Score=172.65 Aligned_cols=174 Identities=14% Similarity=0.179 Sum_probs=163.9
Q ss_pred hCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHH
Q 036703 49 WMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ 127 (365)
Q Consensus 49 ~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 127 (365)
..|+ ..++..+|.++..+|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..|+++++. .|++ ..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-~P~~----~~ 78 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTF----AD 78 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HH
Confidence 3576 6899999999999999999999999999999999999999999999999999999999999999 9988 99
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH
Q 036703 128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY 207 (365)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~ 207 (365)
+|..+|.++. .+|++++|++.|+++++..|.+ ...+..++..+...|+.+ +|+..|+++++.+|++.
T Consensus 79 a~~nLg~~l~---~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~--------eAi~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 79 AYSNMGNTLK---EMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIP--------EAIASYRTALKLKPDFP 145 (723)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCh
Confidence 9999999999 9999999999999999999987 688999999999999866 79999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 208 DTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
.++..++.++...|++++|.+.++++++..|+.
T Consensus 146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 146 DAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999999999999876553
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.86 E-value=8.6e-19 Score=149.75 Aligned_cols=312 Identities=12% Similarity=0.036 Sum_probs=234.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch------
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH------EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL------ 87 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------ 87 (365)
..++...+.++...|++++|+..+++++...|.. .++..++.++...|++++|...+++++...|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3556778889999999999999999999988762 2566778889999999999999999998766432
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC----hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 88 SAWINFADFEMKMGEVDRARNVYECAVEIFLADD----HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
.++..+|.++...|++++|+..+++++.. .+.. ++....++..++.++. ..|++++|...+++++...+...
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQL-INEQHLEQLPMHEFLVRIRAQLLW---AWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCTTSTHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhccccCcHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhccC
Confidence 33678899999999999999999999987 5321 1234667888999999 99999999999999998776421
Q ss_pred ---hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC--CCHHHHH-----HHHHHHHHhCCHHHHHHHHHHH
Q 036703 164 ---AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP--MNYDTWF-----DYIRLEERVGNQERVREVYERA 233 (365)
Q Consensus 164 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p--~~~~~~~-----~~~~~~~~~~~~~~A~~~~~~~ 233 (365)
....+..++.++...|+.+ +|...+++++...+ .....|. ..+.++...|++++|...++++
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~--------~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLD--------NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 2456777788888889866 68999999887532 2222232 2345577899999999999999
Q ss_pred HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHH
Q 036703 234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRK 312 (365)
Q Consensus 234 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~ 312 (365)
+...|...... ...+..++..+ ...|++++|...+++++...+..... +. ..++..++.++...|++++|..
T Consensus 242 ~~~~~~~~~~~-----~~~~~~la~~~-~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 242 AKPEFANNHFL-----QGQWRNIARAQ-ILLGEFEPAEIVLEELNENARSLRLM-SDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp CCCCCTTCGGG-----HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCCCCcchhh-----HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 98766432100 12455677776 58899999999999999875443221 22 4577888999999999999999
Q ss_pred HHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703 313 LYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL 357 (365)
Q Consensus 313 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 357 (365)
.+++++...+.. .+..+....| .....++++.+...|.
T Consensus 315 ~l~~al~~~~~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 315 VLLDALKLANRT-----GFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHH-----CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccc-----cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 999999876532 1223333444 5666677777776664
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.1e-20 Score=154.37 Aligned_cols=249 Identities=12% Similarity=0.074 Sum_probs=182.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhh-----c
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL-----A 119 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~ 119 (365)
..+|..++.++...|++++|...|+++++. .|....++..+|.++...|++++|+..|++++.. . +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI-REKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHhCC
Confidence 466777778888888888888888888774 5666788889999999999999999999999887 5 3
Q ss_pred CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC-----CC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHH
Q 036703 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI-----PK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMR 193 (365)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 193 (365)
++ +....++..++.++. ..|++++|+..|+++++.. +. ......+..++.++...|+.+ +|+
T Consensus 106 ~~-~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~A~ 173 (311)
T 3nf1_A 106 DH-PAVAATLNNLAVLYG---KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE--------EVE 173 (311)
T ss_dssp TC-HHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH--------HHH
T ss_pred CC-hHHHHHHHHHHHHHH---HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH--------HHH
Confidence 32 455889999999999 9999999999999999864 22 224667888888888889865 699
Q ss_pred HHHHHHHHc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch-------hhhHHHHhHHHHHHHHH
Q 036703 194 LQYEDGVRK--------NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE-------EKRYWQRYIYLWINYAL 258 (365)
Q Consensus 194 ~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~~ 258 (365)
..|++++.. .|....++..++.++...|++++|...|++++...|... ....|. ....+...+.
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 252 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-HAEEREECKG 252 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-HHHHHHHC--
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-HHHHHHHhcC
Confidence 999999887 666678899999999999999999999999997643311 000000 0112222222
Q ss_pred HHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc
Q 036703 259 YKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE 323 (365)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 323 (365)
.. ...+.+.++...++++.... |. ..++..+|.++...|++++|.++|++++++.|+
T Consensus 253 ~~-~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 253 KQ-KDGTSFGEYGGWYKACKVDS-------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CCSCCCC---------C-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ch-hhHHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 32 24566777888888888765 54 788999999999999999999999999998774
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.85 E-value=2.4e-19 Score=156.55 Aligned_cols=304 Identities=9% Similarity=-0.011 Sum_probs=200.6
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhhCCC------------------------
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG-----NVAGARQIFERWMHWMPD------------------------ 52 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~------------------------ 52 (365)
+++|+..|++++.. ++.++..+|.++...| ++++|...|+++++..+.
T Consensus 54 ~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 54 IKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHH
T ss_pred HHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 46777777777755 4566777777555554 566777777777763321
Q ss_pred ----------hHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---chHHHHHHHHHHHh
Q 036703 53 ----------HEGWLSYIKFKLRYN----EVQRARHIFERLVQCHPYNLSAWINFADFEMKMG---EVDRARNVYECAVE 115 (365)
Q Consensus 53 ----------~~~~~~~~~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~ 115 (365)
+.++..++.++...+ +.+.+..+++.+...+| .++..+|.++...| +.++|+..|+++.+
T Consensus 131 ~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 131 QISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp HHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 223333444444433 33444444555444444 48889999999999 99999999999999
Q ss_pred hhhcCChhhHHHHHHHHHHHHHhcccc----chhHHHHHHHHHHhccCCCchhHHHHHHHHHH-H--HHcCCchhhhHHH
Q 036703 116 IFLADDHDEAEQLFVAFAKFEEMGCNC----KETDRARCIYKFALDRIPKGRAEDLYRKFLAF-E--KQYGDREGIEDAI 188 (365)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 188 (365)
. .|.. ...+..++.++. .. +++++|+..|+++. |.+ ...+..++.+ + ...++
T Consensus 208 ~-g~~~----a~~~~~Lg~~y~---~g~~~~~d~~~A~~~~~~aa---~g~--~~a~~~Lg~~~~~~~~~~d-------- 266 (452)
T 3e4b_A 208 R-GTVT----AQRVDSVARVLG---DATLGTPDEKTAQALLEKIA---PGY--PASWVSLAQLLYDFPELGD-------- 266 (452)
T ss_dssp T-TCSC----HHHHHHHHHHHT---CGGGSSCCHHHHHHHHHHHG---GGS--THHHHHHHHHHHHSGGGCC--------
T ss_pred C-CCHH----HHHHHHHHHHHh---CCCCCCCCHHHHHHHHHHHc---CCC--HHHHHHHHHHHHhCCCCCC--------
Confidence 9 7777 777788999887 55 78999999999988 554 4566666665 3 23444
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703 189 AGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG-----NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD 263 (365)
Q Consensus 189 ~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
.++|+..|+++.+. .++.+++.+|.++. .| ++++|+..|+++. |.++ ..+..++.++...
T Consensus 267 ~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~---------~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 267 VEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV---------AADYYLGQIYRRG 331 (452)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH---------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH---------HHHHHHHHHHHCC
Confidence 34799999998864 58899999999987 55 9999999999998 5553 3667777776321
Q ss_pred ---cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703 264 ---AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK 336 (365)
Q Consensus 264 ---~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 336 (365)
..++++|+..|+++.+.. ++.....+|.++.. ..++.+|..+|+++.+..+.............+
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g--------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNG--------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPL 403 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT--------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 238999999999998862 24456778888764 458889999999998876544444444333344
Q ss_pred hccchhHHHHHHHHHhcCc
Q 036703 337 SLDETERARAIFELAIAQP 355 (365)
Q Consensus 337 ~~g~~~~A~~~~~~a~~~~ 355 (365)
..++..+|..+.++..+..
T Consensus 404 ~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 404 TPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 5567778888877665543
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=1.8e-19 Score=146.00 Aligned_cols=196 Identities=15% Similarity=0.072 Sum_probs=147.6
Q ss_pred hhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh
Q 036703 48 HWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD 123 (365)
Q Consensus 48 ~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 123 (365)
...|+ ...+...|..+...|++++|+..|++++..+|++ +.++..+|.++...|++++|+..|+++++. .|.+ +
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-~p~~-~ 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-YQID-P 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC-T
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-CCCC-c
Confidence 34555 6788888888888899999999999999888887 888999999999999999999999999999 8875 5
Q ss_pred hHHHHHHHHHHHHHhccc--------cchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHH
Q 036703 124 EAEQLFVAFAKFEEMGCN--------CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 195 (365)
..+.+++.+|.++. . .|++++|+..|+++++..|.+.. .+.....+.. .
T Consensus 87 ~~~~a~~~lg~~~~---~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~---------------~--- 143 (261)
T 3qky_A 87 RVPQAEYERAMCYY---KLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRE---------------L--- 143 (261)
T ss_dssp THHHHHHHHHHHHH---HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHH---------------H---
T ss_pred hhHHHHHHHHHHHH---HhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHH---------------H---
Confidence 56788999999998 8 99999999999999999998642 2221111110 0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc----------C
Q 036703 196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA----------G 265 (365)
Q Consensus 196 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 265 (365)
.+.....++.+|.++...|++++|+..|+++++..|+++.. ...+..++..+ ... |
T Consensus 144 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~a~~~l~~~~-~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 144 -------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWA------DDALVGAMRAY-IAYAEQSVRARQPE 209 (261)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH------HHHHHHHHHHH-HHHHHTSCGGGHHH
T ss_pred -------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchH------HHHHHHHHHHH-HHhcccchhhcccc
Confidence 01112448889999999999999999999999999986421 23555666655 233 5
Q ss_pred ChhHHHHHHHHHHhccc
Q 036703 266 DLERTRDVYRTLFIFYF 282 (365)
Q Consensus 266 ~~~~a~~~~~~a~~~~~ 282 (365)
++++|+..|+++++..|
T Consensus 210 ~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 210 RYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHCC
Confidence 55666666666666553
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.84 E-value=3.1e-19 Score=144.62 Aligned_cols=207 Identities=15% Similarity=0.071 Sum_probs=165.7
Q ss_pred HHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--
Q 036703 13 VTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-- 86 (365)
Q Consensus 13 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-- 86 (365)
....|.++..++.+|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4568899999999999999999999999999999999987 5789999999999999999999999999998854
Q ss_pred -hHHHHHHHHHHHh--------hcchHHHHHHHHHHHhhhhcCChhhHHHHH--------------HHHHHHHHhccccc
Q 036703 87 -LSAWINFADFEMK--------MGEVDRARNVYECAVEIFLADDHDEAEQLF--------------VAFAKFEEMGCNCK 143 (365)
Q Consensus 87 -~~~~~~~~~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 143 (365)
+.++..+|.++.. .|++++|+..|+++++. .|++ +....+. +.+|.++. ..|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~-~~~~~a~~~~~~~~~~~~~~~~~la~~~~---~~g 162 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-YPNH-ELVDDATQKIRELRAKLARKQYEAARLYE---RRE 162 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-CTTC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-CcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hcc
Confidence 6789999999999 99999999999999999 9986 2223333 78899999 999
Q ss_pred hhHHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHcCCchh--hhHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHH
Q 036703 144 ETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYGDREG--IEDAIAGKMRLQYEDGVRKNPMNYD---TWFDYIRLE 217 (365)
Q Consensus 144 ~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~l~~~p~~~~---~~~~~~~~~ 217 (365)
++++|+..|+++++..|.+. ....+..++..+...|+... ......++|+..|+++++.+|+++. +...++.+.
T Consensus 163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 99999999999999999854 35677777777765533210 0111245799999999999999854 344445555
Q ss_pred HHhCCHH
Q 036703 218 ERVGNQE 224 (365)
Q Consensus 218 ~~~~~~~ 224 (365)
...++++
T Consensus 243 ~~~~~~~ 249 (261)
T 3qky_A 243 QRLTELE 249 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 4444443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=2.2e-18 Score=147.49 Aligned_cols=297 Identities=10% Similarity=0.038 Sum_probs=216.6
Q ss_pred ChhhHHHHHHHHHHhCCC---chHHH--HHHHHH--HHhcCChhHHH---------HHHHHHHhhCCC------hHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPR---VDQLW--NNYIRM--EENLGNVAGAR---------QIFERWMHWMPD------HEGWLS 58 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~---~~~~~--~~~~~~--~~~~g~~~~A~---------~~~~~al~~~p~------~~~~~~ 58 (365)
++++|..+++++....+. +..+. +.+..+ ..-.+.+..+. ..+++.-..... ...+..
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~ 106 (378)
T 3q15_A 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFF 106 (378)
T ss_dssp CHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHH
Confidence 567899999887654322 33333 333222 22223333333 555554322111 124566
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHH
Q 036703 59 YIKFKLRYNEVQRARHIFERLVQCHP------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLF 129 (365)
Q Consensus 59 ~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~ 129 (365)
.|..+...|++++|...|++++...+ ....++..+|.++...|+++.|+..++++++. .+.. ......++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI-YQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTSTTCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHhCCCchhhHHHHH
Confidence 78888999999999999999998632 24678999999999999999999999999998 7653 12346788
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhccCCC---c-hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH----
Q 036703 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPK---G-RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR---- 201 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~---- 201 (365)
..+|.++. ..|++++|+..|+++++..+. . ....++..++.++...|+.+ +|+..|++++.
T Consensus 186 ~~lg~~y~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~--------~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 186 FVIAGNYD---DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ--------MAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHHHh
Confidence 89999999 999999999999999985432 1 23457778888888899866 79999999999
Q ss_pred -cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC---hhHHHHHHHHH
Q 036703 202 -KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD---LERTRDVYRTL 277 (365)
Q Consensus 202 -~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~a 277 (365)
.+|....++..+|.++...|++++|...+++++...+...... +...+..++..+ ...++ +.+|+..+++.
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~l~~ly-~~~~~~~~~~~al~~~~~~ 329 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF----YKELFLFLQAVY-KETVDERKIHDLLSYFEKK 329 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC----HHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHT
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHhC
Confidence 7888889999999999999999999999999999865422111 112334455555 36677 67777777763
Q ss_pred HhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc
Q 036703 278 FIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP 322 (365)
Q Consensus 278 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 322 (365)
-.. |. ..++..+|.++...|++++|...|+++++...
T Consensus 330 ~~~--------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 330 NLH--------AYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp TCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCh--------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 221 44 67788899999999999999999999987643
No 78
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=3.2e-18 Score=160.13 Aligned_cols=266 Identities=9% Similarity=0.051 Sum_probs=161.1
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
+++.+|..+|..+...|++++|+..|.++ .+...|...+.++.+.|++++|.+.|..+.+..+ ++.+-..+|..|
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~-e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-cccccHHHHHHH
Confidence 33445555555555555555555555443 2244444455555555555555555555554443 222222344444
Q ss_pred HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703 98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ 177 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 177 (365)
.+.+++++ .+.| ++ .+ + ...|...|..+. ..|++++|...|.++ ..|..++..+.+
T Consensus 1178 AKl~rlee-le~f---I~--~~-n----~ad~~~iGd~le---~eg~YeeA~~~Y~kA----------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEF---IN--GP-N----NAHIQQVGDRCY---DEKMYDAAKLLYNNV----------SNFGRLASTLVH 1233 (1630)
T ss_pred HhhcCHHH-HHHH---Hh--CC-C----HHHHHHHHHHHH---hcCCHHHHHHHHHhh----------hHHHHHHHHHHH
Confidence 44444442 2211 11 11 1 233445666666 666777777776664 245555555556
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703 178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA 257 (365)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 257 (365)
.|+.+ .|++.++++ ++..+|...+..+...|++..|..+... +..+|+. +-..+
T Consensus 1234 Lge~q--------~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~de------------Leeli 1287 (1630)
T 1xi4_A 1234 LGEYQ--------AAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE------------LEELI 1287 (1630)
T ss_pred hCCHH--------HHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHH------------HHHHH
Confidence 66533 566666665 4456677666666666777766665553 3334442 23456
Q ss_pred HHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHH--HhCCCccHHHHHHHHHhhCc-----chHHHHH
Q 036703 258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMEL--CLGNIDPCRKLYEKYLEWSP-----ENCYAWS 329 (365)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p-----~~~~~~~ 329 (365)
.+|+ ..|.+++|+.++++++..+ |. ..+|..++.++. +-++..++.+.|...+...| .+..+|.
T Consensus 1288 ~yYe-~~G~feEAI~LlE~aL~Le-------raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A 1288 NYYQ-DRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 1359 (1630)
T ss_pred HHHH-HcCCHHHHHHHHHHHhccC-------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHH
Confidence 6664 8899999999999999887 44 667777777776 45678888888888888777 6888999
Q ss_pred HHHHHHhhccchhHHHH
Q 036703 330 KYTELEKSLDETERARA 346 (365)
Q Consensus 330 ~~~~~~~~~g~~~~A~~ 346 (365)
.+..+|.+.|++++|..
T Consensus 1360 elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1360 ELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHhcccHHHHHH
Confidence 99999999999998883
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=1.8e-19 Score=148.36 Aligned_cols=264 Identities=12% Similarity=0.039 Sum_probs=187.3
Q ss_pred HHHHHHHHHHhhCCC-hHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703 38 GARQIFERWMHWMPD-HEGWLSYIKFKLR--YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV 114 (365)
Q Consensus 38 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 114 (365)
+|.+++.++-+.-+. ...| .+ +.. .+++++|...|.++ +.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Confidence 466777777766655 2333 22 111 22477788877776 445677888888888888888
Q ss_pred hhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHHHHHHHHHHHc-CCchhhhHH
Q 036703 115 EIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLYRKFLAFEKQY-GDREGIEDA 187 (365)
Q Consensus 115 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~-~~~~~~~~~ 187 (365)
+. .+.. ......++..+|.++. ..|++++|+..|++++...|... ....+..++.++... |+.+
T Consensus 65 ~~-~~~~~~~~~~a~~~~~lg~~~~---~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~----- 135 (292)
T 1qqe_A 65 DY-QKKAGNEDEAGNTYVEAYKCFK---SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA----- 135 (292)
T ss_dssp HH-HHHTTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred HH-HHHhCCHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH-----
Confidence 77 5421 1233667888888888 88888888888888888665421 245677788888885 8865
Q ss_pred HHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHh
Q 036703 188 IAGKMRLQYEDGVRKNPMN------YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKE 261 (365)
Q Consensus 188 ~~~~a~~~~~~~l~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 261 (365)
+|+..|+++++..|.+ ..++..+|.++...|++++|+..|++++...|.+..... .....+...+.++
T Consensus 136 ---~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~lg~~~- 209 (292)
T 1qqe_A 136 ---KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW--SLKDYFLKKGLCQ- 209 (292)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG--GHHHHHHHHHHHH-
T ss_pred ---HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH--HHHHHHHHHHHHH-
Confidence 7999999999987754 467899999999999999999999999999887643110 0122566777776
Q ss_pred hccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHH--HhCCCccHHHHHHHHHhhCcchHHHHHHHHHHH
Q 036703 262 VDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMEL--CLGNIDPCRKLYEKYLEWSPENCYAWSKYTELE 335 (365)
Q Consensus 262 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 335 (365)
...|++++|+..|++++...|..... .....+..++..+. ..+++++|+..|++++.++|.+..++...-...
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~~~~~-~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 58999999999999999998665332 11334455555554 457799999999999999998877776655444
No 80
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.1e-21 Score=163.08 Aligned_cols=279 Identities=10% Similarity=0.050 Sum_probs=142.8
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
+++|.+.+++. +.+.+|..+|..+...|++++|+..|.++ ++...|...+..+...|++++|+.+++.+++
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57788888877 22569999999999999999999999875 5666888889899999999999999999998
Q ss_pred hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
..+ ++.+...++.+|.+.|+++++.++++ .|+ ...|..+|..+. ..|.+++|+..|.++
T Consensus 90 ~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn-----~~a~~~IGd~~~---~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 90 KAR-ESYVETELIFALAKTNRLAELEEFIN------GPN-----NAHIQQVGDRCY---DEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp --------------------CHHHHTTTTT------CC------------------------CTTTHHHHHHHT------
T ss_pred hCc-cchhHHHHHHHHHHhCCHHHHHHHHc------CCc-----HHHHHHHHHHHH---HcCCHHHHHHHHHHh------
Confidence 755 58888999999999999999887774 233 459999999999 999999999999976
Q ss_pred chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703 162 GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 241 (365)
..|..++..+.+.|+++ .|.+.|+++ +++.+|...+..+...|+++.|..+... +...|++
T Consensus 149 ----~n~~~LA~~L~~Lg~yq--------~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~- 209 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQ--------AAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE- 209 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHH--------HHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH-
T ss_pred ----hhHHHHHHHHHHhccHH--------HHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh-
Confidence 25888888888999866 699999998 5789999999999999999999777665 3355543
Q ss_pred hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHH--HhCCCccHHHHHHHHH
Q 036703 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMEL--CLGNIDPCRKLYEKYL 318 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~A~~~~~~al 318 (365)
....+.+| ...|.+++|+.++++++... +. ..+|..++.++. +.++..+..+.|...+
T Consensus 210 -----------l~~lv~~Y-ek~G~~eEai~lLe~aL~le-------~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 210 -----------LEELINYY-QDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHLELFWSRV 270 (449)
T ss_dssp -----------HHHHHHHH-HHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS
T ss_pred -----------HHHHHHHH-HHCCCHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 12355666 48999999999999999986 33 678888888886 4677888888888888
Q ss_pred hhCc-----chHHHHHHHHHHHhhccchhHHHHHH
Q 036703 319 EWSP-----ENCYAWSKYTELEKSLDETERARAIF 348 (365)
Q Consensus 319 ~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~ 348 (365)
.+.| .+..+|..+..++...|+++.|...+
T Consensus 271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 8888 88999999999999999999998754
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.83 E-value=1.8e-19 Score=147.60 Aligned_cols=229 Identities=16% Similarity=0.132 Sum_probs=175.8
Q ss_pred hhhHHHHHHHHHHh--------CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhC--------CC-hHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTL--------SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWM--------PD-HEGWLSYIKFKL 64 (365)
Q Consensus 2 ~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~~~~~~~ 64 (365)
+++|+..|+++++. .|....++..+|.++...|++++|+..|+++++.. |. ..++..++.++.
T Consensus 17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 96 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 56777888887773 36678889999999999999999999999999873 33 578999999999
Q ss_pred HhccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhh----cCChhhHHHHHHHH
Q 036703 65 RYNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL----ADDHDEAEQLFVAF 132 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~~~~~~ 132 (365)
..|++++|...|++++.. +|....++..+|.++...|++++|+..|+++++. . +.+++....++..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI-YATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHHSCTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHH
Confidence 999999999999999987 4777889999999999999999999999999986 3 11125567899999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCC-------chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPK-------GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM 205 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~ 205 (365)
|.++. ..|++++|+..|+++++..+. .....+|..........+...... ....+...++......|.
T Consensus 176 a~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 176 ASCYL---KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA--PYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHH---HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCCCHH
T ss_pred HHHHH---HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH--HHHHHHHHHHhcCCCCHH
Confidence 99999 999999999999999975321 112345555555554443332111 112333444443334566
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703 206 NYDTWFDYIRLEERVGNQERVREVYERAIAN 236 (365)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 236 (365)
...++..+|.++...|++++|...|+++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999999999875
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=3.6e-19 Score=138.86 Aligned_cols=153 Identities=11% Similarity=0.088 Sum_probs=135.5
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHH----------------HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNN----------------YIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFK 63 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~----------------~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 63 (365)
++++|+..|+++++.+|+++.+|.. +|.++...|++++|+..|+++++.+|+ ..+|..+|.++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 98 (208)
T 3urz_A 19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ 98 (208)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999 999999999999999999999999999 89999999999
Q ss_pred HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc
Q 036703 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE--VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN 141 (365)
Q Consensus 64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (365)
...|++++|+..|+++++.+|+++.+|..+|.++...|+ ...+...+.+++.. .|. ...+...|..+. .
T Consensus 99 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~a~~~~g~~~~---~ 169 (208)
T 3urz_A 99 VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-TKM-----QYARYRDGLSKL---F 169 (208)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-CHH-----HHHHHHHHHHHH---H
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-Cch-----hHHHHHHHHHHH---H
Confidence 999999999999999999999999999999999877654 45667777777544 322 446777888888 8
Q ss_pred cchhHHHHHHHHHHhccCCCc
Q 036703 142 CKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 142 ~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.|++++|+..|+++++..|+.
T Consensus 170 ~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 170 TTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHTHHHHHHHHHHHTTTSCCH
T ss_pred ccCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999975
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=4.1e-18 Score=145.77 Aligned_cols=311 Identities=12% Similarity=0.025 Sum_probs=226.7
Q ss_pred hHHHHHHHHHH--HhcCChhHHHHHHHHHHhhCCC----hH--HHHHHHHH--HHHhccHHHHH---------HHHHHHH
Q 036703 20 DQLWNNYIRME--ENLGNVAGARQIFERWMHWMPD----HE--GWLSYIKF--KLRYNEVQRAR---------HIFERLV 80 (365)
Q Consensus 20 ~~~~~~~~~~~--~~~g~~~~A~~~~~~al~~~p~----~~--~~~~~~~~--~~~~~~~~~A~---------~~~~~~l 80 (365)
..+-..+-..+ ...+++++|..+++++....+. .. .+..+..+ ....+++..+. ..++++-
T Consensus 10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 89 (378)
T 3q15_A 10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE 89 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHh
Confidence 34444455555 6789999999999987654332 22 23333322 12222222222 5555532
Q ss_pred HhCC-c----chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703 81 QCHP-Y----NLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153 (365)
Q Consensus 81 ~~~p-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 153 (365)
.... . ....++..|..+...|++++|+..|+++++. .+. +.+....++..+|.++. ..|++++|+..++
T Consensus 90 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~y~---~~~~~~~A~~~~~ 165 (378)
T 3q15_A 90 TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSDDIEKAEFHFKVAEAYY---HMKQTHVSMYHIL 165 (378)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HhhCCChHHHHHHHHHHHHHHH---HcCCcHHHHHHHH
Confidence 2111 1 1225667789999999999999999999987 543 12455788999999999 9999999999999
Q ss_pred HHhccCCCc-----hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCC
Q 036703 154 FALDRIPKG-----RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM------NYDTWFDYIRLEERVGN 222 (365)
Q Consensus 154 ~~l~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~ 222 (365)
+++...+.. .....+..++..+...|+++ +|...|++++...+. ...++..+|.++...|+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD--------KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 999864432 23567778888898999866 699999999885331 23578899999999999
Q ss_pred HHHHHHHHHHHHh-----cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHH
Q 036703 223 QERVREVYERAIA-----NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKK 296 (365)
Q Consensus 223 ~~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~ 296 (365)
+++|+..|++++. ..|.. ...+..+|..+ ...|++++|+..+++++...+.... |. ...+..
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~ 305 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLL---------PKVLFGLSWTL-CKAGQTQKAFQFIEEGLDHITARSH--KFYKELFLF 305 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCTTCC--SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCChhH---------HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999 55544 34777888887 6999999999999999998544322 22 344566
Q ss_pred HHHHHHHhCC---CccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 297 YIEMELCLGN---IDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 297 ~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
++.++...|+ +.+|...+++. ...|....++..+|.++...|++++|...|+++++..
T Consensus 306 l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 306 LQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7777777777 77888888773 3345567788999999999999999999999998654
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=6.9e-20 Score=134.93 Aligned_cols=136 Identities=8% Similarity=0.009 Sum_probs=127.9
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|++++..+|+++..++.+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++
T Consensus 12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHH-HHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNV-YECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
++.+|+++.++..+|.++...|++++|... ++++++. .|.+ +.++...+.++. ..|+
T Consensus 92 l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-~P~~----~~~~~l~~~ll~---~~G~ 149 (150)
T 4ga2_A 92 VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-FPGS----PAVYKLKEQLLD---CEGE 149 (150)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---TCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-CcCC----HHHHHHHHHHHH---HhCc
Confidence 999999999999999999999999877665 5999999 9998 999999999888 7764
No 85
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=1.4e-17 Score=135.78 Aligned_cols=244 Identities=11% Similarity=0.062 Sum_probs=201.4
Q ss_pred HHHhccH-HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc--chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH---
Q 036703 63 KLRYNEV-QRARHIFERLVQCHPYNLSAWINFADFEMKMG--EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE--- 136 (365)
Q Consensus 63 ~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--- 136 (365)
....|++ ++|+..+.+++.++|++..+|...+.++...| .+++++++++.++.. +|.+ ..+|...+.+.
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-nPk~----y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-NEKN----YQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-CTTC----CHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-Cccc----HHHHHHHHHHHHHH
Confidence 3344444 68999999999999999999999999999988 999999999999999 9988 99999988888
Q ss_pred -Hhcccc---chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 036703 137 -EMGCNC---KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD 212 (365)
Q Consensus 137 -~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~ 212 (365)
. .. +++++++..++++++.+|.+ ...|..-..+....|..+ ...++..++++++.+|.|..+|..
T Consensus 117 ~~---~l~~~~~~~~EL~~~~~~l~~~pkn--y~aW~~R~~vl~~l~~~~------~~~EL~~~~~~i~~d~~N~sAW~~ 185 (306)
T 3dra_A 117 ME---LNNNDFDPYREFDILEAMLSSDPKN--HHVWSYRKWLVDTFDLHN------DAKELSFVDKVIDTDLKNNSAWSH 185 (306)
T ss_dssp HH---HTTTCCCTHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HH---hccccCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcccC------hHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5 55 78999999999999999998 567777777777777654 115888999999999999999999
Q ss_pred HHHHHHHhCC------HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC-hhHHHHHHHHHHhccccCC
Q 036703 213 YIRLEERVGN------QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-LERTRDVYRTLFIFYFSFS 285 (365)
Q Consensus 213 ~~~~~~~~~~------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~~~~~~~~ 285 (365)
.+.+....|. ++++.+.+.+++..+|.+.. +|.....++. ..|+ .+....++.+++......
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S---------aW~y~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~- 254 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS---------TWNYLLGIHE-RFDRSITQLEEFSLQFVDLEKDQ- 254 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH---------HHHHHHHHHH-HTTCCGGGGHHHHHTTEEGGGTE-
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc---------HHHHHHHHHH-hcCCChHHHHHHHHHHHhccCCC-
Confidence 9999888877 89999999999999999964 7877777763 5555 445666777777653110
Q ss_pred CcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHh-hCcchHHHHHHHHHHH
Q 036703 286 PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLE-WSPENCYAWSKYTELE 335 (365)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~ 335 (365)
+ ..+..+..++.++.+.|+.++|.++|+++.+ .+|-....|...+..+
T Consensus 255 -~-~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 255 -V-TSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp -E-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred -C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 0 2366788889999999999999999999997 7999999998876543
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.1e-19 Score=166.65 Aligned_cols=186 Identities=12% Similarity=-0.016 Sum_probs=169.1
Q ss_pred hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHH--------hhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703 15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWM--------HWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY 85 (365)
Q Consensus 15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al--------~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 85 (365)
.+|+++.++...+ ...|++++|+..|++++ +.+|+ ..+|..++.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4788888877766 78899999999999999 88898 789999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH
Q 036703 86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE 165 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 165 (365)
+..+|..+|.++...|++++|+..|+++++. .|++ ..+|..+|.++. ..|++++ +..|+++++..|.+ .
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~----~~~~~~lg~~~~---~~g~~~~-~~~~~~al~~~P~~--~ 534 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDT-FPGE----LAPKLALAATAE---LAGNTDE-HKFYQTVWSTNDGV--I 534 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTC----SHHHHHHHHHHH---HHTCCCT-TCHHHHHHHHCTTC--H
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----hHHHHHHHHHHH---HcCChHH-HHHHHHHHHhCCch--H
Confidence 9999999999999999999999999999999 9988 999999999999 9999999 99999999999987 6
Q ss_pred HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 036703 166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN 222 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 222 (365)
..|..++..+...|+.+ +|+..|+++++.+|++..++..++.++...++
T Consensus 535 ~a~~~lg~~~~~~g~~~--------~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRV--------GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHHTTCHH--------HHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCHH--------HHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 78899999999999866 69999999999999999999999999866555
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=1.4e-18 Score=143.09 Aligned_cols=246 Identities=9% Similarity=0.036 Sum_probs=189.5
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhc-C-ChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENL-G-NVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
.+|.+++.++-+..+.+...| .+ +... + ++++|...|+++ +.++...|++++|...|.+++
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH
Confidence 468899999999888754444 22 2221 2 489999999988 556788999999999999999
Q ss_pred HhCCc------chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhcccc-chhHHHHHH
Q 036703 81 QCHPY------NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNC-KETDRARCI 151 (365)
Q Consensus 81 ~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~ 151 (365)
...+. ...++..+|.++...|++++|+..|+++++. .|.. ......++..+|.++. .. |++++|+..
T Consensus 65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~~~~g~~~~~a~~~~~lg~~~~---~~lg~~~~A~~~ 140 (292)
T 1qqe_A 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI-FTHRGQFRRGANFKFELGEILE---NDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH---HTTCCHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH---HhhcCHHHHHHH
Confidence 97532 2678999999999999999999999999998 7643 1223568899999999 96 999999999
Q ss_pred HHHHhccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHh
Q 036703 152 YKFALDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD-------TWFDYIRLEERV 220 (365)
Q Consensus 152 ~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-------~~~~~~~~~~~~ 220 (365)
|+++++..|... ....+..++.++...|+++ +|+..|++++...|++.. .+..+|.++...
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 212 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI--------EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA 212 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc
Confidence 999999876532 2457888899999999866 799999999999988653 578899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHh-hccCChhHHHHHHHHHHhcc
Q 036703 221 GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKE-VDAGDLERTRDVYRTLFIFY 281 (365)
Q Consensus 221 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~a~~~~ 281 (365)
|++++|+..|++++..+|....... ...+..++..++ ...+++++|+..|++++..+
T Consensus 213 g~~~~A~~~~~~al~l~p~~~~~~~----~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 213 TDAVAAARTLQEGQSEDPNFADSRE----SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp TCHHHHHHHHHGGGCC-------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 9999999999999999987643211 112333333332 25678999999999998887
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=2.1e-17 Score=141.17 Aligned_cols=286 Identities=12% Similarity=0.013 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH-----HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh--hhHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS-----AWINFADFEMKMGEVDRARNVYECAVEIFLADDH--DEAE 126 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~ 126 (365)
.++...+.++...|++++|...+++++...|.+.. ++..++.++...|++++|+..+++++.. .|... ....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM-ARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHhcCcHHHHH
Confidence 34566778888999999999999999998875432 5678889999999999999999999997 65431 1223
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC------chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH
Q 036703 127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK------GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV 200 (365)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 200 (365)
..+..++.++. ..|++++|+..+++++...+. ......+..++.++...|+.+ .|...+++++
T Consensus 94 ~~~~~la~~~~---~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al 162 (373)
T 1hz4_A 94 WSLIQQSEILF---AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD--------EAEASARSGI 162 (373)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHH
Confidence 45678899999 999999999999999986421 112456666788888889866 6999999999
Q ss_pred HcCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH
Q 036703 201 RKNPMN-----YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR 275 (365)
Q Consensus 201 ~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 275 (365)
...|.. ..++..++.++...|++++|...+++++...+.......|. .......+..+ ...|++++|...++
T Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~g~~~~A~~~~~ 239 (373)
T 1hz4_A 163 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI--SNANKVRVIYW-QMTGDKAAAANWLR 239 (373)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH--HHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH--HHHHHHHHHHH-HHCCCHHHHHHHHH
Confidence 987753 35688899999999999999999999987633211100000 01111233333 47899999999999
Q ss_pred HHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc------hHHHHHHHHHHHhhccchhHHHHHHH
Q 036703 276 TLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE------NCYAWSKYTELEKSLDETERARAIFE 349 (365)
Q Consensus 276 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~~ 349 (365)
+++...+.... .....+..++.++...|++++|...+++++...+. ...++..++.++...|+.++|...++
T Consensus 240 ~a~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 240 HTAKPEFANNH--FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp HSCCCCCTTCG--GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCCCCCCcch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99876533211 11345678899999999999999999999887442 23578888999999999999999999
Q ss_pred HHhcCcC
Q 036703 350 LAIAQPI 356 (365)
Q Consensus 350 ~a~~~~~ 356 (365)
+++...+
T Consensus 318 ~al~~~~ 324 (373)
T 1hz4_A 318 DALKLAN 324 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9987653
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=4e-20 Score=136.17 Aligned_cols=146 Identities=13% Similarity=0.054 Sum_probs=129.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcch
Q 036703 25 NYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV 103 (365)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 103 (365)
.+|.++...|++++|+..+++++..+|+ +..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3678888899999999999999998888 778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHH-HHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703 104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI-YKFALDRIPKGRAEDLYRKFLAFEKQYGD 180 (365)
Q Consensus 104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 180 (365)
++|+..|+++++. .|++ +.+|..+|.++. ..|++++|... ++++++..|.+ ..++.....+....|+
T Consensus 82 ~~A~~~~~~al~~-~p~~----~~~~~~la~~~~---~~~~~~~aa~~~~~~al~l~P~~--~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVEL-NPTQ----KDLVLKIAELLC---KNDVTDGRAKYWVERAAKLFPGS--PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHCSSSSHHHHHHHHHHHHSTTC--HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcCChHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHhCc
Confidence 9999999999999 9998 999999999999 99999877665 69999999987 5677777777766664
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=3e-19 Score=163.67 Aligned_cols=169 Identities=11% Similarity=-0.059 Sum_probs=155.4
Q ss_pred ChhhHHHHHHHHH--------HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHH
Q 036703 1 FIDHGRNAWDRVV--------TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQR 71 (365)
Q Consensus 1 ~~~~A~~~~~~~l--------~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~ 71 (365)
++++|+..|++++ +.+|++..+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++
T Consensus 406 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 485 (681)
T 2pzi_A 406 QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDS 485 (681)
T ss_dssp CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHH
Confidence 4689999999999 899999999999999999999999999999999999999 7899999999999999999
Q ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHH
Q 036703 72 ARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI 151 (365)
Q Consensus 72 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 151 (365)
|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++. .|.+ ..+|..+|.++. ..|++++|+..
T Consensus 486 A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-~P~~----~~a~~~lg~~~~---~~g~~~~A~~~ 556 (681)
T 2pzi_A 486 ATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST-NDGV----ISAAFGLARARS---AEGDRVGAVRT 556 (681)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-CCch----HHHHHHHHHHHH---HcCCHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999 9988 999999999999 99999999999
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703 152 YKFALDRIPKGRAEDLYRKFLAFEKQYGD 180 (365)
Q Consensus 152 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 180 (365)
|+++++..|.+ ...+...+..+...+.
T Consensus 557 ~~~al~l~P~~--~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHF--TTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTH--HHHHHHHHHHTC----
T ss_pred HHhhcccCccc--HHHHHHHHHHHHccCC
Confidence 99999999986 5677777666544443
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=1.6e-18 Score=132.49 Aligned_cols=170 Identities=13% Similarity=0.017 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
...+..+|.++...|++++|+..|+++++..|. ...|..++.++...|++++|...++++++..|+++.++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344555555555555555555555555555555 4555555555555555555555555555555555555555555555
Q ss_pred hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703 99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178 (365)
Q Consensus 99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 178 (365)
..|++++|...++++++. .|.+ ..++..+|.++. ..|++++|+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~a~~~~---~~~~~~~A~~---------------------------- 131 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPIN----FNVRFRLGVALD---NLGRFDEAID---------------------------- 131 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHH----------------------------
T ss_pred HhcCHHHHHHHHHHHHhc-CcHh----HHHHHHHHHHHH---HcCcHHHHHH----------------------------
Confidence 555555555555555555 5544 555555555555 5555555444
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703 179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 241 (365)
.+++++...|.+..++..++.++...|++++|...++++++..|.+.
T Consensus 132 ----------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 132 ----------------SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp ----------------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred ----------------HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 44555555566666777777777777788888888887777766653
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=1.8e-18 Score=132.24 Aligned_cols=154 Identities=13% Similarity=0.060 Sum_probs=147.6
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|+ ...|..++.++...|++++|...++++
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 102 (186)
T 3as5_A 23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102 (186)
T ss_dssp CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
+..+|+++.++..+|.++...|++++|+..++++++. .|.+ +.++..++.++. ..|++++|...++++++..
T Consensus 103 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 103 AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNE----GKVHRAIAFSYE---QMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred HhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-Cccc----hHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999 8888 999999999999 9999999999999999877
Q ss_pred CCc
Q 036703 160 PKG 162 (365)
Q Consensus 160 p~~ 162 (365)
|.+
T Consensus 175 ~~~ 177 (186)
T 3as5_A 175 EGA 177 (186)
T ss_dssp HCC
T ss_pred CCc
Confidence 765
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.81 E-value=2.5e-18 Score=134.11 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=110.2
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHH----------------HHHHHHHhccHHHHHHHHHHHHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLS----------------YIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
+.+.++..|..+...|++++|+..|+++++.+|+ ..+|.. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4667888899999999999999999999999998 678888 89999999999999999999999
Q ss_pred hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch--hHHHHHHHHHHhc
Q 036703 82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE--TDRARCIYKFALD 157 (365)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~ 157 (365)
.+|+++.++..+|.++...|++++|+..|+++++. .|++ +.+|..+|.++. ..|+ ...+...|++++.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~----~~a~~~lg~~~~---~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-EADN----LAANIFLGNYYY---LTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHHHHHHHHHHHHHC---C
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHH---HHhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999 8888 889999998886 5553 3455666666554
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.79 E-value=3.9e-16 Score=127.89 Aligned_cols=230 Identities=10% Similarity=0.043 Sum_probs=191.0
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc--cH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN----------VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN--EV 69 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~--~~ 69 (365)
++|...+++++..+|++..+|...+.+....|. +++++.+++.++..+|. ..+|...+.+....| ++
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 479999999999999999999999999988775 68899999999999999 799999999998888 48
Q ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc-hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc------
Q 036703 70 QRARHIFERLVQCHPYNLSAWINFADFEMKMGE-VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC------ 142 (365)
Q Consensus 70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 142 (365)
+++..++.++++.+|.+..+|...+.+....|. ++++++.++++++. .|.+ ..+|...+.+.. ..
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p~N----~SAW~~R~~ll~---~l~~~~~~ 198 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSN----YSSWHYRSCLLP---QLHPQPDS 198 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSCC----HHHHHHHHHHHH---HHSCCC--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CCCC----HHHHHHHHHHHH---Hhhhcccc
Confidence 999999999999999999999999999999998 59999999999999 9999 999999988877 55
Q ss_pred --------chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH-HcCCch--hhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 036703 143 --------KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK-QYGDRE--GIEDAIAGKMRLQYEDGVRKNPMNYDTWF 211 (365)
Q Consensus 143 --------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~a~~~~~~~l~~~p~~~~~~~ 211 (365)
+.++++++.+.+++...|.+. ..|.-..-+.. ..|... ......++.++..++++++..|++...+.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~--SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 678999999999999999984 45543322222 222111 11123467899999999999999966655
Q ss_pred HHHHHHH---HhCCHHHHHHHHHHHHhcCCCchh
Q 036703 212 DYIRLEE---RVGNQERVREVYERAIANVPPAEE 242 (365)
Q Consensus 212 ~~~~~~~---~~~~~~~A~~~~~~~~~~~p~~~~ 242 (365)
.++.+.. ..|..+++...+.+.++.+|...+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 5554432 357788999999999999998753
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.79 E-value=2e-17 Score=130.77 Aligned_cols=157 Identities=11% Similarity=0.033 Sum_probs=136.4
Q ss_pred ChhhHHHHHHHHHHhCCCch---HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHH--------
Q 036703 1 FIDHGRNAWDRVVTLSPRVD---QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLR-------- 65 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~-------- 65 (365)
++++|+..|++++..+|+++ .++..+|.++...|++++|+..|+++++.+|+ . .++..++.++..
T Consensus 19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~ 98 (225)
T 2yhc_A 19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQG 98 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhh
Confidence 57899999999999988864 68999999999999999999999999999998 2 367777777664
Q ss_pred ----------hccHHHHHHHHHHHHHhCCcchHHH-----------------HHHHHHHHhhcchHHHHHHHHHHHhhhh
Q 036703 66 ----------YNEVQRARHIFERLVQCHPYNLSAW-----------------INFADFEMKMGEVDRARNVYECAVEIFL 118 (365)
Q Consensus 66 ----------~~~~~~A~~~~~~~l~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 118 (365)
.|++++|+..|+++++.+|+++.++ ..+|.++...|++++|+..|+++++. .
T Consensus 99 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~ 177 (225)
T 2yhc_A 99 FFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-Y 177 (225)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-S
T ss_pred hhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-C
Confidence 5789999999999999999887665 56788899999999999999999999 9
Q ss_pred cCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 119 ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
|++ +..+.++..++.++. ..|++++|+..++++....|.+
T Consensus 178 p~~-~~~~~a~~~l~~~~~---~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 178 PDT-QATRDALPLMENAYR---QMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp TTS-HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHCCSCC
T ss_pred cCC-CccHHHHHHHHHHHH---HcCCcHHHHHHHHHHHhhCCCc
Confidence 886 445678999999999 9999999999999988887764
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.79 E-value=6.2e-17 Score=127.87 Aligned_cols=191 Identities=12% Similarity=0.049 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH---HHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS---AWI 91 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~ 91 (365)
++..++.+|..+...|++++|+..|+++++..|+ ..++..+|.++...|++++|+..|+++++.+|+++. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3677899999999999999999999999999887 368999999999999999999999999999998765 678
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH------
Q 036703 92 NFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE------ 165 (365)
Q Consensus 92 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------ 165 (365)
.+|.++...|.. . ...+..++..+. ..|++++|+..|+++++..|.+...
T Consensus 83 ~~g~~~~~~~~~------------~---------~~~~~~~~~~~~---~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~ 138 (225)
T 2yhc_A 83 MRGLTNMALDDS------------A---------LQGFFGVDRSDR---DPQQARAAFSDFSKLVRGYPNSQYTTDATKR 138 (225)
T ss_dssp HHHHHHHHHHC--------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred HHHHHHHhhhhh------------h---------hhhhhccchhhc---CcHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 888887764310 0 111222233333 4555555555555555555544211
Q ss_pred ---------HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703 166 ---------DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY---DTWFDYIRLEERVGNQERVREVYERA 233 (365)
Q Consensus 166 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~ 233 (365)
......+.++...|+.. .|+..|+++++.+|+++ .++..++.++...|++++|+..++++
T Consensus 139 l~~~~~~~~~~~~~~a~~~~~~~~~~--------~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 139 LVFLKDRLAKYEYSVAEYYTERGAWV--------AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHH--------HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11234455666777755 79999999999999986 67999999999999999999999999
Q ss_pred HhcCCCch
Q 036703 234 IANVPPAE 241 (365)
Q Consensus 234 ~~~~p~~~ 241 (365)
....|.+.
T Consensus 211 ~~~~~~~~ 218 (225)
T 2yhc_A 211 AANSSNTL 218 (225)
T ss_dssp HHCCSCCC
T ss_pred HhhCCCch
Confidence 99888864
No 97
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=3e-16 Score=147.03 Aligned_cols=123 Identities=10% Similarity=0.087 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc
Q 036703 209 TWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM 288 (365)
Q Consensus 209 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 288 (365)
.|..++.++...|+++.|++.++++.. ...|...+..+ ...|++..|+..... +..
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~ac-ve~~Ef~LA~~cgl~-Iiv-------- 1278 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFAC-VDGKEFRLAQMCGLH-IVV-------- 1278 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHH-hhhhHHHHHHHHHHh-hhc--------
Confidence 455555555555555555555555411 11444444333 344555555544432 221
Q ss_pred hhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhc--cchhHHHHHHHHHhcCcC
Q 036703 289 EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSL--DETERARAIFELAIAQPI 356 (365)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~a~~~~~ 356 (365)
.++.+..++..|...|.+++|+.++++++.++|.+..+|..++.++.+. ++..++.+.|...++..|
T Consensus 1279 -~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1279 -HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 2445557788889999999999999999999999999998888877754 567788888887776544
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=4.5e-18 Score=121.02 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=112.6
Q ss_pred HHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703 11 RVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA 89 (365)
Q Consensus 11 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 89 (365)
++..++|+....+...|..+.+.|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 455689999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703 90 WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
|..+|.++...|++++|++.|+++++. .|++ ..++..++.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l-~P~~----~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQV-DPSN----EEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-CcCC----HHHHHHHHHh
Confidence 999999999999999999999999999 9998 8888877765
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=2.1e-17 Score=135.23 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=130.8
Q ss_pred hccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhh-----cCChhhHHHHHHHH
Q 036703 66 YNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL-----ADDHDEAEQLFVAF 132 (365)
Q Consensus 66 ~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~ 132 (365)
.|++++|+..|+++++. +|....++..+|.++...|++++|+..|+++++. . +++ +....++..+
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~-~~~~~~~~~l 91 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI-REKTLGKDH-PAVAATLNNL 91 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCTTC-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHHcCCcc-hHHHHHHHHH
Confidence 45555666666666552 3566888999999999999999999999999987 5 332 5568899999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccC-----CC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc----
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRI-----PK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK---- 202 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~---- 202 (365)
|.++. ..|++++|+..|++++... +. ......+..++.++...|+.+ +|...|++++..
T Consensus 92 ~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 92 AVLYG---KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE--------EVEYYYRRALEIYATR 160 (283)
T ss_dssp HHHHH---TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHH---HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHh
Confidence 99999 9999999999999999873 22 224678888899998999866 699999999987
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703 203 ----NPMNYDTWFDYIRLEERVGNQERVREVYERAIANV 237 (365)
Q Consensus 203 ----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 237 (365)
.|....++..+|.++...|++++|...|+++++..
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 66667899999999999999999999999999863
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.77 E-value=7.3e-18 Score=127.85 Aligned_cols=169 Identities=11% Similarity=0.061 Sum_probs=143.9
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA 94 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 94 (365)
+|.....+...|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|++++...| ++..+...+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4566677899999999999999999999999999999 78999999999999999999999999999999 877766666
Q ss_pred HHHH-hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 036703 95 DFEM-KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA 173 (365)
Q Consensus 95 ~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 173 (365)
.+.. ..+....|+..++++++. .|++ +.++..+|.++. ..|++++|+..|+++++..|.......+..++.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~-~P~~----~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAA-NPDN----FELACELAVQYN---QVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 5533 334455689999999999 9988 999999999999 999999999999999999987544568888889
Q ss_pred HHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703 174 FEKQYGDREGIEDAIAGKMRLQYEDGVR 201 (365)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 201 (365)
++...|+.+ .|...|++++.
T Consensus 153 ~~~~~g~~~--------~A~~~y~~al~ 172 (176)
T 2r5s_A 153 ILSALGQGN--------AIASKYRRQLY 172 (176)
T ss_dssp HHHHHCSSC--------HHHHHHHHHHH
T ss_pred HHHHhCCCC--------cHHHHHHHHHH
Confidence 888889876 58888888774
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=5.6e-17 Score=132.94 Aligned_cols=172 Identities=10% Similarity=-0.020 Sum_probs=158.0
Q ss_pred HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703 14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN 92 (365)
Q Consensus 14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 92 (365)
...|.+...+..+|..+...|++++|+..|+++++.+|+ ..++..++.++...|++++|+..|++++..+|+.......
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 446999999999999999999999999999999999999 7899999999999999999999999999999977777777
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL 172 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 172 (365)
.+..+...++.+.|+..|++++.. .|++ ..+++.+|.++. ..|++++|+..|+++++..|.......+..++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~-~P~~----~~~~~~la~~l~---~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE-NPED----AALATQLALQLH---QVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc-CCcc----HHHHHHHHHHHH---HcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 777788899999999999999999 9998 999999999999 99999999999999999999876678899999
Q ss_pred HHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703 173 AFEKQYGDREGIEDAIAGKMRLQYEDGVR 201 (365)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 201 (365)
.++...|+.+ .|...|++++.
T Consensus 263 ~~~~~~g~~~--------~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGD--------ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTC--------HHHHHHHHHHH
T ss_pred HHHHHcCCCC--------cHHHHHHHHHH
Confidence 9999999866 57788888764
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=1.4e-17 Score=150.14 Aligned_cols=155 Identities=11% Similarity=0.096 Sum_probs=133.9
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc---chhHHHHHHHHHHh
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC---KETDRARCIYKFAL 156 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l 156 (365)
++.+|++..++..+|.++...|++++|++.|+++++. .|.+ ..++..++.++. .. |++++|...|++++
T Consensus 84 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~---~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 84 SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEE----PYITAQLLNWRR---RLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCCTTHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9988 999999999999 99 99999999999999
Q ss_pred ccCCCch
Q 036703 157 DRIPKGR 163 (365)
Q Consensus 157 ~~~p~~~ 163 (365)
+..|...
T Consensus 156 ~~~p~~~ 162 (568)
T 2vsy_A 156 AQGVGAV 162 (568)
T ss_dssp HHTCCCS
T ss_pred hcCCccc
Confidence 9988763
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.76 E-value=3.1e-17 Score=124.33 Aligned_cols=171 Identities=14% Similarity=0.054 Sum_probs=128.8
Q ss_pred CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
+|.....++..|..+...|++++|+..|+++++. .|++ +.++..+|.++. ..|++++|+..|++++...| +
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~----~~a~~~la~~~~---~~g~~~~A~~~~~~a~~~~p-~ 72 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDE-LQSR----GDVKLAKADCLL---ETKQFELAQELLATIPLEYQ-D 72 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTS----HHHHHHHHHHHH---HTTCHHHHHHHHTTCCGGGC-C
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCc----HHHHHHHHHHHH---HCCCHHHHHHHHHHhhhccC-C
Confidence 4545566777888888888888888888888888 7777 888888888888 88888888888888888777 4
Q ss_pred hhHHHHHHHHHHHH-HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703 163 RAEDLYRKFLAFEK-QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 241 (365)
. ..+...+.+.. ..+... .|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++..|...
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~--------~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 142 (176)
T 2r5s_A 73 N--SYKSLIAKLELHQQAAES--------PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ 142 (176)
T ss_dssp H--HHHHHHHHHHHHHHHTSC--------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred h--HHHHHHHHHHHHhhcccc--------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence 2 22222222211 111111 368899999999999999999999999999999999999999999998753
Q ss_pred hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
. ...+..++.++ ...|+.++|...|++++..
T Consensus 143 ~-------~~a~~~l~~~~-~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 143 D-------GEVKKTFMDIL-SALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp T-------THHHHHHHHHH-HHHCSSCHHHHHHHHHHHH
T ss_pred h-------HHHHHHHHHHH-HHhCCCCcHHHHHHHHHHH
Confidence 2 12677778777 5889999999999988763
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=3.9e-18 Score=124.76 Aligned_cols=114 Identities=9% Similarity=0.083 Sum_probs=109.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY 85 (365)
Q Consensus 7 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 85 (365)
..|++++..+|+++.+|+.+|..+...|++++|+..|++++..+|+ ...|..+|.++...|++++|+..|+++++.+|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3466778889999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
++.+|..+|.++...|++++|+..|+++++. .|++
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l-~~~~ 137 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQH-SNDE 137 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCH
Confidence 9999999999999999999999999999999 8875
No 105
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.75 E-value=1.1e-15 Score=125.73 Aligned_cols=228 Identities=7% Similarity=-0.009 Sum_probs=186.2
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh-c-cHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG-NVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY-N-EVQRARHIFER 78 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~-~-~~~~A~~~~~~ 78 (365)
++|..++++++..+|++..+|...+.+....| .+++++..+++++..+|. ..+|...+.+.... + ++++++.++.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 57999999999999999999999999999999 599999999999999999 79999999888887 7 89999999999
Q ss_pred HHHhCCcchHHHHHHHHHHHhhcchH--------HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch------
Q 036703 79 LVQCHPYNLSAWINFADFEMKMGEVD--------RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE------ 144 (365)
Q Consensus 79 ~l~~~p~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 144 (365)
+++.+|.+..+|...+-+....|.++ ++++.++++++. .|.+ ..+|...+.+.. ..+.
T Consensus 151 ~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-dp~N----~SAW~~R~~lL~---~l~~~~~~~~ 222 (349)
T 3q7a_A 151 SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-DGRN----NSAWGWRWYLRV---SRPGAETSSR 222 (349)
T ss_dssp HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHT---TSTTCCCCHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---hccccccchH
Confidence 99999999999999999999998888 999999999999 9998 999999999998 7775
Q ss_pred -hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh------------hhHHHHHHHHHHHHHHHHc------CCC
Q 036703 145 -TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG------------IEDAIAGKMRLQYEDGVRK------NPM 205 (365)
Q Consensus 145 -~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~l~~------~p~ 205 (365)
++++++.+++++...|.+ ...|.-...+....|.... ..+.............+.. .+.
T Consensus 223 ~~~eELe~~~~aI~~~P~n--~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHN--VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 789999999999999998 4567666556656554310 0000000111111111111 256
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-cCCCc
Q 036703 206 NYDTWFDYIRLEERVGNQERVREVYERAIA-NVPPA 240 (365)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~ 240 (365)
++.++..+++++...|+.++|.++++...+ .+|-.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 788999999999999999999999999874 46654
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.74 E-value=2.8e-16 Score=128.78 Aligned_cols=170 Identities=11% Similarity=0.008 Sum_probs=150.3
Q ss_pred hhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH
Q 036703 48 HWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE 126 (365)
Q Consensus 48 ~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 126 (365)
...|+ ...+..++..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.. .|+. .
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~----~ 185 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDT----R 185 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSH----H
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcch----H
Confidence 34477 6788899999999999999999999999999999999999999999999999999999999998 8864 5
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC
Q 036703 127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN 206 (365)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~ 206 (365)
..+...+..+. ..++.++|+..|++++...|++ ...+..++..+...|+.+ .|+..|+++++.+|++
T Consensus 186 ~~~~~~~~~l~---~~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~~~g~~~--------~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 186 YQGLVAQIELL---XQAADTPEIQQLQQQVAENPED--AALATQLALQLHQVGRNE--------EALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHH---HHHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHH---hhcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccHH--------HHHHHHHHHHhccccc
Confidence 55566666677 7888899999999999999987 678999999999999866 6999999999999998
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 036703 207 --YDTWFDYIRLEERVGNQERVREVYERAIA 235 (365)
Q Consensus 207 --~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 235 (365)
..++..++.++...|+.++|...|++++.
T Consensus 253 ~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 88999999999999999999999999875
No 107
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.1e-17 Score=140.75 Aligned_cols=281 Identities=9% Similarity=0.004 Sum_probs=150.3
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
++++|+..|.++ .++..|...+..+...|++++|+.+++.+.+..+++.+...++.++.+.|+++++.++++
T Consensus 47 ~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--- 118 (449)
T 1b89_A 47 MVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN--- 118 (449)
T ss_dssp -------------------------------------------------------------------CHHHHTTTTT---
T ss_pred CHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---
Confidence 356788888663 346689999999999999999999999999876667778889999999999999998885
Q ss_pred HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
.| +...|..+|..+...|.+++|+.+|.++ ..|..++.++. +.|++++|.+.++++.
T Consensus 119 --~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------------~n~~~LA~~L~---~Lg~yq~AVea~~KA~---- 175 (449)
T 1b89_A 119 --GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLV---HLGEYQAAVDGARKAN---- 175 (449)
T ss_dssp --CC-----------------CTTTHHHHHHHT-------------TCHHHHHHHHH---TTTCHHHHHHHHHHHT----
T ss_pred --CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------------hhHHHHHHHHH---HhccHHHHHHHHHHcC----
Confidence 36 5579999999999999999999999964 25788899999 9999999999999992
Q ss_pred CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703 161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 240 (365)
.+..|...+..+...|+++ .|..+... +..+| +-...++.+|.+.|.+++|+.+++.++...+.+
T Consensus 176 ---~~~~Wk~v~~aCv~~~ef~--------lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 176 ---STRTWKEVCFACVDGKEFR--------LAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp ---CHHHHHHHHHHHHHTTCHH--------HHHHTTTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred ---CchhHHHHHHHHHHcCcHH--------HHHHHHHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 2678999999898999876 45444443 33444 445568889999999999999999999999877
Q ss_pred hhhhHHHHhHHHHHHHHHHHh-hccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHh
Q 036703 241 EEKRYWQRYIYLWINYALYKE-VDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLE 319 (365)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 319 (365)
.. +|..++.++. ...++..+.++.|...+.+.+....+ .+..+|..++-+|...++++.|....-....
T Consensus 241 ~~---------~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~-~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~ 310 (449)
T 1b89_A 241 MG---------MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA-EQAHLWAELVFLYDKYEEYDNAIITMMNHPT 310 (449)
T ss_dssp HH---------HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH-HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred HH---------HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence 43 6666666652 13345566666666666664200000 1155678999999999999999876655433
Q ss_pred h------------CcchHHHHHHHHHHHhh
Q 036703 320 W------------SPENCYAWSKYTELEKS 337 (365)
Q Consensus 320 ~------------~p~~~~~~~~~~~~~~~ 337 (365)
. .+.|.+++...+.++..
T Consensus 311 ~a~~~~~f~~~~~kv~n~elyYkai~fyl~ 340 (449)
T 1b89_A 311 DAWKEGQFKDIITKVANVELYYRAIQFYLE 340 (449)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 3 45678888888888873
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=4.6e-15 Score=122.07 Aligned_cols=244 Identities=12% Similarity=0.043 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc-c-hhH
Q 036703 70 QRARHIFERLVQCHPYNLSAWINFADFEMKMG-EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC-K-ETD 146 (365)
Q Consensus 70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 146 (365)
++|+.++.+++..+|++..+|...+.++...| .+++++.+++.++.. .|++ ..+|...+.+.. .. + +++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-nPKn----y~aW~hR~wlL~---~l~~~~~~ 142 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-NLKS----YQVWHHRLLLLD---RISPQDPV 142 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-TCCC----HHHHHHHHHHHH---HHCCSCCH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH---HhcCCChH
Confidence 34444444444444444444444444444444 244444444444444 4444 444444444444 33 3 444
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----
Q 036703 147 RARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN---- 222 (365)
Q Consensus 147 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~---- 222 (365)
+++..+.++++.+|.+ ...|.--.-+....|..+.........++..++++++.+|.|..+|...+.+....+.
T Consensus 143 ~EL~~~~k~L~~dpkN--y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKN--YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTTC--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccc
Confidence 4444444444444443 2223222222222111110001123368889999999999999999999999888876
Q ss_pred ---HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhH-----------------HHHHHHHHHhccc
Q 036703 223 ---QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER-----------------TRDVYRTLFIFYF 282 (365)
Q Consensus 223 ---~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------a~~~~~~a~~~~~ 282 (365)
++++.+.+.+++..+|.+.. +|..+..++. ..|.... --.+-+.++....
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~S---------aW~Ylr~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVS---------AWNYLRGFLK-HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHH-HTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHH-hcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 78999999999999999964 6766555542 4443200 0112222222211
Q ss_pred c----CCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHH-hhCcchHHHHHHHHHH
Q 036703 283 S----FSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL-EWSPENCYAWSKYTEL 334 (365)
Q Consensus 283 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~ 334 (365)
. ...+ +.+-.+..+++++...|+.++|.++++.+. +.+|-....|...+..
T Consensus 291 ~~~~~~~~~-~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 291 DPLPEDTPL-PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp -CCCSSCCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cccccccCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 1 1111 336677778888888888888999998886 5688777777766543
No 109
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.73 E-value=3.8e-14 Score=116.18 Aligned_cols=200 Identities=10% Similarity=0.053 Sum_probs=162.5
Q ss_pred HhcCChh-HHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 31 ENLGNVA-GARQIFERWMHWMPD-HEGWLSYIKFKLRYNE----------VQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 31 ~~~g~~~-~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
.+.|.++ +|+..+.+++..+|+ ..+|.....+....+. ++++..++.+++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 4566665 799999999999999 7899998888877665 689999999999999999999999999999
Q ss_pred hhcc--hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch-hHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703 99 KMGE--VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE-TDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175 (365)
Q Consensus 99 ~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 175 (365)
..|. +++++.++.++++. .|.+ ..+|...+.+.. ..|. ++++++.+.+++..+|.+ ...|.....+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~-dprN----y~AW~~R~~vl~---~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll 189 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEA-DERN----FHCWDYRRFVAA---QAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLL 189 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence 9884 89999999999999 9998 999999999998 8888 599999999999999998 45666655555
Q ss_pred HHcCCch------hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhcCC
Q 036703 176 KQYGDRE------GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV-----------GNQERVREVYERAIANVP 238 (365)
Q Consensus 176 ~~~~~~~------~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~~~~p 238 (365)
...+... ......++.++..+.+++..+|++..+|+.+.-++... +..+++++.+.++++..|
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 4442111 01112456899999999999999999998665554433 346677777888887777
Q ss_pred Cc
Q 036703 239 PA 240 (365)
Q Consensus 239 ~~ 240 (365)
++
T Consensus 270 d~ 271 (331)
T 3dss_A 270 EN 271 (331)
T ss_dssp TC
T ss_pred cc
Confidence 76
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.73 E-value=1e-16 Score=117.52 Aligned_cols=115 Identities=12% Similarity=0.027 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703 6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP 84 (365)
Q Consensus 6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 84 (365)
-..|++++..+|++..++..+|..+...|++++|+..|++++..+|+ ...|..++.++...|++++|+..|++++..+|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35689999999999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+++.++..+|.++...|++++|+..|+++++. .|.+
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 122 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL-IANX 122 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTC
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCC
Confidence 99999999999999999999999999999999 8876
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=1.5e-17 Score=121.59 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=108.6
Q ss_pred HHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703 41 QIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA 119 (365)
Q Consensus 41 ~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 119 (365)
..+++++.++|+ ...|..+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P 101 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GK 101 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CC
Confidence 456777888898 7899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
++ +.+|+.+|.++. ..|++++|+..|+++++..|++
T Consensus 102 ~~----~~~~~~lg~~~~---~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 102 ND----YTPVFHTGQCQL---RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp SC----CHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCCH
T ss_pred CC----cHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCH
Confidence 98 999999999999 9999999999999999999875
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.72 E-value=6.4e-16 Score=111.34 Aligned_cols=133 Identities=19% Similarity=0.308 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
.+|..+|.++...|++++|+..|+++++..|. ...|..++.++...|++++|...+++++...|.++.++..++.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57889999999999999999999999999998 78899999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
.|++++|+..++++++. .|.+ ..++..++.++. ..|++++|...|++++...|.
T Consensus 82 ~~~~~~A~~~~~~~~~~-~~~~----~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL-DPRS----AEAWYNLGNAYY---KQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHh-CCCC----hHHHHHHHHHHH---HHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999 8887 889999999999 999999999999999987775
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.72 E-value=1.5e-16 Score=113.10 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=107.2
Q ss_pred HHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh
Q 036703 45 RWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD 123 (365)
Q Consensus 45 ~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 123 (365)
|+..++|+ ...+...|..+.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. .|.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~-- 80 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-DSKF-- 80 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC--
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-hhhh--
Confidence 45567888 7889999999999999999999999999999999999999999999999999999999999999 9988
Q ss_pred hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703 124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL 172 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 172 (365)
..+|..+|.++. ..|++++|+..|+++++..|++ ..++..+.
T Consensus 81 --~~a~~~lg~~~~---~~~~~~~A~~~~~~al~l~P~~--~~a~~~l~ 122 (126)
T 4gco_A 81 --IKGYIRKAACLV---AMREWSKAQRAYEDALQVDPSN--EEAREGVR 122 (126)
T ss_dssp --HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred --hHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCcCC--HHHHHHHH
Confidence 999999999999 9999999999999999999987 34444443
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=8.9e-17 Score=117.18 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=107.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703 7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY 85 (365)
Q Consensus 7 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 85 (365)
..|++++..+|++...+..+|..+...|++++|+..|++++..+|+ ...|..++.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 5788899999999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
++.++..+|.++...|++++|+..|+++++. .|.+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 119 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARAL-AAAQ 119 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Confidence 9999999999999999999999999999999 8876
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=4.1e-17 Score=136.75 Aligned_cols=149 Identities=9% Similarity=0.176 Sum_probs=139.1
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh----------------HHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH----------------EGWLSYIKFKLR 65 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~~~~~~~ 65 (365)
+++|+..|++++...|++..+|..+|.++...|++++|+..|+++++..|+. .+|..++.++..
T Consensus 129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208 (336)
T ss_dssp EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999999999999999999999999999984 799999999999
Q ss_pred hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703 66 YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET 145 (365)
Q Consensus 66 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (365)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+ ..++..++.++. ..|++
T Consensus 209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~----~~a~~~l~~~~~---~~~~~ 280 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNN----KAAKTQLAVCQQ---RIRRQ 280 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSC----HHHHHHHHHHHH---HHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCC----HHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999999999999999999999999999999999 9998 899999999999 99999
Q ss_pred HHH-HHHHHHHhcc
Q 036703 146 DRA-RCIYKFALDR 158 (365)
Q Consensus 146 ~~A-~~~~~~~l~~ 158 (365)
++| ...|++++..
T Consensus 281 ~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 281 LAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 988 5577777653
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=2e-16 Score=142.65 Aligned_cols=167 Identities=11% Similarity=0.127 Sum_probs=135.4
Q ss_pred cCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHH
Q 036703 33 LGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111 (365)
Q Consensus 33 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 111 (365)
.|++++|+..|+++++.+|+ ...|..++.++...|++++|...|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHH
Q 036703 112 CAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGK 191 (365)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (365)
++++. .|.+ ..++..+|.++. ..|++++|+..|+++++..|.+ ...+..++..+...+++.. .++
T Consensus 82 ~al~~-~p~~----~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~g~-----~~~ 146 (568)
T 2vsy_A 82 QASDA-APEH----PGIALWLGHALE---DAGQAEAAAAAYTRAHQLLPEE--PYITAQLLNWRRRLCDWRA-----LDV 146 (568)
T ss_dssp HHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCTT-----HHH
T ss_pred HHHhc-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhcccc-----HHH
Confidence 99999 9988 999999999999 9999999999999999999986 5788888888888832222 337
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHH
Q 036703 192 MRLQYEDGVRKNPMNYDTWFDYI 214 (365)
Q Consensus 192 a~~~~~~~l~~~p~~~~~~~~~~ 214 (365)
|...|+++++.+|.+...+..++
T Consensus 147 A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 147 LSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999988777666
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=9.6e-16 Score=127.00 Aligned_cols=205 Identities=10% Similarity=0.068 Sum_probs=163.0
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV 80 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 80 (365)
++++|..+++++.+..|.. ++...++++.|...|.++ +.++...|++++|...|.+++
T Consensus 6 ~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al 63 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYLQEA 63 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH
Confidence 3678888888888876652 111147788888888776 567778899999999999999
Q ss_pred HhCCcc------hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHH
Q 036703 81 QCHPYN------LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIY 152 (365)
Q Consensus 81 ~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 152 (365)
...+.. ..++..+|.++...|++++|+..|+++++. .+.. ......++..+|.++. . |++++|+..|
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~~~~g~~~~~a~~~~~lg~~~~---~-g~~~~A~~~~ 138 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM-YVENGTPDTAAMALDRAGKLME---P-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHHT---T-TCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH---c-CCHHHHHHHH
Confidence 876532 557889999999999999999999999988 6532 1233578889999999 8 9999999999
Q ss_pred HHHhccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCC
Q 036703 153 KFALDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN------YDTWFDYIRLEERVGN 222 (365)
Q Consensus 153 ~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~------~~~~~~~~~~~~~~~~ 222 (365)
++++...|... ....+..++.++...|+++ +|+..|++++...|.+ ...+..++.++...|+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFD--------EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 99998765431 2467788888888999866 6999999999876544 2477888889999999
Q ss_pred HHHHHHHHHHHHhcCCCch
Q 036703 223 QERVREVYERAIANVPPAE 241 (365)
Q Consensus 223 ~~~A~~~~~~~~~~~p~~~ 241 (365)
+++|+..|++++ ..|...
T Consensus 211 ~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHh-CCCCCC
Confidence 999999999999 888654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=7.7e-16 Score=127.59 Aligned_cols=239 Identities=11% Similarity=0.037 Sum_probs=170.1
Q ss_pred hcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHH
Q 036703 32 NLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 111 (365)
..|++++|..+++++.+..+.. ++...++++.|...|.++ +.++...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~--------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS--------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC--------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc--------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHH
Confidence 4577888999999888766641 011147888888888876 567888999999999999
Q ss_pred HHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc----hhHHHHHHHHHHHHHcCCchhhh
Q 036703 112 CAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG----RAEDLYRKFLAFEKQYGDREGIE 185 (365)
Q Consensus 112 ~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~ 185 (365)
++++. .+.. .......+..++.++. ..|++++|+..|++++...+.. .....+..++.++.. |+++
T Consensus 61 ~al~~-~~~~~~~~~~a~~~~~lg~~~~---~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~--- 132 (307)
T 2ifu_A 61 QEAEA-HANNRSLFHAAKAFEQAGMMLK---DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS--- 132 (307)
T ss_dssp HHHHH-HHHTTCHHHHHHHHHHHHHHHH---HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH---
T ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH---
Confidence 99998 6532 2234668889999999 9999999999999999864321 124566677777766 7754
Q ss_pred HHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703 186 DAIAGKMRLQYEDGVRKNPMN------YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259 (365)
Q Consensus 186 ~~~~~~a~~~~~~~l~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 259 (365)
+|+..|++++...|.. ..++..+|.++...|++++|+..|++++...|.+.... .....++..+.+
T Consensus 133 -----~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~g~~ 204 (307)
T 2ifu_A 133 -----KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP---TCYKKCIAQVLV 204 (307)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh---HHHHHHHHHHHH
Confidence 6888999988876643 46788889999999999999999999988755432100 112356666666
Q ss_pred HhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHH
Q 036703 260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK 312 (365)
Q Consensus 260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 312 (365)
+ ...|++++|+..|++++ ..|..... ........++..+ ..|+.+.+..
T Consensus 205 ~-~~~g~~~~A~~~~~~al-~~p~~~~~-~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 205 Q-LHRADYVAAQKCVRESY-SIPGFSGS-EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp H-HHTTCHHHHHHHHHHHT-TSTTSTTS-HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred H-HHcCCHHHHHHHHHHHh-CCCCCCCC-HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 5 57799999999999999 87655332 1233444445444 4566544433
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=3.1e-16 Score=114.93 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 38 GARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 38 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
.+...|++++..+|+ ...+..++..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344678999999998 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
.|++ +.++..+|.++. ..|++++|+..|+++++..|.+.
T Consensus 85 -~p~~----~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 85 -DIXE----PRFPFHAAECLL---QXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp -STTC----THHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHTTCG
T ss_pred -CCCC----chHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCcCCC
Confidence 9988 999999999999 99999999999999999888754
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.68 E-value=4.1e-16 Score=127.32 Aligned_cols=196 Identities=9% Similarity=0.021 Sum_probs=151.7
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD 95 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 95 (365)
|.+...+..+|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 667889999999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhhcCChhh-HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703 96 FEMKMGEVDRARNVYECAVEIFLADDHDE-AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174 (365)
Q Consensus 96 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 174 (365)
++...|++++|+..|+++++. .|++... ...++..+. ..++...........|.. ..+...+..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~--~~i~~~l~~l 146 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL-AKEQRLNFGDDIPSALR-----------IAKKKRWNSIEERRIHQE--SELHSYLTRL 146 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHTTCCCCSHHHHHHH-----------HHHHHHHHHHHHTCCCCC--CHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhh--HHHHHHHHHH
Confidence 999999999999999999999 7754000 012222221 111122222222334443 2344444443
Q ss_pred HHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhc
Q 036703 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV-GNQERVREVYERAIAN 236 (365)
Q Consensus 175 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~ 236 (365)
. .|+ .++|+..++++++.+|++..+...+..++... +.+++|..+|.++.+.
T Consensus 147 ~--~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 I--AAE--------RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp H--HHH--------HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred H--HHH--------HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3 232 33688999999999999988888888776655 7789999999998875
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.68 E-value=2.5e-16 Score=125.43 Aligned_cols=199 Identities=9% Similarity=-0.132 Sum_probs=170.1
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHH-------HHHHHhcCChhHHHHHHHHHHhhCCC---------------------
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNY-------IRMEENLGNVAGARQIFERWMHWMPD--------------------- 52 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~p~--------------------- 52 (365)
+...|+..|.+++..+|+.+++|.++ +.++...+...+++..+.+.+.+.|.
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~ 100 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTS 100 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSS
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCC
Confidence 46789999999999999999999999 89999999999999999999997775
Q ss_pred -hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHH
Q 036703 53 -HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVA 131 (365)
Q Consensus 53 -~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (365)
..+++.++.++...|++++|...|..++...|++. ..+.++.++.+.+++++|+..|+.+... . .+ .....+++.
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~-~~~~~a~~~ 176 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DK-FLAGAAGVA 176 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CH-HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-Cc-ccHHHHHHH
Confidence 13456789999999999999999999999999888 9999999999999999999999977665 2 11 112458999
Q ss_pred HHHHHHhccccchhHHHHHHHHHHhccC--CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703 132 FAKFEEMGCNCKETDRARCIYKFALDRI--PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 209 (365)
+|..+. ..|++++|+..|++++... |.. ....+...+......|+.+ +|+..|++++..+|+ ..+
T Consensus 177 LG~al~---~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~d--------eA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 177 HGVAAA---NLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNES--------AAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHSCC-HHH
T ss_pred HHHHHH---HCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCc-HHH
Confidence 999999 9999999999999998643 331 3567888888888999866 799999999999999 888
Q ss_pred HHHHHHH
Q 036703 210 WFDYIRL 216 (365)
Q Consensus 210 ~~~~~~~ 216 (365)
+..+...
T Consensus 244 ~~aL~~~ 250 (282)
T 4f3v_A 244 AAALKDP 250 (282)
T ss_dssp HHHHHCT
T ss_pred HHHHhCC
Confidence 7777544
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.67 E-value=5.3e-16 Score=123.49 Aligned_cols=193 Identities=12% Similarity=-0.027 Sum_probs=166.1
Q ss_pred hcCChhHHHHHHHHHHhhCCC-hHHHHHH-------HHHHHHhccHHHHHHHHHHHHHhCCcch----------------
Q 036703 32 NLGNVAGARQIFERWMHWMPD-HEGWLSY-------IKFKLRYNEVQRARHIFERLVQCHPYNL---------------- 87 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~-------~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------------- 87 (365)
..++...|+..|.++++.+|+ ...|..+ +.++...+...++...+.+.+.+.|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 578999999999999999999 8999999 7888888888999999999999777543
Q ss_pred -----HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 88 -----SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 88 -----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.+++.++.++...|++++|.+.|..++.. .|.+ . ..+.++.++. +.+++++|+..|+.+....++.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-~p~~----~-~~~~~a~l~~---~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-GSEH----L-VAWMKAVVYG---AAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-TCHH----H-HHHHHHHHHH---HTTCHHHHHHHHTTGGGCSCHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCch----H-HHHHHHHHHH---HcCCHHHHHHHHHHhhccCCcc
Confidence 34556899999999999999999999888 7665 6 8899999999 9999999999999887643221
Q ss_pred hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703 163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN--PM-NYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 239 (365)
....++..++..+...|.++ +|+..|++++... |. ..++++.+|.++...|+.++|+..|++++...|.
T Consensus 169 ~~~~a~~~LG~al~~LG~~~--------eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFT--------EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 12457888888999999876 6999999998654 65 5679999999999999999999999999999998
Q ss_pred chh
Q 036703 240 AEE 242 (365)
Q Consensus 240 ~~~ 242 (365)
..
T Consensus 241 -~~ 242 (282)
T 4f3v_A 241 -PK 242 (282)
T ss_dssp -HH
T ss_pred -HH
Confidence 53
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.67 E-value=1.3e-15 Score=115.55 Aligned_cols=120 Identities=7% Similarity=0.102 Sum_probs=114.0
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHH-HHHhccH--HHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKF-KLRYNEV--QRARHIF 76 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~-~~~~~~~--~~A~~~~ 76 (365)
++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+ ...|..++.+ +...|++ ++|...|
T Consensus 25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~ 104 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104 (177)
T ss_dssp --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999998 7899999999 8889998 9999999
Q ss_pred HHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 77 ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 77 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
++++..+|+++.++..+|.++...|++++|+..|+++++. .|.+
T Consensus 105 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 148 (177)
T 2e2e_A 105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL-NSPR 148 (177)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCC
Confidence 9999999999999999999999999999999999999999 8876
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=6.8e-15 Score=104.77 Aligned_cols=116 Identities=10% Similarity=0.044 Sum_probs=107.3
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD 95 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 95 (365)
|..+..|...|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 556788999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhh------cCChhhHHHHHHHHHHHHH
Q 036703 96 FEMKMGEVDRARNVYECAVEIFL------ADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 96 ~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~ 137 (365)
++...|++++|+..|+++++. . |.+ ..++..+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~-~p~~~~~p~~----~~~~~~l~~~~~ 123 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK-DAEVNNGSSA----REIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHTTTTH----HHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh-CcccCCchhH----HHHHHHHHHHHH
Confidence 999999999999999999999 8 665 777776666544
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=6.2e-16 Score=126.29 Aligned_cols=193 Identities=12% Similarity=0.031 Sum_probs=154.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++. .|.+ ..++..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~l 78 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQS----VKAHFFL 78 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTC----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCC----HHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999 9988 9999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCCch---hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGR---AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 209 (365)
|.++. ..|++++|+..|+++++..|.+. ...++..+... ++...........|.+..+
T Consensus 79 g~~~~---~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i 139 (281)
T 2c2l_A 79 GQCQL---EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA----------------KKKRWNSIEERRIHQESEL 139 (281)
T ss_dssp HHHHH---HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH----------------HHHHHHHHHHTCCCCCCHH
T ss_pred HHHHH---HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhhHHH
Confidence 99999 99999999999999999877542 11223222111 1223333344567778788
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
...++.+. .|++++|++.++++++..|.+.. +...+...+....+.+++|..+|.++.+.
T Consensus 140 ~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 140 HSYLTRLI--AAERERELEECQRNHEGHEDDGH---------IRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHH---------HTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHH--HHHHHHHHHHHHhhhccccchhh---------hhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 77777764 78999999999999999998743 33334444322346788999999988764
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.65 E-value=1.1e-14 Score=113.87 Aligned_cols=138 Identities=14% Similarity=0.009 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
...+..+|..+...|++++|+..|++++ .|+..+|..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3457788999999999999999999995 56788999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhhhhcCC------------hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 100 MGEVDRARNVYECAVEIFLADD------------HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
.|++++|+..|+++++. .|.+ .+....++..+|.++. ..|++++|+..|+++++..|...
T Consensus 84 ~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYA---KKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHHHHHHHHHH---HccCHHHHHHHHHHHHHcCcccc
Confidence 99999999999999998 7764 1233589999999999 99999999999999999999764
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.64 E-value=2.2e-14 Score=107.28 Aligned_cols=130 Identities=13% Similarity=0.017 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM 98 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 98 (365)
+..|..+|..+...|++++|+..|+++++..|. ..+|..++.++...|++++|...|++++..+|+++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 577999999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhhhhcCChhhHHHHHH--HHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFV--AFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
..|++++|+..|+++++. .|.+ ..++. ..+..+. ..|++++|+..++++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~-~p~~----~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV-KPHD----KDAKMKYQECNKIV---KQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHH---HHHHHHHHHHcccchHH
Confidence 999999999999999999 9887 66774 4455577 88999999999988754
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=8.1e-15 Score=111.11 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=114.9
Q ss_pred HhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH-HHhhcch--HHH
Q 036703 31 ENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF-EMKMGEV--DRA 106 (365)
Q Consensus 31 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~~--~~A 106 (365)
...|++++|+..++++++.+|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4568899999999999999998 79999999999999999999999999999999999999999999 8889998 999
Q ss_pred HHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 107 RNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
+..|+++++. .|.+ ..++..+|.++. ..|++++|+..|+++++..|.+.
T Consensus 101 ~~~~~~al~~-~p~~----~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 101 RAMIDKALAL-DSNE----ITALMLLASDAF---MQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHh-CCCc----HHHHHHHHHHHH---HcccHHHHHHHHHHHHhhCCCCc
Confidence 9999999999 9988 999999999999 99999999999999999999864
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=4.3e-17 Score=136.61 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=128.5
Q ss_pred hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---------------hHHHHHHHH
Q 036703 32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---------------LSAWINFAD 95 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~~~ 95 (365)
..+++++|+..|++++...|. ...|..++..+...|++++|+..|++++..+|++ ..+|..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456777899899999888888 7899999999999999999999999999999988 599999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703 96 FEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175 (365)
Q Consensus 96 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 175 (365)
++...|++++|+..|+++++. .|.+ ..+++.+|.++. ..|++++|+..|+++++..|.+ ...+..++.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l~P~~--~~a~~~l~~~~ 274 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALEL-DSNN----EKGLSRRGEAHL---AVNDFELARADFQKVLQLYPNN--KAAKTQLAVCQ 274 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence 999999999999999999999 9988 999999999999 9999999999999999999987 56777777777
Q ss_pred HHcCCch
Q 036703 176 KQYGDRE 182 (365)
Q Consensus 176 ~~~~~~~ 182 (365)
...|+..
T Consensus 275 ~~~~~~~ 281 (336)
T 1p5q_A 275 QRIRRQL 281 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
No 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.63 E-value=4.9e-14 Score=101.32 Aligned_cols=135 Identities=18% Similarity=0.291 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA 133 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (365)
.+|..++..+...|++++|...|++++..+|++...+..++.++...|++++|+..+++++.. .|.+ ..++..++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~ 76 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRS----AEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----HHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCCc----hHHHHHHH
Confidence 468889999999999999999999999999999999999999999999999999999999999 8887 88999999
Q ss_pred HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN 206 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~ 206 (365)
.++. ..|++++|+..++++++..|.. ...+..++.++...|+.+ +|...+++++..+|++
T Consensus 77 ~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~--------~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 77 NAYY---KQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYD--------EAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHH---TTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHHSTTC
T ss_pred HHHH---HhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHH--------HHHHHHHHHHccCCCC
Confidence 9999 9999999999999999988876 567888888888888865 6999999999988864
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.62 E-value=3e-15 Score=108.99 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=106.0
Q ss_pred HHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703 41 QIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA 119 (365)
Q Consensus 41 ~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 119 (365)
..|++++..+|+ ...+..++..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.. .|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC
Confidence 578888888998 7889999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
.+ +.++..+|.++. ..|++++|+..|+++++..|.+.
T Consensus 84 ~~----~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 84 NE----PRFPFHAAECHL---QLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp TC----THHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CC----cHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCc
Confidence 88 999999999999 99999999999999999888653
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.62 E-value=1.3e-14 Score=103.84 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=115.7
Q ss_pred HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703 14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN 92 (365)
Q Consensus 14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 92 (365)
..+|.+...|..+|..+...|++++|+..|++++...|+ ..+|..++.++...|++++|...+++++..+|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 345677889999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET 145 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (365)
+|.++...|++++|+..|+++++. .|.+ ..++..++.++. ..|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~-~p~~----~~~~~~l~~~~~---~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALEL-DPDN----ETYKSNLKIAEL---KLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-Cccc----hHHHHHHHHHHH---HHhcC
Confidence 999999999999999999999999 9888 889999999988 77764
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-14 Score=103.56 Aligned_cols=120 Identities=14% Similarity=0.092 Sum_probs=113.0
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA 94 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 94 (365)
.|.+...|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++++.+|+++.++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 5777899999999999999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK 143 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (365)
.++...|++++|+..|+++++. .|.+ ..++..++.++. ..|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~-~p~~----~~~~~~l~~~~~---~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL-DSSC----KEAADGYQRCMM---AQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CGGG----THHHHHHHHHHH---HHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHh-CCCc----hHHHHHHHHHHH---Hhc
Confidence 9999999999999999999999 8877 888998988887 554
No 134
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.62 E-value=1.1e-14 Score=100.82 Aligned_cols=120 Identities=17% Similarity=0.262 Sum_probs=105.8
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHH
Q 036703 201 RKNPMNYDTWFDYIRLEERVGNQ------ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY 274 (365)
Q Consensus 201 ~~~p~~~~~~~~~~~~~~~~~~~------~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 274 (365)
-..|++++.|..++......|+. ++.++.|++++...|++. ...|++|+.+|+.||.+. ..++.++|+.+|
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy 83 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAELK--AIQEPDDARDYF 83 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHHH--HHHCGGGCHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHHH--HhcCHHHHHHHH
Confidence 35799999999999999999999 999999999999999986 789999999999999995 559999999999
Q ss_pred HHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHH
Q 036703 275 RTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329 (365)
Q Consensus 275 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 329 (365)
+.+++.+..+ ..+|..+++++.+.|++..|++++.+++...|.......
T Consensus 84 ~~a~~~hKkF------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 84 QMARANCKKF------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHHHHCTTB------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHHHHhHHH------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 9999875222 778899999999999999999999999999997666543
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=2.9e-13 Score=105.60 Aligned_cols=179 Identities=11% Similarity=-0.012 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc----chHHHHHHHHHH
Q 036703 38 GARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG----EVDRARNVYECA 113 (365)
Q Consensus 38 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~A~~~~~~a 113 (365)
+|.+.|+++.+. .++.++..++.++...+++++|...|+++.+. .++.++..+|.++.. + ++++|+..|+++
T Consensus 4 eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 355556666553 23555666666666666666666666666543 356666666666665 4 666677777666
Q ss_pred HhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH----cCCchhhh
Q 036703 114 VEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ----YGDREGIE 185 (365)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~ 185 (365)
.+. .+ +..+..++.++. . .+++++|+.+|+++++..|.......+..++.++.. .++
T Consensus 80 ~~~---g~----~~a~~~Lg~~y~---~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d----- 144 (212)
T 3rjv_A 80 VEA---GS----KSGEIVLARVLV---NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED----- 144 (212)
T ss_dssp HHT---TC----HHHHHHHHHHHT---CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC-----
T ss_pred HHC---CC----HHHHHHHHHHHH---cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC-----
Confidence 433 23 566666666666 5 566677777777776665532223455555555544 223
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHhcCCC
Q 036703 186 DAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV-G-----NQERVREVYERAIANVPP 239 (365)
Q Consensus 186 ~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~-----~~~~A~~~~~~~~~~~p~ 239 (365)
.++|+..|+++.+. |.++.++..++.++... | ++++|...|+++.+....
T Consensus 145 ---~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 145 ---DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp ---HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred ---HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 23677788888777 66667888888887653 3 788888888888887544
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.61 E-value=3.9e-15 Score=115.06 Aligned_cols=147 Identities=8% Similarity=0.027 Sum_probs=123.1
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h----------------HHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H----------------EGWLSYIKFKL 64 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~----------------~~~~~~~~~~~ 64 (365)
++.|.+.++......+.....+..+|..+...|++++|+..|+++++..|. + .+|..++.++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 99 (198)
T 2fbn_A 20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 99 (198)
T ss_dssp --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666788999999999999999999999999998887 4 78999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
..|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++. .|.+ ..++..++.++. ..++
T Consensus 100 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~---~~~~ 171 (198)
T 2fbn_A 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNN----LDIRNSYELCVN---KLKE 171 (198)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCc----HHHHHHHHHHHH---HHHH
Confidence 9999999999999999999999999999999999999999999999999999 9988 999999999999 8888
Q ss_pred hHHHH-HHHHHHh
Q 036703 145 TDRAR-CIYKFAL 156 (365)
Q Consensus 145 ~~~A~-~~~~~~l 156 (365)
..++. ..|.+.+
T Consensus 172 ~~~~~~~~~~~~f 184 (198)
T 2fbn_A 172 ARKKDKLTFGGMF 184 (198)
T ss_dssp HHC----------
T ss_pred HHHHHHHHHHHHh
Confidence 87776 4444443
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.60 E-value=4.8e-14 Score=101.88 Aligned_cols=123 Identities=11% Similarity=0.026 Sum_probs=107.3
Q ss_pred HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703 14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN 92 (365)
Q Consensus 14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 92 (365)
...|.++..|..+|..+...|++++|+..|++++..+|+ ..+|..++.++...|++++|...|++++..+|+++.+|..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 356788999999999999999999999999999999999 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHH
Q 036703 93 FADFEMKMGEVDRARNVYECAVEIFLADDH-DEAEQLFVAFAKFEE 137 (365)
Q Consensus 93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 137 (365)
+|.++...|++++|+..|+++++. .|+.. .....++..+..+..
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSL-AKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-ChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 77610 001555655555544
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.59 E-value=4.4e-14 Score=105.55 Aligned_cols=113 Identities=11% Similarity=0.035 Sum_probs=105.3
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA 94 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 94 (365)
.|.+...|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|++++..+|+++.+|..+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4667889999999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703 95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA 133 (365)
Q Consensus 95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (365)
.++...|++++|+..|+++++. .|.+ ...|...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA-EGNG----GSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-HSSS----CCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh-CCCc----hHHHHHHH
Confidence 9999999999999999999999 9987 55554443
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.59 E-value=1.1e-13 Score=97.99 Aligned_cols=117 Identities=18% Similarity=0.341 Sum_probs=108.2
Q ss_pred CCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703 16 SPRV-DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF 93 (365)
Q Consensus 16 ~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 93 (365)
+|.. ..+|..+|.++...|++++|+..|+++++..|+ ...|..++.++...|++++|...|++++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 5655 788999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 94 ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
+.++...|++++|...|+++++. .|.+ +.++..++.++.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~ 122 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALEL-DPNN----AEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH
Confidence 99999999999999999999999 8888 888888888776
No 140
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.59 E-value=1.7e-13 Score=106.95 Aligned_cols=190 Identities=12% Similarity=-0.024 Sum_probs=151.9
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhc----cHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYN----EVQRARHIFER 78 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~A~~~~~~ 78 (365)
++|+..|+++.+. .++.++..+|.++...+++++|+..|+++.+.. ++.++..++.++.. + ++++|...|++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 4688999999975 678999999999999999999999999998752 37888999999887 7 89999999999
Q ss_pred HHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHHHH
Q 036703 79 LVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRARC 150 (365)
Q Consensus 79 ~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~ 150 (365)
+.+ +.++.++..+|.++.. .+++++|+..|+++++. .|. ...+..+..++.++. . .+++++|+.
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~--~~~~~a~~~Lg~~y~---~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SES--DAAVDAQMLLGLIYA---SGVHGPEDDVKASE 150 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTS--HHHHHHHHHHHHHHH---HTSSSSCCHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCC--cchHHHHHHHHHHHH---cCCCCCCCHHHHHH
Confidence 954 5689999999999998 78999999999999998 652 023789999999999 7 789999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHc-C--CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 036703 151 IYKFALDRIPKGRAEDLYRKFLAFEKQY-G--DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYI 214 (365)
Q Consensus 151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~ 214 (365)
.|+++++. |.+ ...+..++.++... | .... .++|+..|+++.+.. +..+...+.
T Consensus 151 ~~~~A~~~-~~~--~~a~~~Lg~~y~~g~gg~~~~d-----~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 151 YFKGSSSL-SRT--GYAEYWAGMMFQQGEKGFIEPN-----KQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp HHHHHHHT-SCT--THHHHHHHHHHHHCBTTTBCCC-----HHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred HHHHHHHc-CCC--HHHHHHHHHHHHcCCCCCCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 99999987 333 23566666666543 3 1111 347999999999874 344444443
No 141
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=4e-15 Score=129.95 Aligned_cols=148 Identities=12% Similarity=0.200 Sum_probs=131.3
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh----------------HHHHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH----------------EGWLSYIKFKLR 65 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~~~~~~~ 65 (365)
+++|+..|++++...|+....|..+|..+...|++++|+..|+++++.+|.. .+|..++.++.+
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888899999999999999999999999999999999998873 789999999999
Q ss_pred hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703 66 YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET 145 (365)
Q Consensus 66 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (365)
.|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++. .|.+ ..++..++.++. ..+++
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~~----~~a~~~l~~~~~---~~~~~ 401 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQN----KAARLQISMCQK---KAKEH 401 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--------CHHHHHHHHHH---HHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999999999999999999999999999999999 9887 899999999999 99998
Q ss_pred HHHHH-HHHHHhc
Q 036703 146 DRARC-IYKFALD 157 (365)
Q Consensus 146 ~~A~~-~~~~~l~ 157 (365)
+++.. .|++++.
T Consensus 402 ~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 402 NERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 87764 4555544
No 142
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.59 E-value=1.3e-12 Score=105.37 Aligned_cols=272 Identities=10% Similarity=0.048 Sum_probs=188.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703 28 RMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR 105 (365)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 105 (365)
+-.+-.|++..++.- +-++.|. ...-.-..+.+..+|++... ....| ...+...++.++. +.
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~~~~-~~~a~~~la~~~~--~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ-------DPTSK-LGKVLDLYVQFLD--TK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC-------CSSST-THHHHHHHHHHHT--TT---
T ss_pred HHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC-------CCCCH-HHHHHHHHHHHhc--cc---
Confidence 445567999988873 3445555 33334445667777776532 11222 2335555566553 22
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh
Q 036703 106 ARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE 185 (365)
Q Consensus 106 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (365)
|+..+++.+.. .+.+ ...+..+|.++. ..|++++|++++.+++...|.......+...+.++...|+.+
T Consensus 85 a~~~l~~l~~~-~~~~----~~~~~~la~i~~---~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d--- 153 (310)
T 3mv2_B 85 NIEELENLLKD-KQNS----PYELYLLATAQA---ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS--- 153 (310)
T ss_dssp CCHHHHHTTTT-SCCC----HHHHHHHHHHHH---HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHhc-CCCC----cHHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH---
Confidence 78888888876 5444 556678899999 999999999999999988773334788888899999999866
Q ss_pred HHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHH--HHHhC--CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703 186 DAIAGKMRLQYEDGVRKNPM----NYDTWFDYIRL--EERVG--NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA 257 (365)
Q Consensus 186 ~~~~~~a~~~~~~~l~~~p~----~~~~~~~~~~~--~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 257 (365)
.|++.++++.+.+|+ +..+...++.. ....| ++.+|..+|+++....|+... ..++++
T Consensus 154 -----~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~-------~~lLln-- 219 (310)
T 3mv2_B 154 -----TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT-------QLGLLN-- 219 (310)
T ss_dssp -----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH-------HHHHHH--
T ss_pred -----HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc-------HHHHHH--
Confidence 799999999998883 22444444433 44445 999999999999988886211 112233
Q ss_pred HHHhhccCChhHHHHHHHHHHhccccCCCc---ch-hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHH
Q 036703 258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPR---ME-ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTE 333 (365)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 333 (365)
.+ ..+|++++|...++.+++..|+...- -| ++++..+.+.+....|+ +|.++++++.+.+|+++.+.
T Consensus 220 -~~-~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~----- 290 (310)
T 3mv2_B 220 -LH-LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK----- 290 (310)
T ss_dssp -HH-HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH-----
T ss_pred -HH-HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH-----
Confidence 33 58899999999999888775431000 03 47888888888888887 99999999999999998763
Q ss_pred HHhhccchhHHHHHHHHHhcCc
Q 036703 334 LEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 334 ~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
++.+....|++++.+.
T Consensus 291 ------d~~~k~~~Fd~~~~ky 306 (310)
T 3mv2_B 291 ------HHQEIDAKFDELVRKY 306 (310)
T ss_dssp ------HHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHHHHh
Confidence 3445556666666544
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.57 E-value=5.9e-14 Score=98.84 Aligned_cols=100 Identities=14% Similarity=0.003 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
..++.+|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhhhhcCC
Q 036703 100 MGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 100 ~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
.|++++|+..|+++++. .|..
T Consensus 98 ~g~~~~A~~~~~~al~~-~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS-QPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHh-CcCC
Confidence 99999999999999999 8764
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.57 E-value=1.1e-13 Score=108.15 Aligned_cols=134 Identities=15% Similarity=0.029 Sum_probs=119.1
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|++++ .| ++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+++
T Consensus 21 ~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 21 DWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97 (213)
T ss_dssp CHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4788999999885 45 5889999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhCCcch----------------HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703 80 VQCHPYNL----------------SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK 143 (365)
Q Consensus 80 l~~~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (365)
++..|.+. .++..+|.++...|++++|+..|+++++. .|.+ ..+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~-------------------~~~ 157 (213)
T 1hh8_A 98 LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM-KSEP-------------------RHS 157 (213)
T ss_dssp HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCSG-------------------GGG
T ss_pred HHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc-Cccc-------------------ccc
Confidence 99888766 99999999999999999999999999999 8876 445
Q ss_pred hhHHHHHHHHHHhc
Q 036703 144 ETDRARCIYKFALD 157 (365)
Q Consensus 144 ~~~~A~~~~~~~l~ 157 (365)
..+.++..+.+...
T Consensus 158 ~~~~a~~~~~~~~~ 171 (213)
T 1hh8_A 158 KIDKAMECVWKQKL 171 (213)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhccc
Confidence 56666666665444
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.56 E-value=2.9e-13 Score=94.73 Aligned_cols=114 Identities=16% Similarity=0.089 Sum_probs=106.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
.+..|..+|..+...|++++|+..|++++...|+ ...|..++.++...|++++|...+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4678999999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
...|++++|+..|+++++. .|.+ +.++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH-EANN----PQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT-CTTC----HHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHc-CCCC----HHHHHHHHHhhc
Confidence 9999999999999999999 9888 888888777653
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.56 E-value=1.7e-13 Score=102.40 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=107.8
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|...|++++..+|.+..+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+++
T Consensus 28 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHhCCcchHHHHHHH--HHHHhhcchHHHHHHHHHHHhh
Q 036703 80 VQCHPYNLSAWINFA--DFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 80 l~~~p~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+..+|++..++..++ ..+...|++++|+..+.++...
T Consensus 108 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999998885544 4488889999999999988776
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.56 E-value=6.9e-14 Score=99.44 Aligned_cols=103 Identities=8% Similarity=0.009 Sum_probs=94.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-------H
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-------S 88 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~ 88 (365)
++...++..+|..+.+.|++++|+..|+++++++|+ ..+|..+|.++...|++++|+..|+++++.+|++. .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 344677889999999999999999999999999999 78999999999999999999999999999988653 4
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703 89 AWINFADFEMKMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
++..+|.++...|++++|++.|+++++. .|+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~-~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE-FRD 115 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-SCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcC
Confidence 7888899999999999999999999998 775
No 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=2e-13 Score=121.70 Aligned_cols=168 Identities=10% Similarity=0.060 Sum_probs=153.0
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc--cH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN----------VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN--EV 69 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~--~~ 69 (365)
++|...+++++..+|++..+|...+.+....|+ +++++..++++++.+|. ..+|...+.+....| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 578999999999999999999999999999988 89999999999999999 799999999999999 77
Q ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc------
Q 036703 70 QRARHIFERLVQCHPYNLSAWINFADFEMKMG-EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC------ 142 (365)
Q Consensus 70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 142 (365)
+++...+.++++.+|.+..+|...+.+....| .++++++.++++++. .|.+ ..+|...+.++. ..
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-~p~n----~saW~~r~~ll~---~l~~~~~~ 197 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSN----YSSWHYRSCLLP---QLHPQPDS 197 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCC----HHHHHHHHHHHH---HHSCCCCS
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCC----ccHHHHHHHHHH---hhcccccc
Confidence 99999999999999999999999999999999 899999999999999 9998 999999998877 53
Q ss_pred --------chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703 143 --------KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180 (365)
Q Consensus 143 --------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 180 (365)
+.++++++.+.+++...|.+. ..|.-...+....+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHHHHhcCCC
Confidence 778999999999999999984 566666655555444
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.2e-13 Score=98.14 Aligned_cols=99 Identities=15% Similarity=-0.004 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...|...|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|.+ ..+|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNF----VRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCc----HHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999 9988 9999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccC
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRI 159 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~ 159 (365)
|.++. ..|++++|+..|+++++..
T Consensus 79 g~~~~---~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 79 ATAQI---AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHhCHHHHHHHHHHHHHhC
Confidence 99999 9999999999999999988
No 150
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=7.4e-14 Score=124.50 Aligned_cols=198 Identities=10% Similarity=0.080 Sum_probs=166.6
Q ss_pred hcCC-hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 32 NLGN-VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE----------VQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 32 ~~g~-~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
..|. .++|+..+.+++..+|+ ..+|...+.+....|+ ++++...+.+++..+|.+..+|...+-++.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444 46789999999999999 7999999999988888 9999999999999999999999999999999
Q ss_pred hc--chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703 100 MG--EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK-ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176 (365)
Q Consensus 100 ~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 176 (365)
.| +++++++.++++++. .|.+ ..+|...+.+.. ..| .++++++.+.++++.+|.+ ...|.....+..
T Consensus 120 l~~~~~~~el~~~~k~l~~-d~~N----~~aW~~R~~~l~---~l~~~~~~el~~~~~~I~~~p~n--~saW~~r~~ll~ 189 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA-DERN----FHCWDYRRFVAA---QAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLP 189 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTCCCHHHHHHHHHTTTTTTCCC--HHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhh-cccc----ccHHHHHHHHHH---HcCCChHHHHHHHHHHHHHCCCC--ccHHHHHHHHHH
Confidence 99 669999999999999 9998 999999999999 888 8999999999999999998 456666665555
Q ss_pred HcCCch------hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHhcCC
Q 036703 177 QYGDRE------GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQER------------VREVYERAIANVP 238 (365)
Q Consensus 177 ~~~~~~------~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~------------A~~~~~~~~~~~p 238 (365)
..+... .+....++++++.+.+++..+|++..+|+.++-++...+.+++ |+..|.+++...|
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~ 269 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGS 269 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTB
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccc
Confidence 532210 1112346689999999999999999999999999988777555 4455677776665
Q ss_pred C
Q 036703 239 P 239 (365)
Q Consensus 239 ~ 239 (365)
.
T Consensus 270 ~ 270 (567)
T 1dce_A 270 R 270 (567)
T ss_dssp T
T ss_pred c
Confidence 5
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=1.1e-13 Score=97.35 Aligned_cols=101 Identities=18% Similarity=0.077 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA 133 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (365)
..|...+..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. .|.+ ..++..+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~----~~~~~~la 92 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKD----IAVHAALA 92 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999 9988 99999999
Q ss_pred HHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
.++. ..|++++|+..|+++++..|..
T Consensus 93 ~~~~---~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 93 VSHT---NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHC-----
T ss_pred HHHH---HcCCHHHHHHHHHHHHHhCcCC
Confidence 9999 9999999999999999998864
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.4e-13 Score=98.06 Aligned_cols=118 Identities=10% Similarity=0.034 Sum_probs=110.8
Q ss_pred hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH
Q 036703 15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW 90 (365)
Q Consensus 15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 90 (365)
..|.+...|..+|..+...|++++|+..|+++++..|+ ..+|..++.++...|++++|+..+++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 45778899999999999999999999999999999998 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
..+|.++...|++++|+..|+++++. .|.+ ..++..++.+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL-EPKN----KVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-CSSC----HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc----HHHHHHHHHHHh
Confidence 99999999999999999999999999 9988 888888877765
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.54 E-value=2.1e-13 Score=97.74 Aligned_cols=121 Identities=12% Similarity=0.023 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703 203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF 282 (365)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 282 (365)
.|.+...|..+|..+...|++++|...|++++...|.+. .++..++..+ ...|++++|+..++++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~- 80 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------KLYSNRAACY-TKLLEFQLALKDCEECIQLE- 80 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---------HHHHHHHHHH-TTTTCHHHHHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------HHHHHHHHHH-HHhccHHHHHHHHHHHHHhC-
Confidence 466778999999999999999999999999999999874 3788888887 69999999999999999987
Q ss_pred cCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc
Q 036703 283 SFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE 340 (365)
Q Consensus 283 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 340 (365)
|+ +..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|+
T Consensus 81 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 ------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 54 77889999999999999999999999999999999999999999987764
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=1e-13 Score=96.18 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=101.0
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--chHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY--NLSAWIN 92 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~ 92 (365)
+|++..+|..+|.++...|++++|+..|+++++..|. ..+|..++.++...|++++|...|+++++.+|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 6888999999999999999999999999999999998 789999999999999999999999999999999 9999999
Q ss_pred HHHHHHhh-cchHHHHHHHHHHHhhhhcCC
Q 036703 93 FADFEMKM-GEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 93 ~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+|.++... |++++|++.+++++.. .|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~-~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE-HHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG-CCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc-ccCC
Confidence 99999999 9999999999999999 8764
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.54 E-value=3.1e-13 Score=96.04 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLF 129 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~ 129 (365)
..++..+|..+.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. .|.. ......++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV-GRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh-CcccchhhHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999998 7754 12234688
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
..+|.++. ..|++++|++.|++++...|+.
T Consensus 87 ~~lg~~~~---~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 87 SRAGNAFQ---KQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHhhCcCH
Confidence 89999999 9999999999999999988764
No 156
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.53 E-value=1.3e-12 Score=107.43 Aligned_cols=175 Identities=9% Similarity=-0.026 Sum_probs=139.3
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H------EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-- 86 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-- 86 (365)
+|.....+...+..+...|++++|...++++++..|. . ..+..++.++...|++++|...|++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3555566778889999999999999999999998776 1 234456777888899999999999999865433
Q ss_pred ----hHHHHHHHHHHHhhcchHHHHHHHHHHHhhh--hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 87 ----LSAWINFADFEMKMGEVDRARNVYECAVEIF--LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 87 ----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
..++..+|.++...|++++|+..|+++++.. .|.+......++.++|.++. ..|++++|+..|+++++..+
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~---~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY---LDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH---HHhhHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999430 45431222378999999999 99999999999999998643
Q ss_pred Cc----hhHHHHHHHHHHHHHcCCchhhhHHHHHHH-HHHHHHHHH
Q 036703 161 KG----RAEDLYRKFLAFEKQYGDREGIEDAIAGKM-RLQYEDGVR 201 (365)
Q Consensus 161 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~l~ 201 (365)
.. ....++...+.++...|+.+ +| ...|++++.
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~--------~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEE--------AEIEDAYKKASF 265 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCH--------HHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHH
Confidence 21 13567888899999999876 46 666777775
No 157
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.53 E-value=8.6e-13 Score=106.50 Aligned_cols=184 Identities=11% Similarity=0.034 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC--C-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--D-HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
|+..|++.+...+.+...+..+|.++...|++++|++.+.+++..+| . ..+....+.++...|+.+.|++.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56778888877655567778999999999999999999999999987 4 68888999999999999999999999999
Q ss_pred hCCc----chHHHHHHHHH--HHhhc--chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703 82 CHPY----NLSAWINFADF--EMKMG--EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153 (365)
Q Consensus 82 ~~p~----~~~~~~~~~~~--~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 153 (365)
.+|+ +..+...++.. ....| ++.+|..+|+++.+. .|+. ....++.+ ++. .+|++++|...++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~--~~~~lLln---~~~---~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTW--KTQLGLLN---LHL---QQRNIAEAQGIVE 235 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSH--HHHHHHHH---HHH---HHTCHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCc--ccHHHHHH---HHH---HcCCHHHHHHHHH
Confidence 9993 23334444433 44445 999999999999888 7751 11333333 788 9999999999999
Q ss_pred HHhccC----------CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703 154 FALDRI----------PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209 (365)
Q Consensus 154 ~~l~~~----------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 209 (365)
.+++.. |.+ +......+.+....|+ .|.+.++++.+.+|+++.+
T Consensus 236 ~l~~~~p~~~~k~~~~p~~--~~~LaN~i~l~~~lgk----------~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYK--PTFLANQITLALMQGL----------DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSH--HHHHHHHHHHHHHTTC----------TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcccccccccCCCCC--HHHHHHHHHHHHHhCh----------HHHHHHHHHHHhCCCChHH
Confidence 888764 444 6667677666667775 3778999999999999654
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.52 E-value=3.9e-13 Score=100.38 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...|..++..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|.+ ..+|..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKY----SKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC----HHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999 9988 9999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCCchh
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRA 164 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 164 (365)
|.++. ..|++++|+..|+++++..|.+..
T Consensus 86 g~~~~---~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARF---DMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHH---HTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHH---HccCHHHHHHHHHHHHHhCCCchH
Confidence 99999 999999999999999999998753
No 159
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.52 E-value=2.1e-13 Score=98.08 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChh----------HHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc---
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVA----------GARQIFERWMHWMPD-HEGWLSYIKFKLRYN--- 67 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~----------~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~--- 67 (365)
|++|+..|+++++.+|+++.+|..+|.++...++++ +|+..|+++++++|+ ..+|..+|.++.+.|
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 567777888888888888888887777777776643 677777777777776 566777776666653
Q ss_pred --------cHHHHHHHHHHHHHhCCcc
Q 036703 68 --------EVQRARHIFERLVQCHPYN 86 (365)
Q Consensus 68 --------~~~~A~~~~~~~l~~~p~~ 86 (365)
++++|+..|+++++++|++
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 5666666666666666654
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.51 E-value=5.3e-13 Score=99.40 Aligned_cols=114 Identities=8% Similarity=-0.046 Sum_probs=103.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhh------------------CCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHW------------------MPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
....+...|..+...|++++|+..|.+++.. +|. ..+|..++.++...|++++|+..+.++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3677899999999999999999999999998 555 578999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH-HHHHHHHHHHH
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE-QLFVAFAKFEE 137 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 137 (365)
+..+|+++.++..+|.++...|++++|+..|+++++. .|.+ . .+...+..+..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~p~~----~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-HPAA----ASVVAREMKIVTE 143 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CGGG----HHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9887 5 55666665555
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.51 E-value=3.9e-14 Score=109.42 Aligned_cols=144 Identities=12% Similarity=-0.024 Sum_probs=115.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch----------------H
Q 036703 26 YIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL----------------S 88 (365)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~ 88 (365)
.+......|.+++|...++......+. ...|...|..+...|++++|...|.+++...|.++ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344445567777777777665554444 57889999999999999999999999999999887 8
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHH
Q 036703 89 AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLY 168 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 168 (365)
++..+|.++...|++++|+..++++++. .|.+ ..++..+|.++. ..|++++|+..|+++++..|.+ ..++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~p~~--~~~~ 159 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI-DKNN----VKALYKLGVANM---YFGFLEEAKENLYKAASLNPNN--LDIR 159 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHSTTC--HHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cccc----HHHHHHHHHHHH---HcccHHHHHHHHHHHHHHCCCc--HHHH
Confidence 9999999999999999999999999999 9988 999999999999 9999999999999999999987 4566
Q ss_pred HHHHHHHHHcC
Q 036703 169 RKFLAFEKQYG 179 (365)
Q Consensus 169 ~~~~~~~~~~~ 179 (365)
..+..+....+
T Consensus 160 ~~l~~~~~~~~ 170 (198)
T 2fbn_A 160 NSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 162
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.50 E-value=8.3e-12 Score=102.60 Aligned_cols=178 Identities=10% Similarity=-0.056 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh----HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703 126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA----EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR 201 (365)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 201 (365)
...+...+..+. ..|++++|.+.++++++..+.... ...+...+.++...|+.+ +|+..|++++.
T Consensus 75 ~~~l~~~~~~~~---~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~ 143 (293)
T 2qfc_A 75 KKQFKDQVIMLC---KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE--------YCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHH--------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHH
Confidence 556667788888 999999999999999987765431 123334455666667755 79999999998
Q ss_pred cCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHH
Q 036703 202 KNPMN------YDTWFDYIRLEERVGNQERVREVYERAI---ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRD 272 (365)
Q Consensus 202 ~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 272 (365)
..+.. ..++..+|.++...|++++|...|++++ ...|.+... .+.++.++|..+ ...|++++|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~-----~~~~~~nlg~~y-~~~~~y~~Al~ 217 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF-----DVKVRYNHAKAL-YLDSRYEESLY 217 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----HHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc-----hHHHHHhHHHHH-HHHhhHHHHHH
Confidence 65543 4688999999999999999999999999 456654321 124788889888 69999999999
Q ss_pred HHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccH-HHHHHHHHhh
Q 036703 273 VYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPC-RKLYEKYLEW 320 (365)
Q Consensus 273 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 320 (365)
.+++++...+.....+....++..+|.++...|++++| ...|++++..
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 99999988633222111277899999999999999999 8889999875
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.50 E-value=7.4e-13 Score=94.53 Aligned_cols=115 Identities=9% Similarity=0.048 Sum_probs=104.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-------hH
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-------LS 88 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~ 88 (365)
|..+..|..+|..+...|++++|+..|++++...|. ..+|..++.++...|++++|...+++++...|++ +.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 445778999999999999999999999999999998 7899999999999999999999999999998876 88
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 89 AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
++..+|.++...|++++|+..|+++++. .| + +..+..++.+..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~-~----~~~~~~l~~~~~ 123 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE-HR-T----PDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-C----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CC-C----HHHHHHHHHHHH
Confidence 9999999999999999999999999999 77 4 677777776665
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.50 E-value=1.5e-14 Score=126.86 Aligned_cols=135 Identities=13% Similarity=0.033 Sum_probs=118.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
.+..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455677788888999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH--HHhccccchhHHHHHHHH-----------HHhccCCC
Q 036703 98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF--EEMGCNCKETDRARCIYK-----------FALDRIPK 161 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~-----------~~l~~~p~ 161 (365)
...|++++|++.|+++++. .|.+ ..++..++.+ +. ..|++++|++.++ +++...|.
T Consensus 85 ~~~g~~~eA~~~~~~al~~-~p~~----~~~~~~l~~~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKV-KPHD----KDAKMKYQECNKIV---KQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHH-STTC----TTHHHHHHHHHHHH---HHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHH---HHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 9999999999999999999 8887 7788888877 77 8899999999999 77776654
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.49 E-value=1.4e-12 Score=93.01 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHH
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINF 93 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~ 93 (365)
..++.+|..+...|++++|+..|+++++..|+ . .+|..+|.++...|++++|+..|++++..+|++ +.++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 35778899999999999999999999999998 4 699999999999999999999999999999998 8889999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 94 ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
|.++...|++++|+..|+++++. .|++ +.+......+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~-~p~~----~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ-YPGS----DAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-STTS----HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-CCCC----hHHHHHHHHHHH
Confidence 99999999999999999999999 9987 555554444433
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=2e-12 Score=90.38 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...|..++..+...|++++|...|++++..+|+++.++..+|.++...|++++|...++++++. .|.+ +.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDW----GKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-Cccc----HHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999999 9888 9999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 174 (365)
|.++. ..|++++|...|+++++..|.+ ...+..+..+
T Consensus 79 a~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~ 115 (118)
T 1elw_A 79 AAALE---FLNRFEEAKRTYEEGLKHEANN--PQLKEGLQNM 115 (118)
T ss_dssp HHHHH---HTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHH
T ss_pred HHHHH---HHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHh
Confidence 99999 9999999999999999999986 4555555443
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.49 E-value=5e-13 Score=96.39 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------h------HHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-------H------EGWLSYIKFKLRYNEVQRARHIFERLVQC---- 82 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---- 82 (365)
...+...|..+...|++++|+..|+++++++|+ . .+|...+.++...|++++|+..|+++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999997 1 28999999999999999999999999999
Q ss_pred ---CCcchHHH----HHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 83 ---HPYNLSAW----INFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 83 ---~p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+|++..+| +..|..+...|++++|+..|+++++. .|.+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel-~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM-IEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc-CCCc
Confidence 99999999 99999999999999999999999999 8876
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.49 E-value=1.4e-12 Score=100.90 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=126.2
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC------C-hHHHHHHHHHHHHhccHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP------D-HEGWLSYIKFKLRYNEVQRAR 73 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~-~~~~~~~~~~~~~~~~~~~A~ 73 (365)
++++|...++......+....++..+|.++...|++++|+..+++++.... . ..++..++.++...|++++|.
T Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467777755554443336688999999999999999999999999998432 2 567889999999999999999
Q ss_pred HHHHHHHHh---CCc----chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccch
Q 036703 74 HIFERLVQC---HPY----NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKE 144 (365)
Q Consensus 74 ~~~~~~l~~---~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
..+++++.. .++ ...++..+|.++...|++++|+..+++++.. .+.. ......++..++.++. ..|+
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~la~~~~---~~g~ 162 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY-AQQADDQVAIACAFRGLGDLAQ---QEKN 162 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH---HTTC
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHHHHH---HCcC
Confidence 999999987 442 3567889999999999999999999999976 4322 1223456788999999 9999
Q ss_pred hHHHHHHHHHHhccC
Q 036703 145 TDRARCIYKFALDRI 159 (365)
Q Consensus 145 ~~~A~~~~~~~l~~~ 159 (365)
+++|...++++++..
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 169
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=1.8e-12 Score=92.40 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...|..++..+...|+++.|...|++++..+|+++.++..+|.++...|++++|+..++++++. .|.+ ..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~ 86 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAY----SKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccC----HHHHHHH
Confidence 5688899999999999999999999999999999999999999999999999999999999999 9888 9999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 180 (365)
|.++. ..|++++|+..|+++++..|.+ ...+..++.++...|+
T Consensus 87 ~~~~~---~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALS---SLNKHVEAVAYYKKALELDPDN--ETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHH---HTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTT
T ss_pred HHHHH---HhCCHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHHhc
Confidence 99999 9999999999999999999876 4667777776666554
No 170
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=2e-12 Score=91.39 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...|..++..+...|++++|...|++++...|++..++..++.++...|++++|+..++++++. .|.+ ..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNN----AEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCcc----HHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999 8887 8999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703 133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 176 (365)
+.++. ..|++++|...|++++...|.+ ...+..++..+.
T Consensus 84 a~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~ 122 (125)
T 1na0_A 84 GNAYY---KQGDYDEAIEYYQKALELDPNN--AEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHHH---HhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Confidence 99999 9999999999999999999876 445555555443
No 171
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.49 E-value=1.3e-12 Score=107.50 Aligned_cols=154 Identities=8% Similarity=-0.087 Sum_probs=127.9
Q ss_pred ChhhHHHHHHHHHHhCCCchH------HHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhc
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQ------LWNNYIRMEENLGNVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYN 67 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~------~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~ 67 (365)
++++|...+++++...|..+. .+..+|.++...|++++|+..|++++...+. ..++..+|.++...|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 578999999999998776654 2335888888899999999999999986544 236889999999999
Q ss_pred cHHHHHHHHHHHHHh-------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHh
Q 036703 68 EVQRARHIFERLVQC-------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEM 138 (365)
Q Consensus 68 ~~~~A~~~~~~~l~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~ 138 (365)
++++|...|+++++. .+....++..+|.++...|++++|+..++++++. .+.. ......++..+|.++.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~-~~~~~~~~~~~~~~~~lg~~~~- 247 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI-SCRINSMALIGQLYYQRGECLR- 247 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTBCTTHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHcCcHHHHHHHHHHHHHHHH-
Confidence 999999999999952 2223568899999999999999999999999988 5432 1233789999999999
Q ss_pred ccccch-hHHHHHHHHHHhcc
Q 036703 139 GCNCKE-TDRARCIYKFALDR 158 (365)
Q Consensus 139 ~~~~~~-~~~A~~~~~~~l~~ 158 (365)
..|+ +++|+..|++++..
T Consensus 248 --~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 248 --KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp --HTTCCHHHHHHHHHHHHHH
T ss_pred --HhCCcHHHHHHHHHHHHHH
Confidence 9995 69999999999864
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=6.3e-13 Score=92.07 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=99.8
Q ss_pred CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHH
Q 036703 50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAE 126 (365)
Q Consensus 50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~ 126 (365)
+|+ ...|..++.++...|++++|...|+++++.+|.+..++..+|.++...|++++|+..|+++++. .|. + .
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~----~ 76 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYN----K 76 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTC----H
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-Ccccch----H
Confidence 466 6788999999999999999999999999999999999999999999999999999999999999 988 7 9
Q ss_pred HHHHHHHHHHHhcccc-chhHHHHHHHHHHhccCCCc
Q 036703 127 QLFVAFAKFEEMGCNC-KETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~ 162 (365)
.++..++.++. .. |++++|++.+++++...|.+
T Consensus 77 ~~~~~l~~~~~---~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 77 DVWAAKADALR---YIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHT---TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHH---HHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999999 99 99999999999999998875
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=7e-14 Score=117.13 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=95.0
Q ss_pred HHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh------------------HHHHHHHHHHHHhccHHHHHH
Q 036703 13 VTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH------------------EGWLSYIKFKLRYNEVQRARH 74 (365)
Q Consensus 13 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~~~~~~~~~~~~~~~~~A~~ 74 (365)
+...|.....|..+|..+...|++++|+..|++++...|+. .+|..++.++...|++++|+.
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33445567889999999999999999999999999999983 389999999999999999999
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703 75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF 154 (365)
Q Consensus 75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 154 (365)
.|+++++.+|+++.+|+.+|.++...|++++|+..|+++++. .|.+ ..++..++.+... ..+..+++...|++
T Consensus 252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-~p~~----~~a~~~L~~l~~~--~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-APDD----KAIRRELRALAEQ--EKALYQKQKEMYKG 324 (338)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 8887 8888888887430 55778889999999
Q ss_pred HhccCCCc
Q 036703 155 ALDRIPKG 162 (365)
Q Consensus 155 ~l~~~p~~ 162 (365)
++...|.+
T Consensus 325 ~l~~~p~~ 332 (338)
T 2if4_A 325 IFKGKDEG 332 (338)
T ss_dssp --------
T ss_pred hhCCCCCC
Confidence 99888765
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.47 E-value=1.5e-12 Score=93.95 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=98.6
Q ss_pred CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHH
Q 036703 50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQL 128 (365)
Q Consensus 50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 128 (365)
+|. ...|..++..+...|++++|...|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|.+ +.+
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~ 79 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQS----VKA 79 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cchh----HHH
Confidence 444 7889999999999999999999999999999999999999999999999999999999999999 9988 999
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 129 FVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
|..+|.++. ..|++++|+..|++++...|.
T Consensus 80 ~~~l~~~~~---~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 80 HFFLGQCQL---EMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHhhHHHHHHHHHHHHHHChh
Confidence 999999999 999999999999999998776
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.47 E-value=5.7e-13 Score=95.87 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=77.6
Q ss_pred HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcch----------HHHHHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 036703 65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV----------DRARNVYECAVEIFLADDHDEAEQLFVAFAK 134 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (365)
+.+.+++|+..++++++.+|+++..|+.+|.++...+++ ++|+..|+++++. .|+. ..+|+.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-dP~~----~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-DPKK----DEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTC----HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-CcCc----HHHHHHHHH
Confidence 456788999999999999999999999999999888765 5999999999999 9998 999999999
Q ss_pred HHHhccccc-----------hhHHHHHHHHHHhccCCCc
Q 036703 135 FEEMGCNCK-----------ETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 135 ~~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~ 162 (365)
.|. ..| ++++|+..|+++++..|++
T Consensus 89 ay~---~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 89 AYT---SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHH---HhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 999 775 6777777777777777765
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.45 E-value=8.7e-14 Score=121.52 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=122.6
Q ss_pred hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---------------hHHHHHHHH
Q 036703 32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---------------LSAWINFAD 95 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~~~ 95 (365)
..+++++|+..|++++...|. ...|..++..+...|++++|+..|+++++.+|.+ ..+|..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888 7899999999999999999999999999999988 689999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703 96 FEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE 175 (365)
Q Consensus 96 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 175 (365)
++.+.|++++|+..|+++++. .|.+ ..+|+.+|.++. ..|++++|+..|+++++..|.+ ..++..+..++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~~g~a~~---~~g~~~~A~~~~~~al~l~P~~--~~a~~~l~~~~ 395 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGL-DSAN----EKGLYRRGEAQL---LMNEFESAKGDFEKVLEVNPQN--KAARLQISMCQ 395 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTC------CHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc-CCcc----HHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 999999999999999999999 9988 999999999999 9999999999999999999987 45667776666
Q ss_pred HHcCCch
Q 036703 176 KQYGDRE 182 (365)
Q Consensus 176 ~~~~~~~ 182 (365)
...++..
T Consensus 396 ~~~~~~~ 402 (457)
T 1kt0_A 396 KKAKEHN 402 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.45 E-value=3.7e-13 Score=94.26 Aligned_cols=88 Identities=6% Similarity=0.106 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHh---CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTL---SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFE 77 (365)
Q Consensus 2 ~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~ 77 (365)
+++|+..|+++++. +|+++.+|..+|.++...|++++|+..|+++++.+|+ ..++..++.++...|++++|+..|+
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555555555 3555555555555555555555555555555555555 4555555555555555555555555
Q ss_pred HHHHhCCcchHH
Q 036703 78 RLVQCHPYNLSA 89 (365)
Q Consensus 78 ~~l~~~p~~~~~ 89 (365)
+++...|+++.+
T Consensus 86 ~al~~~p~~~~~ 97 (117)
T 3k9i_A 86 KIIAETSDDETI 97 (117)
T ss_dssp HHHHHHCCCHHH
T ss_pred HHHHhCCCcHHH
Confidence 555555555443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.43 E-value=4.1e-13 Score=117.72 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=102.5
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+++
T Consensus 21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHH--HHhhcchHHHHHHHH
Q 036703 80 VQCHPYNLSAWINFADF--EMKMGEVDRARNVYE 111 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~--~~~~~~~~~A~~~~~ 111 (365)
++.+|++..++..++.+ +...|++++|++.++
T Consensus 101 l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 101 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988 888999999999999
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.43 E-value=6.6e-13 Score=92.96 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=81.0
Q ss_pred hcCChhHHHHHHHHHHhh---CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHH
Q 036703 32 NLGNVAGARQIFERWMHW---MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRAR 107 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~---~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~ 107 (365)
..|++++|+..|+++++. +|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 466 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCC
Q 036703 108 NVYECAVEIFLADD 121 (365)
Q Consensus 108 ~~~~~a~~~~~~~~ 121 (365)
..|++++.. .|.+
T Consensus 82 ~~~~~al~~-~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAE-TSDD 94 (117)
T ss_dssp HHHHHHHHH-HCCC
T ss_pred HHHHHHHHh-CCCc
Confidence 999999999 9987
No 180
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.42 E-value=2.6e-11 Score=99.62 Aligned_cols=176 Identities=10% Similarity=-0.067 Sum_probs=132.7
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHH----HHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC
Q 036703 128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED----LYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN 203 (365)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 203 (365)
.+...+..+. ..|++++|...++++++..+...... .+...+.++...++.+ .|+..|++++...
T Consensus 77 ~l~~~i~~~~---~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 77 QFKDQVIMLC---KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE--------YCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHH--------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHH---HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHH--------HHHHHHHHHHHHh
Confidence 3444566677 89999999999999999776554222 2333555555555644 7999999999865
Q ss_pred CCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHH
Q 036703 204 PMN------YDTWFDYIRLEERVGNQERVREVYERAIAN---VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY 274 (365)
Q Consensus 204 p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 274 (365)
+.. ..++..+|.++...|++++|...|+++++. .|.+.. ..+.++.++|.++ ...|++++|+..+
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~nlg~~y-~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE-----FDVKVRYNHAKAL-YLDSRYEESLYQV 219 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH-----HHHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh-----HHHHHHHHHHHHH-HHHhHHHHHHHHH
Confidence 443 237899999999999999999999999963 222221 1245788899988 6999999999999
Q ss_pred HHHHhccccCCCcchhHHHHHHHHHHHHHhCC-CccHHHHHHHHHhh
Q 036703 275 RTLFIFYFSFSPRMEERRIFKKYIEMELCLGN-IDPCRKLYEKYLEW 320 (365)
Q Consensus 275 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~ 320 (365)
++++...+..........++..+|.++...|+ +++|.+.|++++..
T Consensus 220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999865443321227789999999999995 59999999999876
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.9e-12 Score=91.98 Aligned_cols=112 Identities=13% Similarity=0.032 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 129 (365)
...|...+..+...|++++|...|+++++.+|++ ..++..+|.++...|++++|+..++++++. .|.+ ..++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~ 102 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGD----VKAL 102 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCC----HHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccC----HHHH
Confidence 6789999999999999999999999999999987 899999999999999999999999999999 9988 9999
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 174 (365)
..+|.++. ..|++++|+..|++++...|.+ ..++..+..+
T Consensus 103 ~~~a~~~~---~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALE---KLGRLDQAVLDLQRCVSLEPKN--KVFQEALRNI 142 (148)
T ss_dssp HHHHHHHH---HHTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHH
T ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHH
Confidence 99999999 9999999999999999999986 4455555444
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.40 E-value=4.9e-12 Score=107.07 Aligned_cols=124 Identities=18% Similarity=0.066 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh----------------hCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMH----------------WMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC 82 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~----------------~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 82 (365)
...|..+|..+...|++++|+..|+++++ ..|. ..+|..++.++...|++++|+..++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45689999999999999999999999998 5666 689999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHH
Q 036703 83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI 151 (365)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 151 (365)
+|+++.++..+|.++...|++++|+..|+++++. .|.+ ..++..++.++. ..++.+++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~----~~~~~~l~~~~~---~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APED----KAIQAELLKVKQ---KIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9988 899999999998 88888776543
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.40 E-value=8.2e-12 Score=92.91 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQC------------------HPYNLSAWINFADFEMKMGEVDRARNVYECAV 114 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 114 (365)
...|...|..+...|++++|+..|.+++.. +|.+..+|..+|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 457888999999999999999999999998 77778999999999999999999999999999
Q ss_pred hhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 115 EIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
+. .|.+ +.+|+.+|.++. ..|++++|+..|++++...|.+.
T Consensus 91 ~~-~p~~----~~a~~~~g~~~~---~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KR-EETN----EKALFRRAKARI---AAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HH-STTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hc-CCcc----hHHHHHHHHHHH---HHhcHHHHHHHHHHHHhcCCCCH
Confidence 99 9988 999999999999 99999999999999999999873
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.39 E-value=1.5e-11 Score=87.49 Aligned_cols=104 Identities=11% Similarity=0.066 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch---HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHH
Q 036703 55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL---SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVA 131 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (365)
.+...+..+...|++++|...|++++..+|+++ .++..+|.++...|++++|+..|+++++. .|++ +..+.++..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~-~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-YPTH-DKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTS-TTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-CCCC-cccHHHHHH
Confidence 467788999999999999999999999999888 79999999999999999999999999999 8875 445778999
Q ss_pred HHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703 132 FAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 163 (365)
+|.++. ..|++++|+..|+++++..|.+.
T Consensus 82 la~~~~---~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 82 LGLSQY---GEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHH---HcCCHHHHHHHHHHHHHHCCCCh
Confidence 999999 99999999999999999999863
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.39 E-value=1.9e-12 Score=93.33 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC-----cchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh---
Q 036703 250 IYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP-----RMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW--- 320 (365)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 320 (365)
...+...|..+ ...|++++|+..|+++++..|+... ..|. ...|.+.|.++.+.|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l-~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQ-LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34667777776 6899999999999999999876311 0011 448999999999999999999999999999
Q ss_pred ----CcchHHHH----HHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703 321 ----SPENCYAW----SKYTELEKSLDETERARAIFELAIAQPILD 358 (365)
Q Consensus 321 ----~p~~~~~~----~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 358 (365)
+|++..+| ++.|.++...|++++|...|++++++.|.|
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999 999999999999999999999999999854
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=5e-11 Score=103.68 Aligned_cols=205 Identities=10% Similarity=-0.041 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h-----------------HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H-----------------EGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
|..-+.-|+-+...|++++|++.|.++++..|. . .+...++.++...|++++|...+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345666788888999999999999999998775 1 2477899999999999999999999988
Q ss_pred hCCcch------HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703 82 CHPYNL------SAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153 (365)
Q Consensus 82 ~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 153 (365)
..+... .+...++.++...|++++|..++++++.. .+.. ......++..+|.++. ..|++++|...++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF-AKREKRVFLKHSLSIKLATLHY---QKKQYKDSLALIN 159 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH-HHHSSCCSSHHHHHHHHHHHHH---HHTCHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHhCccHHHHHHHHHHHHHHH---HccChHHHHHHHH
Confidence 655322 34555677777889999999999999887 5432 1234678899999999 9999999999999
Q ss_pred HHhccCC----CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC---CCC----HHHHHHHHHHHHHhCC
Q 036703 154 FALDRIP----KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN---PMN----YDTWFDYIRLEERVGN 222 (365)
Q Consensus 154 ~~l~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~---p~~----~~~~~~~~~~~~~~~~ 222 (365)
+++.... ......++...+.++...|++. +|+..|++++... +.. ...+..+|.++...|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLA--------KSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD 231 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHH--------HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 9876432 2224678888899999999866 7889999888753 333 2456777888888999
Q ss_pred HHHHHHHHHHHHhc
Q 036703 223 QERVREVYERAIAN 236 (365)
Q Consensus 223 ~~~A~~~~~~~~~~ 236 (365)
+.+|...|.+++..
T Consensus 232 y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 232 YKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.37 E-value=9.2e-12 Score=92.35 Aligned_cols=137 Identities=9% Similarity=0.019 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN------ 86 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------ 86 (365)
..++..+|.++...|++++|+..++++++..|. ..++..++.++...|++++|...+++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 567899999999999999999999999987654 2478889999999999999999999999876532
Q ss_pred hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 87 LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
..++..+|.++...|++++|+..++++++. .+.. ......++..++.++. ..|++++|...++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYT---ALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHccchHhHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999987 5322 2344677889999999 99999999999999987543
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.37 E-value=1.1e-11 Score=88.24 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC
Q 036703 206 NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285 (365)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 285 (365)
....+..+|..+...|++++|...|++++...|.+. .++..++..+ ...|++++|+..+++++...|...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------TYITNQAAVY-FEKGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------HHHHHHHHHH-HHhccHHHHHHHHHHHHhhccccc
Confidence 457789999999999999999999999999999874 3778888887 689999999999999999976443
Q ss_pred Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc
Q 036703 286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE 340 (365)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 340 (365)
..++. +.++..+|.++...|++++|...|+++++..| +..++..++.+....++
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 22122 67889999999999999999999999999999 68888888877766554
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.37 E-value=1.1e-11 Score=86.34 Aligned_cols=84 Identities=10% Similarity=0.007 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 81 (365)
+.|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ...|..++.++...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred hCCcc
Q 036703 82 CHPYN 86 (365)
Q Consensus 82 ~~p~~ 86 (365)
..|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 88743
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.36 E-value=2.7e-12 Score=107.48 Aligned_cols=138 Identities=13% Similarity=0.095 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-----------------HHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-----------------SAWINFADFEMKMGEVDRARNVYECAVE 115 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 115 (365)
...|...+..+...|++++|+..|++++...|++. .+|..+|.++.+.|++++|+..|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999776 4899999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHH
Q 036703 116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ 195 (365)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 195 (365)
. .|.+ ..+|+.+|.++. ..|++++|+..|+++++..|.+ ..++..+..+....... .++++..
T Consensus 259 ~-~p~~----~~a~~~lg~a~~---~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~~~~~~~-------~~~a~~~ 321 (338)
T 2if4_A 259 E-EEKN----PKALFRRGKAKA---ELGQMDSARDDFRKAQKYAPDD--KAIRRELRALAEQEKAL-------YQKQKEM 321 (338)
T ss_dssp H-CTTC----HHHHHHHHHHHH---TTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred h-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 9 9988 999999999999 9999999999999999999986 45555555543322221 2267888
Q ss_pred HHHHHHcCCCCH
Q 036703 196 YEDGVRKNPMNY 207 (365)
Q Consensus 196 ~~~~l~~~p~~~ 207 (365)
|.+++...|.+.
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888764
No 191
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.33 E-value=4.3e-11 Score=92.47 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=119.8
Q ss_pred HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccc
Q 036703 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCN 141 (365)
Q Consensus 64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 141 (365)
...|++++|...++......+....++..+|.++...|++++|+..+++++.. .... .+....++..+|.++. .
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~---~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-AQKSGDHTAEHRALHQVGMVER---M 78 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHH---H
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHH---H
Confidence 35678888888555444433356788888899999999999999999998885 3321 2344678888999999 9
Q ss_pred cchhHHHHHHHHHHhcc---CCCc--hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC--CC----HHHH
Q 036703 142 CKETDRARCIYKFALDR---IPKG--RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP--MN----YDTW 210 (365)
Q Consensus 142 ~~~~~~A~~~~~~~l~~---~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p--~~----~~~~ 210 (365)
.|++++|+..+++++.. .++. .....+..++..+...|+++ +|...+++++...+ .+ ..++
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~ 150 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA--------GARQEYEKSLVYAQQADDQVAIACAF 150 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999998886 3422 23556777788888888865 68888888886432 22 2346
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703 211 FDYIRLEERVGNQERVREVYERAIANV 237 (365)
Q Consensus 211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~ 237 (365)
..++.++...|++++|...+++++...
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 889999999999999999999998864
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.31 E-value=3.4e-10 Score=98.37 Aligned_cols=212 Identities=13% Similarity=0.117 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-----------------HHHHHHHHHHHhhcchHHHHHHHHHHHhhh
Q 036703 55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-----------------SAWINFADFEMKMGEVDRARNVYECAVEIF 117 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 117 (365)
.-+.-+.-+...|++++|++.|.++++..|... .++..+|.+|...|++++|.+.+.++++.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~- 84 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY- 84 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 334557777889999999999999999887543 34788999999999999999999999987
Q ss_pred hcCCh--hhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc----hhHHHHHHHHHHHHHcCCchhhhHHHHHH
Q 036703 118 LADDH--DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG----RAEDLYRKFLAFEKQYGDREGIEDAIAGK 191 (365)
Q Consensus 118 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (365)
.+... .....+...++.++. ..|++++|..++++++...+.. ....++..++.++...|++. .
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~ 153 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQ---VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYK--------D 153 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCS---CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHH--------H
T ss_pred HHHccchHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChH--------H
Confidence 65431 112345566777777 8899999999999988743221 24678888899999999866 6
Q ss_pred HHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703 192 MRLQYEDGVRK------NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG 265 (365)
Q Consensus 192 a~~~~~~~l~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (365)
|...+++++.. .|....++...+.++...|++++|...+++++...+..+... .....++...+.++ ...+
T Consensus 154 A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~g~~~-~~~~ 230 (434)
T 4b4t_Q 154 SLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT--QTVAELDLMSGILH-CEDK 230 (434)
T ss_dssp HHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHHHHT-TSSS
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch--HHHHHHHHHHHHHH-HHHH
Confidence 88888887764 223357899999999999999999999999987633211100 00133566667776 5889
Q ss_pred ChhHHHHHHHHHHhcc
Q 036703 266 DLERTRDVYRTLFIFY 281 (365)
Q Consensus 266 ~~~~a~~~~~~a~~~~ 281 (365)
++++|...|..++...
T Consensus 231 ~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 231 DYKTAFSYFFESFESY 246 (434)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=2.7e-11 Score=102.49 Aligned_cols=108 Identities=10% Similarity=0.037 Sum_probs=102.2
Q ss_pred ChhhHHHHHHHHHH----------------hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVT----------------LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFK 63 (365)
Q Consensus 1 ~~~~A~~~~~~~l~----------------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 63 (365)
++++|+..|+++++ .+|.+..+|..+|.++...|++++|+..++++++.+|+ ..+|..++.++
T Consensus 238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 317 (370)
T 1ihg_A 238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW 317 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 57899999999998 78888999999999999999999999999999999999 88999999999
Q ss_pred HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHH
Q 036703 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARN 108 (365)
Q Consensus 64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 108 (365)
...|++++|+..|+++++.+|++..++..++.++...++.+++.+
T Consensus 318 ~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 318 QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887765
No 194
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.26 E-value=2.2e-10 Score=79.65 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=93.3
Q ss_pred hCCCchHHHHHHHHHHHhcCCh------hHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 15 LSPRVDQLWNNYIRMEENLGNV------AGARQIFERWMHWMPD---------HEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 15 ~~p~~~~~~~~~~~~~~~~g~~------~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
..|++++.|..+.......|++ +..+.+|++|+..-|- ..+|..++.+ ...+|.++|+.+|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4799999999999999999999 8999999999976653 4578888877 4568999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+..+..-..+|+.+|+++.++|+...|++++.+++.. .|.+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~-~~k~ 127 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER-GAVP 127 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBC
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CCCc
Confidence 9988777999999999999999999999999999999 8876
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.25 E-value=2e-10 Score=79.92 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 036703 37 AGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE 115 (365)
Q Consensus 37 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 115 (365)
+.|+..|+++++.+|+ ..+|..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4688999999999999 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 036703 116 IFLAD 120 (365)
Q Consensus 116 ~~~~~ 120 (365)
. .|.
T Consensus 82 ~-~~~ 85 (115)
T 2kat_A 82 A-AQS 85 (115)
T ss_dssp H-HHH
T ss_pred h-ccc
Confidence 8 764
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.24 E-value=1.5e-10 Score=85.76 Aligned_cols=146 Identities=12% Similarity=0.020 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703 207 YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286 (365)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 286 (365)
..++..+|.++...|++++|...+++++...+...... ....++..++..+ ...|++++|+..+++++...+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA---AERIAYSNLGNAY-IFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch---HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 35788899999999999999999999998755432110 1134677788887 6899999999999999988644332
Q ss_pred cchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc------chHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703 287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP------ENCYAWSKYTELEKSLDETERARAIFELAIAQPI 356 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 356 (365)
......++..+|.++...|++++|...++++++..+ ....++..++.++...|++++|...++++++...
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 101166788999999999999999999999997732 2356888999999999999999999999987654
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.24 E-value=1.6e-10 Score=76.47 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=73.7
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703 17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD 95 (365)
Q Consensus 17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 95 (365)
|.+..+|..+|.++...|++++|+..|+++++..|+ ..+|..++.++...|++++|...|+++++.+|+++.++..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 345778888999999999999999999999999888 7888889999999999999999999999999988888888888
Q ss_pred HHHhhc
Q 036703 96 FEMKMG 101 (365)
Q Consensus 96 ~~~~~~ 101 (365)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 877654
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.1e-11 Score=85.69 Aligned_cols=94 Identities=9% Similarity=-0.017 Sum_probs=85.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------hHHHH
Q 036703 19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN------LSAWI 91 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~ 91 (365)
+...|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|++++..+|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4678999999999999999999999999999998 7899999999999999999999999999999988 88889
Q ss_pred HHHHHHHhhcchHHHHHHHHH
Q 036703 92 NFADFEMKMGEVDRARNVYEC 112 (365)
Q Consensus 92 ~~~~~~~~~~~~~~A~~~~~~ 112 (365)
.++.++...|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999998888777665554
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.14 E-value=5.3e-10 Score=75.48 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=62.6
Q ss_pred hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703 15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY 85 (365)
Q Consensus 15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 85 (365)
.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++..|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 47899999999999999999999999999999999998 789999999999999999999999999988764
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.12 E-value=8.6e-08 Score=75.63 Aligned_cols=116 Identities=8% Similarity=-0.042 Sum_probs=90.5
Q ss_pred CCCchhHHHHHHHHHHHHH---cCCchhhhHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHh-----CCHHHHHH
Q 036703 159 IPKGRAEDLYRKFLAFEKQ---YGDREGIEDAIAGKMRLQYEDGVRKNPM--NYDTWFDYIRLEERV-----GNQERVRE 228 (365)
Q Consensus 159 ~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~l~~~p~--~~~~~~~~~~~~~~~-----~~~~~A~~ 228 (365)
.|.+....+|...+..-.- .|+...+.. ...|+..++++++++|+ +..+|..+|.+|... |+.++|+.
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~--l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDT--VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHH--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHh--HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4555456788887665432 344443332 45899999999999999 677999999999884 99999999
Q ss_pred HHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccC
Q 036703 229 VYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSF 284 (365)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 284 (365)
+|+++++.+|+.. +..+..|+.++....|+++.+...+++++...|..
T Consensus 226 ~ferAL~LnP~~~--------id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHD--------PDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTC--------SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCC--------chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999742 23778899987433699999999999999997553
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.11 E-value=1.4e-09 Score=71.85 Aligned_cols=80 Identities=19% Similarity=0.359 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF 132 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (365)
...|..++..+...|++++|...|++++..+|+++.++..+|.++...|++++|+..|+++++. .|.+ ..++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~----~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNN----AEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCC----HHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999 9988 8999999
Q ss_pred HHHHH
Q 036703 133 AKFEE 137 (365)
Q Consensus 133 ~~~~~ 137 (365)
+.++.
T Consensus 84 ~~~~~ 88 (91)
T 1na3_A 84 GNAKQ 88 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 202
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.08 E-value=4.6e-08 Score=85.99 Aligned_cols=178 Identities=11% Similarity=0.048 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHh--CCcch
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYIKFKLRY---------NEVQRARHIFERLVQC--HPYNL 87 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~--~p~~~ 87 (365)
..+......+.+.|++++|..+|+++.+. .|+..+|..++..+... ++.+.|..+|+++... .| +.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CH
Confidence 34667788899999999999999999874 57778888888887643 4588999999998875 46 88
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc--CCCchhH
Q 036703 88 SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR--IPKGRAE 165 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~ 165 (365)
.+|..+...+.+.|+.++|.++|+++.+.+...+ ...|..+...+. +.|+.++|.++|++..+. .|+ .
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~tyn~lI~~~~---~~g~~~~A~~l~~~M~~~G~~Pd---~ 175 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----LRSYGPALFGFC---RKGDADKAYEVDAHMVESEVVPE---E 175 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTCCCC---H
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----cceehHHHHHHH---HCCCHHHHHHHHHHHHhcCCCCC---H
Confidence 8999999999999999999999999988744555 888999999999 999999999999998874 343 5
Q ss_pred HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q 036703 166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEE 218 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~ 218 (365)
..|..++..+.+.|+.+ +|..+++++-+. .| +...+..+...+.
T Consensus 176 ~ty~~Li~~~~~~g~~d--------~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F~ 221 (501)
T 4g26_A 176 PELAALLKVSMDTKNAD--------KVYKTLQRLRDLVRQV-SKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHTSSB-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHH--------HHHHHHHHHHHhCCCc-CHHHHHHHHHHHh
Confidence 68899999999999865 688999887763 44 3455555555443
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.06 E-value=9.6e-10 Score=74.03 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703 24 NNYIRMEENLGNVAGARQIFERWMHWMPD-HE-GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG 101 (365)
Q Consensus 24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 101 (365)
+..|..+...|++++|+..|+++++.+|+ .. +|..+|.++...|++++|+..|+++++.+|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45788888999999999999999999998 67 89999999999999999999999999999988887743 6
Q ss_pred chHHHHHHHHHHHhhhhcCC
Q 036703 102 EVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 102 ~~~~A~~~~~~a~~~~~~~~ 121 (365)
.+.++...|++++.. .|++
T Consensus 76 ~~~~a~~~~~~~~~~-~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYN-QLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHH-HHCC
T ss_pred HHHHHHHHHHHHhcc-Cccc
Confidence 777888888888877 6654
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.05 E-value=2.4e-08 Score=78.70 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHhcC---------------------ChhHHHHHHHHHHh--------------
Q 036703 4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLG---------------------NVAGARQIFERWMH-------------- 48 (365)
Q Consensus 4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g---------------------~~~~A~~~~~~al~-------------- 48 (365)
-...+++..+..+|++..+....+..|...+ ++..|+++|.++..
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~ 129 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFT 129 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 3567888899999999766655555544321 24456777666544
Q ss_pred -----------------hCCC---hHHHHHHHHHHH-H--------hccHHHHHHHHHHHHHhCCc--chHHHHHHHHHH
Q 036703 49 -----------------WMPD---HEGWLSYIKFKL-R--------YNEVQRARHIFERLVQCHPY--NLSAWINFADFE 97 (365)
Q Consensus 49 -----------------~~p~---~~~~~~~~~~~~-~--------~~~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~ 97 (365)
.+|+ .-.|...+.... . .+....|+..++++++++|+ +..+|..+|.+|
T Consensus 130 ~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY 209 (301)
T 3u64_A 130 REVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFY 209 (301)
T ss_dssp HHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 1222 235666554432 1 13578899999999999998 678999999999
Q ss_pred Hhh-----cchHHHHHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHhccCCC
Q 036703 98 MKM-----GEVDRARNVYECAVEIFLAD-DHDEAEQLFVAFAKFEEMGCN-CKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 98 ~~~-----~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~ 161 (365)
... |+.++|+..|+++++. .|+ + ..++..+|.++. . .|+++++...+++++...|.
T Consensus 210 ~~vPp~~gGd~ekA~~~ferAL~L-nP~~~----id~~v~YA~~l~---~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEHLTRY-CSAHD----PDHHITYADALC---IPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHHHHHH-CCTTC----SHHHHHHHHHTT---TTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhCCCccCCCHHHHHHHHHHHHHh-CCCCC----chHHHHHHHHHH---HhcCCHHHHHHHHHHHHcCCCC
Confidence 994 9999999999999999 885 4 889999999998 7 49999999999999998776
No 205
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.04 E-value=2.6e-08 Score=87.53 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=128.6
Q ss_pred ChhhHHHHHHHHHHh--CCCchHHHHHHHHHHHhcCC---------hhHHHHHHHHHHhh--CCChHHHHHHHHHHHHhc
Q 036703 1 FIDHGRNAWDRVVTL--SPRVDQLWNNYIRMEENLGN---------VAGARQIFERWMHW--MPDHEGWLSYIKFKLRYN 67 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~---------~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 67 (365)
++++|..+|++..+. .|+ ...|..+...+...+. .+.|..+|+++... .|+..+|..++..+.+.|
T Consensus 41 ~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g 119 (501)
T 4g26_A 41 DVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKD 119 (501)
T ss_dssp CHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 468899999999876 465 7788888887776543 67899999998864 577889999999999999
Q ss_pred cHHHHHHHHHHHHHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703 68 EVQRARHIFERLVQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET 145 (365)
Q Consensus 68 ~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (365)
+.++|..+|+++.+. .| +..+|..+...+.+.|+.++|.++|+++.+.+...+ ...|..+...+. +.|+.
T Consensus 120 ~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd----~~ty~~Li~~~~---~~g~~ 191 (501)
T 4g26_A 120 DPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE----EPELAALLKVSM---DTKNA 191 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHH---HTTCH
T ss_pred CHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHh---hCCCH
Confidence 999999999999875 46 888999999999999999999999999998755555 889999999999 99999
Q ss_pred HHHHHHHHHHhc
Q 036703 146 DRARCIYKFALD 157 (365)
Q Consensus 146 ~~A~~~~~~~l~ 157 (365)
++|.++|++..+
T Consensus 192 d~A~~ll~~Mr~ 203 (501)
T 4g26_A 192 DKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998866
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.04 E-value=6.9e-10 Score=74.91 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=39.1
Q ss_pred CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+|+ ..+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344 4555566666666666666666666666666655666666666666666666666666666555
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.03 E-value=6.4e-09 Score=90.67 Aligned_cols=128 Identities=11% Similarity=0.017 Sum_probs=108.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhh-----CCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHH
Q 036703 27 IRMEENLGNVAGARQIFERWMHW-----MPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSA 89 (365)
Q Consensus 27 ~~~~~~~g~~~~A~~~~~~al~~-----~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~ 89 (365)
+..+..+|++++|+..++++++. .|+ ..++..++.++..+|++++|..++++++.. +|+....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 44466899999999999999974 233 467888999999999999999999999974 3445567
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhhh---hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 90 WINFADFEMKMGEVDRARNVYECAVEIF---LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
+..+|.+|..+|++++|+.+|+++++.. .+.+|+....+...++..+. .++.+++|...|+++.+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~---e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM---ELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998762 35556888888889999999 99999999999998865
No 208
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.8e-10 Score=78.46 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh--hhHHHHHH
Q 036703 53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH--DEAEQLFV 130 (365)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~ 130 (365)
...|..+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|.+. .....++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-TSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCccHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999 87641 11256777
Q ss_pred HHHHHHHhccccchhHHHHHHHHH
Q 036703 131 AFAKFEEMGCNCKETDRARCIYKF 154 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~A~~~~~~ 154 (365)
.++.++. ..|+++.|+..+++
T Consensus 83 ~~~~~~~---~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQG---AVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHH---HHHCCCCCSSSSSS
T ss_pred HHHHHHH---HHHhHhhhHhHHHH
Confidence 8888888 77877777665544
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.91 E-value=1.5e-08 Score=83.40 Aligned_cols=118 Identities=8% Similarity=0.010 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhc---C-Ch----hHHHHHHHHH--HhhCCC-hHHHHHHHHHHHHhccHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENL---G-NV----AGARQIFERW--MHWMPD-HEGWLSYIKFKLRYNEVQ 70 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~---g-~~----~~A~~~~~~a--l~~~p~-~~~~~~~~~~~~~~~~~~ 70 (365)
+.+|+.+|+++++++|+++.+|..++.++... + .. ......++.+ +...|. +.++..++......|+++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d 294 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence 46899999999999999988888777666421 1 11 1111222222 134455 677888888888889999
Q ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 71 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
.|...+++++..+| +...|..+|.++...|++++|.+.|++|+.. .|..
T Consensus 295 ~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-~P~~ 343 (372)
T 3ly7_A 295 ESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL-RPGA 343 (372)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SCSH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCc
Confidence 99999999999998 6778889999999999999999999999999 8874
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.90 E-value=3.1e-08 Score=86.36 Aligned_cols=133 Identities=9% Similarity=-0.021 Sum_probs=104.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHhc-----CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc-cCCCcc
Q 036703 215 RLEERVGNQERVREVYERAIAN-----VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF-SFSPRM 288 (365)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~ 288 (365)
..+..+|++++|+.+++++++. -|+++.. ...+.+++..+ ..+|++++|+.++++++.... ..+...
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~------a~~~~nLa~~y-~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYV------LRLLSIASEVL-SYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHH------HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456789999999999999975 3444432 45778888888 699999999999999998721 111111
Q ss_pred hh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh-----Ccch---HHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703 289 EE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW-----SPEN---CYAWSKYTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 289 ~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
|+ ...+.++|.++...|++++|..+|++|+.+ .|++ .++...++..+..+|.+++|..+|.++.+.
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 677899999999999999999999999975 4554 456678888899999999999999888653
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.90 E-value=5.5e-09 Score=70.23 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=75.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCcchH-HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLS-AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135 (365)
Q Consensus 57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
+..+..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++. .|.+ ..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~---- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-NPDS----PALQAR---- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTS----THHHHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc----HHHHHH----
Confidence 45678888999999999999999999999999 9999999999999999999999999999 8887 555521
Q ss_pred HHhccccchhHHHHHHHHHHhccCCCc
Q 036703 136 EEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 136 ~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
+.+.++...|++++...|++
T Consensus 75 -------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -------HHHHHHHHHHCCTTHHHHCC
T ss_pred -------HHHHHHHHHHHHHhccCccc
Confidence 34566777777777665553
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.89 E-value=1.3e-07 Score=77.96 Aligned_cols=145 Identities=11% Similarity=0.068 Sum_probs=108.5
Q ss_pred HHHHHHhCCCchHHHHHHH--HHHHhcCC---hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH---hc-----cHHHHHH
Q 036703 9 WDRVVTLSPRVDQLWNNYI--RMEENLGN---VAGARQIFERWMHWMPD-HEGWLSYIKFKLR---YN-----EVQRARH 74 (365)
Q Consensus 9 ~~~~l~~~p~~~~~~~~~~--~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~---~~-----~~~~A~~ 74 (365)
.+++...-|.+..+|-.+. ..+...++ ..+|+.+|+++++.+|+ ..+|-.++.++.. .+ .......
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 3455666788888876543 44444444 47899999999999999 5555554444421 11 1112222
Q ss_pred HHHH--HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHH
Q 036703 75 IFER--LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIY 152 (365)
Q Consensus 75 ~~~~--~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 152 (365)
.++. ++...|.++.++..++..+...|++++|+..+++++.. .|+ ...|..+|.++. ..|++++|.+.|
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n~s-----~~a~~llG~~~~---~~G~~~eA~e~~ 333 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-EMS-----WLNYVLLGKVYE---MKGMNREAADAY 333 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCC-----HHHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCC-----HHHHHHHHHHHH---HCCCHHHHHHHH
Confidence 2222 23467889999999999888899999999999999999 753 778889999999 999999999999
Q ss_pred HHHhccCCCc
Q 036703 153 KFALDRIPKG 162 (365)
Q Consensus 153 ~~~l~~~p~~ 162 (365)
++|+...|..
T Consensus 334 ~~AlrL~P~~ 343 (372)
T 3ly7_A 334 LTAFNLRPGA 343 (372)
T ss_dssp HHHHHHSCSH
T ss_pred HHHHhcCCCc
Confidence 9999999986
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=6.9e-08 Score=69.20 Aligned_cols=109 Identities=8% Similarity=0.032 Sum_probs=96.4
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHH----hccHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR----YNEVQRARHIF 76 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~ 76 (365)
++++|+..|+++.+..+. .+. +|.++...+.+++|+..|+++.+. .++.++..++.++.. .+++++|...|
T Consensus 10 d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 468899999999988633 344 999999999999999999999986 347888999999988 78999999999
Q ss_pred HHHHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhh
Q 036703 77 ERLVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEI 116 (365)
Q Consensus 77 ~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~ 116 (365)
+++.+. .++.....++.+|.. .+++++|+..|+++.+.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999887 579999999999999 89999999999999987
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.82 E-value=5.4e-08 Score=64.02 Aligned_cols=70 Identities=9% Similarity=-0.038 Sum_probs=56.6
Q ss_pred CCCchHHHHHHHHHHHhcCC---hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703 16 SPRVDQLWNNYIRMEENLGN---VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY 85 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 85 (365)
+|+++.++..+|.++...++ .++|...++++++.+|+ +.++..+|..+...|++++|+..++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57788888888888865554 67888888888888888 778888888888888888888888888888885
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.78 E-value=4.8e-08 Score=64.28 Aligned_cols=71 Identities=15% Similarity=-0.016 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHhCC---CccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703 290 ERRIFKKYIEMELCLGN---IDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE 361 (365)
Q Consensus 290 ~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~ 361 (365)
+++++..+|.++...++ .++|..+++++++.+|+++.++..+|..+...|++++|+..++++++.+|. .|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 38899999999875544 799999999999999999999999999999999999999999999999995 543
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.76 E-value=1.7e-07 Score=67.18 Aligned_cols=112 Identities=8% Similarity=-0.047 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHH
Q 036703 221 GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM 300 (365)
Q Consensus 221 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 300 (365)
+++++|...|+++.+..+.. .. ++.++ ...+.+++|+..|+++.+. .++.....++.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~-----------a~--lg~~y-~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF-----------GC--LSLVS-NSQINKQKLFQYLSKACEL--------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-----------HH--HHHHT-CTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh-----------hh--HHHHH-HcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 46889999999999886443 22 67776 4667888999999999987 446778899999
Q ss_pred HHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhHHHHHHHHHhcCcC
Q 036703 301 ELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS----LDETERARAIFELAIAQPI 356 (365)
Q Consensus 301 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~ 356 (365)
+.. .+++++|..+|+++.+. .++..+..++.++.. .++.++|...|+++.+...
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 988 89999999999999987 578999999999999 8999999999999998753
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=2.8e-07 Score=65.57 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC---ChhHHHHHHHHHHhhC-CC--hHHHHHHHHHHHHhccHHHHHHHH
Q 036703 3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG---NVAGARQIFERWMHWM-PD--HEGWLSYIKFKLRYNEVQRARHIF 76 (365)
Q Consensus 3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p~--~~~~~~~~~~~~~~~~~~~A~~~~ 76 (365)
..++..|.+.+...|.+.++.+.||.++.+.+ ++++++..++..++.+ |+ .+.++.++-.+.+.|++++|+..+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45677788888777777888888888888877 5568888888888877 63 577788888888888888888888
Q ss_pred HHHHHhCCcchHHHHH
Q 036703 77 ERLVQCHPYNLSAWIN 92 (365)
Q Consensus 77 ~~~l~~~p~~~~~~~~ 92 (365)
+++++..|++..+...
T Consensus 95 ~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHCTTCHHHHHH
T ss_pred HHHHhcCCCCHHHHHH
Confidence 8888888877666543
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=6.3e-07 Score=63.74 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=74.4
Q ss_pred ccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhh-cCChhhHHHHHHHHHHHHHhcccc
Q 036703 67 NEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG---EVDRARNVYECAVEIFL-ADDHDEAEQLFVAFAKFEEMGCNC 142 (365)
Q Consensus 67 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 142 (365)
+....++..|.+.+..+|.+.++.+.+|.++.+.+ +.++++.+++..++. . |. ...+.++.+|..+. +.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~~p~---~~rd~lY~LAv~~~---kl 84 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-GSKE---EQRDYVFYLAVGNY---RL 84 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCHH---HHHHHHHHHHHHHH---HT
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcc---chHHHHHHHHHHHH---Hc
Confidence 35667788888888888888899999999998877 667899999998888 6 41 23778888888888 89
Q ss_pred chhHHHHHHHHHHhccCCCchh
Q 036703 143 KETDRARCIYKFALDRIPKGRA 164 (365)
Q Consensus 143 ~~~~~A~~~~~~~l~~~p~~~~ 164 (365)
|++++|+++++++++..|.+..
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999998753
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.53 E-value=4.1e-07 Score=78.04 Aligned_cols=91 Identities=9% Similarity=0.022 Sum_probs=78.8
Q ss_pred HhccHHHHHHHHHHHHHh-----CCc---chHHHHHHHHHHHhhcchHHHHHHHHHHHhhh---hcCChhhHHHHHHHHH
Q 036703 65 RYNEVQRARHIFERLVQC-----HPY---NLSAWINFADFEMKMGEVDRARNVYECAVEIF---LADDHDEAEQLFVAFA 133 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~ 133 (365)
..|++++|..+++++++. .|+ -..++..+|.+|..+|++++|+.++++++... .|.+|++....+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999999984 343 45668889999999999999999999998752 4666788899999999
Q ss_pred HHHHhccccchhHHHHHHHHHHhcc
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
.+|. .+|++++|+.+|++++++
T Consensus 390 ~~~~---~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYM---GLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHH---HTTCHHHHHHHHHHHHHH
T ss_pred HHHH---hccCHHHHHHHHHHHHHH
Confidence 9999 999999999999999874
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.42 E-value=7.1e-06 Score=70.53 Aligned_cols=110 Identities=10% Similarity=0.054 Sum_probs=86.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhhC-----CC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHHH
Q 036703 28 RMEENLGNVAGARQIFERWMHWM-----PD----HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSAW 90 (365)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~al~~~-----p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~ 90 (365)
.-+..+|++++|+..++++++.. |+ ..++..++.++..+|++++|+.++++++.. +|+-...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34557899999999999999753 33 457788999999999999999999999974 34445678
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhh---hcCChhhHHHHHHHHHHHHH
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIF---LADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~ 137 (365)
..+|.+|..+|++++|+.+|+++++.. .+.+|+....+...++....
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 899999999999999999999998862 24444555666665655543
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.41 E-value=1.2e-06 Score=75.25 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=76.0
Q ss_pred ccCChhHHHHHHHHHHhcccc-CCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh--------CcchHHHHHHHH
Q 036703 263 DAGDLERTRDVYRTLFIFYFS-FSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW--------SPENCYAWSKYT 332 (365)
Q Consensus 263 ~~~~~~~a~~~~~~a~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~ 332 (365)
..|++++|+.++++++..... .+.-.|+ ...+..++.+|...|++++|..++++++.. +|+-...++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 568999999999999987211 1111144 677889999999999999999999999976 344556788999
Q ss_pred HHHhhccchhHHHHHHHHHhcCc
Q 036703 333 ELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
.++..+|++++|..+|++|++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999998754
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.35 E-value=2.7e-06 Score=73.16 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=80.2
Q ss_pred HHHhccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh---hhcCChhhHHHHHHH
Q 036703 63 KLRYNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEI---FLADDHDEAEQLFVA 131 (365)
Q Consensus 63 ~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~ 131 (365)
+..+|++++|+..++++++. +|....++..++.+|..+|++++|+.++++++.. ..|.+|+.....+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44678999999999999974 3334567888999999999999999999999875 156667888999999
Q ss_pred HHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 132 FAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
+|.+|. .+|++++|+.+|++++++
T Consensus 377 La~~~~---~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQL---HQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH---hcCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999864
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.34 E-value=5.5e-06 Score=55.85 Aligned_cols=75 Identities=9% Similarity=-0.019 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhC-------CC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWM-------PD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI 91 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 91 (365)
+.-.+.+|..+...|++..|+..|+.|++.. +. ..++..++.++.+.|+++.|...++++++..|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4556788999999999999999999998753 12 567888899999999999999999999999998887766
Q ss_pred HHH
Q 036703 92 NFA 94 (365)
Q Consensus 92 ~~~ 94 (365)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.20 E-value=2e-05 Score=53.00 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQCH-------PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE 126 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 126 (365)
.-.+.+|..+...|++..|...|+++++.. +..+.++..+|.++.+.|+++.|+..++++++. .|.+ .
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-~P~~----~ 80 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-DPEH----Q 80 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----H
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCC----H
Confidence 345688999999999999999999999863 346789999999999999999999999999999 9988 7
Q ss_pred HHHHHHH
Q 036703 127 QLFVAFA 133 (365)
Q Consensus 127 ~~~~~~~ 133 (365)
.+..++.
T Consensus 81 ~~~~n~~ 87 (104)
T 2v5f_A 81 RANGNLK 87 (104)
T ss_dssp HHHHHHH
T ss_pred HHHhhHH
Confidence 7766665
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.06 E-value=0.00011 Score=50.28 Aligned_cols=88 Identities=11% Similarity=-0.007 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhH---HHHHHHHHHhhC-CC--hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703 4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAG---ARQIFERWMHWM-PD--HEGWLSYIKFKLRYNEVQRARHIFE 77 (365)
Q Consensus 4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~---A~~~~~~al~~~-p~--~~~~~~~~~~~~~~~~~~~A~~~~~ 77 (365)
.++..|.+.+...+.+.++-+.||..+.+..+... ++.+++..++.. |. ....+.++-.+.+.|+|++|+..++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555666666555556666777766666665544 666666666655 43 3455556666666777777777777
Q ss_pred HHHHhCCcchHHHH
Q 036703 78 RLVQCHPYNLSAWI 91 (365)
Q Consensus 78 ~~l~~~p~~~~~~~ 91 (365)
.+++..|++..+..
T Consensus 99 ~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 99 GLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHHhCCCCHHHHH
Confidence 77777776655543
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.04 E-value=0.00013 Score=49.83 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=76.5
Q ss_pred HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH---HHHHHHHHHhhhh-cCChhhHHHHHHHHHHHHHhc
Q 036703 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR---ARNVYECAVEIFL-ADDHDEAEQLFVAFAKFEEMG 139 (365)
Q Consensus 64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~---A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~ 139 (365)
........++..|.+.+..++.+..+-+.+|..+.+..+... ++.+++..++. . |. ......+.+|..+.
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~~p~---~~Rd~lY~LAvg~y-- 85 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKE---EQRDYVFYLAVGNY-- 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHH---HHHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcc---hHHHHHHHHHHHHH--
Confidence 344566778888888888777789999999999998775554 88888888877 5 31 24777888888888
Q ss_pred cccchhHHHHHHHHHHhccCCCchhHH
Q 036703 140 CNCKETDRARCIYKFALDRIPKGRAED 166 (365)
Q Consensus 140 ~~~~~~~~A~~~~~~~l~~~p~~~~~~ 166 (365)
+.|+|++|+..++.+++..|.+..+.
T Consensus 86 -klg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 86 -RLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp -HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -HhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999875433
No 227
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.82 E-value=0.0083 Score=50.42 Aligned_cols=180 Identities=9% Similarity=-0.007 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhcc---CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDR---IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
......+|..|. ..|+.++..+++...... .|......+...+++......+..+ .-..+...+++-
T Consensus 19 e~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~-------~~~~~~~~~~~~ 88 (394)
T 3txn_A 19 EQGILQQGELYK---QEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTG-------IEVQLCKDCIEW 88 (394)
T ss_dssp HHHHHHHHHHHH---HHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHH
Confidence 567888999999 999999999999876553 3444445666666666554443322 222333333332
Q ss_pred CCCCHHHH------HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703 203 NPMNYDTW------FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT 276 (365)
Q Consensus 203 ~p~~~~~~------~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 276 (365)
..+.-..| ..++.++...|++.+|.+++.+..+.+....+. ...+.++..-++++ ...+++.++...+.+
T Consensus 89 a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~---~~llev~lle~~~~-~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 89 AKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK---NLLVEVQLLESKTY-HALSNLPKARAALTS 164 (394)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT---HHHHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---hhHHHHHHHHHHHH-HHhccHHHHHHHHHH
Confidence 11222233 378999999999999999999988764331111 12356777777777 688999999999999
Q ss_pred HHhccccCCCcchh--HHHHHHHHHHHH-HhCCCccHHHHHHHHHhh
Q 036703 277 LFIFYFSFSPRMEE--RRIFKKYIEMEL-CLGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 277 a~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~ 320 (365)
+.........- |. ..+...-|.+++ ..++|..|...|-.+++.
T Consensus 165 a~~~~~ai~~~-p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 165 ARTTANAIYCP-PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCC-HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 98764222110 44 566777778888 899999999999998754
No 228
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.73 E-value=0.00024 Score=66.16 Aligned_cols=101 Identities=7% Similarity=-0.053 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh-----hCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCcchHHHHH
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMH-----WMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQC--HPYNLSAWIN 92 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~ 92 (365)
...+..+...+.+.|++++|..+|.++.+ ..|+..+|..++..+.+.|+.++|..+|+++.+. .| |..+|..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 34588999999999999999999977643 5788999999999999999999999999999874 56 8899999
Q ss_pred HHHHHHhhcch-HHHHHHHHHHHhhhhcCC
Q 036703 93 FADFEMKMGEV-DRARNVYECAVEIFLADD 121 (365)
Q Consensus 93 ~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~ 121 (365)
+...+.+.|+. ++|.++|+++.+.+...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD 235 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCC
Confidence 99999999985 789999999999844433
No 229
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0066 Score=45.12 Aligned_cols=140 Identities=14% Similarity=0.197 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHc---CCCC-HHHHHHHHHHHHHh---CCH---HHHH-HHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703 191 KMRLQYEDGVRK---NPMN-YDTWFDYIRLEERV---GNQ---ERVR-EVYERAIANVPPAEEKRYWQRYIYLWINYALY 259 (365)
Q Consensus 191 ~a~~~~~~~l~~---~p~~-~~~~~~~~~~~~~~---~~~---~~A~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 259 (365)
..+..|++.+.. ..++ .++|..++...... |.. ..-. .++++++....++..-+-=.+|+.+|+.|+.+
T Consensus 10 ~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~ 89 (202)
T 3esl_A 10 QTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINL 89 (202)
T ss_dssp HHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh
Confidence 566777777765 3334 47899888764322 332 2344 78999998755443222223578899999987
Q ss_pred HhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc-hHHHHHHHHHHHh
Q 036703 260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE-NCYAWSKYTELEK 336 (365)
Q Consensus 260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 336 (365)
. ..+....+..+|.-+....... .-..+|..+|..+...|++.+|.++|+.+++..-. ...+...+..+..
T Consensus 90 ~--~~~~~~~p~~if~~L~~~~IG~----~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~ 161 (202)
T 3esl_A 90 F--LSNNFHESENTFKYMFNKGIGT----KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYED 161 (202)
T ss_dssp H--STTCHHHHHHHHHHHHHHTSST----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHH
T ss_pred h--cccccCCHHHHHHHHHHCCCcH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 4 4566778999998887764321 22778999999999999999999999999987532 2233334444443
No 230
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.40 E-value=0.0017 Score=60.72 Aligned_cols=97 Identities=11% Similarity=-0.003 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHH
Q 036703 54 EGWLSYIKFKLRYNEVQRARHIFERLVQ-----CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQL 128 (365)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 128 (365)
..+..+++.+.+.|+.++|..+|.++.. ..| +..+|..+...+.+.|+.++|.++|+++.+.+...+ ...
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD----vvT 202 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD----LLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc----HHH
Confidence 4688999999999999999999977543 356 899999999999999999999999999998866666 888
Q ss_pred HHHHHHHHHhccccchh-HHHHHHHHHHhcc
Q 036703 129 FVAFAKFEEMGCNCKET-DRARCIYKFALDR 158 (365)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~ 158 (365)
|..+...+. +.|+. ++|.++|+++.+.
T Consensus 203 YntLI~glc---K~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 203 YAAALQCMG---RQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHH---HHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---hCCCcHHHHHHHHHHHHHc
Confidence 888888888 88874 7899999988764
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.37 E-value=0.0052 Score=42.17 Aligned_cols=89 Identities=7% Similarity=-0.077 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703 69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMG---EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET 145 (365)
Q Consensus 69 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (365)
....++.|.+=+.-.| ++.+-+.+|-.+.+.. +..+++.+++..++. .|.. ....++.+|..+. +.|++
T Consensus 23 L~~l~~qy~~E~~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~---~Rd~LYyLAvg~y---klgdY 94 (134)
T 3o48_A 23 LEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESR---RRECLYYLTIGCY---KLGEY 94 (134)
T ss_dssp HHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGG---HHHHHHHHHHHHH---HHTCH
T ss_pred HHHHHHHHHHHhCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Ccch---hHHHHHHHHHHHH---HhhhH
Confidence 3344444444223334 6777888887777755 445788888888877 6532 4667777787788 88888
Q ss_pred HHHHHHHHHHhccCCCchhH
Q 036703 146 DRARCIYKFALDRIPKGRAE 165 (365)
Q Consensus 146 ~~A~~~~~~~l~~~p~~~~~ 165 (365)
++|+++.+.+++..|.+..+
T Consensus 95 ~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 95 SMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHhhCCCCHHH
Confidence 88888888888888887543
No 232
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.36 E-value=0.0055 Score=43.40 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc--cCChhHHHHHHHHHHhccccCCCcc--hh-HHHHHHH
Q 036703 223 QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD--AGDLERTRDVYRTLFIFYFSFSPRM--EE-RRIFKKY 297 (365)
Q Consensus 223 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~--~~-~~~~~~~ 297 (365)
...++..|+..+.....++. +.+|..|..+.+.. .|. ..-..+++++++...+...-- |. ..+|..+
T Consensus 6 ~~~~~~~fE~~i~~y~gdDP-------L~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~y 77 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDP-------LGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKF 77 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCH-------HHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 45577788888887433322 66899998886421 132 345678888887743221110 22 5667777
Q ss_pred HHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 298 IEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 298 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
+++ .+++..+|..+... .-....+|..+|.++...|++.+|..+|+.+++..
T Consensus 78 a~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 78 AEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 654 46699999998765 45688999999999999999999999999999875
No 233
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.36 E-value=0.0032 Score=45.13 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCcch---------HHHHHHHHHHHhhcchHHHHHHHHHHHhhh--hcCC---
Q 036703 56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNL---------SAWINFADFEMKMGEVDRARNVYECAVEIF--LADD--- 121 (365)
Q Consensus 56 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~--- 121 (365)
....++.....|.++.|+.+...++....+++ .+...+|+.+...|++.+|...|+++++.. .+..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34445556667777777777776665433222 256677777777777777777777776541 0110
Q ss_pred ---------------hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703 122 ---------------HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174 (365)
Q Consensus 122 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 174 (365)
.....++-+..+.++. ..+++++|+.+++..-.. .....+-..++.+
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~---~l~~~~~Ai~~Le~Ip~k---~Rt~kvnm~LakL 164 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYT---VLKQDKDAIAILDGIPSR---QRTPKINMLLANL 164 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHH---HTTCHHHHHHHHHTSCGG---GCCHHHHHHHHHH
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHH---HHCCHHHHHHHHhcCCch---hcCHHHHHHHHHH
Confidence 0011367788999999 999999999998764221 1124455555544
No 234
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.34 E-value=0.0032 Score=45.14 Aligned_cols=109 Identities=9% Similarity=0.038 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhh---CCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CC--
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHW---MPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQC------HP-- 84 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p-- 84 (365)
++.-+.-....|.++.|+-+...++.. +|+ ..+...+|+.+...++|.+|...|+++++. .|
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 445566677788888888877776643 333 235677788888888888888888887652 11
Q ss_pred -----------------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703 85 -----------------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE 137 (365)
Q Consensus 85 -----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
.+.++-+.++.|+.+.|++++|+..++.+-.. ..++.+-..+|++|.
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k------~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR------QRTPKINMLLANLYK 166 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG------GCCHHHHHHHHHHCC
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch------hcCHHHHHHHHHHhc
Confidence 12368889999999999999999998765333 223778888887653
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0045 Score=56.58 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=89.5
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHhhCCChHHHHHHH--HHHHHhc-cHHHHHHHHHHHHHh--------C---------
Q 036703 25 NYIRMEENLGN-VAGARQIFERWMHWMPDHEGWLSYI--KFKLRYN-EVQRARHIFERLVQC--------H--------- 83 (365)
Q Consensus 25 ~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~-~~~~A~~~~~~~l~~--------~--------- 83 (365)
.+..+....|+ ++.|+..|++....+|........+ .+....+ +--+|.+++.+.++. .
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444445566 5789999999999999844433322 2222222 334577777776642 1
Q ss_pred -CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703 84 -PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA 155 (365)
Q Consensus 84 -p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 155 (365)
|....+...-++++...|+++-|+++-++++.. .|.+ ...|..++.+|. ..|+++.|+-.+..+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPse----F~tW~~La~vYi---~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDS----FESWYNLARCHI---KKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSC----HHHHHHHHHHHH---HTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-Cchh----hHHHHHHHHHHH---HhccHHHHHHHHhcC
Confidence 112335555678888999999999999999999 9999 999999999999 999999999888765
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.29 E-value=0.0077 Score=41.92 Aligned_cols=78 Identities=6% Similarity=-0.046 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 86 NLSAWINFADFEMKMG---EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 86 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
++.+-+.+|-.+.+.. +..+++.+++..++. .|.. .....+.+|..+. +.|+|++|+++.+.+++..|.+
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~---~RdcLYyLAvg~y---kl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESR---RRECLYYLTIGCY---KLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCST---HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Cccc---hhHHHHHHHHHHH---HhhhHHHHHHHHHHHHhcCCCc
Confidence 7788888888887765 445788888888877 6643 3666777777788 8888999999888888888887
Q ss_pred hhHHHHHH
Q 036703 163 RAEDLYRK 170 (365)
Q Consensus 163 ~~~~~~~~ 170 (365)
..+.-...
T Consensus 111 ~QA~~Lk~ 118 (144)
T 1y8m_A 111 KQVGALKS 118 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54433333
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0054 Score=56.07 Aligned_cols=129 Identities=8% Similarity=-0.022 Sum_probs=88.4
Q ss_pred HHHHHhCC-HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc--------ccCC
Q 036703 215 RLEERVGN-QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY--------FSFS 285 (365)
Q Consensus 215 ~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~ 285 (365)
.+....|+ .+.|+.++++..+..|.... .+...+....+....+--+|+.++.++++.. +...
T Consensus 256 ~~~~~t~~~~~~a~~~le~L~~~~p~~~~--------~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 256 SFIAITPSLVDFTIDYLKGLTKKDPIHDI--------YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHTCGGGHHHHHHHHHHHHHHCGGGHH--------HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHcccccHHHHHHHHHHHHHhhCCchhH--------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 33334555 57899999999999887531 1222222222222234456777777766421 0000
Q ss_pred ---Ccch-hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHH
Q 036703 286 ---PRME-ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351 (365)
Q Consensus 286 ---~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 351 (365)
...| ...+...-++++...|+++-|.++-++|+...|.....|..++.+|...|+++.|.-.+..+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0001 13456666888889999999999999999999999999999999999999999998776655
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.25 E-value=0.0076 Score=41.38 Aligned_cols=70 Identities=14% Similarity=-0.022 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhcCCh---hHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703 20 DQLWNNYIRMEENLGNV---AGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA 89 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~---~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 89 (365)
+.+-+.+|..+.+..+. ..++.+++..++..|. .+.+..++-.+.+.|++++|+...+.+++..|++..+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 44555555555544432 2455555555555553 3445555555555555555555555555555555443
No 239
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.25 E-value=0.011 Score=41.89 Aligned_cols=34 Identities=0% Similarity=0.132 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703 145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY 178 (365)
Q Consensus 145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 178 (365)
...++..|+..|.....++...+|..|+......
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~ 39 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEEN 39 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 4456677888888766666688999999877654
No 240
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0096 Score=44.27 Aligned_cols=124 Identities=12% Similarity=0.223 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhc---CCCchhhhHHHHhHHHHHHHHHHHhhc--cCCh---hHHH-HHHHHHHhccccCCCcc--hh-
Q 036703 223 QERVREVYERAIAN---VPPAEEKRYWQRYIYLWINYALYKEVD--AGDL---ERTR-DVYRTLFIFYFSFSPRM--EE- 290 (365)
Q Consensus 223 ~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~a~-~~~~~a~~~~~~~~~~~--~~- 290 (365)
....+..|++.+.. ..++| +.+|..|..|.+.. .|.. ..-. .+++++++...+...-- |.
T Consensus 8 l~~~r~~fE~~l~~~l~~~dDP--------L~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RY 79 (202)
T 3esl_A 8 LNQTKIAYEQRLLNDLEDMDDP--------LDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRF 79 (202)
T ss_dssp HHHHHHHHHHHHHHTGGGCSCH--------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHH
T ss_pred HHHHHHHHHHHHHhccccCCCc--------hHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHH
Confidence 45567778887776 34444 56888888876411 1222 1234 68889888643321110 33
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
..+|..++++. ..++..++..+|..+... .-....+|..+|.++...|++.+|..+|+.+++..
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 57788888765 234466899999988765 45688999999999999999999999999999876
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.12 E-value=0.016 Score=40.36 Aligned_cols=69 Identities=14% Similarity=-0.022 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhcCCh---hHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH
Q 036703 20 DQLWNNYIRMEENLGNV---AGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS 88 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~---~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 88 (365)
.++-+.||.++.+..+. .+++.+++..++..|. .+..+.++-.+.+.|+|++|+.+.+.+++..|++..
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 44444444444444322 2344455554444443 233344444444455555555555555555554433
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.08 E-value=0.1 Score=43.84 Aligned_cols=171 Identities=8% Similarity=-0.038 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchHHH--
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLR-YNEVQRARHIFERLVQCHPYNLSAW-- 90 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~-- 90 (365)
..+...+|.++...|+.++..+++.......+. ..+-..+.+.... .+..+.-.++...+++-....-..|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999988877654443 2333444444433 2445556666666666433333334
Q ss_pred ----HHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc-----C
Q 036703 91 ----INFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR-----I 159 (365)
Q Consensus 91 ----~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~ 159 (365)
..+|.+|...|++.+|.+++.+..+. .... .....+++..-.+++. ..+++.++...+.++... .
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~-~~~~dd~~~llev~lle~~~~~---~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRE-LKKLDDKNLLVEVQLLESKTYH---ALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSSCTHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHHHHH---HhccHHHHHHHHHHHHhhhccCCC
Confidence 37899999999999999999999887 5441 2334566777778888 999999999999888653 2
Q ss_pred CCchhHHHHHHHHHHHH-HcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703 160 PKGRAEDLYRKFLAFEK-QYGDREGIEDAIAGKMRLQYEDGVRK 202 (365)
Q Consensus 160 p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~ 202 (365)
|+.....+...-+.++. ..+++. .|...|-.++..
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk--------~A~~~F~eaf~~ 210 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFK--------TAFSYFYEAFEG 210 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHH--------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHH--------HHHHHHHHHHhc
Confidence 22223445555566676 677765 466666555543
No 243
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.95 E-value=0.016 Score=41.66 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=77.3
Q ss_pred HHHHHHHhcC-CCchhhhHHHHhHHHHHHHHHHHhhc--cCCh-hHHHHHHHHHHhccccCCCcc--hh-HHHHHHHHHH
Q 036703 228 EVYERAIANV-PPAEEKRYWQRYIYLWINYALYKEVD--AGDL-ERTRDVYRTLFIFYFSFSPRM--EE-RRIFKKYIEM 300 (365)
Q Consensus 228 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~a~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~~~ 300 (365)
..|+..+... .++| +.+|..|..+.+-. .|.. ..-..+++++++...+...-- |. ..+|..++++
T Consensus 4 ~~fE~~i~~~~gdDP--------L~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~ 75 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDP--------LDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRL 75 (164)
T ss_dssp HHHHHHCCCCCSSCT--------HHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCC--------hHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh
Confidence 3466666543 2333 56888888886421 1222 234668888887743322111 22 5677777765
Q ss_pred HHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 301 ELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 301 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
. +++..+|..+... .-..+.+|..+|.++...|++.+|.++|+.+++..
T Consensus 76 ~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 76 C------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp C------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred c------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2 5688899888765 45688999999999999999999999999999876
No 244
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.91 E-value=0.024 Score=42.91 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhc--CCCchhhhHHHHhHHHHHHHHHHHhhc--cCC--hhHHHHHHHHHHhccccCCCcc--hh-HHH
Q 036703 223 QERVREVYERAIAN--VPPAEEKRYWQRYIYLWINYALYKEVD--AGD--LERTRDVYRTLFIFYFSFSPRM--EE-RRI 293 (365)
Q Consensus 223 ~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~a~~~~~~a~~~~~~~~~~~--~~-~~~ 293 (365)
....+..|+..+.. ..++| +.+|..|..+.+-. .|. -..-..+++++++...+...-- |. ..+
T Consensus 51 l~~~r~~fE~~i~~~~~~dDP--------L~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLkl 122 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDP--------LQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRI 122 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCT--------HHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCC--------hHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHH
Confidence 34566677777765 23444 56888888886422 122 2235678888888743332111 22 566
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 294 FKKYIEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 294 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
|..|+++ .+++..+|..+... .-....+|..+|.++...|++.+|..+|+.+++..
T Consensus 123 Wl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 123 WMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 7777763 46888999988765 45688999999999999999999999999998765
No 245
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.87 E-value=0.016 Score=41.71 Aligned_cols=113 Identities=12% Similarity=0.209 Sum_probs=58.3
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHhC
Q 036703 151 IYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM---------NYDTWFDYIRLEERVG 221 (365)
Q Consensus 151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~---------~~~~~~~~~~~~~~~~ 221 (365)
.|+..|.....++...+|..|+.+....-...... ..-..+++++++...+ ...+|..++.+. +
T Consensus 5 ~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~----s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~ 77 (164)
T 2wvi_A 5 AFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKE----SNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N 77 (164)
T ss_dssp HHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S
T ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCcc----chHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C
Confidence 46666665555555789999998776532111000 0123355555554322 234566555542 2
Q ss_pred CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703 222 NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY 281 (365)
Q Consensus 222 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 281 (365)
+ +..+|..+....-... ...+|..+|.++| ..|++.+|.++|+.+++..
T Consensus 78 ~---p~~if~~L~~~~IG~~-------~AlfY~~wA~~lE-~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 78 E---PLDMYSYLHNQGIGVS-------LAQFYISWAEEYE-ARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp C---HHHHHHHHHHTTSSTT-------BHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTT
T ss_pred C---HHHHHHHHHHCCcchh-------hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcC
Confidence 2 4445555444422211 1236666666665 5666666666666666653
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.063 Score=39.23 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=30.3
Q ss_pred HHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703 30 EENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERL 79 (365)
Q Consensus 30 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 79 (365)
....|+++.|.++.+.. .+...|..+++.....|+++-|..+|.++
T Consensus 15 AL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 35567777777666544 23567777777777777777777777653
No 247
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.62 E-value=0.052 Score=41.11 Aligned_cols=121 Identities=17% Similarity=0.308 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHHHHHHh---CC--HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhh
Q 036703 191 KMRLQYEDGVRK---NPMNYDTWFDYIRLEERV---GN--QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262 (365)
Q Consensus 191 ~a~~~~~~~l~~---~p~~~~~~~~~~~~~~~~---~~--~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 262 (365)
..+..|+..+.. ..+-.+.|..++...... |. -..-..++++++....++..-+-=.+|+.+|+.|+.+
T Consensus 53 ~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~--- 129 (223)
T 4aez_C 53 KERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY--- 129 (223)
T ss_dssp HHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---
Confidence 456677777753 234568999999875543 32 2346789999998876654322223578899998854
Q ss_pred ccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc
Q 036703 263 DAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP 322 (365)
Q Consensus 263 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 322 (365)
.+....+|.-+....... .-..+|..++.++...|++.+|.++|+.+++..-
T Consensus 130 ----~~~p~~if~~L~~~~IG~----~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 130 ----IDEPVELFSFLAHHHIGQ----ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp ----CSCHHHHHHHHHHTTCST----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred ----cCCHHHHHHHHHHCCcch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 146667887777654221 2277899999999999999999999999998753
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.085 Score=38.54 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=26.3
Q ss_pred HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703 64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV 114 (365)
Q Consensus 64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 114 (365)
...|+++.|.++.+.+ ++...|..+|+.....|+++-|..+|.++-
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3455666665554433 345566666666666666666666665543
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.44 E-value=0.05 Score=42.55 Aligned_cols=110 Identities=10% Similarity=0.072 Sum_probs=78.1
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh----HHHHHHHHHHHHhccHHHHHHHH
Q 036703 1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH----EGWLSYIKFKLRYNEVQRARHIF 76 (365)
Q Consensus 1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~A~~~~ 76 (365)
+++.|++.....++.+|.+......+..+++-.|+++.|.+-++.+.+++|+. ..+..++.++. .=
T Consensus 12 ~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~----------~R 81 (273)
T 1zbp_A 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ----------AR 81 (273)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----------HH
T ss_pred CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH----------HH
Confidence 35788999999999999999999999999999999999999999999999982 23333333322 11
Q ss_pred HHHHH-----hCCcchHHHHHH---HHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 77 ERLVQ-----CHPYNLSAWINF---ADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 77 ~~~l~-----~~p~~~~~~~~~---~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
.+.+. ..+..+..|... +......|+.++|..+-.++.+. -|..
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~-ap~~ 133 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL-RQEK 133 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCC
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-Cccc
Confidence 12222 122233344433 33444579999999999999887 5543
No 250
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.16 E-value=0.33 Score=45.48 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcch
Q 036703 24 NNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV 103 (365)
Q Consensus 24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 103 (365)
...+.++...|..+.|.+..+ ++. .-..+....|+++.|.++.+ ..+++..|..+|..+.+.|++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~-------~~~---~~f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP-------DQD---QKFELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-------CHH---HHHHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCChHHheecCC-------Ccc---hheehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCH
Confidence 555566666676666655442 211 11334566788888887753 345789999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 036703 104 DRARNVYECAVEI 116 (365)
Q Consensus 104 ~~A~~~~~~a~~~ 116 (365)
+.|.++|.++-..
T Consensus 698 ~~A~~~y~~~~d~ 710 (814)
T 3mkq_A 698 KLAIEAFTNAHDL 710 (814)
T ss_dssp HHHHHHHHHHTCH
T ss_pred HHHHHHHHHccCh
Confidence 9999999987443
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.069 Score=45.87 Aligned_cols=100 Identities=10% Similarity=0.113 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--cchH----H
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP--YNLS----A 89 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~----~ 89 (365)
..++..+|.++.+.|++++|.+.|.++.....+ ...+...+.++...+|+..+...+.++..... .++. +
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 456889999999999999999999999876544 57888999999999999999999999876422 1222 3
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703 90 WINFADFEMKMGEVDRARNVYECAVEIFLAD 120 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 120 (365)
....|.++...+++..|-..|-.+... +..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t-~~~ 240 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT-FTS 240 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH-SCC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc-CCc
Confidence 344466667789999999999888776 543
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.79 E-value=0.22 Score=42.09 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=70.3
Q ss_pred HhcCChhHHHHHHHHHHhhCCC---h--------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703 31 ENLGNVAGARQIFERWMHWMPD---H--------------------EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL 87 (365)
Q Consensus 31 ~~~g~~~~A~~~~~~al~~~p~---~--------------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 87 (365)
...|+.+.|...+.+|+.+... . .+...++..+...|++.+|...+.+++..+|-+.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 3458889999999999986421 0 1122345566678999999999999999999999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 88 SAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
.+|..+...+...|+..+|+..|++..+.
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998776
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.63 E-value=0.19 Score=39.29 Aligned_cols=122 Identities=9% Similarity=0.065 Sum_probs=75.3
Q ss_pred HHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHH
Q 036703 29 MEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRAR 107 (365)
Q Consensus 29 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~ 107 (365)
-..+.|+++.|+...+..++.+|. ...-..+..++.-.|++++|..-++.+.+.+|+....-..+... =+-+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l----I~aE~~R 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL----VKAAQAR 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH----HHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH----HHHHHHH
Confidence 456778899999999999999998 67777888888888999999999999999998554332222111 1111111
Q ss_pred HHHHHHHhhh-hcCChhhHHHHHHH---HHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 108 NVYECAVEIF-LADDHDEAEQLFVA---FAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 108 ~~~~~a~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
.-+=..-..+ .+.. +..|.. -+.... ..|+.++|..+-.++++..|.
T Consensus 82 ~~vfaG~~~P~~~g~----~~~w~~~ll~Al~~~---~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 82 KDFAQGAATAKVLGE----NEELTKSLVSFNLSM---VSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHTTSCCCEECCCS----CHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHcCCCCCCCCCC----CHHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHhcCcc
Confidence 1111100000 1111 222332 223334 578999999998888876654
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.078 Score=45.54 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703 207 YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286 (365)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 286 (365)
..++..+|.++.+.|++++|.+.|.++...+...... +.+++....+. ...+++..+...+.++.........
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k------id~~l~~irl~-l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK------IDVMLTIARLG-FFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH------HHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH------HHHHHHHHHHH-HHhccHHHHHHHHHHHHHhhhcCCC
Confidence 3578899999999999999999999998876554332 66777777776 6889999999999999766322211
Q ss_pred cchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703 287 RMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWS 321 (365)
Q Consensus 287 ~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 321 (365)
|. ..+....|.+++..++|..|...|-.++...
T Consensus 204 --~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 204 --WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp --THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 22 4455555666778899999999998887653
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=1.2 Score=38.37 Aligned_cols=200 Identities=8% Similarity=0.063 Sum_probs=116.1
Q ss_pred cchHHHHHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch--hHHHHHHHHHHHH
Q 036703 101 GEVDRARNVYECAVEIFL--ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR--AEDLYRKFLAFEK 176 (365)
Q Consensus 101 ~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~~ 176 (365)
|+++.|++.+....+. . ..+......+...+..++. ..|+++...+.+.-..+...... ...+......+..
T Consensus 30 ~~~~~a~e~ll~lEK~-~r~~~d~~s~~r~l~~iv~l~~---~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKK-TRQASDLASSKEVLAKIVDLLA---SRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHH-HSSSCSTTTCHHHHHHHHHHHH---HHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-hhhccchhhHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 5666666665444332 1 1111223666777777777 77888777666654444332221 1112222222222
Q ss_pred HcCCchhhhHHHHHHHHHHHHHHHH----cCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCchhhh
Q 036703 177 QYGDREGIEDAIAGKMRLQYEDGVR----KNPM-------NYDTWFDYIRLEERVGNQERVREVYERAIAN-VPPAEEKR 244 (365)
Q Consensus 177 ~~~~~~~~~~~~~~~a~~~~~~~l~----~~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~ 244 (365)
.....+ .......+. ...+ ...+...++.++...|++.+|..++...... .......
T Consensus 106 ~~~~~d----------~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~- 174 (445)
T 4b4t_P 106 SSKSLD----------LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS- 174 (445)
T ss_dssp HHCTTH----------HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH-
T ss_pred cCCchh----------HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH-
Confidence 222211 011111111 1111 1245678899999999999999999987643 2221111
Q ss_pred HHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703 245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 320 (365)
..+.+++...+++ ...+++.+|..++.++.......... |. ..++...|.++...++|.+|-..|..++..
T Consensus 175 ---~kve~~l~q~rl~-l~~~d~~~a~~~~~ki~~~~~~~~~~-~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 175 ---EKIQFILEQMELS-ILKGDYSQATVLSRKILKKTFKNPKY-ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp ---HHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhhcccCCc-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 1256777777777 68999999999999875431111110 33 567778888888999999999999988764
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.16 E-value=1.7 Score=39.08 Aligned_cols=291 Identities=9% Similarity=0.029 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703 21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF 96 (365)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 96 (365)
..|..+..+-...++... .-....+..+|+ + .+-..+.....+.++......++.. .|.+...-+.++..
T Consensus 38 ~~yl~y~~l~~~l~~~~~--~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A 111 (618)
T 1qsa_A 38 YPYLEYRQITDDLMNQPA--VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYA 111 (618)
T ss_dssp HHHHHHHHHHHTGGGCCH--HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCH--HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHH
Confidence 334455444444432111 134444666676 2 2333344444456666666554443 37778888888888
Q ss_pred HHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH--------------HHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703 97 EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV--------------AFAKFEEMGCNCKETDRARCIYKFALDRIPKG 162 (365)
Q Consensus 97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 162 (365)
....|+..+|......+-.. ....+.....++. ....... ..|+...|..+... .|..
T Consensus 112 ~~~~G~~~~a~~~~~~lW~~-~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al---~~~~~~~a~~l~~~----l~~~ 183 (618)
T 1qsa_A 112 KWNTGQSEEAWQGAKELWLT-GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAM---KAGNTGLVTVLAGQ----MPAD 183 (618)
T ss_dssp HHHTTCHHHHHHHHHHHHSC-SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHH---HTTCHHHHHHHHHT----CCGG
T ss_pred HHHcCChhHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHh----CCHH
Confidence 88888877777666665544 3222011111111 1112222 34444444443222 2221
Q ss_pred hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703 163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 241 (365)
. ..+...+..+... +.. ..... . ...|... .-...++.......+.+.|...+.......+.+.
T Consensus 184 ~-~~~a~~~~al~~~---p~~--------~~~~~-~--~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~ 248 (618)
T 1qsa_A 184 Y-QTIASAIISLANN---PNT--------VLTFA-R--TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNE 248 (618)
T ss_dssp G-HHHHHHHHHHHHC---GGG--------HHHHH-H--HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCH
T ss_pred H-HHHHHHHHHHHhC---hHh--------HHHHH-h--ccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCH
Confidence 1 1122222222211 110 00000 0 0111111 1112222222344578889988888765443333
Q ss_pred hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS 321 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 321 (365)
... ..++..++... ...+...++...+.+..... ++..+..-.+....+.|+.+.|...|+++-...
T Consensus 249 ~~~-----~~~~~~ia~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~ 315 (618)
T 1qsa_A 249 DQI-----QELRDIVAWRL-MGNDVTDEQAKWRDDAIMRS-------QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA 315 (618)
T ss_dssp HHH-----HHHHHHHHHTS-CSTTCCHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG
T ss_pred HHH-----HHHHHHHHHHH-HHcCCChHHHHHHHhccccC-------CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc
Confidence 211 12333333222 23342556666666654432 222222333344557799999999998775543
Q ss_pred cchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703 322 PENCYAWSKYTELEKSLDETERARAIFELAIA 353 (365)
Q Consensus 322 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 353 (365)
++.....+-.+..+...|+.++|...|+++.+
T Consensus 316 ~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 316 KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44556666777788889999999999988875
No 257
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.97 E-value=0.67 Score=43.36 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=52.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--------hCCcchHHHHHHHHHHHh
Q 036703 28 RMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQ--------CHPYNLSAWINFADFEMK 99 (365)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~~~~~~~~~~~~ 99 (365)
.+....|+++.|.++.+. -.+...|..+|..+.+.|+++.|..+|.++-. ....+...+..++.....
T Consensus 660 ~~~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 445678999999887533 24478999999999999999999999998522 112233344444444444
Q ss_pred hcchHHHHHHH
Q 036703 100 MGEVDRARNVY 110 (365)
Q Consensus 100 ~~~~~~A~~~~ 110 (365)
.|++..|..+|
T Consensus 736 ~~~~~~A~~~~ 746 (814)
T 3mkq_A 736 TGKFNLAFNAY 746 (814)
T ss_dssp TTCHHHHHHHH
T ss_pred cCchHHHHHHH
Confidence 44444444443
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.87 E-value=0.78 Score=38.72 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703 296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI 352 (365)
Q Consensus 296 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 352 (365)
.++..+...|++.+|...+.+++..+|-+..+|..+..++...|+..+|...|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666666553
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.69 E-value=1.2 Score=43.72 Aligned_cols=102 Identities=8% Similarity=-0.149 Sum_probs=75.7
Q ss_pred HHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--------------------CCC----hHHHHHHHHHHHHhc
Q 036703 12 VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW--------------------MPD----HEGWLSYIKFKLRYN 67 (365)
Q Consensus 12 ~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------~p~----~~~~~~~~~~~~~~~ 67 (365)
.+...|.++..-+.+|.++...|++++|..+|+++-.- .+. ...+...+.+..+.|
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 34456777777788999999999999999999887321 011 234556667777888
Q ss_pred cHHHHHHHHHHHHHhCCcc-h----HHHHHHHHHHHhhcchHHHHHHHHHH
Q 036703 68 EVQRARHIFERLVQCHPYN-L----SAWINFADFEMKMGEVDRARNVYECA 113 (365)
Q Consensus 68 ~~~~A~~~~~~~l~~~p~~-~----~~~~~~~~~~~~~~~~~~A~~~~~~a 113 (365)
-++.+.++-+.|++..+.+ . .+|..+-......|++++|-..+...
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9999999999999865432 2 26788888888999999987766543
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.98 E-value=2.7 Score=36.17 Aligned_cols=191 Identities=10% Similarity=0.019 Sum_probs=116.3
Q ss_pred cCChhHHHHHHHHHHh---hCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH----HHhhc
Q 036703 33 LGNVAGARQIFERWMH---WMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF----EMKMG 101 (365)
Q Consensus 33 ~g~~~~A~~~~~~al~---~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~----~~~~~ 101 (365)
.|+++.|+..+...-+ ...+ ..+......++...|+++...+.+.-...........-..+.+. .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3667777776643332 1222 45667778888899999888777765554444333332222222 11222
Q ss_pred chHHHHHHHHHHHhh---hhcCC---hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc----CCCchhHHHHHHH
Q 036703 102 EVDRARNVYECAVEI---FLADD---HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR----IPKGRAEDLYRKF 171 (365)
Q Consensus 102 ~~~~A~~~~~~a~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~ 171 (365)
..+. ......+.. +.... ......+...++.++. ..|++.+|.+++...... .+......++..-
T Consensus 109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e---~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKK---EEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2221 111222221 01100 1124567788999999 999999999999887642 2222345677777
Q ss_pred HHHHHHcCCchhhhHHHHHHHHHHHHHHHH---cCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVR---KNPMNY----DTWFDYIRLEERVGNQERVREVYERAIAN 236 (365)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~---~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 236 (365)
+.++...+++. +|...+.++.. ..+.++ ..+...|.++...++|.+|-..|..+...
T Consensus 184 ~rl~l~~~d~~--------~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 184 MELSILKGDYS--------QATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHTCHH--------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHH--------HHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88888888865 57677766532 233343 34566788888999999999999998875
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.72 E-value=0.6 Score=40.71 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
....+|++..-......|...|.+|....|++...+..+|-+....|+.-+|.-.|-+++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 44556666666666667777777777777777777777777766666666666666666655
No 262
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.58 E-value=0.36 Score=33.30 Aligned_cols=63 Identities=10% Similarity=0.089 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703 293 IFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP 355 (365)
Q Consensus 293 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 355 (365)
+.....+.....|+-++-.+++...+...|-++.+...++..|.+.|+..+|.+++.+|.+..
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444555677888888888888766666689999999999999999999999999998764
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.32 E-value=0.88 Score=39.67 Aligned_cols=77 Identities=8% Similarity=-0.008 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
...+|++....+....|...|.+|....|+ ...+..+|-+....|+.-.|.-.|-+++......+.+..++..++.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 445566666666667777777777777777 56777777777777777777777777766544456666665555443
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.86 E-value=4.5 Score=35.28 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCCchHHHHHHHHHHHhcCChhHH----------HHHHHHHHh-----hCCC--hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGA----------RQIFERWMH-----WMPD--HEGWLSYIKFKLRYNEVQRARHIFER 78 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A----------~~~~~~al~-----~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~ 78 (365)
++-+..+|+.++.++...|+.... +..+-.+++ .+++ ..+|..+.+.|...+.+++|..+..+
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 455678899888888888876542 333333332 3444 56888899999999999999999999
Q ss_pred HHHhCCcc-------hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703 79 LVQCHPYN-------LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121 (365)
Q Consensus 79 ~l~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 121 (365)
+. .|.+ ....+.+|.+..-.+++.+|.+.+..|+.. .|.+
T Consensus 257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~ 303 (523)
T 4b4t_S 257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHN 303 (523)
T ss_dssp HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCS
T ss_pred Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcc
Confidence 84 4432 344566789999999999999999999998 7754
No 265
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.77 E-value=4.6 Score=35.20 Aligned_cols=129 Identities=9% Similarity=0.008 Sum_probs=62.3
Q ss_pred HHHHhcCChhHHHHHHHHHHh--h---------CCC-hHHHHHHHHHHHHhccHHH----------HHHHHHHHHH----
Q 036703 28 RMEENLGNVAGARQIFERWMH--W---------MPD-HEGWLSYIKFKLRYNEVQR----------ARHIFERLVQ---- 81 (365)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~al~--~---------~p~-~~~~~~~~~~~~~~~~~~~----------A~~~~~~~l~---- 81 (365)
..+...+++++|.++-...+. . ++- ..+|+-+..++...|+... .+..+-.++.
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 344566788888777665541 1 111 4678877777776665543 2334434443
Q ss_pred -hCC-cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703 82 -CHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL 156 (365)
Q Consensus 82 -~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 156 (365)
.++ ....++..+...|...+.++.|.++..++. +|.. ........+.+|.++. -+++|.+|.+.+..|+
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a---~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINA---IQLDYSTANEYIIAAI 297 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHT
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHH
Confidence 222 235678888899999999999999999884 4432 1233556677899999 9999999999999999
Q ss_pred ccCCCc
Q 036703 157 DRIPKG 162 (365)
Q Consensus 157 ~~~p~~ 162 (365)
..+|.+
T Consensus 298 rkap~~ 303 (523)
T 4b4t_S 298 RKAPHN 303 (523)
T ss_dssp SSCSCS
T ss_pred HhCCcc
Confidence 988864
No 266
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.52 E-value=9.2e-05 Score=62.74 Aligned_cols=254 Identities=9% Similarity=-0.010 Sum_probs=142.9
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
+.+.+|..+|...+..|.+.+|+..|-++ -+| ..+...+....+.|.++.-+..+..+.+.-. ++.+=..++-+|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dp--s~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP--SSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCC--CSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CCh--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHH
Confidence 44778999999999999999999888655 223 3444556667778888888887776665533 555556666677
Q ss_pred HhhcchHHHHHH----------------HHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703 98 MKMGEVDRARNV----------------YECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK 161 (365)
Q Consensus 98 ~~~~~~~~A~~~----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 161 (365)
.+.++..+-.++ |+..+=. ...--..+..-|..++..+. ..|++..|.+.-++|-
T Consensus 127 Ak~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYe-AAKilys~isN~akLAstLV---~L~~yq~AVdaArKAn----- 197 (624)
T 3lvg_A 127 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD-AAKLLYNNVSNFGRLASTLV---HLGEYQAAVDGARKAN----- 197 (624)
T ss_dssp HTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCST-TSSTTGGGSCCCTTTSSSSS---SCSGGGSSTTTTTTCC-----
T ss_pred HhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHH-HHHHHHHhCccHHHHHHHHH---HHHHHHHHHHHHHhcC-----
Confidence 776654432221 1111000 00000000111222333334 5566666655444331
Q ss_pred chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703 162 GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241 (365)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 241 (365)
+...|..........+.+.- |..+- --+-..|+. +-.++..|...|-+++-+.+++.++.....+.
T Consensus 198 --s~ktWKeV~~ACvd~~EfrL--------AqicG-LniIvhade---L~elv~~YE~~G~f~ELIsLlEaglglErAHm 263 (624)
T 3lvg_A 198 --STRTWKEVCFACVDGKEFRL--------AQMCG-LHIVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHM 263 (624)
T ss_dssp --SSCSHHHHTHHHHHSCTTTT--------TTHHH-HHHHCCSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred --ChhHHHHHHHHHhCchHHHH--------HHHhc-chhcccHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence 23466666555556665542 22221 112233433 22355667889999999999999997666553
Q ss_pred hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc---hhHHHHHHHHHHHHHhCCCccHH
Q 036703 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM---EERRIFKKYIEMELCLGNIDPCR 311 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~ 311 (365)
.+...+|.+| ..-.+++-.+.++.-.+. .+.+++. .+..+|..+.-+|..-.+++.|.
T Consensus 264 ---------GmFTELaILY--sKY~PeKlmEHlklf~sr-iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 264 ---------GMFTELAILY--SKFKPQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ---------HHHHHHHHHH--HSSCTTHHHHHHTTSSSS-SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred ---------HHHHHHHHHH--HhcCHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 3667777776 455677776666543221 1111110 11345777777777777777664
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.53 E-value=12 Score=30.37 Aligned_cols=43 Identities=7% Similarity=-0.127 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhc---CChhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703 107 RNVYECAVEIFLA---DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153 (365)
Q Consensus 107 ~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 153 (365)
.++.+++++. .. .....++.++..+|..+. ..|++.+|+.+|-
T Consensus 113 ~~fi~~ai~W-S~~~g~~~~Gdp~LH~~~a~~~~---~e~~~~~A~~H~i 158 (312)
T 2wpv_A 113 KDVITGMNNW-SIKFSEYKFGDPYLHNTIGSKLL---EGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHH-HHHTSSCTTCCHHHHHHHHHHHH---HTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-HhhcCCCCCCCHHHHHHHHHHHh---hcCCHHHHHHHHH
Confidence 4455556554 21 111234899999999999 9999999998885
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.59 E-value=32 Score=33.78 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
..+...+...+.++-++++ +.. .|.+ +..-+.+|.++. ..|++++|...|+++-.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l----~~~-~~~~----~~~~yl~g~~~L---~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQL----IGW-LNSD----PIAVYLKALIYL---KSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHH----HHH-SCCC----HHHHHHHHHHHH---HTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhhhHHHHHHH----hhh-ccCC----cHHHHHHHHHHH---hcCCHHHHHHHHHHHhh
Confidence 3445556666777666543 334 5555 445577899999 99999999999998754
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.06 E-value=9.5 Score=26.49 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHHHHHHHH--------------------hcCChhHHHHHHHHHHhhCCChHHHHHHHH
Q 036703 2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEE--------------------NLGNVAGARQIFERWMHWMPDHEGWLSYIK 61 (365)
Q Consensus 2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~--------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 61 (365)
.++..++..+.+...|-+..-|+-.--+-. .+|+....+..|-+. +......-.-.+
T Consensus 23 v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~~se~vd~ALd 99 (172)
T 1wy6_A 23 IDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NTLNEHVNKALD 99 (172)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cchHHHHHHHHH
Confidence 345666777777666665555654321111 134444444444322 222333333346
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 62 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
....+|.-++-..++...+..++-++++...+|..|.+.|+..+|.+++.+|.+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6778899999999998877777778999999999999999999999999999887
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.52 E-value=34 Score=32.79 Aligned_cols=94 Identities=11% Similarity=-0.023 Sum_probs=63.8
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC-----------------
Q 036703 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD----------------- 121 (365)
Q Consensus 59 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------- 121 (365)
++..+...|.++-|+ ..+...|.++-.-+.+|.++...|++++|..+|++|-.. ....
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~g-l~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCT-TCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cccCcccccchhhhhhccCcc
Confidence 444555666666444 355667777777788999999999999999999987643 2111
Q ss_pred --hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 122 --HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
.......|...+.++. ..+-++-+...-+.||+...
T Consensus 891 e~~~~~~~YY~hV~~LFE---~~~a~~~vi~fA~lAI~~~~ 928 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLF---EESAYIDALEFSLLADASKE 928 (950)
T ss_dssp TTCSHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTCC
T ss_pred cccchhHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhhcc
Confidence 0001224556667777 88888888888888887543
No 271
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=76.51 E-value=9.1 Score=23.08 Aligned_cols=28 Identities=4% Similarity=-0.152 Sum_probs=16.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhCCC
Q 036703 25 NYIRMEENLGNVAGARQIFERWMHWMPD 52 (365)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~ 52 (365)
.+|+.+...|+.++|...|-+|+..+|.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4555555566666666666666666555
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.49 E-value=29 Score=28.09 Aligned_cols=27 Identities=0% Similarity=-0.395 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 036703 205 MNYDTWFDYIRLEERVGNQERVREVYE 231 (365)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~A~~~~~ 231 (365)
.++.++..+|..+...|++.+|+..|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578899999999999999999988775
No 273
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=75.91 E-value=20 Score=25.97 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=15.5
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703 131 AFAKFEEMGCNCKETDRARCIYKFALDRIP 160 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 160 (365)
..+..+. ..|-.++.+.+|....+.+|
T Consensus 213 ~aa~~yf---~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 213 NAARRYF---NLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHH---hcccchhHHHHHHHHHhcCC
Confidence 3444555 56666666666666555554
No 274
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=75.86 E-value=30 Score=28.00 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=67.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCC-----CchhhhHHHHhHHHHHHHHHHH--hhccCC--hhHHHHHHHHHHhcccc
Q 036703 213 YIRLEERVGNQERVREVYERAIANVP-----PAEEKRYWQRYIYLWINYALYK--EVDAGD--LERTRDVYRTLFIFYFS 283 (365)
Q Consensus 213 ~~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~a~~~~~~a~~~~~~ 283 (365)
.|.-+...|++++|+..|+.++...| +..+......++.+-..|...+ |..... -+.....++-+. ..+
T Consensus 120 ~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAA--YFT 197 (325)
T 3mv2_A 120 EGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAA--YFT 197 (325)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHH--HGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH--Hhc
Confidence 34445778999999999999987643 2222222333344433333322 111111 011111111111 111
Q ss_pred CCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703 284 FSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA 353 (365)
Q Consensus 284 ~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 353 (365)
...+.|. .-....-....++.++|..|..+-++.++..|.. ...++|+++...+-+
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~ 255 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADS 255 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhc
Confidence 1111133 2334444556679999999999999999999841 134567777776653
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.37 E-value=53 Score=29.66 Aligned_cols=204 Identities=13% Similarity=0.043 Sum_probs=111.5
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh---CCC--h---------------HHHHHHHHHHHHhccHHHHHHH
Q 036703 16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW---MPD--H---------------EGWLSYIKFKLRYNEVQRARHI 75 (365)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~--~---------------~~~~~~~~~~~~~~~~~~A~~~ 75 (365)
.|.+...-..++......|+..+|.....++... .|+ . ..|.. +......|+...|..+
T Consensus 98 ~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R-~~~al~~~~~~~a~~l 176 (618)
T 1qsa_A 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLER-IRLAMKAGNTGLVTVL 176 (618)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHH-HHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHCCCHHHHHHH
Confidence 3566777777788888889877777766665532 232 1 12211 2333344555555444
Q ss_pred HHH-------------HHHhCCcchHHH-------------HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703 76 FER-------------LVQCHPYNLSAW-------------INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129 (365)
Q Consensus 76 ~~~-------------~l~~~p~~~~~~-------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 129 (365)
... ++..+|.+.... ..++.-.....+.+.|...+....+. .+-+......++
T Consensus 177 ~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~-~~~~~~~~~~~~ 255 (618)
T 1qsa_A 177 AGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQA-QQLNEDQIQELR 255 (618)
T ss_dssp HHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-TTCCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhc-cCCCHHHHHHHH
Confidence 332 122334322211 11222222344677888888777654 433322223344
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT 209 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 209 (365)
..++.-.. ..+...++...+.+.....++.. ..-|.. ......|++. .+...|+++-...+.....
T Consensus 256 ~~ia~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~--r~Alr~~d~~--------~a~~~~~~l~~~~~~~~r~ 321 (618)
T 1qsa_A 256 DIVAWRLM---GNDVTDEQAKWRDDAIMRSQSTS-LIERRV--RMALGTGDRR--------GLNTWLARLPMEAKEKDEW 321 (618)
T ss_dssp HHHHHTSC---STTCCHHHHHHHHHHHHTCCCHH-HHHHHH--HHHHHHTCHH--------HHHHHHHHSCTTGGGSHHH
T ss_pred HHHHHHHH---HcCCChHHHHHHHhccccCCChH-HHHHHH--HHHHHCCCHH--------HHHHHHHHccccccccHhH
Confidence 44443333 44535667777777655444332 222322 3334567765 4666665544333344566
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 036703 210 WFDYIRLEERVGNQERVREVYERAIA 235 (365)
Q Consensus 210 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 235 (365)
.+-+|..+...|+.++|..+|+++..
T Consensus 322 ~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 322 RYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77788888899999999999999875
No 276
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.07 E-value=70 Score=30.54 Aligned_cols=117 Identities=4% Similarity=0.027 Sum_probs=50.9
Q ss_pred hcCChhHHHHHHHHHHhhC--CC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---c---ch----HHHHHHHH
Q 036703 32 NLGNVAGARQIFERWMHWM--PD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP---Y---NL----SAWINFAD 95 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~--p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~---~~----~~~~~~~~ 95 (365)
..|+.++++..+...+... .+ ..+.+.+|.++...++ .+...+...+.... . +. .+-+.+|.
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456666666665554311 11 2233444444433332 45555555554322 0 01 23334444
Q ss_pred HHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 96 FEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 96 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
++...++ +++.+.+...+.. ... .....+-+.+|.++. ..|+.+-...++..+..
T Consensus 464 a~~GS~~-eev~e~L~~~L~d-d~~--~~~~~AalALGli~v---GTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYN-DSA--TSGEAAALGMGLCML---GTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHT-CCH--HHHHHHHHHHHHHHT---TCCCHHHHHHHHHHHHH
T ss_pred HhcCCCC-HHHHHHHHHHHhc-CCH--HHHHHHHHHHhhhhc---ccCCHHHHHHHHHHHhc
Confidence 4444443 3444444444433 110 111234445555555 56655555555555443
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.16 E-value=64 Score=30.96 Aligned_cols=94 Identities=5% Similarity=-0.120 Sum_probs=54.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC-Ccc---
Q 036703 213 YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS-PRM--- 288 (365)
Q Consensus 213 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~--- 288 (365)
+...+...|.++-|++ .+.-.|.++. .-+..|..+ +..|++++|...|++|-.--.... ...
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~---------~~yv~gr~~-L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~ 881 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPI---------AVYLKALIY-LKSKEAVKAVRCFKTTSLVLYSHTSQFAVLR 881 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHH---------HHHHHHHHH-HHTTCHHHHHHHHHTCCCTTCSSCCSCGGGH
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChH---------HHHHHHHHH-HHcCCHHHHHHHHHHHhhhcccCcccccchh
Confidence 4444556666664433 4455666642 112345555 578888888888887653210000 000
Q ss_pred -------------hhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703 289 -------------EERRIFKKYIEMELCLGNIDPCRKLYEKYLEW 320 (365)
Q Consensus 289 -------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 320 (365)
.....|...+.+..+.+-++-+..+-+.|++.
T Consensus 882 ~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 882 EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 01235666777777777888888888888764
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=69.20 E-value=16 Score=22.00 Aligned_cols=29 Identities=3% Similarity=-0.065 Sum_probs=21.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCcc
Q 036703 58 SYIKFKLRYNEVQRARHIFERLVQCHPYN 86 (365)
Q Consensus 58 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 86 (365)
.+|..+...|++++|...|-+|+..+|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45677777788888888888888887743
No 279
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=68.23 E-value=5.2 Score=24.89 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=7.1
Q ss_pred hCCCccHHHHHHHHH
Q 036703 304 LGNIDPCRKLYEKYL 318 (365)
Q Consensus 304 ~~~~~~A~~~~~~al 318 (365)
.|++++|..+|..++
T Consensus 32 ~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 32 EGNAEEAITNYKKAI 46 (83)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 345444444444443
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=67.77 E-value=7.2 Score=24.26 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=13.7
Q ss_pred ccchhHHHHHHHHHHhc
Q 036703 141 NCKETDRARCIYKFALD 157 (365)
Q Consensus 141 ~~~~~~~A~~~~~~~l~ 157 (365)
..|++++|+.+|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 77888888888888764
No 281
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=66.48 E-value=13 Score=23.82 Aligned_cols=28 Identities=4% Similarity=-0.152 Sum_probs=17.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhCCC
Q 036703 25 NYIRMEENLGNVAGARQIFERWMHWMPD 52 (365)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~ 52 (365)
.+|..+...|+++.|...|-+|+..+|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4556666666666666666666666555
No 282
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=65.69 E-value=6.2 Score=24.54 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=5.6
Q ss_pred CCCccHHHHHHHH
Q 036703 305 GNIDPCRKLYEKY 317 (365)
Q Consensus 305 ~~~~~A~~~~~~a 317 (365)
|++++|..+|..+
T Consensus 25 g~y~eAl~lY~~a 37 (83)
T 2v6y_A 25 GKVEDAITYYKKA 37 (83)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 4444444444443
No 283
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=65.67 E-value=8.2 Score=23.98 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=13.6
Q ss_pred ccchhHHHHHHHHHHhc
Q 036703 141 NCKETDRARCIYKFALD 157 (365)
Q Consensus 141 ~~~~~~~A~~~~~~~l~ 157 (365)
..|++++|+.+|..+++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 67888888888887764
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=65.05 E-value=37 Score=24.63 Aligned_cols=196 Identities=12% Similarity=-0.015 Sum_probs=108.5
Q ss_pred hcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHH
Q 036703 32 NLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111 (365)
Q Consensus 32 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 111 (365)
+-.+++.+.-+-.-.+...| +.-..+.-...-.|++.++.-.+. .-+......--+.++...+++..|+..++
T Consensus 14 kY~dYdt~~fLsa~L~~~~~--eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le 86 (242)
T 3kae_A 14 RYRDYETAIFLAACLLPCKP--EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLE 86 (242)
T ss_dssp HTTCHHHHHHHHHHHC------CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcccccHHHHHHHHHccCCh--HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665433222222233 333344455556788888876653 23344445555677888899999999999
Q ss_pred HHHhhh---hcCC----------hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH----
Q 036703 112 CAVEIF---LADD----------HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF---- 174 (365)
Q Consensus 112 ~a~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~---- 174 (365)
..++-. .|+- ..+....+..+|.+.. ..|+.++|+..|.......|--. .+-...-.-
T Consensus 87 ~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~llt---q~g~r~EaI~y~~~Sf~~~~lf~--~vEnliyeN~vp~ 161 (242)
T 3kae_A 87 SILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCT---LSGYREEGIGHYVRSFGKSFLFS--PVENLLLENKVPQ 161 (242)
T ss_dssp HHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCCHH--HHHHHHHTTCCCC
T ss_pred HHHhcccccCcccccccceeeeccchHHHHHHHHHHHHH---HhcCHHHhhhHhhhhcCCccccc--hHHHHHhhcCCCc
Confidence 988430 1111 1234566778899999 99999999999999887665421 111100000
Q ss_pred -----HHHcCCchhhhHHHHHHHHHH--------HHHHHHcCCCCHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703 175 -----EKQYGDREGIEDAIAGKMRLQ--------YEDGVRKNPMNYDTW-FDYIRLEERVGNQERVREVYERAIANVPP 239 (365)
Q Consensus 175 -----~~~~~~~~~~~~~~~~~a~~~--------~~~~l~~~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 239 (365)
.....+...+++..+...... .++....-|.-..-+ ...+..+...|-.++.+.+|....+.+|.
T Consensus 162 ~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 162 KRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp CC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 000001111222222222222 223333345443332 33455677899999999999999888885
No 285
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=60.61 E-value=43 Score=23.91 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=25.1
Q ss_pred HhcCChhHHHHHHHHHHhhCCC----hHHHHHHHH------HHHHhccHHHHHHHHHHHHH
Q 036703 31 ENLGNVAGARQIFERWMHWMPD----HEGWLSYIK------FKLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 31 ~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~------~~~~~~~~~~A~~~~~~~l~ 81 (365)
+..|++-+|-++++.+-...+. ...|..++. ...+.|+...|..++.+++.
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3336666666666666554332 123333333 22344555555555555544
No 286
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.19 E-value=70 Score=26.17 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHH
Q 036703 125 AEQLFVAFAKFEEMGCNCKETDRARCIY 152 (365)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 152 (365)
++.++..+|..+. +.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~---~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYV---EEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHH---ccCCHHHHHHHH
Confidence 4889999999999 899999999888
No 287
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=58.19 E-value=33 Score=22.31 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHH
Q 036703 266 DLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY 331 (365)
Q Consensus 266 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 331 (365)
+.=+.+..+..+...+.- |+|.+.......+.+.+++.-|..+++-.-....+..++|-.+
T Consensus 25 D~~e~rrglN~l~~~DlV-----P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLV-----PEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp CHHHHHHHHHHHTTSSBC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cHHHHHHHHHHHhccccC-----CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 344555555555554322 8899999989999999999999999998866654444444433
No 288
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=57.05 E-value=60 Score=24.45 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHhhCCC----hH-----HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Q 036703 36 VAGARQIFERWMHWMPD----HE-----GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM 100 (365)
Q Consensus 36 ~~~A~~~~~~al~~~p~----~~-----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 100 (365)
.+.|+.+++..-+-.|- .. +-.+..-++.+.|.+++|.+++++.+..+|.+..+-..+..+-.+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 34677777776655542 11 1122334566788888888888888877665555555555544443
No 289
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=56.63 E-value=78 Score=25.62 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=67.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC-----chhhhHHHHhHHHHHHHHHHH--hhccCCh-----hHHHHHHHHHHhc
Q 036703 213 YIRLEERVGNQERVREVYERAIANVPP-----AEEKRYWQRYIYLWINYALYK--EVDAGDL-----ERTRDVYRTLFIF 280 (365)
Q Consensus 213 ~~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~a~~~~~~a~~~ 280 (365)
.|.-+...|++++|+..|+.++...|- ..+......++.+-..|...+ |...... +.....++-+.-
T Consensus 108 ~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAY- 186 (320)
T 3mkr_B 108 LCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAY- 186 (320)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHH-
Confidence 344567889999999999999987642 222222333444433333321 2222221 222222222211
Q ss_pred cccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703 281 YFSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA 353 (365)
Q Consensus 281 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 353 (365)
.+...+.|. .-....-....++.++|..|..+-++.+++.|. +. ..++|+++...+-+
T Consensus 187 -FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~-------------~~~qArkil~~ce~ 246 (320)
T 3mkr_B 187 -FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-PE-------------VAQQTRKILSACEK 246 (320)
T ss_dssp -HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HH-------------HHHHHHHHHHHHHH
T ss_pred -hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HH-------------HHHHHHHHHHHHhc
Confidence 111111133 223444455667899999999999999999874 22 23446666666543
No 290
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.60 E-value=84 Score=25.69 Aligned_cols=221 Identities=11% Similarity=0.035 Sum_probs=103.8
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHhccccch--hHHHHHHHHHHhccCCCchhHHHHHH
Q 036703 94 ADFEMKMGEVDRARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEMGCNCKE--TDRARCIYKFALDRIPKGRAEDLYRK 170 (365)
Q Consensus 94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~~~ 170 (365)
+.=|.+.+++++|++++-.......... .....++-..+..+|. ..+- -++.+.-+-+.++..|....
T Consensus 42 ~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~---~~~~~~~~~~~~rL~~L~~~~~~~~p------ 112 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFR---QAGQRVDGASRGKLLGCLRLFQPGEP------ 112 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHTCCCCHHHHHHHHHHHTTSCTTCH------
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhCCCCCc------
Confidence 3335678899999997665544312211 1112344444555555 3321 12333334444455554320
Q ss_pred HHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ch-hhhHHH-
Q 036703 171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP-AE-EKRYWQ- 247 (365)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~-~~~~~~- 247 (365)
.....+++|+..=.+.=...-.+++++..+|..+...+++.+|+..|- +..++. .. ...++.
T Consensus 113 -------------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 113 -------------VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEW 177 (336)
T ss_dssp -------------HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHH
Confidence 001112233333222111223578889999999988899988887773 221111 00 000000
Q ss_pred ------HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc----cccCC-----------Ccchh-HHH-HHHHHHHHHHh
Q 036703 248 ------RYIYLWINYALYKEVDAGDLERTRDVYRTLFIF----YFSFS-----------PRMEE-RRI-FKKYIEMELCL 304 (365)
Q Consensus 248 ------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~----~~~~~-----------~~~~~-~~~-~~~~~~~~~~~ 304 (365)
.-..+++..+.+--+..++...|...+....+. +|... .++|. |.+ +..+.-+-.+.
T Consensus 178 ~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~ 257 (336)
T 3lpz_A 178 YKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQK 257 (336)
T ss_dssp HHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhc
Confidence 002233333332225678888888876655542 22210 01233 221 22222222333
Q ss_pred CC---CccHHHHHHHHHhhCc-chHHHHHHHHHHHhhc
Q 036703 305 GN---IDPCRKLYEKYLEWSP-ENCYAWSKYTELEKSL 338 (365)
Q Consensus 305 ~~---~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~ 338 (365)
+. |..-++.|...++.+| .-......++..+...
T Consensus 258 ~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 258 GSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp CCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 42 4445555666666666 5556666677766644
No 291
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=55.17 E-value=27 Score=22.30 Aligned_cols=28 Identities=4% Similarity=-0.057 Sum_probs=20.8
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703 58 SYIKFKLRYNEVQRARHIFERLVQCHPY 85 (365)
Q Consensus 58 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 85 (365)
.+|..+...|+++.|...|-+|+..+|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4566677777888888877788877773
No 292
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.72 E-value=74 Score=26.71 Aligned_cols=104 Identities=10% Similarity=-0.043 Sum_probs=63.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCC-------Cc-hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703 215 RLEERVGNQERVREVYERAIANVP-------PA-EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP 286 (365)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~~~~~~p-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 286 (365)
.......+.++|.+.+++.....- .+ .........+.+....+..+ ...|+.+.|...++++-........
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~y-l~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTY-LLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344567788889888887643320 00 00000112355677777777 6889999999999998765322222
Q ss_pred cchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHh
Q 036703 287 RMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLE 319 (365)
Q Consensus 287 ~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 319 (365)
..|. ..++...+..+...+++..+....-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2133 55666667777778888776666555554
No 293
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=54.55 E-value=1.5e+02 Score=28.36 Aligned_cols=87 Identities=3% Similarity=-0.079 Sum_probs=47.5
Q ss_pred HhccHHHHHHHHHHHHHhC-Ccc----hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC------ChhhHHHHHHHHH
Q 036703 65 RYNEVQRARHIFERLVQCH-PYN----LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD------DHDEAEQLFVAFA 133 (365)
Q Consensus 65 ~~~~~~~A~~~~~~~l~~~-p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~ 133 (365)
..|+.++++..+.+.+-.. .++ ..+.+.+|.++...+ .++...+...+.. ... .......+-..+|
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~-~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVE-NSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHH-HSSCCSCHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcC-ccccccccccHHHHHHHHHHHH
Confidence 4567777777777665422 122 233445555555444 4688888877765 320 0011123455666
Q ss_pred HHHHhccccchhHHHHHHHHHHhcc
Q 036703 134 KFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
.++. ..++ +++.+.+...+..
T Consensus 463 la~~---GS~~-eev~e~L~~~L~d 483 (963)
T 4ady_A 463 LAAM---GSAN-IEVYEALKEVLYN 483 (963)
T ss_dssp HHST---TCCC-HHHHHHHHHHHHT
T ss_pred HHhc---CCCC-HHHHHHHHHHHhc
Confidence 6666 5554 4566777776653
No 294
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=51.98 E-value=14 Score=23.48 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHhc
Q 036703 267 LERTRDVYRTLFIF 280 (365)
Q Consensus 267 ~~~a~~~~~~a~~~ 280 (365)
.+.|+.++.+|++.
T Consensus 12 l~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 12 STAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555554
No 295
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.74 E-value=94 Score=26.09 Aligned_cols=93 Identities=8% Similarity=-0.007 Sum_probs=62.0
Q ss_pred HHHHHhccHHHHHHHHHHHHHhC-----------------CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC---
Q 036703 61 KFKLRYNEVQRARHIFERLVQCH-----------------PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD--- 120 (365)
Q Consensus 61 ~~~~~~~~~~~A~~~~~~~l~~~-----------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--- 120 (365)
.......+.++|.+.+++..... -....+....+..+...|+.+.|...++++-.. ...
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~-l~~~~~ 162 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKT-LDKKDS 162 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-HHHSCC
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-hhccCC
Confidence 34445678889999888764311 012456677888999999999999999998754 211
Q ss_pred -ChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 121 -DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
+.......+...+.++. ..+++..+....-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~---~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFK---FKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHh
Confidence 11233556666777777 78888776666555554
No 296
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=51.37 E-value=34 Score=29.44 Aligned_cols=27 Identities=11% Similarity=-0.088 Sum_probs=12.6
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703 328 WSKYTELEKSLDETERARAIFELAIAQ 354 (365)
Q Consensus 328 ~~~~~~~~~~~g~~~~A~~~~~~a~~~ 354 (365)
.+.+|.++...+++.+|.+.+..|+..
T Consensus 223 ~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 223 RYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 333444444444444444444444444
No 297
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.00 E-value=29 Score=26.11 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhc
Q 036703 297 YIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSL 338 (365)
Q Consensus 297 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 338 (365)
...++++.|.|++|.+++++....+|.+-.+...+..+-...
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 344567788888888888888887776666666666655443
No 298
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=49.71 E-value=19 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 036703 23 WNNYIRMEENLGNVAGARQIFERWMH 48 (365)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~al~ 48 (365)
...+|+-+...|+++.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45677778888888888888888775
No 299
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=48.25 E-value=18 Score=22.48 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=6.1
Q ss_pred CCCccHHHHHHHHH
Q 036703 305 GNIDPCRKLYEKYL 318 (365)
Q Consensus 305 ~~~~~A~~~~~~al 318 (365)
|++++|+.+|..++
T Consensus 27 g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 27 TQYEEAYTAYYNGL 40 (85)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 300
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=47.79 E-value=51 Score=20.94 Aligned_cols=52 Identities=8% Similarity=-0.030 Sum_probs=27.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHH-----HHHhccHHHHHHHHHHHHH
Q 036703 28 RMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKF-----KLRYNEVQRARHIFERLVQ 81 (365)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~-----~~~~~~~~~A~~~~~~~l~ 81 (365)
..+...|++-+|-++++.+-...|. ...|..++.+ ....|+. |..++.+++.
T Consensus 9 ~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 9 LGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3344457777777777776665554 2344444332 2234554 6666666554
No 301
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.59 E-value=17 Score=24.31 Aligned_cols=14 Identities=14% Similarity=0.038 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHhc
Q 036703 267 LERTRDVYRTLFIF 280 (365)
Q Consensus 267 ~~~a~~~~~~a~~~ 280 (365)
.++|+.++.+|+..
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 302
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=45.51 E-value=0.0087 Score=51.11 Aligned_cols=142 Identities=12% Similarity=0.068 Sum_probs=82.4
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh
Q 036703 59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138 (365)
Q Consensus 59 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (365)
++.++...|+++.|...-++ .+++.+|......+...+++.-|--+--..+-. |+ -.-.+...|.
T Consensus 176 LAstLV~L~~yq~AVdaArK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh--ad-------eL~elv~~YE- 240 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--AD-------ELEELINYYQ- 240 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC--SS-------CCSGGGSSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHh-----cCChhHHHHHHHHHhCchHHHHHHHhcchhccc--HH-------HHHHHHHHHH-
Confidence 33344444444444433322 246777777777777777776665544433322 11 1223344566
Q ss_pred ccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH--cCCC------CHHHH
Q 036703 139 GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR--KNPM------NYDTW 210 (365)
Q Consensus 139 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~--~~p~------~~~~~ 210 (365)
..|.+++-+.+++.++...... ..++..++-++.++.... -.+.++-... ..|+ ....|
T Consensus 241 --~~G~f~ELIsLlEaglglErAH--mGmFTELaILYsKY~PeK---------lmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 241 --DRGYFEELITMLEAALGLERAH--MGMFTELAILYSKFKPQK---------MREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp --TTCCCTTSTTTHHHHTTSTTCC--HHHHHHHHHHHHSSCTTH---------HHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred --hCCCHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHhcCHHH---------HHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 8899999999999999654433 677888877776654321 1111111000 1122 34679
Q ss_pred HHHHHHHHHhCCHHHHHH
Q 036703 211 FDYIRLEERVGNQERVRE 228 (365)
Q Consensus 211 ~~~~~~~~~~~~~~~A~~ 228 (365)
..+.-+|..-.+++.|..
T Consensus 308 ~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcchhHHHHHH
Confidence 999999999999988744
No 303
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.98 E-value=20 Score=26.50 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh
Q 036703 296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS 337 (365)
Q Consensus 296 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 337 (365)
....++++.|.+++|.+++++....+|++..+...+..+-..
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 344567788888888888888877776665555555554443
No 304
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=44.46 E-value=1.5e+02 Score=25.46 Aligned_cols=100 Identities=6% Similarity=0.010 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCCchh--------hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc--cCCCcchh-
Q 036703 222 NQERVREVYERAIANVPPAEE--------KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF--SFSPRMEE- 290 (365)
Q Consensus 222 ~~~~A~~~~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~- 290 (365)
..+.+-..+.++...+-++.. .+-|.. ..+...+...| .+.++..-+..+++..-.... .... +|.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~-l~l~n~L~kiY-Fkl~~~~lckni~k~i~~~~~~p~~~~-~p~~ 217 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRIL-LYLVNKLNNIY-FRIESPQLCSNIFKNFQPKSMLAHFNE-YQLD 217 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHH-HHHHHHHHHHH-HHSSCCTTHHHHHHTHHHHCCCSCGGG-SCHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhH-HHHHHHHHHHH-HHcCCHHHHHHHHHHhccCCCCcChhh-CCcc
Confidence 345566666666655332211 022222 22334445666 689999999998865543321 1111 143
Q ss_pred --HHHHHHHHHHHHHhCCCccHHHHHHHHHhh-Ccch
Q 036703 291 --RRIFKKYIEMELCLGNIDPCRKLYEKYLEW-SPEN 324 (365)
Q Consensus 291 --~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~ 324 (365)
....+..|.++.-.+++.+|.+.+..|+.. .|.+
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 556677788999999999999999999998 7754
No 305
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=43.59 E-value=18 Score=22.72 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703 101 GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD 157 (365)
Q Consensus 101 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 157 (365)
..+++|..+..+++.. .-.+ ..|+.++|+.+|++++.
T Consensus 11 ~~h~~AF~~Is~aL~~-DE~~-------------------~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 11 VFHKQAFEYISIALRI-DEDE-------------------KAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHH-HHHS-------------------CSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hhcc-------------------cCCCHHHHHHHHHHHHH
Confidence 3456666777776666 2211 23777777777777664
No 306
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=43.34 E-value=32 Score=21.00 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 90 WINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 90 ~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
...+|.=+...|+++.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456677788899999999999999887
No 307
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=43.17 E-value=49 Score=20.92 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 88 SAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
......++-+.+.|++++|+++.+++...
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34556677788888999998888777654
No 308
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=42.17 E-value=40 Score=21.03 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=4.6
Q ss_pred ccHHHHHHHHHH
Q 036703 67 NEVQRARHIFER 78 (365)
Q Consensus 67 ~~~~~A~~~~~~ 78 (365)
|++++|...|..
T Consensus 30 g~y~eAl~lY~~ 41 (86)
T 4a5x_A 30 SRYPQALVCYQE 41 (86)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 333333333333
No 309
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.50 E-value=35 Score=25.24 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=23.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Q 036703 60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM 100 (365)
Q Consensus 60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 100 (365)
.-++.+.|.+++|.++|++.+..++++..+-..+..+-.+.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~K 164 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQK 164 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTT
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHcc
Confidence 35567778888888888887777766665555555544433
No 310
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=41.24 E-value=77 Score=21.95 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHH
Q 036703 289 EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY 331 (365)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 331 (365)
|+|.+.......+.+.+++.-|..+++-.-....+..++|-.+
T Consensus 86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 86 PEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 8899999888999999999999999998866654444444443
No 311
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=38.13 E-value=76 Score=20.14 Aligned_cols=60 Identities=23% Similarity=0.045 Sum_probs=40.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 215 RLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
..+...|++-+|-++++..-...|. +...+|...+.+-..+-. ...|+. |...+.+++..
T Consensus 9 ~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h---~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 9 LGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQ---RRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHH---HHTTCC--CHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHH---HHcCcH--HHHHHHHHHHH
Confidence 3345669999999999999888854 555555555443333222 246666 88889988775
No 312
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=38.05 E-value=74 Score=19.97 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703 68 EVQRARHIFERLVQCHPYNLSAWINFADFEMK 99 (365)
Q Consensus 68 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 99 (365)
.++.|+.+++++-....+++..|.....++..
T Consensus 9 ~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~ 40 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQPDIYKAFLEILHT 40 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 35667777777777666666666666655554
No 313
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=37.62 E-value=83 Score=20.44 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=42.1
Q ss_pred cCChhHHHHHHHHHHhhCCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHH
Q 036703 33 LGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111 (365)
Q Consensus 33 ~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 111 (365)
....++|..+ -..+...++. -+-.-........|+|++|..+.+... .| +...|..+ +..+.|-.+++..-+.
T Consensus 20 ~H~HqEA~tI-AdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~p-dlepw~AL--ce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 20 NHYHEEANCI-AEWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA--YP-DLEPWLAL--CEYRLGLGSALESRLN 93 (116)
T ss_dssp TTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CG-GGHHHHHH--HHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--Cc-hHHHHHHH--HHHhcccHHHHHHHHH
Confidence 3345556433 3455556662 222223344667889999887766543 44 55555544 4456666666666554
Q ss_pred HHH
Q 036703 112 CAV 114 (365)
Q Consensus 112 ~a~ 114 (365)
+.-
T Consensus 94 ~la 96 (116)
T 2p58_C 94 RLA 96 (116)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 314
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.69 E-value=55 Score=21.80 Aligned_cols=16 Identities=6% Similarity=-0.056 Sum_probs=9.8
Q ss_pred cchHHHHHHHHHHHhh
Q 036703 101 GEVDRARNVYECAVEI 116 (365)
Q Consensus 101 ~~~~~A~~~~~~a~~~ 116 (365)
..+++|..+..++++.
T Consensus 17 ~~h~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3455666666666666
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.60 E-value=1.2e+02 Score=21.65 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=43.3
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCc-hhhhHHHHhHH-HHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 216 LEERVGNQERVREVYERAIANVPPA-EEKRYWQRYIY-LWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
.+...|++-+|-++++.+-...+.. .+..+|..++. +-..+ . -...|+..-|..++.+++..
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl--~-H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAY--K-HFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHH--H-HHHHCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH--H-HHHhCCHHHHHHHHHHHHHH
Confidence 3455699999999999998886543 33455555443 22222 2 24789999999999999875
No 316
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=34.09 E-value=53 Score=21.27 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHHhhCCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHH
Q 036703 34 GNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYEC 112 (365)
Q Consensus 34 g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 112 (365)
...++|..+ -..+...++. -+-.-........|+|++|..+.+... .| +...|.. .+..+.|-.+++..-+.+
T Consensus 20 H~HqEA~tI-AdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~p-dlepw~A--Lce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCI-AEWLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP--WP-ALEPWFA--LCEWHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CG-GGHHHHH--HHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--Cc-hHHHHHH--HHHHhcccHHHHHHHHHH
Confidence 344555433 3455555652 222222344667889988887665443 34 4555554 445566766666665544
Q ss_pred HH
Q 036703 113 AV 114 (365)
Q Consensus 113 a~ 114 (365)
.-
T Consensus 94 la 95 (115)
T 2uwj_G 94 LG 95 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 317
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=33.88 E-value=1.9e+02 Score=26.30 Aligned_cols=45 Identities=24% Similarity=0.198 Sum_probs=36.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703 57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG 101 (365)
Q Consensus 57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 101 (365)
...++-....|++.-|.++...++..+|++..+....++.+.+.|
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 344555567789999999999999999999888888888777766
No 318
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=33.50 E-value=1.4e+02 Score=22.19 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=8.3
Q ss_pred HHHHHhccHHHHHHHHHHHHHh
Q 036703 61 KFKLRYNEVQRARHIFERLVQC 82 (365)
Q Consensus 61 ~~~~~~~~~~~A~~~~~~~l~~ 82 (365)
.++...+++.+|.+.|..|+..
T Consensus 22 r~~~~~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 22 RKAMFDSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 319
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=30.89 E-value=2.4e+02 Score=23.73 Aligned_cols=93 Identities=10% Similarity=0.153 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHH-HHHHHH---------------HhccHHHHHHHHHHHHHhC
Q 036703 20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLS-YIKFKL---------------RYNEVQRARHIFERLVQCH 83 (365)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~---------------~~~~~~~A~~~~~~~l~~~ 83 (365)
..+-..||+-+...|+...|.-+|--+-.++.-..+|.. +-.... ...+.-+=..+|++++...
T Consensus 248 ~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~Lqe~iEkv~vl~~a~~~~ 327 (399)
T 2pm7_A 248 NEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDNKTIYEAHSECMTEFIERFTVFSNFINGS 327 (399)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHSHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHhcchhhhccccccCCcccccHHHHHHHHHHHHHHHHHHhcC
Confidence 444568888888888888888777665333222566755 221110 0111111222333333211
Q ss_pred --Cc---chHHHHHHHHHHHhhcchHHHHHHHHH
Q 036703 84 --PY---NLSAWINFADFEMKMGEVDRARNVYEC 112 (365)
Q Consensus 84 --p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~ 112 (365)
+. -...+..+|.++..+|.++.|.++++.
T Consensus 328 ~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~ 361 (399)
T 2pm7_A 328 STINNEQLIAKFLEFINLTTSTGNFELATEFLNS 361 (399)
T ss_dssp --CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 11 234577889999999999999998874
No 320
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=26.97 E-value=2.7e+02 Score=23.11 Aligned_cols=23 Identities=0% Similarity=-0.390 Sum_probs=10.4
Q ss_pred HHHHHHHHhCCCccHHHHHHHHH
Q 036703 296 KYIEMELCLGNIDPCRKLYEKYL 318 (365)
Q Consensus 296 ~~~~~~~~~~~~~~A~~~~~~al 318 (365)
.+|..+.+.+++.+|...+-.+-
T Consensus 301 ylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 301 YLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhcchHHHHHHHHHHHH
Confidence 33444444444444444444443
No 321
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.82 E-value=2e+02 Score=21.39 Aligned_cols=37 Identities=5% Similarity=-0.155 Sum_probs=30.4
Q ss_pred CCCchH--HHHHHHHHHHhcCChhHHHHHHHHHHhhCCC
Q 036703 16 SPRVDQ--LWNNYIRMEENLGNVAGARQIFERWMHWMPD 52 (365)
Q Consensus 16 ~p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 52 (365)
.|.+.. ..+-+|.++...+++.+|.+.+..|++..|.
T Consensus 8 ~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 8 YSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 455533 3567899999999999999999999998886
No 322
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.90 E-value=2.9e+02 Score=22.99 Aligned_cols=45 Identities=9% Similarity=0.134 Sum_probs=35.0
Q ss_pred HHHHHHHHHHh-----CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703 72 ARHIFERLVQC-----HPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 72 A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 116 (365)
+..+|.+++.. .......++.+|.++.+.+++.+|+..+-.+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 66677777653 2235677888899999999999999999888766
No 323
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=25.49 E-value=1.9e+02 Score=22.64 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhhh---h--cCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703 103 VDRARNVYECAVEIF---L--ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158 (365)
Q Consensus 103 ~~~A~~~~~~a~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 158 (365)
.+.|.+.|+.|.+.- . |+.+|....+.+++..+|. .-.+++++|..+-++++..
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyY--EIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKY--DLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHH--TTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhh
Confidence 456778888876541 3 4334555566667766655 1468888888887776643
No 324
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=24.33 E-value=1.9e+02 Score=22.75 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703 250 IYLWINYALYKEVDAGDLERTRDVYRTLFIF 280 (365)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 280 (365)
+.+.++++.|+.--.+++++|..+.++|+..
T Consensus 196 LGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 196 LATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4466677776633679999999998888765
No 325
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.51 E-value=93 Score=18.68 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCC-cchHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 036703 73 RHIFERLVQCHP-YNLSAWINFADFEMKMGEVDRARNVYECAVE 115 (365)
Q Consensus 73 ~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 115 (365)
...|++||...| +.+.-|..+|...-. ...++.+..|....+
T Consensus 16 ~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 16 LQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp HHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 346667777666 345666666664432 455666666665443
No 326
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=21.96 E-value=52 Score=19.77 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCcCCCCCc
Q 036703 343 RARAIFELAIAQPILDLPE 361 (365)
Q Consensus 343 ~A~~~~~~a~~~~~~~~p~ 361 (365)
+=.++|++||...|.+.|+
T Consensus 26 eE~K~FE~ALa~yp~~tpd 44 (74)
T 4eef_G 26 SENIAFEIALSFTNKDTPD 44 (74)
T ss_dssp THHHHHHHHTSSSCSSCCS
T ss_pred HHHHHHHHHHHHCCCCCCc
Confidence 3457788899888877765
No 327
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=20.74 E-value=2.9e+02 Score=21.13 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=52.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhC---CC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703 26 YIRMEENLGNVAGARQIFERWMHWM---PD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE 97 (365)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~al~~~---p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 97 (365)
-.+++....++++|....+++-+.. ++ ...-......-... +-..-...+.+.+.. ...+.........+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~e-R~~~L~~~L~~~l~~-~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQ-RREAISSKLSQSILS-SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHH-HHHHHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHH-HHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 3467778899999999888765321 21 11111222222221 112222333344444 33677777778889
Q ss_pred HhhcchHHHHHHHHHHHhh
Q 036703 98 MKMGEVDRARNVYECAVEI 116 (365)
Q Consensus 98 ~~~~~~~~A~~~~~~a~~~ 116 (365)
.+.|+-++|.++|-++...
T Consensus 102 ~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHHH
Confidence 9999999999998877654
Done!