BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036704
         (634 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 33/148 (22%)

Query: 467 MRSSGVRPNHVTLVGVLTACSHV--GLVEEGLQLYRIMQNEYGIIPTRERRSC-VVDLLA 523
           +R+  + PNH  + G L AC +   GL++  +  YR       + P      C + + L 
Sbjct: 227 LRALSLSPNHAVVHGNL-ACVYYEQGLIDLAIDTYR---RAIELQPHFPDAYCNLANALK 282

Query: 524 RAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTH--------------GNVDVGKRAAEN 569
             G V EAED             + + L  C TH              GN++   R    
Sbjct: 283 EKGSVAEAED------------CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330

Query: 570 ILKIDPTNSAALVLLCNIYASSGKWEEV 597
            L++ P  +AA   L ++    GK +E 
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEA 358


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,568,481
Number of Sequences: 62578
Number of extensions: 736515
Number of successful extensions: 2209
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2209
Number of HSP's gapped (non-prelim): 2
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)