Query 036704
Match_columns 634
No_of_seqs 577 out of 3328
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 04:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.3E-85 5.1E-90 714.2 66.6 612 13-632 122-745 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.4E-72 3E-77 599.4 58.5 496 42-631 86-581 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3E-72 6.5E-77 611.4 60.9 563 40-612 48-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 7.6E-66 1.6E-70 548.8 58.7 513 75-614 365-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7E-65 1.5E-69 541.4 53.0 490 21-572 379-908 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2E-55 4.4E-60 468.0 40.8 456 14-510 89-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-33 6E-38 313.8 60.8 578 16-606 299-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.8E-33 1.7E-37 310.1 60.2 581 16-610 265-869 (899)
9 PRK11447 cellulose synthase su 100.0 6.2E-25 1.3E-29 245.9 58.1 406 188-606 276-739 (1157)
10 PRK11447 cellulose synthase su 100.0 3.6E-24 7.7E-29 239.9 57.0 580 17-609 33-702 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 8.2E-23 1.8E-27 218.2 56.4 558 22-607 54-706 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 3.3E-22 7.2E-27 189.4 32.4 381 148-596 118-508 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.7E-19 3.7E-24 193.0 51.0 571 12-608 78-741 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 9.3E-21 2E-25 179.7 30.6 423 118-607 51-485 (966)
15 PRK11788 tetratricopeptide rep 99.9 3.2E-20 6.9E-25 185.9 28.6 247 378-628 110-378 (389)
16 KOG2002 TPR-containing nuclear 99.9 3.7E-18 8E-23 170.9 41.2 572 28-609 146-800 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 3E-18 6.5E-23 180.6 42.9 418 149-607 130-571 (615)
18 PRK11788 tetratricopeptide rep 99.9 1.2E-18 2.7E-23 174.4 31.1 298 156-513 45-354 (389)
19 PRK10049 pgaA outer membrane p 99.8 2E-17 4.4E-22 177.4 40.9 187 421-607 248-456 (765)
20 PRK15174 Vi polysaccharide exp 99.8 3.9E-17 8.4E-22 171.4 40.4 354 127-578 17-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 7.1E-17 1.5E-21 173.2 41.4 417 77-582 12-465 (765)
22 KOG2002 TPR-containing nuclear 99.8 2.4E-16 5.1E-21 158.1 41.3 516 59-607 145-745 (1018)
23 PRK15174 Vi polysaccharide exp 99.8 5.7E-17 1.2E-21 170.1 37.9 230 374-609 143-383 (656)
24 TIGR00990 3a0801s09 mitochondr 99.8 4.9E-16 1.1E-20 163.9 45.0 256 288-579 307-577 (615)
25 PRK14574 hmsH outer membrane p 99.8 1.2E-15 2.6E-20 160.4 46.2 443 90-581 44-521 (822)
26 KOG4422 Uncharacterized conser 99.8 2E-15 4.4E-20 137.7 41.1 424 51-575 122-592 (625)
27 PRK14574 hmsH outer membrane p 99.8 1.3E-14 2.9E-19 152.6 47.0 433 123-607 42-513 (822)
28 KOG2003 TPR repeat-containing 99.8 4.8E-16 1E-20 142.6 30.1 206 384-593 499-709 (840)
29 KOG0495 HAT repeat protein [RN 99.8 1.7E-13 3.6E-18 131.9 43.6 522 28-625 362-896 (913)
30 KOG4422 Uncharacterized conser 99.7 3.2E-14 7E-19 129.9 35.0 362 77-471 204-591 (625)
31 KOG2076 RNA polymerase III tra 99.7 1.8E-13 3.8E-18 137.0 42.0 570 24-607 151-849 (895)
32 KOG2076 RNA polymerase III tra 99.7 2E-13 4.2E-18 136.7 41.2 589 9-603 170-891 (895)
33 KOG4318 Bicoid mRNA stability 99.7 1.1E-12 2.4E-17 130.7 38.0 520 66-621 12-607 (1088)
34 KOG0495 HAT repeat protein [RN 99.6 3.1E-10 6.8E-15 109.9 47.3 500 59-606 266-781 (913)
35 KOG2003 TPR repeat-containing 99.6 6.7E-13 1.5E-17 122.3 27.9 426 152-607 207-689 (840)
36 KOG0547 Translocase of outer m 99.6 6.1E-12 1.3E-16 117.4 32.1 397 151-605 120-564 (606)
37 PF13429 TPR_15: Tetratricopep 99.6 3E-15 6.5E-20 141.7 10.6 226 376-606 45-276 (280)
38 KOG4318 Bicoid mRNA stability 99.6 1.3E-11 2.7E-16 123.3 35.0 574 15-613 28-814 (1088)
39 KOG2047 mRNA splicing factor [ 99.6 3.9E-10 8.4E-15 109.0 41.7 549 12-601 102-717 (835)
40 KOG1915 Cell cycle control pro 99.6 2.9E-10 6.2E-15 105.9 39.2 458 50-572 79-584 (677)
41 KOG1155 Anaphase-promoting com 99.6 4E-11 8.6E-16 111.4 32.4 321 273-606 162-494 (559)
42 KOG1155 Anaphase-promoting com 99.6 1.2E-11 2.7E-16 114.6 29.1 357 212-605 160-534 (559)
43 KOG1915 Cell cycle control pro 99.6 5.7E-10 1.2E-14 104.0 39.8 470 79-606 72-584 (677)
44 KOG1173 Anaphase-promoting com 99.6 1.2E-11 2.6E-16 117.7 29.6 246 355-606 259-517 (611)
45 PRK10747 putative protoheme IX 99.5 8.8E-12 1.9E-16 123.5 29.5 279 287-606 96-389 (398)
46 PRK10747 putative protoheme IX 99.5 4.2E-11 9E-16 118.7 32.7 281 229-574 97-391 (398)
47 KOG1126 DNA-binding cell divis 99.5 2.7E-12 5.9E-17 124.7 22.0 279 290-607 334-620 (638)
48 TIGR00540 hemY_coli hemY prote 99.5 5.8E-11 1.3E-15 118.4 32.5 127 475-605 262-397 (409)
49 KOG1126 DNA-binding cell divis 99.5 5.9E-12 1.3E-16 122.4 21.1 245 355-606 334-585 (638)
50 TIGR00540 hemY_coli hemY prote 99.5 9.7E-11 2.1E-15 116.9 30.2 283 285-572 94-398 (409)
51 PF13429 TPR_15: Tetratricopep 99.5 2.4E-13 5.2E-18 128.7 10.0 225 380-607 13-243 (280)
52 KOG0547 Translocase of outer m 99.4 1E-09 2.2E-14 102.8 31.7 192 378-575 363-568 (606)
53 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.5E-14 100.3 31.3 267 277-605 120-388 (400)
54 TIGR02521 type_IV_pilW type IV 99.4 7.7E-11 1.7E-15 109.0 22.5 197 409-606 30-231 (234)
55 COG3071 HemY Uncharacterized e 99.4 7.9E-10 1.7E-14 101.4 27.9 282 159-503 97-388 (400)
56 KOG1173 Anaphase-promoting com 99.4 1.1E-09 2.3E-14 104.7 29.7 281 274-588 243-533 (611)
57 KOG4162 Predicted calmodulin-b 99.4 1.1E-08 2.5E-13 101.5 35.6 138 479-619 653-794 (799)
58 COG2956 Predicted N-acetylgluc 99.4 1.6E-09 3.5E-14 96.2 26.3 268 159-486 48-325 (389)
59 COG2956 Predicted N-acetylgluc 99.3 6.8E-10 1.5E-14 98.6 23.3 294 288-613 48-353 (389)
60 KOG1174 Anaphase-promoting com 99.3 1.1E-08 2.4E-13 93.9 31.5 195 385-584 310-511 (564)
61 KOG3785 Uncharacterized conser 99.3 1.5E-08 3.3E-13 91.2 31.2 442 51-576 29-493 (557)
62 KOG2376 Signal recognition par 99.3 5.6E-08 1.2E-12 93.8 37.0 178 423-604 320-517 (652)
63 KOG1840 Kinesin light chain [C 99.3 4.3E-10 9.4E-15 110.8 23.0 232 374-605 198-477 (508)
64 PF13041 PPR_2: PPR repeat fam 99.3 9.2E-12 2E-16 82.0 6.2 50 273-322 1-50 (50)
65 KOG0985 Vesicle coat protein c 99.3 2.6E-06 5.7E-11 87.3 47.2 465 118-604 609-1246(1666)
66 PF13041 PPR_2: PPR repeat fam 99.3 1E-11 2.2E-16 81.7 5.9 50 144-193 1-50 (50)
67 KOG2047 mRNA splicing factor [ 99.3 1.9E-06 4.1E-11 84.2 43.5 317 275-605 248-613 (835)
68 PF12569 NARP1: NMDA receptor- 99.2 3.7E-08 8E-13 98.6 31.5 149 52-206 12-168 (517)
69 PRK12370 invasion protein regu 99.2 5.2E-09 1.1E-13 108.6 26.6 241 355-608 276-536 (553)
70 TIGR02521 type_IV_pilW type IV 99.2 4.8E-09 1E-13 96.9 23.6 199 374-575 30-234 (234)
71 KOG1156 N-terminal acetyltrans 99.2 4.1E-07 8.8E-12 89.0 36.5 447 25-505 20-511 (700)
72 PRK12370 invasion protein regu 99.2 3.1E-09 6.8E-14 110.3 23.8 212 389-607 275-502 (553)
73 KOG3616 Selective LIM binding 99.2 5.9E-08 1.3E-12 95.6 29.8 439 18-607 563-1024(1636)
74 COG3063 PilF Tfp pilus assembl 99.2 2.8E-09 6E-14 90.5 17.6 161 444-608 38-203 (250)
75 KOG4162 Predicted calmodulin-b 99.2 6.3E-07 1.4E-11 89.5 36.5 478 57-579 240-789 (799)
76 KOG1156 N-terminal acetyltrans 99.2 5.3E-07 1.2E-11 88.2 35.3 424 54-609 17-470 (700)
77 KOG1129 TPR repeat-containing 99.2 1.6E-09 3.5E-14 96.3 16.6 227 377-608 225-459 (478)
78 PRK11189 lipoprotein NlpI; Pro 99.2 1.9E-09 4.1E-14 102.2 18.1 214 355-576 41-268 (296)
79 KOG1174 Anaphase-promoting com 99.2 7.7E-07 1.7E-11 82.2 33.6 288 286-610 207-503 (564)
80 KOG3617 WD40 and TPR repeat-co 99.2 5.7E-07 1.2E-11 90.0 34.7 230 21-302 737-994 (1416)
81 KOG1840 Kinesin light chain [C 99.1 4.9E-08 1.1E-12 96.5 25.7 199 280-502 246-476 (508)
82 KOG3785 Uncharacterized conser 99.1 1.3E-06 2.7E-11 79.1 31.2 446 22-515 32-497 (557)
83 KOG2376 Signal recognition par 99.1 3.2E-06 6.9E-11 82.0 35.9 222 51-310 19-258 (652)
84 KOG0985 Vesicle coat protein c 99.1 2.5E-05 5.4E-10 80.5 42.6 544 19-603 613-1304(1666)
85 KOG1129 TPR repeat-containing 99.1 3.8E-09 8.2E-14 93.9 13.9 225 50-304 229-458 (478)
86 PF12569 NARP1: NMDA receptor- 99.1 9.1E-07 2E-11 88.8 32.2 285 222-538 10-331 (517)
87 PRK11189 lipoprotein NlpI; Pro 99.0 1.5E-07 3.2E-12 89.4 25.2 217 387-612 38-270 (296)
88 KOG1127 TPR repeat-containing 99.0 1.3E-06 2.8E-11 89.6 31.9 163 11-174 491-658 (1238)
89 KOG3616 Selective LIM binding 99.0 4.3E-05 9.4E-10 76.1 39.4 69 517-585 1297-1367(1636)
90 KOG1125 TPR repeat-containing 99.0 2.2E-08 4.8E-13 96.4 16.1 219 385-606 295-526 (579)
91 COG3063 PilF Tfp pilus assembl 99.0 4.1E-07 9E-12 77.6 21.7 192 381-576 41-239 (250)
92 KOG0548 Molecular co-chaperone 99.0 1.1E-06 2.5E-11 84.2 27.2 408 154-608 10-456 (539)
93 PF04733 Coatomer_E: Coatomer 99.0 2.8E-08 6.1E-13 92.6 16.1 217 377-606 37-264 (290)
94 PF04733 Coatomer_E: Coatomer 99.0 4.3E-08 9.2E-13 91.4 17.3 201 372-579 63-271 (290)
95 KOG4340 Uncharacterized conser 98.9 2E-07 4.3E-12 82.2 18.5 417 113-606 8-442 (459)
96 KOG0624 dsRNA-activated protei 98.9 3.1E-06 6.6E-11 76.4 25.8 315 216-579 38-376 (504)
97 PRK04841 transcriptional regul 98.9 0.00016 3.5E-09 81.3 46.0 254 355-608 467-761 (903)
98 KOG0548 Molecular co-chaperone 98.8 8.4E-06 1.8E-10 78.4 28.3 101 53-156 11-114 (539)
99 cd05804 StaR_like StaR_like; a 98.8 1.4E-05 2.9E-10 79.1 30.7 301 275-608 6-337 (355)
100 PRK10370 formate-dependent nit 98.8 4.6E-07 1E-11 79.8 17.4 148 448-609 23-175 (198)
101 KOG3617 WD40 and TPR repeat-co 98.8 1.1E-05 2.5E-10 81.1 27.5 253 114-437 725-994 (1416)
102 KOG4340 Uncharacterized conser 98.8 3.4E-06 7.4E-11 74.6 21.1 285 278-602 13-334 (459)
103 TIGR03302 OM_YfiO outer membra 98.7 1.1E-06 2.3E-11 81.1 18.8 181 409-607 32-232 (235)
104 KOG1070 rRNA processing protei 98.7 1.6E-06 3.4E-11 92.1 21.0 199 409-611 1457-1667(1710)
105 cd05804 StaR_like StaR_like; a 98.7 5E-05 1.1E-09 75.1 30.2 195 377-573 116-336 (355)
106 KOG1127 TPR repeat-containing 98.7 8.1E-05 1.7E-09 77.0 31.2 179 58-243 472-657 (1238)
107 KOG0624 dsRNA-activated protei 98.7 5.7E-05 1.2E-09 68.5 26.7 89 451-542 279-372 (504)
108 PRK15359 type III secretion sy 98.7 4.6E-07 9.9E-12 75.4 12.7 89 518-606 30-120 (144)
109 KOG1914 mRNA cleavage and poly 98.6 0.00037 8E-09 67.4 32.2 182 356-538 347-536 (656)
110 PRK15359 type III secretion sy 98.6 1.8E-06 4E-11 71.8 15.1 123 461-589 13-137 (144)
111 KOG2053 Mitochondrial inherita 98.6 0.0011 2.4E-08 68.3 39.2 543 25-620 22-619 (932)
112 PLN02789 farnesyltranstransfer 98.6 1.8E-05 4E-10 75.0 22.5 219 383-605 45-300 (320)
113 KOG1128 Uncharacterized conser 98.6 1.3E-06 2.7E-11 86.9 14.7 222 371-610 394-619 (777)
114 COG5010 TadD Flp pilus assembl 98.6 4.9E-06 1.1E-10 72.8 16.5 155 445-602 70-226 (257)
115 COG5010 TadD Flp pilus assembl 98.5 1.5E-05 3.2E-10 69.9 18.1 153 414-569 70-227 (257)
116 PF12854 PPR_1: PPR repeat 98.5 1.3E-07 2.9E-12 55.5 3.9 33 211-243 2-34 (34)
117 KOG3060 Uncharacterized conser 98.5 3.3E-05 7.2E-10 67.1 19.4 194 388-584 25-231 (289)
118 PRK04841 transcriptional regul 98.5 0.00028 6E-09 79.4 32.9 299 190-538 418-757 (903)
119 PRK15179 Vi polysaccharide bio 98.5 2.4E-05 5.1E-10 82.0 22.1 127 476-605 86-215 (694)
120 KOG1128 Uncharacterized conser 98.5 7E-06 1.5E-10 81.8 16.8 189 405-608 393-583 (777)
121 PRK10370 formate-dependent nit 98.5 2.2E-05 4.7E-10 69.2 18.4 154 417-582 23-182 (198)
122 KOG1070 rRNA processing protei 98.5 6.7E-05 1.4E-09 80.3 24.3 232 373-605 1456-1698(1710)
123 PF12854 PPR_1: PPR repeat 98.5 2.8E-07 6.1E-12 54.1 4.0 32 405-436 2-33 (34)
124 COG4783 Putative Zn-dependent 98.5 0.00012 2.6E-09 70.0 23.5 137 450-608 315-455 (484)
125 TIGR03302 OM_YfiO outer membra 98.4 1.7E-05 3.6E-10 73.1 17.9 184 372-576 30-235 (235)
126 KOG1125 TPR repeat-containing 98.4 1.2E-05 2.6E-10 78.1 16.7 221 374-600 318-564 (579)
127 PRK15363 pathogenicity island 98.4 3E-06 6.4E-11 69.0 10.6 96 513-608 36-133 (157)
128 TIGR02552 LcrH_SycD type III s 98.4 5.1E-06 1.1E-10 68.9 12.4 95 513-607 18-114 (135)
129 COG4783 Putative Zn-dependent 98.4 4.1E-05 9E-10 73.1 19.4 177 425-606 252-436 (484)
130 KOG3060 Uncharacterized conser 98.4 5E-05 1.1E-09 66.0 18.0 163 443-609 54-222 (289)
131 KOG3081 Vesicle coat complex C 98.4 0.00022 4.8E-09 62.6 21.9 175 397-578 95-276 (299)
132 PRK14720 transcript cleavage f 98.4 4.1E-05 8.8E-10 81.1 20.4 196 373-589 29-268 (906)
133 KOG3081 Vesicle coat complex C 98.3 0.00013 2.8E-09 64.1 18.5 157 448-618 115-278 (299)
134 PLN02789 farnesyltranstransfer 98.3 0.00011 2.4E-09 69.8 20.0 187 420-609 47-252 (320)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.9E-05 4E-10 76.4 14.6 122 479-605 172-295 (395)
136 TIGR02552 LcrH_SycD type III s 98.2 4E-05 8.7E-10 63.5 13.8 116 463-582 5-123 (135)
137 PRK15179 Vi polysaccharide bio 98.2 8.8E-05 1.9E-09 77.8 19.0 139 440-583 85-227 (694)
138 PF09976 TPR_21: Tetratricopep 98.2 5.1E-05 1.1E-09 63.5 14.0 124 479-604 15-144 (145)
139 PF12895 Apc3: Anaphase-promot 98.2 3.1E-06 6.8E-11 63.0 4.9 78 525-603 2-83 (84)
140 PF07079 DUF1347: Protein of u 98.1 0.0085 1.8E-07 57.2 34.8 325 274-605 127-522 (549)
141 PRK14720 transcript cleavage f 98.1 0.00092 2E-08 71.2 23.5 236 80-386 31-268 (906)
142 TIGR00756 PPR pentatricopeptid 98.1 5E-06 1.1E-10 49.8 4.2 35 147-181 1-35 (35)
143 PF13414 TPR_11: TPR repeat; P 98.1 1.1E-05 2.4E-10 57.5 6.5 64 543-606 2-66 (69)
144 cd00189 TPR Tetratricopeptide 98.1 4.1E-05 8.8E-10 58.8 10.4 93 515-607 3-97 (100)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00021 4.6E-09 59.7 15.0 127 443-571 14-145 (145)
146 TIGR00756 PPR pentatricopeptid 98.1 6.1E-06 1.3E-10 49.4 4.1 35 276-310 1-35 (35)
147 TIGR02795 tol_pal_ybgF tol-pal 98.1 8E-05 1.7E-09 60.0 11.9 92 516-607 6-105 (119)
148 PF13812 PPR_3: Pentatricopept 98.0 8E-06 1.7E-10 48.5 4.0 33 147-179 2-34 (34)
149 PF13812 PPR_3: Pentatricopept 98.0 9.1E-06 2E-10 48.2 4.0 33 276-308 2-34 (34)
150 PF13432 TPR_16: Tetratricopep 98.0 1.9E-05 4.1E-10 55.4 6.3 58 550-607 3-60 (65)
151 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00017 3.6E-09 58.2 12.3 107 477-583 3-115 (119)
152 KOG0553 TPR repeat-containing 98.0 2.7E-05 5.8E-10 69.7 7.8 122 459-595 76-200 (304)
153 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0003 6.5E-09 68.2 15.4 126 411-540 170-296 (395)
154 KOG0553 TPR repeat-containing 98.0 8E-05 1.7E-09 66.8 10.5 100 448-551 88-189 (304)
155 PLN03088 SGT1, suppressor of 97.9 0.00013 2.8E-09 71.1 11.7 108 482-591 8-117 (356)
156 PRK02603 photosystem I assembl 97.9 0.00017 3.7E-09 62.4 11.3 97 512-608 35-150 (172)
157 COG4235 Cytochrome c biogenesi 97.8 0.00025 5.4E-09 64.2 11.6 106 509-614 153-263 (287)
158 KOG1914 mRNA cleavage and poly 97.8 0.041 8.8E-07 54.0 36.5 182 391-575 309-503 (656)
159 KOG2041 WD40 repeat protein [G 97.8 0.022 4.8E-07 57.3 25.2 191 25-241 676-877 (1189)
160 CHL00033 ycf3 photosystem I as 97.8 0.00027 5.8E-09 61.0 10.7 93 512-604 35-139 (168)
161 PF14559 TPR_19: Tetratricopep 97.8 4.3E-05 9.2E-10 54.2 4.5 53 555-607 2-54 (68)
162 PF05843 Suf: Suppressor of fo 97.8 0.001 2.2E-08 62.4 15.0 135 442-579 2-142 (280)
163 KOG2053 Mitochondrial inherita 97.7 0.085 1.8E-06 55.1 42.1 488 54-600 19-563 (932)
164 PF13371 TPR_9: Tetratricopept 97.7 0.00013 2.8E-09 52.6 6.6 59 551-609 2-60 (73)
165 COG4700 Uncharacterized protei 97.7 0.0063 1.4E-07 50.6 16.6 130 473-604 86-219 (251)
166 PF01535 PPR: PPR repeat; Int 97.7 5.3E-05 1.1E-09 43.7 3.4 31 276-306 1-31 (31)
167 PF13432 TPR_16: Tetratricopep 97.7 0.00014 3E-09 51.0 6.2 61 518-578 3-65 (65)
168 PLN03088 SGT1, suppressor of 97.7 0.00085 1.9E-08 65.4 13.8 101 447-551 8-110 (356)
169 PF01535 PPR: PPR repeat; Int 97.7 5.7E-05 1.2E-09 43.6 3.5 31 147-177 1-31 (31)
170 cd00189 TPR Tetratricopeptide 97.7 0.00059 1.3E-08 52.1 10.4 93 481-575 5-99 (100)
171 PF12895 Apc3: Anaphase-promot 97.7 0.00014 3E-09 54.1 6.3 80 490-569 3-83 (84)
172 KOG0550 Molecular chaperone (D 97.7 0.0017 3.7E-08 60.9 14.4 165 439-609 166-352 (486)
173 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.06 1.3E-06 51.5 26.9 134 442-578 398-536 (660)
174 PRK10153 DNA-binding transcrip 97.6 0.0019 4E-08 65.9 15.8 139 439-579 335-488 (517)
175 PRK02603 photosystem I assembl 97.6 0.0027 5.8E-08 54.9 14.4 126 443-592 37-165 (172)
176 PRK15331 chaperone protein Sic 97.6 0.002 4.4E-08 53.0 12.2 87 520-606 45-133 (165)
177 PF14559 TPR_19: Tetratricopep 97.6 0.00014 3.1E-09 51.5 4.8 63 523-585 2-66 (68)
178 PF14938 SNAP: Soluble NSF att 97.5 0.0052 1.1E-07 58.0 16.5 126 479-604 117-263 (282)
179 PF12688 TPR_5: Tetratrico pep 97.5 0.002 4.4E-08 50.9 11.0 87 518-604 7-101 (120)
180 PF08579 RPM2: Mitochondrial r 97.5 0.0017 3.8E-08 49.1 9.6 88 277-386 27-115 (120)
181 PRK10866 outer membrane biogen 97.4 0.02 4.2E-07 52.4 18.3 173 416-605 38-239 (243)
182 PF10037 MRP-S27: Mitochondria 97.4 0.0031 6.8E-08 61.6 13.6 120 370-489 61-186 (429)
183 PRK10153 DNA-binding transcrip 97.4 0.0074 1.6E-07 61.7 16.8 134 471-608 332-483 (517)
184 PRK15363 pathogenicity island 97.4 0.0085 1.8E-07 49.2 13.7 95 477-574 36-133 (157)
185 PF10037 MRP-S27: Mitochondria 97.4 0.0015 3.2E-08 63.8 10.9 119 111-229 62-186 (429)
186 KOG1538 Uncharacterized conser 97.4 0.029 6.2E-07 56.0 19.0 257 273-572 554-845 (1081)
187 PF13431 TPR_17: Tetratricopep 97.4 0.00019 4.1E-09 42.1 2.8 33 567-599 2-34 (34)
188 PRK10803 tol-pal system protei 97.4 0.0018 3.9E-08 59.6 10.4 100 479-578 146-251 (263)
189 PF05843 Suf: Suppressor of fo 97.3 0.0028 6E-08 59.6 11.9 129 477-607 2-136 (280)
190 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0011 2.3E-08 64.1 8.9 65 543-607 74-141 (453)
191 KOG1130 Predicted G-alpha GTPa 97.3 0.0029 6.3E-08 59.3 11.3 130 477-606 196-343 (639)
192 PF08579 RPM2: Mitochondrial r 97.3 0.0035 7.5E-08 47.6 9.6 79 445-524 29-116 (120)
193 PF13414 TPR_11: TPR repeat; P 97.3 0.00068 1.5E-08 48.1 5.7 65 511-575 2-69 (69)
194 COG4700 Uncharacterized protei 97.3 0.0093 2E-07 49.7 12.6 110 499-608 76-190 (251)
195 CHL00033 ycf3 photosystem I as 97.3 0.0061 1.3E-07 52.5 12.6 99 479-577 38-153 (168)
196 PF13281 DUF4071: Domain of un 97.3 0.1 2.2E-06 50.2 21.2 166 410-578 141-339 (374)
197 PF06239 ECSIT: Evolutionarily 97.3 0.012 2.6E-07 50.8 13.5 113 272-401 44-165 (228)
198 PF13428 TPR_14: Tetratricopep 97.3 0.00056 1.2E-08 43.1 4.3 42 545-586 2-43 (44)
199 COG3898 Uncharacterized membra 97.1 0.24 5.2E-06 46.7 23.4 281 56-343 96-396 (531)
200 PF13424 TPR_12: Tetratricopep 97.1 0.00088 1.9E-08 48.9 4.9 62 545-606 6-74 (78)
201 PRK10803 tol-pal system protei 97.1 0.0095 2.1E-07 54.9 12.4 93 515-607 146-246 (263)
202 PF13371 TPR_9: Tetratricopept 97.1 0.0023 4.9E-08 46.0 6.8 65 520-584 3-69 (73)
203 KOG2796 Uncharacterized conser 97.1 0.045 9.7E-07 48.5 15.4 136 443-579 179-321 (366)
204 PF14938 SNAP: Soluble NSF att 97.1 0.018 3.8E-07 54.4 14.5 94 514-607 116-225 (282)
205 COG3898 Uncharacterized membra 97.1 0.28 6.1E-06 46.3 26.8 229 378-621 157-402 (531)
206 PF13525 YfiO: Outer membrane 96.9 0.027 5.9E-07 50.1 13.6 50 550-599 147-199 (203)
207 KOG2796 Uncharacterized conser 96.9 0.06 1.3E-06 47.7 14.8 130 478-608 179-316 (366)
208 PF04840 Vps16_C: Vps16, C-ter 96.9 0.41 9E-06 45.6 27.5 101 448-566 184-284 (319)
209 KOG0550 Molecular chaperone (D 96.9 0.45 9.8E-06 45.4 21.7 87 385-471 259-351 (486)
210 PF12688 TPR_5: Tetratrico pep 96.8 0.032 6.9E-07 44.2 11.6 92 447-538 7-101 (120)
211 PF03704 BTAD: Bacterial trans 96.8 0.0043 9.2E-08 52.0 7.2 68 546-613 64-136 (146)
212 PF13512 TPR_18: Tetratricopep 96.8 0.038 8.3E-07 44.6 11.7 88 520-607 18-128 (142)
213 PRK10866 outer membrane biogen 96.8 0.14 2.9E-06 47.0 16.9 187 49-241 37-237 (243)
214 KOG0543 FKBP-type peptidyl-pro 96.7 0.024 5.3E-07 53.7 11.9 94 513-606 258-354 (397)
215 PF06239 ECSIT: Evolutionarily 96.7 0.02 4.2E-07 49.6 10.1 89 438-527 44-153 (228)
216 PF09205 DUF1955: Domain of un 96.7 0.21 4.4E-06 39.3 14.8 141 451-610 12-152 (161)
217 PF13424 TPR_12: Tetratricopep 96.6 0.0036 7.8E-08 45.7 4.6 61 513-573 6-75 (78)
218 KOG1130 Predicted G-alpha GTPa 96.6 0.0099 2.1E-07 55.9 8.0 222 383-605 25-302 (639)
219 KOG2280 Vacuolar assembly/sort 96.6 1.2 2.6E-05 46.1 26.2 107 412-534 686-792 (829)
220 KOG1538 Uncharacterized conser 96.5 0.47 1E-05 47.9 19.5 88 374-470 746-846 (1081)
221 COG4235 Cytochrome c biogenesi 96.5 0.22 4.9E-06 45.6 15.7 105 473-579 153-262 (287)
222 PRK11906 transcriptional regul 96.4 0.07 1.5E-06 52.1 12.9 141 457-601 274-430 (458)
223 PF13525 YfiO: Outer membrane 96.4 0.17 3.7E-06 45.0 14.7 140 448-607 12-170 (203)
224 KOG0543 FKBP-type peptidyl-pro 96.3 0.015 3.3E-07 55.0 7.8 64 544-607 257-320 (397)
225 PF12921 ATP13: Mitochondrial 96.3 0.062 1.3E-06 43.0 10.2 52 471-522 47-98 (126)
226 KOG1585 Protein required for f 96.3 0.6 1.3E-05 41.2 16.5 200 377-601 33-250 (308)
227 KOG1258 mRNA processing protei 96.3 1.6 3.4E-05 44.2 29.8 180 409-592 296-489 (577)
228 PF07079 DUF1347: Protein of u 96.2 1.3 2.9E-05 42.9 35.5 192 376-570 299-521 (549)
229 KOG2114 Vacuolar assembly/sort 96.1 2.2 4.9E-05 44.8 22.5 170 19-206 341-515 (933)
230 COG3118 Thioredoxin domain-con 96.1 0.41 8.9E-06 43.7 15.1 119 486-607 144-265 (304)
231 KOG2041 WD40 repeat protein [G 96.0 2.2 4.8E-05 43.8 25.9 89 372-469 849-951 (1189)
232 COG4105 ComL DNA uptake lipopr 96.0 1.1 2.4E-05 40.3 20.7 63 549-612 172-237 (254)
233 KOG4555 TPR repeat-containing 96.0 0.042 9.1E-07 42.9 7.3 92 519-610 50-147 (175)
234 COG1729 Uncharacterized protei 96.0 0.093 2E-06 47.3 10.7 104 478-582 144-253 (262)
235 PF13512 TPR_18: Tetratricopep 96.0 0.27 5.9E-06 39.8 12.2 21 560-580 115-135 (142)
236 PRK15331 chaperone protein Sic 95.9 0.27 5.9E-06 40.8 12.3 88 483-572 44-133 (165)
237 COG1729 Uncharacterized protei 95.9 0.074 1.6E-06 47.9 9.7 93 514-607 144-244 (262)
238 PF10300 DUF3808: Protein of u 95.9 0.47 1E-05 48.3 16.8 161 443-606 190-375 (468)
239 KOG4555 TPR repeat-containing 95.9 0.077 1.7E-06 41.5 8.4 93 484-578 51-149 (175)
240 COG0457 NrfG FOG: TPR repeat [ 95.9 1.4 3E-05 40.1 26.9 215 390-606 38-264 (291)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.059 1.3E-06 52.5 9.4 63 511-573 74-141 (453)
242 PF13281 DUF4071: Domain of un 95.8 0.84 1.8E-05 44.1 17.0 162 445-607 145-334 (374)
243 KOG2280 Vacuolar assembly/sort 95.8 2.8 6.1E-05 43.5 26.3 108 477-600 685-792 (829)
244 PF04840 Vps16_C: Vps16, C-ter 95.7 2 4.4E-05 41.0 29.2 107 415-538 182-288 (319)
245 KOG2610 Uncharacterized conser 95.7 0.14 3.1E-06 47.1 10.4 160 452-614 114-283 (491)
246 COG3118 Thioredoxin domain-con 95.6 1.2 2.6E-05 40.8 16.0 150 449-600 142-294 (304)
247 smart00299 CLH Clathrin heavy 95.6 1.1 2.4E-05 36.9 15.2 127 443-589 9-136 (140)
248 KOG2610 Uncharacterized conser 95.5 0.37 7.9E-06 44.6 12.6 159 421-582 114-287 (491)
249 KOG3941 Intermediate in Toll s 95.5 0.23 4.9E-06 44.7 10.8 113 273-401 65-185 (406)
250 PF12921 ATP13: Mitochondrial 95.5 0.17 3.8E-06 40.5 9.4 78 476-553 2-97 (126)
251 PF07719 TPR_2: Tetratricopept 95.4 0.044 9.5E-07 31.9 4.6 32 546-577 3-34 (34)
252 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.8 6.1E-05 40.8 31.9 126 477-604 398-528 (660)
253 PF08631 SPO22: Meiosis protei 95.4 2.5 5.4E-05 39.8 21.9 128 286-437 4-148 (278)
254 PF03704 BTAD: Bacterial trans 95.4 0.18 3.8E-06 42.2 9.8 72 443-515 64-139 (146)
255 PF00515 TPR_1: Tetratricopept 95.2 0.042 9.2E-07 32.1 3.9 32 545-576 2-33 (34)
256 PF04184 ST7: ST7 protein; In 95.2 2.8 6.1E-05 41.5 17.9 103 476-578 259-380 (539)
257 KOG2114 Vacuolar assembly/sort 95.1 5.4 0.00012 42.2 26.2 54 517-571 710-763 (933)
258 KOG4234 TPR repeat-containing 94.9 0.11 2.4E-06 44.1 6.8 123 484-608 103-234 (271)
259 KOG1941 Acetylcholine receptor 94.7 0.63 1.4E-05 43.6 11.7 218 355-572 21-274 (518)
260 KOG1941 Acetylcholine receptor 94.7 2.1 4.5E-05 40.4 14.9 123 416-538 128-272 (518)
261 PF09205 DUF1955: Domain of un 94.7 1.3 2.7E-05 35.1 11.4 62 443-505 88-149 (161)
262 PF10300 DUF3808: Protein of u 94.6 0.6 1.3E-05 47.6 12.9 147 458-608 174-335 (468)
263 PF13176 TPR_7: Tetratricopept 94.5 0.082 1.8E-06 31.4 3.9 26 580-605 1-26 (36)
264 COG0457 NrfG FOG: TPR repeat [ 94.3 4 8.7E-05 36.9 25.9 200 375-576 59-268 (291)
265 PRK11906 transcriptional regul 94.2 2.7 5.9E-05 41.5 15.5 143 425-572 273-435 (458)
266 KOG1586 Protein required for f 94.2 2.5 5.4E-05 37.3 13.5 63 517-579 118-189 (288)
267 KOG0890 Protein kinase of the 94.1 13 0.00028 44.6 22.5 313 280-610 1388-1734(2382)
268 PF04053 Coatomer_WDAD: Coatom 94.1 1.2 2.6E-05 44.8 13.3 161 51-242 268-428 (443)
269 smart00299 CLH Clathrin heavy 94.1 2.9 6.3E-05 34.5 13.9 43 49-93 12-54 (140)
270 PF04053 Coatomer_WDAD: Coatom 94.0 1.4 3.1E-05 44.2 13.8 157 418-604 269-428 (443)
271 PF10345 Cohesin_load: Cohesin 94.0 10 0.00022 40.5 30.6 181 62-243 39-252 (608)
272 COG2976 Uncharacterized protei 93.7 4 8.8E-05 35.0 13.7 114 459-575 70-190 (207)
273 KOG3941 Intermediate in Toll s 93.5 0.86 1.9E-05 41.2 9.8 100 428-528 52-174 (406)
274 PRK11619 lytic murein transgly 93.5 12 0.00027 39.8 28.7 260 282-571 106-373 (644)
275 PF02259 FAT: FAT domain; Int 93.4 8.6 0.00019 37.7 22.7 150 439-591 144-305 (352)
276 PF04184 ST7: ST7 protein; In 93.4 2.9 6.4E-05 41.4 13.9 68 516-583 263-335 (539)
277 PF13181 TPR_8: Tetratricopept 93.3 0.17 3.7E-06 29.4 3.8 31 546-576 3-33 (34)
278 PF13176 TPR_7: Tetratricopept 93.2 0.16 3.4E-06 30.1 3.5 27 546-572 1-27 (36)
279 COG3629 DnrI DNA-binding trans 93.1 0.55 1.2E-05 43.3 8.4 60 513-572 154-215 (280)
280 COG4649 Uncharacterized protei 93.0 3.6 7.9E-05 34.4 11.9 130 441-572 59-195 (221)
281 COG4105 ComL DNA uptake lipopr 93.0 6.7 0.00015 35.5 18.7 62 517-578 172-238 (254)
282 COG1747 Uncharacterized N-term 93.0 11 0.00023 37.7 22.7 190 409-605 65-286 (711)
283 KOG1920 IkappaB kinase complex 92.9 18 0.00039 40.3 19.9 107 447-569 945-1051(1265)
284 PRK15180 Vi polysaccharide bio 92.8 2.1 4.5E-05 41.9 12.0 89 486-576 333-423 (831)
285 KOG1920 IkappaB kinase complex 92.7 3.5 7.5E-05 45.4 14.6 152 423-602 893-1050(1265)
286 PF02259 FAT: FAT domain; Int 92.7 5.8 0.00013 39.0 16.0 68 542-609 144-215 (352)
287 PF13170 DUF4003: Protein of u 92.5 3.8 8.2E-05 38.7 13.4 127 391-520 78-225 (297)
288 KOG4648 Uncharacterized conser 92.5 0.28 6.1E-06 45.4 5.6 96 483-581 104-202 (536)
289 PF09613 HrpB1_HrpK: Bacterial 92.3 1.1 2.4E-05 37.2 8.3 81 513-593 8-93 (160)
290 COG4785 NlpI Lipoprotein NlpI, 92.3 7.3 0.00016 34.1 14.2 27 580-606 239-265 (297)
291 TIGR02561 HrpB1_HrpK type III 92.0 1.1 2.4E-05 36.4 7.7 70 524-593 22-93 (153)
292 COG2976 Uncharacterized protei 92.0 2 4.4E-05 36.7 9.6 91 517-608 94-189 (207)
293 PF13428 TPR_14: Tetratricopep 92.0 0.28 6E-06 30.7 3.6 29 82-110 3-31 (44)
294 KOG4234 TPR repeat-containing 91.9 2.6 5.6E-05 36.2 10.1 91 449-543 103-200 (271)
295 PF07035 Mic1: Colon cancer-as 91.9 7.1 0.00015 33.0 14.4 31 296-326 15-45 (167)
296 PF13174 TPR_6: Tetratricopept 91.9 0.34 7.5E-06 27.7 3.8 28 549-576 5-32 (33)
297 PF07719 TPR_2: Tetratricopept 91.5 0.37 8.1E-06 27.8 3.7 29 579-607 2-30 (34)
298 PF00515 TPR_1: Tetratricopept 91.2 0.42 9.2E-06 27.7 3.7 29 579-607 2-30 (34)
299 PF09613 HrpB1_HrpK: Bacterial 91.1 2.6 5.7E-05 35.0 9.3 107 22-136 20-130 (160)
300 PF04097 Nic96: Nup93/Nic96; 90.6 27 0.00058 37.3 20.2 48 274-323 111-158 (613)
301 COG3629 DnrI DNA-binding trans 90.1 2 4.2E-05 39.7 8.6 78 217-319 154-236 (280)
302 PF13374 TPR_10: Tetratricopep 90.1 0.54 1.2E-05 28.8 3.7 28 579-606 3-30 (42)
303 KOG0545 Aryl-hydrocarbon recep 90.1 3.4 7.4E-05 36.7 9.4 61 546-606 232-292 (329)
304 PF02284 COX5A: Cytochrome c o 90.0 5.4 0.00012 30.1 9.0 57 530-586 28-87 (108)
305 PF10602 RPN7: 26S proteasome 89.9 3.3 7.1E-05 35.7 9.5 92 513-604 37-139 (177)
306 COG3947 Response regulator con 89.8 16 0.00035 33.6 15.1 60 546-605 281-340 (361)
307 PF07721 TPR_4: Tetratricopept 89.8 0.53 1.2E-05 25.3 2.9 24 579-602 2-25 (26)
308 KOG1585 Protein required for f 89.6 11 0.00024 33.7 12.1 171 412-608 33-220 (308)
309 PF10602 RPN7: 26S proteasome 89.5 5 0.00011 34.6 10.3 62 443-504 38-101 (177)
310 PRK15180 Vi polysaccharide bio 89.5 23 0.00051 35.0 27.3 123 91-215 300-425 (831)
311 COG4649 Uncharacterized protei 89.3 12 0.00027 31.5 15.1 118 420-538 68-193 (221)
312 PF06552 TOM20_plant: Plant sp 89.2 1.2 2.6E-05 37.6 5.9 33 560-592 51-83 (186)
313 PF13374 TPR_10: Tetratricopep 89.0 0.98 2.1E-05 27.5 4.3 28 545-572 3-30 (42)
314 PF08631 SPO22: Meiosis protei 88.9 21 0.00045 33.6 25.1 98 276-375 85-192 (278)
315 KOG1586 Protein required for f 88.7 17 0.00037 32.4 18.4 54 523-576 165-227 (288)
316 PF13181 TPR_8: Tetratricopept 88.7 1.1 2.3E-05 25.9 4.0 28 579-606 2-29 (34)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 88.2 3.1 6.7E-05 30.9 6.6 56 530-585 25-83 (103)
318 PF14853 Fis1_TPR_C: Fis1 C-te 88.1 2.3 4.9E-05 27.9 5.4 38 547-584 4-41 (53)
319 PF13170 DUF4003: Protein of u 87.9 25 0.00054 33.4 16.8 146 457-604 78-243 (297)
320 COG4455 ImpE Protein of avirul 87.9 2.3 5E-05 37.0 6.8 72 514-585 3-79 (273)
321 COG4785 NlpI Lipoprotein NlpI, 87.9 18 0.0004 31.8 15.3 179 388-574 78-267 (297)
322 TIGR03504 FimV_Cterm FimV C-te 87.9 1.1 2.4E-05 27.9 3.7 27 582-608 3-29 (44)
323 PF13174 TPR_6: Tetratricopept 87.8 0.78 1.7E-05 26.2 3.0 28 580-607 2-29 (33)
324 KOG4642 Chaperone-dependent E3 87.5 2.5 5.5E-05 37.4 6.9 80 525-604 23-104 (284)
325 PF00637 Clathrin: Region in C 87.3 2.2 4.7E-05 35.4 6.6 52 189-240 15-66 (143)
326 KOG2066 Vacuolar assembly/sort 87.1 45 0.00098 35.5 24.2 71 217-287 393-467 (846)
327 PF14561 TPR_20: Tetratricopep 86.7 2.7 5.8E-05 31.3 6.0 51 543-593 21-73 (90)
328 PF09986 DUF2225: Uncharacteri 86.6 5.8 0.00012 35.4 9.1 69 544-612 118-199 (214)
329 PF07035 Mic1: Colon cancer-as 86.1 20 0.00043 30.4 12.7 132 360-503 14-147 (167)
330 PRK12798 chemotaxis protein; R 86.1 36 0.00079 33.4 22.3 182 423-607 125-324 (421)
331 PRK10941 hypothetical protein; 86.0 4.3 9.3E-05 37.6 8.2 59 548-606 185-243 (269)
332 PF11207 DUF2989: Protein of u 86.0 5.2 0.00011 34.7 8.0 69 528-597 122-197 (203)
333 PF00637 Clathrin: Region in C 85.9 0.86 1.9E-05 37.8 3.4 85 85-172 12-96 (143)
334 KOG4570 Uncharacterized conser 85.8 6.9 0.00015 36.3 9.0 103 108-211 57-165 (418)
335 KOG4648 Uncharacterized conser 85.6 3 6.5E-05 38.9 6.8 87 448-545 104-199 (536)
336 COG4455 ImpE Protein of avirul 85.3 13 0.00028 32.7 9.9 52 484-537 9-60 (273)
337 smart00028 TPR Tetratricopepti 85.2 1.7 3.7E-05 24.0 3.7 25 581-605 4-28 (34)
338 TIGR02561 HrpB1_HrpK type III 85.1 19 0.00042 29.6 10.3 51 92-143 22-72 (153)
339 KOG4570 Uncharacterized conser 85.0 13 0.00028 34.7 10.3 102 304-405 58-165 (418)
340 COG2909 MalT ATP-dependent tra 84.5 66 0.0014 35.0 20.9 51 453-503 470-524 (894)
341 PF13431 TPR_17: Tetratricopep 84.4 0.95 2E-05 26.3 2.1 31 104-135 3-33 (34)
342 TIGR02508 type_III_yscG type I 84.4 12 0.00026 28.2 8.0 87 95-185 20-106 (115)
343 PF13929 mRNA_stabil: mRNA sta 84.3 10 0.00023 35.0 9.5 115 57-171 141-263 (292)
344 PF02284 COX5A: Cytochrome c o 83.5 17 0.00037 27.5 9.5 71 448-520 15-87 (108)
345 KOG0276 Vesicle coat complex C 83.1 29 0.00063 35.6 12.6 95 422-538 598-692 (794)
346 PF07721 TPR_4: Tetratricopept 82.7 1.1 2.4E-05 24.1 1.8 21 16-36 5-25 (26)
347 KOG1550 Extracellular protein 82.6 69 0.0015 33.8 16.7 15 391-405 228-242 (552)
348 PF13929 mRNA_stabil: mRNA sta 82.3 43 0.00092 31.2 19.7 119 348-466 134-263 (292)
349 PF06552 TOM20_plant: Plant sp 81.9 12 0.00026 31.9 8.3 64 539-609 63-138 (186)
350 KOG4507 Uncharacterized conser 81.7 6.2 0.00013 39.9 7.5 99 488-589 619-721 (886)
351 KOG1258 mRNA processing protei 81.7 68 0.0015 33.1 28.0 113 59-174 60-179 (577)
352 COG1747 Uncharacterized N-term 81.0 66 0.0014 32.5 22.4 176 372-554 63-249 (711)
353 KOG3364 Membrane protein invol 80.6 23 0.0005 28.5 8.8 73 509-581 29-108 (149)
354 cd00923 Cyt_c_Oxidase_Va Cytoc 80.6 22 0.00047 26.7 8.6 62 456-519 22-83 (103)
355 KOG0276 Vesicle coat complex C 80.4 12 0.00026 38.1 9.1 18 225-242 730-747 (794)
356 PRK10941 hypothetical protein; 80.4 12 0.00027 34.7 8.8 68 516-583 185-254 (269)
357 KOG1308 Hsp70-interacting prot 79.8 1.3 2.8E-05 41.4 2.3 85 525-609 127-213 (377)
358 smart00386 HAT HAT (Half-A-TPR 79.3 4.6 9.9E-05 22.6 3.9 30 558-587 1-30 (33)
359 PF11207 DUF2989: Protein of u 79.3 13 0.00028 32.4 7.9 42 93-134 153-197 (203)
360 PF10579 Rapsyn_N: Rapsyn N-te 79.2 8 0.00017 27.6 5.4 45 556-600 18-65 (80)
361 KOG2066 Vacuolar assembly/sort 78.5 1E+02 0.0022 33.1 24.7 48 117-164 394-441 (846)
362 smart00028 TPR Tetratricopepti 77.4 4.8 0.0001 22.0 3.7 31 545-575 2-32 (34)
363 KOG1550 Extracellular protein 76.2 1.1E+02 0.0024 32.3 23.4 212 390-608 308-539 (552)
364 PF08311 Mad3_BUB1_I: Mad3/BUB 76.1 24 0.00052 28.4 8.3 42 562-603 81-124 (126)
365 KOG1498 26S proteasome regulat 76.0 59 0.0013 31.6 11.7 213 388-628 25-262 (439)
366 PF13934 ELYS: Nuclear pore co 75.6 14 0.00031 33.3 7.7 103 49-160 81-186 (226)
367 PF13934 ELYS: Nuclear pore co 75.2 64 0.0014 29.2 12.1 33 523-555 151-183 (226)
368 KOG2396 HAT (Half-A-TPR) repea 75.1 99 0.0021 31.3 32.5 80 61-143 88-168 (568)
369 KOG4814 Uncharacterized conser 74.5 41 0.00088 34.9 10.8 89 522-610 364-460 (872)
370 COG0790 FOG: TPR repeat, SEL1 74.2 80 0.0017 29.9 17.4 82 387-471 53-143 (292)
371 KOG4077 Cytochrome c oxidase, 74.1 18 0.0004 28.5 6.6 48 538-585 78-125 (149)
372 PF12862 Apc5: Anaphase-promot 73.5 12 0.00025 28.2 5.7 52 555-606 9-69 (94)
373 TIGR02508 type_III_yscG type I 73.2 38 0.00082 25.6 9.7 86 391-480 21-106 (115)
374 KOG3807 Predicted membrane pro 72.9 30 0.00066 32.5 8.9 20 562-581 380-399 (556)
375 PF04910 Tcf25: Transcriptiona 72.7 1E+02 0.0022 30.3 14.1 59 548-606 107-167 (360)
376 KOG0890 Protein kinase of the 72.5 2.5E+02 0.0054 34.8 27.3 150 151-334 1388-1542(2382)
377 PF09477 Type_III_YscG: Bacter 72.2 28 0.00061 26.7 7.0 79 95-176 21-99 (116)
378 KOG0991 Replication factor C, 70.4 65 0.0014 28.9 9.8 44 137-181 230-273 (333)
379 KOG0376 Serine-threonine phosp 69.7 4.9 0.00011 39.7 3.4 101 482-585 10-113 (476)
380 KOG2063 Vacuolar assembly/sort 69.4 1.1E+02 0.0023 34.0 13.3 157 444-601 507-707 (877)
381 PF13762 MNE1: Mitochondrial s 69.0 58 0.0013 26.8 8.9 76 119-194 43-128 (145)
382 TIGR03504 FimV_Cterm FimV C-te 68.6 11 0.00024 23.5 3.7 26 280-305 4-29 (44)
383 KOG1464 COP9 signalosome, subu 68.0 99 0.0021 28.3 16.6 195 339-533 20-252 (440)
384 KOG0551 Hsp90 co-chaperone CNS 67.8 28 0.00061 32.9 7.5 87 518-604 87-179 (390)
385 KOG1464 COP9 signalosome, subu 66.9 1E+02 0.0023 28.2 19.9 251 287-568 39-327 (440)
386 PF10579 Rapsyn_N: Rapsyn N-te 66.8 18 0.00038 26.0 4.7 44 454-497 19-64 (80)
387 PRK09687 putative lyase; Provi 66.6 1.2E+02 0.0025 28.7 23.5 30 273-303 204-233 (280)
388 PF04190 DUF410: Protein of un 66.5 1.1E+02 0.0024 28.4 12.4 171 126-351 1-195 (260)
389 PF09670 Cas_Cas02710: CRISPR- 66.3 1.1E+02 0.0024 30.4 12.1 53 451-504 141-197 (379)
390 cd08819 CARD_MDA5_2 Caspase ac 65.7 51 0.0011 24.3 7.0 64 395-460 22-85 (88)
391 KOG3364 Membrane protein invol 65.6 31 0.00067 27.8 6.4 67 541-607 29-100 (149)
392 PRK13800 putative oxidoreducta 65.6 2.4E+02 0.0053 32.0 26.2 28 264-291 717-744 (897)
393 PRK09687 putative lyase; Provi 65.4 1.2E+02 0.0027 28.5 26.4 28 273-301 35-62 (280)
394 smart00777 Mad3_BUB1_I Mad3/BU 65.4 54 0.0012 26.3 7.9 40 563-602 82-123 (125)
395 PF12862 Apc5: Anaphase-promot 64.4 40 0.00086 25.3 6.9 51 523-573 9-70 (94)
396 PF04097 Nic96: Nup93/Nic96; 64.1 2.1E+02 0.0046 30.7 21.6 189 48-244 115-355 (613)
397 KOG0991 Replication factor C, 63.9 1.1E+02 0.0024 27.5 10.4 86 387-475 171-272 (333)
398 PF07163 Pex26: Pex26 protein; 63.9 92 0.002 28.9 9.8 85 415-499 88-181 (309)
399 KOG4077 Cytochrome c oxidase, 62.9 54 0.0012 26.0 7.1 58 460-519 68-125 (149)
400 PF11846 DUF3366: Domain of un 62.8 32 0.00069 30.2 7.1 37 539-575 139-175 (193)
401 PF11846 DUF3366: Domain of un 62.7 34 0.00074 30.0 7.2 31 473-503 141-171 (193)
402 PRK11619 lytic murein transgly 62.6 2.3E+02 0.0049 30.6 40.5 179 409-598 311-496 (644)
403 KOG4507 Uncharacterized conser 62.4 45 0.00097 34.2 8.3 132 474-608 569-706 (886)
404 PF14863 Alkyl_sulf_dimr: Alky 62.2 40 0.00088 27.7 6.9 64 528-594 57-120 (141)
405 PF13762 MNE1: Mitochondrial s 61.2 93 0.002 25.7 9.4 50 440-489 78-128 (145)
406 PF10366 Vps39_1: Vacuolar sor 60.2 79 0.0017 24.6 7.9 27 443-469 41-67 (108)
407 cd08819 CARD_MDA5_2 Caspase ac 60.1 42 0.00091 24.7 5.8 65 99-165 21-85 (88)
408 PF09477 Type_III_YscG: Bacter 59.0 81 0.0018 24.3 9.5 87 389-479 20-106 (116)
409 PF14853 Fis1_TPR_C: Fis1 C-te 59.0 22 0.00047 23.3 3.9 27 581-607 4-30 (53)
410 cd00280 TRFH Telomeric Repeat 58.0 81 0.0018 27.1 7.9 47 492-538 85-137 (200)
411 COG4976 Predicted methyltransf 57.7 21 0.00047 31.6 4.7 58 522-579 5-64 (287)
412 PF11838 ERAP1_C: ERAP1-like C 57.1 1.9E+02 0.004 27.9 19.0 81 492-572 146-229 (324)
413 KOG4279 Serine/threonine prote 56.5 2.8E+02 0.0062 29.8 16.1 55 520-584 352-406 (1226)
414 PF07720 TPR_3: Tetratricopept 56.5 40 0.00086 19.9 4.5 16 551-566 8-23 (36)
415 KOG2659 LisH motif-containing 55.9 1.5E+02 0.0033 26.5 10.9 63 473-538 23-90 (228)
416 PF10366 Vps39_1: Vacuolar sor 55.6 96 0.0021 24.1 8.0 29 275-303 39-67 (108)
417 PHA02875 ankyrin repeat protei 54.5 2.4E+02 0.0052 28.3 13.3 78 54-140 9-90 (413)
418 KOG3824 Huntingtin interacting 54.0 31 0.00067 32.1 5.3 60 523-582 127-188 (472)
419 PF14561 TPR_20: Tetratricopep 53.9 90 0.002 23.3 8.3 42 566-607 10-51 (90)
420 PF10345 Cohesin_load: Cohesin 53.6 3.2E+02 0.0068 29.4 36.2 184 421-605 372-604 (608)
421 COG4976 Predicted methyltransf 53.3 29 0.00063 30.9 4.8 56 485-543 4-61 (287)
422 KOG0687 26S proteasome regulat 53.1 2.1E+02 0.0046 27.3 10.4 113 491-605 83-208 (393)
423 COG2912 Uncharacterized conser 52.6 52 0.0011 30.3 6.5 56 550-605 187-242 (269)
424 PF04781 DUF627: Protein of un 52.4 1.1E+02 0.0024 23.8 7.4 42 562-603 62-103 (111)
425 PF07163 Pex26: Pex26 protein; 52.1 1.7E+02 0.0038 27.2 9.6 84 483-567 90-181 (309)
426 PF04762 IKI3: IKI3 family; I 50.4 2.2E+02 0.0047 32.4 12.2 83 217-303 813-900 (928)
427 COG5191 Uncharacterized conser 49.3 42 0.00092 31.3 5.4 80 507-586 102-184 (435)
428 PF12968 DUF3856: Domain of Un 49.2 1.3E+02 0.0029 23.8 8.7 61 544-604 55-126 (144)
429 KOG2581 26S proteasome regulat 48.8 1.9E+02 0.0041 28.5 9.7 136 441-576 124-279 (493)
430 COG3947 Response regulator con 48.6 2.4E+02 0.0051 26.5 14.7 55 480-536 283-337 (361)
431 PF11768 DUF3312: Protein of u 47.5 2.6E+02 0.0056 29.0 10.9 61 414-474 412-477 (545)
432 KOG2034 Vacuolar sorting prote 46.7 4.4E+02 0.0095 29.1 21.0 136 278-427 507-645 (911)
433 KOG0292 Vesicle coat complex C 46.6 28 0.0006 37.4 4.4 75 482-572 626-700 (1202)
434 PRK10564 maltose regulon perip 46.6 35 0.00076 31.9 4.6 44 273-316 254-298 (303)
435 COG5159 RPN6 26S proteasome re 46.4 2.5E+02 0.0054 26.2 14.2 191 382-572 10-234 (421)
436 COG4941 Predicted RNA polymera 45.8 2.8E+02 0.0061 26.6 11.8 118 457-579 272-400 (415)
437 KOG2422 Uncharacterized conser 45.2 3.8E+02 0.0082 28.0 14.2 216 386-606 249-515 (665)
438 PHA02875 ankyrin repeat protei 45.2 3.4E+02 0.0073 27.3 17.1 75 24-103 11-88 (413)
439 PF10255 Paf67: RNA polymerase 45.1 1.5E+02 0.0033 29.5 8.9 54 518-571 128-191 (404)
440 COG0735 Fur Fe2+/Zn2+ uptake r 44.8 1.4E+02 0.0031 24.7 7.6 64 167-231 7-70 (145)
441 PRK09857 putative transposase; 44.1 1.5E+02 0.0033 28.1 8.6 64 549-612 211-274 (292)
442 PRK13342 recombination factor 43.7 3.6E+02 0.0078 27.2 16.4 101 372-490 173-279 (413)
443 cd08812 CARD_RIG-I_like Caspas 43.7 24 0.00052 26.2 2.6 34 25-59 47-81 (88)
444 KOG0292 Vesicle coat complex C 43.5 3.5E+02 0.0076 29.8 11.5 156 381-572 626-781 (1202)
445 PF11848 DUF3368: Domain of un 43.3 86 0.0019 20.0 5.1 33 452-484 13-45 (48)
446 PF11817 Foie-gras_1: Foie gra 42.1 94 0.002 28.6 6.8 50 517-566 183-240 (247)
447 COG5159 RPN6 26S proteasome re 41.9 3E+02 0.0064 25.8 20.1 52 281-332 9-67 (421)
448 PF11817 Foie-gras_1: Foie gra 40.8 93 0.002 28.7 6.6 54 481-534 183-240 (247)
449 KOG0376 Serine-threonine phosp 40.8 56 0.0012 32.7 5.2 104 448-556 11-117 (476)
450 PF08311 Mad3_BUB1_I: Mad3/BUB 40.3 1.9E+02 0.0042 23.2 8.9 43 459-501 81-124 (126)
451 KOG4521 Nuclear pore complex, 39.8 2.5E+02 0.0053 32.0 10.0 81 82-163 985-1071(1480)
452 PF14689 SPOB_a: Sensor_kinase 39.1 67 0.0015 21.9 4.0 24 480-503 27-50 (62)
453 COG2909 MalT ATP-dependent tra 38.3 6E+02 0.013 28.2 27.5 183 355-538 473-685 (894)
454 PF14689 SPOB_a: Sensor_kinase 38.3 63 0.0014 22.0 3.8 24 515-538 26-49 (62)
455 cd00280 TRFH Telomeric Repeat 38.1 1.9E+02 0.0042 25.0 7.2 48 457-504 85-139 (200)
456 PF10255 Paf67: RNA polymerase 37.1 1.7E+02 0.0037 29.2 7.9 60 479-538 125-190 (404)
457 PF07575 Nucleopor_Nup85: Nup8 37.0 1.5E+02 0.0033 31.4 8.3 248 28-319 283-539 (566)
458 KOG2471 TPR repeat-containing 36.7 4.8E+02 0.01 26.7 11.0 219 385-614 27-273 (696)
459 COG5187 RPN7 26S proteasome re 36.6 2.1E+02 0.0045 26.8 7.6 105 499-605 102-219 (412)
460 KOG2422 Uncharacterized conser 36.6 5.2E+02 0.011 27.0 15.5 137 153-289 349-497 (665)
461 cd08789 CARD_IPS-1_RIG-I Caspa 36.1 46 0.001 24.4 3.0 42 20-63 40-81 (84)
462 KOG3824 Huntingtin interacting 35.9 65 0.0014 30.1 4.5 53 487-542 127-181 (472)
463 PF06957 COPI_C: Coatomer (COP 35.4 2.3E+02 0.0051 28.4 8.5 44 534-577 288-333 (422)
464 KOG4521 Nuclear pore complex, 35.2 7.6E+02 0.016 28.5 14.4 57 479-537 986-1046(1480)
465 PRK10564 maltose regulon perip 34.9 66 0.0014 30.2 4.5 38 148-185 259-296 (303)
466 PF08424 NRDE-2: NRDE-2, neces 34.5 4.3E+02 0.0094 25.5 13.2 114 458-574 48-184 (321)
467 PF04034 DUF367: Domain of unk 34.2 2.5E+02 0.0053 22.6 7.5 58 512-569 66-124 (127)
468 PF10516 SHNi-TPR: SHNi-TPR; 34.0 1E+02 0.0023 18.5 3.7 28 579-606 2-29 (38)
469 KOG2297 Predicted translation 33.9 4.1E+02 0.0089 25.2 9.1 21 441-461 321-341 (412)
470 KOG0403 Neoplastic transformat 33.7 5.1E+02 0.011 26.1 16.6 60 413-472 512-574 (645)
471 KOG2908 26S proteasome regulat 33.6 4.5E+02 0.0097 25.4 10.6 16 489-504 88-103 (380)
472 PF03745 DUF309: Domain of unk 33.5 1.4E+02 0.0031 20.3 4.9 35 54-89 9-43 (62)
473 COG4259 Uncharacterized protei 33.5 2.1E+02 0.0047 21.7 6.0 38 547-584 75-112 (121)
474 COG2912 Uncharacterized conser 33.1 1.3E+02 0.0029 27.8 6.0 64 518-581 187-252 (269)
475 PHA02537 M terminase endonucle 32.6 3.8E+02 0.0083 24.3 9.7 23 451-473 93-115 (230)
476 PF11663 Toxin_YhaV: Toxin wit 32.5 39 0.00085 27.2 2.3 33 156-190 105-137 (140)
477 PF04910 Tcf25: Transcriptiona 32.3 5E+02 0.011 25.6 17.0 28 409-436 39-66 (360)
478 PF11663 Toxin_YhaV: Toxin wit 32.3 59 0.0013 26.2 3.2 30 93-124 108-137 (140)
479 KOG1839 Uncharacterized protei 32.0 4.2E+02 0.009 30.8 10.5 152 451-602 942-1123(1236)
480 PRK06645 DNA polymerase III su 31.9 5E+02 0.011 27.1 10.7 28 152-180 264-291 (507)
481 PF04090 RNA_pol_I_TF: RNA pol 31.5 3.7E+02 0.0079 23.8 10.5 62 441-503 41-103 (199)
482 COG5191 Uncharacterized conser 31.3 1.3E+02 0.0028 28.4 5.5 70 540-609 103-173 (435)
483 PRK09462 fur ferric uptake reg 30.8 2.2E+02 0.0048 23.6 6.7 59 366-425 8-67 (148)
484 KOG0687 26S proteasome regulat 30.6 4.9E+02 0.011 25.0 12.6 142 439-585 68-223 (393)
485 KOG4567 GTPase-activating prot 30.6 4.8E+02 0.01 24.8 9.7 42 361-402 264-305 (370)
486 KOG2471 TPR repeat-containing 30.4 6.1E+02 0.013 26.0 14.3 43 548-590 339-381 (696)
487 KOG2300 Uncharacterized conser 29.6 6.3E+02 0.014 25.9 29.1 57 276-332 89-149 (629)
488 PF12926 MOZART2: Mitotic-spin 28.9 2.4E+02 0.0052 20.8 5.4 41 361-401 29-69 (88)
489 KOG2034 Vacuolar sorting prote 28.9 8.4E+02 0.018 27.1 24.7 78 17-108 363-444 (911)
490 COG0790 FOG: TPR repeat, SEL1 28.9 5E+02 0.011 24.4 18.4 16 390-405 92-107 (292)
491 KOG1839 Uncharacterized protei 28.5 3.4E+02 0.0073 31.4 9.1 121 486-607 942-1086(1236)
492 PRK11639 zinc uptake transcrip 28.5 2.4E+02 0.0051 24.1 6.6 68 61-129 7-74 (169)
493 KOG4279 Serine/threonine prote 28.2 3.4E+02 0.0074 29.3 8.5 100 443-545 203-321 (1226)
494 PF15297 CKAP2_C: Cytoskeleton 28.1 1.5E+02 0.0032 28.6 5.6 50 527-576 118-172 (353)
495 COG5108 RPO41 Mitochondrial DN 28.0 2.1E+02 0.0045 30.2 6.9 87 120-209 33-131 (1117)
496 PF09670 Cas_Cas02710: CRISPR- 28.0 6.1E+02 0.013 25.2 10.5 57 282-339 138-198 (379)
497 smart00638 LPD_N Lipoprotein N 27.9 7.6E+02 0.016 26.3 22.9 273 97-437 292-574 (574)
498 PF09454 Vps23_core: Vps23 cor 27.8 1.5E+02 0.0033 20.4 4.3 49 439-488 6-54 (65)
499 KOG4642 Chaperone-dependent E3 27.7 4.8E+02 0.01 23.9 10.6 15 556-570 90-104 (284)
500 KOG0545 Aryl-hydrocarbon recep 27.6 4.8E+02 0.011 23.9 10.0 68 515-582 233-302 (329)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-85 Score=714.18 Aligned_cols=612 Identities=34% Similarity=0.593 Sum_probs=592.4
Q ss_pred ccccchhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhc
Q 036704 13 RWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSS 92 (634)
Q Consensus 13 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (634)
..+..++.+|.+.|+++.|+++|+++++++..+|+ .++.+|++.|++++|+++|+.|... |+.||..||+.++++|+.
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n-~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN-VLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH-HHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCC
Confidence 45678899999999999999999999999999999 8999999999999999999999988 999999999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHH
Q 036704 93 LRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQM 172 (634)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 172 (634)
.+++..+.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHH
Q 036704 173 LQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGS 252 (634)
Q Consensus 173 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 252 (634)
.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..+|.++||.
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc---chHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCC
Q 036704 253 MIDGFSKL---DFARTVFNEME----SPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLS 325 (634)
Q Consensus 253 ll~~~~~~---~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 325 (634)
++.+|.+. ++|.++|++|. .||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.+|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 99999775 46999999885 499999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHhHHHh-----cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHH
Q 036704 326 LYQGMQIHSYIIKKGFYSNVPVCNAILQ-----HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCY 400 (634)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 400 (634)
+++|.++|+.|.+ ++..+|+.++. ++.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..
T Consensus 440 ~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 9999999999864 56778888883 389999999999986 5999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 036704 401 IMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLV 480 (634)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 480 (634)
+.+.|+.++..++++++.+|+++|++++|.++|+.+ .+|..+|++|+.+|+++|+.++|.++|++|.+.|+.||..||+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 560 (634)
.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999777999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCCccEEEeCCeEeeeccCCC
Q 036704 561 DVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIHASGNDIS 632 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 632 (634)
+.++.+.++++++.|+++..|..++++|.+.|+|++|.++.+.|++.|++++||+||+++.+++|.|.-++.
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~ 745 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDE 745 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999976653
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-72 Score=599.45 Aligned_cols=496 Identities=34% Similarity=0.589 Sum_probs=470.9
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHH
Q 036704 42 FDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHI 121 (634)
Q Consensus 42 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (634)
+...|+ .++.++.+.|++++|+++|++|....++.|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 86 ~~~~~~-~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLC-SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHH-HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345787 8999999999999999999999987567899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHh
Q 036704 122 LNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGR 201 (634)
Q Consensus 122 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (634)
+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHH
Q 036704 202 QLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTI 281 (634)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~l 281 (634)
+++..+.+.|+.||..++++|+++|++.|++++|.++|++|.+ +|+.+||+|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------------------------~~~vt~n~l 296 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----------------------------KTTVAWNSM 296 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------CChhHHHHH
Confidence 9999999999999999999999999999999999999988765 577889999
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHH
Q 036704 282 IAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFR 361 (634)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~ 361 (634)
|.+|++.|++++|+++|++|.+.|+.||
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd---------------------------------------------------- 324 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSID---------------------------------------------------- 324 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCC----------------------------------------------------
Confidence 9999999999999999999988776554
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCCh
Q 036704 362 LFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDV 441 (634)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 441 (634)
..||+.++.+|++.|+++.|.+++..|.+.|+.|+..++++++.+|+++|++++|.++|+.|.+||.
T Consensus 325 -------------~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 325 -------------QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred -------------HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 4555556666667777777788888888888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
.+|++||.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+.+|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999878999999999999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 036704 522 LARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
|++.|++++|.+++++++..|+..+|+.++.+|..+|+++.|..+++++.+..|++...|..++.+|++.|++++|.+++
T Consensus 472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcCCCCccEEEeCCeEeeeccCC
Q 036704 602 GSMKERGVRKVPGQSWIEIQTKIHASGNDI 631 (634)
Q Consensus 602 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 631 (634)
++|++.|+.+.||++|+++.+.+|.+..++
T Consensus 552 ~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 999999999999999999999999987654
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-72 Score=611.43 Aligned_cols=563 Identities=26% Similarity=0.436 Sum_probs=513.6
Q ss_pred CCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhh
Q 036704 40 RRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHN 119 (634)
Q Consensus 40 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (634)
.+.+..++ .++.++++.|++++|+.+|+.|.+. +++|+..+|..++.+|.+.+..+.+.+++..+.+.+..++...++
T Consensus 48 ~~~~~~~n-~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSN-SQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHH-HHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34455677 8999999999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchh
Q 036704 120 HILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGL 199 (634)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 199 (634)
.++.+|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhc---cchHHHHHhcCC----C
Q 036704 200 GRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSK---LDFARTVFNEME----S 272 (634)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~---~~~a~~~~~~~~----~ 272 (634)
+.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++|.++|.++||++|.+|.+ .++|..+|++|. .
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999976 456899999986 4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|+.|. .|+..+|+.++
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 46788899888
Q ss_pred h-----cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChH
Q 036704 353 Q-----HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLG 427 (634)
Q Consensus 353 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (634)
. +++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++++.+|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 4 38999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC
Q 036704 428 SARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG 507 (634)
Q Consensus 428 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 507 (634)
+|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+. |
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g 519 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-G 519 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-C
Confidence 999999999999999999999999999999999999999986 58999999999999999999999999999999876 8
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchhHHHHHH
Q 036704 508 IIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID-PTNSAALVLLCN 586 (634)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~ 586 (634)
+.++..++++|+++|+++|++++|.++|+.+ .||..+|+.++.+|.+.|+.++|.++|++|.+.. .+|..+|..++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 8887777777777777777777777777776 5677777777777777777777777777776532 225556666667
Q ss_pred HHHhcCChHHHHHHHHHHH-hCCCcCC
Q 036704 587 IYASSGKWEEVARLMGSMK-ERGVRKV 612 (634)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~-~~g~~~~ 612 (634)
+|++.|++++|.++|+.|. +.|+.|+
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 7777777777777777776 4566554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-66 Score=548.75 Aligned_cols=513 Identities=16% Similarity=0.233 Sum_probs=478.3
Q ss_pred CCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCC-CCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHH
Q 036704 75 NFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKC-QPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMI 153 (634)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 153 (634)
...++...|..++..+++.|+++.|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777899999999999999999999999999985 577888889999999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--CCCCCCHh
Q 036704 234 DAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGD--RELIPDGL 311 (634)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~ 311 (634)
+|.++|++|.+.+. .||..+|+.||.+|++.|++++|.++|.+|.. .|+.||..
T Consensus 525 eAl~lf~~M~~~Gv------------------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 525 KAFGAYGIMRSKNV------------------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred HHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 99999999987765 38999999999999999999999999999976 68999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh-----cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 036704 312 TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ-----HQAGELFRLFSLMLASQTKPDHITFNDVMGACA 386 (634)
Q Consensus 312 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 386 (634)
+|+.+|.+|++.|++++|.++|+.|.+.++.|+..+|+.++. +++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999993 389999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHH
Q 036704 387 AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME----DPDVVSWSSLIVGYAQFGCGEEALK 462 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~ 462 (634)
+.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|. .||..+|+.||.+|++.|++++|.+
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999995 5999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----c-------------
Q 036704 463 LFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR----A------------- 525 (634)
Q Consensus 463 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------------- 525 (634)
+|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+. |+.||..+|+.++..+.+ +
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999987 999999999999876432 1
Q ss_pred ------CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHhcCChH
Q 036704 526 ------GRVHEAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILK-IDPTNSAALVLLCNIYASSGKWE 595 (634)
Q Consensus 526 ------g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~ 595 (634)
+..++|..+|++| ++.||..+|+.++.++...+..+.+..+++.+.. ..+.+..+|+.++..+.+. .+
T Consensus 820 ~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~ 897 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DP 897 (1060)
T ss_pred ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hH
Confidence 2346799999999 8999999999999888888899999998887654 4566888999999987432 36
Q ss_pred HHHHHHHHHHhCCCcCCCC
Q 036704 596 EVARLMGSMKERGVRKVPG 614 (634)
Q Consensus 596 ~A~~~~~~~~~~g~~~~~~ 614 (634)
+|..++++|.+.|+.|+..
T Consensus 898 ~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 898 RAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHcCCCCCcc
Confidence 8999999999999987763
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7e-65 Score=541.36 Aligned_cols=490 Identities=20% Similarity=0.260 Sum_probs=364.4
Q ss_pred HHhhcCChHHHHHHhhcccCCCCccchH----HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCCh
Q 036704 21 AFELCMLLDQAGEVVDSFLRRFDDIWDF----DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSL 96 (634)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (634)
.+.+.|++++|.++|++|++++...|+. .++..|.+.|..++|+.+|+.|.. |+..+|+.++.+|++.|++
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCH
Confidence 3444577777777777776665444431 234456666777777777666642 6666777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCC----CCCccchHHHHHHHHhCCChhHHHHHHHHH
Q 036704 97 QLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMP----QRNVVSWTAMIAGCSQNGQENAAIELYVQM 172 (634)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 172 (634)
+.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777765 366677777777777777777777777777
Q ss_pred HHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHH--hcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchH
Q 036704 173 LQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIK--SEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSW 250 (634)
Q Consensus 173 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 250 (634)
.+.|+.||..||+.+|.+|++.|++++|.+++++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.+..
T Consensus 534 ~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~-- 611 (1060)
T PLN03218 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK-- 611 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--
Confidence 7777777777777777777777777777777777765 456677777777777777777777777777776665542
Q ss_pred HHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHH
Q 036704 251 GSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGM 330 (634)
Q Consensus 251 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 330 (634)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 612 ----------------------p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee-- 667 (1060)
T PLN03218 612 ----------------------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK-- 667 (1060)
T ss_pred ----------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH--
Confidence 66677777777777777777777777777777777777777777777777665555
Q ss_pred HHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCch
Q 036704 331 QIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDV 410 (634)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 410 (634)
|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 668 ----------------------------A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 668 ----------------------------AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred ----------------------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 4555555566667888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 411 FVMNGLMDMYVKCGSLGSARELFNFME----DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
.+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.+.|.+++++|.+.|+.||..+|+.++..|
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888888888888888886 3888888888888888888888888888888888888888888887654
Q ss_pred cc----c-------------------CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CC
Q 036704 487 SH----V-------------------GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM---AF 540 (634)
Q Consensus 487 ~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 540 (634)
.+ . +..+.|..+|++|.+. |+.||..+|+.++.++.+.+..+.+..+++.| +.
T Consensus 800 ~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~ 878 (1060)
T PLN03218 800 LRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD 878 (1060)
T ss_pred HHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence 32 1 1246789999999987 99999999999998888889999999999888 45
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 541 DDDIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.|+..+|+.++.++.+. .++|..++++|.+
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 56788999999987432 3689999999987
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-55 Score=468.02 Aligned_cols=456 Identities=14% Similarity=0.170 Sum_probs=393.4
Q ss_pred cccchhhHHhhcCChHHHHHHhhcccC-----CCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 036704 14 WCCEYWDAFELCMLLDQAGEVVDSFLR-----RFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLIS 88 (634)
Q Consensus 14 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 88 (634)
.++..+..|.+.|++++|.++|+.+.. ++...|+ .++.++.+.++.+.|.+++..|.+. |+.||..+|+.++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~-~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYD-ALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHH
Confidence 345668889999999999999998863 3445677 8899999999999999999999998 99999999999999
Q ss_pred HhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCC----CCCccchHHHHHHHHhCCChhH
Q 036704 89 ACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMP----QRNVVSWTAMIAGCSQNGQENA 164 (634)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 164 (634)
.|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.++++.|+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999995 5899999999999999999999999999996 4889999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCC
Q 036704 165 AIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIAR 244 (634)
Q Consensus 165 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 244 (634)
+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|++++|.++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999885 57899999999999999999999999999987
Q ss_pred CCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCC
Q 036704 245 KDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPL 324 (634)
Q Consensus 245 ~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 324 (634)
.+. .||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|
T Consensus 319 ~g~------------------------~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 319 SGV------------------------SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374 (697)
T ss_pred cCC------------------------CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC
Confidence 765 38999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHhHHHh-----cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHH
Q 036704 325 SLYQGMQIHSYIIKKGFYSNVPVCNAILQ-----HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHC 399 (634)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 399 (634)
++++|.++|+.|. .++..+|+.++. ++.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 375 ~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 375 RMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred CHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999998875 356667777773 2777777777777777777777777777777777777777777777
Q ss_pred HHHH-hCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CH
Q 036704 400 YIMK-TGLALDVFVMNGLMDMYVKCGSLGSARELFNFME-DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NH 476 (634)
Q Consensus 400 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~ 476 (634)
.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. +|+..+|++|+.+|..+|+++.|..+++++.+. .| +.
T Consensus 451 ~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~ 528 (697)
T PLN03081 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKL 528 (697)
T ss_pred HHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCC
Confidence 7764 5777777777777777777777777777777775 577777777777777777777777777777644 34 35
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
.+|..++..|++.|++++|.++++.|.+. |+..
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 67777777777777777777777777766 6543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-33 Score=313.80 Aligned_cols=578 Identities=11% Similarity=0.003 Sum_probs=483.0
Q ss_pred cchhhHHhhcCChHHHHHHhhcccCCCCccch--HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhcc
Q 036704 16 CEYWDAFELCMLLDQAGEVVDSFLRRFDDIWD--FDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSL 93 (634)
Q Consensus 16 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (634)
..++..+...|++++|.+.|++..+.+|.... ..+...+.+.|++++|+..++.+... .+.+...+..+...+.+.
T Consensus 299 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 376 (899)
T TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL--DPDDPAALSLLGEAYLAL 376 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHC
Confidence 45678899999999999999988765444322 14566688999999999999999874 455677889999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHH
Q 036704 94 RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYV 170 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 170 (634)
|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++.+.+ .+...+..++..+.+.|++++|..+++
T Consensus 377 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 455 (899)
T TIGR02917 377 GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998875 55677888888999999999999999988764 233466678889999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCc---
Q 036704 171 QMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDI--- 247 (634)
Q Consensus 171 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--- 247 (634)
.+... .+++..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+.++
T Consensus 456 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 456 KLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred HHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence 99875 35677889999999999999999999999998764 33456778899999999999999999998875433
Q ss_pred chHHHHHHHh---hccchHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhc
Q 036704 248 TSWGSMIDGF---SKLDFARTVFNEMES---PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACT 321 (634)
Q Consensus 248 ~~~~~ll~~~---~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 321 (634)
.++..+...+ ++.+.|...++++.. .+...+..++..+...|++++|..+++.+... .+.+..++..+..++.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 4455555544 445668888877643 45677888999999999999999999999765 3556788999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCCCChhHHhHHH-----hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHH
Q 036704 322 SPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL-----QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQ 396 (634)
Q Consensus 322 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 396 (634)
..|++++|...++.+.+.... +...+..+. .+++++|...++++.+.. +.+..++..+...+...|++++|..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999876432 222222211 349999999999998754 4557789999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 036704 397 LHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP 474 (634)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 474 (634)
+++.+.+.+.. +...+..+...+.+.|++++|.+.|+.+. .|+..++..+...+...|++++|.+.++++.+.. +.
T Consensus 691 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 691 IAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 99999887643 77788888999999999999999999876 3666788889999999999999999999999874 44
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLA 552 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 552 (634)
+...+..+...|...|++++|.+.|+++.+. .+++...++.+...+...|+ .+|++.++++ ...| ++.++..++.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 6888889999999999999999999999864 35577888999999999999 8899999988 4444 5677888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+...|++++|.+.++++++..|.++.++..++.++.+.|++++|.+++++|++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.8e-33 Score=310.14 Aligned_cols=581 Identities=13% Similarity=0.019 Sum_probs=485.3
Q ss_pred cchhhHHhhcCChHHHHHHhhcccCCCCccchH--HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhcc
Q 036704 16 CEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDF--DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSL 93 (634)
Q Consensus 16 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (634)
...+..+...|++++|.+.|++..+.++..... .+...+...|++++|...|+.+.+. .+.+...+..+...+...
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~ 342 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRL 342 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHC
Confidence 345667788999999999999887666554331 2344578899999999999999875 455667788888999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHH
Q 036704 94 RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYV 170 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 170 (634)
|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...|+++.+ .+...+..+...+...|++++|.+.++
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 99999999999998775 56778899999999999999999999998764 345577788888999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcc--
Q 036704 171 QMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDIT-- 248 (634)
Q Consensus 171 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-- 248 (634)
.+.+... ........++..+.+.|++++|..+++.+... .+.+..++..+..++...|++++|...|+++.+.++.
T Consensus 422 ~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 499 (899)
T TIGR02917 422 TAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF 499 (899)
T ss_pred HHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Confidence 9987642 23345566778889999999999999998875 3456788999999999999999999999987654433
Q ss_pred -hHHHHHHHh---hccchHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhc
Q 036704 249 -SWGSMIDGF---SKLDFARTVFNEMES---PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACT 321 (634)
Q Consensus 249 -~~~~ll~~~---~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 321 (634)
.+..+...+ ++.+.|...++++.. .+..++..+...+.+.|+.++|..++.++...+ +.+...+..+...+.
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHH
Confidence 333343333 456668888887753 467789999999999999999999999987653 345667788889999
Q ss_pred CCCChHHHHHHHHHHHHhCCCCChhHHhHHH-----hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHH
Q 036704 322 SPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL-----QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQ 396 (634)
Q Consensus 322 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 396 (634)
..|+++.|..+++.+.+... .+...+..+. .+++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999987543 2333333332 349999999999998764 4466788889999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 036704 397 LHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR 473 (634)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 473 (634)
+++++.+.... +...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|...++++... .
T Consensus 657 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 733 (899)
T TIGR02917 657 SLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--A 733 (899)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 99999987643 678889999999999999999999999874 45667888899999999999999999999987 4
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 036704 474 PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLL 551 (634)
Q Consensus 474 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~ 551 (634)
|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ..++++.++..++
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 811 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA 811 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56578888999999999999999999999864 4557888899999999999999999999998 3345788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
..+...|+ ++|+..++++++..|+++..+..++.++.+.|++++|.++++++.+.+..
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999 88999999999999999999999999999999999999999999987643
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=6.2e-25 Score=245.94 Aligned_cols=406 Identities=11% Similarity=0.029 Sum_probs=305.7
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcc-----hHHHHHH-------
Q 036704 188 IRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDIT-----SWGSMID------- 255 (634)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ll~------- 255 (634)
...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|++..+.++. .|..++.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345668899999999999998864 336778888999999999999999999887754432 1222221
Q ss_pred --------HhhccchHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCC
Q 036704 256 --------GFSKLDFARTVFNEMES---PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-GLTVRSLLCACTSP 323 (634)
Q Consensus 256 --------~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 323 (634)
..++.++|...|++... .+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-h
Confidence 11345567888776654 45667888899999999999999999998865 343 445555555553 4
Q ss_pred CChHHHHHHHHHHHHhCCC----------CCh--hHHhHHH-hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcccc
Q 036704 324 LSLYQGMQIHSYIIKKGFY----------SNV--PVCNAIL-QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMAS 390 (634)
Q Consensus 324 g~~~~a~~~~~~~~~~~~~----------~~~--~~~~~ll-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 390 (634)
++.++|...++.+...... .+. .....+. .+++++|.+.+++..+.. +-+...+..+...+.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 5778888877654332110 000 0111122 349999999999998864 3345677788899999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC----Ch---------hhHHHHHHHHHhcCCh
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP----DV---------VSWSSLIVGYAQFGCG 457 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~ 457 (634)
+++|...++++.+.... +...+..+...+...++.++|...++.+... +. ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999999876543 4555555556677889999999999988632 11 1123456678899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
++|..+++. .+++...+..+...+.+.|++++|...|+++.+. -+.+...+..++..|...|++++|++.++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999872 2445667788889999999999999999999964 233577888999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 538 M-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS------AALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 538 ~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
. ...| +...+..+..++...|++++|.+++++++...|+++ .++..++.++...|++++|+..+++.+.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8 4444 566778888899999999999999999998776544 3666778999999999999999998863
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.6e-24 Score=239.87 Aligned_cols=580 Identities=12% Similarity=0.051 Sum_probs=405.8
Q ss_pred chhhHHhhcCChHHHHHHhhcccCCCCccch--HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccH-----------
Q 036704 17 EYWDAFELCMLLDQAGEVVDSFLRRFDDIWD--FDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTY----------- 83 (634)
Q Consensus 17 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------- 83 (634)
.-+..+...++.+.|.+.++++...+|+.-. ..++..+.+.|+.++|...++++.+. .|+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHhcC
Confidence 3477788899999999999998755544332 25566788999999999999999975 3333322
Q ss_pred ------HHHHHHhhccCChhHHHHHHHHHHHcCCCCCcch-hhHHHHHHHccCChHHHHHHhccCCC--C-CccchHHHH
Q 036704 84 ------ADLISACSSLRSLQLGRKVHDHILSSKCQPDAVL-HNHILNMYGKCGSLEDARMVFDEMPQ--R-NVVSWTAMI 153 (634)
Q Consensus 84 ------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 153 (634)
..+.+.+.+.|++++|.+.|+.+.+.+ +|+... ...........|+.++|.+.++++.+ | +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 333456788999999999999998765 444321 11112222346999999999999875 3 445777888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC----------------Chh---hHHHHHHHhhcCCCchhHhHHHHHHHHhcCCC
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMP----------------DQF---TFGSIIRACSGLCCVGLGRQLHAHVIKSEHGS 214 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p----------------~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 214 (634)
..+...|+.++|+..++++....... +.. .+...+..+-.....+.+...+.........|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 89999999999999999987642100 000 11111111222222334444554443333333
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhccCCCCc---chHHHHHHHh---hccchHHHHHhcCCC--CCh---hhHH----
Q 036704 215 HLISQNALIAMYTKFDRILDAWNVFSSIARKDI---TSWGSMIDGF---SKLDFARTVFNEMES--PNL---ASWN---- 279 (634)
Q Consensus 215 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~---~~~~~a~~~~~~~~~--~~~---~~~~---- 279 (634)
+.. .......+...|++++|+..|++..+.++ ..+..+-..+ ++.++|...|++..+ |+. ..|.
T Consensus 269 ~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 269 AFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred chH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 322 12345677889999999999998876544 3444444444 445567777776553 322 1121
Q ss_pred --------HHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhH---H
Q 036704 280 --------TIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPV---C 348 (634)
Q Consensus 280 --------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~ 348 (634)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+......... .
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22346678899999999999887752 23455666777888889999999999998887643322111 1
Q ss_pred hHHHhcCHhHHHHHHHHHHHCCCC--------CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036704 349 NAILQHQAGELFRLFSLMLASQTK--------PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMY 420 (634)
Q Consensus 349 ~~ll~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (634)
......+.++|...++.+...... .....+..+...+...|++++|...++++.+..+. +...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 112233677888777664332100 01123455667788899999999999999987655 667778888999
Q ss_pred hhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHhcc
Q 036704 421 VKCGSLGSARELFNFMED--P-DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV---------TLVGVLTACSH 488 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~ 488 (634)
.+.|++++|...++++.+ | +...+..+...+...++.++|+..++++......++.. .+......+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999998753 3 34445555556677899999999988865443222221 22345667888
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
.|+.++|.++++. .+.+...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998771 2345566778999999999999999999998 4455 678999999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 567 AENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
++++.+..|+++.++..++.++.+.|++++|.++++++.....
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999999999999999999999999999999999999987543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=8.2e-23 Score=218.20 Aligned_cols=558 Identities=9% Similarity=-0.034 Sum_probs=364.1
Q ss_pred HhhcCChHHHHHHhhcccCCCCccch--HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHH
Q 036704 22 FELCMLLDQAGEVVDSFLRRFDDIWD--FDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLG 99 (634)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (634)
+...|++++|...|+...+.+|.... +.+...|.+.|+.++|...+++..+. .|+...|..++..+ +++++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhH
Confidence 44459999999999998876665422 35677799999999999999999974 45555555544333 899999
Q ss_pred HHHHHHHHHcCCCCCcchhhHHHHH--------HHccCChHHHHHHhccCCCCC--ccchHHH-HHHHHhCCChhHHHHH
Q 036704 100 RKVHDHILSSKCQPDAVLHNHILNM--------YGKCGSLEDARMVFDEMPQRN--VVSWTAM-IAGCSQNGQENAAIEL 168 (634)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~a~~~ 168 (634)
..+++++.+.. |-+..++..+... |.+.+...++++ .....|+ ....... ...|.+.|++++|+++
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999986 5566777777766 777766666666 3333343 4434444 8899999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhhc-CCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCC--
Q 036704 169 YVQMLQSGLMPDQFTFGSIIRACSG-LCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARK-- 245 (634)
Q Consensus 169 ~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 245 (634)
++++.+.+. .+..-...+-.++.. .++ +.+..++.. .+..+......+...|.+.|+.++|.+.++++...
T Consensus 205 L~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 999999863 344445556666666 366 667666442 34467889999999999999999999999988643
Q ss_pred ---CcchHHHHHHHhhcc------------------------------c---hHHHHHhcCCCCChhhHHHHHHHH--Hc
Q 036704 246 ---DITSWGSMIDGFSKL------------------------------D---FARTVFNEMESPNLASWNTIIAGV--AS 287 (634)
Q Consensus 246 ---~~~~~~~ll~~~~~~------------------------------~---~a~~~~~~~~~~~~~~~~~li~~~--~~ 287 (634)
+..+|--.+.-+... + .+.++ .... |.... ..++.. ..
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~--~~~r~~~~~~ 354 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL-LATL-PANEM--LEERYAVSVA 354 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcCC-CcchH--HHHHHhhccc
Confidence 222332222222111 0 02222 1111 21111 122211 12
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHh-C-CCCChhHHhHHH-------------
Q 036704 288 CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKK-G-FYSNVPVCNAIL------------- 352 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll------------- 352 (634)
.+...++...+..|.+.. +-+....-.+.......|+.++|.+++...... + ...+......+.
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 244555555555554431 112333333333344566666666666655542 1 111111111111
Q ss_pred -----------------hcCH---hHHHHHHHHHHHCCCCC--CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCch
Q 036704 353 -----------------QHQA---GELFRLFSLMLASQTKP--DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDV 410 (634)
Q Consensus 353 -----------------~~~~---~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 410 (634)
.++. ..+...+....... ++ +...+..+..++.. ++.++|...+.+..... |+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cch
Confidence 1111 11222222222211 23 45566666666665 78888888777777655 344
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 036704 411 FVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH 488 (634)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 488 (634)
.....+...+...|++++|...|+++.. |+...+..+...+.+.|+.++|...+++..+.. +++...+..+......
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 3333445555688889999888887653 444556667777888888888998888888764 2233333344444455
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
.|++++|...+++..+ ..|+...+..+..++.+.|++++|+..+++. ...| +...+..+..++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6889999988888874 4567778888888888899999999888887 5555 566777888888888899999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 567 AENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++++++..|+++.++..++.++...|++++|+..+++..+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999989988888899999999999999999888888754
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.3e-22 Score=189.38 Aligned_cols=381 Identities=14% Similarity=0.112 Sum_probs=267.0
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhH-HHHHHHHH
Q 036704 148 SWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLIS-QNALIAMY 226 (634)
Q Consensus 148 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~ 226 (634)
+|+.+...+-..|++++|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+-..+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 45555555555555555555555555432 112344555555555555555555555554443 222221 12223333
Q ss_pred HhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 036704 227 TKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDREL 306 (634)
Q Consensus 227 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (634)
-..|++++|...+.+..+.++ -=...|+.|...+-..|+...|+..|++..+-
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp-------------------------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-- 247 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQP-------------------------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-- 247 (966)
T ss_pred HhhcccchhHHHHHHHHhhCC-------------------------ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--
Confidence 345666666666655444322 12345666777777777777777777766543
Q ss_pred CCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 036704 307 IPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKP-DHITFNDVMGA 384 (634)
Q Consensus 307 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~ 384 (634)
.|+ ...|..|-..|...+.++.|...+...... .| ....+..+...
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------------------------------rpn~A~a~gNla~i 295 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------------------------------RPNHAVAHGNLACI 295 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------------------------------CCcchhhccceEEE
Confidence 343 233444444444444444444433333221 34 34567777778
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEAL 461 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 461 (634)
|-..|.++.|+..+++.++..+. -+..|+.+..++-..|++.+|.+.|+.... ....+.+.|...|...|.++.|.
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH
Confidence 88899999999999998876544 467899999999999999999999998764 44568899999999999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 462 KLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 462 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
.+|....+- .|. ....+.|...|-++|++++|+..|++.. .+.|+ ...++.+...|-..|+.+.|.+.+.+.
T Consensus 375 ~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 375 RLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 999998875 565 6778899999999999999999999998 67886 567899999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 539 AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 539 ~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
.+.|. ...++.|...|...|+..+|+..|+.++++.|+.+.++-.++.++--..+|.+
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 77775 56889999999999999999999999999999999999999877654444443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.7e-19 Score=193.00 Aligned_cols=571 Identities=11% Similarity=-0.012 Sum_probs=390.7
Q ss_pred cccccchhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHH--
Q 036704 12 PRWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISA-- 89 (634)
Q Consensus 12 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~-- 89 (634)
|.++..++.+|...|++++|+..+++..+.+|....+..+.+ .-+++++|..+++++... .|-+..++..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La--~i~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~ 153 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA--AIPVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEV 153 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH--HhccChhHHHHHHHHHHh--CCCChhHHHHHHHHhh
Confidence 566778899999999999999999998877775433233223 228899999999999875 44445555555554
Q ss_pred ------hhccCChhHHHHHHHHHHHcCCCCCcchhhHH-HHHHHccCChHHHHHHhccCCCCC---ccchHHHHHHHHh-
Q 036704 90 ------CSSLRSLQLGRKVHDHILSSKCQPDAVLHNHI-LNMYGKCGSLEDARMVFDEMPQRN---VVSWTAMIAGCSQ- 158 (634)
Q Consensus 90 ------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~- 158 (634)
|.+. +.|.+.++ .......|.+.+.... .+.|.+.|++++|+.+++++.+.+ ......|-.+|..
T Consensus 154 ~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 154 GQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAG 229 (987)
T ss_pred ccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 4443 55555555 3322223344444444 788888888888888888876532 2234455556666
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCC-CCh---------------------
Q 036704 159 NGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHG-SHL--------------------- 216 (634)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--------------------- 216 (634)
.++ +++..+++. .++-+......+...+.+.|+.++|..+++++...... |+.
T Consensus 230 l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 230 QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 355 666666442 23356667777888888888888888777665432111 111
Q ss_pred ---------hHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHh-----hccchHHHHHhcCCC--C-ChhhHH
Q 036704 217 ---------ISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGF-----SKLDFARTVFNEMES--P-NLASWN 279 (634)
Q Consensus 217 ---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~-----~~~~~a~~~~~~~~~--~-~~~~~~ 279 (634)
.....++..+.+.++++.++++.. ....++ ...+... .+..++...++.|-+ | +....-
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~ 380 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE---MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLD 380 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch---HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHH
Confidence 122234677888888887776643 222222 1122221 223344444444443 2 444444
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhC-C-CCCCHhHHHHHHHHhcCCCCh---HHHHHH----------------------
Q 036704 280 TIIAGVASCSNANEAMSLFSEMGDR-E-LIPDGLTVRSLLCACTSPLSL---YQGMQI---------------------- 332 (634)
Q Consensus 280 ~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~g~~---~~a~~~---------------------- 332 (634)
.+.-...+.|+.++|.++|...... + ..++.....-++..+.+.+.+ ..+..+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 4555667889999999999998662 1 333444555677777766552 222222
Q ss_pred HHHHHH-hCCCCC---hh----HHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh
Q 036704 333 HSYIIK-KGFYSN---VP----VCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT 404 (634)
Q Consensus 333 ~~~~~~-~~~~~~---~~----~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 404 (634)
...... .+..|+ .. ....+..++.++|...+.+.... .|+......+...+...|++++|...++++...
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 111111 122233 11 22233345778899977777665 466555445556667899999999999997654
Q ss_pred CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 036704 405 GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSS---LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVG 481 (634)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 481 (634)
+|+...+..+..++.+.|+.++|...++...+.++..... +.......|++++|...+++..+. .|+...+..
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~ 614 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVA 614 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 3344455667788899999999999999887533333333 333344559999999999999987 567888999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 558 (634)
+..++.+.|++++|...+++... ..| +...+..+..++...|++++|++.+++. ...| +...+..+..++...|
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999985 345 5667788888999999999999999998 5555 6789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 559 NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++++|+..++++++..|++..+....+++..+..+++.|.+-+++.-..+
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999888765543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=9.3e-21 Score=179.67 Aligned_cols=423 Identities=12% Similarity=0.113 Sum_probs=337.0
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCCCCcc-c--hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcC
Q 036704 118 HNHILNMYGKCGSLEDARMVFDEMPQRNVV-S--WTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGL 194 (634)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 194 (634)
...|..-..+.|++++|++....+-+.|.. + .-.+-..+.+..+++....--....+. .+--..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 344555566788999998877766543222 1 111223455555555544433322222 244568899999999999
Q ss_pred CCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCC
Q 036704 195 CCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPN 274 (634)
Q Consensus 195 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 274 (634)
|+++.|..+++.+++... .....|..+..++...|+.+.|...|.+..+-++..
T Consensus 130 g~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l------------------------- 183 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL------------------------- 183 (966)
T ss_pred chHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch-------------------------
Confidence 999999999999998642 246788899999999999999999999887766421
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ 353 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (634)
.-..+.+...+-..|+.++|...|-+..+. .|. ...|+.|...+-..|+...|++.|++.++.
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-------------- 247 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-------------- 247 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------------
Confidence 112233444455679999999999887765 454 355777878888889888888888877764
Q ss_pred cCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 036704 354 HQAGELFRLFSLMLASQTKPD-HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAREL 432 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (634)
.|+ ...|-.|-..|...+.++.|...+.++....+. ....+..+...|...|.++.|++.
T Consensus 248 ------------------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 248 ------------------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred ------------------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHH
Confidence 343 347888888999999999999999888765533 566677788889999999999999
Q ss_pred HhcCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 433 FNFMED--PDV-VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 433 ~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
|++..+ |+. ..|+.|..++-..|++.+|...|.+.... .|+ ....+.|...+...|.++.|..+|..... +
T Consensus 309 Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v 383 (966)
T KOG4626|consen 309 YKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---V 383 (966)
T ss_pred HHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---h
Confidence 999874 553 48999999999999999999999999886 455 78889999999999999999999999884 5
Q ss_pred CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 509 IPT-RERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 509 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
.|. ....+.|...|..+|++++|+..+++. .++|+ ...++.+...|...|+.+.|++.+.+++..+|.-+.+++.|+
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 564 567889999999999999999999998 88896 569999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 036704 586 NIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.+|-..|+..+|++-++..+.-
T Consensus 464 si~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999998763
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.2e-20 Score=185.90 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=178.2
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC------hhhHHHHHH
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PD------VVSWSSLIV 449 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~ 449 (634)
+..+...+...|+++.|..+++++.+... .+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 44445555555666666666666554322 2445556666666666666666666665542 11 113456677
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVH 529 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 529 (634)
.+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++... +......++..++.+|.+.|+++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHH
Confidence 7888899999999999988763 224567777888899999999999999998854 22222456788899999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---cCChHHHHHHHHHHH
Q 036704 530 EAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS---SGKWEEVARLMGSMK 605 (634)
Q Consensus 530 ~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 605 (634)
+|.+.++++ ...|+...+..++..+.+.|++++|..+++++++..|++... ..+...+.. .|+.++|..+++++.
T Consensus 267 ~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~-~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF-HRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH-HHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999998 556777777889999999999999999999999999987754 444444443 468999999999999
Q ss_pred hCCCcCCCCc----------cEEEeCCeEeeec
Q 036704 606 ERGVRKVPGQ----------SWIEIQTKIHASG 628 (634)
Q Consensus 606 ~~g~~~~~~~----------~~~~~~~~~~~~~ 628 (634)
++++.++|+. .|.-....|++++
T Consensus 346 ~~~~~~~p~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 346 GEQLKRKPRYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred HHHHhCCCCEECCCCCCCCccceeECcCCCCcc
Confidence 9999999863 4555666555543
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.7e-18 Score=170.86 Aligned_cols=572 Identities=12% Similarity=0.067 Sum_probs=414.3
Q ss_pred hHHHHHHhhcccCCCCccchHHHHHH--HHhcCChHHHHHHHHHhhhc-CCCCCCcccHHHHHHHhhccCChhHHHHHHH
Q 036704 28 LDQAGEVVDSFLRRFDDIWDFDLFSS--LCKQNLYNEALVAFDFLQNN-TNFRIRPSTYADLISACSSLRSLQLGRKVHD 104 (634)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (634)
++.|.+.|....+.+|+..-+-+.++ ....+++..|+.+|..+... +..+||+. ..+..++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 59999999999988888777444455 44678999999999987653 33445543 334455678899999999999
Q ss_pred HHHHcCCCCCcchhhHHHHHHHcc---CChHHHHHHhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 036704 105 HILSSKCQPDAVLHNHILNMYGKC---GSLEDARMVFDEMP---QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLM 178 (634)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (634)
+..+.+ |-++.++-.|.-.-... ..+..+..++...- ..|++..+.|...|...|++..++.+...+......
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 999875 33444443333332222 23455555555443 367888999999999999999999999998875311
Q ss_pred --CChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHH---HH
Q 036704 179 --PDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWG---SM 253 (634)
Q Consensus 179 --p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l 253 (634)
.-...|-.+.+++-..|++++|...|.+..+....--...+-.|...|.+.|+++.+...|+.+....+..+- .+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 2234577888999999999999999988877643333445567889999999999999999998765443222 22
Q ss_pred HHHhh-------ccchHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHH----hhCCCCCCHhHHHHHHHH
Q 036704 254 IDGFS-------KLDFARTVFNEMES---PNLASWNTIIAGVASCSNANEAMSLFSEM----GDRELIPDGLTVRSLLCA 319 (634)
Q Consensus 254 l~~~~-------~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~ 319 (634)
-..|. +.+.|..+..+..+ .|...|-.+...+....-+.. +..|... ...+-.+.+...|.+...
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 22222 23567777776665 456677777777666555444 6666543 455666888899999999
Q ss_pred hcCCCChHHHHHHHHHHHHh---CCCCChh-------HHhHHH--h--cCHhHHHHHHHHHHHCCCCCCHh-HHHHHHHH
Q 036704 320 CTSPLSLYQGMQIHSYIIKK---GFYSNVP-------VCNAIL--Q--HQAGELFRLFSLMLASQTKPDHI-TFNDVMGA 384 (634)
Q Consensus 320 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~-------~~~~ll--~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~ 384 (634)
....|+++.|...|...... ...++.. -||... . ++.+.|.+.|..+... .|+-+ .|..+...
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~m 539 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCM 539 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHH
Confidence 99999999999999988775 2233331 233322 2 2788899999998876 46544 34444434
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHh------
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME-----DPDVVSWSSLIVGYAQ------ 453 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------ 453 (634)
....+...+|...++.+....-. ++..++.+...+.+...+..|.+-|+.+. .+|..+.-.|.+.|..
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 44557788899999988866533 66677777778888888888888666554 2455555556665442
Q ss_pred ------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 454 ------FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 454 ------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
.+..++|+++|.+..+.. +-|...-+.+.-.++..|++..|..+|.++.+. ......+|-.+..+|..+|+
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHH
Confidence 234578889998888774 336777788888899999999999999999975 33345567789999999999
Q ss_pred hHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh-------------
Q 036704 528 VHEAEDFINQM----AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS------------- 590 (634)
Q Consensus 528 ~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~------------- 590 (634)
+-.|++.|+.. ..+.+..+++.|.+++...|++.+|.+.+..+....|.++.....++.+..+
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 99999999987 3345788999999999999999999999999999999999887777665432
Q ss_pred ------cCChHHHHHHHHHHHhCCC
Q 036704 591 ------SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 591 ------~g~~~~A~~~~~~~~~~g~ 609 (634)
.+..+.|.++|+.|...+-
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2345677788887776543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=3e-18 Score=180.58 Aligned_cols=418 Identities=13% Similarity=0.049 Sum_probs=285.1
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 036704 149 WTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTK 228 (634)
Q Consensus 149 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 228 (634)
+......+.+.|+++.|+..|++..+. .|+...|..+..++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566788889999999999988764 5777888888888889999999999999888764 2345677888889999
Q ss_pred cCChhHHHHHHhccCCCCcchH---HHHHHH-hhc--cchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 036704 229 FDRILDAWNVFSSIARKDITSW---GSMIDG-FSK--LDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMG 302 (634)
Q Consensus 229 ~g~~~~A~~~~~~~~~~~~~~~---~~ll~~-~~~--~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 302 (634)
.|++++|..-|..+...+.... ..++.. +.+ ...+...++.-+ ++...+..+.. +...........-+.+-.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 9999999887765432221100 000000 000 000111111110 11111111111 111000111100000000
Q ss_pred hCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHH----HhcCHhHHHHHHHHHHHCC-CCC-CHh
Q 036704 303 DRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAI----LQHQAGELFRLFSLMLASQ-TKP-DHI 376 (634)
Q Consensus 303 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~a~~~~~~~~~~~-~~~-~~~ 376 (634)
+ ..+.... .....+... ..+.+++|.+.|+...+.+ ..| ...
T Consensus 285 ~--~~~~~~~------------------------------~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~ 332 (615)
T TIGR00990 285 E--LDEETGN------------------------------GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI 332 (615)
T ss_pred c--ccccccc------------------------------chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHH
Confidence 0 0000000 000000000 0126778888888887754 233 345
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHh
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQ 453 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 453 (634)
.+..+...+...|++++|...+++..+.... ....|..+...+...|++++|...|+...+ .+...|..+...+..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6777888888999999999999999877543 466788888899999999999999998753 446788889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAED 533 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 533 (634)
.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++.... .+.+...++.+..++...|++++|++
T Consensus 412 ~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred cCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999874 335677788888999999999999999999853 33457788889999999999999999
Q ss_pred HHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 534 FINQM-AFDDDI-------V-VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 534 ~~~~~-~~~~~~-------~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
.|++. ...|+. . .++.....+...|++++|.+.++++++.+|++..++..++.++.+.|++++|.+.+++.
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99987 433321 1 12222233445799999999999999999999999999999999999999999999998
Q ss_pred HhC
Q 036704 605 KER 607 (634)
Q Consensus 605 ~~~ 607 (634)
.+.
T Consensus 569 ~~l 571 (615)
T TIGR00990 569 AEL 571 (615)
T ss_pred HHH
Confidence 764
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.2e-18 Score=174.41 Aligned_cols=298 Identities=13% Similarity=0.025 Sum_probs=180.1
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCCh
Q 036704 156 CSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH---LISQNALIAMYTKFDRI 232 (634)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 232 (634)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445566666666666666543 22334555566666666666666666666655432211 23566677778888888
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH--
Q 036704 233 LDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG-- 310 (634)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 310 (634)
++|..+|+++.+.++ ++..+++.++..+.+.|++++|.+.++.+.+.+..+..
T Consensus 124 ~~A~~~~~~~l~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (389)
T PRK11788 124 DRAEELFLQLVDEGD-------------------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE 178 (389)
T ss_pred HHHHHHHHHHHcCCc-------------------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence 888888877765433 45667778888888888888888888887765432221
Q ss_pred --hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc
Q 036704 311 --LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAM 388 (634)
Q Consensus 311 --~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 388 (634)
..+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------------------p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAAD-------------------------------PQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-------------------------------cCCHHHHHHHHHHHHHC
Confidence 122334444455555555555444443321 22234555566666777
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVSWSSLIVGYAQFGCGEEALKLFRR 466 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 466 (634)
|++++|.++++++.+.+......+++.++.+|.+.|++++|...++.+. .|+...+..++..+.+.|++++|..++++
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7777777777777665443334455666666777777777777666654 25555556666666677777777777766
Q ss_pred HHhCCCCCCHHHHHHHHHHhcc---cCCHHHHHHHHHHHHHHhCCCCChh
Q 036704 467 MRSSGVRPNHVTLVGVLTACSH---VGLVEEGLQLYRIMQNEYGIIPTRE 513 (634)
Q Consensus 467 m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 513 (634)
+.+. .|+..++..++..+.. .|+.+++..+++++.++ ++.|++.
T Consensus 308 ~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 308 QLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 6654 4666666666555443 34666666666666655 5555444
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=2e-17 Score=177.36 Aligned_cols=187 Identities=10% Similarity=0.057 Sum_probs=111.1
Q ss_pred hhcCChHHHHHHHhcCCCCC--hh--hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHhcccCCHH
Q 036704 421 VKCGSLGSARELFNFMEDPD--VV--SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP---NHVTLVGVLTACSHVGLVE 493 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~ 493 (634)
...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|+++.+..... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 34456666666666655311 11 11113445666666666666666655432110 1223444455556666666
Q ss_pred HHHHHHHHHHHHhC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036704 494 EGLQLYRIMQNEYG----------IIPT---RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 494 ~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 558 (634)
+|.++++.+..... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..++..+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 66666666654210 0112 123345566667777777777777776 3233 5667777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 559 NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+.++|++.++++++..|++..++...+..+.+.|++++|+.+++++.+.
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777777777653
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=3.9e-17 Score=171.41 Aligned_cols=354 Identities=12% Similarity=0.021 Sum_probs=196.9
Q ss_pred ccCChHHHHHHhccCCC------CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhH
Q 036704 127 KCGSLEDARMVFDEMPQ------RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLG 200 (634)
Q Consensus 127 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 200 (634)
+..+|+..--.|...++ .+......++..+.+.|+++.|..+++........ +...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHH
Confidence 44555555555554442 12223344556667777777777777777665322 223333444444556677777
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHH
Q 036704 201 RQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNT 280 (634)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (634)
...++.+.+..+ .+...+..+...+...|++++|...+++..+.++ .+...+..
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-------------------------~~~~a~~~ 149 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-------------------------GNSQIFAL 149 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------CcHHHHHH
Confidence 766666665532 2334555566666666666666666666544332 34555666
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHH
Q 036704 281 IIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELF 360 (634)
Q Consensus 281 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~ 360 (634)
+...+...|++++|...++.+.... |+...
T Consensus 150 la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~------------------------------------------------ 179 (656)
T PRK15174 150 HLRTLVLMDKELQAISLARTQAQEV--PPRGD------------------------------------------------ 179 (656)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC--CCCHH------------------------------------------------
Confidence 6666666666666666666554331 11111
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--
Q 036704 361 RLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-- 438 (634)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 438 (634)
.+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++...+
T Consensus 180 ----------------a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 180 ----------------MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred ----------------HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 11111 12334455555555555544433222333333334455555666666655555442
Q ss_pred -CChhhHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-Ch
Q 036704 439 -PDVVSWSSLIVGYAQFGCGEE----ALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TR 512 (634)
Q Consensus 439 -~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~ 512 (634)
.+...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...++++... .| +.
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~ 318 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLP 318 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH
Confidence 223345555666666666654 666777766652 223556666677777777777777777776643 33 34
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIV-VWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
..+..+..++.+.|++++|.+.++++ ...|+.. .+..+..++...|+.++|...|+++++..|++.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 45556667777777777777777766 3445432 333345566777777777777777777777653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=7.1e-17 Score=173.21 Aligned_cols=417 Identities=9% Similarity=-0.023 Sum_probs=250.2
Q ss_pred CCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHH
Q 036704 77 RIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMI 153 (634)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 153 (634)
+.++....-.+.+....|+.++|.+++.+..... +.+...+..+...+.+.|++++|..++++..+ .+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3444444555555566666666666666655422 33344455666666666666666666665332 2334455555
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
..+...|++++|...+++..+.. +.+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 66666666666666666666542 22333 555555566666666666666666665422 3344455666777778888
Q ss_pred HHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHH-----cCCCh---hHHHHHHHHHhhC-
Q 036704 234 DAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVA-----SCSNA---NEAMSLFSEMGDR- 304 (634)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~- 304 (634)
+|...++.... ++..... + .......++.... ..+++ ++|++.++.+.+.
T Consensus 168 ~Al~~l~~~~~-~p~~~~~-l-------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRD-L-------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred HHHHHHHhCCC-CHHHHHH-H-------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 88888776654 2110000 0 0000111111111 11112 3444444444322
Q ss_pred CCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 036704 305 ELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHI-TFNDVMG 383 (634)
Q Consensus 305 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~ 383 (634)
...|+. .|... .....+.
T Consensus 227 ~~~p~~-------------------------------------------------------------~~~~~~a~~d~l~ 245 (765)
T PRK10049 227 HDNPDA-------------------------------------------------------------TADYQRARIDRLG 245 (765)
T ss_pred ccCCcc-------------------------------------------------------------chHHHHHHHHHHH
Confidence 111110 00000 0011122
Q ss_pred HhhccccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC-----hhhHHHHHHHHHhcC
Q 036704 384 ACAAMASLEMGTQLHCYIMKTGLA-LDVFVMNGLMDMYVKCGSLGSARELFNFMED--PD-----VVSWSSLIVGYAQFG 455 (634)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~ 455 (634)
.+...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+ |. ......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 334557777777777777766532 221 222245677777888888888777643 21 123455566777888
Q ss_pred ChHHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGV-----------RPNH---VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
++++|..+++.+.+... .|+. ..+..+...+...|++++|++.++++... .+.+...+..+...
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l 402 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASV 402 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 88888888888776521 2332 34556777888999999999999999863 34467788899999
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 522 LARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
+...|++++|++.+++. ...|+ ...+...+..+...|++++|+.+++++++..|+++.+..
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999998 55664 667777788889999999999999999999999885444
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.4e-16 Score=158.14 Aligned_cols=516 Identities=15% Similarity=0.095 Sum_probs=310.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcC--CCCCcchhhHHHHHHHccCChHHHHH
Q 036704 59 LYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSK--CQPDAVLHNHILNMYGKCGSLEDARM 136 (634)
Q Consensus 59 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 136 (634)
+.+.|...|....++ .+++.-.+.--.......+++..|+.+|...+... .+||+.+ .+..++.+.|+.+.|+.
T Consensus 145 ~~~~A~a~F~~Vl~~--sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQ--SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred cHHHHHHHHHHHHhh--CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 368999999999885 55554444444444556789999999999977654 3455443 34456679999999999
Q ss_pred HhccCCCCCccchHHHHHHHH---h---CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHh
Q 036704 137 VFDEMPQRNVVSWTAMIAGCS---Q---NGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKS 210 (634)
Q Consensus 137 ~~~~~~~~~~~~~~~li~~~~---~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (634)
.|+...+.|+..-++++.... . ...+..+..++...-..+ .-++...+.|-+.+.-.|++..+..+...+...
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999998877665555543321 1 234455666665554432 345667788888899999999999999988876
Q ss_pred cCCC--ChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcC
Q 036704 211 EHGS--HLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASC 288 (634)
Q Consensus 211 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 288 (634)
-... -...|--+.++|-..|++++|...|.+..+.+... -+..+--+...+.+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~------------------------~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN------------------------FVLPLVGLGQMYIKR 355 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC------------------------ccccccchhHHHHHh
Confidence 5221 23457778999999999999999998876654321 123334455566666
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCC----ChHHHHHHHHHHHHhCCCCChhHHh----HHHhcCHhHHH
Q 036704 289 SNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPL----SLYQGMQIHSYIIKKGFYSNVPVCN----AILQHQAGELF 360 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~a~ 360 (634)
|+.+.+...|+...+. .+-+..|...+.+.|+..+ ..+.|..++....+.-. .+...|- .+.+.+.-.++
T Consensus 356 ~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~~~sL 433 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDPWASL 433 (1018)
T ss_pred chHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcChHHHH
Confidence 6666666666665543 1222344444444444433 23333333333333221 1111111 11122222223
Q ss_pred HHHH----HHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh---CCCCch------hHHHHHHHHHhhcCChH
Q 036704 361 RLFS----LMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT---GLALDV------FVMNGLMDMYVKCGSLG 427 (634)
Q Consensus 361 ~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~ 427 (634)
..|. .+...+-.+.+...|.+.......|+++.|...+...... ...++. .+--.+...+-..++++
T Consensus 434 ~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 434 DAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 3322 2233333455555555555555666666666555555433 111111 11111222333333444
Q ss_pred ----------------------------------HHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 428 ----------------------------------SARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSS 470 (634)
Q Consensus 428 ----------------------------------~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 470 (634)
+|...++.+.+ .++..++.+...+.+...+..|.+-|....+.
T Consensus 514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 44444444332 34444544555555555566666555544432
Q ss_pred C-CCCCHHHHHHHHHHhccc------------CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 471 G-VRPNHVTLVGVLTACSHV------------GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 471 ~-~~p~~~~~~~l~~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
- ..+|..+...|.+.|... +..++|+++|.++.+ ..+.+...-|-+.-+++..|++.+|..+|.+
T Consensus 594 ~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 1 124555555555544321 345677777777774 2334667777788888889999999999988
Q ss_pred C--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 538 M--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKI-DP-TNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 538 ~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
. .......+|-.++.+|...|++..|+++|+..++. .+ +++.+...|+.++.+.|.+.+|.+.+......
T Consensus 672 VrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 672 VREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 8 22335568888889999999999999999988873 33 47778888999999999999998888777654
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5.7e-17 Score=170.12 Aligned_cols=230 Identities=12% Similarity=-0.002 Sum_probs=188.0
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC----ChhhHHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP----DVVSWSSLIV 449 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~ 449 (634)
+...+..+...+...|++++|...++.+......+.. .+..+ ..+.+.|++++|...++.+.+. +...+..+..
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD 220 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 4456677778888999999999999888776654333 33333 3478899999999999987642 2334455677
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHH----HHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE----GLQLYRIMQNEYGIIP-TRERRSCVVDLLAR 524 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 524 (634)
.+...|++++|...++++.+.. +.+...+..+...+...|++++ |...++++... .| +...+..+...+.+
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHH
Confidence 8899999999999999999874 3357778888999999999986 89999999853 44 56788899999999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.|++++|+..+++. ...| +...+..+..++...|++++|+..++++.+..|.++..+..++.++...|++++|...++
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998 4455 566788889999999999999999999999999988777778889999999999999999
Q ss_pred HHHhCCC
Q 036704 603 SMKERGV 609 (634)
Q Consensus 603 ~~~~~g~ 609 (634)
++.+...
T Consensus 377 ~al~~~P 383 (656)
T PRK15174 377 HYIQARA 383 (656)
T ss_pred HHHHhCh
Confidence 9887543
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=4.9e-16 Score=163.91 Aligned_cols=256 Identities=12% Similarity=0.012 Sum_probs=196.6
Q ss_pred CCChhHHHHHHHHHhhCC-CCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRE-LIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSL 365 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~ 365 (634)
.+++++|.+.|+.....+ ..|+ ...+..+...+...|++++|...++..++..
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~------------------------- 361 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD------------------------- 361 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence 467889999998887764 2343 3456666666777887777777776666532
Q ss_pred HHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-Chh
Q 036704 366 MLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVV 442 (634)
Q Consensus 366 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~ 442 (634)
+-....|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...|+...+ | +..
T Consensus 362 ------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 362 ------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred ------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 223457777888888999999999999999877543 677888889999999999999999998764 3 455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-h-------H
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-E-------R 514 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~-------~ 514 (634)
.+..+...+.+.|++++|+..+++..+.. +.+...+..+...+...|++++|.+.|++.... .|+. . .
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l 510 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHH
Confidence 67778888999999999999999988763 334778888899999999999999999998753 3321 1 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
++.....+...|++++|.+++++. ...| +...+..++..+...|++++|++.|+++.++.+....
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 222223344579999999999986 5556 4557888999999999999999999999998776443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.2e-15 Score=160.39 Aligned_cols=443 Identities=9% Similarity=0.044 Sum_probs=261.4
Q ss_pred hhccCChhHHHHHHHHHHHcCCCCC-cchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHH---HHHHHhCCChhHH
Q 036704 90 CSSLRSLQLGRKVHDHILSSKCQPD-AVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAM---IAGCSQNGQENAA 165 (634)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a 165 (634)
..+.|+++.|...|++..+.. +-+ +.++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 445555555555555555443 111 1222 455555555555555555555554433322222 2244445666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCC
Q 036704 166 IELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARK 245 (634)
Q Consensus 166 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 245 (634)
+++|+++.+.. +-+...+..++..+...++.++|+..++.+.... |+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 66666655542 1223333344444455555555555555554432 22333333333333344444455555555544
Q ss_pred CcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCC
Q 036704 246 DITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLS 325 (634)
Q Consensus 246 ~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 325 (634)
++ .+...+..++.++.+.|-...|.++..+-... + +......+-
T Consensus 199 ~P-------------------------~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~-------- 242 (822)
T PRK14574 199 AP-------------------------TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLE-------- 242 (822)
T ss_pred CC-------------------------CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHH--------
Confidence 33 24445555556666666666666555442110 0 011110000
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHC-CCCCC-Hh----HHHHHHHHhhccccHHHHHHHHH
Q 036704 326 LYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLAS-QTKPD-HI----TFNDVMGACAAMASLEMGTQLHC 399 (634)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~-~~~~~-~~----~~~~ll~~~~~~~~~~~a~~~~~ 399 (634)
.+.+ ...++....++..--.. -...+.|+.-++.+... +..|. .. ...-.+-++...++..++++.++
T Consensus 243 ~~~~----a~~vr~a~~~~~~~~~r--~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 243 RDAA----AEQVRMAVLPTRSETER--FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHH----HHHHhhcccccccchhh--HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0000 00011110000000000 00234455555555441 11122 11 22234457788899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 400 YIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP---------DVVSWSSLIVGYAQFGCGEEALKLFRRMRSS 470 (634)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 470 (634)
.+...+.+....+-.++.++|...++.++|..++..+..+ +......|.-+|...+++++|..+++.+.+.
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9998887777788889999999999999999999987532 2223467888999999999999999999873
Q ss_pred CC-----------CCC---HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036704 471 GV-----------RPN---HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFIN 536 (634)
Q Consensus 471 ~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (634)
-. .|| ...+..++..+...|++.+|++.++++.. .-+-|..+...+.+.+...|++.+|++.++
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 21 132 23345567778899999999999999975 344588888999999999999999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 537 QM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 537 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
.. ...| +..+....+.++...|++++|..+.+.+.+..|+++.+-
T Consensus 475 ~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 475 AVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 77 5556 456777888888999999999999999999999988543
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=2e-15 Score=137.66 Aligned_cols=424 Identities=16% Similarity=0.168 Sum_probs=290.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccC--C-hhHHHHHHHHHHHcCCCCCcchhhHHHHHHHc
Q 036704 51 FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLR--S-LQLGRKVHDHILSSKCQPDAVLHNHILNMYGK 127 (634)
Q Consensus 51 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (634)
+..+..++..+++.-+|+.|.+. +++.+...-..|++.-+-.+ + +-.-++.|-.|.+.| ..+..+| +
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K 191 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------K 191 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------c
Confidence 44567788888999999999887 88877776666654433222 2 222334455565555 2333333 4
Q ss_pred cCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHH
Q 036704 128 CGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHV 207 (634)
Q Consensus 128 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (634)
.|.+.+ ++-+....+..+|.+||.++|+--..+.|.+++++-.....+.+..+||.+|.+.+- ....+++.+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EM 264 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEM 264 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHH
Confidence 455544 444455567789999999999999999999999999988889999999999987543 3348899999
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHc
Q 036704 208 IKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVAS 287 (634)
Q Consensus 208 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 287 (634)
....+.||..|+|+++++..+.|+++.|.
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar--------------------------------------------------- 293 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDAR--------------------------------------------------- 293 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------------------------------
Confidence 99999999999999999999999888764
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHH-HHHHHHHHHH----hCCCCChhHHhHHHhcCHhHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQ-GMQIHSYIIK----KGFYSNVPVCNAILQHQAGELFRL 362 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~a~~~ 362 (634)
..|.+++.+|++-|+.|...+|..+|..+++.++..+ +..++..+.. ..++|-
T Consensus 294 ----~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~------------------ 351 (625)
T KOG4422|consen 294 ----KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI------------------ 351 (625)
T ss_pred ----HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC------------------
Confidence 3567888899999999999999999988888776643 3333333332 112221
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHhhcCChHHHHHHHhc
Q 036704 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT----GLALD---VFVMNGLMDMYVKCGSLGSARELFNF 435 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (634)
.+.|...|...|..|.+..+.+.|.++..-.... -+.|+ ..-|..+..+.|.....+.-...|+.
T Consensus 352 --------~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 352 --------TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred --------CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334556788888888888988888887766521 12222 22355677778888888888888888
Q ss_pred CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC-CH--------HH-----HHH
Q 036704 436 MED----PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG-LV--------EE-----GLQ 497 (634)
Q Consensus 436 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~--------~~-----a~~ 497 (634)
|.. |+..+...++++....|.++-.-++|..++..|...+.....-++..+++.. ++ .. |..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 873 7888888888888888888888888888888875555544444444444433 11 00 111
Q ss_pred HH-------HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 036704 498 LY-------RIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-------AFDDDIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 498 ~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a 563 (634)
++ .++. ....+....+.+.-.+.+.|+.++|.+++.-. +..|....+-.++.......+...|
T Consensus 504 ~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 504 IKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 11 1122 22334555666777777888888888877655 2223333444555556667777777
Q ss_pred HHHHHHHHhcCC
Q 036704 564 KRAAENILKIDP 575 (634)
Q Consensus 564 ~~~~~~~~~~~p 575 (634)
..+++-+...+-
T Consensus 581 ~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 581 IEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHcCc
Confidence 777777766443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.3e-14 Score=152.57 Aligned_cols=433 Identities=9% Similarity=0.033 Sum_probs=306.2
Q ss_pred HHHHccCChHHHHHHhccCCCCCcc---chHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh---HHHHHHHhhcCCC
Q 036704 123 NMYGKCGSLEDARMVFDEMPQRNVV---SWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFT---FGSIIRACSGLCC 196 (634)
Q Consensus 123 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~ 196 (634)
-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+... ...+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 3456889999999999998753322 23388888889999999999999887 243322 2333456778899
Q ss_pred chhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChh
Q 036704 197 VGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLA 276 (634)
Q Consensus 197 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~ 276 (634)
+++|..+++++.+....- ...+..++..+...++.++|++.++++...++ +..
T Consensus 118 yd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--------------------------~~~ 170 (822)
T PRK14574 118 WDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDP--------------------------TVQ 170 (822)
T ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--------------------------chH
Confidence 999999999999876443 56666888899999999999999999877654 444
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCH
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQA 356 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 356 (634)
.+-.++..+...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++...-.. ...-.....-..
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~------~f~~~~~~~l~~ 243 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN------LVSAEHYRQLER 243 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc------ccCHHHHHHHHH
Confidence 44444444444666666999999998873 33466677788888888888887766554221 110000000011
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcccc---HHHHHHHHHHHHHh-CCCCch-h----HHHHHHHHHhhcCChH
Q 036704 357 GELFRLFSLMLASQTKPDHITFNDVMGACAAMAS---LEMGTQLHCYIMKT-GLALDV-F----VMNGLMDMYVKCGSLG 427 (634)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~~~ 427 (634)
+.+-+..+ .+..++. ....+ .+.|..-++.+... +..|.. . ...-.+-++...|+..
T Consensus 244 ~~~a~~vr----~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 244 DAAAEQVR----MAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred HHHHHHHh----hcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 11211111 1111110 01123 34444445554432 222321 1 2223456778899999
Q ss_pred HHHHHHhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHhcccCCHHHHHHH
Q 036704 428 SARELFNFMEDP----DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV-----RPNHVTLVGVLTACSHVGLVEEGLQL 498 (634)
Q Consensus 428 ~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~ 498 (634)
++++.|+.+..+ ...+-..+..+|...+.+++|..+++.+..... .++......|..++..++++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999842 233556788999999999999999999876531 22344457889999999999999999
Q ss_pred HHHHHHHhCC----------CCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036704 499 YRIMQNEYGI----------IPT---RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 499 ~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 563 (634)
++.+.+.... .|+ ......++..+...|++.+|++.++++ ...| |...+..+...+...|...+|
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 9999863120 122 123445678889999999999999999 3344 888999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 564 KRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++.++.+....|++..+....+.++...|++.+|..+.+.+.+.
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888654
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=4.8e-16 Score=142.63 Aligned_cols=206 Identities=14% Similarity=0.106 Sum_probs=170.8
Q ss_pred HhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHH
Q 036704 384 ACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWSSLIVGYAQFGCGEEA 460 (634)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 460 (634)
.....|++++|.+.+++............||. .-.+-..|++++|++.|-.+. ..+......+.+.|....+...|
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 34467899999999999987655544444543 334677899999999998765 46777777888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036704 461 LKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A 539 (634)
Q Consensus 461 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 539 (634)
++++...... ++.|+..+..|...|-+.|+-.+|.+.+-+--+ -++.+..+..-|..-|....-+++|+.+|++. -
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999877665 344688999999999999999999987655442 45558888888999999999999999999998 7
Q ss_pred CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 540 FDDDIVVWKSLLASC-KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 540 ~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
++|+..-|..++..| .+.|++.+|..+|+.+....|.+...+..|+.++...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 889999999888775 568999999999999999999999999999999888774
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=1.7e-13 Score=131.90 Aligned_cols=522 Identities=11% Similarity=0.055 Sum_probs=366.6
Q ss_pred hHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHH
Q 036704 28 LDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHIL 107 (634)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (634)
...=.+++.+..+..|.+.. +-.+-+.-.+.+.|.-+++++.+- .+.+.. |..++++..-++.|..+++...
T Consensus 362 ~~~K~RVlRKALe~iP~sv~--LWKaAVelE~~~darilL~rAvec--cp~s~d----LwlAlarLetYenAkkvLNkaR 433 (913)
T KOG0495|consen 362 TKNKKRVLRKALEHIPRSVR--LWKAAVELEEPEDARILLERAVEC--CPQSMD----LWLALARLETYENAKKVLNKAR 433 (913)
T ss_pred HHHHHHHHHHHHHhCCchHH--HHHHHHhccChHHHHHHHHHHHHh--ccchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455554444444433 555555666666677777777763 333332 3445566667777888888776
Q ss_pred HcCCCCCcchhhHHHHHHHccCChHHHHHHhccCC--------CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 036704 108 SSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMP--------QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMP 179 (634)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 179 (634)
+. ++.+..+|..-...=-.+|+.+...+++++-. +-+...|-.=...|-..|..-.+..+......-|+.-
T Consensus 434 e~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 434 EI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred hh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence 65 56677777766666667777777777766532 1334455555566666677777777777777666543
Q ss_pred C--hhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHh
Q 036704 180 D--QFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGF 257 (634)
Q Consensus 180 ~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 257 (634)
. ..||..--..|.+.+.++-+..+|...++. ++.+...|...+..--..|..+.-..+|++....-+
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p---------- 581 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP---------- 581 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----------
Confidence 2 246777777777888888888888777664 234455666666666667888888888877655433
Q ss_pred hccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHH
Q 036704 258 SKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYII 337 (634)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 337 (634)
.....|-....-+-..|+...|..++....+.... +...+...+..-.....++.|..++.+..
T Consensus 582 ---------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 582 ---------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred ---------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 24445656666677778888888888877665322 45566666666666666666666665554
Q ss_pred HhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036704 338 KKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM 417 (634)
Q Consensus 338 ~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 417 (634)
.. .|+...|.--+..---.++.++|.+++++.++.=. --...|..+.
T Consensus 646 ~~--------------------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlG 692 (913)
T KOG0495|consen 646 SI--------------------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLG 692 (913)
T ss_pred cc--------------------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHh
Confidence 32 34444554444455556777888888877776532 2345677778
Q ss_pred HHHhhcCChHHHHHHHhcCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHH
Q 036704 418 DMYVKCGSLGSARELFNFMED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE 494 (634)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 494 (634)
+.+-+.++++.|...|..-.+ |+ +..|-.|...--+.|.+..|..++++.+-++ +-+...|...|+.-.+.|+.+.
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 888888999999998887764 44 4568888888888899999999999988875 3368889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
|..++.++.+ ..+.+...|..-|.+..+.++-..+...+++... |+.++..+...+....++++|.+.|.++++.+
T Consensus 772 a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 772 AELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999998886 4566777888888888888887777777777653 55667778888888899999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCCccEEEeCCeEe
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQTKIH 625 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 625 (634)
|++..+|..+-..+.+.|.-++-.+++.+.... .|.-|-.|..+.+.+.
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDIK 896 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhHH
Confidence 999999999999999999999999999988764 3455667877666554
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.2e-14 Score=129.95 Aligned_cols=362 Identities=11% Similarity=0.088 Sum_probs=239.7
Q ss_pred CCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHH
Q 036704 77 RIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGC 156 (634)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 156 (634)
+.+..+|..+|.++++--..+.|.+++++..+...+.+..+||.+|.+-.-..+-+-.-++...-..||..|+|+++.+.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 44667888888888888788888888888777766777788888877654333322222222222357888888888888
Q ss_pred HhCCChh----HHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhH-hHHHHHHHHh----cCCC----ChhHHHHHH
Q 036704 157 SQNGQEN----AAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLG-RQLHAHVIKS----EHGS----HLISQNALI 223 (634)
Q Consensus 157 ~~~g~~~----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~----~~~~----~~~~~~~li 223 (634)
.+.|+++ .|.+++.+|++-|+.|...+|..+|..+++.++..+. ..++.++... .+.| |...+..-+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 8888765 4567888999999999999999999999988888653 3333333321 2222 334555667
Q ss_pred HHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 036704 224 AMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMES--PNLASWNTIIAGVASCSNANEAMSLFSEM 301 (634)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (634)
..|.+..+.+-|..+-.-....+.- +.|+. ....-|..+....|+....+.-+..|+.|
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~-------------------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNW-------------------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCch-------------------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777888888888776555433210 01110 12233566777888888999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHh---HH
Q 036704 302 GDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHI---TF 378 (634)
Q Consensus 302 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~---~~ 378 (634)
.-+-+-|+..+...++++....|.++-.-++|..++..|... +-+-..+++..|......|+.. -+
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~-----------r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF-----------RSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 988888999999999999999999999999999998876422 2233344555555555555433 22
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CChhhHH---HHHHH
Q 036704 379 NDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----PDVVSWS---SLIVG 450 (634)
Q Consensus 379 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~l~~~ 450 (634)
.....-|. ..-.+.....-.++.+..+ +....+.++..+.+.|+.++|.+++..+.+ |.....| -++..
T Consensus 494 ~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~ 570 (625)
T KOG4422|consen 494 QVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDS 570 (625)
T ss_pred HHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHH
Confidence 22222211 1122223333344444444 455667777778899999999998887732 3334444 44555
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036704 451 YAQFGCGEEALKLFRRMRSSG 471 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~ 471 (634)
-.+.+++..|...++-|...+
T Consensus 571 a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHhcCCHHHHHHHHHHHHHcC
Confidence 666777888888888886654
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.8e-13 Score=136.99 Aligned_cols=570 Identities=10% Similarity=0.015 Sum_probs=308.5
Q ss_pred hcCChHHHHHHhhcccCCCCc---cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHH
Q 036704 24 LCMLLDQAGEVVDSFLRRFDD---IWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGR 100 (634)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (634)
..|+.++|.+++.++.+++|. .|. .+...|-..|+.++++..+-.+... .+-|...|..+......+|+++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~-tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYY-TLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHH
Confidence 346666666666666554433 233 4555566666666666555444332 3334445566666666666666666
Q ss_pred HHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCc----cchH----HHHHHHHhCCChhHHHHHHHHH
Q 036704 101 KVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNV----VSWT----AMIAGCSQNGQENAAIELYVQM 172 (634)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~----~li~~~~~~g~~~~a~~~~~~m 172 (634)
-+|.+.++.. |++....-.-+..|-+.|+...|..-|.++.+.++ .-.. ..+..+...++-+.|++.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666654 44444444455566666666666665555543221 1111 1233444455556666665555
Q ss_pred HHC-CCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCC-CCcchH
Q 036704 173 LQS-GLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIAR-KDITSW 250 (634)
Q Consensus 173 ~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 250 (634)
... +-..+...++.+...+.+...++.+......+.....++|..-+..- ..++ .-+.-... .+..+|
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-----~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-----EEPNALCEVGKELSY 376 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-----ccccccccCCCCCCc
Confidence 441 11223334444455555555555555444444331111111100000 0000 00000000 000111
Q ss_pred HH----HHHHhhc---cchHHHHHhcC------CCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHH
Q 036704 251 GS----MIDGFSK---LDFARTVFNEM------ESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLL 317 (634)
Q Consensus 251 ~~----ll~~~~~---~~~a~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 317 (634)
.. +.-++.+ .+....+...+ +..++..|.-+..+|.+.|++.+|+.+|..+...-..-+...|-.+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 10 0111111 11111111111 12466788899999999999999999999998775555677888999
Q ss_pred HHhcCCCChHHHHHHHHHHHHhC-CCCChh-HHhHHHh--cCHhHHHHHHHHHH--------HCCCCCCHhHHHHHHHHh
Q 036704 318 CACTSPLSLYQGMQIHSYIIKKG-FYSNVP-VCNAILQ--HQAGELFRLFSLML--------ASQTKPDHITFNDVMGAC 385 (634)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~-~~~~ll~--~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~ 385 (634)
.++-..|..+.|.+.+..++... ...|+. +..++.+ ++.++|.++++.+. ..+..|+..........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999999998753 233332 3444443 39999999999854 233455566666677788
Q ss_pred hccccHHHHHHHHHHHHHhCCC-----C-----------------chhHHHHHHHHHhhcCChHHHHHHHhcCC------
Q 036704 386 AAMASLEMGTQLHCYIMKTGLA-----L-----------------DVFVMNGLMDMYVKCGSLGSARELFNFME------ 437 (634)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~-----~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 437 (634)
...|+.++-..+...|+..... | .......++.+-.+.++.....+-...-.
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 8899998877777777642211 1 11112222222223332222211111110
Q ss_pred --CCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHH---HH-HHHHHHhcccCCHHHHHHHHHHHHHHh
Q 036704 438 --DPDVV----SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHV---TL-VGVLTACSHVGLVEEGLQLYRIMQNEY 506 (634)
Q Consensus 438 --~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~---~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~ 506 (634)
..+.. .+.-++.++++.+++++|+.+...+......- +.. .+ ...+.+.+..+++..|...++.+...+
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 01111 23445667788888888888888877654211 111 22 234455667788888888888877654
Q ss_pred CCCCCh---hHHHHHHHHH-----------------------------------HhcCChHHHHHHHHhC-CCCCC-HHH
Q 036704 507 GIIPTR---ERRSCVVDLL-----------------------------------ARAGRVHEAEDFINQM-AFDDD-IVV 546 (634)
Q Consensus 507 ~~~~~~---~~~~~l~~~~-----------------------------------~~~g~~~~A~~~~~~~-~~~~~-~~~ 546 (634)
+...++ ..|+...+.. ...+.+.-|+..+-+. ...|| +.+
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~ 776 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLI 776 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHH
Confidence 433322 2233111111 2245566677666555 44454 222
Q ss_pred HHHHHHHHH----------hcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 547 WKSLLASCK----------THGNVDVGKRAAENILKIDPT--NSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 547 ~~~l~~~~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
-..++.++. ++-..-++..++++..+..-. ...++++++.+|...|-..-|..++++.+.-
T Consensus 777 nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 777 NLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 222222221 222345667777777664433 6678999999999999999999999999863
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=2e-13 Score=136.66 Aligned_cols=589 Identities=11% Similarity=0.054 Sum_probs=377.2
Q ss_pred ccccccccchhhHHhhcCChHHHHHHhhcccC---CCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHH
Q 036704 9 CHLPRWCCEYWDAFELCMLLDQAGEVVDSFLR---RFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYAD 85 (634)
Q Consensus 9 ~~l~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 85 (634)
|.-|.-|..|+.+|.++|+.+++...+-..-+ .+.+.|- .+..-..+.|++++|.-.|.++.+. -|++...+.-
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~-~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~e 246 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWK-RLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYE 246 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 34456678899999999999999998865544 4445565 5666678889999999999999985 4556666666
Q ss_pred HHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhH----HHHHHHccCChHHHHHHhccCCC-----CCccchHHHHHHH
Q 036704 86 LISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNH----ILNMYGKCGSLEDARMVFDEMPQ-----RNVVSWTAMIAGC 156 (634)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~ 156 (634)
-...|-+.|+...|.+.|.++.....+.|-.-... .++.+...++-+.|.+.++.... -+...++.++..+
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 77889999999999999999998864333332333 34556667777899988887653 3455788999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh----------------------hHH----HHHHHhhcCCCchhHhHHHHHHHHh
Q 036704 157 SQNGQENAAIELYVQMLQSGLMPDQF----------------------TFG----SIIRACSGLCCVGLGRQLHAHVIKS 210 (634)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~~g~~p~~~----------------------~~~----~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (634)
.+..+++.+......+......+|.. .|. -++-++.+....+....+.....+.
T Consensus 327 l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~ 406 (895)
T KOG2076|consen 327 LKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED 406 (895)
T ss_pred HHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh
Confidence 99999999999998887622222221 111 2223344555556666666666666
Q ss_pred c--CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCC----CcchHHHHHHHh---hccchHHHHHhcCCC---CChhhH
Q 036704 211 E--HGSHLISQNALIAMYTKFDRILDAWNVFSSIARK----DITSWGSMIDGF---SKLDFARTVFNEMES---PNLASW 278 (634)
Q Consensus 211 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~---~~~~~a~~~~~~~~~---~~~~~~ 278 (634)
. +.-+...|.-+..+|...|++.+|..+|..+... +...|-.+-.+| ...+.|.+.++.+.. .+...-
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 6 4445678999999999999999999999988754 333454444444 556778888888775 344455
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh--------CCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-----CCCh
Q 036704 279 NTIIAGVASCSNANEAMSLFSEMGD--------RELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGF-----YSNV 345 (634)
Q Consensus 279 ~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~ 345 (634)
-.|...+-+.|+.++|.+.+..+.. .+..|+..........+...|+.++-..+...++.... .|+.
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~ 566 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRN 566 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 5677788999999999999998642 23445555555566667788888776666555544221 1100
Q ss_pred h---HHhHHH--hcCHhHHH-----------------------HHHHHHHHCCCCCCH--hHHHHHHHHhhccccHHHHH
Q 036704 346 P---VCNAIL--QHQAGELF-----------------------RLFSLMLASQTKPDH--ITFNDVMGACAAMASLEMGT 395 (634)
Q Consensus 346 ~---~~~~ll--~~~~~~a~-----------------------~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~ 395 (634)
. .....- +.....-. ..+......|+..+. ..+.-++.++++.+++++|.
T Consensus 567 ~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl 646 (895)
T KOG2076|consen 567 KKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEAL 646 (895)
T ss_pred HHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0 000000 00000111 111111222222222 23556667888888888888
Q ss_pred HHHHHHHHhCC--CCch---hHHHHHHHHHhhcCChHHHHHHHhcCCCC-----Ch---hhHHHHHHHHHhcCChHHHHH
Q 036704 396 QLHCYIMKTGL--ALDV---FVMNGLMDMYVKCGSLGSARELFNFMEDP-----DV---VSWSSLIVGYAQFGCGEEALK 462 (634)
Q Consensus 396 ~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~~~~a~~ 462 (634)
.+...+..... .++. ..-...+.+.+..+++..|...+..+... ++ ..|+..++.+.+.++-.--.+
T Consensus 647 ~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R 726 (895)
T KOG2076|consen 647 SVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLR 726 (895)
T ss_pred HHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887775432 1111 22344556667778888888888877532 22 256655566666655444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH-HHHH----------hcCChHHH
Q 036704 463 LFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV-DLLA----------RAGRVHEA 531 (634)
Q Consensus 463 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~----------~~g~~~~A 531 (634)
.+..+......-++........-....+.+..|...+-++... .|+....+.++ -++. +.-..-.+
T Consensus 727 ~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG 803 (895)
T KOG2076|consen 727 LIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQG 803 (895)
T ss_pred HHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444333321111222222223344567888898887777643 56644444332 2221 11224455
Q ss_pred HHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch------------hHHHHHHHHHhcCChH
Q 036704 532 EDFINQM-A-FDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA------------ALVLLCNIYASSGKWE 595 (634)
Q Consensus 532 ~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------------~~~~l~~~~~~~g~~~ 595 (634)
..++.+. . -.+ ...++-.++++|...|=..-|...|+++++..|.+.. +-.+|.-+|.+.|+..
T Consensus 804 ~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~ 883 (895)
T KOG2076|consen 804 FAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQ 883 (895)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHH
Confidence 6666555 1 112 4668888999999999999999999999998765332 3445666899999999
Q ss_pred HHHHHHHH
Q 036704 596 EVARLMGS 603 (634)
Q Consensus 596 ~A~~~~~~ 603 (634)
.|.+++++
T Consensus 884 lArqil~k 891 (895)
T KOG2076|consen 884 LARQILEK 891 (895)
T ss_pred HHHHHHHh
Confidence 99999875
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=1.1e-12 Score=130.73 Aligned_cols=520 Identities=10% Similarity=0.035 Sum_probs=317.0
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCC
Q 036704 66 AFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRN 145 (634)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 145 (634)
++-.+... |+.|+..||..++..|+..|+.+.|- +|.-|.-+..+.+...++.++.+....++.+.+. +|.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45555565 99999999999999999999999998 9999998888899999999999999988877665 788
Q ss_pred ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHh-cCCCChhHHHHHHH
Q 036704 146 VVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKS-EHGSHLISQNALIA 224 (634)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 224 (634)
..+|+.|..+|.++||...-..+=+.|. .+...+...|.-.....++..+.-. +.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8899999999999999876222222122 1222222333333333322221110 122222 22444
Q ss_pred HHHhcCChhHHHHHHhccCCCCcc-hHHHHHHHhhc-c---chHHHHHhcCC-CCChhhHHHHHHHHHcCCChhHHHHHH
Q 036704 225 MYTKFDRILDAWNVFSSIARKDIT-SWGSMIDGFSK-L---DFARTVFNEME-SPNLASWNTIIAGVASCSNANEAMSLF 298 (634)
Q Consensus 225 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~-~---~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 298 (634)
.....|-++.+.+++..++...-. ..-.+++.... . +.-....+... .|+..+|..++.+-...|+.+.|..++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 445566666677666655532110 00011222211 1 11122222222 389999999999999999999999999
Q ss_pred HHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCH---
Q 036704 299 SEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDH--- 375 (634)
Q Consensus 299 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~--- 375 (634)
.+|++.|++.+.+-|..++.+ .++...+..+..-|...|+.|+..++...+-...+... -...+.|.+.+.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~---t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ---TKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh---hhhcccccchhhhhh
Confidence 999999999999999888866 88888999999999999999998887665532111000 111112222211
Q ss_pred -hHHHHHHHHhhccccHHH-----HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-------CChh
Q 036704 376 -ITFNDVMGACAAMASLEM-----GTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-------PDVV 442 (634)
Q Consensus 376 -~~~~~ll~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~ 442 (634)
..+..+.++.....+.+. ....+.+..=.|+.....+|...+. ....|+-+..+++...+.. .++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 122233333222223322 2223333333455444444444333 2335666666666666542 2223
Q ss_pred hHHHHHHHHHhcC----------------------ChHHHHHHHHHHHhC----------------CCCC-------CHH
Q 036704 443 SWSSLIVGYAQFG----------------------CGEEALKLFRRMRSS----------------GVRP-------NHV 477 (634)
Q Consensus 443 ~~~~l~~~~~~~~----------------------~~~~a~~~~~~m~~~----------------~~~p-------~~~ 477 (634)
.|..++.-|.+.- +..+..+.+...+.. -..| -..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 3444433333221 111111111111000 0001 112
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-----AFDDDIVVWKSLLA 552 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~ 552 (634)
.-+.++..|++.-+..++...-+..... -+ ...|..||+.+......+.|..+.++. .+.-|..-+..+..
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 2344445555555555555444444322 22 267889999999999999999999988 33346667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHh---cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCCccEEEeC
Q 036704 553 SCKTHGNVDVGKRAAENILK---IDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIEIQ 621 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~ 621 (634)
...+.+....+..+++++.+ ..|........+.......|+.+.-.++.+-+...|+..+ +.-|.-.+
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et-gPl~~vhL 607 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET-GPLWMVHL 607 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc-ccceEEEe
Confidence 89999999999999998877 3344455566666677888999999999999999998773 55565443
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=3.1e-10 Score=109.86 Aligned_cols=500 Identities=11% Similarity=0.036 Sum_probs=295.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHh
Q 036704 59 LYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVF 138 (634)
Q Consensus 59 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 138 (634)
+..+|..+++...+. -|.++..+..-.+.--..|++..|+.+...-.+. ++.+..+|..-+ +....+.|..+.
T Consensus 266 DikKaR~llKSvret--nP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRET--NPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 455666666666654 3344445555444445556666666555444333 233444443322 233444455444
Q ss_pred ccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhH
Q 036704 139 DEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLIS 218 (634)
Q Consensus 139 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (634)
-...+..+.+-..-+.+---..+...=.+++++..+. .|+... |-.+.......+.|..++....+-- +.+.
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~-- 410 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSM-- 410 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchH--
Confidence 4433322222222222222222333344555555543 244332 2233334455555666666666532 2222
Q ss_pred HHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHH
Q 036704 219 QNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLF 298 (634)
Q Consensus 219 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 298 (634)
-|-.+|++..-++.|..+++...+.= ..+...|.+-...--.+|+.+...+++
T Consensus 411 --dLwlAlarLetYenAkkvLNkaRe~i-------------------------ptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 411 --DLWLALARLETYENAKKVLNKAREII-------------------------PTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhC-------------------------CCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 23345555566666776666544321 245566666666666677777777666
Q ss_pred HH----HhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh--HHhHHH----h-cCHhHHHHHHHHHH
Q 036704 299 SE----MGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP--VCNAIL----Q-HQAGELFRLFSLML 367 (634)
Q Consensus 299 ~~----m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll----~-~~~~~a~~~~~~~~ 367 (634)
.+ +...|+..+..-|..=..+|-..|.+-.+..+....+..|+..... ++..-- . +..+-+..+|...+
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 54 3456777777777777777777777777777777777666543321 222111 1 14444555555554
Q ss_pred HCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-ChhhH
Q 036704 368 ASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVVSW 444 (634)
Q Consensus 368 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 444 (634)
+- .+.+...|......=-..|..+....+++++...-.+ ....|-.....+...|++..|..++..+.+ | +...|
T Consensus 544 qv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 544 QV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred hh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 42 1334455555555555667777777777777766543 455555666667777888888888777653 2 33466
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR 524 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (634)
-.-+........++.|..+|.+.... .|+...|.--+....-.++.++|.+++++..+. ++.-...|-.+...+-+
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 66677777777788888888777764 566666666666666677788888888777753 33334466667777777
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.++++.|.+.|..- ..-| .+..|..+...-.+.|+.-+|..++++..-.+|++...|...+..-.+.|+.+.|..++.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 78888887777665 3334 455677777777777788888888888888888888888888888888888888887777
Q ss_pred HHHh
Q 036704 603 SMKE 606 (634)
Q Consensus 603 ~~~~ 606 (634)
+.++
T Consensus 778 kALQ 781 (913)
T KOG0495|consen 778 KALQ 781 (913)
T ss_pred HHHH
Confidence 6665
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=6.7e-13 Score=122.27 Aligned_cols=426 Identities=13% Similarity=0.107 Sum_probs=275.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHhhcCCCchhHhHHHHHHHHhcCCCCh----hHHHHHHHHH
Q 036704 152 MIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGS-IIRACSGLCCVGLGRQLHAHVIKSEHGSHL----ISQNALIAMY 226 (634)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~ 226 (634)
|..-|..+....+|+..++-+.+....|+...... +-+.+.+...+.+|.++++.....-+..+. ...+.+-..+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 34455666778889999998888888888765432 334556778888899988887776443333 3444455567
Q ss_pred HhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 036704 227 TKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDREL 306 (634)
Q Consensus 227 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (634)
.+.|.+++|...|+...+.. ||..+--.|+-++..-|+.++..+.|.+|..--.
T Consensus 287 iq~gqy~dainsfdh~m~~~--------------------------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~ 340 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEA--------------------------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPG 340 (840)
T ss_pred EecccchhhHhhHHHHHHhC--------------------------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCC
Confidence 88899999999888765543 4554444445555566777788888877765432
Q ss_pred CCC------------HhHHHHHH-----HHhcCCC--ChHHHHHHHHHHHHhCCCCChh---------------------
Q 036704 307 IPD------------GLTVRSLL-----CACTSPL--SLYQGMQIHSYIIKKGFYSNVP--------------------- 346 (634)
Q Consensus 307 ~p~------------~~~~~~ll-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~--------------------- 346 (634)
.|| ....+..| .-..+.+ +.+.+.-.-..++.--+.|+-.
T Consensus 341 ~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 341 EIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID 420 (840)
T ss_pred CCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh
Confidence 222 22222222 1111111 1111111111111111222211
Q ss_pred ----HHhHHHhc-CHhHHHHHHHHHHHCCCCCCHhHHHH--HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036704 347 ----VCNAILQH-QAGELFRLFSLMLASQTKPDHITFND--VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDM 419 (634)
Q Consensus 347 ----~~~~ll~~-~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (634)
-...++++ +++.|.++++-+.....+.-...-+. .+.-+....++-.|.++-+......- -+......-...
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCce
Confidence 11112233 77777777777766543332222222 22222234456666666555543221 122222222233
Q ss_pred HhhcCChHHHHHHHhcCCCCChhhHHHHHH---HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 036704 420 YVKCGSLGSARELFNFMEDPDVVSWSSLIV---GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGL 496 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 496 (634)
....|+++.|...|.+....|...-.+|.+ .+-..|+.++|+..|-++..- +.-+...+..+...|....++.+|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 446789999999999988777665555443 366789999999999887543 2346777888889999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 497 QLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
+++-.... -++.|+.+.+.|.+.|-+.|+-..|.+..-+- . ++.+..+..-|..-|....-+++++..|+++.-+.
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99988763 35557889999999999999999999985544 4 44477777777777888888899999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
|.....-..++.++.+.|++++|.++++...++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 987776677788888999999999999988764
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.1e-12 Score=117.38 Aligned_cols=397 Identities=12% Similarity=0.055 Sum_probs=259.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC-hhHHHHHHHHHHh
Q 036704 151 AMIAGCSQNGQENAAIELYVQMLQSGLMPD-QFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH-LISQNALIAMYTK 228 (634)
Q Consensus 151 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 228 (634)
..-.-|.++|++++|++.|.+.++. .|| +..|...-.+|...|+|+++.+.-...++. .|+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445677888999999999988874 577 666777777778888888887777666654 333 3355555666666
Q ss_pred cCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChh--------HHHHHHHH
Q 036704 229 FDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNAN--------EAMSLFSE 300 (634)
Q Consensus 229 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~ 300 (634)
.|++++|+.=+ |-.++..++....-.- .|.+-.++
T Consensus 196 lg~~~eal~D~-------------------------------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e 238 (606)
T KOG0547|consen 196 LGKFDEALFDV-------------------------------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKE 238 (606)
T ss_pred hccHHHHHHhh-------------------------------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 77777765311 1112222222222111 22222222
Q ss_pred Hhh-C--CCCCCHhHHHHHHHHhcCCC------ChHHHHHHHHHHHHhCCCCChhHHhHHHhc---CHhHHHHHHHHHHH
Q 036704 301 MGD-R--ELIPDGLTVRSLLCACTSPL------SLYQGMQIHSYIIKKGFYSNVPVCNAILQH---QAGELFRLFSLMLA 368 (634)
Q Consensus 301 m~~-~--g~~p~~~~~~~ll~~~~~~g------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~a~~~~~~~~~ 368 (634)
-.+ . -+-|+.....+....+...- ..+.+...... .+..+... .+..+.+.+.+-..
T Consensus 239 ~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~-----------~l~~l~~~~~e~Y~~a~~~~te~~~ 307 (606)
T KOG0547|consen 239 KLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAE-----------ALEALEKGLEEGYLKAYDKATEECL 307 (606)
T ss_pred hhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHH-----------HHHHHHhhCchhHHHHHHHHHHHhh
Confidence 222 2 24466555555554443210 00001110000 01111111 33333333333211
Q ss_pred CC-CCCC-----------HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcC
Q 036704 369 SQ-TKPD-----------HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFM 436 (634)
Q Consensus 369 ~~-~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (634)
.. ..++ ..++.....-+.-.|+.-.+..-++..++....++. .|--+..+|....+.++....|+..
T Consensus 308 ~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A 386 (606)
T KOG0547|consen 308 GSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKA 386 (606)
T ss_pred hhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHH
Confidence 10 0111 111111122233467888899999999887766433 3666777899999999999999987
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 437 ED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 437 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
.+ .++.+|..-...+.-.+++++|..=|++.+.. .| +...|..+..+..+.+.++++...|++.++ .++..+
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~ 462 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCP 462 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCc
Confidence 64 45667888888888889999999999999987 44 467777788888899999999999999997 566778
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDDD---------IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
..|+.....+...++++.|.+.|+.. ...|+ +.+.-.++. +.-.+++..|.++++++++.+|....++.
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~ 541 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYE 541 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHH
Confidence 88999999999999999999999987 33333 222233332 33459999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 036704 583 LLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.++....++|+.++|+++|++..
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999764
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=3e-15 Score=141.69 Aligned_cols=226 Identities=18% Similarity=0.209 Sum_probs=114.9
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHh
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVSWSSLIVGYAQ 453 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~ 453 (634)
..+..+...+...++.+.|...++++...+.. ++..+..++.. ...+++++|.+++...- .+++..+..++..+..
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHH
Confidence 34445556677789999999999999977655 66667777777 78899999999988764 3666778888899999
Q ss_pred cCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHH
Q 036704 454 FGCGEEALKLFRRMRSSG-VRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEA 531 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 531 (634)
.++++++..+++.+.... ..++...|..+...+.+.|++++|.+.+++..+. .| +......++..+...|+.+++
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999987643 3456778888899999999999999999999964 55 577888999999999999998
Q ss_pred HHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 532 EDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 532 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.++++.. ..+.|+..+..+..+|...|+.++|...++++.+..|+|+.....++.++...|+.++|.++.+++.+
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888887 22446668889999999999999999999999999999999999999999999999999999887653
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=1.3e-11 Score=123.32 Aligned_cols=574 Identities=11% Similarity=0.033 Sum_probs=310.1
Q ss_pred ccchhhHHhhcCChHHHHHHhhcccCCCCc----cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHh
Q 036704 15 CCEYWDAFELCMLLDQAGEVVDSFLRRFDD----IWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISAC 90 (634)
Q Consensus 15 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (634)
|..++--|+..|+++.|- +|..|.-++-. .++ .++.+..++++.+.+. .|.+++|..|+.+|
T Consensus 28 yqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~-~lv~sh~~And~Enpk------------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 28 YQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFR-GLVASHKEANDAENPK------------EPLADTYTNLLKAY 93 (1088)
T ss_pred HHHHHHHHcccCCCcccc-chhhhhcccccccchhHH-HHHhcccccccccCCC------------CCchhHHHHHHHHH
Confidence 666677777777777776 66665544322 232 3344444445544442 57788999999999
Q ss_pred hccCChhHHHHHHHHHH-------HcCCCCCcch--------------hhHHHHHHHccCChHHHHHHhccCC-------
Q 036704 91 SSLRSLQLGRKVHDHIL-------SSKCQPDAVL--------------HNHILNMYGKCGSLEDARMVFDEMP------- 142 (634)
Q Consensus 91 ~~~~~~~~a~~~~~~~~-------~~~~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~------- 142 (634)
...||+.....+=+.|. ..|+.....- -...+......|-++.+++++..++
T Consensus 94 r~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p 173 (1088)
T KOG4318|consen 94 RIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAP 173 (1088)
T ss_pred HhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccch
Confidence 99998665222222121 1221111000 0112222333455555555553333
Q ss_pred ---------------------------CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCC
Q 036704 143 ---------------------------QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLC 195 (634)
Q Consensus 143 ---------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 195 (634)
.+++.+|.+++.+-..+|+.+.|..++.+|++.|.+.+..-|..|+-+ .+
T Consensus 174 ~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~ 250 (1088)
T KOG4318|consen 174 FQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---IN 250 (1088)
T ss_pred HHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cc
Confidence 156677888888888888999999999999988888888877777765 77
Q ss_pred CchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHh-------
Q 036704 196 CVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFN------- 268 (634)
Q Consensus 196 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~------- 268 (634)
+...+..++.-|.+.|+.|+..|+...+-.+..+|....+... .+.+...-..+..+.++-..+.+.++
T Consensus 251 ~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v 326 (1088)
T KOG4318|consen 251 AAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSV 326 (1088)
T ss_pred cchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 7888888888888888889888888777766665553322221 11111111222222222222222222
Q ss_pred --cCCC-------CChhhHHHHHHHHHcCCChhHHHHHHHHHhhC--CCCC-CHhHHHHHHHHhcCCCChHHHHHHHH--
Q 036704 269 --EMES-------PNLASWNTIIAGVASCSNANEAMSLFSEMGDR--ELIP-DGLTVRSLLCACTSPLSLYQGMQIHS-- 334 (634)
Q Consensus 269 --~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~-- 334 (634)
..++ ....+|...+. ....|.-++..++...|..- .+.+ +...|..++.-|.+.-.......++.
T Consensus 327 ~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~ 405 (1088)
T KOG4318|consen 327 IGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAG 405 (1088)
T ss_pred HHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1111 11244443333 33478888888888777532 2233 23446655555543222111111111
Q ss_pred HHHHh---------------CCCCChhH-------HhHHH-------------------------hc-CHhHHHHHHHHH
Q 036704 335 YIIKK---------------GFYSNVPV-------CNAIL-------------------------QH-QAGELFRLFSLM 366 (634)
Q Consensus 335 ~~~~~---------------~~~~~~~~-------~~~ll-------------------------~~-~~~~a~~~~~~~ 366 (634)
..++. ...|+... .+.+. .. +..+++..-+..
T Consensus 406 qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 406 QGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 00111110 00000 00 111111111111
Q ss_pred HHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHH--HhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----C
Q 036704 367 LASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIM--KTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----P 439 (634)
Q Consensus 367 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~ 439 (634)
... .-+ ..|..++.-++.....+.|..+.++.. ...+..|...+..+.+.+.+.+...++..++.++.+ +
T Consensus 486 e~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~ 562 (1088)
T KOG4318|consen 486 EDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEP 562 (1088)
T ss_pred HHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCc
Confidence 111 011 457778888888888888888888876 334455677788888888899999999998888874 2
Q ss_pred C-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------------------------------CCHHHHHHHHHHhc-
Q 036704 440 D-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR------------------------------PNHVTLVGVLTACS- 487 (634)
Q Consensus 440 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~------------------------------p~~~~~~~l~~~~~- 487 (634)
. ..++-.+++.....|+.+...++.+-+...|+. |.+.....+.+.+.
T Consensus 563 ~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 563 LVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred hHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHh
Confidence 1 223444555566667766666666665544432 22222222222221
Q ss_pred -ccCCHHHHHHHHHHHH---------------HHhCCC---------------C---------ChhHHHHHHHHHHhcCC
Q 036704 488 -HVGLVEEGLQLYRIMQ---------------NEYGII---------------P---------TRERRSCVVDLLARAGR 527 (634)
Q Consensus 488 -~~g~~~~a~~~~~~~~---------------~~~~~~---------------~---------~~~~~~~l~~~~~~~g~ 527 (634)
...+++.+..+-.... +..|+. | +......|+..|.+.|+
T Consensus 643 e~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~ 722 (1088)
T KOG4318|consen 643 ETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGR 722 (1088)
T ss_pred hccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhH
Confidence 1112222221111100 000100 0 11112236678888899
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHhcCChHHHHHHH
Q 036704 528 VHEAEDFINQMAFDDDIVVWKSLLASCKTHG---NVDVGKRAAENILKIDPTNSAA---LVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~ 601 (634)
++.|..+|.++.+.|...+...|+..+.+.. ++.++....+++.+..|..+++ +.-.+...++....+.|.+.+
T Consensus 723 ~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f 802 (1088)
T KOG4318|consen 723 IERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCF 802 (1088)
T ss_pred HHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHH
Confidence 9999999999988888888877777776543 5566666677777766554433 333333334444445788889
Q ss_pred HHHHhCCCcCCC
Q 036704 602 GSMKERGVRKVP 613 (634)
Q Consensus 602 ~~~~~~g~~~~~ 613 (634)
.+..++..+.+.
T Consensus 803 ~r~eeq~~v~ta 814 (1088)
T KOG4318|consen 803 ERLEEQLTVSTA 814 (1088)
T ss_pred HHHHHccCCCcH
Confidence 988888665543
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=3.9e-10 Score=109.03 Aligned_cols=549 Identities=12% Similarity=0.124 Sum_probs=327.4
Q ss_pred cccccchhhHHhhcCChHHHHHHhhcccC-----CCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHH
Q 036704 12 PRWCCEYWDAFELCMLLDQAGEVVDSFLR-----RFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADL 86 (634)
Q Consensus 12 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 86 (634)
|+++-.|.++...+|++..-+..|++... ++...|. ..+.-....+-++-++.+|++-.+. ++..-+--
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~-lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWD-LYLKFVESHGLPETSIRVYRRYLKV-----APEAREEY 175 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchH-HHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHH
Confidence 88888888888999999999999987542 3445677 5666666777788899999988753 44457777
Q ss_pred HHHhhccCChhHHHHHHHHHHHcC------CCCCcchhhHHHHHHHccCChH---HHHHHhccCCC--CC--ccchHHHH
Q 036704 87 ISACSSLRSLQLGRKVHDHILSSK------CQPDAVLHNHILNMYGKCGSLE---DARMVFDEMPQ--RN--VVSWTAMI 153 (634)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~li 153 (634)
+..++..+++++|.+.+...+... -+.+-..|..+.+...+.-+.- ....+++.+.. +| ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 888888999999988888776432 2455566777776666543322 22333444332 22 34788999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
..|.+.|.+++|.++|++-... ..+..-|..+.++|+.-.....+..+- ...+.+..+. ..-+++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~ 320 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLE 320 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHH
Confidence 9999999999999999887764 244555666666654321111111100 0000010000 011233
Q ss_pred HHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC----
Q 036704 234 DAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD---- 309 (634)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---- 309 (634)
-...-|+.+..+.+...|.++-. -...++..|..-+. +..|+..+-...|.+..+. +.|.
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLR-------------Qn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~G 384 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLR-------------QNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVG 384 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHh-------------cCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCC
Confidence 33344444443333222221110 00124444544333 3346666666677666543 2221
Q ss_pred -H-hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH-------h-cCHhHHHHHHHHHHHCCCCC------
Q 036704 310 -G-LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL-------Q-HQAGELFRLFSLMLASQTKP------ 373 (634)
Q Consensus 310 -~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll-------~-~~~~~a~~~~~~~~~~~~~~------ 373 (634)
. ..+..+.+.|-+.|+++.|..+|++..+.....-....+... . .+++.|++++++.....-.|
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 1 235566666777788888888887777665544322222222 2 26667777666554321111
Q ss_pred -----------CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC----
Q 036704 374 -----------DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---- 438 (634)
Q Consensus 374 -----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 438 (634)
+...|+..+..--..|-++....+++.+++..+- ++.+.......+-...-++++.+++++-..
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 1123444445555667788888899999988765 555444444455566778999999997653
Q ss_pred CChh-hHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHhcccCCHHHHHHHHHHHHHHhCCCCC-
Q 036704 439 PDVV-SWSSLIVGYAQF---GCGEEALKLFRRMRSSGVRPNHVTLVGVL--TACSHVGLVEEGLQLYRIMQNEYGIIPT- 511 (634)
Q Consensus 439 ~~~~-~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 511 (634)
|++. .|+..+.-+.++ ...+.|..+|++..+ |.+|...-+..|+ ..-..-|-...|..+++++.. ++.+.
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~ 620 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQ 620 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHH
Confidence 5543 677776665542 468999999999999 6666543322222 222245888889999999765 55553
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHH
Q 036704 512 -RERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVV---WKSLLASCKTHGNVDVGKRAAENILKIDPT--NSAALVLL 584 (634)
Q Consensus 512 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l 584 (634)
..+|+..|.-....=-+....++|++. ..-|+... .......-.+.|..+.|..+|....++.|+ +...|...
T Consensus 621 ~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~tw 700 (835)
T KOG2047|consen 621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTW 700 (835)
T ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHH
Confidence 346776665444433344455555555 33344332 223344456788899999999888885544 66677777
Q ss_pred HHHHHhcCChHHHHHHH
Q 036704 585 CNIYASSGKWEEVARLM 601 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~ 601 (634)
-.--.+.||-+.-.+.+
T Consensus 701 k~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 701 KEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 77777888855444443
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.9e-10 Score=105.95 Aligned_cols=458 Identities=12% Similarity=0.104 Sum_probs=222.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccC
Q 036704 50 LFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCG 129 (634)
Q Consensus 50 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 129 (634)
....-..++++..|..+|+++... -.-+...+.--+..-.+......|+.++++....=...| ..|--.+-+=-..|
T Consensus 79 YaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhc
Confidence 333344455555555555555542 112222333334444445555555555555554321111 12222222223345
Q ss_pred ChHHHHHHhccCC--CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHH
Q 036704 130 SLEDARMVFDEMP--QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHV 207 (634)
Q Consensus 130 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (634)
++..|.++|+... +|+..+|++.|..=.+....+.|..+++...- ++|+..+|.--.+.=-+.|....+..+++..
T Consensus 156 Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5555555555443 35555555555555555555555555555554 3455555555555445555555555555555
Q ss_pred HHhc--CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCc-----chHHH---HHHHhhccch--------HHHHHhc
Q 036704 208 IKSE--HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDI-----TSWGS---MIDGFSKLDF--------ARTVFNE 269 (634)
Q Consensus 208 ~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~---ll~~~~~~~~--------a~~~~~~ 269 (634)
++.- -..+...+.+....-.++..++.|.-+|+-..+.=+ ..|.. .=.-++.... -.--++.
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 4421 111223333344444444555555555543322111 11111 1111111100 0000111
Q ss_pred CCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH--hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCC
Q 036704 270 MES---PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG--LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSN 344 (634)
Q Consensus 270 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 344 (634)
+.+ -|-.+|-..++.-...|+.+...++|+..... ++|-. ..+.-.|..+.+
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWin---------------------- 370 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWIN---------------------- 370 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHH----------------------
Confidence 111 24556666666666777888888888777654 33311 011111100000
Q ss_pred hhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHH----HHHH
Q 036704 345 VPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGL----MDMY 420 (634)
Q Consensus 345 ~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~ 420 (634)
..+|++ ....+++.+.++++..++. ++....++..+ ...-
T Consensus 371 ---------------YalyeE--------------------le~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 371 ---------------YALYEE--------------------LEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred ---------------HHHHHH--------------------HHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 001111 1233444555555555441 22233333322 2223
Q ss_pred hhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHH
Q 036704 421 VKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQL 498 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 498 (634)
.++.++..|.+++..... |...+|...|..-.+.++++.+..++++..+-+ +-|..+|......-...|+.+.|..+
T Consensus 415 IRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 455666666666665542 556666666666666677777777777777654 22456666666656666777777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHH
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCK-----THG-----------NVD 561 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~-----~~g-----------~~~ 561 (634)
|+-+..+....-....|.+.|+.-...|.++.|..+++++ ...+...+|-+++..-. ..| +..
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~ 573 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIK 573 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHH
Confidence 7766654333334455566666666677777777777766 33334445555444322 222 556
Q ss_pred HHHHHHHHHHh
Q 036704 562 VGKRAAENILK 572 (634)
Q Consensus 562 ~a~~~~~~~~~ 572 (634)
.|..+|+++..
T Consensus 574 ~AR~iferAn~ 584 (677)
T KOG1915|consen 574 RARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHH
Confidence 77888887765
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4e-11 Score=111.36 Aligned_cols=321 Identities=12% Similarity=0.036 Sum_probs=232.2
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh-HHhHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP-VCNAI 351 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l 351 (634)
.|...+......+.+.|....|.+.|...... .+..-..|..|...+. +.+.+. ... .+...+.. ....+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e~~~----~l~-~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIEILS----ILV-VGLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHHHHH----HHH-hcCcccchHHHHHH
Confidence 46666666666777888889999988876543 1222233333332222 222111 111 11221111 11111
Q ss_pred H----hc--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHhhc
Q 036704 352 L----QH--QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLA--LDVFVMNGLMDMYVKC 423 (634)
Q Consensus 352 l----~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 423 (634)
+ +. +.+++..-.......|.+-+...-+....+.-...++++|+.+|+++.+..+- -|..+|+.++-.-..+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 1 11 66777777777777787777666666667777888999999999999987431 1667777776443333
Q ss_pred CChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 424 GSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 424 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
.++.---...-.+.+-.+.|..++.+-|.-.++.++|..+|++..+.+ +-....|+.+..-|....+...|.+-++.+.
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 333322222233445556677888888999999999999999999874 2246678888889999999999999999998
Q ss_pred HHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 036704 504 NEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAA 580 (634)
Q Consensus 504 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 580 (634)
+ +.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |+..|.+|+.+|.+.++.++|+..|+++......+..+
T Consensus 392 d---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 392 D---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred h---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 4 455 7888889999999999999999999998 6666 78999999999999999999999999999988888899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 581 LVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+..|+.+|-+.++.++|...+++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988765
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-11 Score=114.62 Aligned_cols=357 Identities=10% Similarity=0.064 Sum_probs=189.8
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHh---hccchHHHHHhcCCCCChhhH-HHHHHHHHc
Q 036704 212 HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGF---SKLDFARTVFNEMESPNLASW-NTIIAGVAS 287 (634)
Q Consensus 212 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~-~~li~~~~~ 287 (634)
...|...+-..-..+-+.|....|...|......-+..|.+.+... ...+.+..+--..+..+...- -.+..++-.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3445554444555566778888888888887777666666555432 222222222222222111111 123345555
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLML 367 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~ 367 (634)
..+.+++..-.......|.+-+...-+....+.....++++|+.+|+.+.+....-
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR------------------------ 295 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR------------------------ 295 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------------------------
Confidence 56777777777777777766655555555555566667777777777766653210
Q ss_pred HCCCCCCHhHHHHHHHHhhccccHH-HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---hhh
Q 036704 368 ASQTKPDHITFNDVMGACAAMASLE-MGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD---VVS 443 (634)
Q Consensus 368 ~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~ 443 (634)
--|..+|+.++-.-.....+. .|..+++ =-+-.+.|+..+.+.|+-.++.+.|...|++..+.| ...
T Consensus 296 ----l~dmdlySN~LYv~~~~skLs~LA~~v~~-----idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a 366 (559)
T KOG1155|consen 296 ----LDDMDLYSNVLYVKNDKSKLSYLAQNVSN-----IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA 366 (559)
T ss_pred ----chhHHHHhHHHHHHhhhHHHHHHHHHHHH-----hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH
Confidence 112334444443222211111 1111111 011233445555555666666666666666555322 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLL 522 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 522 (634)
|+.+..-|...++...|++.+++.++-. +.|-..|-.+.++|.-.+.+.-|+-.|++... .+| |..+|.+|.++|
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECY 442 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHH
Confidence 5555566666666666666666666553 23556666666666666666666666666552 333 555666666666
Q ss_pred HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHhcCC
Q 036704 523 ARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILK-------IDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~ 593 (634)
.+.++.++|++.|.+. ..+.+...+..+++.|.+.++..+|...|++-++ ..|.-..+...|+.-+.+.++
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc
Confidence 6666666666666665 2223445666666666666666666666666554 222222233334555556666
Q ss_pred hHHHHHHHHHHH
Q 036704 594 WEEVARLMGSMK 605 (634)
Q Consensus 594 ~~~A~~~~~~~~ 605 (634)
+++|..+.....
T Consensus 523 ~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 523 FDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHh
Confidence 666655544443
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=5.7e-10 Score=104.03 Aligned_cols=470 Identities=11% Similarity=0.054 Sum_probs=331.5
Q ss_pred CcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC--CCcc-chHHHHHH
Q 036704 79 RPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ--RNVV-SWTAMIAG 155 (634)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~ 155 (634)
+...+.--.+--..++++..|+.+|++.+... ..+...|...+.+=.++..+..|..+++.... |.+. .|--.+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33344444455567789999999999999876 66777888888888999999999999998653 3332 45555555
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 036704 156 CSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDA 235 (634)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 235 (634)
=-..|+...|.++|+...+. .|+...|.+.|+.=.+-..++.|..+++..+- +.|+...|-.....-.+.|.+..|
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 55679999999999998874 79999999999999999999999999998875 458999999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC---HhH
Q 036704 236 WNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD---GLT 312 (634)
Q Consensus 236 ~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~ 312 (634)
..+++...+. ++.- .-+...+.++...-.++..++.|.-+|.-.... -|. ...
T Consensus 227 R~VyerAie~-----------~~~d-----------~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL 282 (677)
T KOG1915|consen 227 RSVYERAIEF-----------LGDD-----------EEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEEL 282 (677)
T ss_pred HHHHHHHHHH-----------hhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHH
Confidence 9998764321 0000 013344555555556667777777777766654 222 222
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHH
Q 036704 313 VRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLE 392 (634)
Q Consensus 313 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 392 (634)
|......--+-|+........-. +-.--++.+...+ +.|-.++--.++.-...|+.+
T Consensus 283 ~k~~~~fEKqfGd~~gIEd~Iv~----------------------KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 283 YKKYTAFEKQFGDKEGIEDAIVG----------------------KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHhcchhhhHHHHhh----------------------hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHH
Confidence 33333222223332222211100 0001122333322 556677777788888889999
Q ss_pred HHHHHHHHHHHhCCCCch------hHHHHHHHH---HhhcCChHHHHHHHhcCCC--CC-hhhHHHH----HHHHHhcCC
Q 036704 393 MGTQLHCYIMKTGLALDV------FVMNGLMDM---YVKCGSLGSARELFNFMED--PD-VVSWSSL----IVGYAQFGC 456 (634)
Q Consensus 393 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~---~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l----~~~~~~~~~ 456 (634)
...++++.++..-++.+. ++|--+--+ -....+.+.+.++|+.+.+ |. ..||.-+ ..--.++.+
T Consensus 340 ~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~ 419 (677)
T KOG1915|consen 340 RIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLN 419 (677)
T ss_pred HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcc
Confidence 999999999865433221 122211111 1346788999999987765 33 3344443 334457789
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 457 GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
...|.+++...+ |..|-..+|...|..-.+.++++.+..+|++... ..| +..+|......-...|+.+.|..+|
T Consensus 420 l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 420 LTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999998877 4588999999999999999999999999999984 455 6778888888888899999999999
Q ss_pred HhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-----hcC-----------ChH
Q 036704 536 NQMAFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA-----SSG-----------KWE 595 (634)
Q Consensus 536 ~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~ 595 (634)
+-.-.+|. ...|.+.+..-...|.++.|..+|+++++..+... +|...+.--. +.| +..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~ 573 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIK 573 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHH
Confidence 98854553 34666666666788999999999999999887544 6777665443 344 566
Q ss_pred HHHHHHHHHHh
Q 036704 596 EVARLMGSMKE 606 (634)
Q Consensus 596 ~A~~~~~~~~~ 606 (634)
.|..+|+++..
T Consensus 574 ~AR~iferAn~ 584 (677)
T KOG1915|consen 574 RARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHH
Confidence 78888887754
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-11 Score=117.69 Aligned_cols=246 Identities=10% Similarity=0.036 Sum_probs=187.8
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHh
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFN 434 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (634)
++.+.+++.+.+.+.. ++....+..-|.++...|+..+-..+=..+++.-+. .+.+|-++.-.|...|+..+|.+.|.
T Consensus 259 ~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 259 RFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred hHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 5555555555555443 555566666666777778777666666666665543 67788888888888899999999999
Q ss_pred cCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-
Q 036704 435 FMEDPD---VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP- 510 (634)
Q Consensus 435 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 510 (634)
....-| ...|-.+...|+-.|..++|+..+...-+.- +-....+.-+.--|.+.++.+.|.+.|.... ++-|
T Consensus 337 Kat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~ 412 (611)
T KOG1173|consen 337 KATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPS 412 (611)
T ss_pred HHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCC
Confidence 876533 3478889999999999999999988876652 1122223334445778899999999999887 5555
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM--------AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
|+...+-+.-.....+.+.+|..+|+.. +.++ -..+++.|+-+|.+.+.+++|+..+++++...|.++.++
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~ 492 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH 492 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH
Confidence 6667777777777788999999998876 1111 234688899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
..++-+|...|+.+.|.+.|.+.+.
T Consensus 493 asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=8.8e-12 Score=123.51 Aligned_cols=279 Identities=12% Similarity=0.026 Sum_probs=194.9
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHH
Q 036704 287 SCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLM 366 (634)
Q Consensus 287 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~ 366 (634)
..|++++|.+.+....+.+-.| ...|.....+..+.|+.+.+.+.+..+.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--------------------------- 147 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--------------------------- 147 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------------
Confidence 3689999998887755432111 222333344456777777777777666543
Q ss_pred HHCCCCCCHhHHH--HHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC---Ch
Q 036704 367 LASQTKPDHITFN--DVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP---DV 441 (634)
Q Consensus 367 ~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 441 (634)
.|+..... .....+...|+++.|...++++.+..+. ++.....+...|.+.|++++|.+++..+.+. +.
T Consensus 148 -----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 148 -----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred -----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 34433222 2356777788888888888888877754 6677777888888888888888888877641 11
Q ss_pred h--------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh
Q 036704 442 V--------SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE 513 (634)
Q Consensus 442 ~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 513 (634)
. .|..++.......+.+...++|+.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+..
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~ 297 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDER 297 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHH
Confidence 1 2333344444455566667777776543 2446778888889999999999999999888753 44543
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
.. ++.+....++.+++.+..++. ...| |+..+..+...|...|++++|.+.|+++++..|++. .+..++.++.+.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~ 374 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRL 374 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHc
Confidence 32 233334568899999999888 4455 566788888999999999999999999999998654 466788899999
Q ss_pred CChHHHHHHHHHHHh
Q 036704 592 GKWEEVARLMGSMKE 606 (634)
Q Consensus 592 g~~~~A~~~~~~~~~ 606 (634)
|+.++|.+++++-..
T Consensus 375 g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 375 HKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987654
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=4.2e-11 Score=118.73 Aligned_cols=281 Identities=8% Similarity=-0.049 Sum_probs=212.7
Q ss_pred cCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHH-HHHHHcCCChhHHHHHHHHHhhCCCC
Q 036704 229 FDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTI-IAGVASCSNANEAMSLFSEMGDRELI 307 (634)
Q Consensus 229 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~ 307 (634)
.|+++.|++.+....+.. +++..+..+ ..+..+.|+++.|.+.+.++.+. .
T Consensus 97 eGd~~~A~k~l~~~~~~~--------------------------~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~ 148 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--------------------------EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--A 148 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--------------------------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 689999988777643321 123333333 45558999999999999999764 5
Q ss_pred CCHhHHH--HHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 036704 308 PDGLTVR--SLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGAC 385 (634)
Q Consensus 308 p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 385 (634)
|+..... .....+...|+++.|...++.+.+.. +-+......+...+
T Consensus 149 ~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-------------------------------P~~~~al~ll~~~~ 197 (398)
T PRK10747 149 DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-------------------------------PRHPEVLRLAEQAY 197 (398)
T ss_pred CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------------------CCCHHHHHHHHHHH
Confidence 6654333 22445666777666666666555432 44567788889999
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchh-------HHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcC
Q 036704 386 AAMASLEMGTQLHCYIMKTGLALDVF-------VMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFG 455 (634)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 455 (634)
.+.|++++|..++..+.+.+..++.. .|..++.......+.+...++++.+.+ .++.....+...+...|
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 99999999999999999887653332 233344444455667888888888863 56778888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
+.++|.+.+++..+. .|+.... ++.+....++++++.+..+...+. .+-|......+...+.+.|++++|.+.|
T Consensus 278 ~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 278 DHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred CHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999885 4555322 234445669999999999999864 4456677889999999999999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 536 NQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 536 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
+.. ...|+...+..+...+.+.|+.++|.+.+++.+...
T Consensus 352 e~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 352 RAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 998 778999999999999999999999999999987743
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=2.7e-12 Score=124.65 Aligned_cols=279 Identities=14% Similarity=0.077 Sum_probs=205.3
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHC
Q 036704 290 NANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLAS 369 (634)
Q Consensus 290 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~ 369 (634)
+..+|+..|.....+ +.-+......+..+|...++++++..+|+.+.+....-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r-------------------------- 386 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR-------------------------- 386 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------------------
Confidence 467888888885443 33344667778888999999999988888887643210
Q ss_pred CCCCCHhHHHHHHHHhhccccHHHHHHHHHH-HHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC---ChhhHH
Q 036704 370 QTKPDHITFNDVMGACAAMASLEMGTQLHCY-IMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP---DVVSWS 445 (634)
Q Consensus 370 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 445 (634)
.-+..+|++.+-.+-+. -+..++.+ +.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+. ...+|+
T Consensus 387 --v~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayT 459 (638)
T KOG1126|consen 387 --VKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYT 459 (638)
T ss_pred --ccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhh
Confidence 11233444444333221 11222222 22222 336788888888888888888888888888753 345777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLA 523 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 523 (634)
.+..-+.....+|.|...|+..+.. .| +-..|..+...|.++++++.|+-.|+++. .+.| +..+...+...+-
T Consensus 460 LlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 460 LLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQH 534 (638)
T ss_pred hcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHH
Confidence 7777788888899999999887754 22 24455566778889999999999999887 5566 5666677788888
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 036704 524 RAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
+.|+.++|+.+++++ -..| |+..--..+..+...+++++|...++++.+..|++..++..++.+|.+.|+.+.|+.-|
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 999999999999988 3334 66666667777888999999999999999999999999999999999999999999988
Q ss_pred HHHHhC
Q 036704 602 GSMKER 607 (634)
Q Consensus 602 ~~~~~~ 607 (634)
.-+.+.
T Consensus 615 ~~A~~l 620 (638)
T KOG1126|consen 615 SWALDL 620 (638)
T ss_pred HHHhcC
Confidence 877653
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=5.8e-11 Score=118.42 Aligned_cols=127 Identities=11% Similarity=0.053 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH--HHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRER---RSCVVDLLARAGRVHEAEDFINQM-AFDD-DI--VVW 547 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~--~~~ 547 (634)
+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.+.+.+++. ...| |+ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 3444444445555555555555555555432 222110 011111112234455555555544 2223 23 445
Q ss_pred HHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 548 KSLLASCKTHGNVDVGKRAAE--NILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.++.+.+.+.|++++|.+.|+ ...+..|++.. +..++.++.+.|+.++|.+++++..
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666666666 34445554333 4466666666666666666666543
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=5.9e-12 Score=122.40 Aligned_cols=245 Identities=13% Similarity=0.144 Sum_probs=197.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHhhcCChH-HHHH
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGL--ALDVFVMNGLMDMYVKCGSLG-SARE 431 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~-~A~~ 431 (634)
+..+|+..|..+. ..+.-+......+..+|...+++++|..+|+.+.+... --+..+|.+.+--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 7788999998844 43455557888889999999999999999999986542 126677777664432211111 1112
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 432 LFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
+.+ .....+.+|.++.++|.-+++.+.|++.|++.++. .| ...+|+.+-.-+.....+|.|...|+... ++.|
T Consensus 413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~ 486 (638)
T KOG1126|consen 413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDP 486 (638)
T ss_pred HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCc
Confidence 221 22356779999999999999999999999999986 55 57888888888889999999999999887 4444
Q ss_pred C-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 511 T-RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 511 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
. -..|--+.-.|.+.++++.|+-.|+++ .+.| +......+...+.+.|+.|+|+++++++..++|.++..-..-+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 2 334455678899999999999999998 7777 566778888889999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 036704 588 YASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~ 606 (634)
+...+++++|+..++++++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 9999999999999999987
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=9.7e-11 Score=116.85 Aligned_cols=283 Identities=10% Similarity=-0.028 Sum_probs=207.6
Q ss_pred HHcCCChhHHHHHHHHHhhCCCCCCHh-HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh--H--HhHHH-hcCHhH
Q 036704 285 VASCSNANEAMSLFSEMGDRELIPDGL-TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP--V--CNAIL-QHQAGE 358 (634)
Q Consensus 285 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~--~~~ll-~~~~~~ 358 (634)
....|+++.|.+.+....+. .|++. .+.....+....|+.+.+.+.+....+....+... . ....+ +++++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 35679999999999887664 45433 34445567778899999999999887655443321 1 12222 349999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------hhcCChHHHHH
Q 036704 359 LFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMY-------VKCGSLGSARE 431 (634)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~ 431 (634)
|...++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..++......-..++ ......+...+
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999875 4466788899999999999999999999999987653332211111111 22233455566
Q ss_pred HHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--H-HHHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 432 LFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVT--L-VGVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 432 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
.++...+ .++..+..+...+...|+.++|.+.+++..+. .|+... + ..........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 6666653 47788899999999999999999999999987 444332 1 11222234457889999999888864
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 506 YGIIPTRERRSCVVDLLARAGRVHEAEDFINQ--M-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 506 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
..-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333226677899999999999999999994 3 6789998899999999999999999999999765
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=2.4e-13 Score=128.73 Aligned_cols=225 Identities=17% Similarity=0.125 Sum_probs=104.6
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcC
Q 036704 380 DVMGACAAMASLEMGTQLHCYIMKTG-LALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP---DVVSWSSLIVGYAQFG 455 (634)
Q Consensus 380 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 455 (634)
.+...+.+.|++++|.++++...... .+.+...|..+.......++.+.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45778889999999999997665554 3446666777777888899999999999999852 34456666666 7889
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
++++|.+++++..+. .+++..+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887665 356777788888899999999999999998865345667888999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 536 NQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 536 ~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++. ...| |......++..+...|+.+++.++++...+..|.++..+..++.+|...|+.++|+..+++..+.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 998 5556 57788999999999999999999999999988999999999999999999999999999998864
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1e-09 Score=102.83 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=146.5
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhc
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD---VVSWSSLIVGYAQF 454 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~ 454 (634)
|--+...|....+.++....|++..+.+.. ++.+|..-..++.-.+++++|..-|+.....+ ...|-.+..+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 556666788888888888888888887765 67777777777888889999999999887533 34566666666678
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC---------hhHHHHHHHHHHhc
Q 036704 455 GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT---------RERRSCVVDLLARA 525 (634)
Q Consensus 455 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~ 525 (634)
+.+++++..|++.+++ ++-.+..|+.....+...+++++|.+.|+.... +.|+ +.+-..++- +.-.
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~-~qwk 516 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLV-LQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhh-hchh
Confidence 8999999999999887 333478888899999999999999999998874 3443 122222222 2234
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 526 GRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 526 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
+++..|++++++. ...| ....+..|...-.+.|+.++|+++|++...+-.
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8999999999988 6666 455888899999999999999999999876443
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.1e-09 Score=100.33 Aligned_cols=267 Identities=10% Similarity=0.043 Sum_probs=131.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCH
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQA 356 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 356 (634)
.|..-+.+.-+.|+.+.+-.++.+.-+.--.++...+..........|+.+.|..-++.+.+.+
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~---------------- 183 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT---------------- 183 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC----------------
Confidence 3444445555666666666666665543222222233333333444444444444333333321
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcC
Q 036704 357 GELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFM 436 (634)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (634)
+-++........+|.+.|++.....++..+.+.+.-.+...-.
T Consensus 184 ---------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------- 226 (400)
T COG3071 184 ---------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------- 226 (400)
T ss_pred ---------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------
Confidence 3344455556666666666666666666666665543322100
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHH
Q 036704 437 EDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRS 516 (634)
Q Consensus 437 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 516 (634)
-...+|+.+++-....+..+.-...|+...++ .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+ ..
T Consensus 227 --le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~ 299 (400)
T COG3071 227 --LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LC 299 (400)
T ss_pred --HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HH
Confidence 01123444444444444444444445444333 2333444445555555566666666665555544 44444 11
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 517 CVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
.++ ...+-++.+.-++..+.. ..+.++..+.+|...|.+.+.+.+|...++.+++..| +...|..++.++.+.|+.
T Consensus 300 ~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLI-PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEP 377 (400)
T ss_pred HHH-hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCCh
Confidence 111 223344444444433333 1112335555666666666666666666666666555 444566666666666666
Q ss_pred HHHHHHHHHHH
Q 036704 595 EEVARLMGSMK 605 (634)
Q Consensus 595 ~~A~~~~~~~~ 605 (634)
++|.+..++..
T Consensus 378 ~~A~~~r~e~L 388 (400)
T COG3071 378 EEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=7.7e-11 Score=109.00 Aligned_cols=197 Identities=18% Similarity=0.129 Sum_probs=164.6
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA 485 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 485 (634)
....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788889999999999999987753 335577888889999999999999999998874 3356777888888
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 563 (634)
+...|++++|.+.++++............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999864222234556777888999999999999999988 3344 567888899999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 564 KRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
...++++.+..|.++..+..++.++...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998888888888999999999999999999887765
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=7.9e-10 Score=101.37 Aligned_cols=282 Identities=11% Similarity=-0.016 Sum_probs=183.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 036704 159 NGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNV 238 (634)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 238 (634)
.|++..|+++..+-.+.+-.| ...|..-.++.-..|+.+.+-.++.++.+....++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 688888888888877665333 3446666677778888998888888888876667777777888888889999999888
Q ss_pred HhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHh-------
Q 036704 239 FSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGL------- 311 (634)
Q Consensus 239 ~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------- 311 (634)
+.++.+..+ .++.......++|.+.|++.....++..|.+.|+--|+.
T Consensus 176 v~~ll~~~p-------------------------r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 176 VDQLLEMTP-------------------------RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred HHHHHHhCc-------------------------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 877665544 577788889999999999999999999999988655442
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccH
Q 036704 312 TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASL 391 (634)
Q Consensus 312 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 391 (634)
++..++.-+...+..+.-...|+...+. .+-++..-.+++.-+...|+.
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-------------------------------lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-------------------------------LRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHH-------------------------------hhcChhHHHHHHHHHHHcCCh
Confidence 4445554444444444444444433221 133444555566666677777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 392 EMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
++|.++..+..+.+..|+... + -...+-++...-++..+.-. ..++..+.+|...|.+++.+.+|...|+...
T Consensus 280 ~~A~~~i~~~Lk~~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 280 DEAQEIIEDALKRQWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred HHHHHHHHHHHHhccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777666555111 1 12233333333333222211 2333556666666666666666666666555
Q ss_pred hCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 469 SSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
+. .|+..+|..+..++.+.|++.+|.+..++..
T Consensus 356 ~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 356 KL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 54 5666666666666666666666666666555
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.1e-09 Score=104.71 Aligned_cols=281 Identities=10% Similarity=0.010 Sum_probs=194.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ 353 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (634)
++.....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+=..+++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-------------- 307 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-------------- 307 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--------------
Confidence 33334444555666667777777776665441 333334444444555555444433333333322
Q ss_pred cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
.|-...+|-++.--|...|+.++|.+++.+....+.. =...|-.+...|+-.|.-++|...+
T Consensus 308 -----------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 308 -----------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred -----------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHH
Confidence 1344567777777777788888888888887755443 2346777888888888888888888
Q ss_pred hcCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-CCC
Q 036704 434 NFMED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY-GII 509 (634)
Q Consensus 434 ~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 509 (634)
....+ |. ...+--+.--|.+.++.+.|.+.|....... +-|+..++-+.-.....+.+.+|..+|+.....- .+.
T Consensus 370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 76543 11 1122233445778889999999999887652 3357777777777777899999999998876321 111
Q ss_pred ----CChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 510 ----PTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 510 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
....+++.|..+|.+.+.+++|+..+++. -.+.+..++.+++-.|...|+++.|++.|.+++.+.|++..+-..
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 14456888999999999999999999988 334488899999999999999999999999999999999776666
Q ss_pred HHHHH
Q 036704 584 LCNIY 588 (634)
Q Consensus 584 l~~~~ 588 (634)
|..+.
T Consensus 529 L~~ai 533 (611)
T KOG1173|consen 529 LKLAI 533 (611)
T ss_pred HHHHH
Confidence 65544
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.1e-08 Score=101.48 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=111.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKT 556 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 556 (634)
|......+.+.+..++|...+.+..+ -.......|......+...|.+++|.+.|... ...| ++....++...+..
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44555667778888888888777764 23345667777778888999999999999887 6666 57789999999999
Q ss_pred cCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCCccEEE
Q 036704 557 HGNVDVGKR--AAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKVPGQSWIE 619 (634)
Q Consensus 557 ~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~ 619 (634)
.|+-.-|.. ++..+++.+|.++.+|..++.++.+.|+.++|.+.|+...+-.- ..|-.+|..
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~pFs~ 794 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLPFSN 794 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCcccccc
Confidence 998877777 99999999999999999999999999999999999998876432 334445544
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.6e-09 Score=96.24 Aligned_cols=268 Identities=9% Similarity=0.029 Sum_probs=139.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChhHH
Q 036704 159 NGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH---LISQNALIAMYTKFDRILDA 235 (634)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 235 (634)
+.+.++|.++|-+|.+.. +-+..+--+|-+.+.+.|..|.|.++++.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 457777777777777632 12223334555666677777777777777665431111 22344566778888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHh----
Q 036704 236 WNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGL---- 311 (634)
Q Consensus 236 ~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 311 (634)
+.+|..+.+.+.. -....-.|+..|-...+|++|++.-+++.+.|-.+...
T Consensus 127 E~~f~~L~de~ef-------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq 181 (389)
T COG2956 127 EDIFNQLVDEGEF-------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ 181 (389)
T ss_pred HHHHHHHhcchhh-------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH
Confidence 8888877664432 23345567888888888888888888877665443322
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhcccc
Q 036704 312 TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHI-TFNDVMGACAAMAS 390 (634)
Q Consensus 312 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~ 390 (634)
.|..+...+....+++.|...+.+..+. .|+.+ .--.+.+.....|+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa--------------------------------~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQA--------------------------------DKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh--------------------------------CccceehhhhhhHHHHhccc
Confidence 1222222222233333333333322221 11111 11222344445555
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
++.|.+.++.+.+.+...-..+...|..+|...|+.++....+..+.+ ++...-..+...-....-.+.|..++.+-.
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 555555555555555444444555555555555555555555544432 333333333333333333444444444333
Q ss_pred hCCCCCCHHHHHHHHHHh
Q 036704 469 SSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~ 486 (634)
.. +|+...+..++..-
T Consensus 310 ~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 310 RR--KPTMRGFHRLMDYH 325 (389)
T ss_pred hh--CCcHHHHHHHHHhh
Confidence 33 45555555555433
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=6.8e-10 Score=98.58 Aligned_cols=294 Identities=13% Similarity=0.097 Sum_probs=191.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLML 367 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~ 367 (634)
+.+.++|.++|-+|.+.. +-+..+-.+|-+.|.+.|.++.|+.++..+.++.--+...
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q--------------------- 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ--------------------- 105 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH---------------------
Confidence 478899999999998631 2223344566777888999999999988887653211110
Q ss_pred HCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh-----
Q 036704 368 ASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV----- 442 (634)
Q Consensus 368 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----- 442 (634)
-....-.|..-|...|-+|.|+.+|..+.+.+.- -......|+..|-...+|++|+++-+++.+.+..
T Consensus 106 ------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 106 ------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred ------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 0112334455667777788888888777764432 3445566777787888888888777766542222
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 443 ---SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 443 ---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
.|.-|...+....+.+.|..++.+..+.+.+ ....-..+.+.....|+++.|.+.++.+.+. +..--..+...|.
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~ 256 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 3444555556667788888888888776422 2333334556677788888888888888765 4444456677788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HH--hcCChH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI-YA--SSGKWE 595 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~--~~g~~~ 595 (634)
.+|...|+.++...++.++ ...+.......+...-....-.+.|...+.+-+...|.--. +..++.. +. ..|...
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k 335 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAK 335 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchh
Confidence 8888888888888888777 44455555555555555555567777777777777775443 3334333 22 335577
Q ss_pred HHHHHHHHHHhCCCcCCC
Q 036704 596 EVARLMGSMKERGVRKVP 613 (634)
Q Consensus 596 ~A~~~~~~~~~~g~~~~~ 613 (634)
+.+..++.|....++..|
T Consensus 336 ~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 336 ESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred hhHHHHHHHHHHHHhhcC
Confidence 778888888876666555
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-08 Score=93.95 Aligned_cols=195 Identities=11% Similarity=-0.000 Sum_probs=148.3
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEAL 461 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 461 (634)
.-..++++.|..+-++.++.+.. +...+-.-..++...|+.++|.-.|..... .+...|.-|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 34566777777777777665543 444454445677788899998888886653 56778999999999999999998
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH-HHhc-ccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 462 KLFRRMRSSGVRPNHVTLVGVL-TACS-HVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 462 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.+-++.... +.-+..+...+- ..+. ...--++|.+++++.. .+.|+ ....+.+.+.+...|..+.++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 887776654 234556655552 3333 3334578888988877 55675 445677889999999999999999988
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 539 -AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 539 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
...||....+.|...+...+.+.+|.+.|..++.++|++..+..-+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 7789999999999999999999999999999999999887666554
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.5e-08 Score=91.20 Aligned_cols=442 Identities=11% Similarity=0.106 Sum_probs=245.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCC
Q 036704 51 FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGS 130 (634)
Q Consensus 51 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 130 (634)
+.-+....++..|+.+++.-... +-.-...+-..+..++...|++++|...+..+.+.. .++...+-.|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 55566777888888888766543 222222344445566677888888888888777654 5555566666666666778
Q ss_pred hHHHHHHhccCCCCCccchHHHH-HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHH
Q 036704 131 LEDARMVFDEMPQRNVVSWTAMI-AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIK 209 (634)
Q Consensus 131 ~~~A~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (634)
+.+|..+-...++ ....+.|+ ..-.+.++-++-..+-+.+.+. .-|
T Consensus 107 Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~Ed----------------------------- 153 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LED----------------------------- 153 (557)
T ss_pred HHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHH-----------------------------
Confidence 8888777665443 22233333 3333445544444443333321 011
Q ss_pred hcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHH-HHHHHHcC
Q 036704 210 SEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNT-IIAGVASC 288 (634)
Q Consensus 210 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~-li~~~~~~ 288 (634)
..+|.+..--.-.+.+|.+++.++...++ +....|. +.-+|.+.
T Consensus 154 ---------qLSLAsvhYmR~HYQeAIdvYkrvL~dn~--------------------------ey~alNVy~ALCyyKl 198 (557)
T KOG3785|consen 154 ---------QLSLASVHYMRMHYQEAIDVYKRVLQDNP--------------------------EYIALNVYMALCYYKL 198 (557)
T ss_pred ---------HHhHHHHHHHHHHHHHHHHHHHHHHhcCh--------------------------hhhhhHHHHHHHHHhc
Confidence 11222222223345556666655544332 2222222 23355566
Q ss_pred CChhHHHHHHHHHhhCCCCCCH-hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc------CHhHHHH
Q 036704 289 SNANEAMSLFSEMGDRELIPDG-LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH------QAGELFR 361 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~------~~~~a~~ 361 (634)
.-++-+.++++--.+. -||+ ...+...+...+.-+-..|..-.+.+.+.+- ..-.....++++ ..+.|++
T Consensus 199 DYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~-~~~~f~~~l~rHNLVvFrngEgALq 275 (557)
T KOG3785|consen 199 DYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID-QEYPFIEYLCRHNLVVFRNGEGALQ 275 (557)
T ss_pred chhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc-ccchhHHHHHHcCeEEEeCCccHHH
Confidence 6666666666655443 2332 2333333333332222233333333332221 111222222222 4456666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-------ChHHHHHHHh
Q 036704 362 LFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG-------SLGSARELFN 434 (634)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~ 434 (634)
++-.+... -| ..-..++--|.+.+++.+|..+.+++. ...|-..+...+ .++..| .+.-|.+.|+
T Consensus 276 VLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgv--v~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 276 VLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGV--VFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred hchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHH--HHHHhhhhcCcHHHHHHHHHHHH
Confidence 65554432 22 223345556788889988888766542 111222222222 222333 3555666666
Q ss_pred cCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCC
Q 036704 435 FMED-----PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGII 509 (634)
Q Consensus 435 ~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 509 (634)
-.-+ ..+..-.++.+.+.-..++++++.++..+..-- .-|...-..+..+.+..|++.+|+++|-.+... .+
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i- 424 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI- 424 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-
Confidence 5432 233345566777777778899998888887653 333333345788889999999999999887632 22
Q ss_pred CChhHH-HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 510 PTRERR-SCVVDLLARAGRVHEAEDFINQMAFDDDIVVW-KSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 510 ~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
.+..+| ..|..+|.+.++++-|++++-++..+.+..++ ..+...|.+.+.+=-|-+.|..+-..+|.
T Consensus 425 kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 344555 45668999999999999999888655554444 44456688889888888888888777775
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=5.6e-08 Score=93.75 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=121.0
Q ss_pred cCChHHHHHHHhcCCCCC-hhhHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 423 CGSLGSARELFNFMEDPD-VVSWSSLIVGYA--QFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 423 ~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
.+..+.+.++-..+.... ...+.+++.... +...+..+.+++...-+....-........+......|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345667777777766422 234444444432 22347788888888776632222455666677788899999999999
Q ss_pred H--------HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHH
Q 036704 500 R--------IMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-----AFDDD----IVVWKSLLASCKTHGNVDV 562 (634)
Q Consensus 500 ~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~l~~~~~~~g~~~~ 562 (634)
. .+. .+...+.+...++..+.+.++.+.|..++.+. ...+. ..++..++..-.+.|+.++
T Consensus 400 ~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 444 23344566677888898988877777777665 11222 2344444555567899999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 563 GKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 563 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
|..+++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999999999998865 457777664433
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=4.3e-10 Score=110.77 Aligned_cols=232 Identities=19% Similarity=0.182 Sum_probs=180.0
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHh-----C-CCCchhH-HHHHHHHHhhcCChHHHHHHHhcCCC--------
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKT-----G-LALDVFV-MNGLMDMYVKCGSLGSARELFNFMED-------- 438 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 438 (634)
-..|+..+...|...|+++.|...++...+. | ..|.+.+ .+.+...|...+++++|..+|+.+..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3457777999999999999999999988854 2 1223333 34477889999999999999998762
Q ss_pred --CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC-
Q 036704 439 --PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSS-----G-VRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG- 507 (634)
Q Consensus 439 --~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 507 (634)
|. ..+++.|...|.+.|++++|..++++..+- | ..|. ...++.+...+...+++++|..+++...+.+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 22 236778888899999999998888876432 1 1223 23466777888999999999999987765533
Q ss_pred -CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 508 -IIPT----RERRSCVVDLLARAGRVHEAEDFINQM---------AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 508 -~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
+.++ ..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 467889999999999999999999987 1122 356888999999999999999999988765
Q ss_pred ----cC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 573 ----ID---PTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 573 ----~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.. |+...+|..|+.+|.++|++|+|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33 4455688899999999999999999998876
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=9.2e-12 Score=81.97 Aligned_cols=50 Identities=32% Similarity=0.574 Sum_probs=48.6
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcC
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTS 322 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 322 (634)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.6e-06 Score=87.33 Aligned_cols=465 Identities=12% Similarity=0.091 Sum_probs=269.0
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCC--CCccchH----HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 036704 118 HNHILNMYGKCGSLEDARMVFDEMPQ--RNVVSWT----AMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRAC 191 (634)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 191 (634)
+..+.+.|.+.|-...|++.+..+.. +.++.-+ --+-.|.-.-.++.+.+.++.|...++..+..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55677788888988889888877653 1111111 01223444457888999999999888888877766666666
Q ss_pred hcCCCchhHhHHHHHHHHh-----------cCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcc------------
Q 036704 192 SGLCCVGLGRQLHAHVIKS-----------EHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDIT------------ 248 (634)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------ 248 (634)
...-..+...++|+..+.. ++..|+.+.-..|.+.++.|++.+.+++.++-.--|+.
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 5555555566666665432 34567778888999999999999999988654311111
Q ss_pred -------------------h--HH----HHHHHhhc----------------cchHHHHHhcCCC--CChhhHHHHHHHH
Q 036704 249 -------------------S--WG----SMIDGFSK----------------LDFARTVFNEMES--PNLASWNTIIAGV 285 (634)
Q Consensus 249 -------------------~--~~----~ll~~~~~----------------~~~a~~~~~~~~~--~~~~~~~~li~~~ 285 (634)
. |. ..|..|.+ .+-.+.+.+.+.- .....-+-|+.-.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 0 00 01111100 0001111111000 1111122233333
Q ss_pred HcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHH-H---HHHH------HHHhCC--------------
Q 036704 286 ASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGM-Q---IHSY------IIKKGF-------------- 341 (634)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~---~~~~------~~~~~~-------------- 341 (634)
-+.++..--..+++.....|. -|..+++++.+.|..+++-.+-. + .++. ..++..
T Consensus 849 EkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 444455555555666666653 36667777766665543321111 0 0000 000000
Q ss_pred ---------------------CCChhHHhHHHhcCHhHHHHHHHHHHHCCCC--CCHhHHHHHHHHhhccccHHHHHHHH
Q 036704 342 ---------------------YSNVPVCNAILQHQAGELFRLFSLMLASQTK--PDHITFNDVMGACAAMASLEMGTQLH 398 (634)
Q Consensus 342 ---------------------~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~ 398 (634)
..|...|+..+...-.--..+.++..+.+++ .|+...+..+.++...+-+.+-.+++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 1112222222211111111344444444432 34455556666777777777777777
Q ss_pred HHHHHhC--CCCchhHHHHHHH---------------------------HHhhcCChHHHHHHHhcCCC-----------
Q 036704 399 CYIMKTG--LALDVFVMNGLMD---------------------------MYVKCGSLGSARELFNFMED----------- 438 (634)
Q Consensus 399 ~~~~~~~--~~~~~~~~~~l~~---------------------------~~~~~g~~~~A~~~~~~~~~----------- 438 (634)
++++-.+ +.-+...-|.|+- .....+-+++|..+|+...-
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~ 1087 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN 1087 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7665211 1111112222221 22233445666666664431
Q ss_pred --------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 036704 439 --------------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQN 504 (634)
Q Consensus 439 --------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 504 (634)
..+..|+.+..+-.+.|...+|++-|-+ ..|+..|.-+++...+.|.+++-.+.+..+++
T Consensus 1088 i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3445788888888888888888877644 23788899999999999999999999988887
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 505 EYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 505 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
+ .-.|...+ .|+-+|++.+++.+-++++. .|+..-...+..-|...|.++.|.-+|.. .+-|..|
T Consensus 1162 k-~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~L 1226 (1666)
T KOG0985|consen 1162 K-VREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKL 1226 (1666)
T ss_pred h-hcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHH
Confidence 6 66666554 68899999999988877764 46666777788888888888888777764 3346667
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 036704 585 CNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~ 604 (634)
+..+...|+++.|...-++.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 77777777777776665544
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1e-11 Score=81.73 Aligned_cols=50 Identities=26% Similarity=0.608 Sum_probs=46.2
Q ss_pred CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 036704 144 RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSG 193 (634)
Q Consensus 144 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 193 (634)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=1.9e-06 Score=84.22 Aligned_cols=317 Identities=12% Similarity=0.071 Sum_probs=178.5
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH 354 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 354 (634)
...|++|.+.|.+.|.+++|.++|++.... ..+..-|..+..+|+.-.....+..+- ...+.+..+. -..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e-------d~~ 317 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE-------DDV 317 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh-------hhh
Confidence 457999999999999999999999997765 233344445544444322111111110 0000000000 000
Q ss_pred CHhHHHHHHHHHHHCC-----------CCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh-CCC----CchhHHHHHHH
Q 036704 355 QAGELFRLFSLMLASQ-----------TKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT-GLA----LDVFVMNGLMD 418 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~~~~l~~ 418 (634)
+.+-.+..|+.+...+ -+-+..++..-+ -...|+..+-...+.++++. ++. .-...|..+..
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHH
Confidence 2222333333333221 112222332222 23345666667777777642 111 11235677788
Q ss_pred HHhhcCChHHHHHHHhcCCCCChhh-------HHHHHHHHHhcCChHHHHHHHHHHHhCCCC----------C-------
Q 036704 419 MYVKCGSLGSARELFNFMEDPDVVS-------WSSLIVGYAQFGCGEEALKLFRRMRSSGVR----------P------- 474 (634)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----------p------- 474 (634)
.|-..|+++.|..+|++..+.+..+ |..-...-.++.+++.|+++.++....--. |
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 8888888888888888887644433 444444445667778888877776532111 1
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCC-CC-HHHHHHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFD-DD-IVVWKSL 550 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~-~~~~~~l 550 (634)
+...|...++.-...|-++....+|+++..- .+- ++.+.-.....+....-++++.+++++- -++ |. ...|+..
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidL-ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDL-RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 1234555555555667788888888888764 322 2333333444555667788888888876 222 23 3366665
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 551 LASCKT---HGNVDVGKRAAENILKIDPTN--SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 551 ~~~~~~---~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+..+.+ ....+.|..+|+++++..|+. .+.|...+..-.+-|.-..|..+++++-
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555432 236788999999998888752 2344444555556688888888888754
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=3.7e-08 Score=98.63 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=80.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHcc---
Q 036704 52 SSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKC--- 128 (634)
Q Consensus 52 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 128 (634)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |.+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 3366778888888888776543 44445566777788888888888888888888775 44444444555554222
Q ss_pred --CChHHHHHHhccCCC--CCccchHHHHHHHHhCCCh-hHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHH
Q 036704 129 --GSLEDARMVFDEMPQ--RNVVSWTAMIAGCSQNGQE-NAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQL 203 (634)
Q Consensus 129 --g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 203 (634)
.+.+....+++++.. |...+...+.-.+.....+ ..+...+..+...|+|+ +|+.|-..|....+.+-...+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 245555666665543 2222222222222221122 24555666667777644 344444444433333333344
Q ss_pred HHH
Q 036704 204 HAH 206 (634)
Q Consensus 204 ~~~ 206 (634)
+..
T Consensus 166 ~~~ 168 (517)
T PF12569_consen 166 VEE 168 (517)
T ss_pred HHH
Confidence 333
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=5.2e-09 Score=108.65 Aligned_cols=241 Identities=11% Similarity=0.030 Sum_probs=170.7
Q ss_pred CHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhh---------ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 036704 355 QAGELFRLFSLMLASQTKPD-HITFNDVMGACA---------AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG 424 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (634)
..++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+.++. +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 345666666666654 343 334444443332 345688999999999988755 6777888888899999
Q ss_pred ChHHHHHHHhcCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHH
Q 036704 425 SLGSARELFNFMED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYR 500 (634)
Q Consensus 425 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 500 (634)
++++|...|++..+ |+ ...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998764 43 4578888889999999999999999999874 43 2233334445666889999999999
Q ss_pred HHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cC
Q 036704 501 IMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILK---ID 574 (634)
Q Consensus 501 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~ 574 (634)
++... ..| +...+..+..++...|++++|.+.++++ ...|+ ....+.+...|...| +.|...++++.+ ..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98754 234 4455677888889999999999999988 44554 344555556667766 477777777766 33
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
|.++.. ...+|.-.|+-+.+... +++.+.|
T Consensus 507 ~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 444433 55567777887777666 7777654
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=4.8e-09 Score=96.92 Aligned_cols=199 Identities=13% Similarity=0.077 Sum_probs=162.1
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVG 450 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 450 (634)
....+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++...+ .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 3456777888999999999999999999877533 567788888999999999999999997763 445577888889
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVH 529 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 529 (634)
+...|++++|...+++..+....| ....+..+...+...|++++|...+++.... .+.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 999999999999999998753223 3556777888899999999999999998863 2334667888899999999999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 530 EAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 530 ~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
+|.+.+++. .. +.+...+..++..+...|+.++|....+.+....|
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999987 32 33566777788888899999999999888776544
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=4.1e-07 Score=88.98 Aligned_cols=447 Identities=11% Similarity=0.070 Sum_probs=260.7
Q ss_pred cCChHHHHHHhhcccCCCCccchHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHH
Q 036704 25 CMLLDQAGEVVDSFLRRFDDIWDFDLFSS--LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKV 102 (634)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (634)
.+.+..-....+.+.+..|.+-..-.+.+ +..-|+-++|.+....-.+. -.-+...|+.+.-.+....++++|.++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 35566666666777767777666222444 77788999998888877763 344555677777777777889999999
Q ss_pred HHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCC-CC
Q 036704 103 HDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSG-LM 178 (634)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~ 178 (634)
|....+.+ +.|...+.-+.-.-+..|+++..........+ .....|..+..+.--.|+...|..++++..+.. -.
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99988876 56667776665555666777776666555543 344578888888888899999999998887754 24
Q ss_pred CChhhHHHHHHH------hhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHH
Q 036704 179 PDQFTFGSIIRA------CSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGS 252 (634)
Q Consensus 179 p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 252 (634)
|+...|...... ....|..+.|.+.+..-... +......-..-...+.+.+++++|..++..+..+++.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd---- 251 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD---- 251 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch----
Confidence 666665443332 24566666666655443322 1111222334556677888888888888887776542
Q ss_pred HHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHH-HHHHHHhhC---CCCCCHhHHHHHHHHhcCCCChHH
Q 036704 253 MIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAM-SLFSEMGDR---ELIPDGLTVRSLLCACTSPLSLYQ 328 (634)
Q Consensus 253 ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~ 328 (634)
|...|-.+..++.+-.+.-+++ .+|....+. ...|-....+. .....-.+.
T Consensus 252 ---------------------n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~ 306 (700)
T KOG1156|consen 252 ---------------------NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEI 306 (700)
T ss_pred ---------------------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHH
Confidence 2222223333332222222222 344333221 11111111111 111111222
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHhc--CHhHHHHHHHHHH----HCC----------CCCCHh--HHHHHHHHhhcccc
Q 036704 329 GMQIHSYIIKKGFYSNVPVCNAILQH--QAGELFRLFSLML----ASQ----------TKPDHI--TFNDVMGACAAMAS 390 (634)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~a~~~~~~~~----~~~----------~~~~~~--~~~~ll~~~~~~~~ 390 (634)
..+++....+.|+.+-.....++.+. ..+-..++...+. ..| -+|+.. |+-.+...+-+.|+
T Consensus 307 vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 23334444444444333333333322 1111111111111 111 144443 45567788889999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRM 467 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 467 (634)
++.|...++.++++.+. -+..|..-...+...|++++|..++++..+ +|...=+--..-..+.++.++|.++....
T Consensus 387 ~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 387 YEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 99999999988876432 344566667888999999999999998875 33333234455567788899999999888
Q ss_pred HhCCCCC--C----HHHHHHH--HHHhcccCCHHHHHHHHHHHHHH
Q 036704 468 RSSGVRP--N----HVTLVGV--LTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 468 ~~~~~~p--~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
.+.|... + .-.|..+ ..+|.+.|++..|.+-|..+.+.
T Consensus 466 Tr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 466 TREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 8876410 1 1112222 34667778887777766665543
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=3.1e-09 Score=110.27 Aligned_cols=212 Identities=14% Similarity=0.053 Sum_probs=166.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh---------hcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCC
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYV---------KCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGC 456 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 456 (634)
+++++|...+++..+..+. +...+..+..++. ..+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4578999999999877654 4555655555443 23457899999998764 355678888888999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Q 036704 457 GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
+++|...++++.+.+ +.+...+..+...+...|++++|...++++.+ ..|+. ..+..+...+...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999874 22467788888899999999999999999985 45543 23334455567789999999999
Q ss_pred HhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 536 NQM--AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 536 ~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++. ...| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 987 2235 45567778888999999999999999998899988889999998889888 4888888877653
No 73
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.20 E-value=5.9e-08 Score=95.60 Aligned_cols=439 Identities=11% Similarity=0.064 Sum_probs=228.7
Q ss_pred hhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChh
Q 036704 18 YWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQ 97 (634)
Q Consensus 18 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (634)
-+.+|..++++++|+++.+..-.|.-.....+.++++...|.-++|-++-+ +.-.=.+.|+.|.+.|.+.
T Consensus 563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~----------sdgd~laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE----------SDGDGLAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc----------ccCccHHHHHHHHHcCCch
Confidence 456777777777777776665555333333345556666666666543321 1112234566777777777
Q ss_pred HHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 036704 98 LGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGL 177 (634)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 177 (634)
.|.+....-.+ +..|......+..++.+..-+++|-.+|+++..++. .+.+|-+..-+.+|.++-+-. .
T Consensus 633 ~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfa----f 701 (1636)
T KOG3616|consen 633 KAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFA----F 701 (1636)
T ss_pred HHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhh----C
Confidence 66655322211 234555566666666666666777777766543221 233332322233333332211 0
Q ss_pred CCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHh
Q 036704 178 MPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGF 257 (634)
Q Consensus 178 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 257 (634)
+....+. -+ .--..+...|+++.|...|-+..
T Consensus 702 p~evv~l-------------------ee---------------~wg~hl~~~~q~daainhfiea~-------------- 733 (1636)
T KOG3616|consen 702 PEEVVKL-------------------EE---------------AWGDHLEQIGQLDAAINHFIEAN-------------- 733 (1636)
T ss_pred cHHHhhH-------------------HH---------------HHhHHHHHHHhHHHHHHHHHHhh--------------
Confidence 0000110 00 00111222333333333332210
Q ss_pred hccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHH
Q 036704 258 SKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYII 337 (634)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 337 (634)
..---+.+......|.+|+.+++.++... .-..-|..+...|+..|+++.|.++|.+.
T Consensus 734 -------------------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~- 791 (1636)
T KOG3616|consen 734 -------------------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA- 791 (1636)
T ss_pred -------------------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-
Confidence 00112334455566677777776665542 22334556666666667666666655322
Q ss_pred HhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036704 338 KKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM 417 (634)
Q Consensus 338 ~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 417 (634)
..++-.+..|.+.|+++.|.++-.+. .|...+...|-+-.
T Consensus 792 --------------------------------------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiaka 831 (1636)
T KOG3616|consen 792 --------------------------------------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKA 831 (1636)
T ss_pred --------------------------------------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhH
Confidence 12334455677777777776665443 34444555666666
Q ss_pred HHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 036704 418 DMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQ 497 (634)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 497 (634)
.-+-..|++.+|.++|-.+..|+. -|..|-++|..++.+++.++-.... -..|-..+..-+...|+++.|..
T Consensus 832 edldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 832 EDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHH
Confidence 667778888888888888777774 3567778888888777766532111 13455556666777788877777
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC---------------CCHH--H------HHHHHHHH
Q 036704 498 LYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFD---------------DDIV--V------WKSLLASC 554 (634)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~--~------~~~l~~~~ 554 (634)
.|-+... |.+-+++|...+.|++|.++-+.-+-. .+.. . +..-+...
T Consensus 904 ~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a 973 (1636)
T KOG3616|consen 904 HFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFA 973 (1636)
T ss_pred HHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhh
Confidence 7665542 455566666667777766665543110 0100 0 01111112
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+..+.++-|..+-+-..+ ..-+.....++.-+...|++++|-+.+-+..+.
T Consensus 974 ~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 974 ADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 233334444444333322 123345556666777888888887776655543
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=2.8e-09 Score=90.46 Aligned_cols=161 Identities=18% Similarity=0.196 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLL 522 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 522 (634)
...|.-+|...|+...|..-+++.++.. +-+..++..+...|.+.|+.+.|.+-|++..+ +.| +..+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 3345556666666666666666666653 22355666666666666777777666666663 333 445566666666
Q ss_pred HhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH
Q 036704 523 ARAGRVHEAEDFINQMAFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVA 598 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 598 (634)
|..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...+++.++.+|+.+.....++....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 66667777777666662222 24466666666666777777777777777777776666666766677777777777
Q ss_pred HHHHHHHhCC
Q 036704 599 RLMGSMKERG 608 (634)
Q Consensus 599 ~~~~~~~~~g 608 (634)
.+++.....+
T Consensus 194 ~~~~~~~~~~ 203 (250)
T COG3063 194 LYLERYQQRG 203 (250)
T ss_pred HHHHHHHhcc
Confidence 6666665544
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=6.3e-07 Score=89.50 Aligned_cols=478 Identities=13% Similarity=0.080 Sum_probs=274.0
Q ss_pred cCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHh---hccCChhHH-------------------HH----HHHHHHHcC
Q 036704 57 QNLYNEALVAFDFLQNNTNFRIRPSTYADLISAC---SSLRSLQLG-------------------RK----VHDHILSSK 110 (634)
Q Consensus 57 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a-------------------~~----~~~~~~~~~ 110 (634)
.++.+.++.-+...... +.+.++.++-.+...+ .-.++.+++ .- .+.++....
T Consensus 240 ~~~~~~~i~s~~~~l~~-~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLR-SWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCchHHHHhhhHHhhc-ccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 45566677666666655 5555555554443332 223333333 11 122222233
Q ss_pred CCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh-HHH
Q 036704 111 CQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFT-FGS 186 (634)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ 186 (634)
+.-++.+|..+.-++.+.|+++.+.+.|++... .....|+.+-..+...|.-..|..+++.-....-.|+..+ +-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455677777777777788888888888877654 3345677777777788887888887776554332243333 322
Q ss_pred HHHHhh-cCCCchhHhHHHHHHHHhc--C--CCChhHHHHHHHHHHhc----C-------ChhHHHHHHhccCCCCcchH
Q 036704 187 IIRACS-GLCCVGLGRQLHAHVIKSE--H--GSHLISQNALIAMYTKF----D-------RILDAWNVFSSIARKDITSW 250 (634)
Q Consensus 187 ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~~~~----g-------~~~~A~~~~~~~~~~~~~~~ 250 (634)
.-..|. +.+..+++..+-.++.... . ...+..|..+.-+|... . ...++.+.+++..+.|+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~--- 475 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP--- 475 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC---
Confidence 233333 4566666666665555521 1 11122233333232221 0 11122233333322222
Q ss_pred HHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHH
Q 036704 251 GSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGM 330 (634)
Q Consensus 251 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 330 (634)
.|+..-..+.--|+..++.+.|++...+..+-+-.-+...+..+.-.+...+++..|.
T Consensus 476 ----------------------~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 476 ----------------------TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred ----------------------CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 2333333344456777889999999999888766777888888888888888999999
Q ss_pred HHHHHHHH-hCCCCChhHHhHHH---hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc------ccHHHHHHHHHH
Q 036704 331 QIHSYIIK-KGFYSNVPVCNAIL---QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAM------ASLEMGTQLHCY 400 (634)
Q Consensus 331 ~~~~~~~~-~~~~~~~~~~~~ll---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~ 400 (634)
.+.+.... .|..........=+ -++.++++.+...+.. .+-.. ++-....+....
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~---------------~we~~~~~q~~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA---------------LWEAEYGVQQTLDEGKLLRLKAG 598 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH---------------HHHhhhhHhhhhhhhhhhhhhcc
Confidence 88887654 33211111111111 1133444433333322 11111 111111111111
Q ss_pred HHH--hCCCCchhHHHHHHHHHh-h--cCChHHHHHHHhcCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 401 IMK--TGLALDVFVMNGLMDMYV-K--CGSLGSARELFNFMEDPDV------VSWSSLIVGYAQFGCGEEALKLFRRMRS 469 (634)
Q Consensus 401 ~~~--~~~~~~~~~~~~l~~~~~-~--~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 469 (634)
+.- ....-...++..+..... + .-..+.....+.....|+. ..|......+.+.+..++|...+.+...
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 110 011111223332222211 1 1111111122222222332 2455667778888999999888888776
Q ss_pred CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CH
Q 036704 470 SGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAED--FINQM-AFDD-DI 544 (634)
Q Consensus 470 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~~-~~ 544 (634)
.. +-....|......+...|.+++|.+.|.... .+.|+ +.+..++..++.+.|+..-|.. ++.++ ...| +.
T Consensus 679 ~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 679 ID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred cc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 53 3346667776677888899999999999887 56774 6678899999999998888887 88877 6666 68
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
..|..++..+.+.|+.+.|.+.|..+.++.+.+|.
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 89999999999999999999999999998877654
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=5.3e-07 Score=88.17 Aligned_cols=424 Identities=13% Similarity=0.084 Sum_probs=236.5
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHH
Q 036704 54 LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLED 133 (634)
Q Consensus 54 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 133 (634)
+-..+.+...+.+.+.+.+. ++-...+.....-.+...|+.++|..........+ ..+...|..+.-.+....++++
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHH
Confidence 44566777777777777763 56666677666666777788888888877776644 4455666666666666677888
Q ss_pred HHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhcCCCchhHhHHHHHHHH
Q 036704 134 ARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQ-FTFGSIIRACSGLCCVGLGRQLHAHVIK 209 (634)
Q Consensus 134 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (634)
|++.+..... .|...|.-+--.-++.|+++.....-..+.+. .|+. ..|.....+.--.|+...|..+++...+
T Consensus 94 aiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 94 AIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776542 34555655555555666777666666666553 2332 3344444455555555555555555554
Q ss_pred hcC-CCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcC
Q 036704 210 SEH-GSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASC 288 (634)
Q Consensus 210 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 288 (634)
... .|+...+......+- -.......
T Consensus 172 t~~~~~s~~~~e~se~~Ly-----------------------------------------------------~n~i~~E~ 198 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLY-----------------------------------------------------QNQILIEA 198 (700)
T ss_pred hhccCCCHHHHHHHHHHHH-----------------------------------------------------HHHHHHHc
Confidence 431 233222221111100 11233445
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHH
Q 036704 289 SNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLA 368 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~ 368 (634)
|..+.|++.+..-... ..|...+
T Consensus 199 g~~q~ale~L~~~e~~--i~Dkla~------------------------------------------------------- 221 (700)
T KOG1156|consen 199 GSLQKALEHLLDNEKQ--IVDKLAF------------------------------------------------------- 221 (700)
T ss_pred ccHHHHHHHHHhhhhH--HHHHHHH-------------------------------------------------------
Confidence 5566666555443221 0010000
Q ss_pred CCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHH-HHHhcCCC-------CC
Q 036704 369 SQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAR-ELFNFMED-------PD 440 (634)
Q Consensus 369 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~-------~~ 440 (634)
-..-...+.+.+++++|..++..++..++. +...|-.+..++.+-.+.-++. .+|....+ |-
T Consensus 222 ---------~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 222 ---------EETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred ---------hhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 001112334455555555555555554422 2333333344443222222222 44444332 11
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-C------------
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY-G------------ 507 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~------------ 507 (634)
....+.+ .-..-.+..-+++..+.+.|+++-...+.++ |-.-...+-..++.-.+.... |
T Consensus 292 Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 292 RLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred hccHHHh----CcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 1111111 1112234555667777788766543333333 222111111111111111100 1
Q ss_pred CCCChhHHH--HHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 508 IIPTRERRS--CVVDLLARAGRVHEAEDFINQM-AFDDDIV-VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 508 ~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
-+|+...|. .++..+-+.|+++.|..+++.. ...|+.. .|..=.+.+...|+.++|...++++.+++-.|..+...
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 134444443 5667888999999999999988 7677644 55566677889999999999999999998888877778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 584 LCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
-+.-..++++.++|.++..+..+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 88888899999999999998887774
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.6e-09 Score=96.26 Aligned_cols=227 Identities=16% Similarity=0.043 Sum_probs=193.5
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhH-HHHHHHHHh
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSW-SSLIVGYAQ 453 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~ 453 (634)
=-.-+.++|.+.|-+.+|...++...+.- |-+.+|-.|-.+|.+..+...|+.++.+-.+ |..+|| .-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 34567789999999999999999888764 4566778888999999999999999998875 555554 446777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAED 533 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 533 (634)
.++.++|.++|+...+.. ..+......+...|.-.++++-|...|+++.+- |+ .+...|+.+.-+|.-.+.++-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999998874 335666777778888899999999999999975 65 467888999999999999999999
Q ss_pred HHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 534 FINQM---AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 534 ~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.|++. ...| -..+|-.+.......||+..|.+.|+-++..+|++..++++|+..-.+.|+.++|..++....+..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99987 3334 366899999999999999999999999999999999999999999999999999999999888754
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=1.9e-09 Score=102.18 Aligned_cols=214 Identities=11% Similarity=-0.010 Sum_probs=119.0
Q ss_pred CHhHHHHHHHHHHHCC-CCCC--HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHH
Q 036704 355 QAGELFRLFSLMLASQ-TKPD--HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARE 431 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (634)
..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++..+..+. +...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 5566666666666432 1222 234555566667777777777777777766543 56667777777777777777777
Q ss_pred HHhcCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 432 LFNFMED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 432 ~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
.|+...+ |+ ...|..+...+...|++++|.+.+++..+. .|+..........+...+++++|...+.+... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 7776643 32 345666666667777777777777777665 33322111112223345667777777755443 22
Q ss_pred CCChhHHHHHHHHHHhcCChHHH--HHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 509 IPTRERRSCVVDLLARAGRVHEA--EDFINQM-AFDD-----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
.|+...+ .++. ...|+..++ .+.+.+. ...+ ....|..++..+...|++++|+..|+++++.+|.
T Consensus 196 ~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3332221 2222 223443332 2222211 1111 2345666777777777777777777777777654
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=7.7e-07 Score=82.22 Aligned_cols=288 Identities=11% Similarity=-0.003 Sum_probs=196.0
Q ss_pred HcCCChhHHHHHHHHHhhC-CCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHH
Q 036704 286 ASCSNANEAMSLFSEMGDR-ELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFS 364 (634)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~ 364 (634)
+..++...|..++-.+... -++-+...+..+.+.+...|+.+++...|+.....+
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d------------------------ 262 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN------------------------ 262 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC------------------------
Confidence 3344444444444333332 244456667777777777887777777776655432
Q ss_pred HHHHCCCCCCHh-HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---
Q 036704 365 LMLASQTKPDHI-TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD--- 440 (634)
Q Consensus 365 ~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 440 (634)
|+.. ......-.+.+.|+.+....+...+....-. +...|-.-.......++++.|+.+-+...+.+
T Consensus 263 --------py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~ 333 (564)
T KOG1174|consen 263 --------PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN 333 (564)
T ss_pred --------hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc
Confidence 1111 1111112234555666655555555433211 22233333444556678999999998877543
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH-
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV- 519 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~- 519 (634)
...+-.-...+...|++++|.-.|+...... +-+...|..|+.+|...|.+.+|..+-+...+ -+..+..+...+.
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGT 410 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhhhhcc
Confidence 3344444567888999999999999988762 23689999999999999999999998888775 3444555555442
Q ss_pred HHH-HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 520 DLL-ARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 520 ~~~-~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
..+ .....-++|.+++++. ...|+ ......+...|...|.++.++.++++.+...|+ ......|++.+...+.+++
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHH
Confidence 222 2334468899999987 77775 568888999999999999999999999999884 5588999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 036704 597 VARLMGSMKERGVR 610 (634)
Q Consensus 597 A~~~~~~~~~~g~~ 610 (634)
|.+.|...++.+..
T Consensus 490 am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 490 AMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHhcCcc
Confidence 99999988875543
No 80
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=5.7e-07 Score=90.03 Aligned_cols=230 Identities=10% Similarity=0.048 Sum_probs=145.9
Q ss_pred HHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCC--------CCCcccHHHHHHHhhc
Q 036704 21 AFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNF--------RIRPSTYADLISACSS 92 (634)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~ll~~~~~ 92 (634)
.|.--|++|.|.+.++.+... ..|. .+.+-+.+.++.+-|.-.+..|....|. .++ .+=.-+.-....
T Consensus 737 fyvtiG~MD~AfksI~~IkS~--~vW~-nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD--SVWD-NMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh--HHHH-HHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 455669999998888887766 6788 7888888888888777666655433211 121 222223333457
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCC-ccchHHHHHHHHhCCChhHHHHHHHH
Q 036704 93 LRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRN-VVSWTAMIAGCSQNGQENAAIELYVQ 171 (634)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 171 (634)
.|.+++|+.+|.+-... ..|=..|-..|.|++|.++-+.-.+-. ..+|......+-..++.+.|++.|++
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 79999999999887654 345667788899999999887644322 23666666777778888888888875
Q ss_pred HH----------HCCC---------CCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 036704 172 ML----------QSGL---------MPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRI 232 (634)
Q Consensus 172 m~----------~~g~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 232 (634)
-. .... ..|...|.-.-..+-..|+.+.|+.++..... |-++++..|-.|+.
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKT 954 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCc
Confidence 32 1110 01111222222222244555555555544332 34455555666666
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 036704 233 LDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMG 302 (634)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 302 (634)
++|-++-++- .|......+.+.|-..|++.+|..+|.+.+
T Consensus 955 ~kAa~iA~es------------------------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 955 DKAARIAEES------------------------------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHhc------------------------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666665542 466777788899999999999999888764
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=4.9e-08 Score=96.52 Aligned_cols=199 Identities=17% Similarity=0.202 Sum_probs=103.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhC-----C-CCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 280 TIIAGVASCSNANEAMSLFSEMGDR-----E-LIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 280 ~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
.+...|...+++++|..+|+++... | ..|. ..+++.|-.+|.+.|++++|...++.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A---------------- 309 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA---------------- 309 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH----------------
Confidence 3556677777777777777776432 1 1222 244566666777778777777765443
Q ss_pred hcCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHhhccccHHHHHHHHHHHHHh---CCCC----chhHHHHHHHHHhhcC
Q 036704 353 QHQAGELFRLFSLMLASQTKPDH-ITFNDVMGACAAMASLEMGTQLHCYIMKT---GLAL----DVFVMNGLMDMYVKCG 424 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g 424 (634)
+++++..... ..|.. ..++.+...|+..+.+++|..++....+. -+.+ -..+++.+...|.+.|
T Consensus 310 -------l~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 310 -------LEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred -------HHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 3344441111 12222 24566667778888888888887765532 1111 1234555666666666
Q ss_pred ChHHHHHHHhcCCC----------CC-hhhHHHHHHHHHhcCChHHHHHHHHHHH----hCCC-CCC-HHHHHHHHHHhc
Q 036704 425 SLGSARELFNFMED----------PD-VVSWSSLIVGYAQFGCGEEALKLFRRMR----SSGV-RPN-HVTLVGVLTACS 487 (634)
Q Consensus 425 ~~~~A~~~~~~~~~----------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~-~p~-~~~~~~l~~~~~ 487 (634)
++++|.++++.+.+ +. ...++.|...|.+.+.+.+|.++|.+.. ..|. .|+ ..+|..|...|.
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 66666666555431 00 1234444555555555555555544422 1111 112 344555555555
Q ss_pred ccCCHHHHHHHHHHH
Q 036704 488 HVGLVEEGLQLYRIM 502 (634)
Q Consensus 488 ~~g~~~~a~~~~~~~ 502 (634)
..|+++.|.++.+.+
T Consensus 462 ~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKV 476 (508)
T ss_pred HcccHHHHHHHHHHH
Confidence 555555555554443
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.3e-06 Score=79.15 Aligned_cols=446 Identities=13% Similarity=0.082 Sum_probs=234.6
Q ss_pred HhhcCChHHHHHHhhcccCCCCc---cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhH
Q 036704 22 FELCMLLDQAGEVVDSFLRRFDD---IWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQL 98 (634)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (634)
+....++..|+.+++.-..-+.. +.+.=+.-.+.+-|++++|+..|..+.+. -.++......|.....-.|.+.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHH
Confidence 44556788888888754432211 22201223356789999999999999875 45666666777767777888888
Q ss_pred HHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 036704 99 GRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLM 178 (634)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (634)
|..+-... +.++-.-..++..--+.++-++-..+-+.+... ..---+|.+.....-.+.+|+++++.....+
T Consensus 110 A~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 110 AKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 88775433 333333344455555667766665555544332 2222334444444557899999999988753
Q ss_pred CChhhHHHHHHH-hhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHh--cCChhHHHHHHhccCCCCcchHHHHHH
Q 036704 179 PDQFTFGSIIRA-CSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTK--FDRILDAWNVFSSIARKDITSWGSMID 255 (634)
Q Consensus 179 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~ll~ 255 (634)
|+-...+.-+.. |.+..-++.+.+++....+.- +.+....|.......+ .|+..+++ .+++-+.....|- .+.
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E--~k~ladN~~~~~~-f~~ 257 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDE--KKELADNIDQEYP-FIE 257 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHH--HHHHHhcccccch-hHH
Confidence 555555555544 457777888888887776652 2233334433333333 34433322 2222111111111 111
Q ss_pred Hh--------hccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChH
Q 036704 256 GF--------SKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLY 327 (634)
Q Consensus 256 ~~--------~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 327 (634)
-+ ..-+.|++++..+.+--+..--.|+-.|.+.+++.+|..+.+++.- ..|-......+..+ ..|+--
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a--alGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA--ALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH--Hhhhhc
Confidence 11 1123355555544443333444555667788888888887776532 12333333333222 111100
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccccHHHHHHHHHHHHHhCC
Q 036704 328 QGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHI-TFNDVMGACAAMASLEMGTQLHCYIMKTGL 406 (634)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 406 (634)
...+ ...-|...|.-.-.++...|.. .-.++...+.-...++++.-+++.+..-=.
T Consensus 334 gSre-----------------------HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 334 GSRE-----------------------HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred CcHH-----------------------HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000 1222223333333333333222 233444455555666776666666654433
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---hhhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHH
Q 036704 407 ALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD---VVSWS-SLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVT-LVG 481 (634)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ 481 (634)
.-|...+ .+..+++..|.+.+|+++|-++..|+ ..+|. .|.++|.+.+.++.|+.++-++.. ..+..+ ...
T Consensus 391 NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLql 466 (557)
T KOG3785|consen 391 NDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQL 466 (557)
T ss_pred Ccchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHH
Confidence 3233333 35666777777777777777666433 33443 345666677777766655444332 112222 333
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
+...|.+.+.+--|.+.|+.+. ...|+++-|
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 4455666666666666666665 456666555
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3.2e-06 Score=82.01 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=134.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhH--HHHHHH--
Q 036704 51 FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNH--ILNMYG-- 126 (634)
Q Consensus 51 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~-- 126 (634)
+..+.+++++++|.....++... .+-+...+..-+-++...++++.|+.+.+.- +. ..+++. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---ch---hhhcchhhHHHHHHHH
Confidence 44466778899999999988874 4666677888888888888998888554332 11 111111 244444
Q ss_pred ccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHhhcCCCchhHhHHH
Q 036704 127 KCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQF--TFGSIIRACSGLCCVGLGRQLH 204 (634)
Q Consensus 127 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~ 204 (634)
+.+..++|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++. +|.. .-..++.+... .. -
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~-------l~-~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAA-------LQ-V 161 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh-------hh-H
Confidence 778999999999866555655666667788899999999999999987764 3322 11222221111 00 1
Q ss_pred HHHHHhcCCCChhHHH---HHHHHHHhcCChhHHHHHHhccC--------CCCcchHHHHHHHhhccchHHHHHhcCCCC
Q 036704 205 AHVIKSEHGSHLISQN---ALIAMYTKFDRILDAWNVFSSIA--------RKDITSWGSMIDGFSKLDFARTVFNEMESP 273 (634)
Q Consensus 205 ~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 273 (634)
+.+......| ..+|. ...-.++..|++.+|+++++... +.|... +.+ +.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~e--------------Eei-----e~ 221 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNE--------------EEI-----EE 221 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccch--------------hhH-----HH
Confidence 1122222233 22333 33445667899999999987752 111100 000 00
Q ss_pred Ch-hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH
Q 036704 274 NL-ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG 310 (634)
Q Consensus 274 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 310 (634)
.. ..--.|.-.+-..|+.++|.+++...++.. .+|.
T Consensus 222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCc
Confidence 01 112234556778899999999999988774 3444
No 84
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.5e-05 Score=80.50 Aligned_cols=544 Identities=13% Similarity=0.102 Sum_probs=294.8
Q ss_pred hhHHhhcCChHHHHHHhhcccC--CCCcc---chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhcc
Q 036704 19 WDAFELCMLLDQAGEVVDSFLR--RFDDI---WDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSL 93 (634)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (634)
++...+.|=.+.|++-+..+.. +...+ .+..-+..+...-.++.+++.++.|... +++.+..+...+..-|..+
T Consensus 613 AqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~-NirqNlQi~VQvatky~eq 691 (1666)
T KOG0985|consen 613 AQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSA-NIRQNLQIVVQVATKYHEQ 691 (1666)
T ss_pred HHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHH
Confidence 5666677888888888876542 21111 1112344566677788888888888876 7777766666555555554
Q ss_pred CChhHHHHHHHHHHHc-----------CCCCCcchhhHHHHHHHccCChHHHHHHhccCCC-------------------
Q 036704 94 RSLQLGRKVHDHILSS-----------KCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ------------------- 143 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------- 143 (634)
=-.+...++|+....- ++.-|+.+.--.|.+-++.|++.+..++.++-.-
T Consensus 692 lg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~Dql 771 (1666)
T KOG0985|consen 692 LGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQL 771 (1666)
T ss_pred hCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccC
Confidence 4455555555554331 2456777778889999999999999888765430
Q ss_pred C-----Ccc-chH------------HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH------------HHHHHHhhc
Q 036704 144 R-----NVV-SWT------------AMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTF------------GSIIRACSG 193 (634)
Q Consensus 144 ~-----~~~-~~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------------~~ll~~~~~ 193 (634)
| |.. .-+ ..|..|.+.-++.+.-.+.-.+.+-.+. ....- ..|+.-+-+
T Consensus 772 PLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~deLv~EvEk 850 (1666)
T KOG0985|consen 772 PLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQFPVDELVEEVEK 850 (1666)
T ss_pred ceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhccCChHHHHHHHHh
Confidence 1 000 011 1344444443333333333333322211 11111 122223334
Q ss_pred CCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhc------------cCCCCcc-------------
Q 036704 194 LCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSS------------IARKDIT------------- 248 (634)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------------~~~~~~~------------- 248 (634)
.+++..-...++.....|. .|..++|+|...|...++-.+- .+++ ..++|+.
T Consensus 851 RNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 851 RNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred hhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 5555555666666666664 4778999999998886553321 1111 1122321
Q ss_pred ------hHHHHHHHhhc-----cch-------------HHHHHhcCC------CCChhhHHHHHHHHHcCCChhHHHHHH
Q 036704 249 ------SWGSMIDGFSK-----LDF-------------ARTVFNEME------SPNLASWNTIIAGVASCSNANEAMSLF 298 (634)
Q Consensus 249 ------~~~~ll~~~~~-----~~~-------------a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~ 298 (634)
.-|++.+...+ .+. -+++.+++. ..|+..-..-+.++...+-..+-++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 11222222111 000 122222211 134455555666666667777777777
Q ss_pred HHHhhCCCCC--CHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc-CHhHHHHHHHHHHHCCCCCCH
Q 036704 299 SEMGDRELIP--DGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH-QAGELFRLFSLMLASQTKPDH 375 (634)
Q Consensus 299 ~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~a~~~~~~~~~~~~~~~~ 375 (634)
++..-..-.. +...-+.++-...+. +....+++.+.+ .......+.+..+.+ -+++|+.+|+.. ..+.
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL---dnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~ 1078 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL---DNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNV 1078 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh---ccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccH
Confidence 6654322111 111222233222222 222233332222 212222333444444 677777777765 3344
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFG 455 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 455 (634)
.....++. ..++++.|.++-++. -.+..|+.+..+-.+.|.+.+|++-|-+. .|+..|.-.+....+.|
T Consensus 1079 ~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1079 SAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred HHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcC
Confidence 44444443 234555555544332 25678889999999999999998877655 45557888899999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
.+++-.+++...+++.-.|... +.++-+|++.++..+-+++ -..|+......+.+-|...|.++.|.-+|
T Consensus 1148 ~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f--------i~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF--------IAGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred cHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH--------hcCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 9999999998888876666544 4577788888877665443 22355555555666666666666665555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCC-CCchhHHHHHHHHHh
Q 036704 536 NQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENI------------------------LKIDP-TNSAALVLLCNIYAS 590 (634)
Q Consensus 536 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------------------------~~~~p-~~~~~~~~l~~~~~~ 590 (634)
.... .|..+...+...|++..|....+++ ..++- -++.-+..++.-|-.
T Consensus 1218 ~~vS------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1218 SNVS------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred HHhh------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence 4431 2333444444444444444433332 12111 133345566666777
Q ss_pred cCChHHHHHHHHH
Q 036704 591 SGKWEEVARLMGS 603 (634)
Q Consensus 591 ~g~~~~A~~~~~~ 603 (634)
.|-++|-..+++.
T Consensus 1292 rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1292 RGYFEELISLLEA 1304 (1666)
T ss_pred cCcHHHHHHHHHh
Confidence 7777777666653
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=3.8e-09 Score=93.95 Aligned_cols=225 Identities=14% Similarity=0.042 Sum_probs=174.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccC
Q 036704 50 LFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCG 129 (634)
Q Consensus 50 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 129 (634)
+-+.|.+-|-+.+|...|+...++ .|.++||..|-++|.+..++..|+.++.+-++.- |-++.......+.+...+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHH
Confidence 456688889999999998888764 6778889999999999999999999988877652 445555556777788888
Q ss_pred ChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHH
Q 036704 130 SLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAH 206 (634)
Q Consensus 130 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (634)
+.++|.++++...+ -++.+..++...|.-.++++-|+..++++.+-|+ -+...|+.+--+|.-.+.+|.++.-|+.
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 88999988887764 3555666667777788889999999999988886 4666777777777788888888888888
Q ss_pred HHHhcCCCC--hhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHH
Q 036704 207 VIKSEHGSH--LISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAG 284 (634)
Q Consensus 207 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 284 (634)
....--.|+ ..+|-.+-......|++.-|.+.|+-....|. .+...+|.|.-.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-------------------------~h~ealnNLavL 438 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-------------------------QHGEALNNLAVL 438 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-------------------------chHHHHHhHHHH
Confidence 777654443 45677777777778888888888887776665 467778888888
Q ss_pred HHcCCChhHHHHHHHHHhhC
Q 036704 285 VASCSNANEAMSLFSEMGDR 304 (634)
Q Consensus 285 ~~~~g~~~~A~~~~~~m~~~ 304 (634)
-.+.|+.++|..++......
T Consensus 439 ~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhhcCchHHHHHHHHHhhhh
Confidence 88888888888888876543
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=9.1e-07 Score=88.83 Aligned_cols=285 Identities=14% Similarity=0.078 Sum_probs=190.9
Q ss_pred HHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 036704 222 LIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEM 301 (634)
Q Consensus 222 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (634)
....+...|++++|++.++.-...-+ ............+.+.|+.++|..+|..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~-------------------------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~L 64 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQIL-------------------------DKLAVLEKRAELLLKLGRKEEAEKIYREL 64 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCC-------------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556788999999998876433211 23445566788899999999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHhc------CCCChHHHHHHHHHHHHhCCCCChhHHhHHH--hc--CHhHHHHHHHHHHHCCC
Q 036704 302 GDRELIPDGLTVRSLLCACT------SPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL--QH--QAGELFRLFSLMLASQT 371 (634)
Q Consensus 302 ~~~g~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~--~~~~a~~~~~~~~~~~~ 371 (634)
.+. .|+...|-..+..+. ...+.+....+++.+.+.-...+..-.-.+. .+ --..+...+..+...|+
T Consensus 65 i~r--NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 65 IDR--NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred HHH--CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 887 566666554444443 2235677778888776654332222111111 22 23345566777788886
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh----C----------CCCch--hHHHHHHHHHhhcCChHHHHHHHhc
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKT----G----------LALDV--FVMNGLMDMYVKCGSLGSARELFNF 435 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (634)
++ +|+.+-..|....+..-..+++...... + -+|+. .++..+...|-..|++++|++.++.
T Consensus 143 Ps---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 143 PS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred ch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 65 4555555666666666666666665432 1 12333 2445567778889999999999997
Q ss_pred CCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 436 MED--PD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 436 ~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
..+ |. +..|..-...+-+.|++.+|.+.++..+.... -|...-+-.+..+.+.|+.++|.+++....+. +..|..
T Consensus 220 aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~ 297 (517)
T PF12569_consen 220 AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLS 297 (517)
T ss_pred HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCccc
Confidence 764 44 44677778889999999999999999988763 36666667777888999999999998888765 444432
Q ss_pred hHH--------HHHHHHHHhcCChHHHHHHHHhC
Q 036704 513 ERR--------SCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 513 ~~~--------~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
... .....+|.+.|++..|++.|...
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 34558888999988888877655
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.5e-07 Score=89.37 Aligned_cols=217 Identities=16% Similarity=0.077 Sum_probs=158.6
Q ss_pred ccccHHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHH
Q 036704 387 AMASLEMGTQLHCYIMKTG-LAL--DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEA 460 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 460 (634)
..+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777787777432 222 245677788889999999999999998763 3467899999999999999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 461 LKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 461 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
...|++..+. .|+ ..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.+++.
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999986 454 677888888899999999999999999854 454332222233345678899999999765
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 539 -AFDDDIVVWKSLLASCKTHGNVDVGKRAAENIL-------KIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 539 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
...|+...+ .......|+...+ ..++.+. +..|+.+.+|..++.++.+.|++++|...|++..+.+..
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 323332222 2333345655443 2344433 455667789999999999999999999999999987654
Q ss_pred CC
Q 036704 611 KV 612 (634)
Q Consensus 611 ~~ 612 (634)
..
T Consensus 269 ~~ 270 (296)
T PRK11189 269 NF 270 (296)
T ss_pred hH
Confidence 33
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.03 E-value=1.3e-06 Score=89.63 Aligned_cols=163 Identities=11% Similarity=0.016 Sum_probs=111.5
Q ss_pred ccccccchhhHHhhcCChHHHHHHhhcccCCCCccchH--HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 036704 11 LPRWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDF--DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLIS 88 (634)
Q Consensus 11 l~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 88 (634)
+.+.++-|++.|....+.-.|.+.|++.-+-|+..+.. .....|++..+++.|..+.-...+......-...+..+.-
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 44566788888888888889999998877665544331 4566788999999998884443332111111122333444
Q ss_pred HhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccc-hHHH--HHHHHhCCChhHH
Q 036704 89 ACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVS-WTAM--IAGCSQNGQENAA 165 (634)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~a 165 (634)
.+...++...+..-|+...... |.|...|..+..+|.++|++..|.++|.+....++.+ |... .-.-+..|.+.++
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 5667788888888888887765 6677888999999999999999999998776544432 2222 1224567888888
Q ss_pred HHHHHHHHH
Q 036704 166 IELYVQMLQ 174 (634)
Q Consensus 166 ~~~~~~m~~ 174 (634)
++.+.....
T Consensus 650 ld~l~~ii~ 658 (1238)
T KOG1127|consen 650 LDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH
Confidence 888877653
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.99 E-value=4.3e-05 Score=76.10 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=47.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh-cCCCCchhHHHHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLAS-CKTHGNVDVGKRAAENILK-IDPTNSAALVLLC 585 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~ 585 (634)
+-++.+...++|++|++.-..-..+|-..-|-.+..+ +.+.|+..+++.++++--. .+|.+-.+|..+.
T Consensus 1297 aaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ 1367 (1636)
T KOG3616|consen 1297 AAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIF 1367 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHH
Confidence 3567888888999988887777777755555555444 5677888888888876433 5566655555443
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=2.2e-08 Score=96.41 Aligned_cols=219 Identities=13% Similarity=0.073 Sum_probs=176.5
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD---VVSWSSLIVGYAQFGCGEEAL 461 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 461 (634)
+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.++.+.| ....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 45788899999999999988766 88899999999999999999999999887633 445666677788899999999
Q ss_pred HHHHHHHhCCCC-----C---CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036704 462 KLFRRMRSSGVR-----P---NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAED 533 (634)
Q Consensus 462 ~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 533 (634)
..++.-....++ + +...-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++|++
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887554211 0 0000000 12333344556667777777665766888888999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 534 FINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 534 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.|+.+ ..+| |...|+.|...++...+.++|++.|.+++++.|.-..+.+.|+-.|...|.|+||.+.|=+++.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 6677 6779999999999999999999999999999999999999999999999999999998876654
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=4.1e-07 Score=77.55 Aligned_cols=192 Identities=12% Similarity=0.022 Sum_probs=83.2
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCh
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCG 457 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 457 (634)
+.-.|...|+...|..-+++.++..+. +..++..+...|.+.|..+.|.+.|+...+ .+-...|....-+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 334444555555555555555544433 334444444444445555444444444331 2222334444444444444
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 036704 458 EEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFI 535 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (634)
++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|++.... .| .......+.....+.|++..|..++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 444444444443321111 334444444444444444444444444421 22 1223334444444444444444444
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 536 NQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 536 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
+.. ...++...+...++.-...||.+.+-+.=..+....|.
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 444 22234444444444444444444444444444444443
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.1e-06 Score=84.17 Aligned_cols=408 Identities=14% Similarity=0.075 Sum_probs=232.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC-hhHHHHHHHHHHhcCCh
Q 036704 154 AGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH-LISQNALIAMYTKFDRI 232 (634)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 232 (634)
.+.+..|+++.|+.+|.+..... ++|..-|+.-..+++..|++++|.+=-.+-.+ +.|+ +.-|+..-.++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 34567889999999998887754 34777788888888888888888765555444 3444 35677788888888899
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHH-HHHHHHH-hhCCCCCCH
Q 036704 233 LDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEA-MSLFSEM-GDRELIPDG 310 (634)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~ 310 (634)
++|...|.+-.+.++ .|...++.+..++ ..+.+ .+.|..- .-.++.-++
T Consensus 87 ~eA~~ay~~GL~~d~-------------------------~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p 137 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP-------------------------SNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLP 137 (539)
T ss_pred HHHHHHHHHHhhcCC-------------------------chHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcCh
Confidence 999888888777665 4677777777776 11111 1111110 001122222
Q ss_pred hHHHHH--------HHHhcCC-------CChHHHHHHHHHHHHhCCC---CChhHHhHHHhcCHh----HHHHHHHHHHH
Q 036704 311 LTVRSL--------LCACTSP-------LSLYQGMQIHSYIIKKGFY---SNVPVCNAILQHQAG----ELFRLFSLMLA 368 (634)
Q Consensus 311 ~~~~~l--------l~~~~~~-------g~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~----~a~~~~~~~~~ 368 (634)
.|-..+ +...-+. ++....++....+...+.. +.......- ...+. .......++.+
T Consensus 138 ~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~d~~e 216 (539)
T KOG0548|consen 138 LTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILAS-MAEPCKQEHNGFPIIEDNTE 216 (539)
T ss_pred hhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCC-CCCcccccCCCCCccchhHH
Confidence 221111 1111000 0011111111111100000 000000000 00000 00000000000
Q ss_pred -CCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh-----
Q 036704 369 -SQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV----- 442 (634)
Q Consensus 369 -~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----- 442 (634)
.....-..-...+.++..+..+++.+.+-+....... -+..-++....+|...|.+.++...-+...+....
T Consensus 217 e~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 217 ERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 0000011224566777778888999999998888776 36666677777888888877766655554321111
Q ss_pred -----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh-HHH
Q 036704 443 -----SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE-RRS 516 (634)
Q Consensus 443 -----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 516 (634)
.+..+..+|.+.++++.++.+|++.......|+.. .+....+++.+..+... -+.|... -..
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r 362 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEER 362 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHH
Confidence 22234456777788999999998877664444321 12233344444433333 3344321 112
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
.-...+.+.|++..|+..|.++ ...| |...|..-.-+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 2356677788888888888877 3334 6777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCC
Q 036704 595 EEVARLMGSMKERG 608 (634)
Q Consensus 595 ~~A~~~~~~~~~~g 608 (634)
++|++.|++.++.+
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888887776544
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=2.8e-08 Score=92.62 Aligned_cols=217 Identities=17% Similarity=0.091 Sum_probs=126.5
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC-CC---ChhhHHHH-HHHH
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME-DP---DVVSWSSL-IVGY 451 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~~~~~~~l-~~~~ 451 (634)
....+.+++...|..+.+. .++.+.. .|.......+...+...++-+.+..-++... ++ +..++..+ ...+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556666666655432 2332222 5555555555544444344555555554332 22 11222222 2335
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhcCCh
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERR---SCVVDLLARAGRV 528 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~ 528 (634)
...|++++|++++..- .+.......+..+.+.++++.|.+.++.|. .+..|.... .+.+..+.-.+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhH
Confidence 5567777777776532 345566666777777888888888888776 344443322 1223333333467
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 036704 529 HEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW-EEVARLMGSMK 605 (634)
Q Consensus 529 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 605 (634)
++|.-+|+++ ...+++.+++.++.++...|++++|.++++++++.+|.++.++.+++.+....|+. +.+.+++..++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8888888887 44467777777788888888888888888888888888888888887777777776 56667777766
Q ss_pred h
Q 036704 606 E 606 (634)
Q Consensus 606 ~ 606 (634)
+
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 5
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=4.3e-08 Score=91.44 Aligned_cols=201 Identities=11% Similarity=0.082 Sum_probs=141.1
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHH
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLA-LDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVG 450 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 450 (634)
.|.......+...+...++-+.+..-++........ .+..........+...|++++|+++++.. .+.......+..
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi 140 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQI 140 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHH
Confidence 455555555555454434444554444443323322 23333344456678889999999999876 556677778899
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
|.+.++++.|.+.++.|.+.+ +..+...++.++.. .+.+.+|..+|+++.. ...+++.+.+.+..+....|
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhC
Confidence 999999999999999998753 33444445554443 3469999999999876 55678889999999999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCch
Q 036704 527 RVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNV-DVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 579 (634)
++++|.+++++. ...| ++.++-.++.+....|+. +.+.+.+.++....|.++.
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 999999999987 3344 677888888888888888 7788899999999998774
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=2e-07 Score=82.16 Aligned_cols=417 Identities=12% Similarity=0.003 Sum_probs=214.8
Q ss_pred CCcchhhHHHHHHHccCChHHHHHHhccCCCC---CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-H
Q 036704 113 PDAVLHNHILNMYGKCGSLEDARMVFDEMPQR---NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSI-I 188 (634)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l 188 (634)
....-+++.+..+.+..++++|++++..-.+. +....+.|..+|....++..|-..++++-.. .|...-|..- .
T Consensus 8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 33344566666667777777777777655442 3345566666777777777777777777653 4554444321 1
Q ss_pred HHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHH--HHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHH
Q 036704 189 RACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAM--YTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTV 266 (634)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~ 266 (634)
..+.+.+.+..|.++...|... +....-..-+.+ .-..+++.. +..+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g----------------------------~rsL 134 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPG----------------------------SRSL 134 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcc----------------------------hHHH
Confidence 2222334444444444333321 100000000111 112333444 4444
Q ss_pred HhcCC-CCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCCh
Q 036704 267 FNEME-SPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNV 345 (634)
Q Consensus 267 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 345 (634)
.++.+ +.+..+.+.......+.|+++.|.+-|....+-|---....|+..+. ..+.++.+.|.+..++++++|++..+
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 44444 24455555566667789999999999998876543334556776664 44678889999999999888765433
Q ss_pred hHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC
Q 036704 346 PVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGS 425 (634)
Q Consensus 346 ~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (634)
...-. |...| ||... .|+.- .|..++ -...+|.-...+.+.|+
T Consensus 214 ElgIG---------------m~teg--iDvrs----------vgNt~-------~lh~Sa---l~eAfNLKaAIeyq~~n 256 (459)
T KOG4340|consen 214 ELGIG---------------MTTEG--IDVRS----------VGNTL-------VLHQSA---LVEAFNLKAAIEYQLRN 256 (459)
T ss_pred ccCcc---------------ceecc--Cchhc----------ccchH-------HHHHHH---HHHHhhhhhhhhhhccc
Confidence 21111 00111 11100 00000 000000 12234444555667778
Q ss_pred hHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 036704 426 LGSARELFNFMED-----PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYR 500 (634)
Q Consensus 426 ~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 500 (634)
++.|.+.+-.|+. .|++|...+.-.- ..+++.+..+-++-+.+... -...||..++-.||+..-++.|-.++.
T Consensus 257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 257 YEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 8888887777762 5566655443221 23445555555555655532 235677777777888777777777765
Q ss_pred HHHHHhCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCH----HHHHHHHHHHHhcC
Q 036704 501 IMQNEYGIIPTRERRSCVVDLLA-RAGRVHEAEDFINQMAFDDDIVVWKSLLASC-KTHGNV----DVGKRAAENILKID 574 (634)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~----~~a~~~~~~~~~~~ 574 (634)
+-....-.-.+...|+ |++++. ..-..++|.+-++.+........-...+..- .+..+- ..+++-|++.+++.
T Consensus 335 En~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y 413 (459)
T KOG4340|consen 335 ENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY 413 (459)
T ss_pred hCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4332101112344444 333333 3346667766666551111111111111111 111111 22333344444422
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
..+....++.|.+..++..+++.|+.-.+
T Consensus 414 ---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 414 ---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred ---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 12556667788888888888888886654
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=3.1e-06 Score=76.42 Aligned_cols=315 Identities=12% Similarity=0.066 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHH
Q 036704 216 LISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAM 295 (634)
Q Consensus 216 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 295 (634)
+.-...+-..+...|++.+|+.-|....+.|+..|-++.. -...|...|+..-|+
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifr-------------------------RaT~yLAmGksk~al 92 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFR-------------------------RATVYLAMGKSKAAL 92 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHH-------------------------HHHHHhhhcCCccch
Confidence 3344456667778888899988888887777654443322 234566667777777
Q ss_pred HHHHHHhhCCCCCCHhHHHH-HHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCC
Q 036704 296 SLFSEMGDRELIPDGLTVRS-LLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPD 374 (634)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~ 374 (634)
.-+....+. +||-..-.. -...+.+.|.++.|..-|+.+++....... ..++.+-+.... .
T Consensus 93 ~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~----------~~eaqskl~~~~------e 154 (504)
T KOG0624|consen 93 QDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL----------VLEAQSKLALIQ------E 154 (504)
T ss_pred hhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch----------hHHHHHHHHhHH------H
Confidence 767666553 565432211 122355778888888777777765432211 111111111110 1
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHHHHHHHH
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWSSLIVGY 451 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 451 (634)
.......+..+...|+...|+.....+++..+ .+...+..-..+|...|++..|+.-+.... ..+..++.-+-..+
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL 233 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 12334455667788899999999999887653 588888888899999999999987766554 46666777777788
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHH----HHH---------HHHhcccCCHHHHHHHHHHHHHHhCCCCC-----hh
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTL----VGV---------LTACSHVGLVEEGLQLYRIMQNEYGIIPT-----RE 513 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~ 513 (634)
...|+.+.++...++..+. .||.... ..| +......++|.++.+..+...+. .|. ..
T Consensus 234 Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~ 308 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYN 308 (504)
T ss_pred HhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeee
Confidence 8889999999888887765 5553221 111 01112233444444444443322 222 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
.+..+-.++...|++.+|+....+. .+.|| ..++..-..+|.-...++.|+.-|+++.+.+|++..
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 1222333444445555555544444 33342 444444444555555555555555555555554443
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=0.00016 Score=81.28 Aligned_cols=254 Identities=13% Similarity=0.059 Sum_probs=156.9
Q ss_pred CHhHHHHHHHHHHHCCCCCC----HhHHHHHHHHhhccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHhhcCC
Q 036704 355 QAGELFRLFSLMLASQTKPD----HITFNDVMGACAAMASLEMGTQLHCYIMKT----GLA-LDVFVMNGLMDMYVKCGS 425 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 425 (634)
++++|...+++..+.-...+ ....+.+...+...|+++.|...+.+.... |.. ........+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 55555555555443211111 123445556677889999998888887643 111 112344555667788899
Q ss_pred hHHHHHHHhcCCC-------CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHhcccC
Q 036704 426 LGSARELFNFMED-------PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSG--VRPN--HVTLVGVLTACSHVG 490 (634)
Q Consensus 426 ~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~~~~~~~g 490 (634)
+++|...+++..+ ++ ...+..+...+...|++++|...+++..... ..+. ...+..+.......|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 9999888776542 11 1234445566777799999988888765431 1122 334444566777889
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCC
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERR-----SCVVDLLARAGRVHEAEDFINQMAFD--DDI----VVWKSLLASCKTHGN 559 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~g~ 559 (634)
+++.|.+.++..............+ ...+..+...|+.+.|.+++...... ... ..+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 9999998888875431111111111 11224445678899999988776211 111 123456777888899
Q ss_pred HHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 560 VDVGKRAAENILKID------PTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+++|...++++.... +....++..++.++.+.|+.++|...+.+..+..
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999887632 1233467778888999999999999988887643
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.4e-06 Score=78.40 Aligned_cols=101 Identities=15% Similarity=0.008 Sum_probs=70.5
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChH
Q 036704 53 SLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLE 132 (634)
Q Consensus 53 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 132 (634)
+.+..|+++.|+..|...... -++|...|+.-..++.+.|+++.|++--.+-++.. |.=+..|.....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 356778888888888888764 34566678888888888888888877666655543 333567777777777788888
Q ss_pred HHHHHhccCCCC---CccchHHHHHHH
Q 036704 133 DARMVFDEMPQR---NVVSWTAMIAGC 156 (634)
Q Consensus 133 ~A~~~~~~~~~~---~~~~~~~li~~~ 156 (634)
+|+..|.+-.+. |...++-+..++
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 888888776542 333455555544
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=1.4e-05 Score=79.13 Aligned_cols=301 Identities=8% Similarity=-0.039 Sum_probs=158.6
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhCC-CCCCHhHHHH-HHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRE-LIPDGLTVRS-LLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
...|..+...+...|+.+.+.+.+....+.. ..++...... ....+...|+++.|.+.++.+.+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------ 73 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY------------ 73 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------
Confidence 4456666777777787777666665544321 1222211111 1223345566666666655555432
Q ss_pred hcCHhHHHHHHHHHHHCCCCCCHhHHHH---HHHHhhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCChHH
Q 036704 353 QHQAGELFRLFSLMLASQTKPDHITFND---VMGACAAMASLEMGTQLHCYIMKTGLAL-DVFVMNGLMDMYVKCGSLGS 428 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 428 (634)
+.+...+.. ........+..+.+.+.+.. .....| .......+...+...|++++
T Consensus 74 -------------------P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 74 -------------------PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred -------------------CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 222222221 11111223334444444433 111122 22333445566677777777
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHhcccCCHHHHHHHHHHH
Q 036704 429 ARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PNH--VTLVGVLTACSHVGLVEEGLQLYRIM 502 (634)
Q Consensus 429 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~ 502 (634)
|...+++..+ .+...+..+...+...|++++|..++++....... |+. ..|..+...+...|++++|..++++.
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776653 33445666777777778888888877776654321 222 23445666777778888888888776
Q ss_pred HHHhCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 503 QNEYGIIPTRERR-S--CVVDLLARAGRVHEAEDF--I-NQM-AF---DDDIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 503 ~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.......+..... + .++..+...|....+.++ + ... .. ............++...|+.++|...++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5321111111111 1 223333334433333322 1 111 11 11122223566667788889999988888765
Q ss_pred cC-C--------CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 573 ID-P--------TNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 573 ~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.. . .........+.++...|++++|.+.+......+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 1 134455566777889999999999998887543
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=4.6e-07 Score=79.76 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=108.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
+..|...|+++.+....+.+... . ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 34567777777765444333221 1 012235666777777777664 234567788888888889999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 528 VHEAEDFINQM-AFDD-DIVVWKSLLASC-KTHGN--VDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 528 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
+++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999888 5555 667777777764 66676 5899999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 036704 603 SMKERGV 609 (634)
Q Consensus 603 ~~~~~g~ 609 (634)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9887554
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.1e-05 Score=81.11 Aligned_cols=253 Identities=11% Similarity=0.086 Sum_probs=137.7
Q ss_pred CcchhhHHHH--HHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCChh
Q 036704 114 DAVLHNHILN--MYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQS-G--------LMPDQF 182 (634)
Q Consensus 114 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~ 182 (634)
|+.|...+++ .|..-|+.+.|.+-.+.++ +...|..|.+.|.+.++++-|.-.+-.|... | ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4455555554 3566788888877766554 3456888888888888877777666666432 1 1222 1
Q ss_pred hHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccch
Q 036704 183 TFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDF 262 (634)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 262 (634)
+=.-+.......|.+++|+.++.+.++.+ .|-..|-..|++++|.++-+.- |-+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~---DRi-------------- 855 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETK---DRI-------------- 855 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhc---cce--------------
Confidence 11112222346788888888888877643 3455677788888888776531 111
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHH------HHHHhcCCCChHHHHHHHHHH
Q 036704 263 ARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRS------LLCACTSPLSLYQGMQIHSYI 336 (634)
Q Consensus 263 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~------ll~~~~~~g~~~~a~~~~~~~ 336 (634)
.=..||......+-..++.+.|++.|++.... --..+.. -|.-|.+..+-+.....|.+.
T Consensus 856 ----------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY 921 (1416)
T KOG3617|consen 856 ----------HLRNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY 921 (1416)
T ss_pred ----------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH
Confidence 11234555566666667777777777654211 1111111 122222222222222222222
Q ss_pred HHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 036704 337 IKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGL 416 (634)
Q Consensus 337 ~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 416 (634)
++. .+..+.|+..|....+ |-++++..|-.|+.++|.++-++- -|....-.+
T Consensus 922 lES-------------~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhl 973 (1416)
T KOG3617|consen 922 LES-------------VGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHL 973 (1416)
T ss_pred Hhc-------------ccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHH
Confidence 221 1255555555554432 345556666667777666664432 244555556
Q ss_pred HHHHhhcCChHHHHHHHhcCC
Q 036704 417 MDMYVKCGSLGSARELFNFME 437 (634)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~ 437 (634)
...|-..|++.+|..+|.+..
T Consensus 974 aR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHH
Confidence 667777777777777666543
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=3.4e-06 Score=74.60 Aligned_cols=285 Identities=11% Similarity=0.050 Sum_probs=165.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCH
Q 036704 278 WNTIIAGVASCSNANEAMSLFSEMGDRELIP-DGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQA 356 (634)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 356 (634)
+++.+..+.+..+++.|++++..-.++ .| +...++.+..+|....++..|-..++++-...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---------------- 74 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---------------- 74 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------------
Confidence 566677778888999999998876655 44 66677888888888888888888888776542
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHH-HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHH--HHHhhcCChHHHHHHH
Q 036704 357 GELFRLFSLMLASQTKPDHITFND-VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLM--DMYVKCGSLGSARELF 433 (634)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~ 433 (634)
|...-|.. -...+-+.+.+..|.++...|.+. +....-..-+ ......+++..+..++
T Consensus 75 ----------------P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 75 ----------------PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred ----------------hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 22221111 112333444445555555444331 1111100001 1122445666666666
Q ss_pred hcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCC---
Q 036704 434 NFME-DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGII--- 509 (634)
Q Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 509 (634)
++.. +.+..+.+.......+.|+++.|.+-|+...+-+---....|+..+. ..+.|+++.|.++..++..+ |++
T Consensus 136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR-G~r~HP 213 (459)
T KOG4340|consen 136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER-GIRQHP 213 (459)
T ss_pred HhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcCC
Confidence 6665 34444444444455566666666666666555432222344444333 33446666666666666544 433
Q ss_pred ----------CCh---------------hHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCH
Q 036704 510 ----------PTR---------------ERRSCVVDLLARAGRVHEAEDFINQM----AFDDDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 510 ----------~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~ 560 (634)
||+ ..+|.-...+.+.|+++.|.+.+.+| ....|+.|++.+.-.= ..++.
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p 292 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARP 292 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCc
Confidence 111 11222233445778888888888888 2334777777665432 23455
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 561 DVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
-...+-+.-+++.+|-.+.++..+.-+||+..-++-|..++-
T Consensus 293 ~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 293 TEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 556666667777788777788888888888888888777653
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=1.1e-06 Score=81.10 Aligned_cols=181 Identities=12% Similarity=0.022 Sum_probs=117.4
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED--PDV----VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNH--VTLV 480 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~ 480 (634)
....+..+...+...|++++|...|+++.+ |+. ..+..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455566667777778888888888876653 321 35566677777888888888888887765321111 1344
Q ss_pred HHHHHhccc--------CCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 036704 481 GVLTACSHV--------GLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLL 551 (634)
Q Consensus 481 ~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 551 (634)
.+..++... |++++|.+.++.+... .|+. .....+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 444444443 5677777777777653 3332 12211111100 00000 01122566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..+...|++++|+..++++++..|++ +.++..++.++.+.|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999987764 478999999999999999999999988754
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=1.6e-06 Score=92.05 Aligned_cols=199 Identities=15% Similarity=0.189 Sum_probs=138.8
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED--------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLV 480 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 480 (634)
+...|-..|.-....++.+.|.++.++... .-...|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 344566666666777777777777776652 122367777777777777777777777777642 1244566
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD---DIVVWKSLLASCKT 556 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~ 556 (634)
.|...|.+.+..++|.++++.|.++++ .....|..+++.+.+..+-++|.+++.++ ..-| ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 777777777788888888888877655 55666777777777777777777777776 2222 34455555666667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRK 611 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 611 (634)
.||.+++..+|+..+...|.-...|+.+++.-.++|+.+.+..+|+++...++++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 7888888888888888788777778888877778888888888888777776653
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=5e-05 Score=75.06 Aligned_cols=195 Identities=12% Similarity=0.062 Sum_probs=116.7
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C---Ch--hhHHHHHH
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P---DV--VSWSSLIV 449 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~l~~ 449 (634)
....+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+ | +. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 4445556677788888888888888876644 566677778888888888888888887653 1 21 23456777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHhcccCCHHHHHHH--HHHHHHHhCCCCChhHH--HHHHHH
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGV-RPNHVTL-V--GVLTACSHVGLVEEGLQL--YRIMQNEYGIIPTRERR--SCVVDL 521 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~--~~~~~~~~~~~~~~~~~--~~l~~~ 521 (634)
.+...|++++|..++++...... .+..... . .++..+...|....+.+. +...... ........+ .....+
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHH
Confidence 78888999999988888764432 1122111 1 223333334433333222 1111111 111111112 245677
Q ss_pred HHhcCChHHHHHHHHhC---CCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 522 LARAGRVHEAEDFINQM---AFD----D----DIVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~---~~~----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
+...|+.++|.+.++.+ ... . ..........++...|++++|.+.+..++..
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888999999998887 111 1 1122233334467889999999999987753
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=8.1e-05 Score=76.99 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=127.3
Q ss_pred CChHHHHHHHHHhhhcCCCCCC-cccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHH
Q 036704 58 NLYNEALVAFDFLQNNTNFRIR-PSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARM 136 (634)
Q Consensus 58 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 136 (634)
++...|+..|=+..+. .++ ...|..|...|...-+...|.+.|+...+.+ +.+..........|++..+++.|..
T Consensus 472 K~~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 3466666666555543 222 3478888888888888999999999988876 5677788889999999999999998
Q ss_pred HhccCCCCC-----ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhc
Q 036704 137 VFDEMPQRN-----VVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSE 211 (634)
Q Consensus 137 ~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (634)
+.-...+.+ ...|...--.|...++..++..-|+...+.. +-|...|..+..+|.+.|+...|.+.|.......
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 854433321 1123333344667888888888888877653 3566788889999999999999999998877643
Q ss_pred CCCCh-hHHHHHHHHHHhcCChhHHHHHHhccC
Q 036704 212 HGSHL-ISQNALIAMYTKFDRILDAWNVFSSIA 243 (634)
Q Consensus 212 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 243 (634)
|+. ...--.....+..|.+.+|...+..+.
T Consensus 627 --P~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 627 --PLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred --cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 332 222233444667888888888877654
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=5.7e-05 Score=68.47 Aligned_cols=89 Identities=9% Similarity=-0.037 Sum_probs=69.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNH---VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAG 526 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 526 (634)
....+++.++++..+...+....... ..+..+-.++...+++.+|++...++. .+.|+ +.++.--.++|.-..
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhH
Confidence 45667888999998888877433222 334556667778899999999999988 56675 888888899999999
Q ss_pred ChHHHHHHHHhC-CCCC
Q 036704 527 RVHEAEDFINQM-AFDD 542 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~ 542 (634)
+++.|+.-|+.. ...+
T Consensus 356 ~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 999999999988 4444
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=4.6e-07 Score=75.39 Aligned_cols=89 Identities=7% Similarity=-0.097 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChH
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWE 595 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 595 (634)
+...+...|++++|...|+.. ...| +...+..++.++...|++++|+..|+++++.+|.++.++..++.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 344444555555555555544 2222 34455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q 036704 596 EVARLMGSMKE 606 (634)
Q Consensus 596 ~A~~~~~~~~~ 606 (634)
+|...+++..+
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.64 E-value=0.00037 Score=67.44 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=126.5
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCChHHHHHHHh
Q 036704 356 AGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL-DVFVMNGLMDMYVKCGSLGSARELFN 434 (634)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (634)
.+.....+.+++..-..--..+|...|+...+..-+..|..+|.++.+.+..+ ++.++++++.-||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666666666654333334577788888888888888999999988877766 77788888887765 67788888888
Q ss_pred cCCC--CChhhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC--
Q 036704 435 FMED--PDVVSW-SSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG-- 507 (634)
Q Consensus 435 ~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 507 (634)
.-.+ +|...| ...+.-+...++-..+..+|++....++.|+ ...|..++..-..-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6543 444433 4556667777888888889998888866665 46788888888888888888888887776543
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 508 IIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
..+....-..+++.|.-.+.+..-..-++.+
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3333344445666666555544444433333
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.63 E-value=1.8e-06 Score=71.76 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=100.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036704 461 LKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A 539 (634)
Q Consensus 461 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 539 (634)
..++++..+. .|+ .+......+...|++++|...|+.+... -+.+...+..+..++.+.|++++|...|++. .
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455666654 344 3555677788999999999999998842 2336778889999999999999999999998 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 540 FDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 540 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
..| +...+..+..++...|++++|+..++++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 444 78899999999999999999999999999999999999988876654
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.62 E-value=0.0011 Score=68.33 Aligned_cols=543 Identities=13% Similarity=0.060 Sum_probs=277.7
Q ss_pred cCChHHHHHHhhcccCCCCccchHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHH
Q 036704 25 CMLLDQAGEVVDSFLRRFDDIWDFDLFSS--LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKV 102 (634)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (634)
.+++..|.+..+++.++.|..-.+.++.+ +.+.|+.++|..+++..... ...|..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 47788999999999988888766577777 67899999999988887754 223677888888899999999999999
Q ss_pred HHHHHHcCCCCCcchhhHHHHHHHccCChH----HHHHHhccCCCCCccchHHHHHHHHhC-CC---------hhHHHHH
Q 036704 103 HDHILSSKCQPDAVLHNHILNMYGKCGSLE----DARMVFDEMPQRNVVSWTAMIAGCSQN-GQ---------ENAAIEL 168 (634)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~-g~---------~~~a~~~ 168 (634)
|+..... .|+......+..+|.|.+++. .|.+++...++.--..|+. ++...+. .. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHH
Confidence 9998866 466778888888898887765 4667777666544444543 3333322 11 2235556
Q ss_pred HHHHHHCCCCC-ChhhHHHHHHHhhcCCCchhHhHHHHH-HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCC
Q 036704 169 YVQMLQSGLMP-DQFTFGSIIRACSGLCCVGLGRQLHAH-VIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKD 246 (634)
Q Consensus 169 ~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 246 (634)
++.+.+.+-+. +..-...-+..+...|++++|..++.. ..+.-...+...-+.-+..+...+++.+-.++-.++..++
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66665543111 112122222334477888999888843 3333344445555666777888888888777766665544
Q ss_pred cchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH---hcCC
Q 036704 247 ITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCA---CTSP 323 (634)
Q Consensus 247 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~ 323 (634)
..-|...++.+ .++++..-.++... .+...+..+...+...+...... ...|.+-+.+ +-..
T Consensus 257 ~Ddy~~~~~sv------~klLe~~~~~~a~~------~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~ 321 (932)
T KOG2053|consen 257 NDDYKIYTDSV------FKLLELLNKEPAEA------AHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLI 321 (932)
T ss_pred CcchHHHHHHH------HHHHHhcccccchh------hhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhccc
Confidence 32222222210 01111110011110 01111222222222222211100 0111111111 1223
Q ss_pred CChHHHHHHHHHHHHhCCCCChhH-HhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc-cHHHHHHHHHHH
Q 036704 324 LSLYQGMQIHSYIIKKGFYSNVPV-CNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMA-SLEMGTQLHCYI 401 (634)
Q Consensus 324 g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~ 401 (634)
|+.+++.-.+- .+.|..|-... .+..+. ..+......++..+.... +.....+++..-
T Consensus 322 gd~ee~~~~y~--~kfg~kpcc~~Dl~~yl~------------------~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 322 GDSEEMLSYYF--KKFGDKPCCAIDLNHYLG------------------HLNIDQLKSLMSKLVLADDDSSGDEKVLQQH 381 (932)
T ss_pred CChHHHHHHHH--HHhCCCcHhHhhHHHhhc------------------cCCHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 44443332211 11111111000 000000 111111122222222111 111111111110
Q ss_pred H-------HhC--CCCchhHHH----HHHHHHhhcCChHHHHHHHhcCCC----CC----hhhHHHHHHHHHhcCChH--
Q 036704 402 M-------KTG--LALDVFVMN----GLMDMYVKCGSLGSARELFNFMED----PD----VVSWSSLIVGYAQFGCGE-- 458 (634)
Q Consensus 402 ~-------~~~--~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~-- 458 (634)
. -.| ...+..... .++..|++. ..+=..+.. +. ..+-+.|+..+.+.++..
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g------ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l 455 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG------LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDL 455 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc------ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 0 001 111111111 111112111 000000100 11 114567788888888766
Q ss_pred -HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 459 -EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 459 -~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
+|+-+++.-.... +-|..+-..+|+.|+-.|-...|.++|+.+.-+ .+..|..-+. +...+...|++.-+...+..
T Consensus 456 ~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 456 FEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHH
Confidence 3444555544442 335666778889999999999999999988766 6776655443 34556677888888888876
Q ss_pred C-CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 538 M-AFD-D-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDP----TNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 538 ~-~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
. .+- . -..+-..+..+| +.|.+.+..++..--..+.- .-..+-+.+...++..++.++-...++.|. ++
T Consensus 533 ~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~---l~ 608 (932)
T KOG2053|consen 533 HLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK---LP 608 (932)
T ss_pred HHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc---cC
Confidence 6 111 1 112333344444 66777766655432222211 122334455666777788877777776665 33
Q ss_pred C-CCCccEEEe
Q 036704 611 K-VPGQSWIEI 620 (634)
Q Consensus 611 ~-~~~~~~~~~ 620 (634)
+ +..+.|..+
T Consensus 609 ~~e~~I~w~~L 619 (932)
T KOG2053|consen 609 PSEDRIQWVSL 619 (932)
T ss_pred cchhhcccccc
Confidence 2 223466554
No 112
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=1.8e-05 Score=74.97 Aligned_cols=219 Identities=11% Similarity=0.064 Sum_probs=156.6
Q ss_pred HHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-ChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCh-
Q 036704 383 GACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG-SLGSARELFNFMED---PDVVSWSSLIVGYAQFGCG- 457 (634)
Q Consensus 383 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~- 457 (634)
..+...+..++|.....++++..+. +..+|+.-..++...| ++++++..++.+.+ .+...|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 3444566788888888888877654 4445555555666666 57899999888764 3444666555555556653
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CCh----H
Q 036704 458 -EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA---GRV----H 529 (634)
Q Consensus 458 -~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~ 529 (634)
++++.+++++.+... -|..+|..-..++...|+++++++.++++.+. . .-+...|+.....+.+. |.. +
T Consensus 124 ~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHH
Confidence 678888989888752 36788888888888889999999999999864 2 33455565555444443 222 4
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----------
Q 036704 530 EAEDFINQM-AFDD-DIVVWKSLLASCKTH----GNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG----------- 592 (634)
Q Consensus 530 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------- 592 (634)
+++++..++ ...| +...|+.+...+... +...+|.+.+.++....|.++.++..|+.+|++..
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 677777555 5555 677888888888773 45577999999999999999999999999998743
Q ss_pred -------ChHHHHHHHHHHH
Q 036704 593 -------KWEEVARLMGSMK 605 (634)
Q Consensus 593 -------~~~~A~~~~~~~~ 605 (634)
..++|.++++.+.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccccHHHHHHHHHHHH
Confidence 3467888888874
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=1.3e-06 Score=86.90 Aligned_cols=222 Identities=10% Similarity=-0.006 Sum_probs=167.5
Q ss_pred CCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhhHHHHH
Q 036704 371 TKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVSWSSLI 448 (634)
Q Consensus 371 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~ 448 (634)
.+|-...-..+...+...|-...|..++++. ..+.-++.+|+..|+..+|..+..+.. +|++..|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 3455555566667777888888888888754 456677888888888888888776554 47777888887
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+.-+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhh
Confidence 7777766777787777654332 11122222334688899988888776432 22456677777888889999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 529 HEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 529 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.|.+.|... ...| +...|+.+..+|.+.|+-.+|...++++++-+-.+..+|.+......+.|.+++|.+.++++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999887 5556 5679999999999999999999999999998888889999988888999999999999998886
Q ss_pred CCCc
Q 036704 607 RGVR 610 (634)
Q Consensus 607 ~g~~ 610 (634)
....
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 5544
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=4.9e-06 Score=72.80 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR 524 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (634)
..+-..+...|+-+....+........ .-+.......+....+.|++..|...+++... .-++|...++.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 556677778888888888877755432 23455566678888899999999999999885 567788899999999999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.|+.++|..-|.+. ...| ++...+.+...+.-.|+.+.|..++.......+.++.+-..++.+...+|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999988887 4444 577888888889999999999999999988888899999999999999999999988854
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=1.5e-05 Score=69.92 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=115.3
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 036704 414 NGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG 490 (634)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 490 (634)
..+-..+...|+-+....+...... .+......++....+.|++..|...+++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 5556667777777777777776542 334455557888888889999999888888764 667888888888888999
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA-FDD-DIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
+.+.|..-|.+..+-. .-+....+.+.-.|.-.|+++.|..++.... ..+ |..+-..+..+....|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999988888887532 2245566777778888889999988888872 222 67788888888888888888888765
Q ss_pred H
Q 036704 569 N 569 (634)
Q Consensus 569 ~ 569 (634)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.3e-07 Score=55.48 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=24.8
Q ss_pred cCCCChhHHHHHHHHHHhcCChhHHHHHHhccC
Q 036704 211 EHGSHLISQNALIAMYTKFDRILDAWNVFSSIA 243 (634)
Q Consensus 211 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 243 (634)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=3.3e-05 Score=67.10 Aligned_cols=194 Identities=17% Similarity=0.237 Sum_probs=141.5
Q ss_pred cccHHHHHHHHHHHH---HhC-CCCchh-HHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHH-HHHHHhcCChHH
Q 036704 388 MASLEMGTQLHCYIM---KTG-LALDVF-VMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSL-IVGYAQFGCGEE 459 (634)
Q Consensus 388 ~~~~~~a~~~~~~~~---~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~ 459 (634)
..+.++..+++.++. +.| ..++.. .|..++-+....|+.+.|...++.+.+ |.+.-...| ..-+-..|.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 345666777777666 233 444443 355666677788899999988888764 333222222 122445788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 460 ALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 460 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
|+++++.+.+.+ +.|..++-.=+...-..|+..+|++-+....+ .+..|...|.-+.+.|...|+++.|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999886 44567776666666677888899998888886 57789999999999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 539 AFDD-DIVVWKSLLASCKTHG---NVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 539 ~~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
-..| ++..+..+...+.-.| +...|.+.|.+++++.|.+...+.-+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 5556 5666677777754433 67889999999999999777666544
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.00028 Score=79.43 Aligned_cols=299 Identities=10% Similarity=0.019 Sum_probs=142.2
Q ss_pred HhhcCCCchhHhHHHHHHHHhcCC------CC--hhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccc
Q 036704 190 ACSGLCCVGLGRQLHAHVIKSEHG------SH--LISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLD 261 (634)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 261 (634)
.+...|+++++...+......--. +. ......+...+...|++++|...+++..+..
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------- 482 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL--------------- 482 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---------------
Confidence 334566777777766665443111 11 1122223334556677777777666543210
Q ss_pred hHHHHHhcCCCCC----hhhHHHHHHHHHcCCChhHHHHHHHHHhhCCC---CC--CHhHHHHHHHHhcCCCChHHHHHH
Q 036704 262 FARTVFNEMESPN----LASWNTIIAGVASCSNANEAMSLFSEMGDREL---IP--DGLTVRSLLCACTSPLSLYQGMQI 332 (634)
Q Consensus 262 ~a~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~g~~~~a~~~ 332 (634)
+..+ ....+.+...+...|++++|...+.+.....- .+ ...++..+...+...|+++.|...
T Consensus 483 ---------~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 483 ---------PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111 12345566677788999999888887754211 11 122344455566778888888887
Q ss_pred HHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCC--C-CHhHHHHHHHHhhccccHHHHHHHHHHHHHhC--CC
Q 036704 333 HSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTK--P-DHITFNDVMGACAAMASLEMGTQLHCYIMKTG--LA 407 (634)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~ 407 (634)
+....... +. .+.. + ....+..+...+...|++++|...+.+..... ..
T Consensus 554 ~~~al~~~-----------------------~~---~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 554 QEKAFQLI-----------------------EE---QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHH-----------------------HH---hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 76654421 00 1100 1 11223333444555566666666666654321 11
Q ss_pred C--chhHHHHHHHHHhhcCChHHHHHHHhcCCC----CC-hhhH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 036704 408 L--DVFVMNGLMDMYVKCGSLGSARELFNFMED----PD-VVSW-----SSLIVGYAQFGCGEEALKLFRRMRSSGVRPN 475 (634)
Q Consensus 408 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 475 (634)
+ ....+..+...+...|+.+.|.+.++.... .. ...+ ...+..+...|+.+.|..++...........
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc
Confidence 1 122233344455566666666665554421 10 0001 0011223345566666666555433211111
Q ss_pred H---HHHHHHHHHhcccCCHHHHHHHHHHHHHH---hCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 476 H---VTLVGVLTACSHVGLVEEGLQLYRIMQNE---YGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 476 ~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
. ..+..+..++...|++++|...+++.... .|..++ ..+...+..++.+.|+.++|.+.+.+.
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 11233444555566666666666655432 121111 223344455555666666666665554
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=2.4e-05 Score=82.03 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLA 552 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 552 (634)
...+..|.....+.|.+++|..+++.+. .+.|+ ......++..+.+.+++++|+..+++. ...| +......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4444445555555555555555555544 22333 223334444555555555555555544 3333 2334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
++...|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555455555555555555555555555555555443
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=7e-06 Score=81.79 Aligned_cols=189 Identities=15% Similarity=0.181 Sum_probs=159.7
Q ss_pred CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036704 405 GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLT 484 (634)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 484 (634)
+.+|-...-..+...+.+.|-...|..+++++ ..|...+.+|+..|+..+|..+..+..++ +|++..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 44555566677888999999999999999985 46777888999999999999999888874 789999999999
Q ss_pred HhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036704 485 ACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDV 562 (634)
Q Consensus 485 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 562 (634)
......-+++|.++.+....+ .-..+.....+.++++++.+.++.- ...| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876542 1112223334579999999999876 5555 57789999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 563 GKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 563 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
|.+.|.......|++..+|+++..+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999877
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=2.2e-05 Score=69.21 Aligned_cols=154 Identities=13% Similarity=0.157 Sum_probs=117.0
Q ss_pred HHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 036704 417 MDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGL 496 (634)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 496 (634)
+..|...|+++.+....+.+..|.. .+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567778887776555443332210 1223566788888888887764 446888999999999999999999
Q ss_pred HHHHHHHHHhCCCC-ChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036704 497 QLYRIMQNEYGIIP-TRERRSCVVDLL-ARAGR--VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENI 570 (634)
Q Consensus 497 ~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 570 (634)
..|++..+ +.| +...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999885 344 677777788764 67777 59999999998 5555 6788899999999999999999999999
Q ss_pred HhcCCCCchhHH
Q 036704 571 LKIDPTNSAALV 582 (634)
Q Consensus 571 ~~~~p~~~~~~~ 582 (634)
++..|.+..-..
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 998887665443
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=6.7e-05 Score=80.29 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=180.7
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHhhcCChHHHHHHHhcCCC-CC-hhhHHH
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKT-GLAL---DVFVMNGLMDMYVKCGSLGSARELFNFMED-PD-VVSWSS 446 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ 446 (634)
-+...|-..|.-....++.++|..+.+++... +++- -...|.++++.-..-|.-+...++|+++.+ .| ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 34457888888899999999999999998842 3322 234677888877778888999999999876 44 346889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
|...|.+.+..++|.++++.|.++ +.-....|...+..+.+.++-+.|..++.++.+...-..........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 999999999999999999999987 3456788999999999999999999999999864222224566677778888999
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCch-hHHHHHHHHHhcCChHHHHHHH
Q 036704 527 RVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKI--DPTNSA-ALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 527 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~-~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
+.+++..+|+.. ..+.-...|+..+..-.++|+.+.+..+|++++.+ .|.... +|.-+...-.+.|+-+.++.+-
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 999999999988 33346789999999999999999999999999984 454444 4444444334457766555554
Q ss_pred HHHH
Q 036704 602 GSMK 605 (634)
Q Consensus 602 ~~~~ 605 (634)
.++.
T Consensus 1695 arA~ 1698 (1710)
T KOG1070|consen 1695 ARAK 1698 (1710)
T ss_pred HHHH
Confidence 4443
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.8e-07 Score=54.13 Aligned_cols=32 Identities=44% Similarity=0.600 Sum_probs=18.6
Q ss_pred CCCCchhHHHHHHHHHhhcCChHHHHHHHhcC
Q 036704 405 GLALDVFVMNGLMDMYVKCGSLGSARELFNFM 436 (634)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (634)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00012 Score=70.05 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=82.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGR 527 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 527 (634)
.+...|+.+.|...++.+... .|+ +.........+...++.++|.+.++++.. ..|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCC
Confidence 344556666777776666655 444 33333444566666777777777666663 3444 3344456666667777
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 528 VHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 528 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+.+|+.++++. ..+.|+..|..|.++|...|+..++... .+..|.-.|++++|...+....
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHH
Confidence 77777766666 3333566677777777776666665554 3344555666666666666666
Q ss_pred hCC
Q 036704 606 ERG 608 (634)
Q Consensus 606 ~~g 608 (634)
++.
T Consensus 453 ~~~ 455 (484)
T COG4783 453 QQV 455 (484)
T ss_pred Hhc
Confidence 544
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1.7e-05 Score=73.13 Aligned_cols=184 Identities=11% Similarity=0.009 Sum_probs=130.3
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChh----h
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL--DVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVV----S 443 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 443 (634)
......+-.+...+...|+++.|...++++.+..... ....+..+..++...|++++|...++.+.+ |+.. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4456678888889999999999999999998765431 124667788899999999999999999863 3322 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhH
Q 036704 444 WSSLIVGYAQF--------GCGEEALKLFRRMRSSGVRPNH-VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRER 514 (634)
Q Consensus 444 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 514 (634)
+..+..++... |+.++|.+.++++.+. .|+. .....+.... . ...... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---------~~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---------LRNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---------HHHHHH---------HH
Confidence 55555666554 7789999999999876 4543 2222221110 0 000010 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM----AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
...+...|.+.|++++|...+++. +..| ....+..++.++...|++++|...++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 124667788999999999999987 2223 3568889999999999999999998888776653
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.2e-05 Score=78.14 Aligned_cols=221 Identities=11% Similarity=0.059 Sum_probs=157.2
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C----------Ch
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P----------DV 441 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----------~~ 441 (634)
+...|..|.......++-..|+..+.+..+..+. +......|.-.|...|.-.+|.+.++.-.. | +.
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE 396 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence 3446666666666677777777777777776654 667777777788888888888887765321 0 00
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRR-MRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVV 519 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 519 (634)
.+-.. ..+..........++|-+ ....+..+|+.....|--.|--.|++++|...|+.+.. ++| |..+||.|.
T Consensus 397 ~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 397 DFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLG 471 (579)
T ss_pred cccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhh
Confidence 00000 111112223344455444 44555446777777777778889999999999999984 566 678999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----C-----chhHHHHHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT-----N-----SAALVLLCNI 587 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~-----~~~~~~l~~~ 587 (634)
..++...+.++|++.|.+. ..+|. +.++..|.-.|...|.+++|...|-.++.+.+. . ..+|..|-.+
T Consensus 472 AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~a 551 (579)
T KOG1125|consen 472 ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLA 551 (579)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHH
Confidence 9999999999999999998 78885 568888999999999999999999998875544 1 2477777777
Q ss_pred HHhcCChHHHHHH
Q 036704 588 YASSGKWEEVARL 600 (634)
Q Consensus 588 ~~~~g~~~~A~~~ 600 (634)
+.-.++.+-+.+.
T Consensus 552 ls~~~~~D~l~~a 564 (579)
T KOG1125|consen 552 LSAMNRSDLLQEA 564 (579)
T ss_pred HHHcCCchHHHHh
Confidence 7777776655443
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=3e-06 Score=69.02 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
...-.+...+...|++++|.++|+-+ ...| +..-|..|..++...|++++|+..|.++..++|+++.++..++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33445666777899999999999988 4555 677899999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 036704 591 SGKWEEVARLMGSMKERG 608 (634)
Q Consensus 591 ~g~~~~A~~~~~~~~~~g 608 (634)
.|+.+.|.+.|+......
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999887643
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=5.1e-06 Score=68.87 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
.....+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++++..|+++..+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34445566666777777777777766 3233 556666777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhC
Q 036704 591 SGKWEEVARLMGSMKER 607 (634)
Q Consensus 591 ~g~~~~A~~~~~~~~~~ 607 (634)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766654
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=4.1e-05 Score=73.14 Aligned_cols=177 Identities=16% Similarity=0.101 Sum_probs=130.4
Q ss_pred ChHHHHHHHhcCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHH
Q 036704 425 SLGSARELFNFMED------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQL 498 (634)
Q Consensus 425 ~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 498 (634)
++.++....+.++. |+...+...+.+.........+..++.+-.+. .-...-|..- -.+...|+++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHH
Confidence 45555655566652 55555666665544443333333333322221 1122333333 345577999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
++.+.+. .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|+..+|+..+++....+|+
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9999863 4446667778889999999999999999998 66676 677888999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 577 NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++..|..|+.+|..+|+..+|....-+...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999988776654
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=5e-05 Score=66.01 Aligned_cols=163 Identities=17% Similarity=0.200 Sum_probs=132.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNH-VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
.|..++-+....|+.+.|...++.+.+.- |.+ ..-..-..-+...|++++|.++++.+..+ -+.|..++..-+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 45666777788899999999999998873 543 22222233355679999999999999974 34467777777777
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC---ChHH
Q 036704 522 LARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG---KWEE 596 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 596 (634)
.-..|+.-+|++-+... .+..|...|..+...|...|++++|.-.+++++-..|.++..+..++..+.-+| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888888999888887 677799999999999999999999999999999999999999999999977665 6778
Q ss_pred HHHHHHHHHhCCC
Q 036704 597 VARLMGSMKERGV 609 (634)
Q Consensus 597 A~~~~~~~~~~g~ 609 (634)
|.+++.+..+-+.
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8999998877543
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00022 Score=62.65 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=109.5
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 036704 397 LHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNH 476 (634)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 476 (634)
+.+.+.......+......-...|++.|++++|++..+....-+.... =+..+.+..+.+.|.+.+++|.+-. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 344444444443333333445567788888888888877433333222 2344556667788888888887642 56
Q ss_pred HHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 036704 477 VTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSL 550 (634)
Q Consensus 477 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l 550 (634)
.|.+-|..++.+ .+....|.-+|+++.. ...|+..+.+-...++...|++++|..+++.. ....++.++-.+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 666666665543 3457777778887774 46677777777777777777777777777776 434466666666
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhcCCCCc
Q 036704 551 LASCKTHGNV-DVGKRAAENILKIDPTNS 578 (634)
Q Consensus 551 ~~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 578 (634)
+..-...|.. +...+.+.......|.++
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 6666666644 444556666666677655
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=4.1e-05 Score=81.07 Aligned_cols=196 Identities=12% Similarity=0.122 Sum_probs=144.6
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCC---------
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPD--------- 440 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--------- 440 (634)
.+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .+. ..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 34567888899999999999999999977765543 334444444467777777766655 222 112
Q ss_pred ----------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 441 ----------VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 441 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
...+..+..+|-+.|+.+++..+|+++.+.. +-|+...+.+...|... ++++|.+++.++...
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 2456678888889999999999999999986 44688899999999988 999999998888753
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---------------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD---------------------DIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---------------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
+...+++.++.++|+++ ...| -..++..+-..|...+++++++.+++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 33444555555555555 2122 23344445567778889999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHH
Q 036704 569 NILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 569 ~~~~~~p~~~~~~~~l~~~~~ 589 (634)
.+++.+|.|..+...++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999998876
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00013 Score=64.08 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=118.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH----H
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL----A 523 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 523 (634)
...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.. +. +..+.+.|..++ .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhc
Confidence 445888999999999887621 223333334456677889999999999984 33 344555555554 4
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH-HHH
Q 036704 524 RAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV-ARL 600 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~ 600 (634)
-.+.+.+|.-+|+++ +..|++.+.+..+.++...|++++|..+++.++..+++++.++.+++.+-...|+-.++ .+.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 466799999999999 47889999999999999999999999999999999999999999998887888876655 445
Q ss_pred HHHHHhCCCcCCCCccEE
Q 036704 601 MGSMKERGVRKVPGQSWI 618 (634)
Q Consensus 601 ~~~~~~~g~~~~~~~~~~ 618 (634)
+..++. ..|...|+
T Consensus 265 l~QLk~----~~p~h~~v 278 (299)
T KOG3081|consen 265 LSQLKL----SHPEHPFV 278 (299)
T ss_pred HHHHHh----cCCcchHH
Confidence 555543 34454554
No 134
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=0.00011 Score=69.77 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=137.3
Q ss_pred HhhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC--HH
Q 036704 420 YVKCGSLGSARELFNFMED--P-DVVSWSSLIVGYAQFG-CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL--VE 493 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~ 493 (634)
+...++.++|+.+.+.+.+ | +...|+.....+...| ++++++..++++.+...+ +..+|+.-...+.+.|. .+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 4445678888888887764 3 3345665556666666 579999999999987532 45566655444555555 36
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCH----HHHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH---GNV----DVGK 564 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~----~~a~ 564 (634)
++..+++++.+. -+-+...|+....++.+.|+++++++.++++ ...| +...|+....++.+. |.. ++.+
T Consensus 126 ~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 778888888853 3346788888888888999999999999998 4444 677888777776554 223 5788
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhc----CChHHHHHHHHHHHhCCC
Q 036704 565 RAAENILKIDPTNSAALVLLCNIYASS----GKWEEVARLMGSMKERGV 609 (634)
Q Consensus 565 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~ 609 (634)
....+++..+|++.++|+.+..++... ++..+|.+...+..+.++
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 888899999999999999999999883 456778888888766443
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=1.9e-05 Score=76.38 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=94.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKT 556 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 556 (634)
...++..+...++++.|..+++++.+. .|+. ...++..+...++-.+|.+++.+. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445556666677788888888887754 3443 334667777777777888887776 3333 66677777788889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.++++.|+.+.+++.+..|.+-.+|..|+.+|.+.|++++|+-.+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999998887664
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.24 E-value=4e-05 Score=63.47 Aligned_cols=116 Identities=12% Similarity=0.044 Sum_probs=91.2
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036704 463 LFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF 540 (634)
Q Consensus 463 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 540 (634)
.+++.... .| +......+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555554 34 3455666777788899999999999998753 2446777888889999999999999999887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 541 DD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 541 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
.| +...+..+...+...|++++|...++++++..|++.....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 44 5778888889999999999999999999999998776443
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.23 E-value=8.8e-05 Score=77.85 Aligned_cols=139 Identities=9% Similarity=0.025 Sum_probs=110.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHH
Q 036704 440 DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSC 517 (634)
Q Consensus 440 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 517 (634)
+...+..|.....+.|..++|..+++...+. .|+ ......++..+.+.+++++|...+++... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 4667888888889999999999999999886 565 56667778888899999999999998884 344 4566677
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
+..++.+.|++++|.++|+++ ...| +..++..+..++...|+.++|...|+++++..-+-...|..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 888889999999999999998 3344 47788888999999999999999999998855444444433
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=5.1e-05 Score=63.47 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=74.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI----VVWKSLLA 552 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~ 552 (634)
|..++..+ ..++...+...++.+.+.++-.+ .....-.+...+...|++++|.+.|+.. ...|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444444 35666667666777765422221 1122233556666777777777777776 222332 24445666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
.+...|++++|+..++.. ...+-.+..+...+.+|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777888777777553 233335566777788888888888888777654
No 139
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.16 E-value=3.1e-06 Score=63.03 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=58.2
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD---DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.|++++|+.+++++ ...| +...+..++.+|.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777888887777 2222 455666678888888888888888888 777777777777778888888999998888
Q ss_pred HHH
Q 036704 601 MGS 603 (634)
Q Consensus 601 ~~~ 603 (634)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 140
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.14 E-value=0.0085 Score=57.19 Aligned_cols=325 Identities=13% Similarity=0.120 Sum_probs=190.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCC----CCHhHHHHHHHHhcCC--------CC-------hHHHHHHHH
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELI----PDGLTVRSLLCACTSP--------LS-------LYQGMQIHS 334 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~--------g~-------~~~a~~~~~ 334 (634)
|...-+..+..+...|++.++..++++|...=++ .+..+|+.++-.+.++ .. ++.+.-..+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 4444566788899999999999999988765433 6778888754444331 11 122222222
Q ss_pred HHHH------hCCCCChhHHhHHHhc-------CHhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccccHHHHHHHHHH
Q 036704 335 YIIK------KGFYSNVPVCNAILQH-------QAGELFRLFSLMLASQTKPDHI-TFNDVMGACAAMASLEMGTQLHCY 400 (634)
Q Consensus 335 ~~~~------~~~~~~~~~~~~ll~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 400 (634)
++.. ..+.|.......++++ ...--..+++.-...-+.|+.. ....+...+.. +.+++..+-+.
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ 284 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEA 284 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHH
Confidence 2222 1344555555555533 2233344444445555667643 34444444444 56666666555
Q ss_pred HHHhCCCC----chhHHHHHHHHHhhcCChHHHHHHHhcCC--CCChhh-------HHHHHHHHH----hcCChHHHHHH
Q 036704 401 IMKTGLAL----DVFVMNGLMDMYVKCGSLGSARELFNFME--DPDVVS-------WSSLIVGYA----QFGCGEEALKL 463 (634)
Q Consensus 401 ~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~----~~~~~~~a~~~ 463 (634)
+....+.+ -..++..++....+.++...|.+.+.-+. +|+... -..+.+..+ ..-+..+=+.+
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55433221 23456777777888899888888887655 344331 112222233 11223344566
Q ss_pred HHHHHhCCCCCCHHHHHHH---HHHhcccCC-HHHHHHHHHHHHHHhCCCC-ChhHHHHHH----HHHHh---cCChH--
Q 036704 464 FRRMRSSGVRPNHVTLVGV---LTACSHVGL-VEEGLQLYRIMQNEYGIIP-TRERRSCVV----DLLAR---AGRVH-- 529 (634)
Q Consensus 464 ~~~m~~~~~~p~~~~~~~l---~~~~~~~g~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~---~g~~~-- 529 (634)
|+.....++.- ......+ +.-+.+.|. -++|..+++.+.+ +.+ |...-|.+. ..|.. ...+.
T Consensus 365 we~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rL 440 (549)
T PF07079_consen 365 WEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRL 440 (549)
T ss_pred HHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 66666654321 2222222 344556665 8889999998874 344 444333322 12211 11122
Q ss_pred -HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 530 -EAEDFINQMAFDD----DIVVWKSLLAS--CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 530 -~A~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.-..++++.++.| +...-+.+..+ +..+|++.++...-.-+.+..| ++.+|..++-.+....+++||.++++
T Consensus 441 lkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 441 LKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2233444556666 34466667666 5678999999999999999999 99999999999999999999999998
Q ss_pred HHH
Q 036704 603 SMK 605 (634)
Q Consensus 603 ~~~ 605 (634)
.+.
T Consensus 520 ~LP 522 (549)
T PF07079_consen 520 KLP 522 (549)
T ss_pred hCC
Confidence 763
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.11 E-value=0.00092 Score=71.16 Aligned_cols=236 Identities=11% Similarity=0.060 Sum_probs=126.0
Q ss_pred cccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhC
Q 036704 80 PSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQN 159 (634)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 159 (634)
...+..|+..+...+++++|.++.+...+.. |-....|-.+...+...++.+.+..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 3456666666667777777777776555542 22333333333345555554444433 233334444
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 036704 160 GQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVF 239 (634)
Q Consensus 160 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 239 (634)
.++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|+.. ++++|..++
T Consensus 97 ~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 44544444444555432 233455666666667777777777777777666 44566777777777777 777777776
Q ss_pred hccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhH-HHHHHH
Q 036704 240 SSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLT-VRSLLC 318 (634)
Q Consensus 240 ~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~ 318 (634)
.+. +..+...+++.++.++|.++... .|+... +..++.
T Consensus 173 ~KA---------------------------------------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ 211 (906)
T PRK14720 173 KKA---------------------------------------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER 211 (906)
T ss_pred HHH---------------------------------------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH
Confidence 542 33456666777777777777664 232221 111111
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 036704 319 ACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH-QAGELFRLFSLMLASQTKPDHITFNDVMGACA 386 (634)
Q Consensus 319 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 386 (634)
.....-....+..++ ..+|+..-.. ++++++.+++.+.+.. +-|.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~-----------~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLL-----------EDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHH-----------HHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111110011111110 1112222222 7888888888888765 334555666666555
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5e-06 Score=49.82 Aligned_cols=35 Identities=34% Similarity=0.724 Sum_probs=31.4
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 036704 147 VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQ 181 (634)
Q Consensus 147 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 181 (634)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.10 E-value=1.1e-05 Score=57.47 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG-KWEEVARLMGSMKE 606 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 606 (634)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999998876
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=4.1e-05 Score=58.80 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++....|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888999999988887 4344 44677788888888999999999999999999998889999999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 036704 593 KWEEVARLMGSMKER 607 (634)
Q Consensus 593 ~~~~A~~~~~~~~~~ 607 (634)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999887653
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00021 Score=59.71 Aligned_cols=127 Identities=14% Similarity=0.080 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh--hHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR--ERRSCV 518 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 518 (634)
.|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 345555555 37788888888888887632211 233444567778889999999999988865 322221 233456
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 519 VDLLARAGRVHEAEDFINQMA-FDDDIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
...+...|++++|+..++... ....+..+...+..|...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788888999999999988763 23356677778888999999999999988753
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.1e-06 Score=49.42 Aligned_cols=35 Identities=37% Similarity=0.658 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG 310 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 310 (634)
.+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=8e-05 Score=60.03 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCNI 587 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 587 (634)
-.++..+.+.|++++|.+.++.+ ...|+ ...+..++.++...|+++.|...++.+....|.+ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444555555555555555555 11221 2344445555666666666666666666655543 3455556666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 036704 588 YASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~ 607 (634)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 66666666666666666554
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=8e-06 Score=48.48 Aligned_cols=33 Identities=27% Similarity=0.716 Sum_probs=28.4
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 036704 147 VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMP 179 (634)
Q Consensus 147 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 179 (634)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=9.1e-06 Score=48.23 Aligned_cols=33 Identities=24% Similarity=0.578 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCC
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIP 308 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 308 (634)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999887
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.01 E-value=1.9e-05 Score=55.41 Aligned_cols=58 Identities=29% Similarity=0.341 Sum_probs=51.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++..+...|++++|+..|+++++..|.++.++..++.++.++|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999999999999999999999999999988764
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.98 E-value=0.00017 Score=58.15 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSL 550 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l 550 (634)
.++..+...+...|++++|.+.++.+....+-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455566667777888888888877775421111 1334556777788888888888888876 22232 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 551 LASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 551 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
..++...|+.++|...++++++..|+++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 888888899999999999999888887765443
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=2.7e-05 Score=69.74 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 459 EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
+....-++++..| .-+.+.+++.+|+..|.+++ .+.| |...|..=..+|.+.|.++.|++-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445555566554 34678899999999999998 4565 677788888999999999999998887
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChH
Q 036704 538 M-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWE 595 (634)
Q Consensus 538 ~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 595 (634)
. .+.|. ..+|..|..+|...|++++|++.|+++++++|++......|-.+--+.+...
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 7 77774 6699999999999999999999999999999999988888876655555444
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.0003 Score=68.18 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 036704 411 FVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG 490 (634)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 490 (634)
.....++..+...++++.|..+++++.+.++.....++..+...++-.+|.+++++..... +-+...+..-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445566667777888888888888887666667778888888888888888888888652 235666666677788889
Q ss_pred CHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036704 491 LVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQMAF 540 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (634)
+++.|.++.+++.. ..| +..+|..|..+|...|++++|+-.++.++.
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999988884 455 566888899999999999999988888843
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=8e-05 Score=66.76 Aligned_cols=100 Identities=18% Similarity=0.090 Sum_probs=81.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAG 526 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 526 (634)
.+-+.+.+++.+|+..|.+.++.. +-|++.|..=..+|.+.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 345778899999999999999873 2357778888899999999999998888777 45664 568999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036704 527 RVHEAEDFINQM-AFDDDIVVWKSLL 551 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~~~~~~~~l~ 551 (634)
++++|++.|++. .+.|+..+|..=+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999999988 8888766554433
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00013 Score=71.09 Aligned_cols=108 Identities=14% Similarity=0.012 Sum_probs=89.7
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGN 559 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 559 (634)
-...+...|++++|+..|+++... .+.+...+..+..+|.+.|++++|+..++++ ...| +...+..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345666789999999999999863 2335677888889999999999999999998 5555 67788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 560 VDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
+++|+..++++++++|.++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998887776554433
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00017 Score=62.38 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
...+..+...+...|++++|...+++. ...|+ ...+..++..+...|++++|+..++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344556667777778888888877776 22222 3577888888889999999999999999999998888888888
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHhCC
Q 036704 587 IYASSGK--------------WEEVARLMGSMKERG 608 (634)
Q Consensus 587 ~~~~~g~--------------~~~A~~~~~~~~~~g 608 (634)
++...|+ +++|.+++++..+.+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888776 466777776666533
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00025 Score=64.16 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 509 IPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH-G--NVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
+-|...|-.|...|...|+...|...|.+. ...| ++..+..+..++... | +..++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447889999999999999999999999988 4444 667777777775433 2 4679999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCcCCCC
Q 036704 584 LCNIYASSGKWEEVARLMGSMKERGVRKVPG 614 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 614 (634)
|+..+..+|++.+|...++.|++.....+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999877555543
No 158
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.81 E-value=0.041 Score=53.96 Aligned_cols=182 Identities=10% Similarity=0.135 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC---ChHHHHHHHhcCCC----CChhhHHHHHHHHHhcCChHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG---SLGSARELFNFMED----PDVVSWSSLIVGYAQFGCGEEALKL 463 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~ 463 (634)
.+++..+++..++.-..-+..+|..+.+.--..- ..+.....++++.. .-..+|..+++.-.+....+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4455666666554433334444444443211111 24555555555542 2234788888888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---C
Q 036704 464 FRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM---A 539 (634)
Q Consensus 464 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~ 539 (634)
|.++.+.+..+ ....+.+++..+|. ++.+.|.++|+.-.+++| -+.......++-+...++-..|..+|++. .
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999998777 67777888887765 889999999998887543 34455567888889999999999999998 2
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 540 FDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 540 ~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
..| ....|..++.--...|+...+.++-++.....|
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 344 356999999999999999999999998887666
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.022 Score=57.32 Aligned_cols=191 Identities=10% Similarity=-0.010 Sum_probs=91.0
Q ss_pred cCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHH------HHHhhccCChhH
Q 036704 25 CMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADL------ISACSSLRSLQL 98 (634)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~~ 98 (634)
.-.+++|.+..+.-|+| ..|. .+...-...-.++-|...|-+...-.|++.-...-... ...-+--|++++
T Consensus 676 ~vgledA~qfiEdnPHp--rLWr-llAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 676 AVGLEDAIQFIEDNPHP--RLWR-LLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred HhchHHHHHHHhcCCch--HHHH-HHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 33467777766654444 6676 44444455555666666665554433332111100000 011112355666
Q ss_pred HHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC-----CCccchHHHHHHHHhCCChhHHHHHHHHHH
Q 036704 99 GRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ-----RNVVSWTAMIAGCSQNGQENAAIELYVQML 173 (634)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 173 (634)
|.++|-+|-.++ .-+..+.+.|+|-...++++.-.. .-..+|+.+-..++....+++|.+.|..-.
T Consensus 753 aek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 753 AEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666665554433 234555566666666666654321 112245555555555556666665554322
Q ss_pred HCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhc
Q 036704 174 QSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSS 241 (634)
Q Consensus 174 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (634)
. . ...+.++.+...+++.+.+-. .++.+....-.+..++...|.-++|.+.+-+
T Consensus 824 ~------~---e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 824 D------T---ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred c------h---HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1 0 112223333333332222221 2344455555666677777777777665543
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.78 E-value=0.00027 Score=60.98 Aligned_cols=93 Identities=13% Similarity=-0.020 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
...+..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..+++++...|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777778889999999988887 33232 3578889999999999999999999999999999888888888
Q ss_pred HHH-------hcCChHHHHHHHHHH
Q 036704 587 IYA-------SSGKWEEVARLMGSM 604 (634)
Q Consensus 587 ~~~-------~~g~~~~A~~~~~~~ 604 (634)
++. +.|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666666544
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=4.3e-05 Score=54.23 Aligned_cols=53 Identities=25% Similarity=0.454 Sum_probs=42.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
...|++++|++.++++++..|+++.++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888888877653
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.76 E-value=0.001 Score=62.43 Aligned_cols=135 Identities=12% Similarity=0.156 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA-CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
.+|..+++...+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367888888888888999999999998653 3345555554444 33357788899999999975 4557778889999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 521 LLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+.+..+.+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999998 33333 348999999999999999999999999998887544
No 163
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.73 E-value=0.085 Score=55.12 Aligned_cols=488 Identities=11% Similarity=0.108 Sum_probs=255.6
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHH--hhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCCh
Q 036704 54 LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISA--CSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSL 131 (634)
Q Consensus 54 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 131 (634)
....+++.+|+.-...+.++ .|+. .|..++.+ +.+.|+.++|..+++.....+. .|..+...+..+|...++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 45678899999999999876 2332 33444444 4689999999999998876663 3888999999999999999
Q ss_pred HHHHHHhccCCC--CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCC-Cc---------hh
Q 036704 132 EDARMVFDEMPQ--RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLC-CV---------GL 199 (634)
Q Consensus 132 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~---------~~ 199 (634)
++|..+++...+ |+......+..+|++.+++.+-.+.--+|-+ ..+-+...|-++++...... .. ..
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999999876 5544445566677787776654444444433 34445666667776554221 11 12
Q ss_pred HhHHHHHHHHhc-CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhH
Q 036704 200 GRQLHAHVIKSE-HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASW 278 (634)
Q Consensus 200 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~ 278 (634)
|.+.++.+.+.+ .--+..-.......+...|++++|..++..- +.+....-+...-
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~-----------------------la~~l~~~~~~l~ 229 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAIT-----------------------LAEKLTSANLYLE 229 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHH-----------------------HHHhccccchHHH
Confidence 344444444433 1111111111223344556677777666221 1111112233444
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhH
Q 036704 279 NTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGE 358 (634)
Q Consensus 279 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (634)
+--+..+...++|.+..++-.++...|. |. |...+.. ..++++....+.......+.. ..+.
T Consensus 230 ~~~~dllk~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~s-------------v~klLe~~~~~~a~~~~s~~~-~l~~ 291 (932)
T KOG2053|consen 230 NKKLDLLKLLNRWQELFELSSRLLEKGN--DD--YKIYTDS-------------VFKLLELLNKEPAEAAHSLSK-SLDE 291 (932)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhCC--cc--hHHHHHH-------------HHHHHHhcccccchhhhhhhh-hHHH
Confidence 4556667777788887777777766642 21 2222211 111222111111111111100 1222
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhh---ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhc
Q 036704 359 LFRLFSLMLASQTKPDHITFNDVMGACA---AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNF 435 (634)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (634)
..+...+..... ....|-+-+.+.. .-|+.+++...|-+ +-|-.| .|..=+..|.-.=..+.-..++..
T Consensus 292 ~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~ 363 (932)
T KOG2053|consen 292 CIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSK 363 (932)
T ss_pred HHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHH
Confidence 222222222211 1112223233332 34555554433322 233222 222223334433444555556655
Q ss_pred CCC--CChh-----h--HHHHHHHHHhcC-----ChHHHHHHHHHHH---hCCCCC------CH---------HHHHHHH
Q 036704 436 MED--PDVV-----S--WSSLIVGYAQFG-----CGEEALKLFRRMR---SSGVRP------NH---------VTLVGVL 483 (634)
Q Consensus 436 ~~~--~~~~-----~--~~~l~~~~~~~~-----~~~~a~~~~~~m~---~~~~~p------~~---------~~~~~l~ 483 (634)
... ++.. . +...+..-...| +.+....++.+.. ++|... +. -+.+.++
T Consensus 364 l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Li 443 (932)
T KOG2053|consen 364 LVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLI 443 (932)
T ss_pred hhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHH
Confidence 542 2222 0 112222222223 2344455554433 445332 21 1345677
Q ss_pred HHhcccCCHH---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCCHHHHHHHHHHHHhc
Q 036704 484 TACSHVGLVE---EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAF---DDDIVVWKSLLASCKTH 557 (634)
Q Consensus 484 ~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~ 557 (634)
..+.+.++.. +|+-+++..... -+.+..+--.+|..|.--|-+..|.+.|+.+.+ +-|..-+ .+...+...
T Consensus 444 d~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~ 520 (932)
T KOG2053|consen 444 DLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETS 520 (932)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhc
Confidence 7888888765 455555555532 223445555788999999999999999999943 3333322 234446678
Q ss_pred CCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCChHHHHHH
Q 036704 558 GNVDVGKRAAENILKIDPTNSA-ALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 558 g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 600 (634)
|++..+...+....+..-++.. +-..++.+ .+.|.+.+-.+.
T Consensus 521 g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em 563 (932)
T KOG2053|consen 521 GRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEM 563 (932)
T ss_pred ccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHH
Confidence 8999999999988875443222 22233333 345666655544
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.72 E-value=0.00013 Score=52.61 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=51.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 551 LASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 551 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
...|.+.+++++|.+++++++..+|+++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999998887543
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.0063 Score=50.60 Aligned_cols=130 Identities=11% Similarity=0.092 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHH
Q 036704 473 RPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD---DIVVWK 548 (634)
Q Consensus 473 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~ 548 (634)
.|+...-..|..+....|+..+|...|++.... -+-.|..+.-.+..+....+++.+|...++++ ...| ++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 567777777888888899999999999988763 34456777778888888889999999888887 2223 344556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
.+.+.+...|.+..|+..|+.++.-.|. +..-...+..+.++|+..+|..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 7788888999999999999999887774 444555566788888777765444333
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=5.3e-05 Score=43.70 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDREL 306 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (634)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988774
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00014 Score=50.98 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=51.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
+...+...|++++|.+.|+++ ...| +...+..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999998 5556 577899999999999999999999999999999875
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.00085 Score=65.42 Aligned_cols=101 Identities=9% Similarity=-0.082 Sum_probs=79.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhc
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARA 525 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 525 (634)
....+...|++++|+..|+++++.. +-+...|..+..++...|++++|...++++... .| +...+..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999874 235777888888999999999999999999853 44 566788888999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036704 526 GRVHEAEDFINQM-AFDDDIVVWKSLL 551 (634)
Q Consensus 526 g~~~~A~~~~~~~-~~~~~~~~~~~l~ 551 (634)
|++++|+..|++. ...|+......++
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999987 5566544433333
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=5.7e-05 Score=43.55 Aligned_cols=31 Identities=29% Similarity=0.622 Sum_probs=25.1
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 036704 147 VSWTAMIAGCSQNGQENAAIELYVQMLQSGL 177 (634)
Q Consensus 147 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 177 (634)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00059 Score=52.10 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=54.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 558 (634)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++.. ...| +..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444455556666666666665532 1222244555556666666666666666655 2222 3346666666777777
Q ss_pred CHHHHHHHHHHHHhcCC
Q 036704 559 NVDVGKRAAENILKIDP 575 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p 575 (634)
+++.|...++++.+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777766655
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=0.00014 Score=54.14 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDD-IVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
|+++.|+.+++++.+.....++...+-.+..+|.+.|++++|.+++++....|. ......++.+|...|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 455555555555554311111233333355555555555555555555322222 2333344555555666666666555
Q ss_pred H
Q 036704 569 N 569 (634)
Q Consensus 569 ~ 569 (634)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 172
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0017 Score=60.95 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=118.8
Q ss_pred CChhhHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HhcccCCHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 439 PDVVSWSSL-IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLT--ACSHVGLVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 439 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
|...+|..| ..++.-.|+.++|...--...+.. + ...+..+++ ++...++.+.|...|++.. ...|+....
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~s 239 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKS 239 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhH
Confidence 333445444 345667788888888776666553 1 122333333 3345678888888888877 456654332
Q ss_pred HHH-------------HHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 516 SCV-------------VDLLARAGRVHEAEDFINQM-AFDD-----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 516 ~~l-------------~~~~~~~g~~~~A~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
... .+-..+.|++..|.+.|.+. .+.| +...|.....+..+.|+.++|+.--+.+++++|.
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 221 23446789999999999987 4444 4556777778888999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 577 NSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
-..++..-+.++...++|++|.+-+++..+.--
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999998876433
No 173
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.66 E-value=0.06 Score=51.52 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSG-VRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
..|..+++.-.+....+.|..+|-++.+.| +.++...+++++..++. |++..|..+|+.-... ++.+.......+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 457778888888888999999999999998 66778888888886654 8899999999987653 3333344456777
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 521 LLARAGRVHEAEDFINQM--AFDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.+.+.++-+.|..+|+.. .+..+ ...|..++.--...|+...+..+-+++.+..|...
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 788899999999999966 33333 56889999988899999999999999999888753
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.64 E-value=0.0019 Score=65.91 Aligned_cols=139 Identities=10% Similarity=0.003 Sum_probs=78.7
Q ss_pred CChhhHHHHHHHHH--hc---CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhccc--------CCHHHHHHHHHHHHH
Q 036704 439 PDVVSWSSLIVGYA--QF---GCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHV--------GLVEEGLQLYRIMQN 504 (634)
Q Consensus 439 ~~~~~~~~l~~~~~--~~---~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 504 (634)
.+...|...+++.. .. ++...|..+|++..+. .|+ ...+..+..++... ++...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44455555555532 22 2356777778887776 455 33343333322211 112233333333222
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 505 EYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 505 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
......+...+..+.-.....|++++|...+++. ...|+...|..++..+...|+.++|.+.++++..++|.+++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1012234455666655555667777777777777 55567677777777777777777777777777777777664
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0027 Score=54.94 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVV 519 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 519 (634)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.... .| +...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 445555555566666666666666554432221 234555555555666666666666655532 22 233334444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 520 DLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
.++...|+...+..-++.. ...+++|.+.++++.+.+|++ +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 4444444444333221111 012677888888888888876 334444444444
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=97.58 E-value=0.002 Score=53.03 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=69.1
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 597 (634)
--+...|++++|..+|.-+ - ...+..-|..|..++...+++++|+..|..+..++++|+......+.+|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3445678888888888876 2 2236667788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 036704 598 ARLMGSMKE 606 (634)
Q Consensus 598 ~~~~~~~~~ 606 (634)
...|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888887765
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.55 E-value=0.00014 Score=51.49 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=41.5
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 523 ARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
...|++++|++.|+++ ...| +...+..++.+|.+.|++++|.++++++....|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3466777777777776 3333 5666667777777777777777777777777777655555443
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.0052 Score=58.02 Aligned_cols=126 Identities=20% Similarity=0.210 Sum_probs=76.2
Q ss_pred HHHHHHHhccc-CCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---C-----CCCHH
Q 036704 479 LVGVLTACSHV-GLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQMA---F-----DDDIV 545 (634)
Q Consensus 479 ~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~~~~~ 545 (634)
+..+...|... |++++|.+.|++...-+..... ..++..+...+.+.|++++|.++|++.. . +.+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34455567777 8888888888887754332222 3345667788889999999999998871 1 11121
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHhc--CChHHHHHHHHHH
Q 036704 546 -VWKSLLASCKTHGNVDVGKRAAENILKIDPTN-----SAALVLLCNIYASS--GKWEEVARLMGSM 604 (634)
Q Consensus 546 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 604 (634)
.+...+-++...||...|.+.+++....+|.- ..+...|+.++-.. ..+++|..-|+.+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 23344456667889999999999998887752 23445555555432 3455555555443
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.50 E-value=0.002 Score=50.86 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 036704 518 VVDLLARAGRVHEAEDFINQM---AFDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT---NSAALVLLCNIYA 589 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 589 (634)
+..++-..|+.++|+.+|++. +..+. ...+..+...+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555666666666666665 22221 235556666677777777777777777776666 5555556666677
Q ss_pred hcCChHHHHHHHHHH
Q 036704 590 SSGKWEEVARLMGSM 604 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~ 604 (634)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777665443
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.47 E-value=0.0017 Score=49.13 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=61.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCC-CCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcC
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDREL-IPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQ 355 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 355 (634)
+-...|..+...+++.....+|..+++.|+ .|+..+|+.++.+.++..--..+ +.++
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~----------------------ie~k 84 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED----------------------IENK 84 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh----------------------HHHH
Confidence 344566777777999999999999999999 99999999999887654321111 1113
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 036704 356 AGELFRLFSLMLASQTKPDHITFNDVMGACA 386 (634)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 386 (634)
.-..+..++.|...+++|+..||+.++..+.
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 4455666666666667777777776666554
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.02 Score=52.41 Aligned_cols=173 Identities=12% Similarity=0.039 Sum_probs=100.2
Q ss_pred HHHHHhhcCChHHHHHHHhcCCC--CChhh----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-
Q 036704 416 LMDMYVKCGSLGSARELFNFMED--PDVVS----WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH- 488 (634)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 488 (634)
....+...|++++|.+.|+.+.. |+... .-.+..++.+.+++++|...+++..+....-....+.....+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445566777777777777753 33321 133456677778888888888887776322112222222222221
Q ss_pred -c---------------CC---HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 036704 489 -V---------------GL---VEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKS 549 (634)
Q Consensus 489 -~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 549 (634)
. .| ...|...|+.+.+. |-...-..+|...+..+...--... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 11 12344444444432 2222223344433333311100111 14
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+..-|.+.|.+..|+.-++.+++..|+. ..++..++.+|.+.|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5666889999999999999999977764 4567778889999999999999877654
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0031 Score=61.57 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=86.3
Q ss_pred CCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC----CChhh
Q 036704 370 QTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT--GLALDVFVMNGLMDMYVKCGSLGSARELFNFMED----PDVVS 443 (634)
Q Consensus 370 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 443 (634)
+.+.+...+..+++.+....+++.+..++.+.+.. ....-..+..++++.|...|..+.+..++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34666777777788888888888888887777744 3333345556788888888888888888776553 78888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 489 (634)
++.|+..+.+.|++..|.++...|...+...++.|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777776666666666555555443
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.43 E-value=0.0074 Score=61.67 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=98.1
Q ss_pred CCCCCHHHHHHHHHHhccc-----CCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhc--------CChHHHHHHHH
Q 036704 471 GVRPNHVTLVGVLTACSHV-----GLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLARA--------GRVHEAEDFIN 536 (634)
Q Consensus 471 ~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~ 536 (634)
+.+.+...|...+++.... ++...|..+|+++.+ ..|+- ..+..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456788888888775432 347789999999984 46763 3444443333322 12344455554
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 537 QM----AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 537 ~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+. ....++..+..+...+...|++++|...++++++++| +..+|..++.++...|+.++|.+.+++..+.+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43 2334667888887777788999999999999999999 67899999999999999999999999987754
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.41 E-value=0.0085 Score=49.24 Aligned_cols=95 Identities=11% Similarity=-0.053 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...-.+...+...|++++|.++|+-+.. +.| +..-|-.|.-++...|++++|+..|... ...| |+..+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3344445556678888888888888773 344 4555667888888888888888888887 3334 67788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 036704 554 CKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~ 574 (634)
+...|+.+.|++.|+.++...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 889999999999888888755
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.40 E-value=0.0015 Score=63.77 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=87.2
Q ss_pred CCCCcchhhHHHHHHHccCChHHHHHHhccCCC-C-----CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH
Q 036704 111 CQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ-R-----NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTF 184 (634)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 184 (634)
.+.+......+++.+....+++.+..++-+... | -..+.+++|+.|.+.|..+.++.+++.=...|+-||..||
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 355555666677777777777777777666553 1 2335568888888888888888888888888888888888
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 036704 185 GSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKF 229 (634)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 229 (634)
+.||..+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777666666555444444444
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.36 E-value=0.029 Score=56.02 Aligned_cols=257 Identities=12% Similarity=0.083 Sum_probs=146.0
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
+-...+.+=+..|...|.+++|..+- --|+. ..-|..+......+-+++.|.+.+..+...
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia----clgVv--~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------- 614 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA----CLGVT--DTDWRELAMEALEALDFETARKAYIRVRDL------------- 614 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc----cccee--cchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence 34445555566677788887776431 11222 222333333333344455555444443322
Q ss_pred hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 036704 353 QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAREL 432 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (634)
.+-+...-++++++.|-.|+... +...|+-.|++.+|.++|.+ .|.. +..+.+|.....++.|.++
T Consensus 615 --~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~ 680 (1081)
T KOG1538|consen 615 --RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEF 680 (1081)
T ss_pred --HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHH
Confidence 34455566777788887777653 34566777888888877754 3322 2334445445555555555
Q ss_pred HhcCCC--------------CChhhHHHHHHHHHhcCChHHHHHHHH------HHHhCCC---CCCHHHHHHHHHHhccc
Q 036704 433 FNFMED--------------PDVVSWSSLIVGYAQFGCGEEALKLFR------RMRSSGV---RPNHVTLVGVLTACSHV 489 (634)
Q Consensus 433 ~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~------~m~~~~~---~p~~~~~~~l~~~~~~~ 489 (634)
...... .+..--.+-...+...|+.++|..+.- -+.+-+. ..+..+...+...+.+.
T Consensus 681 ~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l 760 (1081)
T KOG1538|consen 681 LGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKL 760 (1081)
T ss_pred hhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhc
Confidence 443321 111111223344556676666654421 1222221 22456666666667777
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-----------HHHHHHHHHHHhc
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI-----------VVWKSLLASCKTH 557 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-----------~~~~~l~~~~~~~ 557 (634)
..+.-|.++|.+|-. ..+++......++|.+|..+-++. ...||. .-+...-++|.+.
T Consensus 761 ~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 761 DSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 788888888888753 346788888999999999999888 444442 2233445667777
Q ss_pred CCHHHHHHHHHHHHh
Q 036704 558 GNVDVGKRAAENILK 572 (634)
Q Consensus 558 g~~~~a~~~~~~~~~ 572 (634)
|+..+|.++++++..
T Consensus 831 Gr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 831 GRQREAVQVLEQLTN 845 (1081)
T ss_pred cchHHHHHHHHHhhh
Confidence 777777777777654
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.36 E-value=0.00019 Score=42.05 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 036704 567 AENILKIDPTNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
|+++++.+|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.35 E-value=0.0018 Score=59.59 Aligned_cols=100 Identities=8% Similarity=0.087 Sum_probs=50.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHH
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD----DIVVWKSLLA 552 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~ 552 (634)
|...+..+.+.|++++|...|+.+.+.+.-.+ ....+-.+..+|...|++++|...|+.+ ...| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44433333445666666666666665421111 0123344555556666666666666555 1111 2334444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.+...|+.++|...|+++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55555666666666666666655544
No 189
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.0028 Score=59.57 Aligned_cols=129 Identities=10% Similarity=0.089 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR-AGRVHEAEDFINQM--AFDDDIVVWKSLLAS 553 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 553 (634)
.+|..+++..-+.+..+.|..+|.++.+. -..+..+|......-.+ .++.+.|.++|+.. .+..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888899999999999853 23345555555555334 56777799999998 555678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNS---AALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+...|+.+.|..+|++++..-|.+. .+|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999776644 68899998888999999999999988763
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.33 E-value=0.0011 Score=64.10 Aligned_cols=65 Identities=15% Similarity=0.024 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA---ALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+...+..+..+|...|++++|+..|+++++++|++.. +|++++.+|..+|+.++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666666666553 3666666666666666666666666553
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.32 E-value=0.0029 Score=59.29 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHH---HHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCC-CCH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRI---MQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-------AFD-DDI 544 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-~~~ 544 (634)
..|..|-..|.-.|+++.|+...+. +.+++|-.. ....+..+.+++.-.|+++.|.+.|+.. +.. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4466666667777889988876553 333344433 2345667888888889999999988765 211 133
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKI----D--PTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
-...+|...|.-..++++|+.+..+=+.+ . .-...++.+|+.+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567788888888899999888775542 1 22566888899999999999999988776654
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.32 E-value=0.0035 Score=47.57 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcccC--------CHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSGV-RPNHVTLVGVLTACSHVG--------LVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3345566666889999999999999998 889999999988877643 244567788888876 899999999
Q ss_pred HHHHHHHHh
Q 036704 516 SCVVDLLAR 524 (634)
Q Consensus 516 ~~l~~~~~~ 524 (634)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988877754
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.30 E-value=0.00068 Score=48.12 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG-NVDVGKRAAENILKIDP 575 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 575 (634)
++..|..+...+...|++++|+..|++. ...| +...+..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566778888888999999999999887 4445 5678888999999999 79999999999999887
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.30 E-value=0.0093 Score=49.65 Aligned_cols=110 Identities=21% Similarity=0.302 Sum_probs=93.9
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
+++..+....-|+...--.|..++.+.|+..||...|++. ....|...+..+.++....++...|...++++.+..|
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3444444466788777778999999999999999999998 4455888999999999999999999999999999888
Q ss_pred C--CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 576 T--NSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 576 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
. ++.....++..|..+|++++|+..|+-..+.-
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 6 67778888999999999999999999887754
No 195
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0061 Score=52.49 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=47.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCK 555 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 555 (634)
+..+...+...|++++|...+++......-.+ ...++..+..++...|++++|+..+++. ...| ....+..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34444444455555555555555543211000 1224445555555555555555555554 2222 2333444444444
Q ss_pred -------hcCCHH-------HHHHHHHHHHhcCCCC
Q 036704 556 -------THGNVD-------VGKRAAENILKIDPTN 577 (634)
Q Consensus 556 -------~~g~~~-------~a~~~~~~~~~~~p~~ 577 (634)
..|+++ +|..+++++++..|.+
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 556655 5555556666666653
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.27 E-value=0.1 Score=50.17 Aligned_cols=166 Identities=18% Similarity=0.126 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCCC-C------hhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHH
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMEDP-D------VVSWSSLIVGYAQ---FGCGEEALKLFRRMRSSGVRPNHVTL 479 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~ 479 (634)
..+...++-+|....+++...++++.+..+ + ...-....-++.+ .|+.++|+.++..+....-.+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445555677777777777777777642 1 1111223344555 67888888888776555556777777
Q ss_pred HHHHHHhcc---------cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH----HHHHHH---HhC-----
Q 036704 480 VGVLTACSH---------VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVH----EAEDFI---NQM----- 538 (634)
Q Consensus 480 ~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~----- 538 (634)
..+.+.|-. ....++|...|.+.- .+.|+...--.++..+.-.|... +..++- ..+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 776665532 123667777776655 44565444333333444444322 222222 111
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 539 --AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 539 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
....+-..+-.++.++.-.|++++|.+.++++.+..|+.-
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1223555667788888899999999999999999877644
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.26 E-value=0.012 Score=50.78 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=79.6
Q ss_pred CCChhhHHHHHHHHHcC-----CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh
Q 036704 272 SPNLASWNTIIAGVASC-----SNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP 346 (634)
Q Consensus 272 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 346 (634)
..|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+ |.+ .|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-
Confidence 46778888888887654 6777778888999999999999999999987765 221 1211
Q ss_pred HHhHHHhc---CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccH-HHHHHHHHHH
Q 036704 347 VCNAILQH---QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASL-EMGTQLHCYI 401 (634)
Q Consensus 347 ~~~~ll~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 401 (634)
.+.+...+ +-+-|++++++|...|+-||..|+..++..+.+.+.. .+..++.-.|
T Consensus 107 ~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 107 FFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 22222222 6677888888888888888888888888888876653 3334443333
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.25 E-value=0.00056 Score=43.14 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
.++..+..+|...|++++|+++++++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999988864
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.24 Score=46.75 Aligned_cols=281 Identities=9% Similarity=-0.052 Sum_probs=172.8
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHh--hccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHH
Q 036704 56 KQNLYNEALVAFDFLQNNTNFRIRPSTYADLISAC--SSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLED 133 (634)
Q Consensus 56 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 133 (634)
..|+-..|.++-.+..+. +..|..-+..|+.+- .-.|+++.|++-|+.|.... ....--...|.-.-.+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHH
Confidence 456777777766665543 445556666666544 34689999999999997421 1111112223223346788888
Q ss_pred HHHHhccCCC--C-CccchHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhh--HHHHHHHhh---cCCCchhHhHHH
Q 036704 134 ARMVFDEMPQ--R-NVVSWTAMIAGCSQNGQENAAIELYVQMLQSG-LMPDQFT--FGSIIRACS---GLCCVGLGRQLH 204 (634)
Q Consensus 134 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~ll~~~~---~~~~~~~a~~~~ 204 (634)
|...-+..-. | -...+.+.+...+..|+++.|+++++.-+... +.++..- -..|+.+-+ -..+...|...-
T Consensus 173 Ar~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 173 ARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8877766543 2 33478888999999999999999998776543 3444322 223333221 112333444443
Q ss_pred HHHHHhcCCCChh-HHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccch-------HHHHHhcCCCCChh
Q 036704 205 AHVIKSEHGSHLI-SQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDF-------ARTVFNEMESPNLA 276 (634)
Q Consensus 205 ~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~-------a~~~~~~~~~~~~~ 276 (634)
.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+..++.--..+....+.++ -.+-++.|.+.|..
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchH
Confidence 33333 445432 222345678889999999999998887766654445555544443 12234556667777
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCC
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCAC-TSPLSLYQGMQIHSYIIKKGFYS 343 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~ 343 (634)
+--.+..+....|++..|..--+.... ..|....|..+...- ...|+-.++.+.+.+.++..-.|
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 777888888888888777665554433 367777777776554 34588888888887777755444
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.13 E-value=0.00088 Score=48.93 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKI----DPT---NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+++.+...|...|++++|+..++++++. .++ -..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888888888888888888752 222 255788888889999999999998887654
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.10 E-value=0.0095 Score=54.90 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCN 586 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 586 (634)
|..-+..+.+.|++++|...|+.+ ...|+ +..+..++..|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445567788888777776 33332 3466677777778888888888888888766664 445555677
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 036704 587 IYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++...|++++|..+++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777778888888888777653
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.10 E-value=0.0023 Score=45.99 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=53.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
..|.+.+++++|.++++.+ ...| ++..+...+..+...|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5678889999999999988 4445 566788888889999999999999999999999877665443
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.045 Score=48.47 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHH-----H
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRS-----C 517 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ 517 (634)
..+.++..+.-.|.+.-.+.++.+.++...+-++.....+.+.-.+.||.+.|...|++..+. .-..+....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345566777777888888999999998765667888888999999999999999999988765 3333333333 3
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 518 VVDLLARAGRVHEAEDFINQMA--FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
....|.-.+++.+|...+.++. ...++...|.-.-+..-.|+...|++.++.+.+..|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 3355667788999999998882 2235555555555556678999999999999999997543
No 204
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.018 Score=54.44 Aligned_cols=94 Identities=7% Similarity=0.023 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHhC------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------
Q 036704 514 RRSCVVDLLARA-GRVHEAEDFINQM------AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS------ 578 (634)
Q Consensus 514 ~~~~l~~~~~~~-g~~~~A~~~~~~~------~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------ 578 (634)
.+..+...|... |++++|++.|++. ...+ -...+..++..+.+.|++++|.++|+++.....+++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344556677777 8999999999887 1122 134677888889999999999999999887433221
Q ss_pred -hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 579 -AALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 579 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..+...+-++...|+...|.+.+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12334455677889999999999998764
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.07 E-value=0.28 Score=46.34 Aligned_cols=229 Identities=15% Similarity=0.153 Sum_probs=151.3
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC-----CCChh--hHHHHHHH
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME-----DPDVV--SWSSLIVG 450 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~ 450 (634)
+..|.-...+.|+.+.|.++-...-..-.. -.....+.+...+..|+++.|+++++.-. +++.. .--.|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 444555556788888888888877765543 35567788899999999999999998654 23332 12223322
Q ss_pred HH---hcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 451 YA---QFGCGEEALKLFRRMRSSGVRPNHVT-LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 451 ~~---~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
-. -.-+...|...-.+..+ +.|+... -..-..++.+.|+..++-.+++.+-+ ..|.+.+....+ +.+.|
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~g 308 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSG 308 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCC
Confidence 11 12345555555544444 4677433 33345788899999999999999985 466666654332 34555
Q ss_pred ChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CChHHHHHH
Q 036704 527 RVHEAEDFINQM----AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS-GKWEEVARL 600 (634)
Q Consensus 527 ~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~ 600 (634)
+ .+..-+++. ..+| +......+..+....|++..|..--+.+....|... +|..++.+-... |+-.++...
T Consensus 309 d--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 309 D--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred C--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHH
Confidence 4 333333333 4455 456777788888899999999999999999999654 677777776544 999999988
Q ss_pred HHHHHhCCCcCCCCccEEEeC
Q 036704 601 MGSMKERGVRKVPGQSWIEIQ 621 (634)
Q Consensus 601 ~~~~~~~g~~~~~~~~~~~~~ 621 (634)
+-+..+. ..+..|...+
T Consensus 386 lAqav~A----PrdPaW~adg 402 (531)
T COG3898 386 LAQAVKA----PRDPAWTADG 402 (531)
T ss_pred HHHHhcC----CCCCcccccC
Confidence 8766543 2333565543
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.95 E-value=0.027 Score=50.10 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=38.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCChHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSA---ALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 599 (634)
++..|.+.|.+..|..-++.+++..|+.+. ++..++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 566688999999999999999999888554 56677888999998885543
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.06 Score=47.71 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=106.9
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--------AFDDDIVVWKS 549 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~ 549 (634)
....++..+.-.|.+.-....++++++. ..+.++.....|...-...|+.+.|...|++. +.+....+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455666677778888889999999875 55667888889999999999999999999965 34445556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
....|.-.+++..|...+.++...+|.++.+.+.-+-++.=.|+..+|.+.++.|++.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66677788899999999999999999999999988777777899999999999998754
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.91 E-value=0.41 Score=45.63 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
+.-+...|+...|.++-.+.. .|+..-|..-+.+++..++|++-.++-.. +-++.-|..+++++.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCC
Confidence 444455555555555544432 35555566666666666666554443211 1123445556666666666
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 528 VHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
..+|..++.+++. ..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHH
Confidence 6666666655321 2234445555666555544
No 209
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.45 Score=45.40 Aligned_cols=87 Identities=9% Similarity=-0.066 Sum_probs=57.2
Q ss_pred hhccccHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHH---HHHHHHhcCChH
Q 036704 385 CAAMASLEMGTQLHCYIMKT---GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSS---LIVGYAQFGCGE 458 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 458 (634)
..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--+...+.|..-.-. -..++...++++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777776643 344556666666777778888888888777777655543222 234455667788
Q ss_pred HHHHHHHHHHhCC
Q 036704 459 EALKLFRRMRSSG 471 (634)
Q Consensus 459 ~a~~~~~~m~~~~ 471 (634)
+|.+-+++..+..
T Consensus 339 ~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 339 EAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHhhc
Confidence 8888887776653
No 210
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.032 Score=44.16 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=58.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHH
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLA 523 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 523 (634)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888877775544 34555666777777888888888877775421111 2222233445666
Q ss_pred hcCChHHHHHHHHhC
Q 036704 524 RAGRVHEAEDFINQM 538 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~ 538 (634)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766543
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.84 E-value=0.0043 Score=52.01 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCcCCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK-----ERGVRKVP 613 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~ 613 (634)
.+..++..+...|++++|...+++++..+|-+..++..++.+|...|+..+|.++|+++. +.|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 566777788899999999999999999999999999999999999999999999998875 35765554
No 212
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.79 E-value=0.038 Score=44.61 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=62.6
Q ss_pred HHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhc
Q 036704 520 DLLARAGRVHEAEDFINQM----AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA---ALVLLCNIYASS 591 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 591 (634)
....+.|++++|.+.|+.+ +..| ....-..++.+|.+.|++++|...+++.++++|.++. ++...+-++.++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3445678888888888887 3333 3456667888889999999999999999998888654 444445455555
Q ss_pred CC---------------hHHHHHHHHHHHhC
Q 036704 592 GK---------------WEEVARLMGSMKER 607 (634)
Q Consensus 592 g~---------------~~~A~~~~~~~~~~ 607 (634)
.. ..+|..-|+.+++.
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 44 66777777777653
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.78 E-value=0.14 Score=46.96 Aligned_cols=187 Identities=11% Similarity=0.078 Sum_probs=101.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCccc---HHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHH
Q 036704 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPST---YADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMY 125 (634)
Q Consensus 49 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (634)
.....+...|++++|++.|+.+... .|-++.. ...+..++.+.++++.|...+++.++........-+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 4556678899999999999999875 3322222 2456788899999999999999999885333333444444443
Q ss_pred HccCChHHHHHHhccCCC--CCc-------cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCC
Q 036704 126 GKCGSLEDARMVFDEMPQ--RNV-------VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCC 196 (634)
Q Consensus 126 ~~~g~~~~A~~~~~~~~~--~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 196 (634)
+....-.....-+..+.. .|. ..+..++.-|=...-..+|...+..+... .-...+ .+.+.|.+.|.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~ 190 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGA 190 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCc
Confidence 311000000000111110 000 12233344443333444444433333321 001111 34444566677
Q ss_pred chhHhHHHHHHHHhc--CCCChhHHHHHHHHHHhcCChhHHHHHHhc
Q 036704 197 VGLGRQLHAHVIKSE--HGSHLISQNALIAMYTKFDRILDAWNVFSS 241 (634)
Q Consensus 197 ~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (634)
+..|..-++.+++.- .+........++.+|...|..++|..+...
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 777777777776653 222344555677778888888887776543
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.024 Score=53.68 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
.++..+.-++.+.+++.+|++..++. .. +++...+-.=..+|...|+++.|+..|+++++..|.|..+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667888999999999999998887 33 45778888889999999999999999999999999999999999887777
Q ss_pred cCChHH-HHHHHHHHHh
Q 036704 591 SGKWEE-VARLMGSMKE 606 (634)
Q Consensus 591 ~g~~~~-A~~~~~~~~~ 606 (634)
...+++ ..++|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 766555 4788888864
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.72 E-value=0.02 Score=49.55 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=68.4
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC----------------CHHHHH
Q 036704 438 DPDVVSWSSLIVGYAQ-----FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG----------------LVEEGL 496 (634)
Q Consensus 438 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~a~ 496 (634)
..+-.+|..++..|.+ +|..+-....+..|.+-|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4556666666666654 3666777778888888898888999999988876532 346688
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 497 QLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
+++++|... |+.||.+++..+++.+++.+.
T Consensus 124 ~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 899999876 999999999999998877664
No 216
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.71 E-value=0.21 Score=39.33 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=89.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 530 (634)
+...|..++..++..+..... +..-++-+|.-...+-+-+-..+.++.+-+-+.+. .+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 445688889999998887652 55556666666666666667777777765433322 2344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 531 AEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 531 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
....+-.++ .+....+..+......|+-+.-.+++..+.+....+|..+..++.+|.+.|+..+|.++++++=+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444443332 234455666777888999999999999988766668899999999999999999999999999998874
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.61 E-value=0.0036 Score=45.65 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-------A-FDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
.+++.+...|...|++++|++.+++. + ..|+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556666666777777776666665 1 1122 457778888888888888888888887653
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.57 E-value=0.0099 Score=55.89 Aligned_cols=222 Identities=15% Similarity=0.086 Sum_probs=134.1
Q ss_pred HHhhccccHHHHHHHHHHHHHhCCCCch----hHHHHHHHHHhhcCChHHHHHHHhcCC-------C--CChhhHHHHHH
Q 036704 383 GACAAMASLEMGTQLHCYIMKTGLALDV----FVMNGLMDMYVKCGSLGSARELFNFME-------D--PDVVSWSSLIV 449 (634)
Q Consensus 383 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~l~~ 449 (634)
.-+|+.|+......+|+.+++.|.. |. .+|..|..+|.-.+++++|+++-..=. . -...+-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888889999988887754 43 456667788888888888887654211 0 11122233444
Q ss_pred HHHhcCChHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHhcccCC--------------------HHHHHHHHHHHH-
Q 036704 450 GYAQFGCGEEALKLFRR----MRSSGVR-PNHVTLVGVLTACSHVGL--------------------VEEGLQLYRIMQ- 503 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~----m~~~~~~-p~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~- 503 (634)
.+--.|.+++|+-.-.+ ..+.|-+ .....+-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44455666665432221 2222211 122334444444543332 334444444221
Q ss_pred --HHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 504 --NEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-------AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 504 --~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.+.|-.. --..|..|.+.|.-.|+++.|+..-+.- +... ....+..+..++.-.|+++.|.+.|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111111 1234556666666778899998765432 2221 345778899999999999999999998764
Q ss_pred ----cCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 573 ----IDP--TNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 573 ----~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+.- ..+...++|+..|.-..++++|+.++.+=+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 322 256778889999999999999999877543
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=1.2 Score=46.12 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC
Q 036704 412 VMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL 491 (634)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 491 (634)
+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-.++-+.++ .+.-|.-.+.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 334444445555666666666666666666666666666666666665554443322 13444445566666666
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036704 492 VEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDF 534 (634)
Q Consensus 492 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 534 (634)
.++|.+.+.+.. |.. -.+.+|.+.|++.+|.++
T Consensus 760 ~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHH
Confidence 666665554442 111 344555566666555544
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.55 E-value=0.47 Score=47.87 Aligned_cols=88 Identities=11% Similarity=0.141 Sum_probs=62.9
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChh---------
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVV--------- 442 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--------- 442 (634)
+..+...+...+.+...+..|.++|..|-+. ..+++.....+++++|.++-++.++ +++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 3345555555666677778888888877532 3567788889999999999998875 3332
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 443 --SWSSLIVGYAQFGCGEEALKLFRRMRSS 470 (634)
Q Consensus 443 --~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 470 (634)
-|.---.+|.+.|+..+|..+++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2334456788889999999998887654
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.22 Score=45.57 Aligned_cols=105 Identities=16% Similarity=0.098 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC-CCCC-CHHHH
Q 036704 473 RPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA---GRVHEAEDFINQM-AFDD-DIVVW 547 (634)
Q Consensus 473 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~~-~~~~~ 547 (634)
+-|...|..|..+|...|+.+.|..-|....+- ..++...+..+..++... ....++.++|+++ ..+| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 336788888888888899999988888888753 233455555666555433 3567788888888 4445 67777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 548 KSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
..+...+...|++.+|...++.+++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 78888889999999999999999998876554
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.41 E-value=0.07 Score=52.05 Aligned_cols=141 Identities=10% Similarity=0.153 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHhccc---------CCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh
Q 036704 457 GEEALKLFRRMRS-SGVRPN-HVTLVGVLTACSHV---------GLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLAR 524 (634)
Q Consensus 457 ~~~a~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 524 (634)
.+.|+.+|.+... ..+.|+ ...|..+..++... .+..+|.++-++..+ +.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4567777777772 123555 45555555544322 123344444444442 222 44444455555555
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhcCChHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS--AALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.++++.|...|++. ...|+ ..+|......+...|+.++|.+.++++++++|.-. .+....+..|+..+ .++|..+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 56666666666666 44453 34555555555566666666666666666666532 23333343455444 3444444
Q ss_pred H
Q 036704 601 M 601 (634)
Q Consensus 601 ~ 601 (634)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 3
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.39 E-value=0.17 Score=45.00 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=67.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA 525 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (634)
...+...|++.+|...|+.+........ ......++.++.+.|+++.|...+++..+.++-.|... +...+.+.+.-
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~~ 90 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSYY 90 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHHH
Confidence 3445555666666666666655421111 23344455555566666666666666555433333221 11111111100
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----------------HHHHHHHH
Q 036704 526 GRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAA-----------------LVLLCNIY 588 (634)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~~ 588 (634)
+..... + ......+...+|...++.+++..|+++.+ -..++..|
T Consensus 91 ~~~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 00112234456777777777777776542 22467789
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036704 589 ASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~ 607 (634)
.+.|.+..|..-++.+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.015 Score=55.04 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 544 IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..++..+..+|.+.+++..|++...++++.+|+|.-+++.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3467788889999999999999999999999999999999999999999999999999999863
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.32 E-value=0.062 Score=43.03 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 471 GVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 471 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888777877887777543
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.6 Score=41.24 Aligned_cols=200 Identities=13% Similarity=0.076 Sum_probs=111.5
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCC--hhhHHHHHHHHHhc
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPD--VVSWSSLIVGYAQF 454 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~ 454 (634)
.|.-...+|...+++++|...+.+..+.- ..+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 35555667888889999888877776321 112222211 123344444444444322 22455566778888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC----CCChhHHHHHHHHHHhcCChHH
Q 036704 455 GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI----IPTRERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 455 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 530 (634)
|.++.|-..+++.-+. ....++++|+++|++...-... .--...+......+.+..++++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8877777766664331 1223444555555444321100 0112334445566677777777
Q ss_pred HHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchhHHHHHHHHHhcCChHHHH
Q 036704 531 AEDFINQM-------AFDDDI-VVWKSLLASCKTHGNVDVGKRAAENILK----IDPTNSAALVLLCNIYASSGKWEEVA 598 (634)
Q Consensus 531 A~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~ 598 (634)
|-..+.+- ..-|+. ..+-..+-.+.-..|+..|...++.-.+ ..|++..+...|+.+| ..|+.|++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 76666554 112222 2345555666677788888888887554 4466777788887765 457777766
Q ss_pred HHH
Q 036704 599 RLM 601 (634)
Q Consensus 599 ~~~ 601 (634)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 554
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.25 E-value=1.6 Score=44.20 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=122.4
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-H
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMEDPDV---VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVL-T 484 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~ 484 (634)
+...|+..+.--.+.|+.+.+.-+|+++.-|-. ..|-..+.-....|+.+.|..++....+-..+ .......+- .
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHH
Confidence 456788888888899999999999999875433 24555555555558888888888776655333 322222222 2
Q ss_pred HhcccCCHHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHH----HHH-H
Q 036704 485 ACSHVGLVEEGLQLYRIMQNEYGIIPTRE-RRSCVVDLLARAGRVHEAE---DFINQM-AFDDDIVVWKSL----LAS-C 554 (634)
Q Consensus 485 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~~~~~~~~~l----~~~-~ 554 (634)
-.-..|+...|..+++.+... . |+.. .-..-+....+.|+.+.+. +++... ..+.+..+...+ .+. +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 234578999999999999975 3 5432 3334456667888888888 555544 222232222222 222 4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
.-.++.+.|..++.++.+..|++...|..+......++
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45689999999999999999999999999988876665
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.20 E-value=1.3 Score=42.95 Aligned_cols=192 Identities=15% Similarity=0.146 Sum_probs=106.1
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhH-----HHHHHHHHh----hcCChHHHHHHHhcCCCCChh---h
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFV-----MNGLMDMYV----KCGSLGSARELFNFMEDPDVV---S 443 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~---~ 443 (634)
.+|..++....+.++...|.+.+.-+....+..+... -..+.+..+ ...+...-+.+|+.+...|+. .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL 378 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL 378 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 4677777788888888888888877764433221110 011112222 112233444555555433332 1
Q ss_pred HHHHHHH---HHhcCC-hHHHHHHHHHHHhCCCCC-CHH----HHHHHHHHhccc---CCHHHHHHHHHHHHHHhCCCC-
Q 036704 444 WSSLIVG---YAQFGC-GEEALKLFRRMRSSGVRP-NHV----TLVGVLTACSHV---GLVEEGLQLYRIMQNEYGIIP- 510 (634)
Q Consensus 444 ~~~l~~~---~~~~~~-~~~a~~~~~~m~~~~~~p-~~~----~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~- 510 (634)
-.-|+.+ +-+.|. -++|+.+++...+- .| |.. ++..+=.+|.+. ..+.+-..+-+-+ +..|+.|
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi-~e~gl~~i 455 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI-TEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCCcc
Confidence 1222222 344454 77888888887764 33 222 222222333221 2233333333333 3337777
Q ss_pred ---ChhHHHHHHHH--HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036704 511 ---TRERRSCVVDL--LARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENI 570 (634)
Q Consensus 511 ---~~~~~~~l~~~--~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 570 (634)
+...-|.|.++ +...|++.++.-.-.-+ .+.|++.++..++-+.....++++|...+..+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33444555433 45678888887666655 77888889998888888888999998887764
No 229
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=2.2 Score=44.83 Aligned_cols=170 Identities=10% Similarity=0.045 Sum_probs=101.6
Q ss_pred hhHHhhcCChHHHHHHhhcccCCCCccchHHHHHH----HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccC
Q 036704 19 WDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSS----LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLR 94 (634)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (634)
+.+..+..-+.-|..+.+.-.-. ++... .+.+. +-+.|++++|...|-+.... +.|. .+++-+....
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d-~d~~~-~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLD-EDTLA-EIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCC-HHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHHhcCHH
Confidence 45555666667777766543322 11111 33332 56788999988887766542 3332 4666677777
Q ss_pred ChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCcc-chHHHHHHHHhCCChhHHHHHHHHHH
Q 036704 95 SLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVV-SWTAMIAGCSQNGQENAAIELYVQML 173 (634)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 173 (634)
+....-.+++.+.+.|. .+...-+.|+.+|.+.++.++..+..+...+-... -....+..+.+.+-.++|..+-....
T Consensus 412 ~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 77778888888888884 44455567888999999888888877766521111 23455666666666666655544332
Q ss_pred HCCCCCChhhHHHHHHHhhcCCCchhHhHHHHH
Q 036704 174 QSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAH 206 (634)
Q Consensus 174 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (634)
. +......++. ..+++++|.+.+..
T Consensus 491 ~-----he~vl~ille---~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 491 K-----HEWVLDILLE---DLHNYEEALRYISS 515 (933)
T ss_pred c-----CHHHHHHHHH---HhcCHHHHHHHHhc
Confidence 2 2233333333 45566666665543
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.41 Score=43.75 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=64.7
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKS---LLASCKTHGNVDV 562 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~ 562 (634)
....|+..+|..+|+..... ..-+....-.++.+|...|+.+.|..++..++..-....+.. -+..+.+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44556666666666666643 222344445566677777777777777776643332222222 2223333333332
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 563 GKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 563 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
... +++-...+|+|...-..++..+...|+.++|++.+=.++++
T Consensus 222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 22333456767777777777777777777777666655554
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.01 E-value=2.2 Score=43.79 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=49.0
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHH-----
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSS----- 446 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 446 (634)
+-+....-.+...+.+.|.-++|.+.+-+ .+.+ .+.+..+...+++.+|.++-++..-|.+.+.-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQ 919 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 34444555566666777766666655432 2211 234556666677777777777665444433211
Q ss_pred ---------HHHHHHhcCChHHHHHHHHHHHh
Q 036704 447 ---------LIVGYAQFGCGEEALKLFRRMRS 469 (634)
Q Consensus 447 ---------l~~~~~~~~~~~~a~~~~~~m~~ 469 (634)
-|..+.+.|++-+|.+++.+|.+
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 13345556666666666666643
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.00 E-value=1.1 Score=40.26 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCC
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNS---AALVLLCNIYASSGKWEEVARLMGSMKERGVRKV 612 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 612 (634)
.+.+-|.+.|.+..|..-++++++.-|+.+ .++..+..+|.+.|..++|...-+- +..+.+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~p~s 237 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV-LGANYPDS 237 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcCCCC
Confidence 355668899999999999999999766644 4566677889999999999887554 44444333
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.99 E-value=0.042 Score=42.88 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=75.1
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---chhHHHHHHHHHhcC
Q 036704 519 VDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKID-PTN---SAALVLLCNIYASSG 592 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g 592 (634)
.-++...|+++.|++.|.+. ..-| ....|+.-.+++.-.|+.++|+.-+++++++. |.. -.+|..-+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35667899999999999987 4444 67899999999999999999999999999854 442 235666777899999
Q ss_pred ChHHHHHHHHHHHhCCCc
Q 036704 593 KWEEVARLMGSMKERGVR 610 (634)
Q Consensus 593 ~~~~A~~~~~~~~~~g~~ 610 (634)
+-+.|..-|+...+.|-+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 999999999998887743
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.093 Score=47.32 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=66.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM----AFDD-DIVVWKSLL 551 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~ 551 (634)
.|+.-+.. .+.|++..|...|....+.+.-.+ ....+--|.+++...|++++|..+|..+ +..| -+..+..+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45544443 355667777777777776432111 1222334667777777777777777766 2223 356777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
....+.|+.++|...|+++.+..|..+.+-.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 7777888888888888888888887665443
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.98 E-value=0.27 Score=39.83 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCCCCchh
Q 036704 560 VDVGKRAAENILKIDPTNSAA 580 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~~~~ 580 (634)
...|..-|+++++..|++..+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 568888888999999987643
No 236
>PRK15331 chaperone protein SicA; Provisional
Probab=95.94 E-value=0.27 Score=40.82 Aligned_cols=88 Identities=8% Similarity=-0.011 Sum_probs=69.9
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 560 (634)
..-+...|++++|..+|+-+..- + .-+..-+..|..++...+++++|+..|... -...|+...-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44456789999999999988753 2 224556778889999999999999999877 2234556677788999999999
Q ss_pred HHHHHHHHHHHh
Q 036704 561 DVGKRAAENILK 572 (634)
Q Consensus 561 ~~a~~~~~~~~~ 572 (634)
+.|+..|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999999888
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.074 Score=47.94 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM--AFD---DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT---NSAALVLLC 585 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~ 585 (634)
.|+.-++. .+.|++.+|...|... +.+ -.+..+--|..++...|+++.|...|..+.+..|+ -|.++.-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655544 4678899999999887 211 13445566889999999999999999999986665 556788899
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 036704 586 NIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.+..+.|+.++|-..|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999764
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.91 E-value=0.47 Score=48.29 Aligned_cols=161 Identities=16% Similarity=0.055 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSG-VRPN-----HVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
.+..+++...-.||-+.+++.+.+..+.+ +.-. .-.|..++..++. ..+.+.|.++++.+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 44455555666677777777776655432 2211 1223444443333 45678888888888854 4565
Q ss_pred hHHHH-HHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH-
Q 036704 513 ERRSC-VVDLLARAGRVHEAEDFINQM-AFDD-----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL- 584 (634)
Q Consensus 513 ~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l- 584 (634)
..|.. -...+...|++++|++.|++. ..+. ....+..++..+....++++|...+.++.+.+.-+...|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 55543 336667788999999999876 1111 234566677778888999999999999988666555544443
Q ss_pred HHHHHhcCCh-------HHHHHHHHHHHh
Q 036704 585 CNIYASSGKW-------EEVARLMGSMKE 606 (634)
Q Consensus 585 ~~~~~~~g~~-------~~A~~~~~~~~~ 606 (634)
+.++...|+. ++|.++++++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4456677888 888888887753
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.91 E-value=0.077 Score=41.46 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=68.8
Q ss_pred HHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCH--HHHHHHHHHHHhc
Q 036704 484 TACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM----AFDDDI--VVWKSLLASCKTH 557 (634)
Q Consensus 484 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~--~~~~~l~~~~~~~ 557 (634)
-+....|+.+.|++.|.+...- .+.....||.-..++.-.|+.++|++-+++. +.+... ..|-.-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3567889999999999988852 3346778898899999999999999888876 222111 1334444557888
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 036704 558 GNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 558 g~~~~a~~~~~~~~~~~p~~~ 578 (634)
|+.+.|..-|+.+-++..+-.
T Consensus 129 g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHH
Confidence 999999999999888775433
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.86 E-value=1.4 Score=40.13 Aligned_cols=215 Identities=21% Similarity=0.158 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHH
Q 036704 390 SLEMGTQLHCYIMKTGLAL-DVFVMNGLMDMYVKCGSLGSARELFNFME-----DPDVVSWSSLIVGYAQFGCGEEALKL 463 (634)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 463 (634)
....+...+.......... ...........+...+++..+...+.... ......+......+...++...+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344444444444333221 24455555666666666666666666543 23333455555566666667777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036704 464 FRRMRSSGVRPNHVTLVGVLT-ACSHVGLVEEGLQLYRIMQNEYGI--IPTRERRSCVVDLLARAGRVHEAEDFINQM-A 539 (634)
Q Consensus 464 ~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 539 (634)
+.........+. ........ .+...|+++.|...+.+.... .. ......+......+...++.++|...+... .
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777666533321 11122222 566777777777777776421 11 112233333334455667777777777776 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 540 FDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 540 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
..++ ...+..+...+...++++.|...+.......|.....+..+...+...|+.+++...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333 556667777777777777777777777777776555566666666666667777777766654
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.85 E-value=0.059 Score=52.51 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI----VVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
+...++.+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777765 555543 34777777777777777777777777775
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.84 E-value=0.84 Score=44.06 Aligned_cols=162 Identities=12% Similarity=0.099 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHhcc---cCCHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSG---VRPNHVTLVGVLTACSH---VGLVEEGLQLYRIMQNEYGIIPTRERRSCV 518 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 518 (634)
-.++-+|....+++..+++.+.+.... +.-....-...+.++.+ .|+.++|.+++..+... .-.+++.++..+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~ 223 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLL 223 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHH
Confidence 345557999999999999999998752 11122333344556666 89999999999995544 666788888877
Q ss_pred HHHHH----h-----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH----HHHHHH---HHHH-h---c-CCC
Q 036704 519 VDLLA----R-----AGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVD----VGKRAA---ENIL-K---I-DPT 576 (634)
Q Consensus 519 ~~~~~----~-----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~~-~---~-~p~ 576 (634)
...|- . ....++|++.|.+. ...|+...--.++..+...|... +..++- .... + . .-.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 76653 2 23478899999887 66676544444444444444322 222222 1111 1 1 123
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 577 NSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+-..+..++.+..-.|++++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 5556778888899999999999999999865
No 243
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=2.8 Score=43.52 Aligned_cols=108 Identities=20% Similarity=0.249 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKT 556 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 556 (634)
-+.+--+.-+...|+..+|.++-.+.+ .||...|..-+.+++..++|++-+++-+.... +.-|.-...+|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHh
Confidence 344444555666777777777655443 46777777777778888888777777666531 3345556677778
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.|+.++|..++-+.-... ..+.+|.+.|++.+|.+.
T Consensus 757 ~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred cccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHH
Confidence 888888877765532211 456677777777777655
No 244
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.71 E-value=2 Score=41.02 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=63.5
Q ss_pred HHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHH
Q 036704 415 GLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE 494 (634)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 494 (634)
..+.-+...|+...|.++..+..=|+...|...+.+++..++|++-..+... +-++.-|..++.+|.+.|+..+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344445556666666666666666666677777777777776665554321 1134566666666777777666
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
|..+..++. +..-+..|.+.|++.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 666655421 133456666677777666654443
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.14 Score=47.11 Aligned_cols=160 Identities=11% Similarity=-0.059 Sum_probs=118.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHH----HHHHHHHhcCC
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRS----CVVDLLARAGR 527 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 527 (634)
--+|+..+|...|+++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3468888888899999887 355778888888899999999988888888875 4466664444 33445568999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHHHHHH
Q 036704 528 VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT----NSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 528 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
+++|++.-++. .+.| |....++..-.+...|+++++.++..+-...-.. -..-|-..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988 5544 6778888888899999999999998875542221 1223334555677889999999999
Q ss_pred HHHHhCCCcCCCC
Q 036704 602 GSMKERGVRKVPG 614 (634)
Q Consensus 602 ~~~~~~g~~~~~~ 614 (634)
+.=.-..+.++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 9665444554443
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=1.2 Score=40.84 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=104.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
......|+..+|...|+...... .-+...-..++.+|...|+.+.|..++..+-.+ --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34566788888888888887763 224566677788888889999888888876532 1111222233455666777777
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCChHHHHHH
Q 036704 529 HEAEDFINQMAFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKI--DPTNSAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 529 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.+...+-.+....| |...-..+...+...|+.+.|.+.+-.+++. .-.+..+-..++.++.-.|.-+.+...
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~ 294 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLA 294 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHH
Confidence 77777777775555 6777778888888999999999888887774 345777888888888877755544333
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.55 E-value=1.1 Score=36.94 Aligned_cols=127 Identities=11% Similarity=0.032 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
....++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. ..+.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34556677777777888888888887776 356667777777777643 3333344332 12223344566777
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 523 ARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTH-GNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
.+.+-++++.-++.+++.. ...+..+... ++.+.|++.+++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7777777888887777532 2223333333 777777777665 235556666665544
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.37 Score=44.57 Aligned_cols=159 Identities=8% Similarity=-0.057 Sum_probs=113.4
Q ss_pred hhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHhcccCCHH
Q 036704 421 VKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTL----VGVLTACSHVGLVE 493 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~~ 493 (634)
.-.|+..+|-..++++.+ .|...+.---.+|.-.|+...-...++++... ..|+...| ..+..++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345778888888888774 45667777778899999999999999888765 24444332 34445666889999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDD------IVVWKSLLASCKTHGNVDVGKRAA 567 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~ 567 (634)
+|++.-++..+- .+.|.....++...+...|++.++.++..+-....+ ...|....-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999998887742 233666777888889999999999999987732221 223445556677789999999999
Q ss_pred HHHHh--cCCCCchhHH
Q 036704 568 ENILK--IDPTNSAALV 582 (634)
Q Consensus 568 ~~~~~--~~p~~~~~~~ 582 (634)
++-+- ...++..+..
T Consensus 271 D~ei~k~l~k~Da~a~~ 287 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARD 287 (491)
T ss_pred HHHHHHHhhccchhhhh
Confidence 87543 5555664433
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.48 E-value=0.23 Score=44.70 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=78.9
Q ss_pred CChhhHHHHHHHHHc-----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhH
Q 036704 273 PNLASWNTIIAGVAS-----CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPV 347 (634)
Q Consensus 273 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 347 (634)
.|-.+|-+.+..+.. .++++=....++.|.+-|+.-|..+|..||..+-+.. +.|...+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHHH
Confidence 566677777766644 3667777778889999999999999999987665432 2333333
Q ss_pred HhHHHhc--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccH-HHHHHHHHHH
Q 036704 348 CNAILQH--QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASL-EMGTQLHCYI 401 (634)
Q Consensus 348 ~~~ll~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 401 (634)
-..++.- +-+-+++++++|...|+.||..+-..+++++.+.+-. .+..+.+-.|
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3333322 5566888999999999999999999999999887753 3344444444
No 250
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.48 E-value=0.17 Score=40.48 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHH--------------HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQ--------------NEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--- 538 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 538 (634)
..++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555555666666555555554332 11133344444555555555555555555544443
Q ss_pred -CCCCCHHHHHHHHHH
Q 036704 539 -AFDDDIVVWKSLLAS 553 (634)
Q Consensus 539 -~~~~~~~~~~~l~~~ 553 (634)
+++-+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333334444444433
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.44 E-value=0.044 Score=31.94 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
.+..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777777653
No 252
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.43 E-value=2.8 Score=40.76 Aligned_cols=126 Identities=12% Similarity=0.060 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYG-IIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLAS 553 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 553 (634)
..|...+.+..+..-++.|..+|-++.+. + +.+++.+++++++-++ .|+...|..+|+-- .++.++......+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45666777777888899999999999987 6 6788999999998665 68899999999865 333345555667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTN--SAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
+...++-+.|..+|+..++.-.++ ..+|..++.--+.-|+...|..+=+++
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 788999999999999776533222 457777777666778776665544444
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.38 E-value=2.5 Score=39.83 Aligned_cols=128 Identities=12% Similarity=0.007 Sum_probs=61.8
Q ss_pred HcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHh-------cCCC-ChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHh
Q 036704 286 ASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCAC-------TSPL-SLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAG 357 (634)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-------~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 357 (634)
.+.|+.+.|..++.+....-...++.....+...| .+.+ +++.|...++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a--------------------- 62 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA--------------------- 62 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH---------------------
Confidence 46789999999998876543122222222222222 2233 555555554433
Q ss_pred HHHHHHHH-HHHCCCCCCH-----hHHHHHHHHhhccccHH---HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHH
Q 036704 358 ELFRLFSL-MLASQTKPDH-----ITFNDVMGACAAMASLE---MGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGS 428 (634)
Q Consensus 358 ~a~~~~~~-~~~~~~~~~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (634)
.++++. -......|+. .++..++.++...+..+ +|..+++.+...... .+.++..-+..+.+.++.+.
T Consensus 63 --~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 63 --YDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred --HHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhH
Confidence 333322 1111122322 34556666666655544 344444444333222 23333344455555666666
Q ss_pred HHHHHhcCC
Q 036704 429 ARELFNFME 437 (634)
Q Consensus 429 A~~~~~~~~ 437 (634)
+.+.+.+|.
T Consensus 140 ~~~~L~~mi 148 (278)
T PF08631_consen 140 YEEILMRMI 148 (278)
T ss_pred HHHHHHHHH
Confidence 666666654
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.38 E-value=0.18 Score=42.17 Aligned_cols=72 Identities=26% Similarity=0.319 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHH----HhCCCCChhHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQN----EYGIIPTRERR 515 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 515 (634)
....++..+...|+++.|..+.+++.... +-+...+..++.++...|+...|.+.|+.+.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556666777888888888888888764 33677888888888888888888888876643 35777776654
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.18 E-value=0.042 Score=32.07 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
.+|..++..|...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666667777777777777777777777765
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.15 E-value=2.8 Score=41.52 Aligned_cols=103 Identities=10% Similarity=0.211 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCC--HHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA-F-DDD--IVVWKSLL 551 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~--~~~~~~l~ 551 (634)
..+=..+..++.+.|+.++|++.++++.+.+.......+...|++++...+.+.++..++.+.. + -|. ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3334556677778899999999999988653332345566788899999999999999888873 1 233 33555554
Q ss_pred HHHHhcCC---------------HHHHHHHHHHHHhcCCCCc
Q 036704 552 ASCKTHGN---------------VDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 552 ~~~~~~g~---------------~~~a~~~~~~~~~~~p~~~ 578 (634)
-.+...++ -..|.+.+.++.+.+|..+
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 44444443 1346678888888887654
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=5.4 Score=42.20 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=36.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
-++..+....+++++..+.+..+.. ++..|..++..+.+.+..+.-.+...+++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3455666777788888887777533 67778888888877776655555555444
No 258
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.87 E-value=0.11 Score=44.06 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=85.5
Q ss_pred HHhcccCCHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 036704 484 TACSHVGLVEEGLQLYRIMQNEYGIIPT-----RERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKT 556 (634)
Q Consensus 484 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~ 556 (634)
.-+...|++++|..-|..+... .++. ...|..-..++.+.+.++.|++-..+. .+.|+ ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3477889999999999988853 3332 234444456777888999988877766 55553 3455555667888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH--HHHHHHHHhCC
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV--ARLMGSMKERG 608 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~~g 608 (634)
...+++|++-|+++++.+|....+-...+.+=-......++ .+++.+++..|
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999998777666666554444433333 35566777766
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.71 E-value=0.63 Score=43.62 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=97.1
Q ss_pred CHhHHHHHHHHHHHCC--CCCCHhHHHHHHHHhhccccHHHHHHHHHHHHH--hCCCCc---hhHHHHHHHHHhhcCChH
Q 036704 355 QAGELFRLFSLMLASQ--TKPDHITFNDVMGACAAMASLEMGTQLHCYIMK--TGLALD---VFVMNGLMDMYVKCGSLG 427 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~g~~~ 427 (634)
+.++++..+.....+- ..--..++..+..+.+..|.++++...--.-++ ....-+ ...|..+..++.+.-++.
T Consensus 21 ~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~ 100 (518)
T KOG1941|consen 21 QTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFH 100 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666766666655421 111224566666666777766665443211111 001101 122333333343333444
Q ss_pred HHHHHHhcCCC-----C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHhcccCCHHH
Q 036704 428 SARELFNFMED-----P---DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV---RP--NHVTLVGVLTACSHVGLVEE 494 (634)
Q Consensus 428 ~A~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~ 494 (634)
+++.+-..-.. + .-....++..++...+.++++++.|+...+--- .| ....+..+-..|.+..|+++
T Consensus 101 kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~K 180 (518)
T KOG1941|consen 101 KTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEK 180 (518)
T ss_pred hHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhH
Confidence 44443332211 1 001223344455555566666666666543210 11 13445555566666666666
Q ss_pred HHHHHHHHHH---HhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcC
Q 036704 495 GLQLYRIMQN---EYGIIPTRERRS-----CVVDLLARAGRVHEAEDFINQM-------AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 495 a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g 558 (634)
|.-+..+..+ .+++..-..-|. .+.-++...|++-.|.+.-++. +..+ .......+...|...|
T Consensus 181 al~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g 260 (518)
T KOG1941|consen 181 ALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG 260 (518)
T ss_pred HhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc
Confidence 6655444322 112221111122 1223444555555555555443 2222 2334455556666666
Q ss_pred CHHHHHHHHHHHHh
Q 036704 559 NVDVGKRAAENILK 572 (634)
Q Consensus 559 ~~~~a~~~~~~~~~ 572 (634)
+.+.|..-|+.+..
T Consensus 261 d~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 261 DLERAFRRYEQAMG 274 (518)
T ss_pred cHhHHHHHHHHHHH
Confidence 66666666665544
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.67 E-value=2.1 Score=40.37 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=62.4
Q ss_pred HHHHHhhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHHHH---
Q 036704 416 LMDMYVKCGSLGSARELFNFMED-------P--DVVSWSSLIVGYAQFGCGEEALKLFRRMRS----SGVRPNHVTL--- 479 (634)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~--- 479 (634)
+..++.-.+.++++++.|+...+ | ....+-.|...|.+..|+++|.-+..+..+ .++..-..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444455555666655554331 1 223566666666777777776655554432 1222111112
Q ss_pred --HHHHHHhcccCCHHHHHHHHHHHHHH---hCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 480 --VGVLTACSHVGLVEEGLQLYRIMQNE---YGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 480 --~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
-.+.-++...|....|.+.-++..+- .|-.+ .......+.+.|...|+.+.|+.-|++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22333455556665555555544322 13222 2334456667777777777777766654
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.65 E-value=1.3 Score=35.13 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
....-+..+..+|+-+.-.+++..+...+ .|++...-.+..+|.+.|+..++.+++.++-++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34445566666666666666666665432 556666666667777777777777766666554
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.63 E-value=0.6 Score=47.55 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh-----HHHHHHHHHH----hcCCh
Q 036704 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE-----RRSCVVDLLA----RAGRV 528 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~g~~ 528 (634)
.-...+|.-+... ++ ..+..++....-.||-+.+++.+.+..+..++.-... .|..++..+. ...+.
T Consensus 174 ~~G~G~f~L~lSl-LP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 174 YFGFGLFNLVLSL-LP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHHh-CC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 3345556666554 23 3456677777888999999999998876434433222 2233332222 35678
Q ss_pred HHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcC----CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 529 HEAEDFINQM-AFDDDIVVWKS-LLASCKTHGNVDVGKRAAENILKID----PTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 529 ~~A~~~~~~~-~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
+.|.++++.+ ..-|+...|.- -.+.+...|+.++|++.++++.... +-....+..+++.+.-+++|++|.+.+.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 8999999999 44566655543 3455778999999999999877522 2255678889999999999999999999
Q ss_pred HHHhCC
Q 036704 603 SMKERG 608 (634)
Q Consensus 603 ~~~~~g 608 (634)
++.+.+
T Consensus 330 ~L~~~s 335 (468)
T PF10300_consen 330 RLLKES 335 (468)
T ss_pred HHHhcc
Confidence 998754
No 263
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.47 E-value=0.082 Score=31.37 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
++..|+.+|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999988854
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.27 E-value=4 Score=36.91 Aligned_cols=200 Identities=20% Similarity=0.127 Sum_probs=146.4
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CCh-hhHHHHHH-
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKT-GLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDV-VSWSSLIV- 449 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~- 449 (634)
...+......+...+++..+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 466677777888888888888888777753 3334556666777777888888999999887764 222 22333333
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGV--RPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAG 526 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 526 (634)
.+...|+++.+...+++...... ......+......+...++.+.+...+...... ... ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 78899999999999999866321 123344444455567788999999999999853 333 3677788888999999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 527 RVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
+++.|...+... ...|+ ...+......+...+..+.+...+.+.....|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999988 44454 555666666666777899999999999998887
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=94.23 E-value=2.7 Score=41.49 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=97.6
Q ss_pred ChHHHHHHHhcCC---CCC---hhhHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 036704 425 SLGSARELFNFME---DPD---VVSWSSLIVGYAQF---------GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489 (634)
Q Consensus 425 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 489 (634)
..+.|..+|.+.. +.| ...|..+..++... .+..+|.++.++.++.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4677888898877 433 34555555444322 23456778888888876 45788888888888888
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI---VVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~l~~~~~~~g~~~~a~ 564 (634)
++++.|...|++.. .+.|+. ..+........-.|+.++|.+.+++. ...|.. ......+..|... ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999988 456653 34545555566789999999999994 666642 3333344455444 577788
Q ss_pred HHHHHHHh
Q 036704 565 RAAENILK 572 (634)
Q Consensus 565 ~~~~~~~~ 572 (634)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 87766444
No 266
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=2.5 Score=37.28 Aligned_cols=63 Identities=6% Similarity=-0.015 Sum_probs=38.7
Q ss_pred HHHHHHHhc-CChHHHHHHHHhC-----CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 517 CVVDLLARA-GRVHEAEDFINQM-----AFDDDIV---VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 517 ~l~~~~~~~-g~~~~A~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
.+.+.|... .+++.|+..|+.. +.+.+.. .+......-...+++.+|+.+|+++....-+++.
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 344455444 5677777777766 2222222 3333344446788999999999999886655543
No 267
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.10 E-value=13 Score=44.57 Aligned_cols=313 Identities=9% Similarity=0.013 Sum_probs=177.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhCCC--CCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH----h
Q 036704 280 TIIAGVASCSNANEAMSLFSEMGDREL--IPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL----Q 353 (634)
Q Consensus 280 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~ 353 (634)
.+..+-.+++.+.+|+..++.-..... .-...-|-.+...|...++++...-+... ...+..+++.++ .
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-----r~a~~sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-----RFADPSLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-----hhcCccHHHHHHHHHhh
Confidence 566677888999999999988311111 11223344445588888888877766543 122333444444 2
Q ss_pred cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
+++..|..-|+++.+.+ ++...+++-++......+.++.+.-..+-......+-....++.=+.+-.+.++++......
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 38889999999998875 44467788888888888888877765555443332222233344456667888888877776
Q ss_pred hcCCCCChhhHHHH-H-HHHHhc--CChHHHHHHHHHHHhCCCCCC---------HHHHHHHHHHhcccCCHHHHHHHHH
Q 036704 434 NFMEDPDVVSWSSL-I-VGYAQF--GCGEEALKLFRRMRSSGVRPN---------HVTLVGVLTACSHVGLVEEGLQLYR 500 (634)
Q Consensus 434 ~~~~~~~~~~~~~l-~-~~~~~~--~~~~~a~~~~~~m~~~~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~ 500 (634)
. +.+..+|... + ..+.+. .|.-.-....+.+++.-+.|- ...|..++....- .++-.
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~~ 1611 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELEN 1611 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHHH
Confidence 6 4555566555 2 222222 222222234444433322220 1222222222111 11111
Q ss_pred HHHHHhCCCCChhHHH-H--HHHHHHhcCChHHHHH---HHHhC----CCCC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 036704 501 IMQNEYGIIPTRERRS-C--VVDLLARAGRVHEAED---FINQM----AFDD-----DIVVWKSLLASCKTHGNVDVGKR 565 (634)
Q Consensus 501 ~~~~~~~~~~~~~~~~-~--l~~~~~~~g~~~~A~~---~~~~~----~~~~-----~~~~~~~l~~~~~~~g~~~~a~~ 565 (634)
......++.++..+.+ . ...-+.+.+....+.+ .+++. ...| -..+|...++.....|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111113333222111 1 1111112222222222 22222 1122 35689999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 566 AAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 566 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
.+-.+.+.. -+.++...+..+.+.|+...|+.++++..+.+.+
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 998888877 4667888899999999999999999998866543
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.06 E-value=1.2 Score=44.77 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=103.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCC
Q 036704 51 FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGS 130 (634)
Q Consensus 51 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 130 (634)
.....-+++++++.++.+.-.-.+.+| ....+.+++-+-+.|.++.|+++..+-. .-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 455677888888777775221111233 4457888888888999998888754322 23455668899
Q ss_pred hHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHh
Q 036704 131 LEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKS 210 (634)
Q Consensus 131 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (634)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..|+-.+.-.|+.+...++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999888765 556899999999999999999998887654 455666666778877777777666665
Q ss_pred cCCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 036704 211 EHGSHLISQNALIAMYTKFDRILDAWNVFSSI 242 (634)
Q Consensus 211 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 242 (634)
|- ++.-..++.-.|++++..+++.+.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 42 345555666678888877777654
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.05 E-value=2.9 Score=34.45 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=25.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhcc
Q 036704 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSL 93 (634)
Q Consensus 49 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (634)
.++..+...+.......+++.+... + ..++..++.++..+++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence 4555666666666666666666654 2 24555566666666544
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.03 E-value=1.4 Score=44.19 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred HHHhhcCChHHHHHHHh--cCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHH
Q 036704 418 DMYVKCGSLGSARELFN--FME-DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE 494 (634)
Q Consensus 418 ~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 494 (634)
....-.++++++.++.. ++. .-+....+.++.-+.+.|..+.|+.+.. |+.+- .....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~r---FeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDHR---FELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHH---HHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHH---hHHHHhcCCHHH
Confidence 34455678888655554 222 2224446777777778888888887632 33222 233456788888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
|.++.++ .++...|..|.+...+.|+++-|++.|++.+ -+..|.-.|...|+.+.-.++.+.+....
T Consensus 337 A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7766332 3366788889999999999999999998886 35567777888888877777776665544
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
- ++....++.-.|+.++-.+++.+.
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3 333444455568888888887643
No 271
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.98 E-value=10 Score=40.50 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=93.5
Q ss_pred HHHHHHHHhhhcCCCCCCcc--cHHHHHHHhh-ccCChhHHHHHHHHHHHcCCCCCcc-----hhhHHHHHHHccCChHH
Q 036704 62 EALVAFDFLQNNTNFRIRPS--TYADLISACS-SLRSLQLGRKVHDHILSSKCQPDAV-----LHNHILNMYGKCGSLED 133 (634)
Q Consensus 62 ~A~~~~~~~~~~~~~~~~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 133 (634)
-|+..++.+.+....+|... ++..+...+. ...+++.|+..+++.....-.++-. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45566666664323333333 3444555554 5567888888887665443222211 1224455555555444
Q ss_pred HHHHhccCCC----CCccc----hHHH-HHHHHhCCChhHHHHHHHHHHHCC---CCCChhhHHHHHHHhh--cCCCchh
Q 036704 134 ARMVFDEMPQ----RNVVS----WTAM-IAGCSQNGQENAAIELYVQMLQSG---LMPDQFTFGSIIRACS--GLCCVGL 199 (634)
Q Consensus 134 A~~~~~~~~~----~~~~~----~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~~~~~~ 199 (634)
|...+++..+ ..... +..+ +..+...+++..|.+.++.+...- ..|-...+..++.+.. +.+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 7666665432 11111 2222 222223378888888887776432 2344444555555543 4455566
Q ss_pred HhHHHHHHHHhcC---------CCChhHHHHHHHHH--HhcCChhHHHHHHhccC
Q 036704 200 GRQLHAHVIKSEH---------GSHLISQNALIAMY--TKFDRILDAWNVFSSIA 243 (634)
Q Consensus 200 a~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~ 243 (634)
+.+..+.+..... .|...++..+++.+ ...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666665543221 23445666666554 45677777776665543
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.73 E-value=4 Score=35.02 Aligned_cols=114 Identities=8% Similarity=0.015 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH--HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChHHHH
Q 036704 459 EALKLFRRMRSSGVRPNHVTLV--GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE----RRSCVVDLLARAGRVHEAE 532 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~ 532 (634)
+.....+++.....+....++. .+...+...+++++|...++.... .+.|.. +--.|.......|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455555555543222222222 234556677777777777776653 222221 1123446666777777887
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 533 DFINQMA-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 533 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
..++... ..........-...+...|+-++|+..|+++++..+
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 7777763 222344455556667777888888888887777664
No 273
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.50 E-value=0.86 Score=41.20 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=76.1
Q ss_pred HHHHHHhcCC--CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC----------
Q 036704 428 SARELFNFME--DPDVVSWSSLIVGYAQF-----GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG---------- 490 (634)
Q Consensus 428 ~A~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------- 490 (634)
..++.|..+. +.|-.+|-..+..+..+ +.++-....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455566665 56777787777776643 456667777888999999999999999998876543
Q ss_pred ------CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 491 ------LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 491 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
+-+=+++++++|... |+.||..+-..|++++.+.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 123477899999866 9999999999999999887753
No 274
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.47 E-value=12 Score=39.83 Aligned_cols=260 Identities=8% Similarity=-0.033 Sum_probs=117.2
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHH
Q 036704 282 IAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFR 361 (634)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~ 361 (634)
+..+.+.+++...+..+.. .+.+...-.....+....|+.+.|......+-..|.. ..+..-.
T Consensus 106 l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~------------~p~~cd~ 168 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS------------LPNACDK 168 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------------CChHHHH
Confidence 3445566777766653211 1334444556667777778776665555554433311 2334445
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHhhcCChHHHHHHHhcCCCCC
Q 036704 362 LFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALD-VFVMNGLMDMYVKCGSLGSARELFNFMEDPD 440 (634)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 440 (634)
+|....+.|...+...+.. +......|+...|..+...+ .++ ......++..+.. ...+...+.... ++
T Consensus 169 l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~ 238 (644)
T PRK11619 169 LFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQND---PNTVETFARTTG-PT 238 (644)
T ss_pred HHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CC
Confidence 5555555553333333333 33344555555555555443 111 1122233333322 223333322221 11
Q ss_pred hhhHHHHHHH--HHhcCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 441 VVSWSSLIVG--YAQFGCGEEALKLFRRMRSSG-VRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 441 ~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
...-..++-+ -....+.+.|..++....... +.+. ......+.......+...++...++.... ...+....
T Consensus 239 ~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~ 315 (644)
T PRK11619 239 DFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLL 315 (644)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHH
Confidence 1111111111 112345567777777654432 2222 12233333333333224445555444331 11233444
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQMA--FDDDIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
..-+....+.++++.+...+..|+ .+-...-.-=+.+++...|+.++|...|+++.
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444445556677777777777762 11122222234455455677777777777763
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.38 E-value=8.6 Score=37.72 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=87.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC--hh
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP---NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT--RE 513 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 513 (634)
....+|..+...+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|...++..... ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 445578888999999999999999999988754222 3344444566677889999999988887762 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFI-NQMAFDDDIVVWKSLLASCKTH------GNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
....+...+.. ..+.....- .......-...+..+..-+... ++.+++...|+.+.+..|....+|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 000000000 0000000112333333333344 78899999999999999998888888887
Q ss_pred HHHhc
Q 036704 587 IYASS 591 (634)
Q Consensus 587 ~~~~~ 591 (634)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76543
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.36 E-value=2.9 Score=41.42 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchhHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD---DIVVWKSLLASCKTHGNVDVGKRAAENILKI-DPTNSAALVL 583 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~ 583 (634)
..+..++.+.|+.++|++.++++ +..| ...+...|+.++...+.+.++..++.+.-+. -|+++...+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 34555666666777776666666 2222 2335566666666666666666666665443 3444444333
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.27 E-value=0.17 Score=29.36 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
+|..+...|...|++++|...|+++++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666677777777777777666663
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.22 E-value=0.16 Score=30.13 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
++..|...|...|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888999999999999998554
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.11 E-value=0.55 Score=43.25 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.++..+++.+...|+.+.+.+.++++ ...| +...|..++.+|...|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34455566666666666666666665 3333 555666666666666666666666665544
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=3.6 Score=34.44 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh-HHHHH
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVT-LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE-RRSCV 518 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l 518 (634)
...|..-+. +.+.+..++|+.-|..+.+.|...-+.. ...........|+...|...|+++... ...|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARl 136 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARL 136 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHH
Confidence 334444443 4566788999999999998875533222 223344566788999999999998865 3333221 11111
Q ss_pred --HHHHHhcCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 519 --VDLLARAGRVHEAEDFINQMAFD--D-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 519 --~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.-.+...|.++....-.+.+... | -...-..|.-+-.+.|++..|.+.|+.+..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456788888888888887322 2 234556777777889999999999988876
No 281
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.01 E-value=6.7 Score=35.45 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-AFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.+..-|.+.|.+..|..-++++ ..-| ....+-.+..+|...|-.++|...-+-+....|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3557888999999999988888 2122 234666778889999999999887666655666665
No 282
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.96 E-value=11 Score=37.66 Aligned_cols=190 Identities=11% Similarity=0.081 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
|.....+++..+...-+..-++.+-.+|.. .+-..|..++.+|... ..++-..+|+++++..+. |...-..|+.-|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 444455556666655555555555555542 4444566666666666 446666666666665322 233333333333
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 036704 487 SHVGLVEEGLQLYRIMQNEYGIIPT------RERRSCVVDLLARAGRVHEAEDFINQM----AFDDDIVVWKSLLASCKT 556 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~ 556 (634)
.+ ++.+.+..+|.++... +.|. ...|..++... ..+.+.-..+..++ +...-...+..+..-|..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33 6666666666666542 2231 12233333211 23444444444444 333334455555566666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh--------------------cCChHHHHHHHHHHH
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS--------------------SGKWEEVARLMGSMK 605 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~~ 605 (634)
..++++|++++..+++.+..+..+-..++.-+.. ..++-++..-|++.+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 6777777777777777666666665555554443 446667777777665
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.88 E-value=18 Score=40.26 Aligned_cols=107 Identities=17% Similarity=0.066 Sum_probs=54.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
...-+.....+++|.-.|+..-+. .--+.+|...|+|.+|..+..++.. +-..-..+-..|+.-+...+
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcc
Confidence 333344455666666655553221 1234566667777777776665532 11111222245666777777
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036704 527 RVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAEN 569 (634)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 569 (634)
++-+|-++..+....|.. .+..+++...+++|.++...
T Consensus 1014 kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHh
Confidence 777777777776433321 12223344445555554443
No 284
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.84 E-value=2.1 Score=41.87 Aligned_cols=89 Identities=21% Similarity=0.154 Sum_probs=40.5
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a 563 (634)
+...|+++.+.+.+..... -+.....+...++....+.|++++|...-+.| + ...++.+...........|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3445555555555554442 22233334444555555555555555555544 1 112333333333333444445555
Q ss_pred HHHHHHHHhcCCC
Q 036704 564 KRAAENILKIDPT 576 (634)
Q Consensus 564 ~~~~~~~~~~~p~ 576 (634)
.-.++++..++|+
T Consensus 411 ~~~wk~~~~~~~~ 423 (831)
T PRK15180 411 YHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccCCh
Confidence 5555555554443
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.74 E-value=3.5 Score=45.36 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=97.0
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHhcccCCHHHHHHH
Q 036704 423 CGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLV----GVLTACSHVGLVEEGLQL 498 (634)
Q Consensus 423 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~ 498 (634)
.++++.|+.-+..+. ...|.-.++.--++|-+.+|+.++ .|+...+. .....+.....+++|.-.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 356777777666654 223444445555667777777664 55655544 444555567788888887
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVV--WKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
|+..-+ ...-+.+|..+|+|.+|+.+-.++....+... -..|..-+...++.-+|-++..+.... |
T Consensus 962 Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~- 1029 (1265)
T KOG1920|consen 962 YERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P- 1029 (1265)
T ss_pred HHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H-
Confidence 776642 23456788899999999999998854444433 366777788888888888877765431 1
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 577 NSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
...+..|+++..|++|+.+-.
T Consensus 1030 -----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1030 -----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred -----HHHHHHHhhHhHHHHHHHHHH
Confidence 123334556666666665543
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.66 E-value=5.8 Score=38.96 Aligned_cols=68 Identities=12% Similarity=0.278 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 542 DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT----NSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 542 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
....+|..++..+.+.|.++.|...+.++....+. .+.+...-+..+...|+.++|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 35668999999999999999999999999885522 466777778899999999999999998887333
No 287
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.54 E-value=3.8 Score=38.73 Aligned_cols=127 Identities=11% Similarity=0.185 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh--cC----ChHHHHHHHhcCCC-------CChhhHHHHHHHHHhcCC-
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK--CG----SLGSARELFNFMED-------PDVVSWSSLIVGYAQFGC- 456 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~- 456 (634)
++....+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|++ ++-.++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455566666666666665555443222222 11 24456777777763 344455555443 2222
Q ss_pred ---hHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhcccCC--HHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 457 ---GEEALKLFRRMRSSGVRPNH--VTLVGVLTACSHVGL--VEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 457 ---~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
.+.+..+|+.+.+.|+..+. .....++..+..... ..++.++++.+.+. |+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 25567788888888877642 334444443333322 34777888888877 88887777765543
No 288
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.51 E-value=0.28 Score=45.39 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=67.3
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGN 559 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~ 559 (634)
..-|.++|.+++|+..|.... ...| +..++..-..+|.+..++..|+.-.+.. ... .-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 556788899999999988877 4455 6777777778888888888777655544 211 123345555555556778
Q ss_pred HHHHHHHHHHHHhcCCCCchhH
Q 036704 560 VDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
..+|.+-++.++++.|.+...-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHH
Confidence 8888888888889999855433
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.29 E-value=1.1 Score=37.17 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=54.0
Q ss_pred hHHHHHHHHH---HhcCChHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 513 ERRSCVVDLL---ARAGRVHEAEDFINQM-AFDDDIVVWK-SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 513 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
.+.+.|++.+ .+.++.+++..++..+ -..|...... .-...+...|++.+|+.+++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444454433 4677888888888887 4445433222 233446688888888888888888888777777777777
Q ss_pred HHhcCC
Q 036704 588 YASSGK 593 (634)
Q Consensus 588 ~~~~g~ 593 (634)
+...|+
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 766665
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.27 E-value=7.3 Score=34.07 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+|..+++-+...|+.++|..+|+....
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 445555555555555555555554443
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.00 E-value=1.1 Score=36.45 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=38.4
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 524 RAGRVHEAEDFINQM-AFDDDIVVW-KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
..++++++..+++.+ -..|+.... ..-...+...|++++|.++++.+.+..|..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 456666776666666 233322211 1122335566777777777777666666555555555555555554
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.00 E-value=2 Score=36.73 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=68.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 517 CVVDLLARAGRVHEAEDFINQMAFDD-D----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
.+...+..+|++++|+.-++..-..| | ..+-..+.+.....|.+|+|...++...+..- .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 34577889999999999999773233 3 22334566677889999999999887654322 233456679999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 036704 592 GKWEEVARLMGSMKERG 608 (634)
Q Consensus 592 g~~~~A~~~~~~~~~~g 608 (634)
|+-++|..-|++.+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999999876
No 293
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.96 E-value=0.28 Score=30.70 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=16.1
Q ss_pred cHHHHHHHhhccCChhHHHHHHHHHHHcC
Q 036704 82 TYADLISACSSLRSLQLGRKVHDHILSSK 110 (634)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (634)
++..+..++...|++++|.++|++.++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445555555555666666655555553
No 294
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.92 E-value=2.6 Score=36.17 Aligned_cols=91 Identities=13% Similarity=0.042 Sum_probs=49.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHH
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPN-----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLL 522 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 522 (634)
+-+...|++++|..-|.+.++.- ++. ...|..-..++.+.+.++.|+.-..+... +.|+- .....-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 34666677777777777766652 222 22344444455666666666665555542 33321 1222224566
Q ss_pred HhcCChHHHHHHHHhC-CCCCC
Q 036704 523 ARAGRVHEAEDFINQM-AFDDD 543 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~~~ 543 (634)
.+...+++|++=|+++ ...|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 6666777777666666 33443
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.87 E-value=7.1 Score=33.02 Aligned_cols=31 Identities=3% Similarity=-0.053 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHhcCCCCh
Q 036704 296 SLFSEMGDRELIPDGLTVRSLLCACTSPLSL 326 (634)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 326 (634)
++++.+.+.|++|+...+..++..+.+.|..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 4444445555666666666666555555543
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.87 E-value=0.34 Score=27.72 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
.++.++.+.|++++|.+.++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444455555555555555555555554
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.46 E-value=0.37 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 579 AALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.++..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998763
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.17 E-value=0.42 Score=27.68 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 579 AALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.+|..++.+|...|++++|+..+++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 47889999999999999999999998864
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.15 E-value=2.6 Score=35.02 Aligned_cols=107 Identities=21% Similarity=0.135 Sum_probs=63.2
Q ss_pred HhhcCChHHHHHHhhccc--CCCCccchHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChh
Q 036704 22 FELCMLLDQAGEVVDSFL--RRFDDIWDFDLFSS--LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQ 97 (634)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (634)
-.+.++.+++..+++.+. +|...... ++.+ +...|++.+|+++|+.+... .|....-..|+..|.....=.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~--~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELD--LFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHH--HHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCCh
Confidence 344678888888888765 44333333 4444 77888888998888888754 344444455555555554444
Q ss_pred HHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHH
Q 036704 98 LGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARM 136 (634)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 136 (634)
.-+..-+++.+.+..|+.. .++..+....+...|..
T Consensus 95 ~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 4555556666665333322 35555555555544444
No 300
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.58 E-value=27 Score=37.31 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=31.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCC
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSP 323 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 323 (634)
+...| .+|-.+.++|++++|.++..+... +.......+...+..+...
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 33444 566778899999999999865543 3455566777778888765
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.13 E-value=2 Score=39.73 Aligned_cols=78 Identities=6% Similarity=-0.003 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHH
Q 036704 217 ISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMS 296 (634)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 296 (634)
.++..++..+...|+.+.+...++++...++ -+...|..+|.+|.+.|+...|+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-------------------------~~E~~~~~lm~~y~~~g~~~~ai~ 208 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-------------------------YDEPAYLRLMEAYLVNGRQSAAIR 208 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-------------------------cchHHHHHHHHHHHHcCCchHHHH
Confidence 4667889999999999999999999888776 488899999999999999999999
Q ss_pred HHHHHhh-----CCCCCCHhHHHHHHHH
Q 036704 297 LFSEMGD-----RELIPDGLTVRSLLCA 319 (634)
Q Consensus 297 ~~~~m~~-----~g~~p~~~~~~~ll~~ 319 (634)
.|+.+.+ .|+.|...+.......
T Consensus 209 ~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 209 AYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 9998865 4888887776655544
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.08 E-value=0.54 Score=28.75 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 579 AALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+++.++.+|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888999999999988888764
No 303
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=3.4 Score=36.71 Aligned_cols=61 Identities=13% Similarity=-0.006 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+....+++...|++-++++.-..++...|.+..+|..-+.+.+..=+.++|..-|.++++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3444556667778888888888888888888888888888888877788888877777765
No 304
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.96 E-value=5.4 Score=30.07 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 530 EAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 530 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+..+-++.+ ...|++.+..+.+++|.+.+|+..|.++++.+.....+....|..+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 334444443 677999999999999999999999999999998877665556776653
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.94 E-value=3.3 Score=35.75 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchhHH---
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQMA---FDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKID--PTNSAALV--- 582 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~--- 582 (634)
..+..+.+.|.+.|+.++|.+.|.++. ..+ -...+..++......+++..+...+.++.... +.+....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345567777777777777777777771 112 23456667777777778877777777766522 22221111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHH
Q 036704 583 -LLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 583 -~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
.-+-.+...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1122345677888887776433
No 306
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.80 E-value=16 Score=33.64 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
++......|...|.+.+|.++-++++..+|-+.+.+..+...|...|+--.|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455566778999999999999999999999999999999999999999888888877765
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.79 E-value=0.53 Score=25.34 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 036704 579 AALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.+...++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677888888888888887765
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.56 E-value=11 Score=33.68 Aligned_cols=171 Identities=6% Similarity=-0.052 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 036704 412 VMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH 488 (634)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 488 (634)
.|.....+|....++++|...+....+ .+...|. ..+-++.|.-+.++|... .--...|+--...|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 445555566666666666665544331 2211111 122244555555555542 1113445555666667
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCH
Q 036704 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--------AFDDDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~ 560 (634)
.|.++.|-..+++..+. .+.-++++|+++|++. ..+--...+......+.+...+
T Consensus 104 ~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77776666666654431 1234455555555554 1111223445555667777788
Q ss_pred HHHHHHHHHHHh------cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 561 DVGKRAAENILK------IDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 561 ~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++|-..+.+-.. ..|..-..+...+-++....++..|...++.--+.+
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 777766665432 223334456677777778889999999987665544
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.52 E-value=5 Score=34.59 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQLYRIMQN 504 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 504 (634)
.+..+..-|++.|+.+.|.+.|.++.+....|. ...+..+++.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777777666544443 33455566666666777776666666554
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.50 E-value=23 Score=35.03 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=66.7
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHH
Q 036704 91 SSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIE 167 (634)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 167 (634)
...|++-.|-+-+...+..- +-++.........+...|+++.+...+..... ....+-.++++...+.|+++.|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34566555544443333331 22222222233334566778877777655442 445566777777777788888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCC
Q 036704 168 LYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSH 215 (634)
Q Consensus 168 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 215 (634)
+-+.|....+. +...........-..|-++++...|+++...+.+.+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 77777765542 222222222222345566677777776665544433
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.26 E-value=12 Score=31.47 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=73.8
Q ss_pred HhhcCChHHHHHHHhcCCCCChhhHHHHH-----HHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHhcccCC
Q 036704 420 YVKCGSLGSARELFNFMEDPDVVSWSSLI-----VGYAQFGCGEEALKLFRRMRSSGVRPNHV-TLVGV--LTACSHVGL 491 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l--~~~~~~~g~ 491 (634)
+.+.+..++|+.-|..+.+.+...|..|. ......|+...|...|+++-.-...|-.. -...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45667788888888888776666665543 23566788888888888876654334322 11122 223456777
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 492 VEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 492 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
++......+-+... +.+-....-..|.-+-.+.|++..|.+.|..+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 77777776666533 33333444456666667888888888888877
No 312
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.23 E-value=1.2 Score=37.60 Aligned_cols=33 Identities=33% Similarity=0.407 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 560 VDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+++|+.-|++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 456666677777788888888888888877654
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.01 E-value=0.98 Score=27.54 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888888775
No 314
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.88 E-value=21 Score=33.63 Aligned_cols=98 Identities=7% Similarity=-0.038 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHcCCChh---HHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh-----
Q 036704 276 ASWNTIIAGVASCSNAN---EAMSLFSEMGDRELIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP----- 346 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----- 346 (634)
.+...++.+|...+..+ +|.++++.+... -|+ +..+..-+..+.+.++.+.+.+++..|+..-..++..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 45677888888887754 466666666544 233 3445455666666888888888888887754322221
Q ss_pred -HHhHHHhcCHhHHHHHHHHHHHCCCCCCH
Q 036704 347 -VCNAILQHQAGELFRLFSLMLASQTKPDH 375 (634)
Q Consensus 347 -~~~~ll~~~~~~a~~~~~~~~~~~~~~~~ 375 (634)
.+..+.......+...+..+....+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 11222233445555555555544444433
No 315
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=17 Score=32.36 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=27.5
Q ss_pred HhcCChHHHHHHHHhC---CCCCCHHHH---HHHHH--HH-HhcCCHHHHHHHHHHHHhcCCC
Q 036704 523 ARAGRVHEAEDFINQM---AFDDDIVVW---KSLLA--SC-KTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~---~~~~~~~~~---~~l~~--~~-~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
...+++.+|+++|++. ....+..-| ..++. .| .-..|.-.+...+++..+.+|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3456677777777766 111111111 11111 12 2235666667777777777776
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.66 E-value=1.1 Score=25.90 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 579 AALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999998876
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.19 E-value=3.1 Score=30.92 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 530 EAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 530 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
++.+-++.+ ...|++.+..+.+++|.+.+|+..|.++++.+......+...|..+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 344444444 67799999999999999999999999999988866654555566554
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.11 E-value=2.3 Score=27.86 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 547 WKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 547 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
+-.+.-++.+.|++++|.+..+.+++..|++..+....
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 34566778899999999999999999999988765543
No 319
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.92 E-value=25 Score=33.36 Aligned_cols=146 Identities=10% Similarity=0.161 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--ccC----CHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCh
Q 036704 457 GEEALKLFRRMRSSGVRPNHVTLVGVLTACS--HVG----LVEEGLQLYRIMQNEYGIIPT--RERRSCVVDLLARAGRV 528 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g----~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 528 (634)
+++.+.+++.|.+.|++-+..+|.+...... ... ...+|..+|+.|++++.+-.. -..+..++. ...++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA--~~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA--MTSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh--cccccH
Confidence 3456778888999998877766654322222 222 356788899999987655433 333444432 244444
Q ss_pred HH----HHHHHHhC---CCCC-CHHHHHHHHHHHHh-cCC--HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChHH
Q 036704 529 HE----AEDFINQM---AFDD-DIVVWKSLLASCKT-HGN--VDVGKRAAENILKIDPT-NSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 529 ~~----A~~~~~~~---~~~~-~~~~~~~l~~~~~~-~g~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~ 596 (634)
++ ++.+|+.+ ++.. +..-+.+-+-++.. ..+ ..++.++++.+.+..-+ ....|..++-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 33 44444444 4443 33333333333322 222 34677777777764433 23335555433323333324
Q ss_pred HHHHHHHH
Q 036704 597 VARLMGSM 604 (634)
Q Consensus 597 A~~~~~~~ 604 (634)
..+-+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444333
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.91 E-value=2.3 Score=37.03 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA---ALVLLC 585 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~ 585 (634)
+.+.-+..+.+.+.+.+|+...+.- +.+| |...-..+++.++-.|++++|..-++-+-++.|.... .|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 3445567778888999999887755 6666 5667778888899999999999999998888887543 444444
No 321
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.86 E-value=18 Score=31.75 Aligned_cols=179 Identities=11% Similarity=-0.001 Sum_probs=101.0
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh-hHHHHHHH--HHhcCChHHHHHHH
Q 036704 388 MASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV-SWSSLIVG--YAQFGCGEEALKLF 464 (634)
Q Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~--~~~~~~~~~a~~~~ 464 (634)
.|-+..|.-=|.+.....+. -+.+||-+.-.+...|+++.|.+.|+...+.|+. -|..+=++ +--.|++..|.+=+
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 34444444444444433322 3567888888888999999999999998875543 33333222 33458888888877
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhCCCCC
Q 036704 465 RRMRSSGVR-PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSC-VVDLLARAGRVHEAEDFINQMAFDD 542 (634)
Q Consensus 465 ~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 542 (634)
...-+.+.. |-...|..+. ...-++.+|..-+.+-.+ +. |..-|.. ++..|.-.=..+.+.+-...-....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~--~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE--KS--DKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH--hc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 776665322 2222233322 233467777654433222 33 3333332 3333332222233332222221111
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 543 ------DIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 543 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
-..++--+.+-+...|+.++|..+|+-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 13477788888999999999999999988754
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.86 E-value=1.1 Score=27.91 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
..++.+|.+.|+.+.|.++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357888888888888888888888654
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.75 E-value=0.78 Score=26.16 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999864
No 324
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.47 E-value=2.5 Score=37.39 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=51.4
Q ss_pred cCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDDDI-VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
..++..|+..|.+. .+.|+. ..|+.=+..+.+..+++.+..--.+++++.|+.......++..+.....+.+|...+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34555566555554 455554 3445555556666777777777777777777777777777777777777777777766
Q ss_pred HH
Q 036704 603 SM 604 (634)
Q Consensus 603 ~~ 604 (634)
+.
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 66
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.27 E-value=2.2 Score=35.36 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=23.4
Q ss_pred HHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHh
Q 036704 189 RACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFS 240 (634)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 240 (634)
..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444444433444444555555555544444444444
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.12 E-value=45 Score=35.48 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCC----CChhhHHHHHHHHHc
Q 036704 217 ISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMES----PNLASWNTIIAGVAS 287 (634)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~ 287 (634)
.+...+|..+...|++++|-...-.|...+..-|-..+..+...+.-..++.-+|. .+...|..++..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 34566778888888899988888888888877777777777777777777777774 245678877777776
No 327
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.70 E-value=2.7 Score=31.35 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT--NSAALVLLCNIYASSGK 593 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 593 (634)
|......+...+...|++++|++.+-.+++.+|. +..+-..++.++.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4455555566666666666666666666655443 34555555555555554
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.60 E-value=5.8 Score=35.44 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHhc--CCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 544 IVVWKSLLASCKTHGNVD-------VGKRAAENILKI--DPT----NSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~--~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
...+..+.+.|...|+.+ .|.+.|+++.+. .|. ...+...++.+..+.|++++|.+.|.++...+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 346666777777777754 444455555442 222 3467778888889999999999999999876544
Q ss_pred CC
Q 036704 611 KV 612 (634)
Q Consensus 611 ~~ 612 (634)
..
T Consensus 198 s~ 199 (214)
T PF09986_consen 198 SK 199 (214)
T ss_pred CC
Confidence 33
No 329
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.12 E-value=20 Score=30.39 Aligned_cols=132 Identities=10% Similarity=0.059 Sum_probs=68.4
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC--ChHHHHHHHhcCC
Q 036704 360 FRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG--SLGSARELFNFME 437 (634)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 437 (634)
.+.++.+.+.+++|+...+..++..+.+.|.+....+ +...++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556666667777777778888888877777654433 334444444443333322221111 1233444444433
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 438 DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 438 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23445566677777777777776664322 11122334555555555544444444333
No 330
>PRK12798 chemotaxis protein; Reviewed
Probab=86.11 E-value=36 Score=33.41 Aligned_cols=182 Identities=18% Similarity=0.221 Sum_probs=120.3
Q ss_pred cCChHHHHHHHhcCCC----CChhhHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhcccCCHH
Q 036704 423 CGSLGSARELFNFMED----PDVVSWSSLIVG-YAQFGCGEEALKLFRRMRSSGVRPN----HVTLVGVLTACSHVGLVE 493 (634)
Q Consensus 423 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~ 493 (634)
.|+..+|.+.+..+.. +....|-.|+.+ .....++..|+++|+..+-. -|- ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5899999999998873 455567777766 44567899999999987654 342 345555666678899999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRS-CVVDLLARAG---RVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAEN 569 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 569 (634)
++..+-......+...|-..-|. .++..+.+.+ ..+.-.+++..|.-.--...|..+.+.-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99988888887766666444333 2333343333 3444445555554333456888899999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHH-----HhcCChHHHHHHHHHHHhC
Q 036704 570 ILKIDPTNSAALVLLCNIY-----ASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 570 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~ 607 (634)
+..+... ...-...+..| .-..++++|.+.++.+-..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 9886533 22222222233 2345577777766655443
No 331
>PRK10941 hypothetical protein; Provisional
Probab=86.04 E-value=4.3 Score=37.64 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 548 KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.+-.+|.+.++++.|....+.++...|+++.-+...+-+|.+.|-+..|..=++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555554443
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.00 E-value=5.2 Score=34.74 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=42.9
Q ss_pred hHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHH
Q 036704 528 VHEAEDFINQMAFDD---DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT----NSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A 597 (634)
-++|.+.|-.+...| ++.....++. |....|.++++.++-++++..+. |+.++..|+.++.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 355666666662222 3333334443 33456777888888877774322 577788888888888887776
No 333
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.87 E-value=0.86 Score=37.81 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=57.8
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhH
Q 036704 85 DLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENA 164 (634)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 164 (634)
.+++.+.+.+.+.....+++.+...+...+...++.++..|++.++.+...++++.... .-...++..|-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888776566678888888888888777888887774332 333455666666666666
Q ss_pred HHHHHHHH
Q 036704 165 AIELYVQM 172 (634)
Q Consensus 165 a~~~~~~m 172 (634)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66665543
No 334
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.84 E-value=6.9 Score=36.28 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=74.8
Q ss_pred HcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC-CCc-----cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 036704 108 SSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ-RNV-----VSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQ 181 (634)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 181 (634)
..|.+.+..+...++..-....+++.+...+-++.. |+. .+-.+.++.+.+ -++++++.++..=++.|+.||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 345556666666667666667788888877766553 211 122233444433 4677999999988999999999
Q ss_pred hhHHHHHHHhhcCCCchhHhHHHHHHHHhc
Q 036704 182 FTFGSIIRACSGLCCVGLGRQLHAHVIKSE 211 (634)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (634)
.+++.+|+.+.+.++...|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877654
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.61 E-value=3 Score=38.94 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=62.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
.+.|.++|.+++|+..|.+-... .| |++++..-..+|.+...+..|..-....... -...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 45699999999999999988775 56 8889988889999988888777766655532 224556666554
Q ss_pred -------ChHHHHHHHHhC-CCCCCHH
Q 036704 527 -------RVHEAEDFINQM-AFDDDIV 545 (634)
Q Consensus 527 -------~~~~A~~~~~~~-~~~~~~~ 545 (634)
+..+|.+-++.. ...|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 555555555554 6667643
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.29 E-value=13 Score=32.67 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=22.2
Q ss_pred HHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 484 TACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 484 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
..+.+.+...+++...+.-.+. -+.+...-..++..|+-.|+|++|..-++-
T Consensus 9 seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3344444444444444443321 122333344444555555555555444443
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.22 E-value=1.7 Score=24.00 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 581 LVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+..++.++...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444445555555555444443
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.15 E-value=19 Score=29.56 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=26.7
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC
Q 036704 92 SLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ 143 (634)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 143 (634)
...+++.+..+++.|.-.. |-....-..-...+...|+|.+|.++|+++.+
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3556666666666665442 11222222233345566666666666666654
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.97 E-value=13 Score=34.65 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=75.3
Q ss_pred CCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhC---CCCCh--hHHhHHH-hcCHhHHHHHHHHHHHCCCCCCHhH
Q 036704 304 RELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKG---FYSNV--PVCNAIL-QHQAGELFRLFSLMLASQTKPDHIT 377 (634)
Q Consensus 304 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~ll-~~~~~~a~~~~~~~~~~~~~~~~~~ 377 (634)
.|......+...++..-.....++.+...+-.+.... ..++. .++-.++ +-++.+++.++..=.+-|+-||..+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 4555566667777766666777787777665554322 22222 2333333 4488999999999999999999999
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhC
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTG 405 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 405 (634)
++.+|..+.+.+++.+|.++...|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887554
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.47 E-value=66 Score=34.96 Aligned_cols=51 Identities=25% Similarity=0.134 Sum_probs=26.5
Q ss_pred hcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 453 QFGCGEEALKLFRRMRSSG----VRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 453 ~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
..|+++.|.++.+.....= ..+....+..+..+..-.|++++|..+.....
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 3456666666655544331 12233444455555555666666666655544
No 341
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.44 E-value=0.95 Score=26.34 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=17.3
Q ss_pred HHHHHcCCCCCcchhhHHHHHHHccCChHHHH
Q 036704 104 DHILSSKCQPDAVLHNHILNMYGKCGSLEDAR 135 (634)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 135 (634)
++.++.. |-++..|..+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344443 445566666666666666666654
No 342
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.42 E-value=12 Score=28.16 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=59.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHH
Q 036704 95 SLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQ 174 (634)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 174 (634)
..++|..+-+.+...+. ....+-..-+..+...|++++|..+.+...-||...|-+|-. .+.|-.++...-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 35667777776665442 133333344556788999999999999988899888877654 366777777777777777
Q ss_pred CCCCCChhhHH
Q 036704 175 SGLMPDQFTFG 185 (634)
Q Consensus 175 ~g~~p~~~~~~ 185 (634)
+| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 76 35555553
No 343
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.27 E-value=10 Score=34.99 Aligned_cols=115 Identities=13% Similarity=0.156 Sum_probs=83.3
Q ss_pred cCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhc--cCChhHHHHHHHHHHHc-CCCCCcchhhHHHHHHHccCChHH
Q 036704 57 QNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSS--LRSLQLGRKVHDHILSS-KCQPDAVLHNHILNMYGKCGSLED 133 (634)
Q Consensus 57 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 133 (634)
+.-..+|+.+|+.......+-.|..+...+++.... ........++.+-+... +-.++..+...++..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 445678888888544322466788888888877765 22344455555555543 347788888899999999999999
Q ss_pred HHHHhccCC-----CCCccchHHHHHHHHhCCChhHHHHHHHH
Q 036704 134 ARMVFDEMP-----QRNVVSWTAMIAGCSQNGQENAAIELYVQ 171 (634)
Q Consensus 134 A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 171 (634)
-.++++... ..|...|..+|......|+..-...+.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999998754 35778999999999999998766655543
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.54 E-value=17 Score=27.51 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 448 IVGYAQFGCGE--EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 448 ~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
-..|....+.+ +..+-++.+....+.|++......+.+|.+.+++..|.++++-++.+-+ +....|..++.
T Consensus 15 y~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 15 YEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 33444433333 5666677777778889999999999999999999999999998887533 33336766654
No 345
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.09 E-value=29 Score=35.62 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=46.6
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 036704 422 KCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRI 501 (634)
Q Consensus 422 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 501 (634)
..|+++.|..++..+.++ .-+.++.-+.+.|-.++|+++ .+|+.--. ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHh
Confidence 345565555555554422 222333344445555555443 23322211 112345666666655444
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 502 MQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.. +..-|..|.++....|++..|.+.|.+.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 32 2334666666666666666666666655
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.74 E-value=1.1 Score=24.10 Aligned_cols=21 Identities=14% Similarity=-0.084 Sum_probs=14.2
Q ss_pred cchhhHHhhcCChHHHHHHhh
Q 036704 16 CEYWDAFELCMLLDQAGEVVD 36 (634)
Q Consensus 16 ~~l~~~~~~~g~~~~A~~~~~ 36 (634)
..++.++...|++++|.+.++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 456667777777777777654
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.63 E-value=69 Score=33.79 Aligned_cols=15 Identities=20% Similarity=0.045 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhC
Q 036704 391 LEMGTQLHCYIMKTG 405 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~ 405 (634)
...+..+++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 455666666666655
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.34 E-value=43 Score=31.19 Aligned_cols=119 Identities=10% Similarity=0.118 Sum_probs=77.1
Q ss_pred HhHHHh-c-CHhHHHHHHHHHHH-CCCCCCHhHHHHHHHHhhc-cc-cHHHHHHHHHHHH-HhCCCCchhHHHHHHHHHh
Q 036704 348 CNAILQ-H-QAGELFRLFSLMLA-SQTKPDHITFNDVMGACAA-MA-SLEMGTQLHCYIM-KTGLALDVFVMNGLMDMYV 421 (634)
Q Consensus 348 ~~~ll~-~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 421 (634)
|..+++ + ...+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+. ..+-.++..+...++..++
T Consensus 134 Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~ 213 (292)
T PF13929_consen 134 YWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILA 213 (292)
T ss_pred HHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHH
Confidence 444442 2 66777777774433 3355667777777776655 22 3333444444444 3345667777788888888
Q ss_pred hcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 422 KCGSLGSARELFNFME-----DPDVVSWSSLIVGYAQFGCGEEALKLFRR 466 (634)
Q Consensus 422 ~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 466 (634)
..+++..-.++++... ..|...|..++......||..-...+.++
T Consensus 214 ~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 214 ESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred hcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8888888888888654 35677888888888888886655544443
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.88 E-value=12 Score=31.87 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=33.1
Q ss_pred CCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 539 AFDDD-IVVWKSLLASCKTHG-----------NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 539 ~~~~~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+.|+ ..++..+..+|...+ -+++|.+.|+++...+|.+......|-.+ .+|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHH
Confidence 44454 345555555554333 25566666777777888776555555322 245555555555
Q ss_pred CCC
Q 036704 607 RGV 609 (634)
Q Consensus 607 ~g~ 609 (634)
++.
T Consensus 136 ~~~ 138 (186)
T PF06552_consen 136 QGL 138 (186)
T ss_dssp SSS
T ss_pred HHh
Confidence 443
No 350
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.69 E-value=6.2 Score=39.92 Aligned_cols=99 Identities=18% Similarity=0.110 Sum_probs=70.2
Q ss_pred ccCCHHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 036704 488 HVGLVEEGLQLYRIMQNEYGIIP--TRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 488 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a 563 (634)
..|+...|.+.+..+.. ..| .......|...+.+.|....|-.++.+. . ....+.++..+.+++....+.++|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 35788888888777663 333 2233445667777777777888877665 2 233566777888888888899999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 564 KRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
++.++.+++..|+++..-+.|..+-|
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999998888887777655544
No 351
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.68 E-value=68 Score=33.08 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHH-ccCChHHHHHH
Q 036704 59 LYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYG-KCGSLEDARMV 137 (634)
Q Consensus 59 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~ 137 (634)
..+.+...+..+... +|.----|......=.+.|..+.+..+|++-+. +++.+...|...+..+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 345555566666643 222222334444445667778888888888765 45667777766665554 34666666777
Q ss_pred hccCCC------CCccchHHHHHHHHhCCChhHHHHHHHHHHH
Q 036704 138 FDEMPQ------RNVVSWTAMIAGCSQNGQENAAIELYVQMLQ 174 (634)
Q Consensus 138 ~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 174 (634)
|+.... .....|...|.--...+++.....++++..+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 766542 3455677777777778888888888888876
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.98 E-value=66 Score=32.50 Aligned_cols=176 Identities=13% Similarity=0.067 Sum_probs=121.2
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHH
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLI 448 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 448 (634)
..|.....+++..+.....+.-++.+..+|...|- +...+..++..|... .-++-..+|+++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 55667777888888888888888888888887663 566777788888877 56677778886654 3444444555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPN------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
.-|-+ ++.+.+..+|.++...- -|. ...|.-+... -..+.+....+..++.+..|...-...+..+..-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55555 77888888888877653 221 1234444432 13577788888888888777777777777788888
Q ss_pred HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 036704 523 ARAGRVHEAEDFINQM--AFDDDIVVWKSLLASC 554 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 554 (634)
....++.+|++++..+ -...|...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 8999999999999876 2223444444555444
No 353
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.62 E-value=23 Score=28.53 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=51.2
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 509 IPTRERRSCVVDLLARAGR---VHEAEDFINQM-A-FDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
.++..+--.+..++.+..+ ..+.+.+++++ + ..| .......|.-++.+.++++.++++.+..++..|++..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5556666667777776654 45566677776 3 344 234556677778899999999999999988888877543
No 354
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.56 E-value=22 Score=26.67 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
|.=++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+-+ .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 3445666677777778889999999999999999999999999988875423 2444565554
No 355
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.36 E-value=12 Score=38.11 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=10.2
Q ss_pred HHHhcCChhHHHHHHhcc
Q 036704 225 MYTKFDRILDAWNVFSSI 242 (634)
Q Consensus 225 ~~~~~g~~~~A~~~~~~~ 242 (634)
+|...|+++++.+++.+-
T Consensus 730 ~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 444556666666665543
No 356
>PRK10941 hypothetical protein; Provisional
Probab=80.36 E-value=12 Score=34.65 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
+.+-.+|.+.++++.|+.+.+.+ ...| ++.-+..-+-.|.+.|.+..|..-++..++..|+++.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34667888999999999999988 5555 56678878888999999999999999999999998865443
No 357
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.83 E-value=1.3 Score=41.38 Aligned_cols=85 Identities=12% Similarity=0.175 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.|.+++|++.+... ...| ....+..-..++.+.++...|++-+..+++++|++..-|-.-..+..-.|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34444444444443 2222 222333333444445555555555555555555555555555555555555555555555
Q ss_pred HHHhCCC
Q 036704 603 SMKERGV 609 (634)
Q Consensus 603 ~~~~~g~ 609 (634)
...+.++
T Consensus 207 ~a~kld~ 213 (377)
T KOG1308|consen 207 LACKLDY 213 (377)
T ss_pred HHHhccc
Confidence 5544444
No 358
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.34 E-value=4.6 Score=22.64 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 558 GNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 558 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999888888888877653
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.28 E-value=13 Score=32.36 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=19.7
Q ss_pred cCChhHHHHHHHHHHHcC---CCCCcchhhHHHHHHHccCChHHH
Q 036704 93 LRSLQLGRKVHDHILSSK---CQPDAVLHNHILNMYGKCGSLEDA 134 (634)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 134 (634)
..+.+++.+++...++.. -.+|+..+.+|++.+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444555555554444331 133444555555555555554444
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.17 E-value=8 Score=27.62 Aligned_cols=45 Identities=11% Similarity=0.092 Sum_probs=34.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhH---HHHHHHHHhcCChHHHHHH
Q 036704 556 THGNVDVGKRAAENILKIDPTNSAAL---VLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~ 600 (634)
...+.++|+..++++++..++.+.-+ -.++.+|+..|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999998777655544 4556678888988888776
No 361
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.46 E-value=1e+02 Score=33.09 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=25.6
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhH
Q 036704 117 LHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENA 164 (634)
Q Consensus 117 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 164 (634)
.....+..+.-.|++++|-...-.|...+..-|-.-+..+...++...
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 444455555555666666555555555555555555555555544443
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.42 E-value=4.8 Score=21.96 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
..+..+...+...|+++.|...+++.++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567788889999999999999999988776
No 363
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.21 E-value=1.1e+02 Score=32.34 Aligned_cols=212 Identities=14% Similarity=0.119 Sum_probs=119.7
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh-cCChHHHHHHHhcCCC-CChhhHHHHHHHHHh----cCChHHHHHH
Q 036704 390 SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK-CGSLGSARELFNFMED-PDVVSWSSLIVGYAQ----FGCGEEALKL 463 (634)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 463 (634)
+.+.|..++....+.|.+ +....-..+..... ..+...|.++|....+ -.+..+-.+..+|.. ..+...|..+
T Consensus 308 d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 566677777777777654 33322222222222 2456778888877653 334444333333332 3467888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH---Hh----cCChHHHHHHHH
Q 036704 464 FRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL---AR----AGRVHEAEDFIN 536 (634)
Q Consensus 464 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~ 536 (634)
+.+..+.| .|...--...+..+.. +.++.+.-.+..+... |.......-..+.... .. ..+.+.+...+.
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 88888887 4443333333344444 6666666665555543 4332211111111111 11 235667777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-C--ChHHHHHHHHHHHhCC
Q 036704 537 QMAFDDDIVVWKSLLASCKTH----GNVDVGKRAAENILKIDPTNSAALVLLCNIYASS-G--KWEEVARLMGSMKERG 608 (634)
Q Consensus 537 ~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~g 608 (634)
+...+.+......+...|..- .+++.|...|..+.... +.....++..+... | .+..|.++++...+.+
T Consensus 464 ~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 464 RAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 776666777777777665432 35788888888877766 66777777766543 2 2567888887776543
No 364
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.09 E-value=24 Score=28.37 Aligned_cols=42 Identities=5% Similarity=0.045 Sum_probs=32.4
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 562 VGKRAAENILK--IDPTNSAALVLLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 562 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (634)
.+.++|+.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788887776 5556777888888888888899888888864
No 365
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=76.03 E-value=59 Score=31.58 Aligned_cols=213 Identities=14% Similarity=0.151 Sum_probs=125.4
Q ss_pred cccHHHHHHHHHHHH-----HhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 036704 388 MASLEMGTQLHCYIM-----KTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALK 462 (634)
Q Consensus 388 ~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 462 (634)
.++.+.|.+-+-... ..+...+..+...++..|...++|+.--+. +....-++|+...|..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~--------------i~~Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQ--------------IRLLSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHhhHHHHHHH
Confidence 556666655443333 223334455566666667776666543221 1222335666666654
Q ss_pred HH--HHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 463 LF--RRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP---TRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 463 ~~--~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
.. +-|.-..-.||..|-..++..+ +...+. .+-. ....-..|...+...|+.++|..++.+
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tL-------------r~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~e 156 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETL-------------RTVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCE 156 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHH-------------HHhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 32 2232222345555544444332 222211 1111 123334577888899999999999998
Q ss_pred CCCCC------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------hhHHHHHHHHHhcCChHHHHHHHH
Q 036704 538 MAFDD------D--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS-------AALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 538 ~~~~~------~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.++.. . .....--++.|...+|+-.|--+-+++.....+++ ..|..++....+.+.+=++-+.++
T Consensus 157 l~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yr 236 (439)
T KOG1498|consen 157 LQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYR 236 (439)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 84332 1 11122335667888999999999888876433322 367778888888899999999999
Q ss_pred HHHhCCCcCCCCccEEEeCCeEeeec
Q 036704 603 SMKERGVRKVPGQSWIEIQTKIHASG 628 (634)
Q Consensus 603 ~~~~~g~~~~~~~~~~~~~~~~~~~~ 628 (634)
.+-+.|-.++....|+..+..+--++
T Consensus 237 aiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 237 AIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HHhcccccccChhhhhhhhhhheeEE
Confidence 99887766554447888777765544
No 366
>PF13934 ELYS: Nuclear pore complex assembly
Probab=75.64 E-value=14 Score=33.32 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=60.0
Q ss_pred HHHHH--HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Q 036704 49 DLFSS--LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYG 126 (634)
Q Consensus 49 ~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (634)
..+++ +...+++++|++.+..- .+. +..-.-+++++...|+...|..++..+... ..+......++.. .
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~p----s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSHP----SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCCC----CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-H
Confidence 45555 55667777777776322 122 222235677777778888888887765211 1122223333334 5
Q ss_pred ccCChHHHHHHhccCCCCC-ccchHHHHHHHHhCC
Q 036704 127 KCGSLEDARMVFDEMPQRN-VVSWTAMIAGCSQNG 160 (634)
Q Consensus 127 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g 160 (634)
.++.+.+|...-+...++. ...+..++..+....
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 5688888888877766532 346777777666544
No 367
>PF13934 ELYS: Nuclear pore complex assembly
Probab=75.16 E-value=64 Score=29.19 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=14.4
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036704 523 ARAGRVHEAEDFINQMAFDDDIVVWKSLLASCK 555 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 555 (634)
..++.+.||..+-+.....-....+..++..+.
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 344555555555555432212334444444433
No 368
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=75.06 E-value=99 Score=31.28 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHH-HHccCChHHHHHHhc
Q 036704 61 NEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNM-YGKCGSLEDARMVFD 139 (634)
Q Consensus 61 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~ 139 (634)
.+...+|...... ++.|+..+..-+..|-+.+.+.+...+|.+|+..+ |.++..|-.-... |-...+++.|..+|.
T Consensus 88 ~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 3455666666654 66688888888887777777888889999988765 3344444332222 334445888888887
Q ss_pred cCCC
Q 036704 140 EMPQ 143 (634)
Q Consensus 140 ~~~~ 143 (634)
.-.+
T Consensus 165 rgLR 168 (568)
T KOG2396|consen 165 RGLR 168 (568)
T ss_pred HHhh
Confidence 6654
No 369
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.50 E-value=41 Score=34.88 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=70.4
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 522 LARAGRVHEAEDFINQM-AFDD-D------IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
..+..++..+.++|..- ..-| | ....+.+.-+|....+.|.|.++++++-+.+|.++..-.....+....|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34567788888887653 2222 1 33566777788899999999999999999999999888888889999999
Q ss_pred hHHHHHHHHHHHhCCCc
Q 036704 594 WEEVARLMGSMKERGVR 610 (634)
Q Consensus 594 ~~~A~~~~~~~~~~g~~ 610 (634)
-++|+..+...+..-..
T Consensus 444 Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 444 SEEALTCLQKIKSSEDE 460 (872)
T ss_pred hHHHHHHHHHHHhhhcc
Confidence 99999999888765443
No 370
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.24 E-value=80 Score=29.88 Aligned_cols=82 Identities=16% Similarity=0.017 Sum_probs=39.2
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHHHHHHHHh----cCCh
Q 036704 387 AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSSLIVGYAQ----FGCG 457 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~ 457 (634)
..+++..+...+......+.. .....+...|.. ..+...|...|....+ ........|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 455666666666666553322 223333333322 2345556666654443 222333334444443 2255
Q ss_pred HHHHHHHHHHHhCC
Q 036704 458 EEALKLFRRMRSSG 471 (634)
Q Consensus 458 ~~a~~~~~~m~~~~ 471 (634)
.+|..++++..+.|
T Consensus 130 ~~A~~~~~~Aa~~g 143 (292)
T COG0790 130 VKALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHHHcC
Confidence 56666666666555
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.06 E-value=18 Score=28.52 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 538 MAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 538 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
+...|++.+....+++|.+.+|+..|.++++.+....+.....|-.++
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 377899999999999999999999999999999887776666666554
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.49 E-value=12 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=34.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC----C-----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 555 KTHGNVDVGKRAAENILKIDPT----N-----SAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+.||+.+|.+.+.+....... . ..+...++......|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4667777777777666652221 1 23444566777788888888888888765
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.20 E-value=38 Score=25.64 Aligned_cols=86 Identities=22% Similarity=0.270 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSS 470 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 470 (634)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+.+...+-+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45555555555443321 122222224567788899999999888888888888776543 556667777777777777
Q ss_pred CCCCCHHHHH
Q 036704 471 GVRPNHVTLV 480 (634)
Q Consensus 471 ~~~p~~~~~~ 480 (634)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 55555543
No 374
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=72.93 E-value=30 Score=32.46 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCCCchhH
Q 036704 562 VGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 562 ~a~~~~~~~~~~~p~~~~~~ 581 (634)
.|.+.+.++.+.+|.-|..+
T Consensus 380 ~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHH
Confidence 56777778888888765533
No 375
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.68 E-value=1e+02 Score=30.35 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 036704 548 KSLLASCKTHGNVDVGKRAAENILKIDPT-NSAALVLLCNIYA-SSGKWEEVARLMGSMKE 606 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 606 (634)
...+..+.+.|-+..|.++.+-++.++|. ||..-...++.|+ +.++++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 33456678899999999999999999998 8877777777765 67788877887776654
No 376
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.49 E-value=2.5e+02 Score=34.79 Aligned_cols=150 Identities=7% Similarity=-0.070 Sum_probs=88.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHH----HHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHH
Q 036704 151 AMIAGCSQNGQENAAIELYVQM----LQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMY 226 (634)
Q Consensus 151 ~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 226 (634)
++..+-.+.+.+.+|.-.++.- ++.. ....-|-.+...|+..+++|....+...... .| . ....|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~--s-l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP--S-LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc--c-HHHHHHHH
Confidence 4445666788899999988883 2221 1223344555588999999988877664111 11 1 22345566
Q ss_pred HhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 036704 227 TKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDREL 306 (634)
Q Consensus 227 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 306 (634)
...|++..|...|+.+.+.++ +....++-++......|.++.++...+-.... .
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p-------------------------~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~ 1513 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDP-------------------------DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-R 1513 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCC-------------------------ccccchhhHHHhhhcccchhHHHhhhcchhhc-c
Confidence 788999999999999988765 34556666666666666666666554443322 1
Q ss_pred CCCHhHHHHH-HHHhcCCCChHHHHHHHH
Q 036704 307 IPDGLTVRSL-LCACTSPLSLYQGMQIHS 334 (634)
Q Consensus 307 ~p~~~~~~~l-l~~~~~~g~~~~a~~~~~ 334 (634)
.+....++.+ +.+--+.++++.......
T Consensus 1514 se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1514 SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 2222222222 333345555555554443
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.18 E-value=28 Score=26.65 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHH
Q 036704 95 SLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQ 174 (634)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 174 (634)
..++|..+.+.+...+. ....+-...+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++..-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45667777777666552 233333344455667788888855555555677777665543 366777777777776766
Q ss_pred CC
Q 036704 175 SG 176 (634)
Q Consensus 175 ~g 176 (634)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 55
No 378
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=70.39 E-value=65 Score=28.92 Aligned_cols=44 Identities=16% Similarity=0.385 Sum_probs=29.4
Q ss_pred HhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 036704 137 VFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQ 181 (634)
Q Consensus 137 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 181 (634)
+|+-..+|.+.....++..| ..+++++|.+++.++-+.|..|..
T Consensus 230 VfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 33334456666666666644 446888888888888888876654
No 379
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.69 E-value=4.9 Score=39.68 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=69.6
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE-RRSCVVDLLARAGRVHEAEDFINQM-AFDDD-IVVWKSLLASCKTHG 558 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 558 (634)
-+..+...++++.|..++.++. ...|+-. .|..=..++.+.+++..|+.=...+ ...|+ ...|..=+.++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3455667788889999988888 4566433 3333336778888888887765555 55553 334444456667778
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 559 NVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
.+.+|...|+......|+++.+...+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 888888888888888998887665553
No 380
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.44 E-value=1.1e+02 Score=33.98 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHhcccCCH--HHHHHHHHHHHHHhCCCCChhHHHH-
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRS---SGVRPNHVTLVGVLTACSHVGLV--EEGLQLYRIMQNEYGIIPTRERRSC- 517 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~- 517 (634)
|..|+..|...|+.++|+++|.+..+ ..-.--...+..++..+.+.+.. +-.+++-+..... .......++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cchhheeeeecc
Q ss_pred -----------HHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 036704 518 -----------VVDLLARAGRVHEAEDFINQM---AFDDDIVVWKSLLASCKTHGN-----------------VDVGKRA 566 (634)
Q Consensus 518 -----------l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~ 566 (634)
-+-.|......+-+..+++.+ ...++....+.++..|...=+ .+.....
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Q ss_pred HHHHHhcCCC-------CchhHHHHHHHHHhcCChHHHHHHH
Q 036704 567 AENILKIDPT-------NSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 567 ~~~~~~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
++.--...|. ....|...+-.+.+.|+.++|+.++
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iy 707 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIY 707 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHH
No 381
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.95 E-value=58 Score=26.83 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=47.4
Q ss_pred hHHHHHHHccCChHHHHHHhccCC---------CCCccchHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhhHHHHH
Q 036704 119 NHILNMYGKCGSLEDARMVFDEMP---------QRNVVSWTAMIAGCSQNGQ-ENAAIELYVQMLQSGLMPDQFTFGSII 188 (634)
Q Consensus 119 ~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll 188 (634)
+.++.-....+++...+.+++.+. ..+..+|++++.+.+.... --.+..+|+-|++.+.+++..-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555555555665555555543 1345567777777755554 334666777777777777777777777
Q ss_pred HHhhcC
Q 036704 189 RACSGL 194 (634)
Q Consensus 189 ~~~~~~ 194 (634)
.++.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 776554
No 382
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.57 E-value=11 Score=23.50 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=21.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhCC
Q 036704 280 TIIAGVASCSNANEAMSLFSEMGDRE 305 (634)
Q Consensus 280 ~li~~~~~~g~~~~A~~~~~~m~~~g 305 (634)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36778888999999999998887654
No 383
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.99 E-value=99 Score=28.34 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=122.9
Q ss_pred hCCCCChhHHhHHH------hcCHhHHHHHHHHHHHCCCCCCH---hHHHHHHHHhhccccHHHHHHHHHHHH---HhCC
Q 036704 339 KGFYSNVPVCNAIL------QHQAGELFRLFSLMLASQTKPDH---ITFNDVMGACAAMASLEMGTQLHCYIM---KTGL 406 (634)
Q Consensus 339 ~~~~~~~~~~~~ll------~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~ 406 (634)
.+-.|++..-|... ...+++|+.-|.+..+..-.... ..+-.++....+.+++++....+.++. +..+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34456665444333 23889999999998875433333 345567788889999999999888886 2222
Q ss_pred --CCchhHHHHHHHHHhhcCChHHHHHHHhcCC----C-CChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 036704 407 --ALDVFVMNGLMDMYVKCGSLGSARELFNFME----D-PDVV----SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN 475 (634)
Q Consensus 407 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 475 (634)
.-+..+.|++++......+.+--..+++.-. + .+.. |-..|...|...+++.+..++++++....-..+
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 2345567777777666666665555555322 1 2222 335577778888888888888888876532221
Q ss_pred -----------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH----HHHHhcCChHHHHH
Q 036704 476 -----------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV----DLLARAGRVHEAED 533 (634)
Q Consensus 476 -----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~ 533 (634)
...|..=|..|....+-..-..+|++...-..-.|.+.+...+- .+..+.|.+++|-.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 23466667777777777777778887665434556665554332 23346677777653
No 384
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.79 E-value=28 Score=32.87 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=68.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 518 VVDLLARAGRVHEAEDFINQM----AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
=.+-|.+..++..|...|.+- ...| +...|+.-..+-...|++..++.-..+++..+|.+..+|..=+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 345677888899999988876 2233 3456666666667789999999999999999999999999999999888
Q ss_pred CChHHHHHHHHHH
Q 036704 592 GKWEEVARLMGSM 604 (634)
Q Consensus 592 g~~~~A~~~~~~~ 604 (634)
.++.+|....++.
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 8877777666544
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.87 E-value=1e+02 Score=28.20 Aligned_cols=251 Identities=12% Similarity=0.140 Sum_probs=125.7
Q ss_pred cCCChhHHHHHHHHHhhCCCCC---CHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHH
Q 036704 287 SCSNANEAMSLFSEMGDRELIP---DGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLF 363 (634)
Q Consensus 287 ~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~ 363 (634)
+...+++|+.-|.+..+..-.- .-..+..++....+.|++++.+..+.+++.- .
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY-----------------------I 95 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY-----------------------I 95 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-----------------------H
Confidence 3457888888888876542121 2234455677778888888877777666531 0
Q ss_pred HHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHH-----hCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC
Q 036704 364 SLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMK-----TGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED 438 (634)
Q Consensus 364 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 438 (634)
+..... .-+....++++...+.+.+.+.-..+++.-.+ .+-+.=..+-..+...|...+.+..-.+++.++.+
T Consensus 96 kSAVTr--NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 96 KSAVTR--NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HHHHhc--cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 000000 12233445555555444444444443332221 11111122334455666666666666666665531
Q ss_pred ---------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhc-----ccCCHHHHHH
Q 036704 439 ---------------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSG-VRPNHVTLVGVLTACS-----HVGLVEEGLQ 497 (634)
Q Consensus 439 ---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~-----~~g~~~~a~~ 497 (634)
.-...|..-|..|...++-.....+|++..... .-|.+.... +|+-|. +.|.+++|..
T Consensus 174 SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 174 SCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 112346666777877777777777777654322 234444433 344443 5577777765
Q ss_pred HHHHHHHHhCCC--CC-h--hHHHHHHHHHHhcC----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 498 LYRIMQNEYGII--PT-R--ERRSCVVDLLARAG----RVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 498 ~~~~~~~~~~~~--~~-~--~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
-|-++-+.+.-. |. . .-|-.|.+++.+.| +-++|. -....|.......++.+|.. ++..+-.++++
T Consensus 253 DFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 253 DFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 544444332211 21 1 12334455555554 111110 01233455677788888754 34444444333
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.80 E-value=18 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.085 Sum_probs=20.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCCHHHHHH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPN--HVTLVGVLTACSHVGLVEEGLQ 497 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~ 497 (634)
.+..++|+..|....+.-..|. ..++..++.+++..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544422221 2344445555555555544443
No 387
>PRK09687 putative lyase; Provisional
Probab=66.59 E-value=1.2e+02 Score=28.66 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=16.2
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGD 303 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 303 (634)
+|..+-..-+.++.+.|+ ..|+..+-...+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~ 233 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELK 233 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHc
Confidence 455555556666666665 344444444443
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.46 E-value=1.1e+02 Score=28.40 Aligned_cols=171 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred HccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCChhhHHHHHHHhhcCCCch-hH
Q 036704 126 GKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQS----GLMPDQFTFGSIIRACSGLCCVG-LG 200 (634)
Q Consensus 126 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~-~a 200 (634)
.+++++++|.+++.. =...+.+.|+...|-++-.-|.+. ++++|......++..+...+.-+ .-
T Consensus 1 v~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HHTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH
T ss_pred CccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH
Q ss_pred hHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCC
Q 036704 201 RQLHAHVIKSEHG------SHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPN 274 (634)
Q Consensus 201 ~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 274 (634)
..+.+.+++.. . -|+..+..+...|.+.|++.+|+..|-.-.. ++
T Consensus 70 ~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----------------------------~~ 120 (260)
T PF04190_consen 70 KKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD----------------------------PS 120 (260)
T ss_dssp HHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----------------------------HH
T ss_pred HHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----------------------------hh
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHh-------------CC
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKK-------------GF 341 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------~~ 341 (634)
...+..++......|...++--++.++.-. |...++...|...++...+. +.
T Consensus 121 ~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~---------------yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~ 185 (260)
T PF04190_consen 121 AFAYVMLLEEWSTKGYPSEADLFIARAVLQ---------------YLCLGNLRDANELFDTFTSKLIESHPKLENSDIEY 185 (260)
T ss_dssp HHHHHHHHHHHHHHTSS--HHHHHHHHHHH---------------HHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHH---------------HHHhcCHHHHHHHHHHHHHHHhccCcchhccccCC
Q ss_pred CCChhHHhHH
Q 036704 342 YSNVPVCNAI 351 (634)
Q Consensus 342 ~~~~~~~~~l 351 (634)
.++.+..|.+
T Consensus 186 ~~~~PllnF~ 195 (260)
T PF04190_consen 186 PPSYPLLNFL 195 (260)
T ss_dssp ESS-HHHHHH
T ss_pred CCCCchHHHH
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.29 E-value=1.1e+02 Score=30.38 Aligned_cols=53 Identities=6% Similarity=-0.070 Sum_probs=26.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHhc--ccCCHHHHHHHHHHHHH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNHV--TLVGVLTACS--HVGLVEEGLQLYRIMQN 504 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 504 (634)
+...+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455666666666666554 333332 3333333332 34455566666665543
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.73 E-value=51 Score=24.27 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 036704 395 TQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEA 460 (634)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 460 (634)
.++++...+.|+- +......+-.+-...|+.+.|.+++..+. ..+..|+.++.++...|..+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3445555555532 33333333332234566667777777666 5666666666666666654444
No 391
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.65 E-value=31 Score=27.82 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 541 DDDIVVWKSLLASCKTHG---NVDVGKRAAENILK-IDPT-NSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.++..+--.+.+++.+.. +..+.+.+++.+.+ -.|. .....+.|+-.+.+.|+|++++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455666667777877655 56788899999997 4554 3445566777899999999999999988764
No 392
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=65.65 E-value=2.4e+02 Score=32.01 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=17.0
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHcCCCh
Q 036704 264 RTVFNEMESPNLASWNTIIAGVASCSNA 291 (634)
Q Consensus 264 ~~~~~~~~~~~~~~~~~li~~~~~~g~~ 291 (634)
..+.+.+..+|...-...+.++.+.+..
T Consensus 717 ~~l~~~L~D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 717 ALFAAALGDPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccCc
Confidence 3344445556776666677777766554
No 393
>PRK09687 putative lyase; Provisional
Probab=65.42 E-value=1.2e+02 Score=28.51 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=14.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEM 301 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (634)
+|.......+.++...|. +.+...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~l 62 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIEL 62 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHH
Confidence 555555556666665554 3333444443
No 394
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=65.35 E-value=54 Score=26.27 Aligned_cols=40 Identities=5% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 563 GKRAAENILK--IDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 563 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
..++|+.+.. +.-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566766665 445567778888888888899999888875
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.43 E-value=40 Score=25.34 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=29.5
Q ss_pred HhcCChHHHHHHHHhC------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 523 ARAGRVHEAEDFINQM------AFDDD-----IVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~------~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
.+.|++.+|.+.+.+. ...+. ......+.......|+.++|...+++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456666665555444 11111 223344555667778888888888887763
No 396
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.07 E-value=2.1e+02 Score=30.72 Aligned_cols=189 Identities=15% Similarity=0.134 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCC-------hhHHHHHHHHHHHcCCCCCcchhhH
Q 036704 48 FDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRS-------LQLGRKVHDHILSSKCQPDAVLHNH 120 (634)
Q Consensus 48 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (634)
|.++--|.+.|++++|.++...... ........|...+..+....+ -+....-|++..+.....|+.-+ +
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~-A 191 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR-A 191 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH-H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH-H
Confidence 5688889999999999999966655 356666778888888876533 22444445555443322233211 1
Q ss_pred HHHHHHccCChHHHH-HHhccC-----------CCC--------CccchH---------------------HHHHHHHhC
Q 036704 121 ILNMYGKCGSLEDAR-MVFDEM-----------PQR--------NVVSWT---------------------AMIAGCSQN 159 (634)
Q Consensus 121 l~~~~~~~g~~~~A~-~~~~~~-----------~~~--------~~~~~~---------------------~li~~~~~~ 159 (634)
+-...+++.-...-. .+...+ ... +..++. .....+.-.
T Consensus 192 vY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~LlLt 271 (613)
T PF04097_consen 192 VYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSNPLLYFQVLLLT 271 (613)
T ss_dssp HHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------HHHHHHHT
T ss_pred HHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchhHHHHHHHHHHH
Confidence 111112221111000 110000 000 001111 223455567
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhc-CCCChhHHHHHHHHHHh---cCChhHH
Q 036704 160 GQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSE-HGSHLISQNALIAMYTK---FDRILDA 235 (634)
Q Consensus 160 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~---~g~~~~A 235 (634)
|+++.|++.+-. ..+...|...+...+..+.-.+-.+... ..+.... -.|...-+..||..|.+ ..+..+|
T Consensus 272 gqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~A 346 (613)
T PF04097_consen 272 GQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPREA 346 (613)
T ss_dssp T-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HHHH
T ss_pred hhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHH
Confidence 888888888766 2234456666666666554332222211 2222111 11111446678888877 3677888
Q ss_pred HHHHhccCC
Q 036704 236 WNVFSSIAR 244 (634)
Q Consensus 236 ~~~~~~~~~ 244 (634)
..+|--+..
T Consensus 347 l~Y~~li~~ 355 (613)
T PF04097_consen 347 LQYLYLICL 355 (613)
T ss_dssp HHHHHGGGG
T ss_pred HHHHHHHHH
Confidence 888766654
No 397
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=63.91 E-value=1.1e+02 Score=27.51 Aligned_cols=86 Identities=12% Similarity=0.181 Sum_probs=48.1
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhc----------------CCCCChhhHHHHHHH
Q 036704 387 AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNF----------------MEDPDVVSWSSLIVG 450 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~~~~~~~~~~~l~~~ 450 (634)
+..+..--.++.+-....+++.+..-..+++ +...|+..+|...++. .-+|.+.....++..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~ 248 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA 248 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH
Confidence 3333333333333334444444444444433 3345555555554443 334777666666665
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPN 475 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~ 475 (634)
+.+ +++++|.+.+.++.+.|+.|.
T Consensus 249 ~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 249 CLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 544 568888888888888887765
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.88 E-value=92 Score=28.87 Aligned_cols=85 Identities=9% Similarity=-0.041 Sum_probs=54.4
Q ss_pred HHHHHHhhcCChHHHHHHH----hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc---
Q 036704 415 GLMDMYVKCGSLGSARELF----NFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACS--- 487 (634)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--- 487 (634)
.=|.+++..+++.++.... +.-.+-.+.....-|-.|.+.+.+..+.++-..-...--.-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3378888888888876543 333344444555556778888888888877766554311122344666665554
Q ss_pred --ccCCHHHHHHHH
Q 036704 488 --HVGLVEEGLQLY 499 (634)
Q Consensus 488 --~~g~~~~a~~~~ 499 (634)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 468888888876
No 399
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.87 E-value=54 Score=26.03 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 460 ALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 460 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
..+-+..+..-++.|++.....-+++|.+.+|+..|.++|+-++.+ ..+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 4455566666677888888888888888888888888888888754 333333455444
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.80 E-value=32 Score=30.22 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 539 AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 539 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
...|++.++..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5567777777777777777777777777777777777
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.65 E-value=34 Score=30.03 Aligned_cols=31 Identities=23% Similarity=0.143 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 473 RPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 473 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
.|++.+|..++.++...|+.++|.+..+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555554
No 402
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.57 E-value=2.3e+02 Score=30.62 Aligned_cols=179 Identities=9% Similarity=-0.088 Sum_probs=99.4
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA 485 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 485 (634)
+......-+....+.++++.+...+..|.. ....-..=+.+++...|+.++|..+|+.+... .+ -|..+...
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa~ 385 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAAQ 385 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHHH
Confidence 444455555566688999999999999863 11122222456666789999999999997432 12 33333221
Q ss_pred hcccCCHHHH-HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036704 486 CSHVGLVEEG-LQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 486 ~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 564 (634)
+.|..-.- ......-.. .+.... ...-+..+...|+...|...+..+....+......+.......|.++.++
T Consensus 386 --~Lg~~~~~~~~~~~~~~~--~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai 459 (644)
T PRK11619 386 --RLGEEYPLKIDKAPKPDS--ALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSV 459 (644)
T ss_pred --HcCCCCCCCCCCCCchhh--hhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 12211000 000000000 000011 11234556677999999988887733356666667777777889888888
Q ss_pred HHHHHHHhc---CCCCchhHHHHHHHHHhcCChHHHH
Q 036704 565 RAAENILKI---DPTNSAALVLLCNIYASSGKWEEVA 598 (634)
Q Consensus 565 ~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~ 598 (634)
....+.... .-.-+..|...+..+.+.-..+.++
T Consensus 460 ~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 460 QATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 877654331 1123444666666566555555554
No 403
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.39 E-value=45 Score=34.19 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC-CCCC--CHHHH
Q 036704 474 PNHVTLVGVLTACSHV--GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR-AGRVHEAEDFINQM-AFDD--DIVVW 547 (634)
Q Consensus 474 p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~~~--~~~~~ 547 (634)
|+..+..+++.-.... ...+-+..++..|.. .+.|-=.+. .+...|.+ .|+...|...+... ...| ..+..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 5555555554433322 233445555555542 333322222 23455554 58999999998887 4455 23455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 548 KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
-.|.+...+.|-.-.|-.++.+.+.+.-..+.++..++.++....+.+.|++.|+..++..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 6677888888888999999999999888889999999999999999999999999887653
No 404
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.25 E-value=40 Score=27.66 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=47.3
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 528 VHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|++..+-...+.+|.+.|..
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456777777774 2344555666677899999999999999999999999999888888776643
No 405
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.18 E-value=93 Score=25.68 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=29.3
Q ss_pred ChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 036704 440 DVVSWSSLIVGYAQFGC-GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489 (634)
Q Consensus 440 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 489 (634)
+..+|.+++.+.....- ---+..+|.-|.+.+.++++.-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44456666666644433 233455666666666666667777776666553
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.17 E-value=79 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRS 469 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 469 (634)
-|..|+.-|..+|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777778888888888888877766
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.15 E-value=42 Score=24.66 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHH
Q 036704 99 GRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAA 165 (634)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 165 (634)
+.++++.+.+.|+ .+......+..+-...|+.+.|.+++..++ ..+..|..++.++-..|+-.-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4566667776663 222333333322235577777888887777 6777777777777777665544
No 408
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.98 E-value=81 Score=24.29 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
...++|..+.+.+...+.. ...+--+-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 3466777777777665541 22222333556777888888854444445677777766643 36677777777777777
Q ss_pred hCCCCCCHHHH
Q 036704 469 SSGVRPNHVTL 479 (634)
Q Consensus 469 ~~~~~p~~~~~ 479 (634)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 4444333
No 409
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.95 E-value=22 Score=23.32 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 581 LVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+..++.++.+.|++++|.+..+.+++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 556778899999999999999999863
No 410
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.02 E-value=81 Score=27.11 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhCCCCC-hhHH-----HHHHHHHHhcCChHHHHHHHHhC
Q 036704 492 VEEGLQLYRIMQNEYGIIPT-RERR-----SCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 492 ~~~a~~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
++.|..+|+.+.+....+.+ .... ...+-.|.+.|.+++|.+++++.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 56677777777665221101 1111 12234455666666666666665
No 411
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=57.70 E-value=21 Score=31.64 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=34.7
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 522 LARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
..+.++.+.|.+++.+. ...| ....|-.+...-.+.|+++.|...|++.++++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34556666666666665 3333 3455666666666666666666666666666666543
No 412
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.09 E-value=1.9e+02 Score=27.86 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 492 VEEGLQLYRIMQNEYGI---IPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 492 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
.+.|.+.|+.......- ..++.....++....+.|+.++-..+++.....++......++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 34555556655542111 234445555555555666655544444444444455556666666666666666666666
Q ss_pred HHHh
Q 036704 569 NILK 572 (634)
Q Consensus 569 ~~~~ 572 (634)
.++.
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 6665
No 413
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.53 E-value=2.8e+02 Score=29.80 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=33.1
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 520 DLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
..+.+.|.++.-.++|+-. ..+.+-.-.+|+.+|++..+.+.++.|+.-..-+.+
T Consensus 352 ~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTM 406 (1226)
T ss_pred HHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHH
Confidence 3445666666666665433 112233456788888888888888887654433333
No 414
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.52 E-value=40 Score=19.93 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=6.7
Q ss_pred HHHHHhcCCHHHHHHH
Q 036704 551 LASCKTHGNVDVGKRA 566 (634)
Q Consensus 551 ~~~~~~~g~~~~a~~~ 566 (634)
.-.+...|++++|+.+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3334444444444444
No 415
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.87 E-value=1.5e+02 Score=26.53 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC---ChhHH--HHHHHHHHhcCChHHHHHHHHhC
Q 036704 473 RPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP---TRERR--SCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 473 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.+...-++.|+--|.-...+.+|...|..-. |+.| |...+ ..-|......|++++|++.+.++
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 3444444544444444333444444333322 4444 22222 23445556666666666666666
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.60 E-value=96 Score=24.09 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGD 303 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 303 (634)
..-|..|+..|...|..++|++++.+...
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34588999999999999999999999876
No 417
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.45 E-value=2.4e+02 Score=28.35 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=33.7
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCCccc--HHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcc--hhhHHHHHHHccC
Q 036704 54 LCKQNLYNEALVAFDFLQNNTNFRIRPST--YADLISACSSLRSLQLGRKVHDHILSSKCQPDAV--LHNHILNMYGKCG 129 (634)
Q Consensus 54 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 129 (634)
.+..|+.+-+..++ +. |..|+... -.+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|
T Consensus 9 A~~~g~~~iv~~Ll----~~-g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 9 AILFGELDIARRLL----DI-GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHhCCHHHHHHHH----HC-CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34455554433333 33 44444322 233344444555553 334444555444321 1112233344556
Q ss_pred ChHHHHHHhcc
Q 036704 130 SLEDARMVFDE 140 (634)
Q Consensus 130 ~~~~A~~~~~~ 140 (634)
+.+.+..+++.
T Consensus 80 ~~~~v~~Ll~~ 90 (413)
T PHA02875 80 DVKAVEELLDL 90 (413)
T ss_pred CHHHHHHHHHc
Confidence 66665555554
No 418
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=53.99 E-value=31 Score=32.10 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=32.8
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 523 ARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
.+.|+.++|..+|+.. ...| ++..+..+........+.-+|-..|-+++.++|.+..++.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 3456666666666654 3334 3444444444444555556666666666666665554443
No 419
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.94 E-value=90 Score=23.25 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 566 AAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 566 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.+++.++.+|+|..+...++..+...|++++|++.+-.+.+.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344555556666666666666666666666666665555544
No 420
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=53.57 E-value=3.2e+02 Score=29.42 Aligned_cols=184 Identities=13% Similarity=0.187 Sum_probs=92.0
Q ss_pred hhcCChHHHHHHHhcCCC-----CC-----hhhHHHHHHH--HHhcCChHHHHHHHH--------HHHhCCCCCCHHHHH
Q 036704 421 VKCGSLGSARELFNFMED-----PD-----VVSWSSLIVG--YAQFGCGEEALKLFR--------RMRSSGVRPNHVTLV 480 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~~~--~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~ 480 (634)
+-.+++..|...++.+.+ |+ ...+...+.+ +...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 345778888888887752 22 1123333333 445689999999997 455555444444333
Q ss_pred HH----HHHhcccCCHHH--HHHHHHHHHHHhCCCCC--hhHHHHH-HHHHHhc---------CChHHHHHHH-HhCCCC
Q 036704 481 GV----LTACSHVGLVEE--GLQLYRIMQNEYGIIPT--RERRSCV-VDLLARA---------GRVHEAEDFI-NQMAFD 541 (634)
Q Consensus 481 ~l----~~~~~~~g~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-~~~~~~~---------g~~~~A~~~~-~~~~~~ 541 (634)
.+ |.-+....+..+ +.++++.+.....-.|+ ..++..+ +.++... ..+.++++.. +..+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 111122222333 66666666532122222 2223333 3333211 1233344444 222211
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchhHH-----HHHHHHHhcCChHHHHHHHHHHH
Q 036704 542 DD-IVVWKSLLASCKTHGNVDVGKRAAENILKI---DPT-NSAALV-----LLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 542 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
-- ..+++.+...+. .|+..+........... .|+ ....|. .+...+...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 11 223333333333 68887777766665542 233 233442 34455778899999999887664
No 421
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.35 E-value=29 Score=30.86 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=40.9
Q ss_pred HhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036704 485 ACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD 543 (634)
Q Consensus 485 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 543 (634)
...+.++.+.+.+++.+.. ...| +...|-.+...-.+.|+++.|.+.+++. .+.|+
T Consensus 4 ~~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3456788888888888877 3334 5667777777778888888888888877 55553
No 422
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.06 E-value=2.1e+02 Score=27.28 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHH-HHHHHHhcCCHHH
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-------AFDDDIVVWKS-LLASCKTHGNVDV 562 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~-l~~~~~~~g~~~~ 562 (634)
..++-.+..++..+..|-..-...+.....-|++.|+.+.|.+.+.+. +.+-|...+.. ++-.|..+.-+.+
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~ 162 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTE 162 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHH
Confidence 344555555566554343334556667778899999999999998765 44444443222 2222333333344
Q ss_pred HHHHHHHHHhcCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 563 GKRAAENILKIDPT-----NSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 563 a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
-++..+.+.+..-+ --.+|..+ -+....++.+|-.+|-...
T Consensus 163 ~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 163 SIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHc
Confidence 44444444443332 11233322 2345578888888875543
No 423
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=52.64 E-value=52 Score=30.35 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=33.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+-.++...++++.|....++.+..+|.++.-..--+-+|.+.|-+.-|++-++...
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~ 242 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV 242 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH
Confidence 33445556666666666666666666666655556666666666666666655543
No 424
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=52.41 E-value=1.1e+02 Score=23.83 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 562 VGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 562 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (634)
.+.+.+.+...+.|..+..+..++.-+.....|+++..--++
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456667777778888777777666655555555555554443
No 425
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.09 E-value=1.7e+02 Score=27.17 Aligned_cols=84 Identities=6% Similarity=-0.028 Sum_probs=54.9
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHH----
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM---AFDDDIVVWKSLLASCK---- 555 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~---- 555 (634)
|.+++..+++.++....-..-.. .-+....+...-|-.|.+.|.+..+.++-... +...+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 67888888888877654443322 12224455666677888999998888887766 22223344666665554
Q ss_pred -hcCCHHHHHHHH
Q 036704 556 -THGNVDVGKRAA 567 (634)
Q Consensus 556 -~~g~~~~a~~~~ 567 (634)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 458888888876
No 426
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=50.38 E-value=2.2e+02 Score=32.43 Aligned_cols=83 Identities=11% Similarity=0.203 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcC--ChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHH---HHHHHHHcCCCh
Q 036704 217 ISQNALIAMYTKFD--RILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWN---TIIAGVASCSNA 291 (634)
Q Consensus 217 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~---~li~~~~~~g~~ 291 (634)
.-...++.+|++.+ ++++|+....++.+.+....-.-++-++-.-.+.++|+... .+|+ +++-|--.+.++
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~Ly~~AL----G~YDl~Lal~VAq~SQkDP 888 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKLYDVAL----GTYDLELALMVAQQSQKDP 888 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHHHHHHh----hhcCHHHHHHHHHHhccCh
Confidence 34456788888888 88888888888876655544444444444444444444321 1121 223333444566
Q ss_pred hHHHHHHHHHhh
Q 036704 292 NEAMSLFSEMGD 303 (634)
Q Consensus 292 ~~A~~~~~~m~~ 303 (634)
.+-+-+++++.+
T Consensus 889 KEYLPfL~~L~~ 900 (928)
T PF04762_consen 889 KEYLPFLQELQK 900 (928)
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 427
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.34 E-value=42 Score=31.35 Aligned_cols=80 Identities=6% Similarity=0.060 Sum_probs=53.0
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 507 GIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKS-LLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.+..|+..|...+.-..+.|.+.+.-.++.+. ...| +...|-. ..--+...++++.+..++.+.+..+|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34445666665555555566666666666666 3334 4444433 2223567889999999999999999999988876
Q ss_pred HHH
Q 036704 584 LCN 586 (634)
Q Consensus 584 l~~ 586 (634)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 544
No 428
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=49.20 E-value=1.3e+02 Score=23.78 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCchhHH----HHHHHHHhcCChHHHHHHHHHH
Q 036704 544 IVVWKSLLASCKTHGNVDVGKRAAENILK-------IDPTNSAALV----LLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
...+..|..++...|++++++...++++. ++.+....|. +-+.++...|+.++|+..|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33455566667777777776666655553 4455444443 3455677889999999888754
No 429
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.83 E-value=1.9e+02 Score=28.50 Aligned_cols=136 Identities=10% Similarity=-0.012 Sum_probs=70.7
Q ss_pred hhhHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--------HhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 441 VVSWSSLIVGY--AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLT--------ACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 441 ~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--------~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
+..|-.++-.+ ...+++.+|.++-+.....-..-|..|+..+.. ++...|+...-..++........+..
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 34454444433 234677777777776655433446666654432 22234554444444444433223333
Q ss_pred C----hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 511 T----RERRSCVVDLLARAGRVHEAEDFINQMAFDD--DI----VVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 511 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
| ....|.|+..|...+-++.|..+..+...+- +. .-+-.+...-.-.+++..|.+.+-.+....|.
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 3 2344566666666777777777777663211 11 11112223334556777777777777777775
No 430
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=48.60 E-value=2.4e+02 Score=26.54 Aligned_cols=55 Identities=18% Similarity=0.058 Sum_probs=24.9
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036704 480 VGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFIN 536 (634)
Q Consensus 480 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (634)
+.....|...|.+.+|.++.++..+- .+.+...+..++..+...|+--.|.+-++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 33444455555555555555554421 12233444445555555555444433333
No 431
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.49 E-value=2.6e+02 Score=28.96 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=36.6
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCCC--CChh---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 036704 414 NGLMDMYVKCGSLGSARELFNFMED--PDVV---SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP 474 (634)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 474 (634)
..++.-|.+.+++++|..++..|.= -... ..+.+++.+.+..-.++....++.+...-..|
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap 477 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAP 477 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCC
Confidence 4567788899999999999988872 1222 33444455555544455555555555443333
No 432
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.73 E-value=4.4e+02 Score=29.11 Aligned_cols=136 Identities=7% Similarity=0.011 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHh
Q 036704 278 WNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAG 357 (634)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 357 (634)
+.+....+...|+.+.+..+-.-|. -|..++.-+...+.+++|.+++..-.. ...-......++.+.+.
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~~--~el~yk~ap~Li~~~p~ 575 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQRN--PELFYKYAPELITHSPK 575 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhccc--hhhHHHhhhHHHhcCcH
Confidence 3344445556677666665544443 255666667777777777776544311 11111122334444555
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc---cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChH
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMA---SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLG 427 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (634)
+....+..+.+ ..+..-...++..+.+.+ ....+...++.....-...++..+|.++..|++..+-+
T Consensus 576 ~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 576 ETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred HHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 55555544433 223333444555555542 34455555555554444457888888888887755433
No 433
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.59 E-value=28 Score=37.45 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=45.1
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVD 561 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 561 (634)
+|..+.+.|-++-|+.+.+.=..+ .+....+|+++.|++.-.++. +..+|..|+......|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 444455666666665554433322 123345677777777666654 4567777777777777777
Q ss_pred HHHHHHHHHHh
Q 036704 562 VGKRAAENILK 572 (634)
Q Consensus 562 ~a~~~~~~~~~ 572 (634)
-|+..|++...
T Consensus 690 IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 690 IAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHhhh
Confidence 77777766543
No 434
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.59 E-value=35 Score=31.91 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=33.8
Q ss_pred CChh-hHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 036704 273 PNLA-SWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSL 316 (634)
Q Consensus 273 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 316 (634)
|+.. -|+.-|....+.|++++|+.++++.++.|+.--..+|...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3444 3678999999999999999999999998876555555443
No 435
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.37 E-value=2.5e+02 Score=26.20 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=91.9
Q ss_pred HHHhhccccHHHHHHHHHHHHHhCCCCchh-------HHHHHHHHHhhcCChHHHHHHHhcCC-------CCC-hhhHHH
Q 036704 382 MGACAAMASLEMGTQLHCYIMKTGLALDVF-------VMNGLMDMYVKCGSLGSARELFNFME-------DPD-VVSWSS 446 (634)
Q Consensus 382 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~ 446 (634)
.+-..+.+++++|+..+.++...|+..+.. +...+...|.+.|+...--+...... +|. .....+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 344456667777777777777766655543 34456677777777665544443322 222 224455
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHhcccCCHHHHHHHHHHHHHH---hCCCCChhHHHH
Q 036704 447 LIVGYAQF-GCGEEALKLFRRMRSSGVRPNH-----VTLVGVLTACSHVGLVEEGLQLYRIMQNE---YGIIPTRERRSC 517 (634)
Q Consensus 447 l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 517 (634)
|+.-+-.. ..++..+.+....++--.+.+. ..=.-++..+.+.|.+.+|..+...+..+ +.-+|+..+...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 55554433 2355555555544432111111 11234566667777777777765544432 133333222111
Q ss_pred H-HHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 036704 518 V-VDLLARAGRVHEAEDFINQM-------AFDDDIVVWKSLLAS--CKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 518 l-~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 572 (634)
+ -.+|-...+..++..-+... -.+|....-..+..+ .+...++..|...|-++.+
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 1 13333334444433333222 223332222233333 2334466777777766666
No 436
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.82 E-value=2.8e+02 Score=26.63 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc------cCCHHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChH
Q 036704 457 GEEALKLFRRMRSSGVRPNHVTLVGVLTACSH------VGLVEEGLQLYRIMQNEYGIIPTRE-RRSCVVDLLARAGRVH 529 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 529 (634)
++++..++++...++ .|.+......|.++-. .-+|.....+|+.+.. +.|++. +.|-- -+..+..-.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRA-VAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRA-VALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHH-HHHHHhhhHH
Confidence 678888888888887 4888887777766532 2367788888888774 445433 33322 2344455577
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 530 EAEDFINQMAFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 530 ~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
.++..++-+...|. ...+..-...+.+.|..++|...|++++.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 77888877744432 223333455578899999999999999987765443
No 437
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.24 E-value=3.8e+02 Score=27.95 Aligned_cols=216 Identities=15% Similarity=0.132 Sum_probs=107.3
Q ss_pred hccccHHHHHHHHHHHHHhCC--------CCchhHHHHH---HHHHhhcCChHHHHHHHhcCC-------C---------
Q 036704 386 AAMASLEMGTQLHCYIMKTGL--------ALDVFVMNGL---MDMYVKCGSLGSARELFNFME-------D--------- 438 (634)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~-------~--------- 438 (634)
.....++++...|.......- ..++++..+| ..++-..|+.+.|-.++++.. .
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 345556777777766654321 1234444444 345666777666655554432 1
Q ss_pred -------C-ChhhHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHh
Q 036704 439 -------P-DVVSWSSL---IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACS-HVGLVEEGLQLYRIMQNEY 506 (634)
Q Consensus 439 -------~-~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~ 506 (634)
| |-..|-+| +..+.+.|.+..|.++-+-+......-|+.....+|+.|+ ++.+++--+++++......
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 1 11123322 4456667777777777777776654445666666666654 5566777777766664321
Q ss_pred --CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC-CCc
Q 036704 507 --GIIPTRERRSCVVDLLARAGR---VHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKI-DP-TNS 578 (634)
Q Consensus 507 --~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p-~~~ 578 (634)
..-|+...-.+|+..|.+... .+.|...+.++ ...| .++..|+..+.-.. .|...--++... .+ ...
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P--~vl~eLld~~~l~~---da~~~~~k~~~~~a~~~e~ 483 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP--LVLSELLDELLLGD---DALTKDLKFDGSSAENSEL 483 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc--HHHHHHHHhccCCc---hhhhhhhcccccccccccc
Confidence 223444444455555555444 34444444444 2222 23333443332211 111111111111 11 134
Q ss_pred hhHHHHHHHHHhcCC----hHHHHHHHHHHHh
Q 036704 579 AALVLLCNIYASSGK----WEEVARLMGSMKE 606 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~----~~~A~~~~~~~~~ 606 (634)
.++..++.+|..... ..+++..++....
T Consensus 484 pal~~lv~lY~~r~~~vWk~P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 484 PALMLLVKLYANRNEEVWKLPDVLSFLESAYH 515 (665)
T ss_pred hHHHHHHHHHHhhhhHhhcChHHHHHHHHHHH
Confidence 477788888875542 3355555555544
No 438
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.16 E-value=3.4e+02 Score=27.31 Aligned_cols=75 Identities=11% Similarity=-0.039 Sum_probs=35.5
Q ss_pred hcCChHHHHHHhhcccCCCCcc-chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcc--cHHHHHHHhhccCChhHHH
Q 036704 24 LCMLLDQAGEVVDSFLRRFDDI-WDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPS--TYADLISACSSLRSLQLGR 100 (634)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~ 100 (634)
+.|+.+-+..+++.-..++... ...+.+...+..|+.+- .+.+.+. |..|+.. ...+.+...+..|+.+.+.
T Consensus 11 ~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~-ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 11 LFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKH-GAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhC-CCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 4577777777776533333222 11234555556666543 3333333 3333322 1223344455667765544
Q ss_pred HHH
Q 036704 101 KVH 103 (634)
Q Consensus 101 ~~~ 103 (634)
.++
T Consensus 86 ~Ll 88 (413)
T PHA02875 86 ELL 88 (413)
T ss_pred HHH
Confidence 443
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.12 E-value=1.5e+02 Score=29.53 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 518 VVDLLARAGRVHEAEDFINQMAF---------DD-DIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
|++..+-.|++..|+++++.+.. .+ ...++-.++-+|...+++.+|++.|..++
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655511 11 23344455555555555555555555543
No 440
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.78 E-value=1.4e+02 Score=24.71 Aligned_cols=64 Identities=8% Similarity=0.036 Sum_probs=40.9
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 036704 167 ELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDR 231 (634)
Q Consensus 167 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 231 (634)
++.+.+++.|++++..-. .++..+...+..-.|..+++.+.+.+...+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 345556677776655433 4555556666667788888888887777666655555566666553
No 441
>PRK09857 putative transposase; Provisional
Probab=44.08 E-value=1.5e+02 Score=28.10 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCC
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRKV 612 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 612 (634)
.++.-....++.++-.++++.+.+..|........++.-+.+.|..++++++.++|...|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334566776677777777766676666677788888888888889999999998887543
No 442
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.74 E-value=3.6e+02 Score=27.23 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=56.1
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcC---CCCChhhHHHHH
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFM---EDPDVVSWSSLI 448 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~ 448 (634)
..+......++..+ .|+...+..+++.+...+...+... ..+++... .+.+......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~----------------v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLEL----------------LEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHH----------------HHHHHhhhhhccCCCccHHHHHH
Confidence 45555555555543 6888888888777654422222222 22222211 112222334444
Q ss_pred HHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 036704 449 VGYAQ---FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG 490 (634)
Q Consensus 449 ~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 490 (634)
+++.+ .++.+.|+.++.+|.+.|..|....-..++.++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 44444 4789999999999999988777555555555544433
No 443
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=43.69 E-value=24 Score=26.16 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=17.7
Q ss_pred cCChHHHHHHhhcccC-CCCccchHHHHHHHHhcCC
Q 036704 25 CMLLDQAGEVVDSFLR-RFDDIWDFDLFSSLCKQNL 59 (634)
Q Consensus 25 ~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~~~~~~~ 59 (634)
.|+.+.|..+++.+.+ +.+.-+. .++.++...|.
T Consensus 47 ~g~~~aa~~Ll~~L~~~r~~~wf~-~Fl~AL~~~g~ 81 (88)
T cd08812 47 KGNIAAAEELLDRLERCDKPGWFQ-AFLDALRRTGN 81 (88)
T ss_pred cChHHHHHHHHHHHHHhccCCcHH-HHHHHHHHcCC
Confidence 3566666666666655 3333333 45555555554
No 444
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.52 E-value=3.5e+02 Score=29.83 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=101.4
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEA 460 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 460 (634)
+|..+.+.|.++-|+.+.+. ..+ -......+|+++.|++.-..+. +...|..|...-.+.|+.+-|
T Consensus 626 iIaYLqKkgypeiAL~FVkD---------~~t---RF~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~Ia 691 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKD---------ERT---RFELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIA 691 (1202)
T ss_pred HHHHHHhcCCcceeeeeecC---------cch---heeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHH
Confidence 44445556666655554432 221 1233456789999988777665 445799999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036704 461 LKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAF 540 (634)
Q Consensus 461 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (634)
...|++...- ..|--.|.-.|+.++-.++.+.+..+ .|... ......-.|+.++-.++++..+.
T Consensus 692 Em~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~ 755 (1202)
T KOG0292|consen 692 EMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQ 755 (1202)
T ss_pred HHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCc
Confidence 9999886642 33444567789988877776655432 22221 11122236899999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 541 DDDIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.|-.. .....+|.-++|.++.++.-.
T Consensus 756 ~~lay------lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 756 LPLAY------LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred ccHHH------HHHhhcCcHHHHHHHHHhhcc
Confidence 54221 123467888889988888765
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.33 E-value=86 Score=19.96 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=21.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLT 484 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 484 (634)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666677777777777777666666665553
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.11 E-value=94 Score=28.63 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=24.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-----C---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-----A---FDDDIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
.+...|.+.|++++|.++|+.+ . ..+...+...+..++...|+.+..+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445555666666666666555 0 111223344444444555555544443
No 447
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.88 E-value=3e+02 Score=25.75 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=37.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHH-------HHHHHhcCCCChHHHHHH
Q 036704 281 IIAGVASCSNANEAMSLFSEMGDRELIPDGLTVR-------SLLCACTSPLSLYQGMQI 332 (634)
Q Consensus 281 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------~ll~~~~~~g~~~~a~~~ 332 (634)
+.+-..+.+++++|...+.+....|+..|..+.+ .+...|...|+....-+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4556678899999999999999999887776543 455566666665544443
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.82 E-value=93 Score=28.66 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=27.5
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCC----CCChhHHHHHHHHHHhcCChHHHHHH
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGI----IPTRERRSCVVDLLARAGRVHEAEDF 534 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 534 (634)
.+...|...|++++|.++|+.+...+.- .+...+...+..++.+.|+.+..+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445555666666666666665433221 11233344455555566665555443
No 449
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.80 E-value=56 Score=32.69 Aligned_cols=104 Identities=12% Similarity=-0.018 Sum_probs=68.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhc
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVG-VLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLARA 525 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 525 (634)
.+.+...++++.|..++.+.++. .||...|-. =..++.+.+++..|..=..++.+. .|+. ..|-.=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 45567778999999999999987 677555443 347888999999988877777643 3431 1111112333344
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 036704 526 GRVHEAEDFINQM-AFDDDIVVWKSLLASCKT 556 (634)
Q Consensus 526 g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~ 556 (634)
+++.+|...|+.. ...|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 5667777777766 677877666666665533
No 450
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.29 E-value=1.9e+02 Score=23.17 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHH
Q 036704 459 EALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRI 501 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 501 (634)
.+..+|+.|..+|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554433 44455555556666666666666554
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.77 E-value=2.5e+02 Score=32.02 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=46.8
Q ss_pred cHHHHHHHhhccCChhHHHHHHHHHHHcCCCCC----cchhhHHHHHHHccCChHHHHHHhccCCC--CCccchHHHHHH
Q 036704 82 TYADLISACSSLRSLQLGRKVHDHILSSKCQPD----AVLHNHILNMYGKCGSLEDARMVFDEMPQ--RNVVSWTAMIAG 155 (634)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 155 (634)
.|..+++.+-+.+..+.+.++-...++.- +++ ..+++.+.+-....|.+-+|...+-..+. ........++-.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 46677777777777777777766666542 221 23455666666666777777666654432 112234445555
Q ss_pred HHhCCChh
Q 036704 156 CSQNGQEN 163 (634)
Q Consensus 156 ~~~~g~~~ 163 (634)
++..|.++
T Consensus 1064 Lfecg~l~ 1071 (1480)
T KOG4521|consen 1064 LFECGELE 1071 (1480)
T ss_pred HHhccchH
Confidence 55555443
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.13 E-value=67 Score=21.85 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=11.6
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHH
Q 036704 480 VGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 480 ~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
..++.++...|++++|.+.++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455555555555555555444
No 453
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=38.31 E-value=6e+02 Score=28.23 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=91.4
Q ss_pred CHhHHHHHHHHHHHC----CCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHH---HH--HHHhhcCC
Q 036704 355 QAGELFRLFSLMLAS----QTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNG---LM--DMYVKCGS 425 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~--~~~~~~g~ 425 (634)
+++++.++.+..... -..+....+..+..+..-.|++++|..+.....+..-..+...+.. +. ..+...|.
T Consensus 473 ~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 473 DPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred CHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 556666555554432 1234445666677777788888888888777765433333333322 21 23445553
Q ss_pred hHH--HHHHHhcCC-----CC-----ChhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHhcccC
Q 036704 426 LGS--ARELFNFME-----DP-----DVVSWSSLIVGYAQF-GCGEEALKLFRRMRSSGVRPNHVTL--VGVLTACSHVG 490 (634)
Q Consensus 426 ~~~--A~~~~~~~~-----~~-----~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g 490 (634)
... ....|.... +. -..++..+..++.+. +...++..-++--......|-...+ ..++......|
T Consensus 553 ~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 553 VARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcC
Confidence 222 222333222 11 123344444444441 1122222222222222222222222 36677778889
Q ss_pred CHHHHHHHHHHHHHHhCCCC--C--hhHHHHHH--HHHHhcCChHHHHHHHHhC
Q 036704 491 LVEEGLQLYRIMQNEYGIIP--T--RERRSCVV--DLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~--~--~~~~~~l~--~~~~~~g~~~~A~~~~~~~ 538 (634)
++++|...++++... ...+ . -......+ ......|+.++|.....+-
T Consensus 633 dl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 633 DLDKALAQLDELERL-LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 999999888888754 2222 1 11111222 2334678888888777663
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.26 E-value=63 Score=22.01 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
--.+|.+|...|++++|.++++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 335666777777777777766655
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.06 E-value=1.9e+02 Score=24.98 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhCCCCCC--HHHH-----HHHHHHhcccCCHHHHHHHHHHHHH
Q 036704 457 GEEALKLFRRMRSSGVRPN--HVTL-----VGVLTACSHVGLVEEGLQLYRIMQN 504 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~--~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~ 504 (634)
.+.|+.+|+.+.+.--.|+ .... ...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5778888888777643331 1112 2234567788888888888888874
No 456
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.10 E-value=1.7e+02 Score=29.17 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=43.9
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHh-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEY-----GIIP-TRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
...|++..+-.||+..|+++++.+.-.. .+.+ .+.++--+.-+|...+++.+|.+.|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999988664210 1111 2345556677888999999999999987
No 457
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.99 E-value=1.5e+02 Score=31.39 Aligned_cols=248 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred hHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCC------h-hHHH
Q 036704 28 LDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRS------L-QLGR 100 (634)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~-~~a~ 100 (634)
.+-|....+..+......++ .++.+.. .|+...+++....+. +...-......++..++...+ . ....
T Consensus 283 ~~~a~~~~~~~~~~~~~~~e-~~~~~i~-~~d~~~vL~~~~~~~---~~~w~aahladLl~~~g~L~~~~~~~~~~~~lr 357 (566)
T PF07575_consen 283 HEYAQSCLEEFPPDSTNPLE-QILLAIF-EGDIESVLKEISSLF---DDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLR 357 (566)
T ss_dssp HHHHHHHHHHS---TTSTTH-HHHHHHH-TS--GGGHHHHHHH-----HHHHHHHHHHHHHHTTSS--SS-----TS-HH
T ss_pred HHHHHHHHhcCCCCCCCHHH-HHHHHHH-ccCHHHHHHHHHHHc---cchhHHHHHHHHHHhcCccccccccccccccHH
Q ss_pred HHHHHHHHcCCCCCcchhhHHHHHHHccC--ChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 036704 101 KVHDHILSSKCQPDAVLHNHILNMYGKCG--SLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLM 178 (634)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (634)
+.+-.--...+-.+...|..-+..+..++ .......++...+-++...-.-++..|.+.|-.+.+.++.+.+-.. .
T Consensus 358 e~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~--~ 435 (566)
T PF07575_consen 358 EYLLLEYASSLMSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR--L 435 (566)
T ss_dssp HHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--H
Q ss_pred CChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhh
Q 036704 179 PDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFS 258 (634)
Q Consensus 179 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 258 (634)
....-|...+..+.+.|+...+..+-..+.+.....+......+++......-...-+..+-...+
T Consensus 436 ~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yre-------------- 501 (566)
T PF07575_consen 436 LKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYRE-------------- 501 (566)
T ss_dssp HHHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHH--------------
Q ss_pred ccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 036704 259 KLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCA 319 (634)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 319 (634)
..-..+.|++.+|.+.+-.+....+.|...-...+..+
T Consensus 502 -----------------------F~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 502 -----------------------FYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp -------------------------------------------------------------
T ss_pred -----------------------HHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 458
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.70 E-value=4.8e+02 Score=26.66 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=109.0
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHH--HHHHhcCC----CC-----------ChhhHHHH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSA--RELFNFME----DP-----------DVVSWSSL 447 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~----~~-----------~~~~~~~l 447 (634)
-...+.++...+++..+...|.......+|.-+..|.+.|....- .+-++.+. .| +...+...
T Consensus 27 ~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~ 106 (696)
T KOG2471|consen 27 QFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNF 106 (696)
T ss_pred ccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhh
Confidence 345667788888888888777776666777777777777654322 11111111 11 11122222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHhcccCCHHHHHHHHH---HHHHHhCCCCCh--hHHH
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPN------HVTLVGVLTACSHVGLVEEGLQLYR---IMQNEYGIIPTR--ERRS 516 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~--~~~~ 516 (634)
.-.|..+..+..|+++...+... ..|- .+++. ....+......++|+.++. ++.......|.. ..-+
T Consensus 107 aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l-~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~n 184 (696)
T KOG2471|consen 107 AVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLL-SDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPAN 184 (696)
T ss_pred heeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchh
Confidence 22344445556666665555433 1111 11111 1223344455566665544 333321222211 1111
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
...+.+....|..-+.... |.......-+.++....+...+.+-.+-+.....+++.....-...+.-.|++.+
T Consensus 185 ----n~~kt~s~~aAe~s~~~a~--~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~k 258 (696)
T KOG2471|consen 185 ----NLLKTLSPSAAERSFSTAD--LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPK 258 (696)
T ss_pred ----hhcccCCcchhcccchhhc--cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHH
Confidence 2223344444443333221 1112222233444555556666555555555555566666666777888999999
Q ss_pred HHHHHHHHHhCCCcCCCC
Q 036704 597 VARLMGSMKERGVRKVPG 614 (634)
Q Consensus 597 A~~~~~~~~~~g~~~~~~ 614 (634)
|.+++ ...|+..+||
T Consensus 259 A~KlL---~~sni~~~~g 273 (696)
T KOG2471|consen 259 AMKLL---LVSNIHKEAG 273 (696)
T ss_pred HHHHH---HhcccccccC
Confidence 98876 4566666665
No 459
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.61 E-value=2.1e+02 Score=26.78 Aligned_cols=105 Identities=10% Similarity=0.166 Sum_probs=58.9
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHH---HHhcCCHHHHHHHHH
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-------AFDDDIVVWKSLLAS---CKTHGNVDVGKRAAE 568 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~ 568 (634)
+++.....|-..-...+..+.+-|+..++.+.+.++..+. +.+-| ++...++. |....-+++-++..+
T Consensus 102 i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiD--v~l~kiRlg~~y~d~~vV~e~lE~~~ 179 (412)
T COG5187 102 IREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKID--VFLCKIRLGLIYGDRKVVEESLEVAD 179 (412)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchh--hHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3344433333344667778889999999999999888765 33333 33333333 333333456666666
Q ss_pred HHHhcCCC--CchhHHHHHH-HHHhcCChHHHHHHHHHHH
Q 036704 569 NILKIDPT--NSAALVLLCN-IYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 569 ~~~~~~p~--~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~ 605 (634)
.+++..-+ -..-|...-. -+....++.+|-.++...+
T Consensus 180 ~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 180 DIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 66665543 1111222212 2334567788877776554
No 460
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.61 E-value=5.2e+02 Score=27.05 Aligned_cols=137 Identities=13% Similarity=0.031 Sum_probs=68.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhh-cCCCchhHhHHHHHHHHhc---CCCChhHHHHHHHHHHh
Q 036704 153 IAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACS-GLCCVGLGRQLHAHVIKSE---HGSHLISQNALIAMYTK 228 (634)
Q Consensus 153 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~ 228 (634)
|..+.+.|-+..|++.-+-+......-|+.....+|..|+ +..+++-..++++.....+ .-|+-..-.+|+..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4455667777777777776666544445555666666654 5556666666666554432 34555444556666665
Q ss_pred cCC---hhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCC-----CCChhhHHHHHHHHHcCC
Q 036704 229 FDR---ILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEME-----SPNLASWNTIIAGVASCS 289 (634)
Q Consensus 229 ~g~---~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g 289 (634)
... -..|...+.+....-+...+.++..+.-.+.|..---++. .+-..++..++..|+...
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~~l~~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~ 497 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHPLVLSELLDELLLGDDALTKDLKFDGSSAENSELPALMLLVKLYANRN 497 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCcHHHHHHHHhccCCchhhhhhhcccccccccccchHHHHHHHHHHhhh
Confidence 544 3344444444433333333333333322222222111111 133445666666666543
No 461
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=36.06 E-value=46 Score=24.41 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=23.5
Q ss_pred hHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHH
Q 036704 20 DAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEA 63 (634)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 63 (634)
......|+.+.|+.+++.+. +. ..|-..++.++...|...-|
T Consensus 40 a~~~~~G~~~aa~~Ll~~L~-r~-~~Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 40 AAENNSGNIKAAWTLLDTLV-RR-DNWLEPFLDALRECGLGHLA 81 (84)
T ss_pred HHHhcCChHHHHHHHHHHHh-cc-CChHHHHHHHHHHcCCHHHH
Confidence 33344577777777777776 32 33332566666666654433
No 462
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.88 E-value=65 Score=30.08 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=37.4
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036704 487 SHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM-AFDD 542 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 542 (634)
.+.|+.++|..+|+.... +.|+ +....-+.......+++-+|-.+|-+. .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 478999999999998874 4554 445555555555667788888887766 5555
No 463
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.42 E-value=2.3e+02 Score=28.38 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=30.8
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 534 FINQMAFDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 534 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
+|.....+|. ..+++..+..+.+.+++..|..+.++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3444466663 4477778888889999999999999999998864
No 464
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.24 E-value=7.6e+02 Score=28.53 Aligned_cols=57 Identities=16% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
|..+++.+...+..+.+.++-..+.+. .+++ ..+++.+.+-....|.+.+|.+.+-+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 444445555555555555554444432 2221 22334444444555555555544433
No 465
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.93 E-value=66 Score=30.18 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=26.7
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 036704 148 SWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFG 185 (634)
Q Consensus 148 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 185 (634)
-||.-|..-.+.||.++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36677777777888888888888887777654444443
No 466
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.49 E-value=4.3e+02 Score=25.50 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh---cCChHHHHHH
Q 036704 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR---AGRVHEAEDF 534 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 534 (634)
+.-+.+++++.+.+ +-+......++..+.+..+.++..+.++++.. ..+-+...|...++.... .-.++...++
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~--~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF--KNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Q ss_pred HHhC-----CCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 535 INQM-----AFDDDI---------------VVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 535 ~~~~-----~~~~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
|.+. ...... .++..+...+...|-.+.|..+++.+++.+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
No 467
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=34.23 E-value=2.5e+02 Score=22.58 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVW-KSLLASCKTHGNVDVGKRAAEN 569 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~ 569 (634)
..+..++..++.-.|..++|.++++..+-.++-..+ ..++..|....+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455666666666666666666666444433322 3455666666665555555444
No 468
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=34.04 E-value=1e+02 Score=18.49 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 579 AALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+|..|+.+-...+++++|.+=|++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567788888888888888877776654
No 469
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.94 E-value=4.1e+02 Score=25.17 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhcCChHHHH
Q 036704 441 VVSWSSLIVGYAQFGCGEEAL 461 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~ 461 (634)
..+|..|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346777888888877766544
No 470
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=33.70 E-value=5.1e+02 Score=26.08 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 413 MNGLMDMYVKCGSLGSARELFNFMEDP---DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV 472 (634)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 472 (634)
...|+.-|...|++.+|.+.++++.-| ....+.+++.+.-+.|+-...+.+++..-..|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 356788889999999999999988754 445788899999999988888888888776653
No 471
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.64 E-value=4.5e+02 Score=25.40 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=7.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 036704 489 VGLVEEGLQLYRIMQN 504 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~ 504 (634)
.++.++|.++++++..
T Consensus 88 ~~D~~~al~~Le~i~~ 103 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIE 103 (380)
T ss_pred hccHHHHHHHHHHHHH
Confidence 3345555555554443
No 472
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.52 E-value=1.4e+02 Score=20.30 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=17.0
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHH
Q 036704 54 LCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISA 89 (634)
Q Consensus 54 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (634)
+...|++-+|-++++.+... ...+....+..+|++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~-~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKA-APGPERDFLQGLIQL 43 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCC-T-CCHHHHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHH-CCcchHHHHHHHHHH
Confidence 55566666666666666543 122233344444443
No 473
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.50 E-value=2.1e+02 Score=21.68 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 547 WKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 547 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
.-.|.-.|.+.|+.+.|.+-|+.-....|.+......|
T Consensus 75 HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 75 HAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 33455567777888888777777777777766555444
No 474
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=33.08 E-value=1.3e+02 Score=27.80 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=52.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
+=..+.++++++.|....++. ...| |+.-+..-+-+|.+.|.+..|++-++...+..|+++.+-
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 446778899999999998887 4434 666777778889999999999999999999999877543
No 475
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.57 E-value=3.8e+02 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=18.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVR 473 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~ 473 (634)
+...|+++.|+++.+.++++|..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 45678899999999988888843
No 476
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.47 E-value=39 Score=27.19 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=25.9
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 036704 156 CSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRA 190 (634)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 190 (634)
.-..|.-..|..+|+.|.+.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34567788899999999999999985 5566654
No 477
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.30 E-value=5e+02 Score=25.59 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcC
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFM 436 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (634)
.+.++-.+-..+...|+.+.|.+++++.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555556677777777777766654
No 478
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.26 E-value=59 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=20.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcchhhHHHHH
Q 036704 93 LRSLQLGRKVHDHILSSKCQPDAVLHNHILNM 124 (634)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (634)
.|.-..|..+|..|++.|.+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3455557788888888887776 35555543
No 479
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.00 E-value=4.2e+02 Score=30.76 Aligned_cols=152 Identities=12% Similarity=0.014 Sum_probs=93.9
Q ss_pred HHhcCChHHHHH------HHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHH----HhCCCC--ChhHHHHH
Q 036704 451 YAQFGCGEEALK------LFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQN----EYGIIP--TRERRSCV 518 (634)
Q Consensus 451 ~~~~~~~~~a~~------~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~~l 518 (634)
....|.+.++.+ ++......-.++....|..+...+-+.|+.++|...-.+..- ..|..+ +...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344455555555 555322221234577788888889999999998876443221 013322 33445555
Q ss_pred HHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC---Cchh
Q 036704 519 VDLLARAGRVHEAEDFINQM---------AFDDDI-VVWKSLLASCKTHGNVDVGKRAAENILK-----IDPT---NSAA 580 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~---~~~~ 580 (634)
.-.....++...|...+.+. +..|.. .+...+-..+...++++.|.+..+.+.. ..|+ ....
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55555666777777766654 334544 3445555556667899999999998876 2233 5567
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 036704 581 LVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
+..++..+...+++..|++..+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 7788888888888877665543
No 480
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=31.85 E-value=5e+02 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=20.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 036704 152 MIAGCSQNGQENAAIELYVQMLQSGLMPD 180 (634)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (634)
|+.+. ..|+.+.|+.+++++...|..|.
T Consensus 264 L~~ai-~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 264 FVEYI-IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 44433 44889999999999998887654
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.55 E-value=3.7e+02 Score=23.76 Aligned_cols=62 Identities=10% Similarity=-0.052 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV-TLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
....+.++..+...||++.|-+.|.-+.+.. ..|.. .|..=+..+.+.+.-....+.++.+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 3456778888999999999999999988764 34433 34444444444444443334444444
No 482
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.27 E-value=1.3e+02 Score=28.41 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 540 FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL-LCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 540 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
...|+..|...+.--.+.|.+.+...++.+.+...|.+...|.. ...-|...++++.+..++.+-.+.+-
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 34467777777766677888999999999999999999998876 44557788999999999887666543
No 483
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.77 E-value=2.2e+02 Score=23.60 Aligned_cols=59 Identities=7% Similarity=0.093 Sum_probs=34.6
Q ss_pred HHHCCCCCCHhHHHHHHHHhhc-cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC
Q 036704 366 MLASQTKPDHITFNDVMGACAA-MASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGS 425 (634)
Q Consensus 366 ~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (634)
+.+.|.+++..-. .++..+.. .+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 4455555554432 23333333 34566778888888887777676665555666666554
No 484
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.62 E-value=4.9e+02 Score=24.98 Aligned_cols=142 Identities=12% Similarity=0.063 Sum_probs=78.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHH---hCCCCChhH
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSS-GVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNE---YGIIPTRER 514 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~ 514 (634)
-|...++.|...- ..+.++-.+..++..+. |-.--...+......|++.||.+.|.+.+.+...+ .|.+.|+..
T Consensus 68 ~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf 145 (393)
T KOG0687|consen 68 LDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVF 145 (393)
T ss_pred ccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHH
Confidence 4444445444321 11233333444444433 21222456677788999999999999988876543 255666655
Q ss_pred HHHHHHHH-----HhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchhHHHH
Q 036704 515 RSCVVDLL-----ARAGRVHEAEDFINQMAFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT-NSAALVLL 584 (634)
Q Consensus 515 ~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l 584 (634)
+..-+..+ .-...++.|..++++-+ ..+ -.+|..+- |....++.+|-.+|-..+...-. ....|..+
T Consensus 146 ~~iRlglfy~D~~lV~~~iekak~liE~Gg-DWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~ 222 (393)
T KOG0687|consen 146 YKIRLGLFYLDHDLVTESIEKAKSLIEEGG-DWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETF 222 (393)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhCC-ChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHH
Confidence 44322222 22345677777777763 222 22333332 34567899999988887764332 44445444
Q ss_pred H
Q 036704 585 C 585 (634)
Q Consensus 585 ~ 585 (634)
+
T Consensus 223 v 223 (393)
T KOG0687|consen 223 V 223 (393)
T ss_pred H
Confidence 3
No 485
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.60 E-value=4.8e+02 Score=24.83 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=19.9
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHH
Q 036704 361 RLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIM 402 (634)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 402 (634)
++++.+.+.++.|.-..|.-+.-.+.+.=.+..+..+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444455554444444444444444444555554444
No 486
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.38 E-value=6.1e+02 Score=25.97 Aligned_cols=43 Identities=7% Similarity=-0.070 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 548 KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
....-.|...|+.-.|.+.|.++....-.+|..|..++.+|.-
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3445567788899999999988888888888899999888764
No 487
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.63 E-value=6.3e+02 Score=25.87 Aligned_cols=57 Identities=5% Similarity=-0.099 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHcCC-ChhHHHHHHHHHhhC--CCCC-CHhHHHHHHHHhcCCCChHHHHHH
Q 036704 276 ASWNTIIAGVASCS-NANEAMSLFSEMGDR--ELIP-DGLTVRSLLCACTSPLSLYQGMQI 332 (634)
Q Consensus 276 ~~~~~li~~~~~~g-~~~~A~~~~~~m~~~--g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 332 (634)
.++..|...|+... .+..+..++++..+- +++- .-.....++....-..++..|.+.
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 34556666666655 667777777766542 2221 112223344444555556655554
No 488
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.93 E-value=2.4e+02 Score=20.82 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHH
Q 036704 361 RLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYI 401 (634)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 401 (634)
++|+-....|+..|...|..++....-.=.++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 489
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.92 E-value=8.4e+02 Score=27.13 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=49.8
Q ss_pred chhhHHhhcCChHHHHHHhhcccCCCCccchHHH----HHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhc
Q 036704 17 EYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDL----FSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSS 92 (634)
Q Consensus 17 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (634)
..|..|...|+++.|.+....- |+..+ .+ ...+.+.+++..|.++|..+.+ .|..+.--+..
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~----p~~le-~Vl~~qAdf~f~~k~y~~AA~~yA~t~~---------~FEEVaLKFl~ 428 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR----PDALE-TVLLKQADFLFQDKEYLRAAEIYAETLS---------SFEEVALKFLE 428 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC----HHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHhhh---------hHHHHHHHHHh
Confidence 3588999999999999886554 23343 33 3337778889999988887743 34455444555
Q ss_pred cCChhHHHHHHHHHHH
Q 036704 93 LRSLQLGRKVHDHILS 108 (634)
Q Consensus 93 ~~~~~~a~~~~~~~~~ 108 (634)
..+.+....++.+-++
T Consensus 429 ~~~~~~L~~~L~KKL~ 444 (911)
T KOG2034|consen 429 INQERALRTFLDKKLD 444 (911)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5666544444444333
No 490
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.88 E-value=5e+02 Score=24.44 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=7.5
Q ss_pred cHHHHHHHHHHHHHhC
Q 036704 390 SLEMGTQLHCYIMKTG 405 (634)
Q Consensus 390 ~~~~a~~~~~~~~~~~ 405 (634)
+...|...+..+.+.|
T Consensus 92 ~~~~A~~~~~~~a~~g 107 (292)
T COG0790 92 DKTKAADWYRCAAADG 107 (292)
T ss_pred cHHHHHHHHHHHhhcc
Confidence 3444555555444444
No 491
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.52 E-value=3.4e+02 Score=31.43 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=83.1
Q ss_pred hcccCCHHHHHH------HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CC-CC-CHHHHHH
Q 036704 486 CSHVGLVEEGLQ------LYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--------AF-DD-DIVVWKS 549 (634)
Q Consensus 486 ~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~-~~-~~~~~~~ 549 (634)
....|.+.+|.+ ++...... -.++....|..+...+.+.|+.++|+..-.+. +. .| +...+..
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 334455666665 55533322 22334567888889999999999999887665 22 22 3446666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh--------cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 550 LLASCKTHGNVDVGKRAAENILK--------IDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+...+...++...|...+.++.. ..|+-......+..++...++++.|+++++.+.+.
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 66666677788888888888775 24555556677777777779999999999988863
No 492
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.48 E-value=2.4e+02 Score=24.14 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccC
Q 036704 61 NEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCG 129 (634)
Q Consensus 61 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 129 (634)
+.-.+-+..+.+..|.+++..-. .++..+...++.-.|.++++.+.+.+...+..|-...+..+...|
T Consensus 7 ~~~~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 7 QELLAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 493
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.16 E-value=3.4e+02 Score=29.28 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----------HHHHHHHHhcccCCHHHHHHHHHHHHHHh-CCCCC
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV----------TLVGVLTACSHVGLVEEGLQLYRIMQNEY-GIIPT 511 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~ 511 (634)
+...++-.|....+++..+++.+.+... ||.. .|.-.++---+-|+-++|+...-.+.+.. .+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4555666677777788888888887764 3211 12222222224467777776655555432 34455
Q ss_pred hhHH-----HH--HHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036704 512 RERR-----SC--VVDLLARAGRVHEAEDFINQM-AFDDDIV 545 (634)
Q Consensus 512 ~~~~-----~~--l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 545 (634)
.... .- +-..|...+..+.|.++|++. ..+|...
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 4322 11 112233445566666666666 5555433
No 494
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.11 E-value=1.5e+02 Score=28.62 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=38.8
Q ss_pred ChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 527 RVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
-.++...+++++ ...|+ ...|-.++......|.++..+.+|++++..+..
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 456788888876 44454 457888888888999999999999999886654
No 495
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.02 E-value=2.1e+02 Score=30.24 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHccCChHHHHHHhccCC------CCCccchHHHHHHHHhCCChh------HHHHHHHHHHHCCCCCChhhHHHH
Q 036704 120 HILNMYGKCGSLEDARMVFDEMP------QRNVVSWTAMIAGCSQNGQEN------AAIELYVQMLQSGLMPDQFTFGSI 187 (634)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~~~~~l 187 (634)
+|..+|...|++..+.++++... +.=...||..|+...+.|.++ .+.+++++..-.| |..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Q ss_pred HHHhhcCCCchhHhHHHHHHHH
Q 036704 188 IRACSGLCCVGLGRQLHAHVIK 209 (634)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~ 209 (634)
+.+....-......-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
No 496
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.97 E-value=6.1e+02 Score=25.23 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=40.7
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCHh--HHHHHHHHhc--CCCChHHHHHHHHHHHHh
Q 036704 282 IAGVASCSNANEAMSLFSEMGDRELIPDGL--TVRSLLCACT--SPLSLYQGMQIHSYIIKK 339 (634)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 339 (634)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44566889999999999999887 666554 4455555554 456777888887776654
No 497
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.90 E-value=7.6e+02 Score=26.28 Aligned_cols=273 Identities=8% Similarity=0.084 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCC-ccchHHHHHHHHhCCChhHHHHHHHHHHHC
Q 036704 97 QLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRN-VVSWTAMIAGCSQNGQENAAIELYVQMLQS 175 (634)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (634)
+...++.+.....--.+....+..|++.+... +.+.-.++++++.. . ...+..++.+....|-.....-+.+.+...
T Consensus 292 ~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 292 EVLKHLVQDIASDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q ss_pred CCCC-ChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHH
Q 036704 176 GLMP-DQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMI 254 (634)
Q Consensus 176 g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 254 (634)
.+.+ .....-..+-........+....+++.+......+....+...+-+
T Consensus 370 ~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~----------------------------- 420 (574)
T smart00638 370 KITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLA----------------------------- 420 (574)
T ss_pred CCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHH-----------------------------
Q ss_pred HHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCCh------hHHHHHHHHHhhCCC-CCCHhHHHHHHHHhcCCCChH
Q 036704 255 DGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNA------NEAMSLFSEMGDREL-IPDGLTVRSLLCACTSPLSLY 327 (634)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~ 327 (634)
|..++.-+|..... ++....+.+...... .-|..--...|.+..+.|...
T Consensus 421 -----------------------~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~ 477 (574)
T smart00638 421 -----------------------YGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS 477 (574)
T ss_pred -----------------------HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh
Q ss_pred HHHHHHHHHH-HhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCC
Q 036704 328 QGMQIHSYII-KKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGL 406 (634)
Q Consensus 328 ~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 406 (634)
....+...+. +....+...+ .|+..|+.+.. .....+...++..|.......+ .++..-..-...
T Consensus 478 ~i~~l~~~l~~~~~~~~~iR~----------~Av~Alr~~a~---~~p~~v~~~l~~i~~n~~e~~E-vRiaA~~~lm~t 543 (574)
T smart00638 478 SIKVLEPYLEGAEPLSTFIRL----------AAILALRNLAK---RDPRKVQEVLLPIYLNRAEPPE-VRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHhcCCCCCCCHHHHH----------HHHHHHHHHHH---hCchHHHHHHHHHHcCCCCChH-HHHHHHHHHHhc
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHhcCC
Q 036704 407 ALDVFVMNGLMDMYVKCGSLGSARELFNFME 437 (634)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 437 (634)
.|+......+........+.+=+--++..+.
T Consensus 544 ~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 544 KPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
No 498
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.75 E-value=1.5e+02 Score=20.43 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=33.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH 488 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 488 (634)
|....++.++...++..-.++++..++++...|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4556677777777777778888888888888773 456666555555554
No 499
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.67 E-value=4.8e+02 Score=23.88 Aligned_cols=15 Identities=7% Similarity=0.047 Sum_probs=6.7
Q ss_pred hcCCHHHHHHHHHHH
Q 036704 556 THGNVDVGKRAAENI 570 (634)
Q Consensus 556 ~~g~~~~a~~~~~~~ 570 (634)
....+++|+..+.++
T Consensus 90 ~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRA 104 (284)
T ss_pred hhccccHHHHHHHHH
Confidence 334444444444444
No 500
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.59 E-value=4.8e+02 Score=23.91 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
+..+-.++...|++-++++--.+. ...| +...|-.-..+.+..-+.++|..-+.++++++|.-..+..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 334456677788888888877776 4344 6677777788888888999999999999999996444433
Done!