Query 036704
Match_columns 634
No_of_seqs 577 out of 3328
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 07:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-40 6.2E-45 352.5 36.8 499 22-588 63-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.8E-38 9.6E-43 335.6 33.1 484 56-608 65-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.7E-26 1.3E-30 228.3 41.9 377 153-593 6-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.1E-28 3.7E-33 250.0 16.8 214 63-323 9-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 3.2E-27 1.1E-31 239.3 24.6 202 292-524 7-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.9E-25 1.3E-29 220.8 37.8 357 188-607 6-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 7.1E-23 2.4E-27 212.8 33.6 430 149-608 9-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 4.2E-23 1.4E-27 214.6 30.0 283 216-585 186-490 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.7E-21 5.8E-26 203.6 35.9 436 49-582 30-500 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.8E-21 6.3E-26 198.5 31.5 338 179-603 24-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.3E-20 4.5E-25 192.1 31.6 367 145-597 25-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.4E-20 1.5E-24 192.9 29.0 442 12-543 25-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.5E-18 5E-23 171.0 29.0 325 217-589 4-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 7.4E-18 2.5E-22 165.9 33.0 299 274-608 2-336 (359)
15 3hym_B Cell division cycle pro 99.8 5E-18 1.7E-22 165.0 28.3 220 374-595 89-322 (330)
16 1xi4_A Clathrin heavy chain; a 99.8 8.6E-15 2.9E-19 157.2 51.1 292 277-602 987-1340(1630)
17 3hym_B Cell division cycle pro 99.8 1.4E-17 4.9E-22 161.8 27.3 231 373-607 54-299 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 1.6E-14 5.3E-19 155.3 48.4 442 86-607 1055-1560(1630)
19 1fch_A Peroxisomal targeting s 99.8 2.3E-17 8E-22 163.1 23.6 308 226-605 35-357 (368)
20 2xm6_A Protein corresponding t 99.8 1.7E-15 5.7E-20 155.7 38.0 205 376-590 220-452 (490)
21 2ooe_A Cleavage stimulation fa 99.8 4.5E-15 1.5E-19 154.1 39.1 210 392-607 255-492 (530)
22 1b89_A Protein (clathrin heavy 99.8 2E-16 6.8E-21 152.4 26.0 161 23-207 14-174 (449)
23 2xm6_A Protein corresponding t 99.8 9.3E-15 3.2E-19 150.1 40.5 352 180-609 38-434 (490)
24 1b89_A Protein (clathrin heavy 99.8 8E-17 2.7E-21 155.1 22.7 157 127-333 15-171 (449)
25 4eqf_A PEX5-related protein; a 99.8 6.1E-17 2.1E-21 159.9 21.3 261 274-603 64-352 (365)
26 2ooe_A Cleavage stimulation fa 99.7 5.4E-15 1.8E-19 153.5 34.6 215 358-576 256-495 (530)
27 4g1t_A Interferon-induced prot 99.7 1.3E-15 4.5E-20 156.1 29.2 387 148-618 53-470 (472)
28 1fch_A Peroxisomal targeting s 99.7 1.7E-16 5.8E-21 156.9 20.5 301 56-434 37-354 (368)
29 4eqf_A PEX5-related protein; a 99.7 3.1E-16 1.1E-20 154.7 21.8 231 374-607 64-310 (365)
30 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.8E-20 144.5 24.3 273 282-600 6-287 (291)
31 3cv0_A Peroxisome targeting si 99.7 4.1E-16 1.4E-20 151.2 21.1 230 372-605 52-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 8.9E-16 3E-20 145.2 20.7 242 351-607 10-264 (291)
33 4g1t_A Interferon-induced prot 99.7 2.6E-14 8.9E-19 146.4 26.1 384 79-585 50-471 (472)
34 3uq3_A Heat shock protein STI1 99.6 1.5E-14 5E-19 134.9 21.9 221 375-608 5-237 (258)
35 2pl2_A Hypothetical conserved 99.6 8.5E-15 2.9E-19 132.2 19.2 195 407-605 2-212 (217)
36 3cv0_A Peroxisome targeting si 99.6 2E-14 7E-19 139.2 22.9 230 374-608 20-270 (327)
37 3spa_A Mtrpol, DNA-directed RN 99.6 1.5E-16 5E-21 165.5 6.7 125 114-238 126-258 (1134)
38 3spa_A Mtrpol, DNA-directed RN 99.6 5.3E-16 1.8E-20 161.4 8.0 151 275-455 127-286 (1134)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.9E-13 9.8E-18 127.5 22.5 238 355-601 20-269 (275)
40 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.6E-17 122.7 25.4 224 374-609 5-253 (273)
41 3uq3_A Heat shock protein STI1 99.5 3.4E-13 1.1E-17 125.6 20.1 239 275-586 5-255 (258)
42 3e4b_A ALGK; tetratricopeptide 99.5 3.4E-12 1.2E-16 128.8 28.8 378 86-606 9-420 (452)
43 2q7f_A YRRB protein; TPR, prot 99.5 1.5E-13 5.3E-18 126.6 17.0 191 413-606 26-221 (243)
44 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-13 5.6E-18 126.4 17.0 216 373-592 21-241 (243)
45 3u4t_A TPR repeat-containing p 99.5 7.1E-13 2.4E-17 124.5 21.4 215 374-591 36-268 (272)
46 2ho1_A Type 4 fimbrial biogene 99.5 7E-13 2.4E-17 123.0 21.1 196 410-607 37-238 (252)
47 2vq2_A PILW, putative fimbrial 99.5 1.1E-12 3.8E-17 119.1 21.7 196 410-607 8-211 (225)
48 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-12 3.8E-17 115.0 20.6 165 440-607 4-170 (184)
49 2ho1_A Type 4 fimbrial biogene 99.5 2.2E-12 7.4E-17 119.7 23.6 207 375-584 37-249 (252)
50 3u4t_A TPR repeat-containing p 99.5 7.5E-13 2.5E-17 124.4 20.0 228 376-608 4-251 (272)
51 2vq2_A PILW, putative fimbrial 99.5 3.7E-12 1.3E-16 115.6 23.3 209 373-584 6-222 (225)
52 2h6f_A Protein farnesyltransfe 99.5 6.7E-13 2.3E-17 129.7 18.8 226 376-606 98-347 (382)
53 2pl2_A Hypothetical conserved 99.5 8.3E-13 2.8E-17 119.1 17.5 195 372-571 2-212 (217)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 8.4E-13 2.9E-17 124.2 16.9 219 385-608 15-245 (275)
55 2h6f_A Protein farnesyltransfe 99.5 3.5E-12 1.2E-16 124.6 21.4 215 372-591 128-366 (382)
56 3e4b_A ALGK; tetratricopeptide 99.5 3.3E-11 1.1E-15 121.6 29.1 221 377-609 143-389 (452)
57 4abn_A Tetratricopeptide repea 99.5 8.3E-13 2.8E-17 134.2 16.8 208 391-603 84-317 (474)
58 3sf4_A G-protein-signaling mod 99.5 2.5E-12 8.4E-17 128.7 20.1 298 273-597 7-366 (406)
59 4a1s_A PINS, partner of inscut 99.5 9.5E-13 3.2E-17 132.0 16.7 231 376-606 87-371 (411)
60 1ouv_A Conserved hypothetical 99.5 2.9E-11 9.8E-16 113.6 25.3 191 378-578 41-256 (273)
61 3ro2_A PINS homolog, G-protein 99.4 3.6E-12 1.2E-16 123.7 18.0 232 376-607 44-332 (338)
62 4e6h_A MRNA 3'-END-processing 99.4 1.3E-09 4.5E-14 113.7 37.1 218 358-579 327-576 (679)
63 3sf4_A G-protein-signaling mod 99.4 3E-12 1E-16 128.1 16.7 256 258-538 23-333 (406)
64 3ulq_A Response regulator aspa 99.4 1.2E-11 4E-16 122.7 19.0 225 381-606 109-367 (383)
65 3as5_A MAMA; tetratricopeptide 99.4 3.2E-11 1.1E-15 105.5 18.0 162 444-608 11-174 (186)
66 4e6h_A MRNA 3'-END-processing 99.4 3.8E-09 1.3E-13 110.2 36.3 216 391-608 325-571 (679)
67 3vtx_A MAMA; tetratricopeptide 99.4 2.1E-11 7.1E-16 106.8 16.4 167 409-578 4-175 (184)
68 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-12 4.6E-17 125.2 9.4 233 374-606 26-306 (311)
69 4gyw_A UDP-N-acetylglucosamine 99.4 1.5E-11 5.2E-16 129.9 17.9 161 441-606 9-173 (723)
70 4a1s_A PINS, partner of inscut 99.4 1E-11 3.4E-16 124.5 16.0 273 276-576 49-375 (411)
71 2ond_A Cleavage stimulation fa 99.3 2E-10 6.9E-15 109.7 23.5 217 357-578 33-275 (308)
72 3ro2_A PINS homolog, G-protein 99.3 2E-11 6.9E-16 118.4 16.5 272 277-576 7-335 (338)
73 2ond_A Cleavage stimulation fa 99.3 2.6E-10 8.9E-15 108.9 22.8 211 394-609 35-272 (308)
74 4i17_A Hypothetical protein; T 99.3 1E-10 3.4E-15 106.5 17.4 164 442-608 8-210 (228)
75 4abn_A Tetratricopeptide repea 99.3 6.4E-11 2.2E-15 120.3 16.8 178 426-607 84-287 (474)
76 3as5_A MAMA; tetratricopeptide 99.3 3.5E-10 1.2E-14 98.8 19.2 169 410-581 8-181 (186)
77 3ulq_A Response regulator aspa 99.3 1.5E-10 5.3E-15 114.5 18.5 200 375-574 143-369 (383)
78 4i17_A Hypothetical protein; T 99.2 2.8E-10 9.6E-15 103.4 18.0 206 372-588 4-224 (228)
79 1hz4_A MALT regulatory protein 99.2 3.5E-09 1.2E-13 104.3 26.7 230 377-606 55-321 (373)
80 3q15_A PSP28, response regulat 99.2 2.3E-10 7.8E-15 113.0 17.9 225 381-606 107-364 (378)
81 3nf1_A KLC 1, kinesin light ch 99.2 6.5E-11 2.2E-15 113.4 11.1 201 376-576 70-310 (311)
82 3q15_A PSP28, response regulat 99.2 5.4E-09 1.8E-13 103.1 23.8 197 376-573 142-365 (378)
83 3edt_B KLC 2, kinesin light ch 99.1 5.6E-10 1.9E-14 105.1 14.3 221 386-606 12-280 (283)
84 1qqe_A Vesicular transport pro 99.1 2.9E-09 1E-13 100.6 18.2 194 384-577 46-273 (292)
85 2fo7_A Synthetic consensus TPR 99.1 3E-09 1E-13 87.2 15.4 127 479-607 4-132 (136)
86 1qqe_A Vesicular transport pro 99.1 2E-09 6.9E-14 101.8 16.1 201 390-605 32-267 (292)
87 2yhc_A BAMD, UPF0169 lipoprote 99.1 1E-08 3.5E-13 92.7 20.1 181 410-610 4-216 (225)
88 4ga2_A E3 SUMO-protein ligase 99.1 1.7E-10 5.9E-15 96.7 7.4 142 448-593 4-149 (150)
89 3mv2_B Coatomer subunit epsilo 99.1 1.3E-08 4.5E-13 94.0 19.9 174 429-607 85-282 (310)
90 1hz4_A MALT regulatory protein 99.1 1.9E-08 6.6E-13 99.0 22.6 227 380-606 19-281 (373)
91 3qky_A Outer membrane assembly 99.1 4.9E-09 1.7E-13 97.4 16.8 180 410-607 15-224 (261)
92 4gyw_A UDP-N-acetylglucosamine 99.0 1.4E-09 4.8E-14 114.9 14.0 162 409-575 8-176 (723)
93 3qky_A Outer membrane assembly 99.0 6.2E-09 2.1E-13 96.7 16.4 204 372-596 12-250 (261)
94 3rjv_A Putative SEL1 repeat pr 99.0 3.1E-08 1.1E-12 88.4 19.7 162 439-609 16-199 (212)
95 3qou_A Protein YBBN; thioredox 99.0 6.1E-09 2.1E-13 98.0 15.6 173 430-606 106-283 (287)
96 2fo7_A Synthetic consensus TPR 99.0 1.6E-08 5.3E-13 82.8 16.0 132 443-577 3-136 (136)
97 3edt_B KLC 2, kinesin light ch 99.0 6.2E-09 2.1E-13 97.8 15.3 216 358-573 26-281 (283)
98 2pzi_A Probable serine/threoni 99.0 2.9E-09 1E-13 113.2 13.8 168 421-593 402-583 (681)
99 3mv2_B Coatomer subunit epsilo 99.0 3.1E-08 1.1E-12 91.5 18.4 182 394-583 85-292 (310)
100 2r5s_A Uncharacterized protein 99.0 4.4E-09 1.5E-13 91.0 11.5 157 446-606 11-172 (176)
101 2vsy_A XCC0866; transferase, g 98.9 1.4E-08 4.8E-13 106.1 16.8 160 423-585 2-169 (568)
102 4ga2_A E3 SUMO-protein ligase 98.9 1.7E-09 5.7E-14 90.6 6.7 123 482-607 3-129 (150)
103 3gyz_A Chaperone protein IPGC; 98.9 1.3E-08 4.5E-13 84.6 11.6 97 512-608 36-134 (151)
104 3u3w_A Transcriptional activat 98.9 2.5E-07 8.5E-12 87.4 20.6 161 446-606 80-265 (293)
105 2ifu_A Gamma-SNAP; membrane fu 98.9 9.4E-08 3.2E-12 91.0 17.6 217 355-600 6-254 (307)
106 3urz_A Uncharacterized protein 98.8 5.3E-08 1.8E-12 86.7 14.3 179 379-577 8-190 (208)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.8 9.4E-08 3.2E-12 85.5 15.7 123 481-608 11-151 (213)
108 4gco_A Protein STI-1; structur 98.8 4.4E-08 1.5E-12 78.9 12.0 92 515-606 16-109 (126)
109 4gco_A Protein STI-1; structur 98.8 4.4E-08 1.5E-12 78.9 12.0 113 473-587 9-124 (126)
110 2vgx_A Chaperone SYCD; alterna 98.8 1.6E-08 5.4E-13 84.3 9.5 95 512-606 21-117 (148)
111 2qfc_A PLCR protein; TPR, HTH, 98.8 1.5E-07 5.1E-12 88.9 17.2 163 443-605 77-264 (293)
112 2vsy_A XCC0866; transferase, g 98.8 8.8E-08 3E-12 100.1 17.0 146 389-538 3-154 (568)
113 3dra_A Protein farnesyltransfe 98.8 7.9E-07 2.7E-11 83.1 21.6 214 389-606 47-286 (306)
114 2pzi_A Probable serine/threoni 98.8 1.4E-07 5E-12 100.2 18.7 189 386-579 402-608 (681)
115 1a17_A Serine/threonine protei 98.8 1.2E-07 4.2E-12 80.7 14.2 128 477-606 14-145 (166)
116 2uy1_A Cleavage stimulation fa 98.8 8.8E-06 3E-10 82.4 29.6 202 358-572 197-412 (493)
117 3qou_A Protein YBBN; thioredox 98.8 3.4E-07 1.1E-11 86.1 18.0 164 372-537 114-280 (287)
118 2yhc_A BAMD, UPF0169 lipoprote 98.7 4.3E-07 1.5E-11 81.9 17.1 185 374-579 3-219 (225)
119 3urz_A Uncharacterized protein 98.7 1.9E-07 6.6E-12 83.0 14.6 157 447-608 10-187 (208)
120 3rjv_A Putative SEL1 repeat pr 98.7 5.3E-07 1.8E-11 80.4 17.4 172 394-575 5-199 (212)
121 1na0_A Designed protein CTPR3; 98.7 2.6E-07 8.8E-12 74.1 13.6 115 476-592 9-125 (125)
122 2lni_A Stress-induced-phosphop 98.7 2E-07 6.9E-12 75.9 12.6 116 476-593 16-133 (133)
123 2vyi_A SGTA protein; chaperone 98.7 2E-07 6.7E-12 75.6 12.5 117 476-594 12-130 (131)
124 2r5s_A Uncharacterized protein 98.7 2.7E-07 9.2E-12 79.6 13.8 154 414-572 10-172 (176)
125 2e2e_A Formate-dependent nitri 98.7 8E-08 2.7E-12 83.1 10.4 123 453-578 22-149 (177)
126 3dra_A Protein farnesyltransfe 98.7 1.2E-05 4E-10 75.2 25.6 227 355-586 48-301 (306)
127 2xcb_A PCRH, regulatory protei 98.7 1.7E-07 5.9E-12 77.4 11.7 91 516-606 22-114 (142)
128 2ifu_A Gamma-SNAP; membrane fu 98.7 1.2E-07 3.9E-12 90.4 12.0 196 387-605 3-222 (307)
129 2uy1_A Cleavage stimulation fa 98.7 1.5E-05 5.3E-10 80.6 28.0 202 391-606 195-412 (493)
130 3upv_A Heat shock protein STI1 98.7 2E-07 6.7E-12 75.2 11.4 94 514-607 6-101 (126)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1E-06 3.5E-11 78.6 17.3 145 413-577 9-154 (213)
132 1p5q_A FKBP52, FK506-binding p 98.7 1.9E-07 6.6E-12 89.9 13.1 94 512-605 196-292 (336)
133 2kck_A TPR repeat; tetratricop 98.7 2.4E-07 8.2E-12 72.7 11.4 99 511-609 5-108 (112)
134 1hxi_A PEX5, peroxisome target 98.6 1.8E-07 6E-12 74.8 9.7 95 514-608 19-115 (121)
135 3u3w_A Transcriptional activat 98.6 4.1E-06 1.4E-10 79.0 20.3 201 363-572 34-265 (293)
136 2c2l_A CHIP, carboxy terminus 98.6 1.2E-07 4.3E-12 88.7 9.6 192 410-607 4-199 (281)
137 3q49_B STIP1 homology and U bo 98.6 5.8E-07 2E-11 73.6 12.4 96 511-606 8-105 (137)
138 3gyz_A Chaperone protein IPGC; 98.6 5.8E-07 2E-11 74.6 12.2 104 473-578 32-138 (151)
139 3sz7_A HSC70 cochaperone (SGT) 98.6 4.1E-07 1.4E-11 77.3 11.3 110 475-586 10-121 (164)
140 4gcn_A Protein STI-1; structur 98.6 1.9E-07 6.4E-12 75.4 8.3 93 514-606 10-111 (127)
141 2vgx_A Chaperone SYCD; alterna 98.5 3.2E-07 1.1E-11 76.3 9.6 117 463-583 9-128 (148)
142 2qfc_A PLCR protein; TPR, HTH, 98.5 3.8E-06 1.3E-10 79.2 18.2 161 412-572 77-265 (293)
143 1elw_A TPR1-domain of HOP; HOP 98.5 9.2E-07 3.2E-11 70.0 12.0 92 515-606 7-100 (118)
144 2lni_A Stress-induced-phosphop 98.5 8.5E-07 2.9E-11 72.0 12.0 98 511-608 15-114 (133)
145 2fbn_A 70 kDa peptidylprolyl i 98.5 7.6E-07 2.6E-11 78.4 12.4 96 513-608 89-187 (198)
146 4f3v_A ESX-1 secretion system 98.5 5.3E-07 1.8E-11 82.2 11.1 191 387-584 18-247 (282)
147 3gw4_A Uncharacterized protein 98.5 2.5E-06 8.6E-11 75.3 15.5 153 453-606 4-175 (203)
148 1elw_A TPR1-domain of HOP; HOP 98.5 1.8E-06 6E-11 68.3 13.0 111 476-588 4-116 (118)
149 1na0_A Designed protein CTPR3; 98.5 1.3E-06 4.4E-11 69.9 12.0 97 512-608 9-107 (125)
150 2dba_A Smooth muscle cell asso 98.5 1.6E-06 5.4E-11 72.0 12.8 109 476-587 28-142 (148)
151 4f3v_A ESX-1 secretion system 98.5 2.1E-06 7E-11 78.3 14.1 182 422-608 18-238 (282)
152 2dba_A Smooth muscle cell asso 98.5 3E-06 1E-10 70.3 14.3 99 510-608 26-129 (148)
153 2hr2_A Hypothetical protein; a 98.5 6E-07 2E-11 73.6 9.4 90 517-606 16-130 (159)
154 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.9E-11 75.7 11.9 122 486-609 20-146 (177)
155 3upv_A Heat shock protein STI1 98.4 2.7E-06 9.4E-11 68.4 12.3 112 476-589 4-123 (126)
156 2xcb_A PCRH, regulatory protei 98.4 1.5E-06 5E-11 71.8 10.6 108 476-585 18-127 (142)
157 2vyi_A SGTA protein; chaperone 98.4 2.1E-06 7.2E-11 69.3 11.4 98 511-608 11-110 (131)
158 3q7a_A Farnesyltransferase alp 98.4 2.5E-05 8.5E-10 73.8 19.9 214 389-606 68-330 (349)
159 3gw4_A Uncharacterized protein 98.4 2.2E-06 7.5E-11 75.7 12.3 152 422-573 4-176 (203)
160 3sz7_A HSC70 cochaperone (SGT) 98.4 3E-06 1E-10 71.9 12.5 95 512-606 11-107 (164)
161 3q7a_A Farnesyltransferase alp 98.4 0.0002 7E-09 67.5 25.2 228 355-587 69-346 (349)
162 2xev_A YBGF; tetratricopeptide 98.4 1.4E-06 4.8E-11 70.4 9.2 98 482-581 8-113 (129)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 4E-06 1.4E-10 84.4 14.3 142 442-605 269-413 (457)
164 1a17_A Serine/threonine protei 98.4 6.6E-06 2.3E-10 69.7 13.8 127 443-572 15-145 (166)
165 3k9i_A BH0479 protein; putativ 98.4 4.7E-07 1.6E-11 71.8 5.9 82 525-606 3-89 (117)
166 3q49_B STIP1 homology and U bo 98.4 3.5E-06 1.2E-10 68.8 11.3 113 474-588 7-126 (137)
167 3rkv_A Putative peptidylprolyl 98.3 2.2E-06 7.4E-11 72.6 9.6 103 476-578 11-131 (162)
168 1elr_A TPR2A-domain of HOP; HO 98.3 2.6E-06 8.9E-11 68.8 9.7 96 513-608 5-109 (131)
169 1wao_1 Serine/threonine protei 98.3 1.9E-06 6.4E-11 87.2 10.2 118 483-602 13-134 (477)
170 3ro3_A PINS homolog, G-protein 98.3 5.7E-06 2E-10 69.7 11.6 129 478-606 11-157 (164)
171 2c2l_A CHIP, carboxy terminus 98.3 6.1E-06 2.1E-10 77.1 12.4 111 475-587 3-115 (281)
172 2if4_A ATFKBP42; FKBP-like, al 98.3 1.9E-06 6.5E-11 82.9 9.0 147 442-608 180-329 (338)
173 2kck_A TPR repeat; tetratricop 98.3 8E-06 2.7E-10 63.7 11.1 101 476-578 6-111 (112)
174 1elr_A TPR2A-domain of HOP; HO 98.3 9.5E-06 3.2E-10 65.4 11.6 109 478-589 6-123 (131)
175 4b4t_Q 26S proteasome regulato 98.3 1.8E-05 6.1E-10 79.4 16.0 162 444-605 58-243 (434)
176 2xev_A YBGF; tetratricopeptide 98.2 2.4E-05 8.3E-10 62.9 13.5 93 516-608 6-106 (129)
177 1ihg_A Cyclophilin 40; ppiase 98.2 7.2E-06 2.5E-10 79.7 11.5 90 511-600 272-363 (370)
178 3n71_A Histone lysine methyltr 98.2 7.2E-06 2.5E-10 82.2 11.2 124 486-609 319-466 (490)
179 1hxi_A PEX5, peroxisome target 98.2 9.1E-06 3.1E-10 64.6 9.7 98 479-578 20-119 (121)
180 2fbn_A 70 kDa peptidylprolyl i 98.2 1.4E-05 4.8E-10 70.2 11.8 94 514-607 40-151 (198)
181 3dss_A Geranylgeranyl transfer 98.1 0.00035 1.2E-08 65.6 21.0 178 426-606 90-303 (331)
182 1p5q_A FKBP52, FK506-binding p 98.1 3.3E-05 1.1E-09 74.1 14.4 130 441-572 147-293 (336)
183 4gcn_A Protein STI-1; structur 98.1 3.6E-05 1.2E-09 61.7 12.1 104 444-575 11-114 (127)
184 2l6j_A TPR repeat-containing p 98.1 1.2E-06 4.2E-11 68.5 3.2 93 511-603 3-103 (111)
185 3dss_A Geranylgeranyl transfer 98.1 0.00087 3E-08 63.0 22.9 228 356-589 46-320 (331)
186 3rkv_A Putative peptidylprolyl 98.1 8.3E-06 2.8E-10 68.9 8.4 93 515-607 14-126 (162)
187 3ma5_A Tetratricopeptide repea 98.1 1.6E-05 5.6E-10 60.6 9.2 65 543-607 6-70 (100)
188 4b4t_Q 26S proteasome regulato 98.1 6.2E-05 2.1E-09 75.4 15.8 159 448-606 11-203 (434)
189 2kat_A Uncharacterized protein 98.1 1.4E-05 4.8E-10 62.9 8.8 76 531-606 4-81 (115)
190 3lvg_A Clathrin heavy chain 1; 98.1 6.2E-06 2.1E-10 78.8 7.4 217 8-244 50-290 (624)
191 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.6E-10 66.3 9.9 132 443-574 11-159 (164)
192 3k9i_A BH0479 protein; putativ 98.1 5.5E-06 1.9E-10 65.5 5.9 93 489-582 3-99 (117)
193 2hr2_A Hypothetical protein; a 98.0 6.2E-06 2.1E-10 67.6 6.2 106 481-586 16-144 (159)
194 1dce_A Protein (RAB geranylger 98.0 0.00015 5E-09 74.7 17.8 168 426-596 45-244 (567)
195 1wao_1 Serine/threonine protei 98.0 1.9E-05 6.5E-10 79.8 10.8 115 419-536 15-134 (477)
196 1na3_A Designed protein CTPR2; 98.0 3E-05 1E-09 57.7 8.9 81 512-592 9-91 (91)
197 1ihg_A Cyclophilin 40; ppiase 98.0 2.4E-05 8.3E-10 76.0 9.7 114 476-608 223-337 (370)
198 3bee_A Putative YFRE protein; 97.9 6.7E-05 2.3E-09 55.8 9.8 70 541-610 3-75 (93)
199 2if4_A ATFKBP42; FKBP-like, al 97.9 1.9E-05 6.4E-10 75.9 8.5 116 476-608 179-294 (338)
200 1klx_A Cysteine rich protein B 97.9 9.8E-05 3.4E-09 60.1 11.6 112 490-609 9-128 (138)
201 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 7.7E-05 2.6E-09 75.0 12.8 65 544-608 317-381 (457)
202 1zu2_A Mitochondrial import re 97.9 1E-05 3.5E-10 66.2 4.7 85 524-608 14-121 (158)
203 2l6j_A TPR repeat-containing p 97.8 8.6E-05 3E-09 57.6 8.6 66 543-608 3-68 (111)
204 1zu2_A Mitochondrial import re 97.6 0.00012 4.3E-09 59.7 7.4 111 489-608 15-148 (158)
205 1na3_A Designed protein CTPR2; 97.6 0.00019 6.4E-09 53.2 8.1 66 543-608 8-73 (91)
206 3n71_A Histone lysine methyltr 97.6 0.00011 3.7E-09 73.7 8.3 87 520-606 317-421 (490)
207 1dce_A Protein (RAB geranylger 97.6 0.0012 4.1E-08 67.9 16.0 150 454-607 42-221 (567)
208 3qww_A SET and MYND domain-con 97.6 0.0001 3.5E-09 72.6 7.4 61 545-605 341-409 (433)
209 2kat_A Uncharacterized protein 97.5 0.00055 1.9E-08 53.5 9.2 80 495-576 4-85 (115)
210 1klx_A Cysteine rich protein B 97.5 0.0023 7.7E-08 51.9 12.8 113 454-575 8-128 (138)
211 3qwp_A SET and MYND domain-con 97.5 0.00024 8.2E-09 70.1 8.1 99 483-581 294-413 (429)
212 2kc7_A BFR218_protein; tetratr 97.4 0.00025 8.7E-09 53.6 6.5 79 518-604 6-87 (99)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00055 1.9E-08 51.7 7.5 60 549-608 5-65 (99)
214 3lvg_A Clathrin heavy chain 1; 97.3 2.1E-06 7E-11 82.0 -7.9 200 114-334 53-253 (624)
215 3ma5_A Tetratricopeptide repea 97.3 0.00057 2E-08 51.8 6.5 66 511-576 6-73 (100)
216 3qww_A SET and MYND domain-con 97.2 0.0017 6E-08 63.8 11.1 95 488-582 310-425 (433)
217 3ly7_A Transcriptional activat 97.2 0.012 4.2E-07 55.4 16.0 137 439-577 192-343 (372)
218 3qwp_A SET and MYND domain-con 97.1 0.0033 1.1E-07 62.0 11.7 87 520-606 295-399 (429)
219 1wy6_A Hypothetical protein ST 97.1 0.063 2.2E-06 41.5 16.8 148 444-610 8-157 (172)
220 3u64_A Protein TP_0956; tetrat 97.1 0.0022 7.6E-08 57.7 9.1 87 528-614 179-276 (301)
221 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0061 2.1E-07 46.3 9.6 73 513-585 6-87 (104)
222 1pc2_A Mitochondria fission pr 96.8 0.0075 2.6E-07 48.7 9.0 92 491-584 13-111 (152)
223 1pc2_A Mitochondria fission pr 96.7 0.0047 1.6E-07 49.8 7.5 80 528-607 14-100 (152)
224 3ly7_A Transcriptional activat 96.6 0.019 6.6E-07 54.1 12.2 132 473-608 191-340 (372)
225 3bee_A Putative YFRE protein; 96.4 0.033 1.1E-06 41.0 9.7 69 509-577 3-76 (93)
226 1nzn_A CGI-135 protein, fissio 96.1 0.094 3.2E-06 40.6 11.1 93 490-584 15-114 (126)
227 2v5f_A Prolyl 4-hydroxylase su 96.1 0.025 8.7E-07 42.8 8.0 65 543-607 4-75 (104)
228 3mkq_A Coatomer beta'-subunit; 95.7 0.072 2.5E-06 57.9 13.0 130 414-570 633-762 (814)
229 4ady_A RPN2, 26S proteasome re 95.7 2.8 9.7E-05 44.9 32.5 168 383-556 498-673 (963)
230 1qsa_A Protein (soluble lytic 95.5 2.6 9E-05 43.3 25.0 261 280-572 77-347 (618)
231 3mkq_A Coatomer beta'-subunit; 95.2 0.33 1.1E-05 52.6 15.8 131 378-538 632-762 (814)
232 3mkq_B Coatomer subunit alpha; 95.1 1.1 3.9E-05 37.0 14.8 102 420-539 15-116 (177)
233 1wy6_A Hypothetical protein ST 94.9 0.98 3.4E-05 35.1 12.6 65 442-508 92-156 (172)
234 4h7y_A Dual specificity protei 94.9 0.2 6.7E-06 39.8 9.1 109 475-585 12-135 (161)
235 4gns_B Protein CSD3, chitin bi 94.8 0.28 9.7E-06 51.3 12.9 60 546-605 339-398 (754)
236 3mkq_B Coatomer subunit alpha; 94.8 1.1 3.7E-05 37.1 13.8 129 448-604 12-141 (177)
237 1nzn_A CGI-135 protein, fissio 94.6 0.12 4.1E-06 40.0 7.2 81 527-607 16-103 (126)
238 3u64_A Protein TP_0956; tetrat 94.6 0.065 2.2E-06 48.4 6.5 105 492-605 179-296 (301)
239 4h7y_A Dual specificity protei 94.4 0.43 1.5E-05 37.9 10.0 97 439-538 11-120 (161)
240 1y8m_A FIS1; mitochondria, unk 93.3 0.95 3.2E-05 35.7 10.1 78 507-584 34-117 (144)
241 2ff4_A Probable regulatory pro 92.5 0.34 1.2E-05 46.9 8.2 58 548-605 175-232 (388)
242 3o48_A Mitochondria fission 1 92.3 0.46 1.6E-05 36.9 7.0 76 509-584 37-118 (134)
243 1y8m_A FIS1; mitochondria, unk 92.2 2.7 9.3E-05 33.1 11.4 66 541-606 36-105 (144)
244 3o48_A Mitochondria fission 1 91.6 1.7 6E-05 33.7 9.5 65 542-606 38-106 (134)
245 3ffl_A Anaphase-promoting comp 91.6 1.8 6.1E-05 35.2 10.0 124 470-605 12-149 (167)
246 4ady_A RPN2, 26S proteasome re 91.5 17 0.0006 39.0 33.7 250 318-572 382-657 (963)
247 1v54_E Cytochrome C oxidase po 91.1 2.8 9.6E-05 30.6 9.3 60 527-586 25-87 (109)
248 2wpv_A GET4, UPF0363 protein Y 91.0 7.4 0.00025 35.8 14.9 167 116-302 34-215 (312)
249 3txn_A 26S proteasome regulato 90.9 9.6 0.00033 36.5 16.2 27 411-437 20-46 (394)
250 3ffl_A Anaphase-promoting comp 89.2 2.1 7.1E-05 34.8 8.4 22 517-538 127-148 (167)
251 3esl_A Checkpoint serine/threo 86.8 6.6 0.00023 33.1 10.3 49 525-573 92-144 (202)
252 2y69_E Cytochrome C oxidase su 86.4 7.3 0.00025 30.2 9.3 57 530-586 71-130 (152)
253 1zbp_A Hypothetical protein VP 86.3 1.7 6E-05 38.5 6.9 59 520-578 5-65 (273)
254 1v54_E Cytochrome C oxidase po 86.1 4.4 0.00015 29.5 7.6 63 456-520 25-87 (109)
255 1qsa_A Protein (soluble lytic 86.1 33 0.0011 35.2 33.6 405 53-497 15-434 (618)
256 4gns_B Protein CSD3, chitin bi 85.6 11 0.00038 39.5 13.7 52 486-539 347-398 (754)
257 4fhn_B Nucleoporin NUP120; pro 85.4 27 0.00093 39.2 17.9 52 381-437 818-869 (1139)
258 2uwj_G Type III export protein 85.3 6.4 0.00022 28.5 8.0 87 94-185 20-106 (115)
259 4fhn_B Nucleoporin NUP120; pro 85.2 7.8 0.00027 43.6 13.4 120 118-239 902-1043(1139)
260 1zbp_A Hypothetical protein VP 84.7 10 0.00036 33.7 11.0 52 451-503 7-58 (273)
261 4b4t_P 26S proteasome regulato 84.5 32 0.0011 33.7 20.2 185 353-538 29-244 (445)
262 2ff4_A Probable regulatory pro 84.4 7.1 0.00024 37.6 11.1 71 444-515 174-248 (388)
263 2p58_C Putative type III secre 83.7 6.9 0.00023 28.4 7.6 87 94-185 21-107 (116)
264 2uwj_G Type III export protein 82.4 12 0.00041 27.1 9.6 87 390-481 21-107 (115)
265 4a1g_A Mitotic checkpoint seri 82.1 12 0.00042 29.9 9.6 49 563-611 84-134 (152)
266 3txn_A 26S proteasome regulato 82.1 36 0.0012 32.5 16.3 164 375-538 19-207 (394)
267 2p58_C Putative type III secre 81.7 13 0.00044 27.0 10.2 87 389-480 21-107 (116)
268 2wpv_A GET4, UPF0363 protein Y 80.7 35 0.0012 31.3 20.9 130 361-505 78-217 (312)
269 2y69_E Cytochrome C oxidase su 79.8 11 0.00037 29.3 7.9 61 458-520 70-130 (152)
270 4b4t_R RPN7, 26S proteasome re 77.6 14 0.00048 36.1 10.6 60 478-538 133-194 (429)
271 2wvi_A Mitotic checkpoint seri 77.5 18 0.00061 29.4 9.3 29 544-572 96-124 (164)
272 4b4t_P 26S proteasome regulato 77.4 56 0.0019 31.9 22.3 184 389-572 30-246 (445)
273 3ltm_A Alpha-REP4; protein eng 76.7 34 0.0012 29.0 14.9 147 49-209 38-184 (211)
274 3lpz_A GET4 (YOR164C homolog); 74.6 54 0.0018 30.4 23.0 170 278-504 38-215 (336)
275 4b4t_R RPN7, 26S proteasome re 71.9 36 0.0012 33.1 11.9 94 412-505 133-237 (429)
276 3lpz_A GET4 (YOR164C homolog); 71.9 63 0.0022 29.9 24.1 167 412-606 37-215 (336)
277 2qx5_A Nucleoporin NIC96; mRNA 69.6 1.1E+02 0.0037 31.7 17.3 45 276-322 154-198 (661)
278 1bpo_A Protein (clathrin); cla 66.1 52 0.0018 31.9 10.8 141 25-172 342-482 (494)
279 4aez_C MAD3, mitotic spindle c 60.3 25 0.00086 30.2 7.0 75 497-574 98-180 (223)
280 3ltm_A Alpha-REP4; protein eng 55.9 91 0.0031 26.2 18.3 153 409-572 32-184 (211)
281 3esl_A Checkpoint serine/threo 54.9 96 0.0033 26.1 10.3 55 455-510 93-148 (202)
282 3ltj_A Alpharep-4; protein eng 54.6 93 0.0032 25.9 15.4 164 415-591 33-196 (201)
283 3mv2_A Coatomer subunit alpha; 53.5 1.4E+02 0.0046 27.4 12.0 60 535-608 196-257 (325)
284 3ltj_A Alpharep-4; protein eng 53.4 97 0.0033 25.8 18.9 48 409-456 58-105 (201)
285 3bqo_A Telomeric repeat-bindin 53.2 72 0.0025 26.6 8.1 68 528-595 94-168 (211)
286 4b4t_S RPN3, 26S proteasome re 51.7 49 0.0017 32.8 8.3 59 476-538 231-296 (523)
287 1k1a_A B-cell lymphoma 3-encod 47.6 1.3E+02 0.0045 25.6 11.3 23 50-72 12-34 (241)
288 2zu6_B Programmed cell death p 44.8 1.8E+02 0.0063 26.5 11.5 64 546-609 168-233 (307)
289 3kea_A K1L; tropism, ANK repea 44.3 1.7E+02 0.0059 26.0 12.0 17 296-312 209-225 (285)
290 4b4t_S RPN3, 26S proteasome re 42.6 47 0.0016 32.9 6.7 62 544-607 231-299 (523)
291 3jxi_A Vanilloid receptor-rela 42.4 1.2E+02 0.004 26.5 9.2 93 49-143 7-118 (260)
292 1ya0_A SMG-7 transcript varian 42.3 83 0.0028 31.2 8.5 41 559-599 167-207 (497)
293 1wdy_A 2-5A-dependent ribonucl 41.4 1.8E+02 0.0062 25.4 11.6 215 84-334 6-240 (285)
294 4gq2_M Nucleoporin NUP120; bet 40.5 1.9E+02 0.0064 31.6 11.8 27 546-572 899-925 (950)
295 3eiq_C Programmed cell death p 38.6 2.5E+02 0.0086 26.3 14.4 66 413-478 220-290 (358)
296 2d2s_A Exocyst complex compone 37.3 94 0.0032 27.1 7.2 29 213-241 88-116 (235)
297 2nsz_A Programmed cell death p 36.1 1.2E+02 0.0042 23.3 7.0 66 220-310 11-78 (129)
298 3bu8_A Telomeric repeat-bindin 35.0 1.2E+02 0.0042 25.7 6.9 53 492-544 88-147 (235)
299 4ets_A Ferric uptake regulatio 34.9 81 0.0028 25.5 6.0 72 60-132 13-86 (162)
300 2lwd_A Probable ATP-dependent 34.9 20 0.00069 26.2 2.1 47 13-59 44-90 (100)
301 1k1a_A B-cell lymphoma 3-encod 34.5 2.1E+02 0.0073 24.2 11.9 19 19-37 13-31 (241)
302 4a1g_A Mitotic checkpoint seri 34.3 1.8E+02 0.006 23.2 9.9 53 458-511 82-135 (152)
303 2d2s_A Exocyst complex compone 34.3 1.4E+02 0.0049 25.9 7.9 89 446-538 23-117 (235)
304 3eiq_C Programmed cell death p 32.6 3.1E+02 0.011 25.6 14.7 64 546-609 219-284 (358)
305 4aez_C MAD3, mitotic spindle c 32.0 2.3E+02 0.0079 24.3 8.4 52 458-510 131-183 (223)
306 1mzb_A Ferric uptake regulatio 31.9 1.6E+02 0.0056 22.7 7.2 62 171-233 8-70 (136)
307 2w57_A Ferric uptake regulatio 31.2 1.7E+02 0.0058 23.1 7.3 63 170-233 6-69 (150)
308 2fe3_A Peroxide operon regulat 31.1 1.8E+02 0.006 22.9 7.4 63 170-233 11-73 (145)
309 2xig_A Ferric uptake regulatio 30.7 1.7E+02 0.0059 23.1 7.3 64 169-233 15-78 (150)
310 3hra_A Ankyrin repeat family p 30.3 2.2E+02 0.0077 23.2 9.8 13 24-36 14-26 (201)
311 3ygs_P Procaspase 9; apoptosis 30.2 50 0.0017 23.9 3.6 32 27-59 52-83 (97)
312 2ion_A PDCD4, programmed cell 29.4 99 0.0034 24.7 5.6 65 220-309 13-79 (152)
313 2wvi_A Mitotic checkpoint seri 27.7 2.4E+02 0.0083 22.8 10.1 53 459-512 78-131 (164)
314 4gq2_M Nucleoporin NUP120; bet 27.6 2.3E+02 0.008 30.9 9.9 53 18-72 816-868 (950)
315 2ion_A PDCD4, programmed cell 26.4 2.4E+02 0.0084 22.4 8.2 63 413-475 12-79 (152)
316 3eu9_A Huntingtin-interacting 25.3 2.3E+02 0.0078 23.9 8.0 14 126-139 84-97 (240)
317 3mkr_B Coatomer subunit alpha; 24.8 4E+02 0.014 24.3 9.5 61 534-608 186-248 (320)
318 2fu4_A Ferric uptake regulatio 24.3 1.7E+02 0.0059 19.9 7.3 62 170-232 6-68 (83)
319 2crb_A Nuclear receptor bindin 23.9 98 0.0033 22.1 3.8 21 549-569 20-40 (97)
320 2zu6_B Programmed cell death p 23.9 4.1E+02 0.014 24.1 13.3 62 413-474 169-235 (307)
321 2ijq_A Hypothetical protein; s 23.0 1.9E+02 0.0064 23.4 6.0 61 48-109 36-104 (161)
322 1ug3_A EIF4GI, eukaryotic prot 22.3 4.7E+02 0.016 24.2 12.4 66 278-344 14-80 (339)
323 2fe3_A Peroxide operon regulat 22.2 2E+02 0.0068 22.5 6.2 47 149-195 24-70 (145)
324 4ets_A Ferric uptake regulatio 21.9 3.1E+02 0.011 22.0 8.1 70 163-233 14-86 (162)
325 2nsz_A Programmed cell death p 21.8 2.7E+02 0.0093 21.3 9.5 63 413-475 10-77 (129)
326 1bpo_A Protein (clathrin); cla 21.7 5.7E+02 0.019 24.9 11.1 138 389-539 343-483 (494)
327 3eyy_A Putative iron uptake re 21.7 1.7E+02 0.0058 23.0 5.6 61 170-232 8-68 (145)
328 2pm7_A Protein WEB1, protein t 21.5 5.3E+02 0.018 24.5 10.8 25 580-604 338-362 (399)
329 1n11_A Ankyrin; clathrin, BAND 21.2 5.3E+02 0.018 24.4 11.7 346 85-475 16-371 (437)
330 3jxi_A Vanilloid receptor-rela 20.8 2.2E+02 0.0074 24.7 7.0 54 87-140 9-71 (260)
331 2cfu_A SDSA1; SDS-hydrolase, l 20.5 2E+02 0.0069 29.7 7.3 63 528-593 436-498 (658)
332 3mwm_A ZUR, putative metal upt 20.1 1.2E+02 0.0043 23.6 4.5 47 85-131 18-64 (139)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-40 Score=352.47 Aligned_cols=499 Identities=9% Similarity=-0.074 Sum_probs=334.8
Q ss_pred HhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHH
Q 036704 22 FELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRK 101 (634)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (634)
+...|....+...++..+.+++..|+ .++..+.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|+++.|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLR-LWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp -------------------CHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHH-HHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 44567777888888888777777887 899999999999999999999985 35677889999999999999999999
Q ss_pred HHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCC-------------------CccchHHHHHHHHhCCCh
Q 036704 102 VHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQR-------------------NVVSWTAMIAGCSQNGQE 162 (634)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~ 162 (634)
+|+.+... ++++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988643 788899999999999999999999999965433 367899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhcCCCchhHh--HH-HHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 036704 163 NAAIELYVQMLQSGLMPD-QFTFGSIIRACSGLCCVGLGR--QL-HAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNV 238 (634)
Q Consensus 163 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 238 (634)
++|.++|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+++.++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998854 44 344544544433332222111 11 34444444555566777778888888999999999
Q ss_pred HhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 036704 239 FSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLC 318 (634)
Q Consensus 239 ~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 318 (634)
|+++.+. + ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.
T Consensus 295 ~~~~~~~-~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 347 (597)
T 2xpi_A 295 LSSINGL-E-------------------------KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLA 347 (597)
T ss_dssp HHTSTTG-G-------------------------GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHH
T ss_pred HHHhhcC-C-------------------------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHH
Confidence 8887664 1 578889999999999999999999999987654 225556666666
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHH
Q 036704 319 ACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLH 398 (634)
Q Consensus 319 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 398 (634)
++.+.|+.++|.++++.+.+.. +.+..++..+...|.+.|++++|.++|
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRH-------------------------------PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------------------------------TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhC-------------------------------cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6666666666655555554331 344556666666677777777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 036704 399 CYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN 475 (634)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 475 (634)
+++.+.... +..+|+.++.+|.+.|++++|.++|+++. ..+..+|..++.+|.+.|++++|.++|+++.+.. +.+
T Consensus 397 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 397 SKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 666655432 45566666666666666666666666553 2345566666666666666666666666666543 234
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY---GIIPT--RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWK 548 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 548 (634)
..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..++..++.+|.+.|++++|.+.++++ ...| +..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 5666666666666666666666666665432 33454 456666666666666666666666665 2223 556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
.++.+|...|++++|.+.++++++.+|+++.++..++.+|
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 6666666666666666666666666666666666665554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-38 Score=335.59 Aligned_cols=484 Identities=7% Similarity=-0.026 Sum_probs=375.8
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHH
Q 036704 56 KQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDAR 135 (634)
Q Consensus 56 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 135 (634)
..+....+...+..+ ..++...|+.++..+.+.|+++.|..+|+++.+. .|+..++..++.+|.+.|++++|.
T Consensus 65 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 65 TDGSFLKERNAQNTD-----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCccCCCCCccccc-----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 344444444444422 2256778999999999999999999999999854 567788899999999999999999
Q ss_pred HHhccCC--CCCccchHHHHHHHHhCCChhHHHHHHHHHHHC---------------CCCCChhhHHHHHHHhhcCCCch
Q 036704 136 MVFDEMP--QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQS---------------GLMPDQFTFGSIIRACSGLCCVG 198 (634)
Q Consensus 136 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~ 198 (634)
.+|+.+. .++..+++.++.+|.+.|++++|.++|+++... |.+++..+|..++.++.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9999984 578889999999999999999999999853221 11223455555555555555555
Q ss_pred hHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH---HhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCCh
Q 036704 199 LGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNV---FSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNL 275 (634)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~ 275 (634)
+|...|+++.+.+.. +...+..+...+...+..+.+... +..+...+ +.+..
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~ 272 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED------------------------AAFLR 272 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG------------------------HHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccch------------------------HHHHH
Confidence 555555555554311 223333333322222111111000 01100000 01234
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcC
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQ 355 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 355 (634)
.+|+.++..|.+.|++++|.++|+++.+. +++..++..++..+.+.|++++|.++++.+.+.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 335 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--------------- 335 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC---------------
Confidence 56777788899999999999999998765 5889999999999999998888888877776553
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhc
Q 036704 356 AGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNF 435 (634)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (634)
+.+..++..++.++.+.|++++|..+++++.+... .+..+++.++.+|.+.|++++|.++|++
T Consensus 336 ----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 336 ----------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp ----------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44667899999999999999999999999997654 4788999999999999999999999998
Q ss_pred CC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 436 ME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 436 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
+. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+.
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 475 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDP 475 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 75 3457799999999999999999999999999875 457899999999999999999999999999864 34478
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-------AFDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.++..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|++.++++++..|+++.+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 89999999999999999999999998 44676 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 584 LCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++.+|.+.|++++|.+.++++.+..
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999998753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.7e-26 Score=228.26 Aligned_cols=377 Identities=12% Similarity=0.045 Sum_probs=293.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 036704 153 IAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRI 232 (634)
Q Consensus 153 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 232 (634)
...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344566777777777777776542 2233444555556667777777777777766643 34566777777788888888
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH-h
Q 036704 233 LDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG-L 311 (634)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 311 (634)
++|...|+++.+.++ .+..+|..+..++.+.|++++|.+.|.++.+. .|+. .
T Consensus 84 ~~A~~~~~~al~~~p-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 136 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-------------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYC 136 (388)
T ss_dssp HHHHHHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTH
T ss_pred HHHHHHHHHHHHcCc-------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHH
Confidence 888887777654332 34556777888888888888888888887664 3443 3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccH
Q 036704 312 TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASL 391 (634)
Q Consensus 312 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 391 (634)
.+..+...+...|++++|.+.+..+.+.. +.+..++..+...+...|++
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------p~~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-------------------------------PNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-------------------------------TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 45556666677777777777666665542 34567788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 392 EMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
++|...++++.+.++. +...+..+...+...|++++|...+++..+ | +..++..+..++...|++++|...++++.
T Consensus 186 ~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999987654 677888889999999999999999987652 3 46788899999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 036704 469 SSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVV 546 (634)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 546 (634)
+.+ +.+..++..+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..+
T Consensus 265 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 265 ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 874 235778999999999999999999999999864 4557788999999999999999999999998 4445 5788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 547 WKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 547 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
+..++..+...|++++|+..++++++..|+++.++..++.++.+.|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999998887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-28 Score=250.00 Aligned_cols=214 Identities=12% Similarity=0.093 Sum_probs=182.9
Q ss_pred HHHHHHHhhhcCCCCCCcc-cHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccC
Q 036704 63 ALVAFDFLQNNTNFRIRPS-TYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEM 141 (634)
Q Consensus 63 A~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 141 (634)
+..+.+.+.+. +....+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 9 SENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred HHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 34444555554 5555544 58889999999999999999999999999999999999999999887654332
Q ss_pred CCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHH
Q 036704 142 PQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNA 221 (634)
Q Consensus 142 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 221 (634)
.+.++++.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 036704 222 LIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEM 301 (634)
Q Consensus 222 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 301 (634)
+|.+|++.|++++|.++|++|.+.+.. ||..+|++||.+|++.|++++|.++|++|
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~------------------------Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVV------------------------PEEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCC------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC------------------------CCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 999999999999999999999888764 99999999999999999999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHhcCC
Q 036704 302 GDRELIPDGLTVRSLLCACTSP 323 (634)
Q Consensus 302 ~~~g~~p~~~~~~~ll~~~~~~ 323 (634)
++.|..|+..||+.++..++..
T Consensus 202 r~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 202 RDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999888764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.2e-27 Score=239.31 Aligned_cols=202 Identities=11% Similarity=0.176 Sum_probs=128.9
Q ss_pred hHHHHHHHHHhhCCCCCCH-hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCC
Q 036704 292 NEAMSLFSEMGDRELIPDG-LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQ 370 (634)
Q Consensus 292 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~ 370 (634)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------------------------------ 56 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------------------------------ 56 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------------------------------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------------------------
Confidence 3456667778878776654 458889999999998777766666665555
Q ss_pred CCCCHhHHHHHHHHhhccc---------cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC----
Q 036704 371 TKPDHITFNDVMGACAAMA---------SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---- 437 (634)
Q Consensus 371 ~~~~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 437 (634)
+.||..||+++|.+|++.+ .++.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 57 v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 57 VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 5666666666666665433 356666677777766777777777777777777777777777776664
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHH
Q 036704 438 DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSC 517 (634)
Q Consensus 438 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 517 (634)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|++++|.+++++|.+. +..|+..||+.
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~ 215 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDM 215 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHH
Confidence 36666777777777777777777777777777777777777777777777777777777777777665 77777777777
Q ss_pred HHHHHHh
Q 036704 518 VVDLLAR 524 (634)
Q Consensus 518 l~~~~~~ 524 (634)
++..|..
T Consensus 216 l~~~F~s 222 (501)
T 4g26_A 216 IEEWFKS 222 (501)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 6666654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.9e-25 Score=220.84 Aligned_cols=357 Identities=13% Similarity=0.035 Sum_probs=304.7
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHH
Q 036704 188 IRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVF 267 (634)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~ 267 (634)
...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++...+.++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-------------------- 64 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-------------------- 64 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------
Confidence 345567899999999999888764 33456677788889999999999999887655443
Q ss_pred hcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChh
Q 036704 268 NEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVP 346 (634)
Q Consensus 268 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 346 (634)
.+..+|..+...+.+.|++++|.+.|+++.+. .|+ ..++..+..++...|++++|.+.+..+.+..
T Consensus 65 -----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 131 (388)
T 1w3b_A 65 -----LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------ 131 (388)
T ss_dssp -----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC------
T ss_pred -----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 57788999999999999999999999998764 454 4568888888999998888888877776642
Q ss_pred HHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCh
Q 036704 347 VCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSL 426 (634)
Q Consensus 347 ~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (634)
+.+...+..+...+...|++++|...++++.+..+. +..++..+...+.+.|++
T Consensus 132 -------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 132 -------------------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp -------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCH
T ss_pred -------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 233456777788889999999999999999987654 678899999999999999
Q ss_pred HHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 427 GSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 427 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
++|...|+++.+ .+...|..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++++.
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998863 345678889999999999999999999998863 2257889999999999999999999999998
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 504 NEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 504 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
+. .+.+..++..+..++.+.|++++|.+.++++ ..+++..++..++..+...|++++|+..++++++..|+++.++
T Consensus 265 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 265 EL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp HT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 63 2335778899999999999999999999998 3345788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..++.+|.+.|++++|.+.++++.+.
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999874
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.1e-23 Score=212.84 Aligned_cols=430 Identities=10% Similarity=-0.039 Sum_probs=282.6
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 036704 149 WTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTK 228 (634)
Q Consensus 149 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 228 (634)
|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|...++.+.+.+ +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4445556666777777777777776643 566667777777777777777777777776654 2344566667777777
Q ss_pred cCChhHHHHHHhccCCCCcch---HHHHHHHhhccchHHHHHhcC---C----CCChhhHHHHHHHHHcCCChhHHHHHH
Q 036704 229 FDRILDAWNVFSSIARKDITS---WGSMIDGFSKLDFARTVFNEM---E----SPNLASWNTIIAGVASCSNANEAMSLF 298 (634)
Q Consensus 229 ~g~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~a~~~~~~~---~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 298 (634)
.|++++|...|+++...++.. ....+..+.+........+.+ . .|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 777777777776654433211 111111111100000000000 0 011111100000001111111111111
Q ss_pred HHHhhCCCC--------CC-HhHHHHHHHHhc---CCCChHHHHHHHHHHHH-----hCCCCChhHHhHHHhcCHhHHHH
Q 036704 299 SEMGDRELI--------PD-GLTVRSLLCACT---SPLSLYQGMQIHSYIIK-----KGFYSNVPVCNAILQHQAGELFR 361 (634)
Q Consensus 299 ~~m~~~g~~--------p~-~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~a~~ 361 (634)
..+...... |+ ...+......+. +.|+++.|...++.+.+ ....|+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------- 232 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL------------- 232 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH-------------
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc-------------
Confidence 111111100 11 222222222222 36666666666655554 2111110000
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---
Q 036704 362 LFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--- 438 (634)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 438 (634)
.+.+..++..+...+...|++++|...++++.+.... ...+..+...+...|++++|...++.+.+
T Consensus 233 ---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 301 (514)
T 2gw1_A 233 ---------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS 301 (514)
T ss_dssp ---------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT
T ss_pred ---------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc
Confidence 0223456778888999999999999999999988765 78888899999999999999999998753
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCV 518 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 518 (634)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 378 (514)
T 2gw1_A 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFF 378 (514)
T ss_dssp TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHH
Confidence 456688889999999999999999999999874 335778889999999999999999999999864 33456788889
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 519 VDLLARAGRVHEAEDFINQM----AFDDD----IVVWKSLLASCKT---HGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
...+.+.|++++|.+.++++ +..++ ...+..++..+.. .|++++|...++++++..|+++.++..++.+
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 99999999999999999987 22222 4488899999999 9999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036704 588 YASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~g 608 (634)
|.+.|++++|.+.++++.+.+
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999999998754
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.2e-23 Score=214.56 Aligned_cols=283 Identities=10% Similarity=-0.063 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHh---cCChhHHHHHHhccCC-----C--CcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHH
Q 036704 216 LISQNALIAMYTK---FDRILDAWNVFSSIAR-----K--DITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGV 285 (634)
Q Consensus 216 ~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~--~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 285 (634)
...+..+...+.. .|++++|...|+++.+ . ++..-. ....+..+|..+...+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK------------------LKEKLAISLEHTGIFK 247 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc------------------cChHHHHHHHHHHHHH
Confidence 3344444444444 7888888888877544 1 110000 0002456788888899
Q ss_pred HcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHH
Q 036704 286 ASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSL 365 (634)
Q Consensus 286 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~ 365 (634)
...|++++|...++++.+.. |+...+..+...+...|+++.|...++.+.+
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------- 298 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALK--------------------------- 298 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT---------------------------
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh---------------------------
Confidence 99999999999999887653 3355555555556666655555555544433
Q ss_pred HHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChh
Q 036704 366 MLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVV 442 (634)
Q Consensus 366 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 442 (634)
.... +...+..+...+...|++++|...++.+. ..+..
T Consensus 299 --------------------------------------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 339 (514)
T 2gw1_A 299 --------------------------------------LDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339 (514)
T ss_dssp --------------------------------------TCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH
T ss_pred --------------------------------------cCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH
Confidence 2211 33445555555555666666666555543 23345
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCV 518 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 518 (634)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.....-.++ ...+..+
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 66667777777777888888887777653 235677778888888888888888888888764332333 3377888
Q ss_pred HHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 519 VDLLAR---AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 519 ~~~~~~---~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
...+.. .|++++|.+.++++ ...| +..++..++..+...|++++|...++++++..|.++..+..+.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 888888 89999999999887 3333 6778889999999999999999999999999999888777663
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.7e-21 Score=203.61 Aligned_cols=436 Identities=11% Similarity=-0.009 Sum_probs=243.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHcc
Q 036704 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKC 128 (634)
Q Consensus 49 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (634)
.....+.+.|++++|+..|+.+.+. .+.++..+..+..++...|+++.|.+.++++.+.+ +.+..++..+..++...
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 4455678888888888888888875 34566778888888888888888888888888775 55667777788888888
Q ss_pred CChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHH
Q 036704 129 GSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVI 208 (634)
Q Consensus 129 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (634)
|++++|...|+.+. .++...+..+..+...+....|...++++.... |+..
T Consensus 107 g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~-------------------------- 157 (537)
T 3fp2_A 107 GNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG-------------------------- 157 (537)
T ss_dssp TCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC----------------------------------
T ss_pred CCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc--------------------------
Confidence 88888888776332 222222223334444455566777776665421 1000
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHc-
Q 036704 209 KSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVAS- 287 (634)
Q Consensus 209 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~- 287 (634)
....|+ ...+..+....+.+.+...+......+.. .......+...+..
T Consensus 158 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 158 -SQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTA-------------------------YALLSDALQRLYSAT 207 (537)
T ss_dssp --CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSS-------------------------HHHHHHHHHHHHTCS
T ss_pred -ccccch----HhHHHHHHHhcChHHHHHHHhhccccccH-------------------------HHHHHHHHHHHHHhh
Confidence 001111 11223344445555555554444333221 01122222222222
Q ss_pred -------CCChhHHHHHHHHHhhCCCCCC-HhH-------HHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHH
Q 036704 288 -------CSNANEAMSLFSEMGDRELIPD-GLT-------VRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAIL 352 (634)
Q Consensus 288 -------~g~~~~A~~~~~~m~~~g~~p~-~~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (634)
.|++++|..+++++.+. .|+ ... +..+...+...|
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~---------------------------- 257 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKN---------------------------- 257 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT----------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcc----------------------------
Confidence 24678888888887654 233 221 222222222222
Q ss_pred hcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 036704 353 QHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAREL 432 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (634)
++++|...+++.... .|+...+..+...+...|+++.|...++++.+.... +..++..+...+...|++++|...
T Consensus 258 --~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 258 --NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp --CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 444444555555443 344566666666777777777777777776665543 455666666666677777777776
Q ss_pred HhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCC
Q 036704 433 FNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGII 509 (634)
Q Consensus 433 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 509 (634)
++.+.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 666542 334566666666667777777777776666653 2235566666666666677777777766665432111
Q ss_pred CC----hhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 510 PT----RERRSCVVDLLARA----------GRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 510 ~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
++ ...+..+..++.+. |++++|.+.++++ ... .+...+..++..|...|++++|.+.++++++.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11 11233334555555 6666776666665 222 24556666666666667777777777777666
Q ss_pred CCCCchhHH
Q 036704 574 DPTNSAALV 582 (634)
Q Consensus 574 ~p~~~~~~~ 582 (634)
.|.+.....
T Consensus 492 ~~~~~~~~~ 500 (537)
T 3fp2_A 492 ARTMDEKLQ 500 (537)
T ss_dssp C--CHHHHH
T ss_pred CCCcHHHHH
Confidence 666555433
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.8e-21 Score=198.46 Aligned_cols=338 Identities=10% Similarity=0.035 Sum_probs=246.4
Q ss_pred CChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhh
Q 036704 179 PDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFS 258 (634)
Q Consensus 179 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 258 (634)
.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----------- 91 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM----------- 91 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------
Confidence 344555666666666666666666666666542 23455666666666666666666666665544332
Q ss_pred ccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCH----hHHHHHHHHhcCCCChHHHHHHHH
Q 036704 259 KLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDG----LTVRSLLCACTSPLSLYQGMQIHS 334 (634)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~ 334 (634)
.+...|..+...|.+.|++++|.+.|+++.+. .|+. ..+..+...+.
T Consensus 92 --------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------- 142 (450)
T 2y4t_A 92 --------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE------------- 142 (450)
T ss_dssp --------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------
T ss_pred --------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-------------
Confidence 34555666666666666666666666666543 2222 22222211100
Q ss_pred HHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHH
Q 036704 335 YIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMN 414 (634)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 414 (634)
...+..+...+...|++++|...++++.+.... +...+.
T Consensus 143 ----------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 181 (450)
T 2y4t_A 143 ----------------------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRE 181 (450)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHH
Confidence 012333455677889999999999999887654 778889
Q ss_pred HHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH--------
Q 036704 415 GLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGV-------- 482 (634)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l-------- 482 (634)
.+..+|.+.|++++|...|+.+.+ .+..+|..+...|...|++++|...++++.+. .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998763 56778999999999999999999999999876 444 4444444
Q ss_pred ----HHHhcccCCHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036704 483 ----LTACSHVGLVEEGLQLYRIMQNEYGIIPT-----RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLL 551 (634)
Q Consensus 483 ----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 551 (634)
...+...|++++|...|+++... .|+ ...+..+..++.+.|++++|++.++++ ...| +...|..++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 78899999999999999999864 444 447888999999999999999999997 4344 688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH------------HHhcC-----ChHHHHHHHHH
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI------------YASSG-----KWEEVARLMGS 603 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 603 (634)
.+|...|++++|...++++++..|+++.++..++.+ |...| +.+++.+.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999844 44455 56677777776
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.3e-20 Score=192.14 Aligned_cols=367 Identities=9% Similarity=-0.033 Sum_probs=280.1
Q ss_pred CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHH
Q 036704 145 NVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIA 224 (634)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 224 (634)
+...|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45578889999999999999999999998753 4567889999999999999999999999999876 335778899999
Q ss_pred HHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCCh---hhHHHHHHHHHcCCChhHHHHHHHHH
Q 036704 225 MYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNL---ASWNTIIAGVASCSNANEAMSLFSEM 301 (634)
Q Consensus 225 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m 301 (634)
+|.+.|++++|...|+++.+.++ .+. ..+..++..+...+.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~~-------- 149 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP-------------------------SENEEKEAQSQLIKSDEMQRLRSQ-------- 149 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-------------------------CChhhHHHHHHHHHHHHHHHHHHH--------
Confidence 99999999999999999877654 344 667766655322222211
Q ss_pred hhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 036704 302 GDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDV 381 (634)
Q Consensus 302 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 381 (634)
...+...|+++.|...++.+.+.. +.+...+..+
T Consensus 150 ---------------a~~~~~~~~~~~A~~~~~~~~~~~-------------------------------~~~~~~~~~l 183 (450)
T 2y4t_A 150 ---------------ALNAFGSGDYTAAIAFLDKILEVC-------------------------------VWDAELRELR 183 (450)
T ss_dssp ---------------HHHHHHHTCHHHHHHHHHHHHHHC-------------------------------TTCHHHHHHH
T ss_pred ---------------HHHHHHcCCHHHHHHHHHHHHHhC-------------------------------CCChHHHHHH
Confidence 222333444444444444443321 4567788889
Q ss_pred HHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC-hhhHHHH-----------
Q 036704 382 MGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PD-VVSWSSL----------- 447 (634)
Q Consensus 382 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l----------- 447 (634)
..++...|++++|...++++.+.... +..++..+..+|...|++++|...|+.+.+ |+ ...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877543 678899999999999999999999998763 43 3344444
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 448 -IVGYAQFGCGEEALKLFRRMRSSGVRPN-----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 448 -~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++... .+.+...+..+..+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 78899999999999999999886 454 347888899999999999999999999864 23467889999999
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHhcCCCCch--
Q 036704 522 LARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS------------CKTHG-----NVDVGKRAAEN-ILKIDPTNSA-- 579 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~-- 579 (634)
|...|++++|.+.++++ ...| +...+..+..+ |...| +.+++.+.+++ +++..|++..
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~ 418 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE 418 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH
T ss_pred HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999999999998 6666 46666666633 33344 66788888886 6777776432
Q ss_pred --------hHHHHHHHHHhcCChHHH
Q 036704 580 --------ALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 580 --------~~~~l~~~~~~~g~~~~A 597 (634)
.+..+..+|...|+.+++
T Consensus 419 ~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 419 EEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 445566666666655543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=4.4e-20 Score=192.90 Aligned_cols=442 Identities=9% Similarity=-0.055 Sum_probs=311.9
Q ss_pred cccccchhhHHhhcCChHHHHHHhhcccCCCCc---cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 036704 12 PRWCCEYWDAFELCMLLDQAGEVVDSFLRRFDD---IWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLIS 88 (634)
Q Consensus 12 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 88 (634)
+..+..++..+.+.|++++|.+.|++....+|. .+. .+...+.+.|++++|++.|+++.+. .+.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS-NISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 345567799999999999999999997754433 343 5677799999999999999999986 4556778999999
Q ss_pred HhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC------CCccchHHHHHHHHhCCCh
Q 036704 89 ACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ------RNVVSWTAMIAGCSQNGQE 162 (634)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~ 162 (634)
++...|++++|...|+ ..... |+. ....+..+...+....|...++.+.. +........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999996 33322 221 12234455556667788888887653 2223345556666666666
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 036704 163 NAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSI 242 (634)
Q Consensus 163 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 242 (634)
+.+...+..... ..+....+...+...... + .-......|++++|..+++++
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~--------------------~------~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSA--------------------T------DEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTC--------------------S------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--cccHHHHHHHHHHHHHHh--------------------h------hhhhHHHHHHHHHHHHHHHHH
Confidence 665544433221 112211111111111000 0 001111235667777777766
Q ss_pred CCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcC
Q 036704 243 ARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTS 322 (634)
Q Consensus 243 ~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 322 (634)
.+.++....... .-..+|..+...+...|++++|...+..+... .|+...+..+...+..
T Consensus 229 l~~~p~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 229 LSANTVDDPLRE------------------NAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLAD 288 (537)
T ss_dssp HC--CCCHHHHH------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCC
T ss_pred HHHCCCcchhhH------------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHH
Confidence 554431100000 00234667778889999999999999999875 5667888889999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHH
Q 036704 323 PLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIM 402 (634)
Q Consensus 323 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 402 (634)
.|+++.|...+..+.+.. +.+..++..+...+...|++++|...++++.
T Consensus 289 ~~~~~~A~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLN-------------------------------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp SSCCHHHHHHHHHHHHHC-------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccC-------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999988888877653 4467789999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----C
Q 036704 403 KTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-----P 474 (634)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p 474 (634)
+.... +...+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.... .
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 88754 667888999999999999999999998763 45668899999999999999999999998765311 1
Q ss_pred CHHHHHHHHHHhccc----------CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036704 475 NHVTLVGVLTACSHV----------GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD 543 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 543 (634)
....+......+... |++++|...++++.+. .+.+...+..+..+|.+.|++++|.+.|++. ...|+
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 223345556677777 9999999999999864 2346778899999999999999999999998 44443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.5e-18 Score=171.02 Aligned_cols=325 Identities=10% Similarity=0.007 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHH
Q 036704 217 ISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMS 296 (634)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 296 (634)
..+..+...+...|++++|...|+++.+.++ .+..+|..+...+...|++++|..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-------------------------~~~~~~~~~a~~~~~~~~~~~A~~ 58 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-------------------------DNYIAYYRRATVFLAMGKSKAALP 58 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-------------------------ccHHHHHHHHHHHHHccCHHHHHH
Confidence 3444555556666666666666655544332 345556666666666666666666
Q ss_pred HHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCC-ChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCH
Q 036704 297 LFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYS-NVPVCNAILQHQAGELFRLFSLMLASQTKPDH 375 (634)
Q Consensus 297 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~ 375 (634)
.++++.+.. +.+...+..+...+...|++++|...++.+.+..... +.. .+...+..+. ..
T Consensus 59 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~------~~ 120 (359)
T 3ieg_A 59 DLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK-----------EAESQLVKAD------EM 120 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH-----------HHHHHHHHHH------HH
T ss_pred HHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH-----------HHHHHHHHHH------HH
Confidence 666665431 1234555555566666666666666555554432100 000 0000000000 00
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHH
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYA 452 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 452 (634)
..+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+ .+...+..+...+.
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 11223356677778888888888887776543 566777777777777787777777776543 34556777777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-h----hHH
Q 036704 453 QFGCGEEALKLFRRMRSSGVRPNHVTLV------------GVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-R----ERR 515 (634)
Q Consensus 453 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~----~~~ 515 (634)
..|++++|...+++..+.. +.+...+. .+...+...|++++|...++++... .|+ . ..+
T Consensus 200 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 275 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSK 275 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHH
Confidence 7777777777777777653 11222222 2244466667777777777766653 222 1 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
..+..++...|++++|.+.+++. ...| +..++..++..+...|++++|...++++++..|+++.++..+..+..
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34556666666666666666666 2223 55666666666666667777777777666666666666666655443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=7.4e-18 Score=165.91 Aligned_cols=299 Identities=11% Similarity=0.006 Sum_probs=245.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ 353 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (634)
|+..+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++.|...++.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------- 67 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK------------- 67 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 45567888899999999999999999987752 3356778888888888888888888877776642
Q ss_pred cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC--CchhHHHHH------------HHH
Q 036704 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLA--LDVFVMNGL------------MDM 419 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~ 419 (634)
+.+...+..+...+...|++++|...++++.+.... .+...+..+ ...
T Consensus 68 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 68 ------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 335577888888999999999999999999876541 134444444 578
Q ss_pred HhhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 036704 420 YVKCGSLGSARELFNFME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGL 496 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 496 (634)
+...|++++|...++.+. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999876 3566788899999999999999999999999874 446888999999999999999999
Q ss_pred HHHHHHHHHhCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhc
Q 036704 497 QLYRIMQNEYGIIPT-RERRS------------CVVDLLARAGRVHEAEDFINQM-AFDDD-I----VVWKSLLASCKTH 557 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~ 557 (634)
..++++.+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...
T Consensus 209 ~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 209 SEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 999999864 333 33322 2367789999999999999998 33343 3 2355678889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 558 GNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 558 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
|++++|...++++++..|+++.++..++.++.+.|++++|.+.++++.+..
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998753
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=5e-18 Score=165.05 Aligned_cols=220 Identities=9% Similarity=-0.018 Sum_probs=166.3
Q ss_pred CHhHHHHHHHHhhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 036704 374 DHITFNDVMGACAAMA-SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIV 449 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 449 (634)
+...+..+...+...| ++++|...++++.+.... +...+..+...+...|++++|...++++.+ .+...+..+..
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3445566666666777 777777777777665433 456677777777888888888888777652 33456777888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC-------CCChhHHHHHHHHH
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI-------IPTRERRSCVVDLL 522 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 522 (634)
.|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.....- +....++..+..+|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 8888888888888888888764 335777888888888889999999988888764211 33456788888899
Q ss_pred HhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCChH
Q 036704 523 ARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY-ASSGKWE 595 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 595 (634)
...|++++|.+.+++. ... .+...+..+...+...|++++|...++++++..|+++.++..++.++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999887 323 36778888899999999999999999999999999999999998888 4555543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=8.6e-15 Score=157.22 Aligned_cols=292 Identities=12% Similarity=0.088 Sum_probs=180.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCC--CCHhHHHHHHHH---------------------------hcCCCChH
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELI--PDGLTVRSLLCA---------------------------CTSPLSLY 327 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~---------------------------~~~~g~~~ 327 (634)
--...+++|...|.+.+|++++++....+-. -+...-+.++.+ +...|.++
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFE 1066 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHH
Confidence 3355667788889999999999888743210 111222223322 33344455
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhc--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhC
Q 036704 328 QGMQIHSYIIKKGFYSNVPVCNAILQH--QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTG 405 (634)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 405 (634)
+|..++++.. -.....+.+++. ++++|.++.++. -+..+|..+..++...|++++|...|.+.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 5555554431 111112233322 555555555543 23556667777777777777777776543
Q ss_pred CCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036704 406 LALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVL 483 (634)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 483 (634)
-+...|..++.++.+.|++++|.+.+....+ +++...+.++.+|++.+++++...+ .. .|+...|..+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHH
Confidence 2556666677777777777777777765432 3333333466666766666643322 11 34556667778
Q ss_pred HHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----------------------
Q 036704 484 TACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAF----------------------- 540 (634)
Q Consensus 484 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 540 (634)
..|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++...
T Consensus 1203 d~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8888888888888888875 2578888888888999999888887721
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CChHHHHHHHH
Q 036704 541 ----DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS--GKWEEVARLMG 602 (634)
Q Consensus 541 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 602 (634)
..++..+..++..|.+.|.+++|+++++.++.++|.+...|..++.+|++. ++..++.++|.
T Consensus 1273 gl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1273 GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 113334556666777778888888888888887777777777777777654 35555655555
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.4e-17 Score=161.78 Aligned_cols=231 Identities=10% Similarity=0.019 Sum_probs=200.1
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-ChHHHHHHHhcCCC---CChhhHHHHH
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG-SLGSARELFNFMED---PDVVSWSSLI 448 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~ 448 (634)
.+...+..++.++...|++++|..+++++.+.... +...+..+...+...| ++++|...|+...+ .+...|..+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 132 (330)
T 3hym_B 54 FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYG 132 (330)
T ss_dssp TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHH
T ss_pred CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 34455666777888999999999999999987654 6778888999999999 99999999998763 4466899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+...|++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccH
Confidence 99999999999999999999874 334677777899999999999999999999853 344678888999999999999
Q ss_pred HHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 036704 529 HEAEDFINQM-AF----------DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 529 ~~A~~~~~~~-~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 597 (634)
++|.+.++++ .. +....++..++..+...|++++|+..++++++..|.++.++..++.++.+.|++++|
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 9999999987 11 334678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 036704 598 ARLMGSMKER 607 (634)
Q Consensus 598 ~~~~~~~~~~ 607 (634)
.+.++++.+.
T Consensus 290 ~~~~~~al~~ 299 (330)
T 3hym_B 290 VDYFHTALGL 299 (330)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHcc
Confidence 9999988764
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.6e-14 Score=155.28 Aligned_cols=442 Identities=10% Similarity=0.067 Sum_probs=241.9
Q ss_pred HHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHH
Q 036704 86 LISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAA 165 (634)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 165 (634)
+...+...|.+++|..+|++.. -.....+.++ -..+++++|.++.++.. +..+|..+..++...|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 4445555555555555555531 0111111111 14455555555555442 234455566666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCC
Q 036704 166 IELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARK 245 (634)
Q Consensus 166 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 245 (634)
++.|.+. -|...|..++.++.+.|++++|.+++....+....| ...+.++.+|++.+++++...+.
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI------ 1190 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI------ 1190 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHH------
Confidence 6665332 344455556666666666666666665555443222 22223555566665555433332
Q ss_pred CcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCC
Q 036704 246 DITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLS 325 (634)
Q Consensus 246 ~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 325 (634)
..++...|..+...|...|++++|..+|... ..|..+..++.+.|+
T Consensus 1191 -------------------------~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1191 -------------------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred -------------------------hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence 1255566666777777777777777777763 367777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHh----HHHh-cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHH
Q 036704 326 LYQGMQIHSYIIKKGFYSNVPVCN----AILQ-HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCY 400 (634)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~----~ll~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 400 (634)
++.|.+.+++... ..+|. +.+. +.+..|...... +..+...+..++..|.+.|.+++|..+++.
T Consensus 1237 ~q~AIEaarKA~n------~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKANS------TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHhCC------HHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777766521 12221 1221 133333332221 344556677888888888888888888877
Q ss_pred HHHhCCCCchhHHHHHHHHHhh--cCChHHHHHHHhcCCC--------CChhhHHHHHHHHHhcCChHHHHHHH------
Q 036704 401 IMKTGLALDVFVMNGLMDMYVK--CGSLGSARELFNFMED--------PDVVSWSSLIVGYAQFGCGEEALKLF------ 464 (634)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~------ 464 (634)
..... +-....|+-+..+|++ -++..++.+.|..-.. .+...|.-++-.|.+.|+++.|....
T Consensus 1306 aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1306 ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred HhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 76544 3345566555555554 3456666666664332 34456888888888888888887322
Q ss_pred -------HHHHhCCCCCCHHHHHHHHHHhcccC---------------CHHHHHHHHHHHH-----HHh----CCCCChh
Q 036704 465 -------RRMRSSGVRPNHVTLVGVLTACSHVG---------------LVEEGLQLYRIMQ-----NEY----GIIPTRE 513 (634)
Q Consensus 465 -------~~m~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~-----~~~----~~~~~~~ 513 (634)
.....+ ..|+..|...+.-|.... +++++.+++.+.- +.+ ...-+..
T Consensus 1385 a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~ 1462 (1630)
T 1xi4_A 1385 AWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKS 1462 (1630)
T ss_pred hhhhHHHHHHhcc--cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchh
Confidence 111111 335555655555555444 5666666555211 000 0112333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-C---------CCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-A---------FDD-DIVVWKSLLAS-CKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~~-~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
+-.++.+.|...++++.-.+.++.. . ... +..-+..+... |.+.|+++.|.+++++. ..|
T Consensus 1463 Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d--------~l~ 1534 (1630)
T 1xi4_A 1463 VNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKD--------SLY 1534 (1630)
T ss_pred hhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhc--------cCH
Confidence 3445666666666655444433333 1 011 22223344333 45558888888887762 245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.-.+....+.|+.+.+.+++.-..+.
T Consensus 1535 ~dAm~~a~~S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1535 KDAMQYASESKDTELAEELLQWFLQE 1560 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55667777778888887777766654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=2.3e-17 Score=163.07 Aligned_cols=308 Identities=8% Similarity=-0.083 Sum_probs=209.2
Q ss_pred HHhcCChhHHHH-HHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhC
Q 036704 226 YTKFDRILDAWN-VFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDR 304 (634)
Q Consensus 226 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 304 (634)
+...|++++|.. .|++.....+.. +..+...+..+...+.+.|++++|...|+++.+.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 93 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEEN---------------------PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ 93 (368)
T ss_dssp -----------CHHHHCCCCCCSSC---------------------TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCC---------------------cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344577888887 777655432210 0124667888899999999999999999998875
Q ss_pred CCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036704 305 ELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGA 384 (634)
Q Consensus 305 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 384 (634)
. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...
T Consensus 94 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~l~~~ 141 (368)
T 1fch_A 94 D-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------------------------------PDNQTALMALAVS 141 (368)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------TTCHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------------------------------CCCHHHHHHHHHH
Confidence 3 2344556666666666666666666555554432 3345566666666
Q ss_pred hhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLF 464 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 464 (634)
+...|++++|...++++.+..... ...+..+.. ... ...+ ...+.. +..+...|++++|...+
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~-------~~~-------~~~~-~~~~~~-~~~~~~~~~~~~A~~~~ 204 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAY-AHLVTPAEE-------GAG-------GAGL-GPSKRI-LGSLLSDSLFLEVKELF 204 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTT-GGGCC------------------------------CT-THHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH-------Hhh-------hhcc-cHHHHH-HHHHhhcccHHHHHHHH
Confidence 666666666666666666544321 111110000 000 0000 001112 23333889999999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036704 465 RRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD 542 (634)
Q Consensus 465 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 542 (634)
+++.+..... +..++..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|.+.++++ ...|
T Consensus 205 ~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 205 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9998874221 4788899999999999999999999999864 2345778899999999999999999999998 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 543 -DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN-----------SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 543 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
+...+..++.+|...|++++|...++++++..|++ ..+|..++.+|...|++++|..++++..
T Consensus 283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 67899999999999999999999999999988887 7899999999999999999999877443
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.7e-15 Score=155.68 Aligned_cols=205 Identities=9% Similarity=-0.015 Sum_probs=158.8
Q ss_pred hHHHHHHHHhhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHH
Q 036704 376 ITFNDVMGACAA----MASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSS 446 (634)
Q Consensus 376 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 446 (634)
..+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .++.++|...|+...+ .+...+..
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~ 296 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYY 296 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344445555543 678888888888887765 44566666667766 7889999999987764 45667777
Q ss_pred HHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036704 447 LIVGYAQF-----GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG---LVEEGLQLYRIMQNEYGIIPTRERRSCV 518 (634)
Q Consensus 447 l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l 518 (634)
|...|... +++++|..+|++..+.| +...+..+...|...| ++++|.+.|++..+. .+...+..+
T Consensus 297 Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~L 369 (490)
T 2xm6_A 297 LAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNL 369 (490)
T ss_dssp HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHH
Confidence 88888877 89999999999998875 4556666776676655 789999999998864 356778888
Q ss_pred HHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CchhHHHHHHH
Q 036704 519 VDLLAR----AGRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPT---NSAALVLLCNI 587 (634)
Q Consensus 519 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~ 587 (634)
...|.. .+++++|.++|++.....++..+..+...|.. .++.++|...|+++.+..|+ ++.+...++.+
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 888888 89999999999998334568888899999988 89999999999999998854 77777777766
Q ss_pred HHh
Q 036704 588 YAS 590 (634)
Q Consensus 588 ~~~ 590 (634)
+.+
T Consensus 450 ~~~ 452 (490)
T 2xm6_A 450 TAK 452 (490)
T ss_dssp CHH
T ss_pred CHh
Confidence 554
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=4.5e-15 Score=154.12 Aligned_cols=210 Identities=5% Similarity=-0.066 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhh-------cCChH-------HHHHHHhcCCC---C-ChhhHHHHHHHHHh
Q 036704 392 EMGTQLHCYIMKTGLALDVFVMNGLMDMYVK-------CGSLG-------SARELFNFMED---P-DVVSWSSLIVGYAQ 453 (634)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 453 (634)
..+..+|++++...+. +...|..++..+.+ .|+++ +|..++++..+ | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4677888888876433 67788888887775 68987 89999998763 4 46688889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH-HHhcCChH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPN-H-VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDL-LARAGRVH 529 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~g~~~ 529 (634)
.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|.++|++..+. .|+ ...+...+.. +...|+++
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 99999999999999986 454 3 47888888888999999999999999853 332 3333322222 34689999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHhcCChHHHHHHHHH
Q 036704 530 EAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA----ALVLLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 530 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 603 (634)
+|..+|++. ...| ++..|..++..+...|+.++|..+|++++...|.++. +|...+....+.|+.+.+..+.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 3334 6789999999999999999999999999998776655 788888888889999999999998
Q ss_pred HHhC
Q 036704 604 MKER 607 (634)
Q Consensus 604 ~~~~ 607 (634)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2e-16 Score=152.41 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=30.8
Q ss_pred hhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHH
Q 036704 23 ELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKV 102 (634)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (634)
.+.|++++|.+.++++..| ..|. .+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs-~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWS-QLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHH-HHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3568899999999999655 6898 8899999999999999999643 4677999999999999999999998
Q ss_pred HHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 036704 103 HDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQF 182 (634)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 182 (634)
++..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ .
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 8877764 45578888999999999999998887753 66678888888888888888888888755 2
Q ss_pred hHHHHHHHhhcCCCchhHhHHHHHH
Q 036704 183 TFGSIIRACSGLCCVGLGRQLHAHV 207 (634)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (634)
.|..+..++.+.|++++|.+.+..+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc
Confidence 3444555444444444444444433
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=9.3e-15 Score=150.12 Aligned_cols=352 Identities=12% Similarity=0.009 Sum_probs=257.4
Q ss_pred ChhhHHHHHHHhhc----CCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChhHHHHHHhccCCCCcchHH
Q 036704 180 DQFTFGSIIRACSG----LCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTK----FDRILDAWNVFSSIARKDITSWG 251 (634)
Q Consensus 180 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 251 (634)
+...+..+-..+.. .+++++|...++...+.| +...+..|...|.. .+++++|...|++..+.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------ 108 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------ 108 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------
Confidence 34444444444444 566666666666666543 34455566666666 66777777776654332
Q ss_pred HHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHc----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcC----C
Q 036704 252 SMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVAS----CSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTS----P 323 (634)
Q Consensus 252 ~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 323 (634)
.++..+..|...|.. .+++++|.+.|++..+.| +...+..+...+.. .
T Consensus 109 ---------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 109 ---------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp ---------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred ---------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 244555666666666 677777777777776654 23333333333332 3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc----cccHHHHHHHHH
Q 036704 324 LSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAA----MASLEMGTQLHC 399 (634)
Q Consensus 324 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 399 (634)
++ .++|.+.|++..+.| +...+..+...+.. .++.++|...++
T Consensus 165 ~d------------------------------~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 165 RD------------------------------YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp CC------------------------------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CC------------------------------HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 33 444444554444432 45566666666666 789999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q 036704 400 YIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSSLIVGYAQ----FGCGEEALKLFRRMRSS 470 (634)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~ 470 (634)
+..+.+ +...+..+...|.. .+++++|...|+...+ .+...+..+...|.. .++.++|..+|++..+.
T Consensus 212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 999876 56677778888876 7899999999998764 566677888888888 89999999999999887
Q ss_pred CCCCCHHHHHHHHHHhccc-----CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCC
Q 036704 471 GVRPNHVTLVGVLTACSHV-----GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG---RVHEAEDFINQMAFDD 542 (634)
Q Consensus 471 ~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 542 (634)
| +...+..+...+... +++++|...+++..+. + +...+..+...|...| ++++|+++|++.....
T Consensus 289 ~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 289 G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 5 556677777777776 8999999999999864 3 4566777888887766 8899999999983346
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 036704 543 DIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS----SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 543 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 609 (634)
++..+..+...|.. .+++++|...++++.+.. ++.++..++.+|.+ .+++++|...+++..+.+.
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 78899999999988 899999999999998864 68899999999998 8999999999999998774
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=8e-17 Score=155.14 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=30.9
Q ss_pred ccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHH
Q 036704 127 KCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAH 206 (634)
Q Consensus 127 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (634)
+.|++++|.+.++++..| .+|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 667888888888888555 4888899999999999999988864 25777888888888888899988887776
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHH
Q 036704 207 VIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVA 286 (634)
Q Consensus 207 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 286 (634)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------------------------pn~~a~~~IGd~~~ 133 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING-------------------------------PNNAHIQQVGDRCY 133 (449)
T ss_dssp ------------------------CHHHHTTTTTC-------------------------------C-------------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------------------------------CcHHHHHHHHHHHH
Confidence 6663 44467788888899999999888877753 67778888999999
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHH
Q 036704 287 SCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIH 333 (634)
Q Consensus 287 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 333 (634)
..|.+++|..+|..+ ..|..+..++.+.|++++|.+.+
T Consensus 134 ~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 134 DEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ---CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999866 24555555555555544444433
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=6.1e-17 Score=159.87 Aligned_cols=261 Identities=9% Similarity=-0.063 Sum_probs=187.4
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 036704 274 NLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQ 353 (634)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (634)
+...|..+...+.+.|++++|...|+++.+.. +.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~------------------------------------------ 100 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAE------------------------------------------ 100 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH------------------------------------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHH------------------------------------------
Confidence 45668888888999999999999998887642 12233
Q ss_pred cCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 354 HQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
++..+...+...|++++|...++++.+.... +...+..+..+|...|++++|...+
T Consensus 101 -----------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 156 (365)
T 4eqf_A 101 -----------------------AWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTNTSHQQDACEAL 156 (365)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccccHHHHHHHH
Confidence 3444444455555555555555555544322 3445555555555555555555555
Q ss_pred hcCCC--C-----------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 434 NFMED--P-----------DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PNHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 434 ~~~~~--~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
+++.+ | ....+..+...+...|++++|...++++.+.... ++..++..+...+...|++++|...+
T Consensus 157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 236 (365)
T 4eqf_A 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236 (365)
T ss_dssp HHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55432 1 1223445677888999999999999999887422 15788999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 036704 500 RIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT- 576 (634)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~- 576 (634)
+++.+. .+.+..++..+..+|.+.|++++|++.++++ ...| +..++..++.+|...|++++|...++++++..|+
T Consensus 237 ~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 237 NAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999864 3446788999999999999999999999988 4444 5889999999999999999999999999998776
Q ss_pred -----------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 577 -----------NSAALVLLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 577 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (634)
+..+|..++.++...|+.+.|..+.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 315 RNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 477899999999999999999888764
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=5.4e-15 Score=153.53 Aligned_cols=215 Identities=8% Similarity=0.062 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhc-------cccHH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHhhc
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAA-------MASLE-------MGTQLHCYIMKTGLALDVFVMNGLMDMYVKC 423 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (634)
++..+|++..... +-+...|......+.+ .|+++ +|..++++..+.-.+-+...+..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4445555555431 4456667777766664 68876 8999999988632334688899999999999
Q ss_pred CChHHHHHHHhcCCC--CC-h-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcccCCHHHHHHH
Q 036704 424 GSLGSARELFNFMED--PD-V-VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA-CSHVGLVEEGLQL 498 (634)
Q Consensus 424 g~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~ 498 (634)
|++++|..+|+++.+ |+ . ..|..++..+.+.|+.++|..+|++..+.. +.+...|...+.. +...|++++|..+
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 999999999998763 43 2 478888888999999999999999999863 2233333332222 3358999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 499 YRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM----AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
|++..+.. +.+...+..++..+.+.|+.++|..+|++. +..| ....|...+......|+.+.+..+.+++.+
T Consensus 414 ~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 414 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998752 335788899999999999999999999998 2233 245888888888899999999999999999
Q ss_pred cCCC
Q 036704 573 IDPT 576 (634)
Q Consensus 573 ~~p~ 576 (634)
..|+
T Consensus 492 ~~p~ 495 (530)
T 2ooe_A 492 AFRE 495 (530)
T ss_dssp HTHH
T ss_pred HCch
Confidence 8884
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.3e-15 Score=156.07 Aligned_cols=387 Identities=10% Similarity=-0.064 Sum_probs=214.3
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCC-ChhhHHHHHHHhhcCCCchhHhHHHHHHHHhc------CC
Q 036704 148 SWTAMIAGCSQNGQENAAIELYVQMLQS-------GLMP-DQFTFGSIIRACSGLCCVGLGRQLHAHVIKSE------HG 213 (634)
Q Consensus 148 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~ 213 (634)
.||.|...+...|++++|++.|++..+. ...| ...+|+.+...+...|++++|...++++.+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 4555555555556666665555544321 1112 23456666666666777777766666655431 01
Q ss_pred C-ChhHHHHHHHHHHh--cCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHH---HHc
Q 036704 214 S-HLISQNALIAMYTK--FDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAG---VAS 287 (634)
Q Consensus 214 ~-~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~---~~~ 287 (634)
+ ...++..+..++.. .+++++|...|++..+.++ .++..+..+..+ +..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-------------------------~~~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-------------------------KNPEFTSGLAIASYRLDN 187 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-------------------------TCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHhcC
Confidence 1 22344444444444 3457778877776554333 234444444433 345
Q ss_pred CCChhHHHHHHHHHhhCCCCC-CHhHHHHHHHHh----cCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHH
Q 036704 288 CSNANEAMSLFSEMGDRELIP-DGLTVRSLLCAC----TSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRL 362 (634)
Q Consensus 288 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~ 362 (634)
.++.++|++.+++..+. .| +...+..+...+ ...++.+.|.+.++......
T Consensus 188 ~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---------------------- 243 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---------------------- 243 (472)
T ss_dssp SCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC----------------------
T ss_pred chHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC----------------------
Confidence 57777788887776653 33 233333333222 22344445555444443321
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh
Q 036704 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV 442 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 442 (634)
+.+...+..+...+...|++++|...+.++.+..+. +..++..+..+|...+....+ ... .
T Consensus 244 ---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~-----~~~-~--- 304 (472)
T 4g1t_A 244 ---------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMN-----LRE-N--- 304 (472)
T ss_dssp ---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHH-----C-------
T ss_pred ---------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhh-----HHH-H---
Confidence 445667788888888999999999999988877654 556666666555432111111 000 0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh----HHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE----RRSCV 518 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l 518 (634)
.........+..+.|...+++..+.. +.+..++..+...+...|++++|...|+++... .|+.. .+..+
T Consensus 305 ---~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~ 377 (472)
T 4g1t_A 305 ---GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRY 377 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHH
Confidence 00111112234577888888887764 334667788888999999999999999988753 33322 22233
Q ss_pred HH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 519 VD-LLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 519 ~~-~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
.. .+...|++++|++.|++. .+.|+...... ....+..++++.++.+|.++.+|..++.+|...|++++
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 32 234678999999999887 66665433222 23455677888889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcCCCCccEE
Q 036704 597 VARLMGSMKERGVRKVPGQSWI 618 (634)
Q Consensus 597 A~~~~~~~~~~g~~~~~~~~~~ 618 (634)
|++.+++.++.|-..+...+|+
T Consensus 449 A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 449 ADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999998775544344554
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=1.7e-16 Score=156.85 Aligned_cols=301 Identities=9% Similarity=-0.061 Sum_probs=169.9
Q ss_pred hcCChHHHHH-HHHHhhhcCCCCC--CcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChH
Q 036704 56 KQNLYNEALV-AFDFLQNNTNFRI--RPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLE 132 (634)
Q Consensus 56 ~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 132 (634)
-.|++++|++ .|+.........| +...+..+...+...|+++.|...++++.+.. +.+..++..+..++.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3477888888 8876664311122 34568888888888999999999999988775 556778888888888888888
Q ss_pred HHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHhhcCCCchhHhHHHHHHH
Q 036704 133 DARMVFDEMPQ---RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQF-TFGSIIRACSGLCCVGLGRQLHAHVI 208 (634)
Q Consensus 133 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (634)
+|...|++..+ .+..++..+...+...|++++|...++++.... |+.. .+..+... ..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~--------- 177 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh---------
Confidence 88888887652 456678888888888899999999998888754 3322 11111000 00
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcC
Q 036704 209 KSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASC 288 (634)
Q Consensus 209 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 288 (634)
...+. ..+..+...+ ..|++++|...|+++.+.++. .++..++..+...+...
T Consensus 178 --~~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~-----------------------~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 178 --GAGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPT-----------------------SIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT-----------------------SCCHHHHHHHHHHHHHT
T ss_pred --hhccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC-----------------------cccHHHHHHHHHHHHHc
Confidence 00000 0001111122 455555555555555433220 01345555666666666
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHH
Q 036704 289 SNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLA 368 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~ 368 (634)
|++++|...|+++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 231 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------------- 281 (368)
T 1fch_A 231 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ---------------------------- 281 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------
T ss_pred CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------
Confidence 66666666666654431 1123344444444444444444444444433321
Q ss_pred CCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC----------chhHHHHHHHHHhhcCChHHHHHHHh
Q 036704 369 SQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL----------DVFVMNGLMDMYVKCGSLGSARELFN 434 (634)
Q Consensus 369 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (634)
+.+...+..+..++...|++++|...++++.+..... ...++..+..++...|+.++|..++.
T Consensus 282 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 282 ---PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 2344556666667777777777777777666443221 14566666666666777766666655
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=3.1e-16 Score=154.74 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=195.6
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVG 450 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 450 (634)
+...+..+...+.+.|++++|...++++.+..+. +...+..+..++.+.|++++|...|+++.+ .+...|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3456888889999999999999999999988754 788899999999999999999999998763 457789999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPN-----------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.......++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998763 32 22233457788999999999999999997633223688899999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 597 (634)
..|...|++++|++.++++ ... .+..+|..++.+|...|++++|+..++++++..|+++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 333 46889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 036704 598 ARLMGSMKER 607 (634)
Q Consensus 598 ~~~~~~~~~~ 607 (634)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.1e-15 Score=144.47 Aligned_cols=273 Identities=8% Similarity=0.013 Sum_probs=210.0
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCH--hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHH
Q 036704 282 IAGVASCSNANEAMSLFSEMGDRELIPDG--LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGEL 359 (634)
Q Consensus 282 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a 359 (634)
|+-....|++..|+..++..... .|+. .....+..++...|+++.|...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------------------------ 59 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP------------------------ 59 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------------------------
Confidence 34456678999999988776443 4443 3445566778888877766653321
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC
Q 036704 360 FRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL-DVFVMNGLMDMYVKCGSLGSARELFNFMED 438 (634)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 438 (634)
.-+|+..++..+...+...++.++|.+.++++...+..| +...+..+...+...|++++|++.+++ .
T Consensus 60 ----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~ 127 (291)
T 3mkr_A 60 ----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--G 127 (291)
T ss_dssp ----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--C
T ss_pred ----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--C
Confidence 125667788889999999999999999999999877544 556677778899999999999999998 5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHH
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTL---VGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERR 515 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 515 (634)
.+...+..++..+.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...+
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~ 203 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLL 203 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHH
Confidence 667788999999999999999999999999874 553211 22334444568999999999999975 45578889
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDV-GKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+.+..++.+.|++++|.+.+++. ...| ++.++..++..+...|+.++ +.++++++++..|+++.+.. ...+.+
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~ 279 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKEN 279 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHH
Confidence 99999999999999999999997 4444 78889999999999999875 67899999999999987554 344555
Q ss_pred ChHHHHHH
Q 036704 593 KWEEVARL 600 (634)
Q Consensus 593 ~~~~A~~~ 600 (634)
.++++..-
T Consensus 280 ~fd~~~~~ 287 (291)
T 3mkr_A 280 DFDRLVLQ 287 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=4.1e-16 Score=151.24 Aligned_cols=230 Identities=10% Similarity=-0.072 Sum_probs=187.8
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC-hhhHHHH-
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PD-VVSWSSL- 447 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l- 447 (634)
+.+...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|.+.++.+.+ |+ ...+..+
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHh
Confidence 345567777788888888888888888888877543 677788888888888999988888887653 22 2223222
Q ss_pred -------------HH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChh
Q 036704 448 -------------IV-GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRE 513 (634)
Q Consensus 448 -------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 513 (634)
.. .+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++... .+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 207 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQ 207 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHH
Confidence 22 3777889999999999998874 336888999999999999999999999999864 234577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------Cch
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT------------NSA 579 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~ 579 (634)
.+..+...+...|++++|.+.++++ ...| +...+..++..+...|++++|...++++++..|. ++.
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS 287 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHH
Confidence 8889999999999999999999998 3334 6889999999999999999999999999999998 788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
++..++.++.+.|++++|..++++..
T Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 288 MWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999999987554
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=8.9e-16 Score=145.16 Aligned_cols=242 Identities=11% Similarity=0.045 Sum_probs=195.2
Q ss_pred HHhcCHhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHH
Q 036704 351 ILQHQAGELFRLFSLMLASQTKPDH--ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGS 428 (634)
Q Consensus 351 ll~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (634)
+..+++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 334566667666655432 23433 3456678899999999999986654 245577788889999999999999
Q ss_pred HHHHHhcCC----CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 429 ARELFNFME----DPD-VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 429 A~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
|.+.++.+. .|+ ...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999863 244 45667777899999999999999987 4578889999999999999999999999998
Q ss_pred HHhCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 504 NEYGIIPTRERR---SCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 504 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
+. .|+.... ..++..+...|++++|..+|+++ ..+.++..++.++.++...|++++|+..++++++.+|+++
T Consensus 158 ~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 158 DQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 65 3554322 23445555679999999999998 4445788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 036704 579 AALVLLCNIYASSGKWEE-VARLMGSMKER 607 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 607 (634)
.++..++.++...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999976 57899988764
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=2.6e-14 Score=146.38 Aligned_cols=384 Identities=11% Similarity=-0.034 Sum_probs=186.8
Q ss_pred CcccHHHHHHHhhccCChhHHHHHHHHHHHc-----C---CCCCcchhhHHHHHHHccCChHHHHHHhccCCC-------
Q 036704 79 RPSTYADLISACSSLRSLQLGRKVHDHILSS-----K---CQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ------- 143 (634)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 143 (634)
....|+.+..++...|++++|.+.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3445677777777777777777777765542 1 112234566666677777777777666654321
Q ss_pred ---C-CccchHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH---hhcCCCchhHhHHHHHHHHhcCC
Q 036704 144 ---R-NVVSWTAMIAGCSQ--NGQENAAIELYVQMLQSGLMPDQ-FTFGSIIRA---CSGLCCVGLGRQLHAHVIKSEHG 213 (634)
Q Consensus 144 ---~-~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 213 (634)
+ ...+++.+..++.. .+++++|+..|++..+.. |+. ..+..+..+ +...++.++|...+++..+...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11233333333333 346778888887776642 433 233333222 3345666677777776666532
Q ss_pred CChhHHHHHHHHHH----hcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCC
Q 036704 214 SHLISQNALIAMYT----KFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCS 289 (634)
Q Consensus 214 ~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 289 (634)
.+..++..+...+. ..|++++|.+.+++....++ .+...+..+...|...|
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-------------------------~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-------------------------GVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-------------------------SCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-------------------------cHHHHHHHHHHHHHHcC
Confidence 22333433333333 33556666666665443332 35566677777777777
Q ss_pred ChhHHHHHHHHHhhCCCCCC-HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHH
Q 036704 290 NANEAMSLFSEMGDRELIPD-GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLA 368 (634)
Q Consensus 290 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~ 368 (634)
++++|...+.+..+. .|+ ..++..+.
T Consensus 262 ~~~~A~~~~~~al~~--~p~~~~~~~~lg--------------------------------------------------- 288 (472)
T 4g1t_A 262 EPDKAIELLKKALEY--IPNNAYLHCQIG--------------------------------------------------- 288 (472)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHH---------------------------------------------------
T ss_pred chHHHHHHHHHHHHh--CCChHHHHHHHH---------------------------------------------------
Confidence 777777777776543 232 22222221
Q ss_pred CCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC---CCChhhHH
Q 036704 369 SQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME---DPDVVSWS 445 (634)
Q Consensus 369 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 445 (634)
.++...+....+. . ...........+..+.|...++... ..+...+.
T Consensus 289 --------------~~y~~~~~~~~~~---------~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 338 (472)
T 4g1t_A 289 --------------CCYRAKVFQVMNL---------R-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338 (472)
T ss_dssp --------------HHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH
T ss_pred --------------HHHHHHHHHhhhH---------H-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh
Confidence 1111100000000 0 0000000001112334444444432 23345677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV--TLVGVLT-ACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
.+...|...|++++|...|++..+....|... .+..+.. .....|+.++|+..|++..+ +.|+.......
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---- 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---- 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH----
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH----
Confidence 77777888888888888888877764333211 1222222 23467888888888888773 45554332222
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 523 ARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
...+.+++++. . .+.++.+|..++.+|...|++++|++.|+++++..|.+|.+...++
T Consensus 412 -----~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 -----KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 22334444443 2 2336778999999999999999999999999999998887776654
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.5e-14 Score=134.85 Aligned_cols=221 Identities=9% Similarity=0.014 Sum_probs=192.6
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C----C----hhhH
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P----D----VVSW 444 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~ 444 (634)
...+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...++...+ | + ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778889999999999999999999888 6888999999999999999999999998763 2 2 4678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036704 445 SSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR 524 (634)
Q Consensus 445 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (634)
..+...+...|++++|...++++.+. .|+. ..+...|++++|...++.+... .+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 88999999999999999999999986 4553 3456678899999999998852 23356678889999999
Q ss_pred cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 525 AGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
.|++++|.+.++++ . .+.+..++..++..+...|++++|+..++++++..|+++.++..++.++.+.|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999998 3 334688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 036704 603 SMKERG 608 (634)
Q Consensus 603 ~~~~~g 608 (634)
++.+..
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 987643
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=8.5e-15 Score=132.19 Aligned_cols=195 Identities=17% Similarity=0.073 Sum_probs=152.7
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036704 407 ALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVL 483 (634)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 483 (634)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34666777788888888888888888887653 345678888888889999999999999988874 22567788888
Q ss_pred HHhccc-----------CCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 036704 484 TACSHV-----------GLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVVWKSL 550 (634)
Q Consensus 484 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 550 (634)
..+... |++++|...+++..+. .| +...+..+..+|...|++++|++.|++. ....++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999864 44 5678888999999999999999999988 211788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 551 LASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 551 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
..++...|++++|+..++++++..|+++.++..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998654
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=2e-14 Score=139.19 Aligned_cols=230 Identities=13% Similarity=0.023 Sum_probs=195.5
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVG 450 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 450 (634)
+...+..+...+...|++++|..+++++.+.... +...+..+..++...|++++|...++++.+ .+...+..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 3345677788899999999999999999987654 778888899999999999999999998763 456788899999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH--------------HH-HhcccCCHHHHHHHHHHHHHHhCCCCChhH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGV--------------LT-ACSHVGLVEEGLQLYRIMQNEYGIIPTRER 514 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 514 (634)
+...|++++|...++++.+.. |+ ...+..+ .. .+...|++++|...++++.+. .+.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 999999999999999999874 33 3333332 22 377889999999999999864 2346788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+..+...+.+.|++++|.+.++++ ... .+...+..++..+...|++++|...++++++..|.++.++..++.++.+.|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999998 333 468899999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 036704 593 KWEEVARLMGSMKERG 608 (634)
Q Consensus 593 ~~~~A~~~~~~~~~~g 608 (634)
++++|.+.++++.+..
T Consensus 255 ~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC
Confidence 9999999999988643
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=165.54 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=111.4
Q ss_pred CcchhhHHHHHHHccCChHHHHHHhccCC-------CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 036704 114 DAVLHNHILNMYGKCGSLEDARMVFDEMP-------QRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGS 186 (634)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 186 (634)
-..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999997653 58999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCc-hhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 036704 187 IIRACSGLCCV-GLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNV 238 (634)
Q Consensus 187 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 238 (634)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999985 78999999999999999999999998877665444444333
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=5.3e-16 Score=161.39 Aligned_cols=151 Identities=11% Similarity=0.049 Sum_probs=120.4
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh---CCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHH
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGD---RELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAI 351 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 351 (634)
..+||+||.+|++.|++++|.++|.+|.+ .|+.||..||+++|.+|++.|++++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~e----------------------- 183 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE----------------------- 183 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHH-----------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHH-----------------------
Confidence 46899999999999999999999988764 5899999999999999999996555
Q ss_pred HhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcccc-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHH
Q 036704 352 LQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMAS-LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAR 430 (634)
Q Consensus 352 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (634)
|.++|++|.+.|+.||..||+++|.++++.|+ .+.|.+++++|.+.|+.||..+|++++....+.+-++.+.
T Consensus 184 -------A~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 184 -------LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp -------HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred -------HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH
Confidence 55556666667789999999999999999997 5789999999999999999999999998777765555444
Q ss_pred HHHhcCCC-----CChhhHHHHHHHHHhcC
Q 036704 431 ELFNFMED-----PDVVSWSSLIVGYAQFG 455 (634)
Q Consensus 431 ~~~~~~~~-----~~~~~~~~l~~~~~~~~ 455 (634)
++...+.- +...+...|.+.|.+.+
T Consensus 257 kv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 257 KVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp GGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 44333331 12334455566666544
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=2.9e-13 Score=127.46 Aligned_cols=238 Identities=9% Similarity=-0.071 Sum_probs=189.1
Q ss_pred CHhHHHHHHHHHHHCCC---CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHH
Q 036704 355 QAGELFRLFSLMLASQT---KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARE 431 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (634)
++++|+..++++.+... +.+..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|..
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHH
Confidence 55666666666665432 124567888899999999999999999999988754 78889999999999999999999
Q ss_pred HHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 432 LFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 432 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
.|+.+.+ .+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++.... .
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~ 174 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--S 174 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence 9998763 45778999999999999999999999999986 455545455555667789999999999888864 3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 509 IPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD-----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
+++...+ .++..+...++.++|.+.+++. ...|+ ...+..++..|...|++++|...++++++..|.+...+
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 252 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH- 252 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH-
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH-
Confidence 3444444 4777888889999999999987 33332 57888999999999999999999999999999876544
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 036704 583 LLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~ 601 (634)
+.++...|++++|++.+
T Consensus 253 --~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 --RYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHhhHHHH
Confidence 55788889999998876
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=1.3e-12 Score=122.71 Aligned_cols=224 Identities=7% Similarity=-0.062 Sum_probs=194.5
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSSLI 448 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~ 448 (634)
+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45677778888899999999999999999833 56777888888999 9999999999998763 4677888899
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 449 VGYAQ----FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 449 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 77888888888888 99999999999999864 3 5667778888
Q ss_pred HHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh--
Q 036704 521 LLAR----AGRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS-- 590 (634)
Q Consensus 521 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 590 (634)
.|.. .+++++|.+.+++.-...++..+..+...|.. .+++++|+..++++.+..| +.++..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999988323467888899999999 9999999999999999876 7789999999999
Q ss_pred --cCChHHHHHHHHHHHhCCC
Q 036704 591 --SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 591 --~g~~~~A~~~~~~~~~~g~ 609 (634)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999988764
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.4e-13 Score=125.56 Aligned_cols=239 Identities=10% Similarity=-0.050 Sum_probs=174.9
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhc
Q 036704 275 LASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQH 354 (634)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 354 (634)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+..+.+....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------ 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE------------ 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc------------
Confidence 4567888999999999999999999998876 77888999999999999999999888877653210
Q ss_pred CHhHHHHHHHHHHHCCCCCC----HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHH
Q 036704 355 QAGELFRLFSLMLASQTKPD----HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAR 430 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (634)
..++ ..++..+...+...|++++|...++++.+....
T Consensus 71 ----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------- 111 (258)
T 3uq3_A 71 ----------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------- 111 (258)
T ss_dssp ----------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------------
T ss_pred ----------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------------------
Confidence 0111 345666666667777777777777766654322
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 431 ELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 431 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
...+...|++++|...++++.... +.+...+..+...+...|++++|...++++... .+.
T Consensus 112 -----------------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~ 171 (258)
T 3uq3_A 112 -----------------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APE 171 (258)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred -----------------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--Ccc
Confidence 123444566677777777776652 223556677777777888888888888887754 233
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKID------PTNSAALV 582 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~ 582 (634)
+...+..+..++.+.|++++|.+.+++. ...| +...+..+...+...|++++|...++++++.. |.+..++.
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~ 251 (258)
T 3uq3_A 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ 251 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHH
Confidence 5667777888888888888888888877 3333 57788888999999999999999999999887 77776666
Q ss_pred HHHH
Q 036704 583 LLCN 586 (634)
Q Consensus 583 ~l~~ 586 (634)
.+..
T Consensus 252 ~l~~ 255 (258)
T 3uq3_A 252 LYYK 255 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=3.4e-12 Score=128.85 Aligned_cols=378 Identities=8% Similarity=-0.031 Sum_probs=189.5
Q ss_pred HHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCCh---HHHHHHhccCCCCCccchHHHHHHHHhCC--
Q 036704 86 LISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSL---EDARMVFDEMPQRNVVSWTAMIAGCSQNG-- 160 (634)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 160 (634)
+...+.+.|++++|.++|++..+.| ++..+..+...|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556677788888888888887776 334445555666667777 78888888777666667777766555554
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHh---HHHHHHHHhcCCCChhHHHHHHHHHHhcCChhH
Q 036704 161 ---QENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGR---QLHAHVIKSEHGSHLISQNALIAMYTKFDRILD 234 (634)
Q Consensus 161 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 234 (634)
++++|...|++..+.|. |+ .+..|...+...+..+.+. ..+......|
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----------------------- 139 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----------------------- 139 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-----------------------
T ss_pred CCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-----------------------
Confidence 67788888888887663 22 3444444444333332222 2222222222
Q ss_pred HHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHH
Q 036704 235 AWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVR 314 (634)
Q Consensus 235 A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 314 (634)
++..+..|...|...+.++++........+.-.
T Consensus 140 ---------------------------------------~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~-------- 172 (452)
T 3e4b_A 140 ---------------------------------------YPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL-------- 172 (452)
T ss_dssp ---------------------------------------CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT--------
T ss_pred ---------------------------------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--------
Confidence 222233333333333333322222111111000
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc---cH
Q 036704 315 SLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMA---SL 391 (634)
Q Consensus 315 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~ 391 (634)
..++..+..+...+...| +.
T Consensus 173 ---------------------------------------------------------~~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 173 ---------------------------------------------------------NTTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp ---------------------------------------------------------TTCTTHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------------------------------------------cCCHHHHHHHHHHHHHcCCcccH
Confidence 001112333333333344 45
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc----CChHHHHHHHhcCCCCChhhHHHHHHH-H--HhcCChHHHHHHH
Q 036704 392 EMGTQLHCYIMKTGLALDVFVMNGLMDMYVKC----GSLGSARELFNFMEDPDVVSWSSLIVG-Y--AQFGCGEEALKLF 464 (634)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~ 464 (634)
++|...+++..+.|.. +...+..+...|... ++.++|...|+.....++..+..|... + ...+++++|..+|
T Consensus 196 ~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 5555555555554432 333333444444333 456666666665552333445555554 3 3467777788887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHH
Q 036704 465 RRMRSSGVRPNHVTLVGVLTACSHVG-----LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR----AGRVHEAEDFI 535 (634)
Q Consensus 465 ~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 535 (634)
++..+.| +...+..+...|. .| ++++|.+.|++.. .-+......|...|.. ..++++|.++|
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 7777765 4555555555555 44 7788887777664 2345556666666655 34788888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 536 NQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 536 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++.....++.....+...|.. ..|.++|...++++.+..+.........+......++.++|..+.++.++
T Consensus 346 ~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 346 LTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 877333445556666666653 35788888888888876654333222222222333466777777776654
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.5e-13 Score=126.63 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=95.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 036704 413 MNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489 (634)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 489 (634)
+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33334444444444444444443321 223344445555555555555555555555442 22345555555555555
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAA 567 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 567 (634)
|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.++++ .. +.+...+..++..+...|++++|+..+
T Consensus 105 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5566665555555543 1223445555555555666666666665555 21 224555555666666666666666666
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 568 ENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 568 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+++++..|.++.++..++.+|.+.|++++|.+.++++.+
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 666666666666666666666666666666666666554
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.6e-13 Score=126.45 Aligned_cols=216 Identities=13% Similarity=0.047 Sum_probs=166.3
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIV 449 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 449 (634)
.....+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+ .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 44567778888999999999999999999986544 678888899999999999999999998763 46678889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVH 529 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 529 (634)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998874 346788889999999999999999999999864 3346778889999999999999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 530 EAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 530 ~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+|.+.++++ .. +.+..++..++..|...|++++|...++++++..|+++.++..+..+....|
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999999988 33 3468899999999999999999999999999999999998888766544433
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=7.1e-13 Score=124.55 Aligned_cols=215 Identities=11% Similarity=-0.032 Sum_probs=138.7
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALD--VFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLI 448 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 448 (634)
+...+..+..++...|++++|...++++.+.+..++ ...+..+...+...|++++|...|+...+ .+...|..+.
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 115 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG 115 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 334666677777777788888877777776332222 23366777777777777777777776652 3445677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR- 527 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 527 (634)
..|...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++++.+. .+.+...+..+..++...|+
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPD 192 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcc
Confidence 77777788888887777777652 224555555552333345788888887777753 22235556666666666666
Q ss_pred --hHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 528 --VHEAEDFINQM----AFDDD------IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 528 --~~~A~~~~~~~----~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
+++|...+++. ...|+ ..++..+...|...|++++|.+.++++++.+|+++.++..+.......
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 66677776665 22233 246667777777888888888888888888888887777776654433
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=7e-13 Score=123.00 Aligned_cols=196 Identities=11% Similarity=-0.012 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455555666666666666666665542 344566666677777777777777777776653 22456666677777
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036704 487 SHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 563 (634)
...|++++|.+.++++... +..| +...+..+...+...|++++|.+.++++ ...| +...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776641 2344 3455666677777777777777777776 2223 466777777777777888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 564 KRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
...++++++..|.+...+..++.++.+.|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888877777777777777777777778888888877777664
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.1e-12 Score=119.15 Aligned_cols=196 Identities=12% Similarity=0.032 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
...+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33444455555555555555555554431 234456666666666677777777777666653 22456666667777
Q ss_pred ccc-CCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036704 487 SHV-GLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDV 562 (634)
Q Consensus 487 ~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 562 (634)
... |++++|...++++... +..|+ ...+..+..++...|++++|.+.++++ ...| +...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 7777777777777641 23332 455666677777777777777777766 2223 46677777777777888888
Q ss_pred HHHHHHHHHhcCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 563 GKRAAENILKIDP-TNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 563 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888877777 77777777777777778888887777777643
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.1e-12 Score=115.03 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=145.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 440 DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 440 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678889999999999999999999998874 225788889999999999999999999998864 334566777788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 597 (634)
..+...++++.|.+.+++. ...| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999987 3334 6788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 036704 598 ARLMGSMKER 607 (634)
Q Consensus 598 ~~~~~~~~~~ 607 (634)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=2.2e-12 Score=119.67 Aligned_cols=207 Identities=7% Similarity=-0.066 Sum_probs=177.9
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHH
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGY 451 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 451 (634)
...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++++.+ .+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 456778888999999999999999999987644 678888999999999999999999998753 4667888999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 530 (634)
...|++++|.++++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988434554 677888889999999999999999999865 23457788899999999999999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 531 AEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 531 A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
|.+.++++ ... .+...+..+...+...|++++|.+.++++.+..|+++.....+
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999998 434 4677888899999999999999999999999999988765543
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=7.5e-13 Score=124.39 Aligned_cols=228 Identities=5% Similarity=-0.079 Sum_probs=187.5
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChh----hHHHHHH
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVV----SWSSLIV 449 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~ 449 (634)
..+......+...|++++|...++++.+..+. +...+..+..++...|++++|...++...+ ++.. .|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556677888999999999999999987654 566788888899999999999999998754 2322 3888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCh
Q 036704 450 GYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRV 528 (634)
Q Consensus 450 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 528 (634)
.+...|++++|+..+++..+.. +.+..++..+...+...|++++|...++++.+ ..| +...+..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 33578899999999999999999999999874 344 566677777344455699
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhcCChH
Q 036704 529 HEAEDFINQM-AFDD-DIVVWKSLLASCKTHGN---VDVGKRAAENILKID---PTN-----SAALVLLCNIYASSGKWE 595 (634)
Q Consensus 529 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 595 (634)
++|.+.++++ ...| +...+..+...+...|+ +++|...++++++.. |+. ..++..++.+|.+.|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998 4444 57788888999988888 888999999998865 442 258888999999999999
Q ss_pred HHHHHHHHHHhCC
Q 036704 596 EVARLMGSMKERG 608 (634)
Q Consensus 596 ~A~~~~~~~~~~g 608 (634)
+|.+.++++.+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998754
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=3.7e-12 Score=115.62 Aligned_cols=209 Identities=9% Similarity=-0.052 Sum_probs=178.2
Q ss_pred CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 036704 373 PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIV 449 (634)
Q Consensus 373 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 449 (634)
.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+ .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34567888889999999999999999999987654 677888999999999999999999998753 45678889999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 450 GYAQF-GCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 450 ~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 99999 999999999999998433444 677888899999999999999999999864 23357788899999999999
Q ss_pred hHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 528 VHEAEDFINQM-AF-D-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 528 ~~~A~~~~~~~-~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
+++|.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.+..|+++.+...+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999988 22 3 4677788888888999999999999999999999988776554
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=6.7e-13 Score=129.65 Aligned_cols=226 Identities=11% Similarity=0.060 Sum_probs=194.5
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC-hHHHHHHHhcCCC---CChhhHHHHHHHH
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGS-LGSARELFNFMED---PDVVSWSSLIVGY 451 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 451 (634)
..+..+...+...|++++|...++++++.... +...|+.+..++...|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46777778888999999999999999998765 78889999999999997 9999999998863 4567899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChHH
Q 036704 452 AQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR-AGRVHE 530 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 530 (634)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++.+. -+-+...|+.+..++.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999874 336888999999999999999999999999964 23367788899999999 666588
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC--------C
Q 036704 531 A-----EDFINQM-AFDD-DIVVWKSLLASCKTHG--NVDVGKRAAENILKIDPTNSAALVLLCNIYASSG--------K 593 (634)
Q Consensus 531 A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~ 593 (634)
| ++.+++. ...| +...|..+...+...| ++++|++.++++ +..|+++.++..++.+|.+.| +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 8 4778777 4455 6789999999998888 689999999998 999999999999999999875 2
Q ss_pred -hHHHHHHHHHH-Hh
Q 036704 594 -WEEVARLMGSM-KE 606 (634)
Q Consensus 594 -~~~A~~~~~~~-~~ 606 (634)
.++|.++++++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 58999999998 54
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=8.3e-13 Score=119.07 Aligned_cols=195 Identities=16% Similarity=0.082 Sum_probs=155.5
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-ChhhHHHHH
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVVSWSSLI 448 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 448 (634)
+++...+..+...+...|++++|...++++++..+. +...+..+..++.+.|++++|...+++..+ | +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 566677888888999999999999999999987655 778888999999999999999999998763 4 456788899
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHH
Q 036704 449 VGYAQF-----------GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSC 517 (634)
Q Consensus 449 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 517 (634)
..+... |++++|+..+++..+.. +-+...+..+..++...|++++|...|+++.+. . .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHH
Confidence 999999 99999999999999873 225778888999999999999999999999976 4 77888999
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
+..+|...|++++|+..+++. ...| +...+..+...+...|++++|+..++++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999998 4444 67889999999999999999999988764
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=8.4e-13 Score=124.23 Aligned_cols=219 Identities=12% Similarity=-0.024 Sum_probs=181.0
Q ss_pred hhccccHHHHHHHHHHHHHhCCC---CchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChH
Q 036704 385 CAAMASLEMGTQLHCYIMKTGLA---LDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGE 458 (634)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 458 (634)
....|++++|...++++.+.... .+..++..+...+...|++++|...|+.+.+ .+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 45678999999999999976432 2466788899999999999999999998763 45778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 459 EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999874 335788999999999999999999999999864 455545555556667789999999999776
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 539 --AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT----NSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 539 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
..+++... ..++..+...++.++|...++++++..|. ++.++..++.+|.+.|++++|...++++.+.+
T Consensus 171 ~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 22333333 34777788889999999999999887664 37889999999999999999999999998754
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=3.5e-12 Score=124.61 Aligned_cols=215 Identities=9% Similarity=0.028 Sum_probs=181.1
Q ss_pred CCCHhHHHHHHHHhhcccc-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHH
Q 036704 372 KPDHITFNDVMGACAAMAS-LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSL 447 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 447 (634)
+-+...|..+..++...|+ +++|...++++++.... +...|..+..++...|++++|+..|+++.+ .+...|..+
T Consensus 128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l 206 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence 4456788888899999996 99999999999998866 788899999999999999999999998873 566789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-cCCHHHH-----HHHHHHHHHHhCCCC-ChhHHHHHHH
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH-VGLVEEG-----LQLYRIMQNEYGIIP-TRERRSCVVD 520 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~ 520 (634)
..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++| +..++++... .| +...|..+..
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ 282 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKG 282 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 999999999999999999999974 2367888888888888 5665777 4788888753 44 5678888888
Q ss_pred HHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HhcCCCCchhHHHHHHH
Q 036704 521 LLARAG--RVHEAEDFINQMAFDD-DIVVWKSLLASCKTHG--------N-VDVGKRAAENI-LKIDPTNSAALVLLCNI 587 (634)
Q Consensus 521 ~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~ 587 (634)
++...| ++++|++.++++...| +...+..++..|...| + +++|+++++++ .+.+|.....|..++..
T Consensus 283 ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 283 ILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 362 (382)
T ss_dssp HHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 899888 6999999999884445 5778889999998874 3 59999999999 89999999999999887
Q ss_pred HHhc
Q 036704 588 YASS 591 (634)
Q Consensus 588 ~~~~ 591 (634)
+..+
T Consensus 363 l~~~ 366 (382)
T 2h6f_A 363 LQSK 366 (382)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=3.3e-11 Score=121.63 Aligned_cols=221 Identities=10% Similarity=-0.008 Sum_probs=164.0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC---ChHHHHHHHhcCCC---CChhhHHHHHHH
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG---SLGSARELFNFMED---PDVVSWSSLIVG 450 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~ 450 (634)
....+...+...+.++.+......+.+.-...++..+..+...|...| +.++|.+.|+...+ ++...+..|...
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~ 222 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455555555533333333222222222234448888888999999 89999999987753 344444667777
Q ss_pred HHhc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-h--cccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036704 451 YAQF----GCGEEALKLFRRMRSSGVRPNHVTLVGVLTA-C--SHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA 523 (634)
Q Consensus 451 ~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (634)
|... +++++|..+|++.. .| ++..+..+... + ...+++++|.+.|++..+. | +......|...|.
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY 294 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH
Confidence 7655 79999999999988 43 45555556555 3 5689999999999999864 4 5667777887777
Q ss_pred hcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----
Q 036704 524 RAG-----RVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS---- 590 (634)
Q Consensus 524 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 590 (634)
.| ++++|.++|++.. ..++.....+...|.. ..++++|...|+++.+. .++.+...|+.+|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTB
T ss_pred -cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCC
Confidence 55 9999999999998 7788899999988876 34999999999998874 467788999999885
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 036704 591 SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 591 ~g~~~~A~~~~~~~~~~g~ 609 (634)
..+.++|...+++..+.|.
T Consensus 371 ~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 3589999999999988875
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=8.3e-13 Score=134.24 Aligned_cols=208 Identities=11% Similarity=0.003 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCh-HHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSL-GSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRR 466 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 466 (634)
++.+...++...... +.+...+..+...+...|++ ++|++.|++..+ .+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555565544333 23677778888888888888 888888887652 3466888999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHhccc---------CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--------CChH
Q 036704 467 MRSSGVRPNHVTLVGVLTACSHV---------GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA--------GRVH 529 (634)
Q Consensus 467 m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 529 (634)
..+. .|+...+..+...+... |++++|...++++.+. .+.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9987 57778888999999999 9999999999999864 233577888899999988 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 530 EAEDFINQM-AFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 530 ~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (634)
+|++.|++. ...| +...|..+..+|...|++++|+..++++++.+|+++.++..++.++...|++++|.+.+++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998 4344 7889999999999999999999999999999999999999999999999999999975543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=2.5e-12 Score=128.67 Aligned_cols=298 Identities=12% Similarity=0.011 Sum_probs=181.2
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC----HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD----GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVC 348 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 348 (634)
+....+......+...|++++|...|++..+.+. .+ ...+..+...+...|+++.|...++.+.+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------- 75 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT---------- 75 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------
Confidence 3445566777888889999999999988877532 12 24566666677777777777666554432
Q ss_pred hHHHhcCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHhh
Q 036704 349 NAILQHQAGELFRLFSLMLASQTKPD-HITFNDVMGACAAMASLEMGTQLHCYIMKTGLA-----LDVFVMNGLMDMYVK 422 (634)
Q Consensus 349 ~~ll~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~ 422 (634)
+... .+-.|. ..++..+...+...|++++|...+.++.+.... ....++..+...|..
T Consensus 76 -------------~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 76 -------------LART---IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp -------------HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHh---ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 2211 121222 345666777777888888888888777643111 113356666777777
Q ss_pred cCC--------------------hHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-
Q 036704 423 CGS--------------------LGSARELFNFMED-----PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV- 472 (634)
Q Consensus 423 ~g~--------------------~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~- 472 (634)
.|+ +++|...++...+ ++ ...+..+...|...|++++|...+++..+...
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 777 7777776665431 11 22566666777777777777777777654310
Q ss_pred CCC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 036704 473 RPN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AF 540 (634)
Q Consensus 473 ~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 540 (634)
.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++. ..
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 235666667777777777777777766543111111 345566667777777777777777665 11
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCChHHH
Q 036704 541 DDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS------AALVLLCNIYASSGKWEEV 597 (634)
Q Consensus 541 ~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A 597 (634)
.++ ..++..+...|...|++++|...++++++..+... .++..++.++...|+...+
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 111 44666667777777777777777777777766652 2445555555555554433
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=9.5e-13 Score=132.02 Aligned_cols=231 Identities=11% Similarity=-0.006 Sum_probs=176.6
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----C----Ch
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKT----GL-ALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----P----DV 441 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~ 441 (634)
..+..+...+...|++++|...++++.+. +. +.....+..+...|...|++++|...+++..+ . ..
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 35677778888889999999988887743 11 22345677788888999999999998887653 1 23
Q ss_pred hhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGC-----------------GEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
..+..+...|...|+ +++|...+++..+. +-.| ...++..+...+...|++++|...+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 367778888999999 89998888886542 1112 2357778888899999999999999
Q ss_pred HHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036704 500 RIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AFDD----DIVVWKSLLASCKTHGNVDVGKRAA 567 (634)
Q Consensus 500 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 567 (634)
++......-.++ ...+..+...|...|++++|.+.+++. .... ...++..+...+...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988754221122 236778889999999999999999887 1111 2567888999999999999999999
Q ss_pred HHHHhcCCC------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 568 ENILKIDPT------NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 568 ~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+++++..+. ...++..++.+|.+.|++++|.+.+++..+
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999886443 245888999999999999999999998864
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=2.9e-11 Score=113.56 Aligned_cols=191 Identities=9% Similarity=-0.081 Sum_probs=146.8
Q ss_pred HHHHHHHhhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh----cCChHHHHHHHhcCCC-CChhhHHHHH
Q 036704 378 FNDVMGACAA----MASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK----CGSLGSARELFNFMED-PDVVSWSSLI 448 (634)
Q Consensus 378 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~ 448 (634)
+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 117 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG 117 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 3334444555 677777777777777665 56666777777777 7888888888776653 4566777788
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 449 VGYAQ----FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 449 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
..|.. .+++++|+.+|++..+.+ +...+..+...+.. .+++++|...+++..+. + +...+..+..
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 190 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGN 190 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHH
Confidence 88888 889999999999988875 56667777777777 88999999999988864 2 4567778888
Q ss_pred HHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 036704 521 LLAR----AGRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 521 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.|.. .+++++|++.+++.-...+...+..+...|.. .+++++|.+.++++.+..|+++
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8888 99999999999987222347788888899988 8999999999999999888644
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=3.6e-12 Score=123.71 Aligned_cols=232 Identities=14% Similarity=0.044 Sum_probs=177.2
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----h
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKT----GLAL-DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD----V 441 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~ 441 (634)
..+..+...+...|+++.|...++++.+. +..+ ...++..+...+...|++++|...+++..+ ++ .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 45677778888889999998888887633 2222 245677788888999999999988887652 22 2
Q ss_pred hhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHHHHH
Q 036704 442 VSWSSLIVGYAQFGC--------------------GEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVEEGL 496 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~ 496 (634)
.++..+...+...|+ +++|...+++..+. +-.| ...++..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 367778888888898 89998888876542 1111 1456778888899999999999
Q ss_pred HHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 036704 497 QLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AFDDD----IVVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~ 564 (634)
..+++......-.++ ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999988754211122 336778889999999999999999887 11122 557788899999999999999
Q ss_pred HHHHHHHhcCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 565 RAAENILKIDPTN------SAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 565 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
..++++++..|.. ..++..++.+|.+.|++++|.+.+++..+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999998865432 458889999999999999999999998864
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=1.3e-09 Score=113.66 Aligned_cols=218 Identities=6% Similarity=-0.029 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHH-HHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcC
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGT-QLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFM 436 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (634)
++..+|++.... ++-+...|-..+.-+...|+.+.|. .++++.....+ .+...+-..+....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344556666554 2446667777777777788888886 99999987543 46677778888888999999999999987
Q ss_pred CC-------------CC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-cC
Q 036704 437 ED-------------PD------------VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH-VG 490 (634)
Q Consensus 437 ~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g 490 (634)
.+ |+ ...|...+....+.|+.+.|..+|++..+....+....|...+..-.+ .+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 53 31 235777788888889999999999999876112233444433332223 35
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD----DIVVWKSLLASCKTHGNVDVGKR 565 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~ 565 (634)
+.+.|.++|+...+.+ +.+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6999999999999863 345666778888888999999999999998 3333 34578888888889999999999
Q ss_pred HHHHHHhcCCCCch
Q 036704 566 AAENILKIDPTNSA 579 (634)
Q Consensus 566 ~~~~~~~~~p~~~~ 579 (634)
+.+++.+..|+++.
T Consensus 563 v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 563 LEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHSTTCCH
T ss_pred HHHHHHHhCCCCcH
Confidence 99999999998764
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=3e-12 Score=128.06 Aligned_cols=256 Identities=8% Similarity=-0.043 Sum_probs=141.5
Q ss_pred hccchHHHHHhcCCC--CC-----hhhHHHHHHHHHcCCChhHHHHHHHHHhhCC--CCCCH---hHHHHHHHHhcCCCC
Q 036704 258 SKLDFARTVFNEMES--PN-----LASWNTIIAGVASCSNANEAMSLFSEMGDRE--LIPDG---LTVRSLLCACTSPLS 325 (634)
Q Consensus 258 ~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~---~~~~~ll~~~~~~g~ 325 (634)
++.+.|...|++..+ |+ ...|..+...+...|++++|...+++..... ...+. ..+..+...+...|+
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 334456555554432 22 2456666777777777777777777654321 11111 234444555556666
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcccc---------------
Q 036704 326 LYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMAS--------------- 390 (634)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------------- 390 (634)
++.|...+....+. ..... .......++..+...+...|+
T Consensus 103 ~~~A~~~~~~al~~-----------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 103 FDEAIVCCQRHLDI-----------------------SRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHHHHHHHHHHHHH-----------------------HHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HHHHHHHHHHHHHH-----------------------HHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 66666555444332 11110 001113356666667777777
Q ss_pred -----HHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHH
Q 036704 391 -----LEMGTQLHCYIMKT----GLAL-DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD----VVSWSSLIVGY 451 (634)
Q Consensus 391 -----~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~ 451 (634)
++.|...+.+..+. +..+ ...++..+...+...|++++|...+++..+ ++ ..++..+...|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 77777777666532 1111 123556666677777777777777766542 22 12566666677
Q ss_pred HhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHH
Q 036704 452 AQFGCGEEALKLFRRMRSSGVR-PN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLL 522 (634)
Q Consensus 452 ~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 522 (634)
...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..++..+...|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 7777777777777766543100 11 345666666777777777777777766543211112 34555666777
Q ss_pred HhcCChHHHHHHHHhC
Q 036704 523 ARAGRVHEAEDFINQM 538 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~ 538 (634)
...|++++|.+.+++.
T Consensus 318 ~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 7777777777776665
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=1.2e-11 Score=122.68 Aligned_cols=225 Identities=7% Similarity=0.008 Sum_probs=171.6
Q ss_pred HHHHhhccccHHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC-----hhhHH
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKT----GLAL-DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD-----VVSWS 445 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 445 (634)
....+...|++++|...++++.+. +-++ ...++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677889999999999998853 2111 345788888999999999999988887652 22 23678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh---CC-CCChhHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGVR-PN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY---GI-IPTRERRS 516 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 516 (634)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999999987754211 12 3478888899999999999999999887521 22 22356678
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQM----AF--DD-DIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~----~~--~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
.+...|.+.|++++|.+.+++. .. .| ....+..+...+...|+ +++|+..+++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999887 11 12 22345677888888898 78888888776 334445668889999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 036704 587 IYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~ 606 (634)
+|.+.|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=3.2e-11 Score=105.53 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA 523 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (634)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444555555566666666665555432 224555556666666666666666666666543 2234555666666677
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 036704 524 RAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
..|++++|.+.++++ ..+.+...+..++..+...|++++|...++++++..|.++.++..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777666 223356777888888888889999999999988888888888888998899999999999988
Q ss_pred HHHHhCC
Q 036704 602 GSMKERG 608 (634)
Q Consensus 602 ~~~~~~g 608 (634)
+++.+..
T Consensus 168 ~~~~~~~ 174 (186)
T 3as5_A 168 KKANELD 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 8887643
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=3.8e-09 Score=110.21 Aligned_cols=216 Identities=9% Similarity=-0.086 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHH-HHHhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSAR-ELFNFMED--P-DVVSWSSLIVGYAQFGCGEEALKLFRR 466 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 466 (634)
.+.+..+|++++..... ....|-..+..+...|+.++|. ++|++... | +...|-..+....+.|+++.|..+|++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34566778888876543 7788888888888899999996 99988763 3 444577788888899999999999999
Q ss_pred HHhCCC---------CCC------------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 036704 467 MRSSGV---------RPN------------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA 525 (634)
Q Consensus 467 m~~~~~---------~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (634)
+..... .|+ ...|...+....+.|+.+.|..+|.++.+.. ......+|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHh
Confidence 886410 132 2357777777778899999999999998641 122334444333333444
Q ss_pred -CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCChHHHHH
Q 036704 526 -GRVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT---NSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 526 -g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
++.+.|.++|+.. ..+.+...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+..
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4599999999988 33346777788888888899999999999999998873 55678888888889999999999
Q ss_pred HHHHHHhCC
Q 036704 600 LMGSMKERG 608 (634)
Q Consensus 600 ~~~~~~~~g 608 (634)
+.+++.+.-
T Consensus 563 v~~R~~~~~ 571 (679)
T 4e6h_A 563 LEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998754
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=2.1e-11 Score=106.79 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=135.0
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA 485 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 485 (634)
+..+|..+...|.+.|++++|++.|++..+ .+...+..+..+|...|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456677777777888888888888877652 345577888888888899999999988887764 3356677777788
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 563 (634)
+...++++.|...+.+.... .+.+...+..+..+|.+.|++++|++.|++. ...| +..++..++.+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988864 3345777888899999999999999999988 4444 678899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 036704 564 KRAAENILKIDPTNS 578 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~ 578 (634)
++.++++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999754
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=125.24 Aligned_cols=233 Identities=18% Similarity=0.152 Sum_probs=167.8
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-------C
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKT-------GLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-------P 439 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 439 (634)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...+++..+ +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3457888888999999999999999998864 3333566788888999999999999999987652 1
Q ss_pred ----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh--
Q 036704 440 ----DVVSWSSLIVGYAQFGCGEEALKLFRRMRSS------GVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY-- 506 (634)
Q Consensus 440 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 506 (634)
....+..+...|...|++++|...++++.+. +-.| ....+..+...+...|++++|...++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2346788888999999999999999998764 2223 25667888889999999999999999887531
Q ss_pred ---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 036704 507 ---GIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-A---------FDDD-------IVVWKSLLASCKTHGNVDVGKR 565 (634)
Q Consensus 507 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~~~-------~~~~~~l~~~~~~~g~~~~a~~ 565 (634)
+..| ...++..+..+|...|++++|.+.++++ . ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456778889999999999999999877 1 1111 1223333344455667777778
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 566 AAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 566 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+++.....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999998875
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=1.5e-11 Score=129.89 Aligned_cols=161 Identities=18% Similarity=0.175 Sum_probs=143.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHH
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCV 518 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 518 (634)
...|+.|...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|.+.|+++.+. .| +...+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 457888889999999999999999998886 45 4788889999999999999999999998854 45 57788899
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 519 VDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
..+|.+.|++++|++.|++. ...| +...+..++.+|...|++++|+..|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999988 5555 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 036704 597 VARLMGSMKE 606 (634)
Q Consensus 597 A~~~~~~~~~ 606 (634)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1e-11 Score=124.49 Aligned_cols=273 Identities=11% Similarity=0.005 Sum_probs=204.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-H----hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhH
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-G----LTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNA 350 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (634)
..+..+...+...|++++|...|+++.+.+ |+ . ..+..+...+...|+++.|...++...+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 115 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL----------- 115 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------
Confidence 345566778999999999999999988763 33 2 46777778888899999998887766542
Q ss_pred HHhcCHhHHHHHHHHHHHCCC-CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHhhcC
Q 036704 351 ILQHQAGELFRLFSLMLASQT-KPDHITFNDVMGACAAMASLEMGTQLHCYIMKT----GL-ALDVFVMNGLMDMYVKCG 424 (634)
Q Consensus 351 ll~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g 424 (634)
.+. .+. +.....+..+...+...|++++|...+.++.+. +- +....++..+...|...|
T Consensus 116 ------------~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 116 ------------AKS---MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHH---ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 111 111 123356777888889999999999999888744 21 123456778888899999
Q ss_pred C-----------------hHHHHHHHhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC--
Q 036704 425 S-----------------LGSARELFNFMED-----P----DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PN-- 475 (634)
Q Consensus 425 ~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~-- 475 (634)
+ +++|...+++..+ . ....+..+...|...|++++|...+++..+.... ++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 9 8999888877542 1 1236778888999999999999999998764211 12
Q ss_pred --HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC
Q 036704 476 --HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM-------AFDD 542 (634)
Q Consensus 476 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~ 542 (634)
..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|.+.+++. +..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 237788889999999999999999988754221111 456778899999999999999999987 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 543 -DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 543 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
...++..+...|...|++++|...++++++..+.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2457888999999999999999999999987763
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=2e-10 Score=109.74 Aligned_cols=217 Identities=8% Similarity=0.045 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc-------cccH-------HHHHHHHHHHHHh-CCCCchhHHHHHHHHHh
Q 036704 357 GELFRLFSLMLASQTKPDHITFNDVMGACAA-------MASL-------EMGTQLHCYIMKT-GLALDVFVMNGLMDMYV 421 (634)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 421 (634)
++|...|++..... +-+...|..+...+.. .|++ ++|..++++.++. .+ -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 45555665555532 3334444444444432 2443 5555555555542 22 13445555555555
Q ss_pred hcCChHHHHHHHhcCCC--CC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-ccCCHHHHH
Q 036704 422 KCGSLGSARELFNFMED--PD-VV-SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACS-HVGLVEEGL 496 (634)
Q Consensus 422 ~~g~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~ 496 (634)
+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555442 22 22 45555555555555555555555555542 122333332222211 245555555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036704 497 QLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A---FDD--DIVVWKSLLASCKTHGNVDVGKRAAENI 570 (634)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 570 (634)
++|++..+.. +.+...+..++..+.+.|++++|..+|++. . ..| ....|..++..+...|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555431 123445555555555555555555555555 1 132 2345555555555555555555555555
Q ss_pred HhcCCCCc
Q 036704 571 LKIDPTNS 578 (634)
Q Consensus 571 ~~~~p~~~ 578 (634)
++..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 55555533
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=2e-11 Score=118.36 Aligned_cols=272 Identities=12% Similarity=0.020 Sum_probs=200.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-----HhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHH
Q 036704 277 SWNTIIAGVASCSNANEAMSLFSEMGDRELIPD-----GLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAI 351 (634)
Q Consensus 277 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 351 (634)
.+......+...|++++|...|+++.+.. |+ ...+..+...+...|+++.|.+.+....+.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------ 72 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------ 72 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 44556778899999999999999988753 33 356777788888999999998887766542
Q ss_pred HhcCHhHHHHHHHHHHHCCCC-CCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHhhcCC
Q 036704 352 LQHQAGELFRLFSLMLASQTK-PDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLA-LD----VFVMNGLMDMYVKCGS 425 (634)
Q Consensus 352 l~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~ 425 (634)
.... +.. ....++..+...+...|++++|...+.+..+.... ++ ..++..+...+...|+
T Consensus 73 -----------~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 73 -----------ARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp -----------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhcc---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 1111 111 12356777888889999999999999888743211 11 3467778888889999
Q ss_pred --------------------hHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC
Q 036704 426 --------------------LGSARELFNFMED-----PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV-RPN 475 (634)
Q Consensus 426 --------------------~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~ 475 (634)
+++|...+++..+ ++ ...+..+...+...|++++|...+++..+... .++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 8888888876542 22 23677788889999999999999998765311 112
Q ss_pred ----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC
Q 036704 476 ----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AFDDD 543 (634)
Q Consensus 476 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~ 543 (634)
..++..+...+...|++++|...+++......-.++ ..++..+...+...|++++|.+.+++. +..++
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 347788888999999999999999988754221222 456778889999999999999999887 11112
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 544 ----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 544 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
..++..+...|...|++++|...++++++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 457888999999999999999999999987664
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=2.6e-10 Score=108.94 Aligned_cols=211 Identities=5% Similarity=-0.069 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHh-------hcCCh-------HHHHHHHhcCCC---C-ChhhHHHHHHHHHhcC
Q 036704 394 GTQLHCYIMKTGLALDVFVMNGLMDMYV-------KCGSL-------GSARELFNFMED---P-DVVSWSSLIVGYAQFG 455 (634)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~ 455 (634)
|..+|+++++..+. ++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+.|
T Consensus 35 a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~ 113 (308)
T 2ond_A 35 VMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 45566666655433 6677777776665 35776 899999997653 3 3457888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPN-HV-TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA-RAGRVHEAE 532 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 532 (634)
++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++|.
T Consensus 114 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 114 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp CHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999985 454 43 7888888889999999999999999853 2234445544433322 369999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 533 DFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKI---DPT-NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 533 ~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++|++. ... .+...|..++..+...|++++|..+|+++++. .|+ +..+|..++..+.+.|+.++|..+++++.+
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988 223 36788899999999999999999999999985 443 677888899999999999999999999887
Q ss_pred CCC
Q 036704 607 RGV 609 (634)
Q Consensus 607 ~g~ 609 (634)
...
T Consensus 270 ~~p 272 (308)
T 2ond_A 270 AFR 272 (308)
T ss_dssp HTT
T ss_pred Hcc
Confidence 543
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=1e-10 Score=106.46 Aligned_cols=164 Identities=8% Similarity=-0.002 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVD 520 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 520 (634)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|.+.+++..+ ..| +...+..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 334444444444555555555555544443223444444444444455555555555554442 122 2334444445
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHH
Q 036704 521 LLARAGRVHEAEDFINQM-AFDD-DI-------VVWKSLLASCKTHGNVDVGKRAAENILKIDPT--NSAALVLLCNIYA 589 (634)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~-~~~~-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 589 (634)
+|...|++++|++.+++. ...| +. ..+..+...+...|++++|++.++++++.+|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555555444 2122 22 23444444455555555555555555555555 5555555555555
Q ss_pred hcCCh---------------------------HHHHHHHHHHHhCC
Q 036704 590 SSGKW---------------------------EEVARLMGSMKERG 608 (634)
Q Consensus 590 ~~g~~---------------------------~~A~~~~~~~~~~g 608 (634)
..|+. ++|+..+++..+..
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 55544 99999999998743
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=6.4e-11 Score=120.34 Aligned_cols=178 Identities=9% Similarity=-0.069 Sum_probs=156.7
Q ss_pred hHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 036704 426 LGSARELFNFME---DPDVVSWSSLIVGYAQFGCG-EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRI 501 (634)
Q Consensus 426 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 501 (634)
++++...++... ..+...+..+...+...|++ ++|+..|++..+.. +-+...+..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555666665543 24667888899999999999 99999999999874 23588999999999999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHHH
Q 036704 502 MQNEYGIIPTRERRSCVVDLLARA---------GRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH--------GNVDV 562 (634)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~--------g~~~~ 562 (634)
+. ...|+...+..+..+|... |++++|++.+++. ...| +...|..+..+|... |++++
T Consensus 163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98 4568888899999999999 9999999999998 4444 688999999999998 99999
Q ss_pred HHHHHHHHHhcCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 563 GKRAAENILKIDP---TNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 563 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
|+..|+++++.+| .++.++..++.+|...|++++|.+.++++.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999999874
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=3.5e-10 Score=98.80 Aligned_cols=169 Identities=17% Similarity=0.066 Sum_probs=144.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
...+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778888999999999999998874 456678888999999999999999999998873 34678888899999
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 036704 487 SHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~ 564 (634)
...|++++|.+.++++... .+.+...+..+...+...|++++|.+.++++ . .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999864 3446778888999999999999999999988 3 2346789999999999999999999
Q ss_pred HHHHHHHhcCCCCchhH
Q 036704 565 RAAENILKIDPTNSAAL 581 (634)
Q Consensus 565 ~~~~~~~~~~p~~~~~~ 581 (634)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999888876543
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=1.5e-10 Score=114.52 Aligned_cols=200 Identities=8% Similarity=-0.041 Sum_probs=157.9
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CCh--
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL------DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PDV-- 441 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-- 441 (634)
..++..+...+...|+++.|...+.+..+..... ...+++.+...|...|++++|...+++..+ ++.
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 3567888889999999999999999988542111 235678888999999999999999987752 222
Q ss_pred --hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC---CCCC
Q 036704 442 --VSWSSLIVGYAQFGCGEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG---IIPT 511 (634)
Q Consensus 442 --~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~ 511 (634)
.++..+...|...|++++|...+++..+. +..| ...++..+...+...|++++|...+++...... .+..
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 36888999999999999999999998772 2223 367788999999999999999999998775421 1112
Q ss_pred hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 512 RERRSCVVDLLARAGR---VHEAEDFINQMAFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
...+..+...|...|+ +++|+.++++.+..|+ ...+..+...|...|++++|...++++++..
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2335678888899999 9999999999865553 4477789999999999999999999988743
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=2.8e-10 Score=103.44 Aligned_cols=206 Identities=8% Similarity=0.040 Sum_probs=151.8
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--C-ChhhHHHHH
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--P-DVVSWSSLI 448 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 448 (634)
+.|+..+......+...|++++|...+++..+...+++...+..+..++...|++++|...++...+ | +...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4466788888888999999999999999999887656777777788888999999999999887753 3 345778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC---hhHHHHH
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNH-------VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT---RERRSCV 518 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 518 (634)
..|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...++++. ...|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 88999999999999999888763 2234 456777777888889999999988887 34554 4566667
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 519 VDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
..+|...|+ ..++++ .. ..+...+.... ....+.+++|+..++++++..|+++.+...+..+.
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777765443 333333 11 12333333332 33456789999999999999999998888776654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=3.5e-09 Score=104.28 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=161.8
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHhhcCChHHHHHHHhcCCC-------C---C-
Q 036704 377 TFNDVMGACAAMASLEMGTQLHCYIMKTGLA-LD----VFVMNGLMDMYVKCGSLGSARELFNFMED-------P---D- 440 (634)
Q Consensus 377 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~---~- 440 (634)
.+..+...+...|+++.|...+.+....... .+ ..++..+...+...|++++|...+++..+ + .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 4556667778889999999988887743211 11 23356677788889999999888886642 1 1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHH
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR--P--NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRS 516 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 516 (634)
...+..+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++.............+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 234566777888999999999999887764322 1 234677778888899999999999998875422211111121
Q ss_pred -----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cch
Q 036704 517 -----CVVDLLARAGRVHEAEDFINQM-AFDDD-----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT------NSA 579 (634)
Q Consensus 517 -----~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 579 (634)
..+..+...|++++|...+++. ...|. ...+..+...+...|++++|...++++....+. ...
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 2334577899999999999988 22221 335667788888999999999999988774332 123
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++..++.++...|++++|...+++..+
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677788889999999999999888764
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=2.3e-10 Score=113.04 Aligned_cols=225 Identities=12% Similarity=-0.020 Sum_probs=167.7
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhCC--C---CchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC-----hhhHH
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKTGL--A---LDVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD-----VVSWS 445 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 445 (634)
....+...|++++|...++++.+... . ....++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999999875321 1 1245677888899999999999888877642 22 33677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh---CCCCChhHHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY---GIIPTRERRSC 517 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 517 (634)
.+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8888999999999999999887653 1111 13567788889999999999999999887521 22223567788
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 518 VVDLLARAGRVHEAEDFINQM----AF--DD-DIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~----~~--~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
+...|.+.|++++|.+.+++. .. .| ....+..+...+...|+ +++|+..+++. ...|.....+..++.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 899999999999999999987 11 22 23455666667777888 77888877762 2334455677889999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 036704 588 YASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~ 606 (634)
|.+.|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=6.5e-11 Score=113.42 Aligned_cols=201 Identities=14% Similarity=0.073 Sum_probs=132.4
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-------C--
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKT------GL-ALDVFVMNGLMDMYVKCGSLGSARELFNFMED-------P-- 439 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 439 (634)
..+..+...+...|++++|...++++.+. +. +.....+..+...|...|++++|...+++..+ +
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666667777778888888887777654 22 22355677778888888888888888876642 1
Q ss_pred --ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh----
Q 036704 440 --DVVSWSSLIVGYAQFGCGEEALKLFRRMRSS------GVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY---- 506 (634)
Q Consensus 440 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 506 (634)
....+..+...+...|++++|..+++++.+. +-.|+ ..++..+...+...|++++|...++++....
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1235777888899999999999999888764 21332 4567888889999999999999999887531
Q ss_pred --CCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 507 --GIIPTR-------ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 507 --~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
...+.. ..+..+...+...+.+.+|...++.. ...| ...++..++.+|...|++++|...+++++++.|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 111211 11222333444555666666677666 2333 466889999999999999999999999998776
Q ss_pred C
Q 036704 576 T 576 (634)
Q Consensus 576 ~ 576 (634)
.
T Consensus 310 ~ 310 (311)
T 3nf1_A 310 Q 310 (311)
T ss_dssp -
T ss_pred c
Confidence 4
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=5.4e-09 Score=103.12 Aligned_cols=197 Identities=10% Similarity=0.056 Sum_probs=153.0
Q ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHhCC-----CC-chhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----
Q 036704 376 ITFNDVMGACAAMASLEMGTQLHCYIMKTGL-----AL-DVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD---- 440 (634)
Q Consensus 376 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~---- 440 (634)
.++..+...+...|+++.|...+.+..+... .+ ...+++.+...|...|++++|...+++..+ ++
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4677788888899999999999988874311 11 245677888899999999999998887653 22
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC---h
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRS-----SGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT---R 512 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~ 512 (634)
..++..+..+|...|++++|...+++..+ .. +....++..+...+.+.|++++|...+++......-..+ .
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 23677888999999999999999999877 42 223677888999999999999999999998865322222 3
Q ss_pred hHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 513 ERRSCVVDLLARAGR---VHEAEDFINQMAFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
..+..+...+...++ +.+|+.++++.+..|+ ...+..++..|...|++++|...++++++.
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345666777778888 9999999998754443 346778899999999999999999998763
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=5.6e-10 Score=105.07 Aligned_cols=221 Identities=18% Similarity=0.178 Sum_probs=151.8
Q ss_pred hccccHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----------CChhhHHHH
Q 036704 386 AAMASLEMGTQLHCYIMKT-------GLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----------PDVVSWSSL 447 (634)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 447 (634)
...|+++.|...+++..+. ..+....++..+...|...|++++|...+++..+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666677766666532 2233466788889999999999999999887652 123467888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh----C-CCC-ChhH
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSS------GVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY----G-IIP-TRER 514 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~ 514 (634)
...|...|++++|...+++..+. .-.| ...++..+...+...|++++|...++++.... + ..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 1123 35678888889999999999999999887531 1 122 3556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----------CCCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM----------AFDD-DIVVWKSLLASCKTHG------NVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~-~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~p~~ 577 (634)
+..+..+|...|++++|.+.+++. ...+ ....+..+...+...+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 778889999999999999999876 1122 2223444443333322 2334444444444455667
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 578 SAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.++..++.+|.+.|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998875
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=2.9e-09 Score=100.65 Aligned_cols=194 Identities=9% Similarity=-0.065 Sum_probs=87.2
Q ss_pred HhhccccHHHHHHHHHHHHHh----CCCCc-hhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----hhhHHHHHH
Q 036704 384 ACAAMASLEMGTQLHCYIMKT----GLALD-VFVMNGLMDMYVKCGSLGSARELFNFMED-----PD----VVSWSSLIV 449 (634)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~ 449 (634)
.+...|++++|...+.+..+. |-+++ ..+++.+..+|.+.|++++|+..+++..+ .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666555432 11111 33455555555555555555555554431 11 124445555
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-----hHHHHH
Q 036704 450 GYAQF-GCGEEALKLFRRMRSSGVRP-N----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-----ERRSCV 518 (634)
Q Consensus 450 ~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l 518 (634)
.|... |++++|+..|++..+..... + ..++..+...+...|++++|...|+++.....-.+.. ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555554321000 0 2334455555555555555555555555321111111 023444
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 036704 519 VDLLARAGRVHEAEDFINQM-AFDDDI------VVWKSLLASCK--THGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~-~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
..++...|++++|...+++. ...|+. ..+..++.++. ..+++++|+..|+++...+|..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 45555555555555555554 323321 12223333332 2344555555555555544433
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=3e-09 Score=87.20 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=89.0
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM--AFDDDIVVWKSLLASCKT 556 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~ 556 (634)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++ ..+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555555666666666666666543 1224445555666666666666666666665 222356677777888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 557 HGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.|++++|...++++.+..|.++.++..++.++.+.|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888888888887764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=2e-09 Score=101.77 Aligned_cols=201 Identities=12% Similarity=0.028 Sum_probs=149.0
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHH
Q 036704 390 SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-----PD----VVSWSSLIVGYAQFGCGEEA 460 (634)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 460 (634)
++++|...+.++ ...|...|++++|...|.+..+ .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 588888887776 3467788999999998887642 11 45788999999999999999
Q ss_pred HHHHHHHHhCCCC-CC----HHHHHHHHHHhccc-CCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHH
Q 036704 461 LKLFRRMRSSGVR-PN----HVTLVGVLTACSHV-GLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHE 530 (634)
Q Consensus 461 ~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 530 (634)
+..+++..+.... .+ ..++..+...|... |++++|...|++......-..+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999998754211 11 45788888999996 9999999999998864221111 3567888999999999999
Q ss_pred HHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcCCh
Q 036704 531 AEDFINQM-AFDD---DI-----VVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAA-----LVLLCNIYA--SSGKW 594 (634)
Q Consensus 531 A~~~~~~~-~~~~---~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 594 (634)
|++.+++. ...| .. ..+..++.++...|++++|+..+++++++.|..... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 2222 21 257788888999999999999999999999985543 445566664 45678
Q ss_pred HHHHHHHHHHH
Q 036704 595 EEVARLMGSMK 605 (634)
Q Consensus 595 ~~A~~~~~~~~ 605 (634)
++|+..++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 89988887654
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=1e-08 Score=92.73 Aligned_cols=181 Identities=12% Similarity=-0.010 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC--CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHH
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED--PDV----VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNH----VTL 479 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~ 479 (634)
...+..+...+.+.|++++|...|+.+.+ |+. ..+..+..+|.+.|++++|+..|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 33444455566666777777777776652 322 345556666777777777777777766652 321 133
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H------------
Q 036704 480 VGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDI-V------------ 545 (634)
Q Consensus 480 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~------------ 545 (634)
..+..++...+.. .+ ..+..+...+...|++++|...|+++ ...|+. .
T Consensus 82 ~~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 3333333321100 00 00000111111234444444444444 222211 1
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 546 -----VWKSLLASCKTHGNVDVGKRAAENILKIDPTNS---AALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 546 -----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
....++..|...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113456778899999999999999999999876 57899999999999999999999999876543
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=1.7e-10 Score=96.72 Aligned_cols=142 Identities=8% Similarity=-0.066 Sum_probs=107.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG 526 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 526 (634)
...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|.+.|+++.+. -+-+...+..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34455667788888888877654 333 455667778888888888888888888753 2235677888888888888
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 527 RVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRA-AENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 527 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
++++|+..|++. ...| +...+..+...|...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888887 4455 577888888888889988766554 588999999999999888888888775
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1.3e-08 Score=94.01 Aligned_cols=174 Identities=10% Similarity=-0.014 Sum_probs=111.8
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 036704 429 ARELFNFME---DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQN 504 (634)
Q Consensus 429 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 504 (634)
|...|++.. .++..++..+..++...|++++|++++.+.+..+..+ +...+...+..+.+.|+++.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555565544 2444455566777777788888888887776654322 355666777777788888888888887764
Q ss_pred HhCCCC-----ChhHHHHHHHH--HHh--cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 036704 505 EYGIIP-----TRERRSCVVDL--LAR--AGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKI- 573 (634)
Q Consensus 505 ~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 573 (634)
. .| +..+...|+.+ ... .+++++|..+|+++ ...|+..+-..+..++...|++++|.+.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 45 23444444444 222 33788888888877 33454233333333677778888888888776664
Q ss_pred ---------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 574 ---------DPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 574 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+|+++.++..++.+....|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47777777666666666676 777777777763
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.06 E-value=1.9e-08 Score=98.98 Aligned_cols=227 Identities=10% Similarity=-0.010 Sum_probs=167.8
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHhCCCCchh----HHHHHHHHHhhcCChHHHHHHHhcCCC-----CCh----hhHHH
Q 036704 380 DVMGACAAMASLEMGTQLHCYIMKTGLALDVF----VMNGLMDMYVKCGSLGSARELFNFMED-----PDV----VSWSS 446 (634)
Q Consensus 380 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~ 446 (634)
.....+...|++++|...+++........+.. .++.+...+...|++++|...+++... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455667899999999999988765433322 456677888899999999999987653 222 23566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC-CC--ChhHHH
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSS----GVR--PN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI-IP--TRERRS 516 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~ 516 (634)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++......- .+ ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 778899999999999999987653 222 32 345667788889999999999999998764211 11 234567
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----hhHHH
Q 036704 517 CVVDLLARAGRVHEAEDFINQM----AFDDDIVVWK-----SLLASCKTHGNVDVGKRAAENILKIDPTNS----AALVL 583 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~ 583 (634)
.+...+...|++++|...+++. ........+. ..+..+...|++++|...++++....|.+. ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7888999999999999999886 2112211222 233447789999999999999988766532 24678
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 036704 584 LCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++.++...|++++|...++++.+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=4.9e-09 Score=97.39 Aligned_cols=180 Identities=10% Similarity=0.015 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHH
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFMED--PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV-RPN-HVTLVG 481 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~ 481 (634)
...+-.+...+.+.|++++|...|+.+.+ |+ ...+..+..+|...|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444444455555555555555555442 22 23444455555555555555555555554421 111 233444
Q ss_pred HHHHhcc--------cCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 036704 482 VLTACSH--------VGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLA 552 (634)
Q Consensus 482 l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 552 (634)
+..++.. .|++++|...|+++... .|+ ......+.......+.. ...+..++.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4444444 55555555555555543 121 11111111000000000 011366788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNS---AALVLLCNIYASS----------GKWEEVARLMGSMKER 607 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 607 (634)
.|...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999854 5888999999877 8999999999999874
No 92
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.04 E-value=1.4e-09 Score=114.93 Aligned_cols=162 Identities=15% Similarity=0.089 Sum_probs=120.6
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP-NHVTLVGVLT 484 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~ 484 (634)
+...++.+...|.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..|++..+. .| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345566666777777777777777766542 33556777777788888888888888887776 34 4677888888
Q ss_pred HhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 036704 485 ACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVD 561 (634)
Q Consensus 485 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 561 (634)
++...|++++|.+.|+++.+. .| +...+..+..+|.+.|++++|++.|++. ...| +...+..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888753 34 4667788888888888888888888887 4455 5678888888888888888
Q ss_pred HHHHHHHHHHhcCC
Q 036704 562 VGKRAAENILKIDP 575 (634)
Q Consensus 562 ~a~~~~~~~~~~~p 575 (634)
+|.+.++++++..|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 88888888776443
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=6.2e-09 Score=96.70 Aligned_cols=204 Identities=11% Similarity=-0.017 Sum_probs=147.6
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CC----hhh
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL--DVFVMNGLMDMYVKCGSLGSARELFNFMED--PD----VVS 443 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 443 (634)
+.+...+-.....+...|++++|...|+++.+..+.. ....+..+..+|.+.|++++|...|+...+ |+ ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4456777788889999999999999999999876442 166788889999999999999999998863 32 235
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhH
Q 036704 444 WSSLIVGYAQ--------FGCGEEALKLFRRMRSSGVRPNH-VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRER 514 (634)
Q Consensus 444 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 514 (634)
+..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 6777888888 99999999999999987 3442 222111 111111111 0112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCch
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD----DIVVWKSLLASCKTH----------GNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
+..+...|.+.|++++|+..|+++ ...| ....+..++.+|... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456778888999999999999887 2223 345777888888766 8999999999999999999864
Q ss_pred ---hHHHHHHHHHhcCChHH
Q 036704 580 ---ALVLLCNIYASSGKWEE 596 (634)
Q Consensus 580 ---~~~~l~~~~~~~g~~~~ 596 (634)
+...+..++.+.+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555554444
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=3.1e-08 Score=88.42 Aligned_cols=162 Identities=10% Similarity=-0.003 Sum_probs=134.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC----CHHHHHHHHHHHHHHhCCCCChhH
Q 036704 439 PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG----LVEEGLQLYRIMQNEYGIIPTRER 514 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~ 514 (634)
.++..+..|...|...+++++|+.+|++..+.| ++..+..+...|.. + ++++|.+.|++..+. + +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHH
Confidence 566677778888888899999999999988876 56777777777877 6 899999999998753 3 5667
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 515 RSCVVDLLAR----AGRVHEAEDFINQM-AFDDD---IVVWKSLLASCKT----HGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 515 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
+..|...|.. .+++++|+++|++. ...|+ +..+..+...|.. .+++++|+..++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888877 88999999999998 43443 7889999999988 88999999999999988 66788999
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 036704 583 LLCNIYASS-G-----KWEEVARLMGSMKERGV 609 (634)
Q Consensus 583 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 609 (634)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999865 3 89999999999988775
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=6.1e-09 Score=98.04 Aligned_cols=173 Identities=12% Similarity=0.004 Sum_probs=135.9
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCC
Q 036704 430 RELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGII 509 (634)
Q Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 509 (634)
...+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 333333333344566677778888999999999999988873 225777888888999999999999999988743 4
Q ss_pred CChhHHHH-HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhHHHH
Q 036704 510 PTRERRSC-VVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN--SAALVLL 584 (634)
Q Consensus 510 ~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l 584 (634)
|+...... ....+...++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ..++..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 55443332 233466778888899888887 3344 68899999999999999999999999999999987 8899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 036704 585 CNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.+|...|+.++|...+++...
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999887654
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=1.6e-08 Score=82.77 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777888889999999999999988764 335777888888889999999999999998864 234566778888999
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 523 ARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++..|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999987 3 23467788889999999999999999999999988853
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=6.2e-09 Score=97.81 Aligned_cols=216 Identities=12% Similarity=0.032 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHhhcCChHHHH
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKT------GLA-LDVFVMNGLMDMYVKCGSLGSAR 430 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~g~~~~A~ 430 (634)
+|++++.+......+....++..+...+...|++++|...++++.+. +-. ....++..+...|...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 34455555543332334567888999999999999999999998855 222 24567888999999999999999
Q ss_pred HHHhcCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHhcccCCH
Q 036704 431 ELFNFMED-------P----DVVSWSSLIVGYAQFGCGEEALKLFRRMRSS------GVRP-NHVTLVGVLTACSHVGLV 492 (634)
Q Consensus 431 ~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~ 492 (634)
..+++..+ + ....+..+...|...|++++|..+++++.+. +-.| ...++..+...+...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 99987752 2 1346788889999999999999999998765 1123 256788889999999999
Q ss_pred HHHHHHHHHHHHHh------CCCC-ChhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 036704 493 EEGLQLYRIMQNEY------GIIP-TRERRSCVVDLLARAG------RVHEAEDFINQMA-FDD-DIVVWKSLLASCKTH 557 (634)
Q Consensus 493 ~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 557 (634)
++|...++++.+.. ...+ ....+..+...+...+ .+.++...++... ..| ...++..++..|...
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 265 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ 265 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999887531 1122 2333433444443333 3444444555543 223 355788899999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 036704 558 GNVDVGKRAAENILKI 573 (634)
Q Consensus 558 g~~~~a~~~~~~~~~~ 573 (634)
|++++|...++++++.
T Consensus 266 g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 266 GKLEAAHTLEDCASRN 281 (283)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998864
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=2.9e-09 Score=113.18 Aligned_cols=168 Identities=10% Similarity=0.004 Sum_probs=107.5
Q ss_pred hhcCChHHHHHHHhcCC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 036704 421 VKCGSLGSARELFNFME-----------DPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV 489 (634)
Q Consensus 421 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 489 (634)
...|++++|.+.+++.. ..+...+..+...+...|++++|+..++++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 55566666666666543 1334456666666777777777777777766653 22456666666667777
Q ss_pred CCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
|++++|.+.|+++.+. .| +...+..+..+|.+.|++++ ++.|++. ...| +...+..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776643 23 45566666777777777777 7777666 3333 456677777777777777777777
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 567 AENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
|+++++.+|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777655444
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=3.1e-08 Score=91.49 Aligned_cols=182 Identities=10% Similarity=0.036 Sum_probs=135.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 394 GTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP-----DVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
+...+++..+.+ .++...+..+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 345555567788889999999999999887432 44567778889999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHH--hcccC--CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 469 SSGVRP-----NHVTLVGVLTA--CSHVG--LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 469 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
+. .| +..+...++.+ ....| ++++|..+|+++... .|+......++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 56 35666666655 33334 899999999998743 455333344555889999999999999875
Q ss_pred CC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 539 AF-----------DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 539 ~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.. +.++.++-.++......|+ +|.++++++.+..|+++.+...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 21 3366777677777777787 8899999999999999865543
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=4.4e-09 Score=90.96 Aligned_cols=157 Identities=13% Similarity=0.080 Sum_probs=99.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHh
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL-LAR 524 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 524 (634)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++... .|+......+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 34444555555555555555554431 113445555555555556666666555555432 2222222211111 112
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChHHHHHH
Q 036704 525 AGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN--SAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
.+...+|++.+++. ...| +...+..+...+...|++++|+..++++++.+|.. +.++..++.++...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 22233466667666 3345 57888899999999999999999999999999875 56899999999999999999999
Q ss_pred HHHHHh
Q 036704 601 MGSMKE 606 (634)
Q Consensus 601 ~~~~~~ 606 (634)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=1.4e-08 Score=106.13 Aligned_cols=160 Identities=11% Similarity=-0.014 Sum_probs=123.1
Q ss_pred cCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 423 CGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 423 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
.|++++|.+.+++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998764 346678889999999999999999999999874 335788888999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 036704 500 RIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH---GNVDVGKRAAENILKID 574 (634)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 574 (634)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 2335778888999999999999999999988 3334 677888999999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 036704 575 PTNSAALVLLC 585 (634)
Q Consensus 575 p~~~~~~~~l~ 585 (634)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=1.7e-09 Score=90.63 Aligned_cols=123 Identities=11% Similarity=0.049 Sum_probs=102.5
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPT-RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG 558 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 558 (634)
|...+...|++++|+..++... ...|+ ...+-.+...|.+.|++++|++.|++. ...| +..+|..+..+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3455677889999999988876 33443 445667889999999999999999998 5555 6889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 036704 559 NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARL-MGSMKER 607 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 607 (634)
++++|+..|+++++.+|+++.++..++.+|.+.|++++|.+. ++++.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999876665 5877663
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=1.3e-08 Score=84.62 Aligned_cols=97 Identities=9% Similarity=0.025 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+.+.|++++|++.|++. ...| ++..|..+..+|...|++++|+..|+++++.+|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 445667778888889999999999888 4444 68889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 036704 590 SSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~g 608 (634)
+.|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988743
No 104
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=2.5e-07 Score=87.40 Aligned_cols=161 Identities=9% Similarity=-0.040 Sum_probs=123.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSSGV-RPNH----VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRS 516 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 516 (634)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887531 2221 12334666777888999999999999863122223 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhH
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-----AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN------SAAL 581 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 581 (634)
.+...|...|++++|.+.++++ ..+.+ ..++..++..|...|++++|+..++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999887 11112 3478899999999999999999999999855432 6789
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 036704 582 VLLCNIYASSGK-WEEVARLMGSMKE 606 (634)
Q Consensus 582 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 606 (634)
..++.+|.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=9.4e-08 Score=90.99 Aligned_cols=217 Identities=11% Similarity=0.049 Sum_probs=149.2
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc-cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAA-MASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
++++|.+++++..+... .. +.+ .++++.|...+..+ ...|...|++++|...|
T Consensus 6 ~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 56677777766554211 10 111 35666666665543 45677788888888887
Q ss_pred hcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHhcccCCHHHHHHHH
Q 036704 434 NFMED-----PD----VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGV---RPN--HVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 434 ~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
.+..+ .+ ..+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|...|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 76542 11 33678888889999999999999988764311 122 4567788888888 9999999999
Q ss_pred HHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 036704 500 RIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM-A---FDDD----IVVWKSLLASCKTHGNVDVGKRAA 567 (634)
Q Consensus 500 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 567 (634)
++......-..+ ..++..+...|.+.|++++|++.|++. . ..++ ...+..++.++...|++++|...+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988754211111 456778899999999999999999987 1 1122 236667777788889999999999
Q ss_pred HHHHhcCCCCchh-----HHHHHHHHHhcCChHHHHHH
Q 036704 568 ENILKIDPTNSAA-----LVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 568 ~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 600 (634)
++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999 88875432 44455545 56777666553
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=5.3e-08 Score=86.69 Aligned_cols=179 Identities=7% Similarity=-0.021 Sum_probs=118.2
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 036704 379 NDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGE 458 (634)
Q Consensus 379 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 458 (634)
......+...|++++|...+++..+..+. +...+... ...... .........+..+|...|+++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~~----------~~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKNS----------EISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTTS----------HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcchh----------hhhHHHHHHHHHHHHHCCCHH
Confidence 33444556677777777777777665422 11111110 000000 011122344788899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCC--hHHHHHHH
Q 036704 459 EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGR--VHEAEDFI 535 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~ 535 (634)
+|+..|++..+.. +-+...+..+...+...|++++|...|+++.+. .| +...+..+..+|...|+ .+.+...+
T Consensus 72 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 72 KAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999998874 235788888999999999999999999999864 44 56777788887766553 44556666
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 536 NQMA-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 536 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
+... ..|....+.....++...|++++|+..|+++++..|++
T Consensus 148 ~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 148 KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp C---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6653 22233345556777778899999999999999999963
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=9.4e-08 Score=85.47 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=81.5
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHG 558 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 558 (634)
.+...+...|++++|...+++. +.|+...+..+..+|.+.|++++|++.+++. .. +.+...+..++.++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444555566666666665544 2345556666666666666666666666665 22 235566777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 559 NVDVGKRAAENILKIDPTNS----------------AALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++++|+..++++++..|.+. .++..++.+|.+.|++++|.+.++++.+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777777777776666 777777777788888888887777776543
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=4.4e-08 Score=78.93 Aligned_cols=92 Identities=9% Similarity=0.110 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+......|.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++.+|+++.+|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 344455555555666665555554 2222 45555555666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHh
Q 036704 593 KWEEVARLMGSMKE 606 (634)
Q Consensus 593 ~~~~A~~~~~~~~~ 606 (634)
++++|.+.+++..+
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=4.4e-08 Score=78.93 Aligned_cols=113 Identities=17% Similarity=0.053 Sum_probs=94.0
Q ss_pred CCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036704 473 RPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKS 549 (634)
Q Consensus 473 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 549 (634)
.|+ ...+......+.+.|++++|++.|++..+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...|..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 444 355666777888889999999999988854 2346778888889999999999999999887 4444 6789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
++.++...|++++|++.|+++++++|+++.++..+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999998888764
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=1.6e-08 Score=84.31 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445556666666666666666665 2223 56666666666777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHh
Q 036704 590 SSGKWEEVARLMGSMKE 606 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~~~ 606 (634)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777766655
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=1.5e-07 Score=88.93 Aligned_cols=163 Identities=7% Similarity=-0.091 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC--CCC--hh
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI--IPT--RE 513 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~ 513 (634)
.+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++......- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677788888888888887776532211 122334555667778888888888887743111 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM----AFDDD-----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPT------NS 578 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 578 (634)
+++.+...|...|++++|.+.+++. ...|+ ..++..++..|...|++++|+..++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888888899999998888876 11222 257888899999999999999999998875432 25
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 036704 579 AALVLLCNIYASSGKWEEV-ARLMGSMK 605 (634)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 605 (634)
.++..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788899999999999999 77777665
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=8.8e-08 Score=100.05 Aligned_cols=146 Identities=10% Similarity=-0.075 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFR 465 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 465 (634)
|++++|...++++.+.... +...+..+...+...|++++|.+.+++..+ .+...+..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444555555544443322 334444444555555555555555544332 223344444455555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 036704 466 RMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA---GRVHEAEDFINQM 538 (634)
Q Consensus 466 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 538 (634)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 544432 112444444445555555555555555554432 112233444444455444 5555555555444
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=7.9e-07 Score=83.11 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=159.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC--ChHHHHHHHhcCCC---CChhhHHHHHHHH----Hhc---CC
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG--SLGSARELFNFMED---PDVVSWSSLIVGY----AQF---GC 456 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 456 (634)
...++|....+.++..++. +...|+.--..+...| +++++++.++.+.. .+...|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3446788888888887755 5556676667777777 88999998888763 3344565544444 444 78
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHH--HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC------h
Q 036704 457 GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVE--EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR------V 528 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 528 (634)
+++++.+++++.+.. +-|..+|..-...+.+.|.++ ++.+.++++.+. -.-+...|+.-..++.+.|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 899999999998874 336777776666667777777 888999988864 23466667666666666666 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 036704 529 HEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNV-DVGKRAAENILKID---PTNSAALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 529 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
+++++.++++ ...| |...|+.+...+.+.|+. +.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8888888877 3344 788898888888888874 44666777777765 8888999999999999999999999999
Q ss_pred HHHh
Q 036704 603 SMKE 606 (634)
Q Consensus 603 ~~~~ 606 (634)
++.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 114
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=1.4e-07 Score=100.17 Aligned_cols=189 Identities=9% Similarity=-0.032 Sum_probs=146.1
Q ss_pred hccccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhc
Q 036704 386 AAMASLEMGTQLHCYIM--------KTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQF 454 (634)
Q Consensus 386 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 454 (634)
...|++++|.+.++++. +.. +.+...+..+..++...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999988 433 23667888889999999999999999998873 4567888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036704 455 GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDF 534 (634)
Q Consensus 455 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 534 (634)
|++++|+..|++..+.. +-+...+..+..++...|++++ .+.|+++.+. -+.+...+..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999874 2257888889999999999999 9999999864 233567888899999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCch
Q 036704 535 INQM-AFDDD-IVVWKSLLASCKTHGN-----VDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 535 ~~~~-~~~~~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 579 (634)
|++. ...|+ ...+..+..++...++ .+...+..+......+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9998 66775 5677778888766554 23333444444444444444
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.77 E-value=1.2e-07 Score=80.73 Aligned_cols=128 Identities=12% Similarity=-0.007 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 036704 477 VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASC 554 (634)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 554 (634)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. .. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44566667777888888888888887754 2335667777888888888888888888877 33 33677888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNI--YASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 606 (634)
...|++++|...++++++..|.+..++..+..+ +.+.|++++|.+.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555544 8888999999999987653
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=8.8e-06 Score=82.38 Aligned_cols=202 Identities=8% Similarity=-0.018 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHH-HHHHhcC
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSA-RELFNFM 436 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 436 (634)
.+..+|++..... +.+...|...+.-+...|+++.|..++++.... +.+...+... +...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHHHHHHHHHH
Confidence 3445666655532 445667777777778889999999999999988 3344333322 221111111 1222211
Q ss_pred C--C----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-cCCHHHHHHHHHHHH
Q 036704 437 E--D----------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH-VGLVEEGLQLYRIMQ 503 (634)
Q Consensus 437 ~--~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~ 503 (634)
. + .....|...+....+.++.+.|..+|++. .. ..++...|...+..-.. .++++.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 1 0 11234666666666778889999999988 32 12244444332222222 336899999999888
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 504 NEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 504 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
+.++ .+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7632 234456667777788899999999999983 2567788888777788999988888888775
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=3.4e-07 Score=86.06 Aligned_cols=164 Identities=9% Similarity=-0.009 Sum_probs=109.6
Q ss_pred CCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChhhHHHH-H
Q 036704 372 KPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVVSWSSL-I 448 (634)
Q Consensus 372 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~ 448 (634)
+.+...+..+...+...|++++|...++++.+..+. +...+..+...+.+.|++++|...++++.. |+....... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 344456666777778888888888888888877654 566777778888888888888888888764 544322222 2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036704 449 VGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV 528 (634)
Q Consensus 449 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 528 (634)
..+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23556666777777777777663 23466777777777777888888887777775411111245566667777777777
Q ss_pred HHHHHHHHh
Q 036704 529 HEAEDFINQ 537 (634)
Q Consensus 529 ~~A~~~~~~ 537 (634)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 666666554
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.73 E-value=4.3e-07 Score=81.93 Aligned_cols=185 Identities=10% Similarity=-0.056 Sum_probs=125.6
Q ss_pred CHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCChHHHHHHHhcCCC--CChh----hHH
Q 036704 374 DHITFNDVMGACAAMASLEMGTQLHCYIMKTGLAL--DVFVMNGLMDMYVKCGSLGSARELFNFMED--PDVV----SWS 445 (634)
Q Consensus 374 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 445 (634)
+...+-.+...+...|++++|...|+++.+..+.. ....+..+..+|.+.|++++|...|+++.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667778899999999999999999875432 245777888999999999999999998763 4332 344
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHh
Q 036704 446 SLIVGYAQ------------------FGCGEEALKLFRRMRSSGVRPNH-VTLVGVLTACSHVGLVEEGLQLYRIMQNEY 506 (634)
Q Consensus 446 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 506 (634)
.+..++.. .|+.++|...|+++.+. .|+. ........ ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555544 34556666666666554 2332 11111000 000000000
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 036704 507 GIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA 579 (634)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 579 (634)
.....+...|.+.|++++|+..|+++ ...|+ ...+..++.++.+.|+.++|++.++.+....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01124567888999999999999988 33343 357888999999999999999999999998887643
No 119
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.73 E-value=1.9e-07 Score=83.02 Aligned_cols=157 Identities=8% Similarity=-0.003 Sum_probs=115.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHhcccCCHHHHHHHHHHHHHHhCCC
Q 036704 447 LIVGYAQFGCGEEALKLFRRMRSSGVRPN-HVTLVG----------------VLTACSHVGLVEEGLQLYRIMQNEYGII 509 (634)
Q Consensus 447 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 509 (634)
....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...|++..+. .+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence 344556667777777777776665 333 344444 888899999999999999999864 23
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 510 PTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGN--VDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
.+...+..+..+|...|++++|++.|++. ...| +...+..+...|...|+ .+.+...++++....| ....+...+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 36778889999999999999999999998 4445 67889999988866654 4556666666654333 223566678
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 036704 586 NIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.++...|++++|...|++..+..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888999999999999997643
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=5.3e-07 Score=80.37 Aligned_cols=172 Identities=10% Similarity=-0.074 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 036704 394 GTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-PDVVSWSSLIVGYAQFG----CGEEALKLFRRMR 468 (634)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 468 (634)
|...|++..+.| ++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 555666666666667777777777776543 445566666666666 5 7888888888887
Q ss_pred hCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHh
Q 036704 469 SSGVRPNHVTLVGVLTACSH----VGLVEEGLQLYRIMQNEYGIIPT---RERRSCVVDLLAR----AGRVHEAEDFINQ 537 (634)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 537 (634)
+.| ++..+..+...|.. .+++++|.+.|++..+ ..|+ ...+..|...|.. .+++++|.++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 765 56667777777776 7788888888888774 3342 5667778888877 7788999998888
Q ss_pred C-CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 036704 538 M-AFDDDIVVWKSLLASCKTH-G-----NVDVGKRAAENILKIDP 575 (634)
Q Consensus 538 ~-~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 575 (634)
. ...+++..+..+...|... | +.++|+..++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3335666777788777653 3 88999999988877654
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=2.6e-07 Score=74.14 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|.+.++++... .+.+...+..+...+.+.|++++|..+++++ . .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666777777778888888888777754 2335566777777888888888888888776 2 23366778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+...|++++|...++++++..|.++.++..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999988988888888887776554
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=2e-07 Score=75.85 Aligned_cols=116 Identities=9% Similarity=-0.021 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|...++++... .+.+...+..+..++...|++++|.+.+++. ... .+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 455666666666677777777777766632 2224556666666777777777777777666 222 356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
+...|++++|+..++++++..|.+..++..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888887776654
No 123
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=2e-07 Score=75.59 Aligned_cols=117 Identities=10% Similarity=-0.059 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|.+.+++. ...| +...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 455666777777888888888888887754 2335667777888888888888888888877 3333 57788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
+...|++++|...++++++..|.++.++..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998888875
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=2.7e-07 Score=79.58 Aligned_cols=154 Identities=11% Similarity=-0.032 Sum_probs=95.5
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hccc
Q 036704 414 NGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTA-CSHV 489 (634)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~ 489 (634)
......+...|++++|...|++..+ .+...+..+...+...|++++|...+++..... |++......... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 3445556666777777777776663 344566666777777777777777777765542 333322221111 1122
Q ss_pred CCHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD---IVVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~ 564 (634)
+....|...+++..+. .| +...+..+..++...|++++|.+.++++ ...|+ ...+..++..+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223456667776643 33 4666777777788888888888888776 44443 457777777888888888888
Q ss_pred HHHHHHHh
Q 036704 565 RAAENILK 572 (634)
Q Consensus 565 ~~~~~~~~ 572 (634)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777653
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=8e-08 Score=83.06 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=55.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcCCh--H
Q 036704 453 QFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL-LARAGRV--H 529 (634)
Q Consensus 453 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 529 (634)
..|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.... +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3444555555555554432 2234445555555555555555555555554321 1133344444444 4444554 5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 530 EAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 530 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
+|.+.+++. ...| +...+..+...+...|++++|...++++++..|.++
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 555555544 2222 344444455555555555555555555555555443
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=1.2e-05 Score=75.17 Aligned_cols=227 Identities=9% Similarity=0.007 Sum_probs=170.9
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----hhc---CC
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMA--SLEMGTQLHCYIMKTGLALDVFVMNGLMDMY----VKC---GS 425 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 425 (634)
..++|+++.+.++... +-+...++.--..+...+ ++++++..++.+....++ +..+|+.-...+ .+. ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3345666666665542 334456677777777777 999999999999988766 455555443333 444 78
Q ss_pred hHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC------HHH
Q 036704 426 LGSARELFNFMED---PDVVSWSSLIVGYAQFGCGE--EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL------VEE 494 (634)
Q Consensus 426 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 494 (634)
+++++.+++.+.+ .+...|+.-...+.+.|.++ ++++.++++.+.... |...|+.-...+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999998874 56667777777788888888 999999999988633 67777766666666665 889
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHE-AEDFINQM-AF----DDDIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
+++.++++... .+-|...|+.+...+.+.|+..+ +.++.+++ .. ..++..+..++.+|.+.|+.++|+++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999988864 34477888888888888888555 55677776 22 3478899999999999999999999999
Q ss_pred HHHh-cCCCCchhHHHHHH
Q 036704 569 NILK-IDPTNSAALVLLCN 586 (634)
Q Consensus 569 ~~~~-~~p~~~~~~~~l~~ 586 (634)
.+.+ .+|.....|...+.
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 9997 79998888877654
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=1.7e-07 Score=77.45 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|+++.++..++.+|...|+
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34445555555555555555555 2222 455555556666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHh
Q 036704 594 WEEVARLMGSMKE 606 (634)
Q Consensus 594 ~~~A~~~~~~~~~ 606 (634)
+++|.+.+++..+
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=1.2e-07 Score=90.36 Aligned_cols=196 Identities=8% Similarity=-0.038 Sum_probs=150.9
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh-cCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 036704 387 AMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVK-CGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFR 465 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 465 (634)
..|++++|.+++++..+.... + +.+ .++++.|...|+. ....|...|++++|...+.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 467889999999988765322 1 122 5788888887664 4667889999999999999
Q ss_pred HHHhCCC---CC--CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHH
Q 036704 466 RMRSSGV---RP--NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFIN 536 (634)
Q Consensus 466 ~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (634)
+..+... .+ -..+|..+...|...|++++|...+++....+.-..+ ..++..+..+|.. |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8765421 11 1457888889999999999999999987754211111 3567788889988 99999999999
Q ss_pred hC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCChHHHHHHHH
Q 036704 537 QM----AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS------AALVLLCNIYASSGKWEEVARLMG 602 (634)
Q Consensus 537 ~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 602 (634)
+. +...+ ..++..+...|...|++++|+..++++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87 11111 45788899999999999999999999999766543 366777888889999999999999
Q ss_pred HHH
Q 036704 603 SMK 605 (634)
Q Consensus 603 ~~~ 605 (634)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
No 129
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=1.5e-05 Score=80.59 Aligned_cols=202 Identities=10% Similarity=-0.018 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 391 LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED-PDVVSWSSLIVGYAQFGCGEEALKLFRRMRS 469 (634)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 469 (634)
.+.+..+|++++...+. +...|...+..+.+.|+.+.|..++++... |+...... .|....+.++. ++.+.+
T Consensus 195 ~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~---~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL---YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH---HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH---HHHhhcchhHH---HHHHHH
Confidence 45677889888876543 577888888888899999999999987643 33322211 23222221221 222222
Q ss_pred CC---------CCC---CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-CChHHHHHHHH
Q 036704 470 SG---------VRP---NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA-GRVHEAEDFIN 536 (634)
Q Consensus 470 ~~---------~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 536 (634)
.- ..+ ....|...+....+.++.+.|..+|+++ .. . ..+...|...+..-... ++.+.|.++|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 10 011 1245666666666788899999999998 32 1 23444554333333333 36999999999
Q ss_pred hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 537 QM--AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 537 ~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.. ..+.++..|...+......|+.+.|..+|+++ +.+...|...+..-...|+.+.+..++++..+
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 87 33234556677777778899999999999998 34667888888877788999999998887774
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2e-07 Score=75.24 Aligned_cols=94 Identities=7% Similarity=-0.002 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
.+..+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++.+|.++.++..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4555666667777777777777766 3233 5667777777777777777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHhC
Q 036704 592 GKWEEVARLMGSMKER 607 (634)
Q Consensus 592 g~~~~A~~~~~~~~~~ 607 (634)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 7777777777777653
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=1e-06 Score=78.62 Aligned_cols=145 Identities=10% Similarity=-0.008 Sum_probs=88.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCH
Q 036704 413 MNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLV 492 (634)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 492 (634)
+..+...+...|++++|...|+...+++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455566666777777777776666666666666666777777777777776666553 22455666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036704 493 EEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDD-DIVVWKSLLASCKTHGNVDVGKRAAENIL 571 (634)
Q Consensus 493 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 571 (634)
++|.+.++++.+. .|+..... +...| +...| ....+..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666666642 11110000 00000 01222 23567777778888888888888888888
Q ss_pred hcCCCC
Q 036704 572 KIDPTN 577 (634)
Q Consensus 572 ~~~p~~ 577 (634)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888765
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.66 E-value=1.9e-07 Score=89.88 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|+..|+++++..|.++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356778888899999999999999887 3344 68899999999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHH
Q 036704 590 SSGKWEEV-ARLMGSMK 605 (634)
Q Consensus 590 ~~g~~~~A-~~~~~~~~ 605 (634)
+.|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44556553
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.65 E-value=2.4e-07 Score=72.68 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=84.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT--NSAALVLLCN 586 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 586 (634)
+...+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|+..++++++..|. ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455667778888888888888888877 22 336778888999999999999999999999999999 9999999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCC
Q 036704 587 IYASS-GKWEEVARLMGSMKERGV 609 (634)
Q Consensus 587 ~~~~~-g~~~~A~~~~~~~~~~g~ 609 (634)
++.+. |++++|.+.++++.+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999987554
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=1.8e-07 Score=74.76 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++.+|+++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445677888999999999999988 4444 7889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 036704 592 GKWEEVARLMGSMKERG 608 (634)
Q Consensus 592 g~~~~A~~~~~~~~~~g 608 (634)
|++++|...++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=4.1e-06 Score=78.98 Aligned_cols=201 Identities=8% Similarity=-0.064 Sum_probs=138.4
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhH---HHHHHHHHhhcCChHHHHHHHhcCCC-
Q 036704 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFV---MNGLMDMYVKCGSLGSARELFNFMED- 438 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~- 438 (634)
+.++......|+..++..+...+.-.-+ .+.......+... +...+..+...|++++|...++...+
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3444444456777777666665543321 1122222222222 23346778889999999999987653
Q ss_pred ----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 439 ----PDV----VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 439 ----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
++. ..+..+...+...+++++|+..+++..+.... ++ ..+++.+...|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111 12334666677788999999999999874322 22 236888999999999999999999998853
Q ss_pred hC----CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 036704 506 YG----IIP-TRERRSCVVDLLARAGRVHEAEDFINQM-------AFDDD-IVVWKSLLASCKTHGN-VDVGKRAAENIL 571 (634)
Q Consensus 506 ~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 571 (634)
.. ..+ ...++..+...|.+.|++++|.+.+++. +..+. ..++..++.+|...|+ +++|.+.+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 21 111 1346778899999999999999999877 22222 6789999999999995 699999999987
Q ss_pred h
Q 036704 572 K 572 (634)
Q Consensus 572 ~ 572 (634)
.
T Consensus 265 ~ 265 (293)
T 3u3w_A 265 F 265 (293)
T ss_dssp H
T ss_pred H
Confidence 6
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=1.2e-07 Score=88.68 Aligned_cols=192 Identities=9% Similarity=-0.021 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhcCC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 036704 410 VFVMNGLMDMYVKCGSLGSARELFNFME--DP-DVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTAC 486 (634)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 486 (634)
...+..+...+.+.|++++|...|+... .| +...|..+..+|...|++++|...+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4455556666667777777777776654 23 45567777777778888888888888877653 22466777777788
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036704 487 SHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRA 566 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 566 (634)
...|++++|...|+++.+...-.+. .+...+....+....... .........++......+... ..|++++|++.
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~ 157 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERERELEE 157 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence 8888888888888777653111110 111111111111111111 112222333344444444332 36889999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 036704 567 AENILKIDPTNSAALVLLCNIYASS-GKWEEVARLMGSMKER 607 (634)
Q Consensus 567 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 607 (634)
++++++.+|.+......+...+.+. +.+++|.++|+++.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999998888888887777766 7789999999988753
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=5.8e-07 Score=73.62 Aligned_cols=96 Identities=9% Similarity=0.018 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555556666666666666666655 2222 4556666666666666666666666666666666666666666666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 036704 589 ASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~ 606 (634)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666666654
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=5.8e-07 Score=74.62 Aligned_cols=104 Identities=10% Similarity=-0.008 Sum_probs=89.0
Q ss_pred CCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036704 473 RPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKS 549 (634)
Q Consensus 473 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 549 (634)
.|+ ...+..+...+.+.|++++|...|+++... -+.+...|..+..+|...|++++|++.|++. ...| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 343 556777888899999999999999999864 2336778889999999999999999999998 4444 5778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
+..+|...|++++|+..|+++++..|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999765
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.57 E-value=4.1e-07 Score=77.32 Aligned_cols=110 Identities=12% Similarity=0.001 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLA 552 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 552 (634)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4667888888999999999999999999864 2336778889999999999999999999988 4444 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+|...|++++|+..++++++..|++...+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999887665544
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=1.9e-07 Score=75.39 Aligned_cols=93 Identities=9% Similarity=0.066 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------hHHHH
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSA-------ALVLL 584 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 584 (634)
.+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|++.+++++++.|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556777788888888888888876 4344 5777888888888888888888888888887776543 56677
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 036704 585 CNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.++...|++++|++.+++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7788888888888888888765
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=3.2e-07 Score=76.34 Aligned_cols=117 Identities=7% Similarity=-0.107 Sum_probs=92.5
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036704 463 LFRRMRSSGVRP-NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AF 540 (634)
Q Consensus 463 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 540 (634)
.++++... .| +...+..+...+...|++++|...|+.+... -+.+...+..+..+|...|++++|++.|++. ..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444443 34 3556677778888999999999999998864 2336777888889999999999999999987 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 541 DD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 541 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.| ++..+..+..+|...|++++|+..|+++++..|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 34 67788899999999999999999999999999988765433
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=3.8e-06 Score=79.21 Aligned_cols=161 Identities=7% Similarity=-0.072 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcCCC--C-Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC--HH
Q 036704 412 VMNGLMDMYVKCGSLGSARELFNFMED--P-DV------VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVR---PN--HV 477 (634)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~ 477 (634)
.+...+..+...|++++|.+.++...+ + .. ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556777888899998888875431 1 11 12344556677888999999999998764221 22 45
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-----RERRSCVVDLLARAGRVHEAEDFINQM-------AFDD-DI 544 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~ 544 (634)
+++.+...|...|++++|...++++.......|+ ..++..+...|.+.|++++|.+.+++. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999988732211222 257788899999999999999999886 1111 26
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 036704 545 VVWKSLLASCKTHGNVDVG-KRAAENILK 572 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 572 (634)
.++..++.+|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6888999999999999999 787888775
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=9.2e-07 Score=69.96 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AFD-DDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSG 592 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 592 (634)
+..+...+...|++++|.+.+++. ... .+...+..++..+...|++++|...++++++..|.++.++..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 334444444555555555555544 111 234455555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHh
Q 036704 593 KWEEVARLMGSMKE 606 (634)
Q Consensus 593 ~~~~A~~~~~~~~~ 606 (634)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=8.5e-07 Score=72.04 Aligned_cols=98 Identities=7% Similarity=0.033 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|+..++++++..|.++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567788889999999999999999998 5455 7889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 036704 589 ASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~g 608 (634)
.+.|++++|.+.+++..+..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999988753
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=7.6e-07 Score=78.44 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYAS 590 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 590 (634)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..++++++..|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56677888888899999999988887 3333 678899999999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 036704 591 SGKWEEVA-RLMGSMKERG 608 (634)
Q Consensus 591 ~g~~~~A~-~~~~~~~~~g 608 (634)
.|+.+++. ..++.+...|
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 98888877 5566665444
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=5.3e-07 Score=82.19 Aligned_cols=191 Identities=10% Similarity=-0.047 Sum_probs=114.6
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHH-------HHHHhhcCChHHHHHHHhcCCCCCh------------------
Q 036704 387 AMASLEMGTQLHCYIMKTGLALDVFVMNGL-------MDMYVKCGSLGSARELFNFMEDPDV------------------ 441 (634)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 441 (634)
..++...|.+.|.++....+. ....|..+ ...+.+.++..+++..+..-.+..+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578888888888888887755 45556555 3444444444444444443332000
Q ss_pred ------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC---h
Q 036704 442 ------VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT---R 512 (634)
Q Consensus 442 ------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~ 512 (634)
..+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.... ..++ .
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHH
Confidence 112334556677777777777777766543 4433444455566677777777777764432 1111 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC--CCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM--AFD-DD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
..+..+..++...|++++|++.|++. +.. |. ...+.....++.+.|+.++|...|+++...+|. +.+...|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 24556667777777777777777776 111 32 335666666777777777777777777777776 5544444
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=2.5e-06 Score=75.30 Aligned_cols=153 Identities=10% Similarity=-0.035 Sum_probs=83.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC---CCC-ChhHHHHHHHHHHhcCCh
Q 036704 453 QFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG---IIP-TRERRSCVVDLLARAGRV 528 (634)
Q Consensus 453 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~ 528 (634)
..|++++|.+.++.+... ......++..+...+...|++++|...+++...... ..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 112344555555556666666666666665544211 111 233455556666666666
Q ss_pred HHHHHHHHhC----CCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----chhHHHHHHHHHhcCC
Q 036704 529 HEAEDFINQM----AFDD-D----IVVWKSLLASCKTHGNVDVGKRAAENILKIDP--TN----SAALVLLCNIYASSGK 593 (634)
Q Consensus 529 ~~A~~~~~~~----~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~ 593 (634)
++|.+.+++. ...+ + ...+..+...+...|++++|...++++++..+ .+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666654 1111 2 23566666777777777777777777765321 11 2235667777777777
Q ss_pred hHHHHHHHHHHHh
Q 036704 594 WEEVARLMGSMKE 606 (634)
Q Consensus 594 ~~~A~~~~~~~~~ 606 (634)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=1.8e-06 Score=68.29 Aligned_cols=111 Identities=17% Similarity=0.010 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. ...| +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 445566667777778888888888877753 2335666777777888888888888888776 3333 57788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...|++++|...++++++..|.++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999988888776653
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=1.3e-06 Score=69.94 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+...|++++|.+.++++ . .+.+..++..++..+...|++++|...++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 466778889999999999999999998 3 33467889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 036704 590 SSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~g 608 (634)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988753
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.6e-06 Score=71.98 Aligned_cols=109 Identities=16% Similarity=0.070 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKS 549 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 549 (634)
...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|++.+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4445555555556666666666666555 23343 344455555555555555555555554 2222 3445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 550 LLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
+..++...|++++|...++++++..|.+..++..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555555555555555555555555555555544443
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=2.1e-06 Score=78.30 Aligned_cols=182 Identities=9% Similarity=-0.018 Sum_probs=138.5
Q ss_pred hcCChHHHHHHHhcCCC--CC-hhhHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCC----------------
Q 036704 422 KCGSLGSARELFNFMED--PD-VVSWSSL-------IVGYAQFGCGEEALKLFRRMRSSGVRPN---------------- 475 (634)
Q Consensus 422 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------- 475 (634)
..++...|.+.|.++.+ |+ ...|..+ ..++...++..+++..+++-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999874 43 4578777 4566666666666666655544 2222
Q ss_pred ------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 036704 476 ------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDI----V 545 (634)
Q Consensus 476 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 545 (634)
......+...+...|++++|.++|+.+.. ..|+....-.+...+.+.+++++|+..|+.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234466778899999999999998874 3454335556677889999999999999988444433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKID--PT-NSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.+..+..++...|++++|+..|+++.... |. .+.+....+.++.++|+.++|...|+++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67888999999999999999999998643 55 45578899999999999999999999998754
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=3e-06 Score=70.28 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 036704 510 PTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 584 (634)
.+...+..+...+...|++++|.+.|++. ...|+ ...+..+...|...|++++|+..++++++..|.++.++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35667778888889999999999999987 66676 57888888889999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 036704 585 CNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+.++...|++++|...+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.49 E-value=6e-07 Score=73.62 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=68.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC
Q 036704 517 CVVDLLARAGRVHEAEDFINQM-AFDD-------------DIVVWKSLLASCKTHGNVDVGKRAAENILKI-------DP 575 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p 575 (634)
.....+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..+++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3444445555555555555554 1111 1338888888899999999999999999998 99
Q ss_pred CCchhH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 576 TNSAAL----VLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 576 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+++.+| +..+.++...|++++|+..|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999 9999999999999999999998875
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=1.1e-06 Score=75.68 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=101.2
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS-CKTHGNV-- 560 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~-~~~~g~~-- 560 (634)
+...|++++|...+++.... .+.+...+..+...|...|++++|.+.+++. ...| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678899999999998864 2346778889999999999999999999988 3333 67788888888 7789998
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 561 DVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
++|+..++++++..|.++.++..++.+|...|++++|...++++.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999987653
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.7e-06 Score=68.36 Aligned_cols=112 Identities=10% Similarity=-0.102 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...+......+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345566667777788888888888887753 2335677778888888888888888888877 3344 57788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 036704 554 CKTHGNVDVGKRAAENILKID------PTNSAALVLLCNIYA 589 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 589 (634)
+...|++++|+..++++++.. |.+..+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999988 877777777765543
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=1.5e-06 Score=71.78 Aligned_cols=108 Identities=8% Similarity=-0.082 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLAS 553 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 553 (634)
...+..+...+...|++++|...|+++... .+.+...+..+..+|.+.|++++|+..|++. ...| ++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 445566667778888899999888888754 2336677778888888999999999998887 3334 56788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
+...|++++|+..++++++..|.++.......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 99999999999999999999998887655543
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=2.1e-06 Score=69.33 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=87.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AF-DDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...+..+...+...|++++|.+.+++. .. +.+...+..++..+...|++++|+..++++++..|.++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456777888999999999999999988 33 346888999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 036704 589 ASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~g 608 (634)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988753
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=2.5e-05 Score=73.76 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=145.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-ChHHHHHHHhcCCC---CChhhHHHHHHHHHhc-C-ChHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG-SLGSARELFNFMED---PDVVSWSSLIVGYAQF-G-CGEEALK 462 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~a~~ 462 (634)
+..++|.++++.++..++. +..+|+.--..+...| ++++++++++.+.. .+...|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3445788888888877755 5556666666666677 58888888887763 3445666666666665 6 7888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCCHH--------HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-------
Q 036704 463 LFRRMRSSGVRPNHVTLVGVLTACSHVGLVE--------EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR------- 527 (634)
Q Consensus 463 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 527 (634)
+++++.+... -|...|+.-...+.+.|.++ ++++.++++.+. ..-+...|+....++.+.++
T Consensus 147 ~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 8888887642 25666655444444444444 788888888864 23466777777777777765
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCch
Q 036704 528 VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNV--------------------DVGKRAAENILKID------PTNSA 579 (634)
Q Consensus 528 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~ 579 (634)
++++++.++++ ...| |...|+.+...+.+.|.. ....+....+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 67888888777 3344 777888877777766653 23333333333322 56788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
++..++.+|.+.|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999864
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=2.2e-06 Score=75.66 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=98.7
Q ss_pred hcCChHHHHH---HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCCHH
Q 036704 422 KCGSLGSARE---LFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSS----GVRP-NHVTLVGVLTACSHVGLVE 493 (634)
Q Consensus 422 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 493 (634)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 443322234456667777777777777777777776541 1122 2455677777788888888
Q ss_pred HHHHHHHHHHHHhCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 036704 494 EGLQLYRIMQNEYGIIP-T----RERRSCVVDLLARAGRVHEAEDFINQM----AFDDD----IVVWKSLLASCKTHGNV 560 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~ 560 (634)
+|...+++......-.+ + ...+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887665422122 2 334667778888888888888888776 11122 23467788888899999
Q ss_pred HHHHHHHHHHHhc
Q 036704 561 DVGKRAAENILKI 573 (634)
Q Consensus 561 ~~a~~~~~~~~~~ 573 (634)
++|...++++++.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887763
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=3e-06 Score=71.90 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+.+.|++++|++.|++. ...| +...+..+..+|...|++++|+..++++++.+|.++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555666666667777777766665 2233 55666666666666777777777777777777766666777777777
Q ss_pred hcCChHHHHHHHHHHHh
Q 036704 590 SSGKWEEVARLMGSMKE 606 (634)
Q Consensus 590 ~~g~~~~A~~~~~~~~~ 606 (634)
+.|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777766666655
No 161
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=0.0002 Score=67.54 Aligned_cols=228 Identities=13% Similarity=0.017 Sum_probs=160.8
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc-C-ChHHHHH
Q 036704 355 QAGELFRLFSLMLASQTKPDHITFNDVMGACAAMA-SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKC-G-SLGSARE 431 (634)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 431 (634)
..++|+++++.++... +-+...++.--..+...+ +++++..+++.+....++ +..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3445666666666543 334456666666666777 599999999999988776 677777766666666 6 8899999
Q ss_pred HHhcCCCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC-------HH
Q 036704 432 LFNFMEDP---DVVSWSSLIVGYAQFGCGE--------EALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL-------VE 493 (634)
Q Consensus 432 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-------~~ 493 (634)
+++.+.+. +...|+--...+.+.|.++ ++++.++++.+..+ -|...|+.-...+.+.+. ++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHH
Confidence 99998864 4456665555555555555 89999999998753 377788877777777775 68
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhC-CC-------CCCHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV--------------------HEAEDFINQM-AF-------DDDIV 545 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~~~~~ 545 (634)
++++.++++... .+-|...|+.+-..+.+.|+. .+..++..++ .. .+.+.
T Consensus 226 eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 226 DELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 888888888853 344677777777777776654 3444444444 22 35788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCchhHHHHHHH
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENIL-KIDPTNSAALVLLCNI 587 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~ 587 (634)
.+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 99999999999999999999999987 5788777777666543
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.38 E-value=1.4e-06 Score=70.37 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=46.4
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C---HHHHHHHHHH
Q 036704 482 VLTACSHVGLVEEGLQLYRIMQNEYGIIPTR---ERRSCVVDLLARAGRVHEAEDFINQM-AFDD-D---IVVWKSLLAS 553 (634)
Q Consensus 482 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~---~~~~~~l~~~ 553 (634)
+...+...|++++|...|+.+.+... .+. ..+..+..++.+.|++++|.+.+++. ...| + ...+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33444555555555555555554311 111 23444445555555555555555544 1112 1 3344445555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 036704 554 CKTHGNVDVGKRAAENILKIDPTNSAAL 581 (634)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 581 (634)
+...|++++|...++++++..|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 5555555555555555555555444433
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=4e-06 Score=84.44 Aligned_cols=142 Identities=13% Similarity=0.028 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
..|..+...+.+.|++++|+..|++..+.. |+...+ . .+...+ .... ....+..+..+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~-~~~~--------~~~~~~nla~~ 326 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESKA-SESF--------LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHHH-HHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHHH-HHHH--------HHHHHHHHHHH
Confidence 356666666777777777777777766532 211000 0 000000 0000 13567788889
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 036704 522 LARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..|+++++++|.+..++..++.++.+.|++++|..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 3334 678899999999999999999999999999999999999999999999999998874
Q ss_pred -HHHHHH
Q 036704 600 -LMGSMK 605 (634)
Q Consensus 600 -~~~~~~ 605 (634)
.+++|.
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 455554
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.37 E-value=6.6e-06 Score=69.72 Aligned_cols=127 Identities=9% Similarity=-0.113 Sum_probs=95.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
.+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++.... .+.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 46667777888888888888888887763 335777888888888889999999988888864 234566778888888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 523 ARAGRVHEAEDFINQM-AFDD-DIVVWK--SLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 523 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
...|++++|.+.+++. ...| +...+. ..+..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8999999999988887 3333 444553 344447778899999988887654
No 165
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=4.7e-07 Score=71.85 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 036704 525 AGRVHEAEDFINQM-AF---DD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
.|++++|+..|++. .. .| +...+..+..+|...|++++|+..++++++..|+++.++..++.++.+.|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666665 33 13 344666666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 036704 600 LMGSMKE 606 (634)
Q Consensus 600 ~~~~~~~ 606 (634)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=3.5e-06 Score=68.84 Aligned_cols=113 Identities=8% Similarity=-0.132 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036704 474 PNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLL 551 (634)
Q Consensus 474 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 551 (634)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35677778888888888888888888888764 2335677788888888889999998888887 3334 677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 036704 552 ASCKTHGNVDVGKRAAENILKIDPT-----NSAALVLLCNIY 588 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 588 (634)
.++...|++++|+..++++++..|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887 555555554443
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.33 E-value=2.2e-06 Score=72.61 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC-----CCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYG-----IIP-----------TRERRSCVVDLLARAGRVHEAEDFINQM- 538 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 538 (634)
...+......+.+.|++++|...|.+...... -.| +...+..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455556666667777777777766654200 001 1233444444444455555555444444
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 539 AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 539 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
...| +...|..++.+|...|++++|+..++++++.+|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2222 344444444444455555555555555555444444
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=2.6e-06 Score=68.78 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chhHHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-A-FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN-------SAALVL 583 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 583 (634)
..+..+...+...|++++|...+++. . .+.+...+..++..+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34556667777778888888877776 2 23356777888888888888888888888888877765 778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 584 LCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
++.++.+.|++++|.+.++++.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888888888888888888887643
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=1.9e-06 Score=87.17 Aligned_cols=118 Identities=13% Similarity=0.007 Sum_probs=97.6
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 560 (634)
...+.+.|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566788999999999988864 2335778888999999999999999999988 4444 678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCChHHHHHHHH
Q 036704 561 DVGKRAAENILKIDPTNSAALVLLCNI--YASSGKWEEVARLMG 602 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 602 (634)
++|++.++++++..|+++.++..++.+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888 888999999999988
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=5.7e-06 Score=69.68 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=82.4
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RERRSCVVDLLARAGRVHEAEDFINQM----AFDDD----IV 545 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~ 545 (634)
++..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554432111111 124555666666677777777766665 11111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDP------TNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.+..+...+...|++++|...++++++..+ ....++..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667778888888999999998888876432 1345778889999999999999999988765
No 171
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=6.1e-06 Score=77.10 Aligned_cols=111 Identities=6% Similarity=-0.174 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036704 475 NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLA 552 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 552 (634)
+...+..+...+...|++++|...|+++... .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566777778888888888888888888864 2236677788888888888888888888887 5455 5678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036704 553 SCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNI 587 (634)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 587 (634)
++...|++++|+..++++++..|+++..+...++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 88888888888888888888888765444434333
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.28 E-value=1.9e-06 Score=82.94 Aligned_cols=147 Identities=10% Similarity=-0.002 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...+..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 35666677777888888888888887765 344321 22334444433222 1 1367788899
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-hcCChHHHH
Q 036704 522 LARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA-SSGKWEEVA 598 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~ 598 (634)
|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..|+++++..|.++.++..+..+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 4444 67899999999999999999999999999999999999999988744 456788888
Q ss_pred HHHHHHHhCC
Q 036704 599 RLMGSMKERG 608 (634)
Q Consensus 599 ~~~~~~~~~g 608 (634)
..+++|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 9998887654
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.27 E-value=8e-06 Score=63.68 Aligned_cols=101 Identities=13% Similarity=-0.018 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD---DIVVWKSLL 551 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~ 551 (634)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 445566666777777888888877777753 2334566777777788888888888888776 3333 477888888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 036704 552 ASCKTH-GNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 552 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.++... |++++|.+.++++.+..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888889988888888888754
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=9.5e-06 Score=65.37 Aligned_cols=109 Identities=6% Similarity=-0.050 Sum_probs=69.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C----CCCC----HHHHH
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-A----FDDD----IVVWK 548 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~~~----~~~~~ 548 (634)
.+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...+++. . ..++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4445555555666666666666666543 1234455556666666666666666666655 1 1122 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
.++..+...|++++|...++++++..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 888888888999999999998888887 5666666655543
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.8e-05 Score=79.37 Aligned_cols=162 Identities=6% Similarity=-0.081 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHhcccCCHHHHHHHHHHHHHHh---CCCC-ChhH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGV-RPNH----VTLVGVLTACSHVGLVEEGLQLYRIMQNEY---GIIP-TRER 514 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 514 (634)
+..+...|...|++++|.+++..+...-- .++. .+.+.+-..+...|+++.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566667777777777776666543210 1111 122233334445677777777776654321 2222 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----ch
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-----A--FDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKID---PTN----SA 579 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 579 (634)
+..+...|...|++++|.++++++ . .++ ...++..++..|...|++++|...+++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777788888887777765 1 112 24467777777888888888888887776532 222 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55566667777788888877766654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=2.4e-05 Score=62.89 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 036704 516 SCVVDLLARAGRVHEAEDFINQM-AFDD-DI---VVWKSLLASCKTHGNVDVGKRAAENILKIDPTN---SAALVLLCNI 587 (634)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 587 (634)
..+...+...|++++|.+.|++. ...| +. ..+..++.++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34567778889999999998887 2223 22 577788888889999999999999999988888 6778889999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036704 588 YASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~g 608 (634)
+.+.|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999998887643
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.21 E-value=7.2e-06 Score=79.75 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIY 588 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 588 (634)
+...+..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|+..++++++..|.+..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3566778889999999999999999988 5555 6789999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 036704 589 ASSGKWEEVARL 600 (634)
Q Consensus 589 ~~~g~~~~A~~~ 600 (634)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888887654
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.18 E-value=7.2e-06 Score=82.24 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=93.7
Q ss_pred hcccCCHHHHHHHHHHHHHHhC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYG--IIP----TRERRSCVVDLLARAGRVHEAEDFINQM---------AFDDD-IVVWKS 549 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~ 549 (634)
+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466788888877777664321 112 2456777888888888888888887775 34444 458899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036704 550 LLASCKTHGNVDVGKRAAENILK-----IDPTNSA---ALVLLCNIYASSGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 550 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 609 (634)
|+..|...|++++|+.+++++++ ..|+++. ....+..++.++|++++|+.++++++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886 5677655 445778888899999999999999987543
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.18 E-value=9.1e-06 Score=64.64 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=72.4
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036704 479 LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKT 556 (634)
Q Consensus 479 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 556 (634)
+..+...+.+.|++++|...++++.+. .+.+...+..+..++...|++++|+..+++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445556677888888888888888754 2335667777888888888888888888887 4444 57788888888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 036704 557 HGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 557 ~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
.|++++|+..++++++..|.++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999888754
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=1.4e-05 Score=70.18 Aligned_cols=94 Identities=18% Similarity=0.050 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM-AFDD-D----------------IVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
.+..+...+.+.|++++|++.|++. ...| + ...+..+..+|...|++++|+..++++++..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555666666666666666655 1111 1 36888899999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 576 TNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 576 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
.++.++..++.+|...|++++|.+.+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.14 E-value=0.00035 Score=65.59 Aligned_cols=178 Identities=10% Similarity=0.055 Sum_probs=93.9
Q ss_pred hHHHHHHHhcCCC---CChhhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC-HHHHHHHH
Q 036704 426 LGSARELFNFMED---PDVVSWSSLIVGYAQFG--CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGL-VEEGLQLY 499 (634)
Q Consensus 426 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 499 (634)
+++++.+++.+.. .+..+|+.-...+...+ ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3445555554432 23344554444444444 2556666666666553 2244444444444444454 35666666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 036704 500 RIMQNEYGIIPTRERRSCVVDLLARA--------------GRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH------ 557 (634)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~------ 557 (634)
+.+... .+-+...|+.....+.+. +.++++++++.+. ...| |...|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 666543 122444444333333332 3456666666665 2233 566665555544443
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---HhcCChHHHHHHHHHHHh
Q 036704 558 -----GNVDVGKRAAENILKIDPTNSAALVLLCNIY---ASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 558 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~ 606 (634)
+.++++++.++++++..|++...+..++... ...|..++....+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3467777778888888887755544443322 135667777777777764
No 182
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.13 E-value=3.3e-05 Score=74.13 Aligned_cols=130 Identities=8% Similarity=-0.061 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh
Q 036704 441 VVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPN--------------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY 506 (634)
Q Consensus 441 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 506 (634)
...+..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++++.+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 34566677777788888888888888777532211 477888888889999999999999988864
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 036704 507 GIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVG-KRAAENILK 572 (634)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 572 (634)
.+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++...|+.++| ...+++++.
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2336777888889999999999999999887 4444 577888888889899998888 456666654
No 183
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.12 E-value=3.6e-05 Score=61.74 Aligned_cols=104 Identities=7% Similarity=-0.145 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLA 523 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (634)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|++.+++..+...-.+. .+..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~----- 82 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA--DYKLI----- 82 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--hhHHH-----
Confidence 3444455555555555555555555432 112444445555555555555555555544422000000 00000
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036704 524 RAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 575 (634)
..++..++.++...|++++|++.|+++++..|
T Consensus 83 --------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 83 --------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 12455566666666777777777777666655
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.2e-06 Score=68.47 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN------SAALV 582 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 582 (634)
+...+..+...+.+.|++++|++.+++. ...| +...+..+..++...|++++|+..++++++..|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677788888889999999988887 3334 67888899999999999999999999999999998 77788
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 036704 583 LLCNIYASSGKWEEVARLMGS 603 (634)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~ 603 (634)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877777665543
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.00087 Score=62.95 Aligned_cols=228 Identities=10% Similarity=0.020 Sum_probs=152.9
Q ss_pred HhHHHHHHHHHHHCCCCCCH-hHHHHHHHHhhcccc----------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 036704 356 AGELFRLFSLMLASQTKPDH-ITFNDVMGACAAMAS----------LEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCG 424 (634)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (634)
.++|+++.+.+... .|+. ..++.--..+...+. ++++..+++.+....++ +..+|+.-...+.+.+
T Consensus 46 s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 46 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 122 (331)
T ss_dssp SHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccC
Confidence 34566666666553 3333 334433333332222 67888899998887766 6777777666666777
Q ss_pred --ChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc---------
Q 036704 425 --SLGSARELFNFMED---PDVVSWSSLIVGYAQFGC-GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHV--------- 489 (634)
Q Consensus 425 --~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------- 489 (634)
.+++++.+++.+.+ .|...|+--..++...|. ++++++.++++.+..+ -|...|+.....+...
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-----
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccc
Confidence 48899999998874 556677777777777787 5899999999998753 3666666555444443
Q ss_pred -----CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCH-HHHHHHH
Q 036704 490 -----GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARA-----------GRVHEAEDFINQM-AFDDDI-VVWKSLL 551 (634)
Q Consensus 490 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~~~~-~~~~~l~ 551 (634)
+.++++++.+...... .+-|...|+-+-..+.+. +.++++++.++++ ...||. ..+..++
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 4578888888888853 233666676555555554 4578899999888 555653 2332222
Q ss_pred HH---HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 552 AS---CKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 552 ~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
.. ....|..++....+.++.+++|....-|..+...+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 21 224578889999999999999998888887765443
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=8.3e-06 Score=68.93 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 515 RSCVVDLLARAGRVHEAEDFINQM-AF------------------DD-DIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~-~~------------------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
+......+.+.|++++|++.|++. .. .| +...+..+..+|...|++++|+..++++++.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 445667778888888888888876 22 12 23577888888888888888888888888888
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 575 PTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
|.++.+|..++.+|...|++++|...+++..+.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 888888888888888888888888888887764
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.10 E-value=1.6e-05 Score=60.58 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+...+..++.+|...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67788888999999999999999999999999999999999999999999999999999887753
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=6.2e-05 Score=75.40 Aligned_cols=159 Identities=5% Similarity=-0.027 Sum_probs=119.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPN----------------HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT 511 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 511 (634)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888876532211 124677889999999999999999988765333333
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 036704 512 R----ERRSCVVDLLARAGRVHEAEDFINQM-------AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKI------ 573 (634)
Q Consensus 512 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 573 (634)
. .+.+.+...+...|++++|.++++.. +..+ -..++..++..+...|++++|...++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22334445556778999999998876 2233 2567888999999999999999999998763
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 574 DPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 574 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222455888999999999999999999998875
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=1.4e-05 Score=62.86 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 531 AEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 531 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
|++.+++. ...| +...+..+...|...|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444 2233 4555566666666666666666666666666666666666666666666666666666665543
No 190
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.07 E-value=6.2e-06 Score=78.78 Aligned_cols=217 Identities=10% Similarity=0.097 Sum_probs=160.2
Q ss_pred cccccccccchhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHH
Q 036704 8 ICHLPRWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLI 87 (634)
Q Consensus 8 ~~~l~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 87 (634)
.+..|.+.++|+.++...|++.+|++.| +...||..|. .++....+.|.+++-+..+.-.++. .- ++..=+.|+
T Consensus 50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~-eVi~~A~~~~~~edLv~yL~MaRk~-~k--e~~IDteLi 123 (624)
T 3lvg_A 50 RCNEPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYM-EVVQAANTSGNWEELVKYLQMARKK-AR--ESYVETELI 123 (624)
T ss_dssp SCCCCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSS-HHHHHTTTSSCCTTHHHHHHTTSTT-CC--STTTTHHHH
T ss_pred HhCCccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHH-HHHHHHHhCCCHHHHHHHHHHHHHH-hc--ccccHHHHH
Confidence 4566888999999999999999998775 3455668888 8999999999999999999877764 33 444556889
Q ss_pred HHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC------------------------
Q 036704 88 SACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ------------------------ 143 (634)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 143 (634)
-+|++.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+..
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999877666542 47777777888888889999999888887652
Q ss_pred CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHH
Q 036704 144 RNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALI 223 (634)
Q Consensus 144 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 223 (634)
.++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++...+++..... -.....+++.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 3677888888889988888877655444432 222 2334566677888888888888776621 234567888888
Q ss_pred HHHHhcCChhHHHHHHhccCC
Q 036704 224 AMYTKFDRILDAWNVFSSIAR 244 (634)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~~~~ 244 (634)
-.|++- +.++..+.++....
T Consensus 271 ILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSS
T ss_pred HHHHhc-CHHHHHHHHHHHHH
Confidence 888775 56666666655443
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=1.9e-05 Score=66.35 Aligned_cols=132 Identities=14% Similarity=0.027 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC----hh
Q 036704 443 SWSSLIVGYAQFGCGEEALKLFRRMRSSGVR-PN----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT----RE 513 (634)
Q Consensus 443 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 513 (634)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666667777777766665543111 11 135666667777777777777777776543211111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 514 RRSCVVDLLARAGRVHEAEDFINQM----AFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
.+..+...+...|++++|.+.+++. ...+ ....+..+...+...|++++|...++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566777778888888888887766 1111 23467778888899999999999999887643
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.05 E-value=5.5e-06 Score=65.54 Aligned_cols=93 Identities=12% Similarity=0.061 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHHHHhCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036704 489 VGLVEEGLQLYRIMQNEYGI-IP-TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGK 564 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 564 (634)
.|++++|+..|+++.+. +. .| +...+..+..+|...|++++|++.+++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 56777778888777742 10 12 3556777888888888888888888887 3334 5778888899999999999999
Q ss_pred HHHHHHHhcCCCCchhHH
Q 036704 565 RAAENILKIDPTNSAALV 582 (634)
Q Consensus 565 ~~~~~~~~~~p~~~~~~~ 582 (634)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998876543
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.05 E-value=6.2e-06 Score=67.62 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=75.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-------CC
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNEYGIIP-----T-----RERRSCVVDLLARAGRVHEAEDFINQM-AF-------DD 542 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~ 542 (634)
.....+.+.|++++|...|++..+-..-.| + ...|..+..++.+.|++++|+..+++. .. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 334445555666666666665553311100 1 226777778888888888888877776 44 77
Q ss_pred C-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 543 D-IVVW----KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 543 ~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+ ...| .....++...|++++|+..|++++++.|.+......+..
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 5 5578 899999999999999999999999999998877666543
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00015 Score=74.71 Aligned_cols=168 Identities=11% Similarity=-0.012 Sum_probs=129.3
Q ss_pred hHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC--
Q 036704 426 LGSARELFNFMED--P-DVVSWSSLIVGYAQFGC----------GEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVG-- 490 (634)
Q Consensus 426 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-- 490 (634)
.++|.+.++.+.. | +...|+.--..+...|+ ++++++.++++.+... -+..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccc
Confidence 4556666666653 3 33455555555555555 8899999999988742 26777877777777888
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG-RVHEAEDFINQM-AFDD-DIVVWKSLLASCKTH---------- 557 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---------- 557 (634)
+++++.+.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 679999999999974 2346777877777777888 899999999988 5555 788888888877663
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 036704 558 ----GNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEE 596 (634)
Q Consensus 558 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 596 (634)
+.++++++.+++++..+|.+..+|..+.+++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
No 195
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=1.9e-05 Score=79.82 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=58.9
Q ss_pred HHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHH
Q 036704 419 MYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEG 495 (634)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 495 (634)
.+.+.|++++|.+.+++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44555666666666665432 234455666666666666666666666666552 12355555566666666666666
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 036704 496 LQLYRIMQNEYGIIPTRERRSCVVDL--LARAGRVHEAEDFIN 536 (634)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 536 (634)
.+.++++.+... .+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666554311 122233333333 555566666666555
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.00 E-value=3e-05 Score=57.68 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA 589 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 589 (634)
...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666777777777777777766 2223 56677777888888888888888888888888888888888877776
Q ss_pred hcC
Q 036704 590 SSG 592 (634)
Q Consensus 590 ~~g 592 (634)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=2.4e-05 Score=76.02 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDD-DIVVWKSLLASC 554 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 554 (634)
...+..+...+.+.|++++|.+.|+++.+.. +.. ......+++. ...| +...|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3446666666777777777777777666420 000 0000111110 1223 456888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 555 KTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
.+.|++++|+..++++++.+|+++.++..++.+|...|++++|++.++++.+..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998753
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.95 E-value=6.7e-05 Score=55.81 Aligned_cols=70 Identities=17% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036704 541 DDDIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVR 610 (634)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 610 (634)
++++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577888888888765555 799999999999999999999999999999999999999999999987654
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=1.9e-05 Score=75.95 Aligned_cols=116 Identities=11% Similarity=-0.002 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCK 555 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 555 (634)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...+..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 455677777888888888888888887743 333221 223344444443332 137888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 556 THGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+.|++++|+..++++++.+|+++.++..++.+|...|++++|...|+++.+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999887643
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=9.8e-05 Score=60.12 Aligned_cols=112 Identities=4% Similarity=-0.076 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKR 565 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 565 (634)
+++++|.+.|++..+. + .|+.. |...|...+..++|.++|++.....++.....+...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3456666666666543 3 22222 555555666666666666666333566666677777766 677777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 036704 566 AAENILKIDPTNSAALVLLCNIYAS----SGKWEEVARLMGSMKERGV 609 (634)
Q Consensus 566 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 609 (634)
.++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777765 456777777777777 6788888888887777664
No 201
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.92 E-value=7.7e-05 Score=74.99 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 544 IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
...|..+..+|.+.|++++|+..++++++.+|+++.+|..++.+|...|++++|...|+++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56888999999999999999999999999999999999999999999999999999999998753
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.89 E-value=1e-05 Score=66.16 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=66.6
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 036704 524 RAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGN----------VDVGKRAAENILKIDPTNSAALVLLCNIYASS 591 (634)
Q Consensus 524 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 591 (634)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344566666666665 3333 56666666666666654 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 036704 592 G-----------KWEEVARLMGSMKERG 608 (634)
Q Consensus 592 g-----------~~~~A~~~~~~~~~~g 608 (634)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998743
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=8.6e-05 Score=57.62 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+...+..+...+...|++++|+..++++++..|.++.++..++.++.+.|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998754
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.64 E-value=0.00012 Score=59.75 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036704 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR----------VHEAEDFINQM-AFDD-DIVVWKSLLASCKT 556 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 556 (634)
.+.+++|.+.++...+. -+.+...+..+..++...++ +++|+..|++. .+.| +..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34455666666665543 12245555555555555544 45777777776 5555 56678888888876
Q ss_pred c-----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 557 H-----------GNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 557 ~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
. |++++|+..|+++++++|++......+-. .++|.++.-.+...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHHHHHHHHHSS
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHhccCcccccc
Confidence 6 48999999999999999998755444422 245556555555443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00019 Score=53.21 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+...+..+...+...|++++|+..++++++..|.++.++..++.++.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788889999999999999999999999999999999999999999999999999999988753
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.00011 Score=73.73 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=72.1
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---chhH
Q 036704 520 DLLARAGRVHEAEDFINQM---------AFDDD-IVVWKSLLASCKTHGNVDVGKRAAENILK-----IDPTN---SAAL 581 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~ 581 (634)
..+...|++++|+.++++. ...|+ ..+++.++.+|...|++++|+.+++++++ ..|++ ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999998876 23343 45889999999999999999999999886 44554 4578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.|+.+|..+|++++|+.++++..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998874
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.61 E-value=0.0012 Score=67.92 Aligned_cols=150 Identities=9% Similarity=0.015 Sum_probs=121.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCC----------HHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGL----------VEEGLQLYRIMQNEYGIIPTRERRSCVVDLL 522 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (634)
....++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+. .+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34457889999999987 454 5556655555556666 89999999999864 344677788777888
Q ss_pred HhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc------
Q 036704 523 ARAG--RVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHG-NVDVGKRAAENILKIDPTNSAALVLLCNIYASS------ 591 (634)
Q Consensus 523 ~~~g--~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 591 (634)
.+.| +++++++.++++ ...| +..+|+.-..++...| .++++++.++++++.+|.+..+|+..+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 679999999999 4344 7889999999988999 899999999999999999999999999998874
Q ss_pred --------CChHHHHHHHHHHHhC
Q 036704 592 --------GKWEEVARLMGSMKER 607 (634)
Q Consensus 592 --------g~~~~A~~~~~~~~~~ 607 (634)
+.+++|++.++++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678999999888764
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.59 E-value=0.0001 Score=72.59 Aligned_cols=61 Identities=8% Similarity=0.081 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 545 VVWKSLLASCKTHGNVDVGKRAAENILK-----IDPTN---SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.+++.++.+|...|++++|+.+++++++ ..|++ ...++.|+.+|..+|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3555666666666666666666666554 22332 3355566666666666666666666554
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.49 E-value=0.00055 Score=53.46 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
|...|++..+. .+.+...+..+...|...|++++|++.+++. ...| +...+..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666531 2234566667777777777888887777776 3333 566778888888888888888888888888
Q ss_pred cCCC
Q 036704 573 IDPT 576 (634)
Q Consensus 573 ~~p~ 576 (634)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7764
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.46 E-value=0.0023 Score=51.90 Aligned_cols=113 Identities=7% Similarity=-0.074 Sum_probs=93.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChH
Q 036704 454 FGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLAR----AGRVH 529 (634)
Q Consensus 454 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 529 (634)
.+++++|.++|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+......|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356889999999999987 44444 667788888899999999998864 356777788888887 89999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 036704 530 EAEDFINQMAFDDDIVVWKSLLASCKT----HGNVDVGKRAAENILKIDP 575 (634)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 575 (634)
+|.++|++.....++.....+...|.. .++.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998444678889999999988 8999999999999988653
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.46 E-value=0.00024 Score=70.13 Aligned_cols=99 Identities=10% Similarity=-0.033 Sum_probs=51.8
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 036704 483 LTACSHVGLVEEGLQLYRIMQNEY--GIIPT----RERRSCVVDLLARAGRVHEAEDFINQM---------AFDDD-IVV 546 (634)
Q Consensus 483 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~ 546 (634)
+..+.+.|++++|..++++..... -+.|+ ..+++.+..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444445566666666666655321 01111 234555556666666666666665554 22232 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchhH
Q 036704 547 WKSLLASCKTHGNVDVGKRAAENILK-----IDPTNSAAL 581 (634)
Q Consensus 547 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 581 (634)
++.++..|...|++++|+.+++++++ ..|+++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 55566666666666666666666665 345555433
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.44 E-value=0.00025 Score=53.60 Aligned_cols=79 Identities=8% Similarity=0.130 Sum_probs=59.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 036704 518 VVDLLARAGRVHEAEDFINQM-AFDD-DIV-VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKW 594 (634)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 594 (634)
....+.+.|++++|++.+++. ...| +.. .+..+..++...|++++|+..++++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677788888888888887 3334 566 88888888999999999999999999999988877633 445
Q ss_pred HHHHHHHHHH
Q 036704 595 EEVARLMGSM 604 (634)
Q Consensus 595 ~~A~~~~~~~ 604 (634)
.+|...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5666666544
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.36 E-value=0.00055 Score=51.68 Aligned_cols=60 Identities=22% Similarity=0.382 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 549 SLLASCKTHGNVDVGKRAAENILKIDPTNSA-ALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
..+..+...|++++|+..++++++..|.++. ++..++.+|...|++++|.+.+++..+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3566788999999999999999999999999 99999999999999999999999998754
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.33 E-value=2.1e-06 Score=82.00 Aligned_cols=200 Identities=6% Similarity=0.023 Sum_probs=103.3
Q ss_pred CcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 036704 114 DAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSG 193 (634)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 193 (634)
.+.+|..|..+....+++.+|+..|-+ ..|+..|..+|....+.|.+++-+..+...++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 455677777777777777776665533 3455566777777777777777777766555442 233333456667777
Q ss_pred CCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCC-C
Q 036704 194 LCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEME-S 272 (634)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~-~ 272 (634)
.+++.+.++++ -.|+..-...+.+-|...|.++.|.-+|..+..-.. +-..+.+.++-....+.-. .
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak-----LAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR-----LASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT-----TSSSSSSCSGGGSSTTTTTTC
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH-----HHHHHHHHHHHHHHHHHHHhc
Confidence 77666555444 234444444555666666777666666655432111 0001111111000001111 1
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHH
Q 036704 273 PNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHS 334 (634)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 334 (634)
.++.||-.+-.+|...+.+..|.-.--.+.-. | ..+..++.-|-..|.+++.+.+++
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46666777777777777666654443333211 1 112233444555555554444443
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.00057 Score=51.79 Aligned_cols=66 Identities=8% Similarity=0.015 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036704 511 TRERRSCVVDLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPT 576 (634)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 576 (634)
+...+..+..+|...|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++..|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4556667777777777777777777776 3333 4567777888888888888888888887776543
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.22 E-value=0.0017 Score=63.85 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=70.9
Q ss_pred ccCCHHHHHHHHHHHHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 036704 488 HVGLVEEGLQLYRIMQNEY--GIIPT----RERRSCVVDLLARAGRVHEAEDFINQM---------AFDDD-IVVWKSLL 551 (634)
Q Consensus 488 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~ 551 (634)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3477888888887766532 12222 456778888888889998888888876 34454 45889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCchhHH
Q 036704 552 ASCKTHGNVDVGKRAAENILK-----IDPTNSAALV 582 (634)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 582 (634)
..|...|++++|+.+++++++ ..|+++.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999886 5677775443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.012 Score=55.43 Aligned_cols=137 Identities=9% Similarity=-0.060 Sum_probs=63.2
Q ss_pred CChhhHHHHHHHH--HhcC---ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcc---cC--CHHHHH---HHHHHHHH
Q 036704 439 PDVVSWSSLIVGY--AQFG---CGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSH---VG--LVEEGL---QLYRIMQN 504 (634)
Q Consensus 439 ~~~~~~~~l~~~~--~~~~---~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~g--~~~~a~---~~~~~~~~ 504 (634)
.+...|...+++. ...+ +..+|..+|++.++. .|+ ...+..+..++.. .+ ...... ..++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3455566655543 3333 346788888888876 555 3444444433320 00 000111 11111110
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 505 EYGIIPTRERRSCVVDLLARAGRVHEAEDFINQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 505 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
....+.+..++..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0011334444444444444445555555555555 223444444455555555555555555555555555543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.10 E-value=0.0033 Score=62.04 Aligned_cols=87 Identities=7% Similarity=0.141 Sum_probs=59.6
Q ss_pred HHHHhcCChHHHHHHHHhC------CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---chhH
Q 036704 520 DLLARAGRVHEAEDFINQM------AFDD----DIVVWKSLLASCKTHGNVDVGKRAAENILK-----IDPTN---SAAL 581 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~------~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~ 581 (634)
..+.+.|++++|++++++. -..| ...+++.++.+|...|++++|+.+++++++ ..|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455667788888777765 1112 134677777888888888888888887775 23443 3467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 582 VLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
+.|+.+|..+|++++|+.+++++.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7778888888888888888777653
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.09 E-value=0.063 Score=41.50 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=109.5
Q ss_pred HHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036704 444 WSSLIVG--YAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDL 521 (634)
Q Consensus 444 ~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (634)
...|+.+ +...|..++..++..+..... +..-|+-+|.-...+-+-+-..++++.+-+-+.+.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------ 72 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------ 72 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH------------
Confidence 3445544 455788999999998887642 56667777776667777777778877775433322
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 036704 522 LARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLM 601 (634)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (634)
.+|++....+.+-.++ .+...++..+......|+-++-.+++..++...|.++..+..++.+|.+.|+..+|.+++
T Consensus 73 --~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 73 --KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp --GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 3455555555555553 244556667778889999999999999988888889999999999999999999999999
Q ss_pred HHHHhCCCc
Q 036704 602 GSMKERGVR 610 (634)
Q Consensus 602 ~~~~~~g~~ 610 (634)
.++=++|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999975
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.06 E-value=0.0022 Score=57.74 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=67.6
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CChHH
Q 036704 528 VHEAEDFINQM-AFDDD---IVVWKSLLASCKT-----HGNVDVGKRAAENILKIDPTN-SAALVLLCNIYASS-GKWEE 596 (634)
Q Consensus 528 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 596 (634)
...|...+++. ...|+ ...|..++..|.. -|+.++|.+.|+++++++|.. ..++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 45554 5577777777777 489999999999999999974 88999999988884 89999
Q ss_pred HHHHHHHHHhCCCcCCCC
Q 036704 597 VARLMGSMKERGVRKVPG 614 (634)
Q Consensus 597 A~~~~~~~~~~g~~~~~~ 614 (634)
|.+.+++.++...+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877765565
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.95 E-value=0.0061 Score=46.34 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 036704 513 ERRSCVVDLLARAGRVHEAEDFINQM-----A----FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVL 583 (634)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 583 (634)
.-...+...+.+.|+++.|...++.. . ..+...++..+..++.+.|+++.|...++++++..|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445666666777777777776665 1 12346788999999999999999999999999999999888776
Q ss_pred HH
Q 036704 584 LC 585 (634)
Q Consensus 584 l~ 585 (634)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.78 E-value=0.0075 Score=48.67 Aligned_cols=92 Identities=10% Similarity=0.033 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHH
Q 036704 491 LVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAG---RVHEAEDFINQM-AFD-D--DIVVWKSLLASCKTHGNVDVG 563 (634)
Q Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~a 563 (634)
....+.+-|.+.... + .++..+...+..++++.+ +.++++.+++.. ... | ....+-.+..+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344555556555442 3 366777777777888777 566788888777 222 4 355777888889999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHH
Q 036704 564 KRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 564 ~~~~~~~~~~~p~~~~~~~~l 584 (634)
.+.++.+++..|++..+....
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999888766654
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.72 E-value=0.0047 Score=49.82 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=66.0
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCChHHHHHH
Q 036704 528 VHEAEDFINQM--AFDDDIVVWKSLLASCKTHG---NVDVGKRAAENILKID-P-TNSAALVLLCNIYASSGKWEEVARL 600 (634)
Q Consensus 528 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (634)
...+.+.|.+. ...++..+...+.+++.+.+ +.++++.+++.+.+.+ | ++...++.++.++.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34445555544 33478889999999999988 6779999999999988 7 5688899999999999999999999
Q ss_pred HHHHHhC
Q 036704 601 MGSMKER 607 (634)
Q Consensus 601 ~~~~~~~ 607 (634)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999863
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.65 E-value=0.019 Score=54.08 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHhc--cc---CCHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHH----hcCC-------hHHHHHHH
Q 036704 473 RPNHVTLVGVLTACS--HV---GLVEEGLQLYRIMQNEYGIIPTR-ERRSCVVDLLA----RAGR-------VHEAEDFI 535 (634)
Q Consensus 473 ~p~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~----~~g~-------~~~A~~~~ 535 (634)
+.+...|...+++.. .. .+..+|..+|+++.+. .|+. ..+..+..+|. ..+. ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 556777877776543 23 3457899999999854 6653 34443333332 1111 11222222
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 536 NQM-AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 536 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
..+ ..+.++.++..+...+...|++++|+..+++++.++| +...|..+++++.-.|++++|.+.+++..+.+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 222 2345788888888888888999999999999999997 56778899999999999999999999988754
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.37 E-value=0.033 Score=41.01 Aligned_cols=69 Identities=9% Similarity=-0.008 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036704 509 IPTRERRSCVVDLLARAGR---VHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN 577 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 577 (634)
+.+...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..|+++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456666777777754444 68888888887 4444 57788888888889999999999999999988873
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.09 E-value=0.094 Score=40.58 Aligned_cols=93 Identities=10% Similarity=0.009 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 036704 490 GLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHE---AEDFINQM-AFD-D--DIVVWKSLLASCKTHGNVDV 562 (634)
Q Consensus 490 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~ 562 (634)
.....+.+-|.+.... |. ++..+--.+..++.+..+... ++.+++.+ ... | ....+-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344455555555443 33 666666667777777776555 77777776 322 3 23456677788999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHH
Q 036704 563 GKRAAENILKIDPTNSAALVLL 584 (634)
Q Consensus 563 a~~~~~~~~~~~p~~~~~~~~l 584 (634)
|.+.++.+++..|.+..+....
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999988776654
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.07 E-value=0.025 Score=42.81 Aligned_cols=65 Identities=14% Similarity=-0.026 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 543 DIVVWKSLLASCKTHGNVDVGKRAAENILKID-------PTNSAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
+..-...++..+...|+++.|...++.+++.. +..+.++..++.++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556688899999999999999999998742 345678999999999999999999999999763
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.74 E-value=0.072 Score=57.90 Aligned_cols=130 Identities=6% Similarity=-0.058 Sum_probs=70.3
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHH
Q 036704 414 NGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVE 493 (634)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 493 (634)
..++..+.+.|..+.|.++.+. + ..-.......|+++.|.++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 5556666666777776665532 1 11122344556777776664332 35566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036704 494 EGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENI 570 (634)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 570 (634)
.|.+.|.++.. +..+...|...|+.+...++-+......+ ++....+|...|++++|++++.+.
T Consensus 699 ~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777776542 33445555555655554444333311111 122333455566666666665553
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.70 E-value=2.8 Score=44.89 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=91.9
Q ss_pred HHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH--HhhcCChHHHHHHHhcCCC-CChh-hHH---HHHHHHHhcC
Q 036704 383 GACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDM--YVKCGSLGSARELFNFMED-PDVV-SWS---SLIVGYAQFG 455 (634)
Q Consensus 383 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~ 455 (634)
..+...|+.+....++..+.+.. +..+...+..+ +.-.|+.+.+..+++.+.. .++. -|. ++.-+|+-.|
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 34556777777777777766532 22333333333 3356777776666666542 2322 232 2344566778
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRV-HEAEDF 534 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 534 (634)
+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.. ...|.+..-..+.-+....|+. .++++.
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 8777777888877642 22222222333344445666666666665543 2344444444444444445543 677888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh
Q 036704 535 INQMAFDDDIVVWKSLLASCKT 556 (634)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~~~~~ 556 (634)
+..+...+|..+-...+.++..
T Consensus 652 L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 652 LDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHH
Confidence 8888556666655555555443
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.52 E-value=2.6 Score=43.28 Aligned_cols=261 Identities=9% Similarity=-0.025 Sum_probs=132.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHhHH
Q 036704 280 TIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAGEL 359 (634)
Q Consensus 280 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a 359 (634)
.-+..+.+.+++...+..+.. .+.+...-.....+....|+...|......+-..+.. ..+..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~------------~p~~c 139 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS------------QPNAC 139 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC------------CCTHH
T ss_pred HHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC------------CcHHH
Confidence 345566677777766654432 1334444445556666677766565544444433311 23344
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchh-HHHHHHHHHhhcCChHHHHHHHhcCCC
Q 036704 360 FRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVF-VMNGLMDMYVKCGSLGSARELFNFMED 438 (634)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 438 (634)
-.+|....+.|...+...+.. +......|+...|..+...+ +++.. ....++..+.+ ...+....... .
T Consensus 140 ~~l~~~~~~~g~lt~~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~ 209 (618)
T 1qsa_A 140 DKLFSVWRASGKQDPLAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFARTT-G 209 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHHS-C
T ss_pred HHHHHHHHHCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhcc-C
Confidence 456666665553333233322 34444555666555554322 22222 22333333322 22333333322 2
Q ss_pred CChhh---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC
Q 036704 439 PDVVS---WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHV----TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT 511 (634)
Q Consensus 439 ~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 511 (634)
++... +..-+.-+.+ .+.+.|...+....+.. ..+.. ....+.......+...++...+..... ..++
T Consensus 210 ~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~ 284 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQS 284 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCC
T ss_pred CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCC
Confidence 22221 1111222333 47788888888876543 22322 233344445555534555556665443 2234
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 512 RERRSCVVDLLARAGRVHEAEDFINQMAFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.....-.+....+.|+++.|...|+.++..+ .....-=+..++...|+.++|..+|+++.+
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4344444555567789999999998884432 233333445567778888888888888875
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.17 E-value=0.33 Score=52.62 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=87.2
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 036704 378 FNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCG 457 (634)
Q Consensus 378 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 457 (634)
...++..+.+.|.++.|.++.+. .. .-.......|++++|.++.+.+. +...|..+...+.+.+++
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCH
Confidence 36677777888888888776532 11 11344567899999999988774 567899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036704 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQ 537 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (634)
+.|.+.|.++.+ |..+...+...|+.+...++-+..... | -++.-..+|.+.|++++|++++.+
T Consensus 698 ~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 698 KLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998753 233444444566666655554444432 2 123334455566666666666555
Q ss_pred C
Q 036704 538 M 538 (634)
Q Consensus 538 ~ 538 (634)
+
T Consensus 762 ~ 762 (814)
T 3mkq_A 762 S 762 (814)
T ss_dssp T
T ss_pred c
Confidence 4
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.12 E-value=1.1 Score=37.00 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=54.0
Q ss_pred HhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 036704 420 YVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLY 499 (634)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 499 (634)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3455666666666666666666666665442 122333344455555544443
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036704 500 RIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA 539 (634)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 539 (634)
+....+ | -++.-...+.-.|+++++.+++.+.+
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333322 1 13333444455666666666666654
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.90 E-value=0.98 Score=35.07 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Q 036704 442 VSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGI 508 (634)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 508 (634)
.....-+..+..+|+-++-.+++..+... -+|++...-.+..+|.+.|+..+|.+++.++-++ |+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 34455556666666666666666664332 2556666666666666666666666666666554 44
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.89 E-value=0.2 Score=39.84 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHhcccCCH------HHHHHHHHHHHHHhCCCCChh-HHHHHH------HHHHhcCChHHHHHHHHhC--C
Q 036704 475 NHVTLVGVLTACSHVGLV------EEGLQLYRIMQNEYGIIPTRE-RRSCVV------DLLARAGRVHEAEDFINQM--A 539 (634)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~------~~~~~~g~~~~A~~~~~~~--~ 539 (634)
|..+|-..+....+.|++ ++...+|+++.. .++|+.. .+...| ..+...++.++|.++|+.+ -
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 578888888888888888 888888888886 4566431 111111 1223447888888888877 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 036704 540 FDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLC 585 (634)
Q Consensus 540 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 585 (634)
.+.-...|......-.+.|+.+.|.+++.+++...|.+...+...+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 1112667777777777888888888888888888887666555444
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.28 Score=51.34 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.+..-...|...|+++.|+.+.+++....|.+-.+|..|+.+|.+.|+++.|+-.+..+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344445667889999999999999999999999999999999999999999999998874
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.76 E-value=1.1 Score=37.13 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=87.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036704 448 IVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGR 527 (634)
Q Consensus 448 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 527 (634)
.......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34456778888888887665 4788888998888888999988888887752 4556666677787
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-hcCChHHHHHHHHHH
Q 036704 528 VHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYA-SSGKWEEVARLMGSM 604 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 604 (634)
.+.-.++-+......+ ++.....+...|+++++.+++.+.-. +. .+..++ ..|-.+.|.++.+.+
T Consensus 76 ~e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r--------~~-eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS--------LP-LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC--------HH-HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC--------hH-HHHHHHHHcCcHHHHHHHHHHh
Confidence 7766655544422222 34455567788999999999876432 11 222222 357778888888765
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.58 E-value=0.12 Score=39.98 Aligned_cols=81 Identities=10% Similarity=-0.046 Sum_probs=63.3
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCChHHHHH
Q 036704 527 RVHEAEDFINQM--AFDDDIVVWKSLLASCKTHGNVDV---GKRAAENILKID-P-TNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 527 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
.+..+.+.|.+. ...++..+-..+.+++.+..+... ++.+++.+.... | ......+.|+-++.+.|+|++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344455555544 224788888889999988876655 999999998876 5 466678889999999999999999
Q ss_pred HHHHHHhC
Q 036704 600 LMGSMKER 607 (634)
Q Consensus 600 ~~~~~~~~ 607 (634)
+++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999863
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.55 E-value=0.065 Score=48.37 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh-cCC
Q 036704 492 VEEGLQLYRIMQNEYGIIPT---RERRSCVVDLLAR-----AGRVHEAEDFINQM-AFDD--DIVVWKSLLASCKT-HGN 559 (634)
Q Consensus 492 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~-~g~ 559 (634)
...|...++++.+ +.|+ ...+..+...|.+ -|+.++|.+.|++. .+.| +..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3444555555542 3454 3455566666666 37777777777766 4444 25555566666655 377
Q ss_pred HHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 560 VDVGKRAAENILKIDPTN-SAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 560 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
.+++.+.+++++...|.. +. ..+ ...+.-++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~l----an~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKL----LVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHH----HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhH----HHHHHHHHHHHHHHHhH
Confidence 788888888877766652 22 112 22233356666665543
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.41 E-value=0.43 Score=37.94 Aligned_cols=97 Identities=6% Similarity=0.167 Sum_probs=47.8
Q ss_pred CChhhHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCH----HHHHHHHHH---hcccCCHHHHHHHHHHHHHH
Q 036704 439 PDVVSWSSLIVGYAQFGCG------EEALKLFRRMRSSGVRPNH----VTLVGVLTA---CSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 439 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~----~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~ 505 (634)
.|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|-.+--- +...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445555555555555666 5555666655553 34431 112211111 11235566666666666543
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 506 YGIIPTRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 506 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.-.- ..+|......-.+.|++..|.+++.+.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 444444445555666666666666555
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.29 E-value=0.95 Score=35.69 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=57.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 036704 507 GIIPTRERRSCVVDLLARAGRV---HEAEDFINQM-AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAA 580 (634)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 580 (634)
+-.|+..+--.+..++.+..+. .+++.+++.+ ...| ....+-.+.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 3356777766777888887754 4677777777 3334 34466677778899999999999999999999988766
Q ss_pred HHHH
Q 036704 581 LVLL 584 (634)
Q Consensus 581 ~~~l 584 (634)
...-
T Consensus 114 ~~Lk 117 (144)
T 1y8m_A 114 GALK 117 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.45 E-value=0.34 Score=46.90 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 548 KSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 548 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
..++..+...|++++++..++.+...+|-+...+..++.+|.+.|+..+|++.|+++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666666666666666666554
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.33 E-value=0.46 Score=36.90 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 036704 509 IPTRERRSCVVDLLARAGRV---HEAEDFINQM-AFDD--DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALV 582 (634)
Q Consensus 509 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 582 (634)
.|+..+--.+..++.+..+. .+++.+++++ ...| ....+-.+.-++.+.|++++|.+..+.+++..|.+..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45666655666777776644 4567777766 3334 2456667777788888888888888888888888776555
Q ss_pred HH
Q 036704 583 LL 584 (634)
Q Consensus 583 ~l 584 (634)
..
T Consensus 117 Lk 118 (134)
T 3o48_A 117 LK 118 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.24 E-value=2.7 Score=33.10 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 541 DDDIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPT-NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
.|+..+--.+.+++.+..+ ..+++.+++.+....|. .....+.++-++.+.|+|++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566666666666666553 34667777777766663 444556666677777777777777777765
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.61 E-value=1.7 Score=33.71 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 542 DDIVVWKSLLASCKTHGN---VDVGKRAAENILKIDPT-NSAALVLLCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 542 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
|++.+--.+.+++.+..+ ..+++.+++.+.+..|. ....+..++.++.+.|++++|.++.+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444555555555554443 23555555555555552 344455555556666666666666655554
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.56 E-value=1.8 Score=35.20 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=61.4
Q ss_pred CCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC--
Q 036704 470 SGVRPNH--VTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR-------ERRSCVVDLLARAGRVHEAEDFINQM-- 538 (634)
Q Consensus 470 ~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 538 (634)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455542 334444566666777777777766655433333432 23445566666777777777766664
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 539 --AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMK 605 (634)
Q Consensus 539 --~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (634)
..-+ .......+. ....... -. ..+.+...-+.++.+|.+.|++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC--------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCcccccc----ccCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1111 110100000 0000000 00 012233566779999999999999999998654
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.48 E-value=17 Score=39.04 Aligned_cols=250 Identities=9% Similarity=0.007 Sum_probs=128.8
Q ss_pred HHhcCCCChHHHHHHHHHHHHhCCCCChh-HHhHHH------hcCHhHHHHHHHHHHHCCC--C-----CCHhHHH--HH
Q 036704 318 CACTSPLSLYQGMQIHSYIIKKGFYSNVP-VCNAIL------QHQAGELFRLFSLMLASQT--K-----PDHITFN--DV 381 (634)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll------~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~--~l 381 (634)
-+....|+.+++..+++.....+...+.. -..+++ .+..+++..++.......- . +....-. .|
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888877776554322111221 222222 2233467777766554321 0 1111111 22
Q ss_pred HHHhhccccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHhhcCChHHHHHHHhcCCC-CChhhH--HHHHHHHHhcCC
Q 036704 382 MGACAAMASLEMGTQLHCYIMKTGLALDVF--VMNGLMDMYVKCGSLGSARELFNFMED-PDVVSW--SSLIVGYAQFGC 456 (634)
Q Consensus 382 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~l~~~~~~~~~ 456 (634)
--++...++- ++.+.+..+....-. ... .--++...+.-.|+-+-...++..+.+ .+.... -.+.-++...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2233334443 444555555443211 111 112233345556777766777665432 222222 333344557788
Q ss_pred hHHHHHHHHHHHhCCCCCCHHH--HHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036704 457 GEEALKLFRRMRSSGVRPNHVT--LVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDF 534 (634)
Q Consensus 457 ~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 534 (634)
.+.+..+.+.+.... .|.... -..+..+|+..|+.....+++..+... ...++.-...+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 898988888888642 222222 223455788899988888899988753 233333333344445557777777777
Q ss_pred HHhCCCCCCHHHHHHHHHH--HHhcCCH-HHHHHHHHHHHh
Q 036704 535 INQMAFDDDIVVWKSLLAS--CKTHGNV-DVGKRAAENILK 572 (634)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~~--~~~~g~~-~~a~~~~~~~~~ 572 (634)
++.+....|+.+-.....+ ....|+. .+++..+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7766333344444333333 3334443 677777777754
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.07 E-value=2.8 Score=30.56 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=48.0
Q ss_pred ChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 527 RVHEAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 527 ~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+.-+..+-++.+ ...|++.+..+.+++|.+.+|+..|.++++.+.....+...+|..+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344455555554 678999999999999999999999999999999877666677777754
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.03 E-value=7.4 Score=35.79 Aligned_cols=167 Identities=11% Similarity=0.008 Sum_probs=105.4
Q ss_pred chhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHh
Q 036704 116 VLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIEL----YVQMLQSGLMPDQFTFGSIIRAC 191 (634)
Q Consensus 116 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~ 191 (634)
..|.++..-|.+++++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556677778888999999998754 34456677887776665 55556778999998888888877
Q ss_pred hcCCCch-hHhHHHHHHHH----hc--CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHH
Q 036704 192 SGLCCVG-LGRQLHAHVIK----SE--HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFAR 264 (634)
Q Consensus 192 ~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ 264 (634)
......+ .-.++.+.+++ .| ..-|+..+..+...|.+.|++.+|+..|-.-...++..+..++..+..
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~----- 177 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC----- 177 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH-----
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH-----
Confidence 6644222 23344444443 33 224678899999999999999999998863332244444444433321
Q ss_pred HHHhcCCCCChhhH----HHHHHHHHcCCChhHHHHHHHHHh
Q 036704 265 TVFNEMESPNLASW----NTIIAGVASCSNANEAMSLFSEMG 302 (634)
Q Consensus 265 ~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 302 (634)
..+....... .-.+--|...|+...|..+|+...
T Consensus 178 ----~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 178 ----QVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp ----HTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred ----hcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1100111111 112234556788888888887654
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.90 E-value=9.6 Score=36.48 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhcCC
Q 036704 411 FVMNGLMDMYVKCGSLGSARELFNFME 437 (634)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 437 (634)
.....+...|.+.|+.++...++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566777777777777777776654
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.21 E-value=2.1 Score=34.84 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=12.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 036704 517 CVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
.+..+|.+.+++++|+.+++.+
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHhcC
Confidence 3455555566666666665555
No 251
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.81 E-value=6.6 Score=33.12 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=28.9
Q ss_pred cCChHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036704 525 AGRVHEAEDFINQM---AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKI 573 (634)
Q Consensus 525 ~g~~~~A~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 573 (634)
.++..++.++|.-| ++.- -...|...+..+...|++++|.++|+..++.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34455666666655 2222 3556666666666667777777777766653
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.44 E-value=7.3 Score=30.17 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=46.1
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 036704 530 EAEDFINQM---AFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCN 586 (634)
Q Consensus 530 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 586 (634)
+..+-++.+ ..-|++.+..+.+++|.+.+|+..|.++++-+.....+...+|..+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344444443 778999999999999999999999999999999877666777877754
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.31 E-value=1.7 Score=38.55 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=42.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 036704 520 DLLARAGRVHEAEDFINQM-AFDD-DIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNS 578 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 578 (634)
..+.+.|++++|++....- +..| |...-..+++.++-.|++++|..-++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3456778888888776655 4444 666777777888888888888888888888888643
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.11 E-value=4.4 Score=29.54 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 456 CGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
|.=+..+-++.+....+.|++......+++|.+.+++..|.++++-++.+- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344566777777777888999999999999999999999999998888653 333456666654
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.06 E-value=33 Score=35.19 Aligned_cols=405 Identities=8% Similarity=-0.066 Sum_probs=193.3
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHc-CCCCCcchhhHHHHHHHccCCh
Q 036704 53 SLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSS-KCQPDAVLHNHILNMYGKCGSL 131 (634)
Q Consensus 53 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 131 (634)
...+.|++..+..+...+... .+.|-. .|..+...+. ....++...+++ +. +.+.....-..-+..+.+.+++
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~~-pL~~yl-~y~~l~~~l~-~~~~~ev~~Fl~---~~~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKDY-PLYPYL-EYRQITDDLM-NQPAVTVTNFVR---ANPTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTTS-TTHHHH-HHHHHHHTGG-GCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhhcCC-CcHHHH-HHHHHHhCcc-cCCHHHHHHHHH---HCCCChhHHHHHHHHHHHHHhCCCH
Confidence 355667777776666555322 121111 3333332221 112333333332 22 2222223334556667778888
Q ss_pred HHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhc
Q 036704 132 EDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSE 211 (634)
Q Consensus 132 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (634)
......+.. ...+...--....+....|+..+|....+.+=..|- .....+..++..+...|.+...
T Consensus 89 ~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~----------- 155 (618)
T 1qsa_A 89 RGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPL----------- 155 (618)
T ss_dssp HHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHH-----------
T ss_pred HHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHH-----------
Confidence 888887776 323333333455667777887777777776655542 3334455555555444433221
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChh---hHHHHHHHHHcC
Q 036704 212 HGSHLISQNALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLA---SWNTIIAGVASC 288 (634)
Q Consensus 212 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~ 288 (634)
.. -.-+......|+...|..+...+..........++....+............ ++.. .+..-+.-+.+
T Consensus 156 -----~~-~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 156 -----AY-LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTG-ATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp -----HH-HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-
T ss_pred -----HH-HHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccC-CChhhHHHHHHHHHHHHh-
Confidence 11 2223445566777777777766632221222334433344444444443322 2222 12222333333
Q ss_pred CChhHHHHHHHHHhhCC-CCCCHh--HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCCh---hHHhHHHhcCHhHHHHH
Q 036704 289 SNANEAMSLFSEMGDRE-LIPDGL--TVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNV---PVCNAILQHQAGELFRL 362 (634)
Q Consensus 289 g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~a~~~ 362 (634)
.+.+.|..++......+ ..+... ....+.......+...++...+..........+. ....++..+++..|...
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 37789999998876433 222221 2233344455555344555555554333221111 12223334588888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChh
Q 036704 363 FSLMLASQTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVV 442 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 442 (634)
|..|..... ....-.-=+.+++...|+.++|..+|..+... . ..|..+. ..+.|..-.. .. .........
T Consensus 308 ~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA--a~~Lg~~~~~-~~-~~~~~~~~~ 377 (618)
T 1qsa_A 308 LARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA--AQRIGEEYEL-KI-DKAPQNVDS 377 (618)
T ss_dssp HHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH--HHHTTCCCCC-CC-CCCCSCCCC
T ss_pred HHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH--HHHcCCCCCC-CC-CCCChhHHh
Confidence 888755321 12222233445667788888898888888642 1 2233322 1222211000 00 000000000
Q ss_pred -----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 036704 443 -----SWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQ 497 (634)
Q Consensus 443 -----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 497 (634)
.-..-+..+...|....|...|..+.+. . +......+.......|.++.++.
T Consensus 378 ~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHH
Confidence 1112244566778888888777777654 1 22223333333444555555543
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.64 E-value=11 Score=39.52 Aligned_cols=52 Identities=15% Similarity=0.006 Sum_probs=28.4
Q ss_pred hcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036704 486 CSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA 539 (634)
Q Consensus 486 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 539 (634)
|...|+++.|+++-++.... .+.+..+|..|..+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33455666666665555531 22235556666666666666666666666554
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.45 E-value=27 Score=39.23 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=25.6
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCC
Q 036704 381 VMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFME 437 (634)
Q Consensus 381 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 437 (634)
++..+...+..+.+.++... .+.++...-.+..++...|++++|...|.+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44444444554444443322 12233333344556666777777777776553
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.26 E-value=6.4 Score=28.52 Aligned_cols=87 Identities=13% Similarity=0.065 Sum_probs=63.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHH
Q 036704 94 RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQML 173 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 173 (634)
...++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+..+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456778888877776653 33333344556788999999999999999999998887754 47788888888887887
Q ss_pred HCCCCCChhhHH
Q 036704 174 QSGLMPDQFTFG 185 (634)
Q Consensus 174 ~~g~~p~~~~~~ 185 (634)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 35554453
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.22 E-value=7.8 Score=43.58 Aligned_cols=120 Identities=12% Similarity=-0.035 Sum_probs=66.0
Q ss_pred hhHHHHHHHccCChHHHHHHhccC----CCCC----ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 036704 118 HNHILNMYGKCGSLEDARMVFDEM----PQRN----VVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIR 189 (634)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 189 (634)
|..++..+.+.+.++.+.++-... .+.+ ...|..+...+...|++++|...+-.+..... -...+..++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 556666676777666665544322 1111 12467777777778888888777777765433 2344555555
Q ss_pred HhhcCCCch------------hHhHHHHHHHHhc--CCCChhHHHHHHHHHHhcCChhHHHHHH
Q 036704 190 ACSGLCCVG------------LGRQLHAHVIKSE--HGSHLISQNALIAMYTKFDRILDAWNVF 239 (634)
Q Consensus 190 ~~~~~~~~~------------~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 239 (634)
.++..+..+ ++.+++..-.+.. +...+..|..|=.-+...|++.+|-.++
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 555444333 3344443322221 2222344566666666777777766554
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.69 E-value=10 Score=33.66 Aligned_cols=52 Identities=12% Similarity=-0.045 Sum_probs=27.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036704 451 YAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQ 503 (634)
Q Consensus 451 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 503 (634)
..+.|+.+++++....-++.. +-|...-..++..+|-.|++++|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555555655555555542 2234444445555555666666655555554
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.53 E-value=32 Score=33.69 Aligned_cols=185 Identities=10% Similarity=0.053 Sum_probs=102.2
Q ss_pred hcCHhHHHHHHHHHHHC-----CCCCCHhHHHHHHHHhhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH----Hhhc
Q 036704 353 QHQAGELFRLFSLMLAS-----QTKPDHITFNDVMGACAAMASLEMGTQLHCYIMKTGLALDVFVMNGLMDM----YVKC 423 (634)
Q Consensus 353 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 423 (634)
+++++.|++.+..+.+. ...........++..|...++++...+.+..+.+..... ......++.. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 45677777776665542 234455667778888888888888877776665433222 2222233322 2222
Q ss_pred CC--hHHHHHHHhcCCC---CC--h-----hhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHh
Q 036704 424 GS--LGSARELFNFMED---PD--V-----VSWSSLIVGYAQFGCGEEALKLFRRMRSS--GVRPN---HVTLVGVLTAC 486 (634)
Q Consensus 424 g~--~~~A~~~~~~~~~---~~--~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~ 486 (634)
.. .+.-..+.+.+.. .- . .....|...|...|++.+|..++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22 2223334443331 11 1 12345667777788888888888776532 21111 23455566777
Q ss_pred cccCCHHHHHHHHHHHHHHh-CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 487 SHVGLVEEGLQLYRIMQNEY-GIIPT----RERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 487 ~~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
...+++.+|..++.++.... ...++ ...+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 77778888877777764321 12222 233455566666677777776655444
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.39 E-value=7.1 Score=37.56 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHH----HhCCCCChhHH
Q 036704 444 WSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQN----EYGIIPTRERR 515 (634)
Q Consensus 444 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 515 (634)
...++..+...|+++++...+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666777788888888777777653 33667788888888888888888888776543 34777776654
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.75 E-value=6.9 Score=28.41 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=60.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHH
Q 036704 94 RSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQML 173 (634)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 173 (634)
...++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++..-+..+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 356777777777776653 333333445567789999999999999888998888877543 6677777777777777
Q ss_pred HCCCCCChhhHH
Q 036704 174 QSGLMPDQFTFG 185 (634)
Q Consensus 174 ~~g~~p~~~~~~ 185 (634)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 35444443
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.37 E-value=12 Score=27.15 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036704 390 SLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRS 469 (634)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 469 (634)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46667666666665553 22222222456778899999999999998999998887754 367878888888878887
Q ss_pred CCCCCCHHHHHH
Q 036704 470 SGVRPNHVTLVG 481 (634)
Q Consensus 470 ~~~~p~~~~~~~ 481 (634)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555443
No 265
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.13 E-value=12 Score=29.88 Aligned_cols=49 Identities=8% Similarity=0.084 Sum_probs=30.4
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 036704 563 GKRAAENILK--IDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERGVRK 611 (634)
Q Consensus 563 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 611 (634)
+..+|+.+.. +.-..+..|...+..+...|++++|.++++.-.+.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666554 444556666666666777777777777776666555433
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.11 E-value=36 Score=32.51 Aligned_cols=164 Identities=10% Similarity=-0.011 Sum_probs=97.4
Q ss_pred HhHHHHHHHHhhccccHHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHhhcCC-hHHHHHHHhcCCC---CChhhH--
Q 036704 375 HITFNDVMGACAAMASLEMGTQLHCYIMKT-GLAL---DVFVMNGLMDMYVKCGS-LGSARELFNFMED---PDVVSW-- 444 (634)
Q Consensus 375 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~-- 444 (634)
......+...|.+.|+.++..+++...... +.-+ .......+++.+....+ .+.-.++.....+ .+-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999998888876521 1111 23455667777765432 3333333333321 222233
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-CCCCChhH
Q 036704 445 ----SSLIVGYAQFGCGEEALKLFRRMRSSGVRPN-----HVTLVGVLTACSHVGLVEEGLQLYRIMQNEY-GIIPTRER 514 (634)
Q Consensus 445 ----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 514 (634)
..++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+....... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2467778888888888888888766422222 2335555667778888888888887776442 22244333
Q ss_pred HHH----HHHHHH-hcCChHHHHHHHHhC
Q 036704 515 RSC----VVDLLA-RAGRVHEAEDFINQM 538 (634)
Q Consensus 515 ~~~----l~~~~~-~~g~~~~A~~~~~~~ 538 (634)
... -...+. ..+++.+|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 221 123334 677888887776554
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.67 E-value=13 Score=27.04 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMR 468 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 468 (634)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 346667666666665553 222222224567788999999999999999999988877543 6677788888887887
Q ss_pred hCCCCCCHHHHH
Q 036704 469 SSGVRPNHVTLV 480 (634)
Q Consensus 469 ~~~~~p~~~~~~ 480 (634)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 55555543
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.66 E-value=35 Score=31.35 Aligned_cols=130 Identities=11% Similarity=0.068 Sum_probs=73.2
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccc-----cHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHhhcCChHHHHHHH
Q 036704 361 RLFSLMLASQTKPDHITFNDVMGACAAMA-----SLEMGTQLHCYIMKTGL--ALDVFVMNGLMDMYVKCGSLGSARELF 433 (634)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (634)
-+++...+.+++++......++..+.... +..-..+....-.+.|- .-++.....+...|.+.|++.+|...|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 34445555666777766666666654422 12222333333334432 247788899999999999999999977
Q ss_pred hcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 434 NFMEDPDVVSWSSLIVGYAQF---GCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 434 ~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
-.....+...+..++.-.... |...++ +...-..++. |...|+...|..+++...+.
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 643322444444444333332 322221 1122222333 44568899999988877654
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.77 E-value=11 Score=29.27 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036704 458 EEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVD 520 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 520 (634)
=+..+-++.+....+.|++......+.+|-+.+|+..|.++++-++.+ ..+...+|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 345666677777788899999999999999999999999999988875 3444556766654
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.59 E-value=14 Score=36.06 Aligned_cols=60 Identities=5% Similarity=-0.035 Sum_probs=26.4
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036704 478 TLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP--TRERRSCVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 478 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
+...+...|.+.|+++.|.+.+.++... -..+ -...+-.++..+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344444455555555555555554432 1111 1233334444444444555444444443
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=77.54 E-value=18 Score=29.41 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 544 IVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
+..|...+..+...|++.+|.++|+..++
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555555
No 272
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.42 E-value=56 Score=31.93 Aligned_cols=184 Identities=10% Similarity=0.054 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHH----hcCC
Q 036704 389 ASLEMGTQLHCYIMKT-----GLALDVFVMNGLMDMYVKCGSLGSARELFNFMEDP---DVVSWSSLIVGYA----QFGC 456 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~----~~~~ 456 (634)
|+++.|.+.+-.+.+. +...+......++..+...|+++...+.+..+.+. -......+++.+. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6677777766555532 23445666777788888888888776666544321 1122233333322 2232
Q ss_pred hHH--HHHHHHHHHh--CC-CCC---CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-CCCCC---hhHHHHHHHHHHh
Q 036704 457 GEE--ALKLFRRMRS--SG-VRP---NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEY-GIIPT---RERRSCVVDLLAR 524 (634)
Q Consensus 457 ~~~--a~~~~~~m~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~ 524 (634)
.+. -..+.+.+.. .| +.. .......|...+...|++.+|..++..+.... +.... ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 222 1222222111 11 111 12334566777788888888888888776542 22221 3456667788888
Q ss_pred cCChHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 525 AGRVHEAEDFINQM-----AFDDD----IVVWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 525 ~g~~~~A~~~~~~~-----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
.+++..|..+++++ ...++ ...+...+..+...+++.+|.+.|.++.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888888877765 22222 23445566666677777777776666543
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.70 E-value=34 Score=29.03 Aligned_cols=147 Identities=12% Similarity=0.024 Sum_probs=78.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHcc
Q 036704 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKC 128 (634)
Q Consensus 49 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (634)
..+..+.+.+.. .+...+..+.. .++...-...+.+++..++.+.. ..+..+.. .++..+-...+.++.+.
T Consensus 38 ~A~~~L~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 38 AAAYALGKIGDE-RAVEPLIKALK----DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQI 108 (211)
T ss_dssp HHHHHHHHHCCG-GGHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCc-cHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 445556666653 33444433433 24555566666667666654333 33333332 45666666777777777
Q ss_pred CChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHH
Q 036704 129 GSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVI 208 (634)
Q Consensus 129 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (634)
++.+....+.+.+..++...-...+.++.+.|+.+ +...+..+.. .++...-...+.++.+.+. ..+...+..+.
T Consensus 109 ~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 109 GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 77655555555555566666566666666666543 3344444443 2555555555666665554 33444444444
Q ss_pred H
Q 036704 209 K 209 (634)
Q Consensus 209 ~ 209 (634)
+
T Consensus 184 ~ 184 (211)
T 3ltm_A 184 E 184 (211)
T ss_dssp H
T ss_pred h
Confidence 3
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.64 E-value=54 Score=30.36 Aligned_cols=170 Identities=13% Similarity=0.062 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCCChhHHhHHHhcCHh
Q 036704 278 WNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPLSLYQGMQIHSYIIKKGFYSNVPVCNAILQHQAG 357 (634)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 357 (634)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~D-------------------------- 76 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGD-------------------------- 76 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHH--------------------------
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHH--------------------------
Confidence 44566678888888888887765321 1122233332222
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhcccc--HHHHHHHHHHH----HHhC--CCCchhHHHHHHHHHhhcCChHHH
Q 036704 358 ELFRLFSLMLASQTKPDHITFNDVMGACAAMAS--LEMGTQLHCYI----MKTG--LALDVFVMNGLMDMYVKCGSLGSA 429 (634)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 429 (634)
-+.-+++...+.++++|......++..+..... ++. ..+.+.+ .+.| ..-++.....+...|.+.+++.+|
T Consensus 77 L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 77 LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 233333444555566666666666666554432 111 2233333 3434 344778888899999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 036704 430 RELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQN 504 (634)
Q Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 504 (634)
...|-.-.+++...+..++..+...+... .++...-..++. |...++...|..+++...+
T Consensus 156 e~H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 156 EKHLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 99885433344455544444333332211 112223333343 4456788888887766654
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.94 E-value=36 Score=33.14 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHH--H
Q 036704 412 VMNGLMDMYVKCGSLGSARELFNFMED------PDVVSWSSLIVGYAQFGCGEEALKLFRRMRS---SGVRPNHVTL--V 480 (634)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~--~ 480 (634)
+...+...|.+.|+++.|.+.+.++.+ .-...+-..++.+...+++..+...+.++.. .+..|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456677788888888888888887752 2233566677777788888888888777643 2222222211 1
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHH
Q 036704 481 GVLTACSHVGLVEEGLQLYRIMQNE 505 (634)
Q Consensus 481 ~l~~~~~~~g~~~~a~~~~~~~~~~ 505 (634)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1222344567788877777776654
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.89 E-value=63 Score=29.92 Aligned_cols=167 Identities=13% Similarity=0.104 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH----HHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 036704 412 VMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEA----LKLFRRMRSSGVRPNHVTLVGVLTACS 487 (634)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~m~~~~~~p~~~~~~~l~~~~~ 487 (634)
+|.++..-|.+.+++++|.+++-.- ...+.+.|+...| .-+++-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455566678888999888875431 2334555655444 334466667777888877777777666
Q ss_pred ccCC--HHHHHHHHHHHH---HHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036704 488 HVGL--VEEGLQLYRIMQ---NEYGI--IPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNV 560 (634)
Q Consensus 488 ~~g~--~~~a~~~~~~~~---~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 560 (634)
.... ++. ..+.+++. .+.|- .-|+.....+...|.+.+++.+|..-|- .+..+.+..+-.++..+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 5442 221 22222222 11242 2367777888899999999999988874 3444444566555544433332
Q ss_pred HHHHHHHHHHHhcCCCCchhHHH-HHHHHHhcCChHHHHHHHHHHHh
Q 036704 561 DVGKRAAENILKIDPTNSAALVL-LCNIYASSGKWEEVARLMGSMKE 606 (634)
Q Consensus 561 ~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 606 (634)
|.+...|.. .+--|.-.++...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222333322 22236678899999887766654
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.63 E-value=1.1e+02 Score=31.67 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcC
Q 036704 276 ASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTS 322 (634)
Q Consensus 276 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 322 (634)
.+| .+|-.+.++|++++|.++.++.... ..--...+...+..++.
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 345 4667788999999999888765432 11112355555666653
No 278
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=66.14 E-value=52 Score=31.93 Aligned_cols=141 Identities=12% Similarity=-0.031 Sum_probs=93.6
Q ss_pred cCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHH
Q 036704 25 CMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHD 104 (634)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (634)
..+.+-|.++..+.-=|..+.....-+..+..+|++++|..+--...+ |+--++.|.+.+-.+=...|...-.+.+|.
T Consensus 342 l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 342 LQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp TCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 477888888887766665554433567889999999999998887765 455566677666666666788888999999
Q ss_pred HHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHH
Q 036704 105 HILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWTAMIAGCSQNGQENAAIELYVQM 172 (634)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 172 (634)
.+.+.| ..+..--..+++....+|+.+-..+++.+=+- +++-=+.-+.+..+..-|+.+|.+.
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL----~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKL----ECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCS----CCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCc----cccHHhHhhhhhcCHHHHHHHHHHc
Confidence 999888 55655555666776777777777777655321 1111122222344555555555443
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.28 E-value=25 Score=30.21 Aligned_cols=75 Identities=5% Similarity=0.067 Sum_probs=41.6
Q ss_pred HHHHHHHHHh----CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 497 QLYRIMQNEY----GIIPTRERRSCVVDLLARAGRVHEAEDFINQM---AFDD-DIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 497 ~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
.++++..+.+ .+.-|.......+...-.+. ++.++|.-| ++.- -...|......+...|++++|.++|+
T Consensus 98 ~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~---~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 98 TLLERCTREFVRNPLYKDDVRYLRIWMQYVNYID---EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCS---CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHccC---CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555432 23335444443333222233 444455544 3332 45677777777778888888888888
Q ss_pred HHHhcC
Q 036704 569 NILKID 574 (634)
Q Consensus 569 ~~~~~~ 574 (634)
..++..
T Consensus 175 ~Gi~~~ 180 (223)
T 4aez_C 175 KGKRMK 180 (223)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 877643
No 280
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.86 E-value=91 Score=26.20 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSH 488 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 488 (634)
+...-...+..+.+.+..+....+.+.+.+++...-...+.++...++.+ +...+.++.. .++...-...+.++.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 44444444455555555444444445555555555555555666655532 3333333332 3455555556666666
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036704 489 VGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAE 568 (634)
Q Consensus 489 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 568 (634)
.++.+. ...+..+. -.++..+-...+.++.+.|..+ +...+..+-..++..+-...+.++...++ .++...+.
T Consensus 108 ~~~~~~-~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 108 IGDERA-VEPLIKAL----KDEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HCCGGG-HHHHHHHT----TCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred hCcHHH-HHHHHHHH----hCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 665432 22333332 2455556566666666666543 34444444335666666677777776665 44555555
Q ss_pred HHHh
Q 036704 569 NILK 572 (634)
Q Consensus 569 ~~~~ 572 (634)
.+++
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.93 E-value=96 Score=26.15 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 455 GCGEEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 455 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
+...++..+|..|..+|+--. ...|......+...|++++|.++|+.-.+. +-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 335677777777777765544 455666667777777777777777777665 5455
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.57 E-value=93 Score=25.88 Aligned_cols=164 Identities=14% Similarity=0.029 Sum_probs=76.7
Q ss_pred HHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCHHH
Q 036704 415 GLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRPNHVTLVGVLTACSHVGLVEE 494 (634)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 494 (634)
..+.++.+.+..+....+.+.+.+++...-...+.++...++.+ +...+..+.. .++...-...+.++.+.++.+.
T Consensus 33 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~ 108 (201)
T 3ltj_A 33 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERA 108 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH
Confidence 33334444444333334444444455444444445555555432 2233333332 3455555555555555555432
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036704 495 GLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKID 574 (634)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 574 (634)
. ..+..+. -.++..+-...+.++.+.++.+ +...+..+-..++..+-...+.++...|+ +++...+..+++.
T Consensus 109 ~-~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d- 180 (201)
T 3ltj_A 109 V-EPLIKAL----KDEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET- 180 (201)
T ss_dssp H-HHHHHHT----TCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH-
T ss_pred H-HHHHHHH----cCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC-
Confidence 2 2222222 1345555555566666666543 33334443234566666666677666665 3455555555532
Q ss_pred CCCchhHHHHHHHHHhc
Q 036704 575 PTNSAALVLLCNIYASS 591 (634)
Q Consensus 575 p~~~~~~~~l~~~~~~~ 591 (634)
+ ++..-.....++.+.
T Consensus 181 ~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 181 G-TGFARKVAVNYLETH 196 (201)
T ss_dssp C-CHHHHHHHHHHHHHC
T ss_pred C-CHHHHHHHHHHHHHH
Confidence 2 333444444444443
No 283
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=53.52 E-value=1.4e+02 Score=27.45 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=44.8
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 535 INQMAFDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 535 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
|...+.+|. ..++...+....+.+++..|..+.+++++..|... ..++|.+++....+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 444466663 45778888889999999999999999999998522 3356777777776543
No 284
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.39 E-value=97 Score=25.76 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 036704 409 DVFVMNGLMDMYVKCGSLGSARELFNFMEDPDVVSWSSLIVGYAQFGC 456 (634)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 456 (634)
+...-...+.++.+.++.+....+.+.+.+++...-...+.++...++
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333333444444444444333334444444444444444444444444
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=53.24 E-value=72 Score=26.62 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=35.5
Q ss_pred hHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChH
Q 036704 528 VHEAEDFINQMAFDDDIV-------VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWE 595 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 595 (634)
++.|+.+|+.+...-+.. .-...+..|.+.|.+++|.+++++.....|.+...-.-|..+-.+..-+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H 168 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFH 168 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCc
Confidence 456677777763222211 12233455778888888888888877766655555555554444433333
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.67 E-value=49 Score=32.78 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC-h-----hHHH-HHHHHHHhcCChHHHHHHHHhC
Q 036704 476 HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT-R-----ERRS-CVVDLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-----~~~~-~l~~~~~~~g~~~~A~~~~~~~ 538 (634)
...++.+++.|...+.++.|..+..+.. ++.. . ..|. .+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456666677777777777777766553 1111 0 1111 2234455566777776666654
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.60 E-value=1.3e+02 Score=25.63 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=12.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 036704 50 LFSSLCKQNLYNEALVAFDFLQN 72 (634)
Q Consensus 50 ll~~~~~~~~~~~A~~~~~~~~~ 72 (634)
.+...+..|+.+-...+++.+.+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555666655555554443
No 288
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.84 E-value=1.8e+02 Score=26.48 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK--WEEVARLMGSMKERGV 609 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~ 609 (634)
....++.-|...||.++|.+.++++..-.-.+..+...+..++-+.++ .+....+++.+.+.|+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 344566667777777777777776642111112223333333433322 3345566666655554
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.27 E-value=1.7e+02 Score=26.03 Aligned_cols=17 Identities=0% Similarity=-0.027 Sum_probs=8.9
Q ss_pred HHHHHHhhCCCCCCHhH
Q 036704 296 SLFSEMGDRELIPDGLT 312 (634)
Q Consensus 296 ~~~~~m~~~g~~p~~~~ 312 (634)
++++.+.+.|..|+...
T Consensus 209 ~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 34444555666665543
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.61 E-value=47 Score=32.90 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036704 544 IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTN-------SAALVLLCNIYASSGKWEEVARLMGSMKER 607 (634)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (634)
...++.+++.|...+.++.|..+..+.. .|.+ ...++.++.++.-+++|.+|.+.+....++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3466666777777777777777777663 3322 234556677888888888888888776553
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.45 E-value=1.2e+02 Score=26.49 Aligned_cols=93 Identities=9% Similarity=-0.054 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCCcc-------cHHHHHHHhh--ccCChhHHHHHHHHHHHcC---------
Q 036704 49 DLFSSLCKQNLYNEALVAFDFLQNNTNFRIRPS-------TYADLISACS--SLRSLQLGRKVHDHILSSK--------- 110 (634)
Q Consensus 49 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~--------- 110 (634)
..+...++.|+.+....+++.+... +..++.. -.+.|..+.. +.|+.+-+..+++.-...+
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 4556667888888877777766665 4444422 2233443332 5677777777766543311
Q ss_pred C-CCCcchhhHHHHHHHccCChHHHHHHhccCCC
Q 036704 111 C-QPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ 143 (634)
Q Consensus 111 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 143 (634)
+ ..+..-.+. +...+..|+.+-+.-+++.-..
T Consensus 86 ~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 86 FRDVYYRGQTA-LHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp BCCSSEESBCH-HHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccccCCCCH-HHHHHHcCCHHHHHHHHhCCCC
Confidence 1 111133333 3444566888877777775443
No 292
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=42.33 E-value=83 Score=31.21 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 036704 559 NVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVAR 599 (634)
Q Consensus 559 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 599 (634)
.++.|...|.++....|.+...|+.|+.+....|+.-+|.-
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y 207 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHH
Confidence 34445555555555555555555555444444444444443
No 293
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=41.35 E-value=1.8e+02 Score=25.44 Aligned_cols=215 Identities=8% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCC---CCccchHHHHHHHHhCC
Q 036704 84 ADLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQ---RNVVSWTAMIAGCSQNG 160 (634)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 160 (634)
.+.+...++.|+.+....+++.-.......+..-++.|..+. ..|+.+-+..+++.-.. ++...++.|..+.....
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV-QMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS 84 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHH--HHHHHhhcCCCchhHhHHHHHHHHhcCCCC------------hhHHHHHHHHH
Q 036704 161 QENAAIELYVQMLQSGLMPDQFTFG--SIIRACSGLCCVGLGRQLHAHVIKSEHGSH------------LISQNALIAMY 226 (634)
Q Consensus 161 ~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~li~~~ 226 (634)
.++++.+.+.|..++..... +.+...+..|+ .++++.+.+.|..++ .......+...
T Consensus 85 -----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A 155 (285)
T 1wdy_A 85 -----VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155 (285)
T ss_dssp -----HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC----HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred -----HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC----HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHH
Q ss_pred HhcCChhHHHHHHhc-cCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCC
Q 036704 227 TKFDRILDAWNVFSS-IARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRE 305 (634)
Q Consensus 227 ~~~g~~~~A~~~~~~-~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 305 (634)
+..|+.+-+..+++. -...+. .+....+.+..+.. .++.....++++.+.+.|
T Consensus 156 ~~~~~~~~v~~Ll~~~~~~~~~-------------------------~~~~g~t~l~~a~~-~~~~~~~~~i~~~Ll~~g 209 (285)
T 1wdy_A 156 AEKGHVEVLKILLDEMGADVNA-------------------------CDNMGRNALIHALL-SSDDSDVEAITHLLLDHG 209 (285)
T ss_dssp HHHTCHHHHHHHHHTSCCCTTC-------------------------CCTTSCCHHHHHHH-CSCTTTHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHhcCCCCCc-------------------------cCCCCCCHHHHHHH-ccccchHHHHHHHHHHcC
Q ss_pred CCCCH--hHHHHHHHHhcCCCChHHHHHHHH
Q 036704 306 LIPDG--LTVRSLLCACTSPLSLYQGMQIHS 334 (634)
Q Consensus 306 ~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~ 334 (634)
..++. ..-.+.+...+..|+.+-+..+++
T Consensus 210 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.50 E-value=1.9e+02 Score=31.65 Aligned_cols=27 Identities=4% Similarity=-0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILK 572 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 572 (634)
-|..++..+.+.+-++-+.++.+.+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 456666666677777777777777665
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.63 E-value=2.5e+02 Score=26.27 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHH
Q 036704 413 MNGLMDMYVKCGSLGSARELFNFMEDPDVV---SWSSLIVGYAQFGC--GEEALKLFRRMRSSGVRPNHVT 478 (634)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 478 (634)
...++.-|...|+.++|.+.++++..|... ....+..++-+.++ .+....++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 466777788888999999999888766422 23334444444333 3456777777777765544333
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.32 E-value=94 Score=27.09 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=19.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhc
Q 036704 213 GSHLISQNALIAMYTKFDRILDAWNVFSS 241 (634)
Q Consensus 213 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (634)
.++.......+..+.+.|+-++|..+|=+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34445555666777888888888887744
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.13 E-value=1.2e+02 Score=23.31 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCC--hhHHHHH
Q 036704 220 NALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSN--ANEAMSL 297 (634)
Q Consensus 220 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~ 297 (634)
..++.-|...|+.++|.+.++++..+... .......+..++-+.+. .+.+..+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-------------------------~e~V~~~i~~alE~~~~~~~e~~~~L 65 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-------------------------HELVYEAIVMVLESTGESAFKMILDL 65 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-------------------------HHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-------------------------HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 45777888889999999999887643211 22333444455555432 3566777
Q ss_pred HHHHhhCCCCCCH
Q 036704 298 FSEMGDRELIPDG 310 (634)
Q Consensus 298 ~~~m~~~g~~p~~ 310 (634)
+..+...|+-+..
T Consensus 66 L~~L~~~~~is~~ 78 (129)
T 2nsz_A 66 LKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHTTCSCHH
T ss_pred HHHHHHCCCcCHH
Confidence 7777766654433
No 298
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.98 E-value=1.2e+02 Score=25.68 Aligned_cols=53 Identities=11% Similarity=0.281 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCh-h-----HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036704 492 VEEGLQLYRIMQNEYGIIPTR-E-----RRSCVVDLLARAGRVHEAEDFINQM-AFDDDI 544 (634)
Q Consensus 492 ~~~a~~~~~~~~~~~~~~~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 544 (634)
++.|+.+|+.+.+...+..+. . +-...+-.|.+.|.+++|.+++++. +..++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc
Confidence 456666666666552221111 0 1113445677888888888888887 444333
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.88 E-value=81 Score=25.52 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhhhcCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHc--CCCCCcchhhHHHHHHHccCChH
Q 036704 60 YNEALVAFDFLQNNTNFRIRPSTYADLISACSSLRSLQLGRKVHDHILSS--KCQPDAVLHNHILNMYGKCGSLE 132 (634)
Q Consensus 60 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 132 (634)
.+.+++-+....+..|.++++. -..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3555665655555447777554 355666777777888999999999887 76667777666777787777543
No 300
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=34.85 E-value=20 Score=26.23 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=27.2
Q ss_pred ccccchhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCC
Q 036704 13 RWCCEYWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNL 59 (634)
Q Consensus 13 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 59 (634)
..+..+.......|..+.|..+++.+.+.+...|--.++.++.+.|.
T Consensus 44 ~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~~~gWf~~fl~AL~~~g~ 90 (100)
T 2lwd_A 44 QECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 90 (100)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHhcCcCCcHHHHHHHHHHcCC
Confidence 34344444455667777777777776654445554455666665553
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.53 E-value=2.1e+02 Score=24.23 Aligned_cols=19 Identities=11% Similarity=-0.083 Sum_probs=12.6
Q ss_pred hhHHhhcCChHHHHHHhhc
Q 036704 19 WDAFELCMLLDQAGEVVDS 37 (634)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~ 37 (634)
.+.-.+.|+.+-...+++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~ 31 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNL 31 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4445567888777777763
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.29 E-value=1.8e+02 Score=23.23 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCC
Q 036704 458 EEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPT 511 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 511 (634)
+++..+|..|..+|+--. +..|......+...|++++|.++|+.-.+. +-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 337778888887776544 555677777777788888888888877765 55553
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.28 E-value=1.4e+02 Score=25.89 Aligned_cols=89 Identities=11% Similarity=-0.025 Sum_probs=49.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036704 446 SLIVGYAQFGCGEEALKLFRRMRSS--GVRP----NHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVV 519 (634)
Q Consensus 446 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 519 (634)
--+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~---~-~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL---S-SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH---T-CSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---h-cCCHHHHHHHH
Confidence 3467788888888888888876542 2222 11122222333333233333334444442 1 44455555666
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036704 520 DLLARAGRVHEAEDFINQM 538 (634)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~ 538 (634)
..+.+.|+-++|.++|-+.
T Consensus 99 ~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 7777888888888877665
No 304
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.65 E-value=3.1e+02 Score=25.61 Aligned_cols=64 Identities=11% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCC
Q 036704 546 VWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK--WEEVARLMGSMKERGV 609 (634)
Q Consensus 546 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~ 609 (634)
....++.-|...|+.++|.+.++++..-.-.+..+...+..++-+.++ .+...+++..+.+.|+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 345666677777777777777777642111122233334444444332 3446666666666554
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.98 E-value=2.3e+02 Score=24.30 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCC
Q 036704 458 EEALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIP 510 (634)
Q Consensus 458 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 510 (634)
+++..+|..|..+|+--. ...|......+...|++++|.++|+.-.+. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 456677777777765544 455666667777777777777777777765 5555
No 306
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.85 E-value=1.6e+02 Score=22.72 Aligned_cols=62 Identities=6% Similarity=0.080 Sum_probs=41.1
Q ss_pred HHHHCCCCCChhhHHHHHHHhhcCC-CchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 171 QMLQSGLMPDQFTFGSIIRACSGLC-CVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 171 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
.|++.|+.++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 45667777766544 3445555555 66778888888888877777766666677777766543
No 307
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.18 E-value=1.7e+02 Score=23.15 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=43.8
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhcCC-CchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 170 VQMLQSGLMPDQFTFGSIIRACSGLC-CVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 170 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
+.|.+.|+.++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 446677877776544 3445555555 66778999999988877777777666777777777544
No 308
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.14 E-value=1.8e+02 Score=22.88 Aligned_cols=63 Identities=3% Similarity=-0.028 Sum_probs=41.1
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 170 VQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 170 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
+.+.+.|+.++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 446677777665543 344444445566678888888887776667666666677777766543
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.70 E-value=1.7e+02 Score=23.13 Aligned_cols=64 Identities=8% Similarity=0.061 Sum_probs=42.0
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 036704 169 YVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 169 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
-+.+.+.|+.++..-. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3446677776655433 345555555667788899999988877777777666777777777543
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.32 E-value=2.2e+02 Score=23.21 Aligned_cols=13 Identities=8% Similarity=-0.048 Sum_probs=6.3
Q ss_pred hcCChHHHHHHhh
Q 036704 24 LCMLLDQAGEVVD 36 (634)
Q Consensus 24 ~~g~~~~A~~~~~ 36 (634)
..|+.+....++.
T Consensus 14 ~~g~~~~v~~ll~ 26 (201)
T 3hra_A 14 NQRDTKKVKEILQ 26 (201)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HhccHHHHHHHHH
Confidence 3455555555444
No 311
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.19 E-value=50 Score=23.93 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=17.0
Q ss_pred ChHHHHHHhhcccCCCCccchHHHHHHHHhcCC
Q 036704 27 LLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNL 59 (634)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 59 (634)
+.+.|.++++.++.+++..|. .++.++...|.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~-~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALP-LFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHH-HHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcChHHHH-HHHHHHHHcCc
Confidence 455555555555555555555 45555544343
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.42 E-value=99 Score=24.69 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCC--hhHHHHH
Q 036704 220 NALIAMYTKFDRILDAWNVFSSIARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSN--ANEAMSL 297 (634)
Q Consensus 220 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~ 297 (634)
..++.-|...|+.++|.+.++++..+... ...+...+..++-+.++ .+.+..+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-------------------------~e~V~~~i~~alE~~~~~~re~~~~L 67 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFH-------------------------HELVYEAIVMVLESTGESAFKMILDL 67 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-------------------------HHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcch-------------------------HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 45777888889999999999887643211 22333444455554322 3456677
Q ss_pred HHHHhhCCCCCC
Q 036704 298 FSEMGDRELIPD 309 (634)
Q Consensus 298 ~~~m~~~g~~p~ 309 (634)
+..+...|+-+.
T Consensus 68 L~~L~~~~~is~ 79 (152)
T 2ion_A 68 LKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHTTCSCH
T ss_pred HHHHHHCCCcCH
Confidence 777776665443
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.70 E-value=2.4e+02 Score=22.78 Aligned_cols=53 Identities=8% Similarity=0.119 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCCh
Q 036704 459 EALKLFRRMRSSGVRPN-HVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTR 512 (634)
Q Consensus 459 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 512 (634)
.+..+|..|..+|+--. +..|......+...|++.+|.++|+.-.+. +-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 35667777777775544 455666666777777788887777777765 555543
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.57 E-value=2.3e+02 Score=30.89 Aligned_cols=53 Identities=8% Similarity=-0.124 Sum_probs=35.5
Q ss_pred hhhHHhhcCChHHHHHHhhcccCCCCccchHHHHHHHHhcCChHHHHHHHHHhhh
Q 036704 18 YWDAFELCMLLDQAGEVVDSFLRRFDDIWDFDLFSSLCKQNLYNEALVAFDFLQN 72 (634)
Q Consensus 18 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 72 (634)
+...+...|.++.|.++...++. ++.. .|.+.+.+...|++++|.+.|+++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~-~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIA-VYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHH-HHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHH-HHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 45556667788877776655554 3322 23455668888888888888887753
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.41 E-value=2.4e+02 Score=22.37 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCC
Q 036704 413 MNGLMDMYVKCGSLGSARELFNFMEDPDVV---SWSSLIVGYAQFGC--GEEALKLFRRMRSSGVRPN 475 (634)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 475 (634)
...++.-|...|+.++|.+.++++..|... ....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345667777778888888888887655322 23333344444322 3456677777776664443
No 316
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.31 E-value=2.3e+02 Score=23.91 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=6.6
Q ss_pred HccCChHHHHHHhc
Q 036704 126 GKCGSLEDARMVFD 139 (634)
Q Consensus 126 ~~~g~~~~A~~~~~ 139 (634)
+..|+.+-+..+++
T Consensus 84 ~~~~~~~~v~~Ll~ 97 (240)
T 3eu9_A 84 TRQGHLSMVVQLMK 97 (240)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455554444444
No 317
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.78 E-value=4e+02 Score=24.33 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036704 534 FINQMAFDDD--IVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGKWEEVARLMGSMKERG 608 (634)
Q Consensus 534 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 608 (634)
+|...+.+|. ..++...+....+.+++..|..+.+++++..|... ..++|.+++....+.+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3444466663 45778888889999999999999999999987521 2245777777766543
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.28 E-value=1.7e+02 Score=19.90 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=41.1
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhcCC-CchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 036704 170 VQMLQSGLMPDQFTFGSIIRACSGLC-CVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRI 232 (634)
Q Consensus 170 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 232 (634)
+.|.+.|+.++..-. .++..+...+ ..-.+.++.+.+.+.+...+..|....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 346677777766543 4555555554 5567788888887777666767767777777776654
No 319
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.89 E-value=98 Score=22.05 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 036704 549 SLLASCKTHGNVDVGKRAAEN 569 (634)
Q Consensus 549 ~l~~~~~~~g~~~~a~~~~~~ 569 (634)
.....+.+.|++++|++..++
T Consensus 20 RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHH
Confidence 334445555555555554444
No 320
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.86 E-value=4.1e+02 Score=24.13 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 036704 413 MNGLMDMYVKCGSLGSARELFNFMEDPDVV---SWSSLIVGYAQFGC--GEEALKLFRRMRSSGVRP 474 (634)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p 474 (634)
...++.-|...|+.++|.+.++++..|... ....+..++-+.++ .+....++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 345566666777777777777777655222 22223333333222 344556666666555443
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.99 E-value=1.9e+02 Score=23.36 Aligned_cols=61 Identities=11% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCC--CcccHHHHHH------HhhccCChhHHHHHHHHHHHc
Q 036704 48 FDLFSSLCKQNLYNEALVAFDFLQNNTNFRI--RPSTYADLIS------ACSSLRSLQLGRKVHDHILSS 109 (634)
Q Consensus 48 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~ 109 (634)
+.-...+...|++-+|-++|+..... ...+ +...|..||+ ...+.|+...|..++.+....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~-~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYN-YGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTT-TCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
No 322
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.28 E-value=4.7e+02 Score=24.15 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCCC
Q 036704 278 WNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTVRSLLCACTSPL-SLYQGMQIHSYIIKKGFYSN 344 (634)
Q Consensus 278 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~ 344 (634)
...++.-|...|+.++|...++++......+ ......+..+.-+.. ..+.+..++..+.+.++.+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 4567788888899999999998875322111 122333333333322 23444556666666555443
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.24 E-value=2e+02 Score=22.54 Aligned_cols=47 Identities=11% Similarity=-0.072 Sum_probs=28.5
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCC
Q 036704 149 WTAMIAGCSQNGQENAAIELYVQMLQSGLMPDQFTFGSIIRACSGLC 195 (634)
Q Consensus 149 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 195 (634)
-..++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34455556566667778888888877665555555544555444444
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.90 E-value=3.1e+02 Score=21.98 Aligned_cols=70 Identities=7% Similarity=0.064 Sum_probs=48.3
Q ss_pred hHHHHHHH-HHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHh--cCCCChhHHHHHHHHHHhcCChh
Q 036704 163 NAAIELYV-QMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKS--EHGSHLISQNALIAMYTKFDRIL 233 (634)
Q Consensus 163 ~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 233 (634)
+.+++-+. .+++.|+.++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34444443 4556788776543 35566666777788899999999888 77777776666777777777544
No 325
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.76 E-value=2.7e+02 Score=21.28 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCC
Q 036704 413 MNGLMDMYVKCGSLGSARELFNFMEDPDVV---SWSSLIVGYAQFGC--GEEALKLFRRMRSSGVRPN 475 (634)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 475 (634)
...++.-|...|+.++|.+.++++..|... ....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345667777778888888888887655322 22333344444332 3556777777777665443
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.70 E-value=5.7e+02 Score=24.94 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=69.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 036704 389 ASLEMGTQLHCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFR 465 (634)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 465 (634)
.+.+.|.++ +.+.|++-....|..-.+.+...|++++|-++--..+. .+..|.+.+-..-...|...-.+.+|.
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 444444433 33455655556666667777888888888887766654 334444433333333455555666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036704 466 RMRSSGVRPNHVTLVGVLTACSHVGLVEEGLQLYRIMQNEYGIIPTRERRSCVVDLLARAGRVHEAEDFINQMA 539 (634)
Q Consensus 466 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 539 (634)
.+.+.| +.+..-=.-+++.-...|+.+-..+.+ ++..+..+...-. ++ +..+..-|..+|.+.+
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl----~e~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL----KEDKLECSEELGD-LV----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH----HHTCSCCCHHHHH-HH----HHHCSHHHHHHHHHHC
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHH----hcCCccccHHhHh-hh----hhcCHHHHHHHHHHcC
Confidence 666665 334322223333334444444333332 2224444443322 11 3345566666666654
No 327
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.65 E-value=1.7e+02 Score=22.99 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=36.6
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 036704 170 VQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRI 232 (634)
Q Consensus 170 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 232 (634)
+.+++.|+.++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345566776665432 2333333444 557778888887777666666666666666666644
No 328
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=21.47 E-value=5.3e+02 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 036704 580 ALVLLCNIYASSGKWEEVARLMGSM 604 (634)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (634)
.+...+..++.+|+.+.|+++++.+
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~l 362 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSL 362 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4446677889999999999999754
No 329
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.18 E-value=5.3e+02 Score=24.42 Aligned_cols=346 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHHhccCCCCCccchH--HHHHHHHhCCCh
Q 036704 85 DLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSLEDARMVFDEMPQRNVVSWT--AMIAGCSQNGQE 162 (634)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~g~~ 162 (634)
+.+...+..|+.+.+..+++. ...+..........+...+..|+.+-+..+++.-...+..... +.+...++.|+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred CHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCCchhHhHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 036704 163 NAAIELYVQMLQSGLMPDQFTFGSIIRACSGLCCVGLGRQLHAHVIKSEHGSHLISQNALIAMYTKFDRILDAWNVFSSI 242 (634)
Q Consensus 163 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 242 (634)
+-+.-+++. ...+......-.+.+...+..|+.+.+..+++. ..........-...+...+..|+.+-+..+++.-
T Consensus 94 ~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 169 (437)
T 1n11_A 94 NMVKLLLEN--NANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169 (437)
T ss_dssp HHHHHHHHH--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q ss_pred CCCCcchHHHHHHHhhccchHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCHhHH--HHHHHHh
Q 036704 243 ARKDITSWGSMIDGFSKLDFARTVFNEMESPNLASWNTIIAGVASCSNANEAMSLFSEMGDRELIPDGLTV--RSLLCAC 320 (634)
Q Consensus 243 ~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~ 320 (634)
...+. .+....+.|..+..... .++++.+.+.|..|+.... ...+...
T Consensus 170 ~~~~~-------------------------~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 219 (437)
T 1n11_A 170 AHPNA-------------------------AGKNGLTPLHVAVHHNN-----LDIVKLLLPRGGSPHSPAWNGYTPLHIA 219 (437)
T ss_dssp CCTTC-------------------------CCSSCCCHHHHHHHTTC-----HHHHHHHGGGTCCSCCCCTTCCCHHHHH
T ss_pred CCCCC-------------------------CCCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCCcCCCCCCHHHHH
Q ss_pred cCCCChHHHHHHHH---HHHHhCCCCChhHHhHHHhcCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccccHHHHHHH
Q 036704 321 TSPLSLYQGMQIHS---YIIKKGFYSNVPVCNAILQHQAGELFRLFSLMLASQTKPDHITFNDVMGACAAMASLEMGTQL 397 (634)
Q Consensus 321 ~~~g~~~~a~~~~~---~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 397 (634)
+..|+.+-+..+++ ...............+...+..+-+.-+++. ...+......-.+.+...+..|+.+-+..+
T Consensus 220 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 297 (437)
T 1n11_A 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK--QANGNLGNKSGLTPLHLVAQEGHVPVADVL 297 (437)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHhhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 036704 398 HCYIMKTGLALDVFVMNGLMDMYVKCGSLGSARELFNFMED---PDVVSWSSLIVGYAQFGCGEEALKLFRRMRSSGVRP 474 (634)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 474 (634)
++. ...+......-...+...+..|+.+-+.-+++.-.. .+...++.|..+..... .++.+.+.+.|..|
T Consensus 298 l~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~-----~~iv~~Ll~~ga~~ 370 (437)
T 1n11_A 298 IKH--GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH-----TDIVTLLLKNGASP 370 (437)
T ss_dssp HHH--TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCS
T ss_pred HhC--CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCCh-----HHHHHHHHHCcCCC
Q ss_pred C
Q 036704 475 N 475 (634)
Q Consensus 475 ~ 475 (634)
+
T Consensus 371 ~ 371 (437)
T 1n11_A 371 N 371 (437)
T ss_dssp C
T ss_pred C
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.78 E-value=2.2e+02 Score=24.69 Aligned_cols=54 Identities=11% Similarity=-0.006 Sum_probs=33.9
Q ss_pred HHHhhccCChhHHHHHHHHHHHcCCCCCcc-------hhhHHHHHHH--ccCChHHHHHHhcc
Q 036704 87 ISACSSLRSLQLGRKVHDHILSSKCQPDAV-------LHNHILNMYG--KCGSLEDARMVFDE 140 (634)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~g~~~~A~~~~~~ 140 (634)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 334557789998888998888887665533 3344443332 55666666666553
No 331
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.51 E-value=2e+02 Score=29.74 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=49.5
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 036704 528 VHEAEDFINQMAFDDDIVVWKSLLASCKTHGNVDVGKRAAENILKIDPTNSAALVLLCNIYASSGK 593 (634)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 593 (634)
.+.|.++++-|+ .........+.....|++..|.++.+.++..+|++..+-..++.+|.+.|.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456677777774 233444556666789999999999999999999999999999999887764
No 332
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.14 E-value=1.2e+02 Score=23.57 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=31.3
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCCh
Q 036704 85 DLISACSSLRSLQLGRKVHDHILSSKCQPDAVLHNHILNMYGKCGSL 131 (634)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 131 (634)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45555555566677888888887776666666666666677666644
Done!