Query 036705
Match_columns 212
No_of_seqs 151 out of 1573
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 6E-34 1.3E-38 229.3 4.5 73 8-80 1-75 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 6.7E-34 1.4E-38 195.8 3.0 72 9-80 1-72 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 6.8E-31 1.5E-35 183.4 4.0 72 9-80 1-73 (83)
4 smart00432 MADS MADS domain. 100.0 7.5E-31 1.6E-35 170.6 3.8 59 9-67 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 6.1E-30 1.3E-34 166.5 3.2 59 9-67 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 8E-28 1.7E-32 151.5 -2.1 51 16-66 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 2.1E-21 4.4E-26 160.5 3.1 78 3-80 57-143 (338)
8 COG5068 ARG80 Regulator of arg 99.5 1.9E-14 4E-19 124.4 2.9 69 7-75 80-148 (412)
9 PF01486 K-box: K-box region; 98.5 5.9E-07 1.3E-11 64.8 7.6 79 110-193 16-94 (100)
10 COG3883 Uncharacterized protei 76.3 24 0.00052 29.9 8.6 54 147-201 79-133 (265)
11 PF15079 DUF4546: Domain of un 75.6 22 0.00048 27.9 7.6 65 100-178 48-112 (205)
12 PF06698 DUF1192: Protein of u 73.6 9.6 0.00021 24.6 4.4 33 137-169 13-45 (59)
13 PF10584 Proteasome_A_N: Prote 70.1 1.7 3.7E-05 22.6 0.3 12 52-63 5-16 (23)
14 KOG4302 Microtubule-associated 68.3 46 0.001 31.9 9.4 34 138-171 150-183 (660)
15 PF10491 Nrf1_DNA-bind: NLS-bi 66.3 11 0.00024 30.5 4.3 45 34-78 36-87 (214)
16 PF05852 DUF848: Gammaherpesvi 64.6 31 0.00068 26.5 6.3 33 142-174 83-115 (146)
17 cd00187 TOP4c DNA Topoisomeras 61.0 77 0.0017 28.9 9.2 60 14-79 257-327 (445)
18 PHA02592 52 DNA topisomerase I 52.8 1.1E+02 0.0023 28.0 8.7 42 33-79 285-326 (439)
19 PF04521 Viral_P18: ssRNA posi 52.1 36 0.00078 25.2 4.5 23 25-47 4-26 (120)
20 PF01763 Herpes_UL6: Herpesvir 51.4 82 0.0018 29.6 7.8 20 183-202 440-459 (557)
21 PF07146 DUF1389: Protein of u 48.9 42 0.00091 29.2 5.3 67 145-211 181-257 (314)
22 TIGR01916 F420_cofE F420-0:gam 48.3 18 0.00039 30.2 2.8 30 40-69 133-162 (243)
23 PF09151 DUF1936: Domain of un 47.8 15 0.00033 20.4 1.5 28 41-68 2-31 (36)
24 KOG4252 GTP-binding protein [S 47.4 42 0.00091 27.0 4.6 28 46-79 91-118 (246)
25 PF09941 DUF2173: Uncharacteri 44.2 17 0.00037 26.5 1.8 25 39-64 3-27 (108)
26 PF07106 TBPIP: Tat binding pr 42.3 1.6E+02 0.0034 22.7 12.2 32 143-174 107-138 (169)
27 PRK01919 tatB sec-independent 42.0 1.7E+02 0.0037 23.0 7.8 10 50-59 15-24 (169)
28 KOG0432 Valyl-tRNA synthetase 41.7 52 0.0011 32.6 5.1 18 37-54 880-897 (995)
29 COG5000 NtrY Signal transducti 39.9 20 0.00043 34.1 2.0 22 43-64 374-395 (712)
30 KOG3366 Mitochondrial F1F0-ATP 38.8 1.6E+02 0.0034 23.3 6.5 14 141-154 129-142 (172)
31 PF09403 FadA: Adhesion protei 38.2 1.7E+02 0.0037 21.9 10.7 23 148-170 89-111 (126)
32 PRK04098 sec-independent trans 37.7 53 0.0011 25.6 3.8 25 145-169 81-105 (158)
33 PF14257 DUF4349: Domain of un 35.7 2.2E+02 0.0049 23.5 7.7 59 100-170 126-184 (262)
34 PF08317 Spc7: Spc7 kinetochor 34.9 3E+02 0.0065 23.8 8.9 31 140-170 201-231 (325)
35 smart00787 Spc7 Spc7 kinetocho 34.3 3.1E+02 0.0067 23.8 9.0 33 139-171 195-227 (312)
36 PF00843 Arena_nucleocap: Aren 34.1 79 0.0017 28.8 4.7 26 141-166 87-112 (533)
37 KOG3048 Molecular chaperone Pr 34.0 1E+02 0.0022 23.6 4.7 35 140-174 8-42 (153)
38 PF11460 DUF3007: Protein of u 33.9 60 0.0013 23.4 3.3 18 141-158 86-103 (104)
39 PF08432 Vfa1: AAA-ATPase Vps4 33.6 1.4E+02 0.003 23.6 5.8 13 46-58 11-23 (182)
40 PHA03161 hypothetical protein; 33.4 2.2E+02 0.0047 22.0 6.4 32 145-176 86-117 (150)
41 PF05873 Mt_ATP-synt_D: ATP sy 33.2 1E+02 0.0023 23.9 4.9 13 141-153 127-139 (161)
42 PF05700 BCAS2: Breast carcino 32.2 2.8E+02 0.006 22.6 7.5 67 101-174 99-165 (221)
43 PRK13293 F420-0--gamma-glutamy 31.9 45 0.00098 27.9 2.8 30 40-69 134-163 (245)
44 PRK04654 sec-independent trans 31.9 95 0.0021 25.4 4.5 17 41-59 8-24 (214)
45 PRK10803 tol-pal system protei 31.5 97 0.0021 26.0 4.8 36 40-76 10-45 (263)
46 PF04120 Iron_permease: Low af 31.4 2.3E+02 0.005 21.4 7.6 29 141-169 91-119 (132)
47 PRK04863 mukB cell division pr 29.3 4.2E+02 0.009 28.3 9.6 30 141-170 431-460 (1486)
48 KOG0184 20S proteasome, regula 27.6 31 0.00067 28.4 1.0 22 43-64 3-24 (254)
49 KOG0183 20S proteasome, regula 27.3 33 0.00071 28.2 1.1 17 48-64 4-20 (249)
50 TIGR03156 GTP_HflX GTP-binding 27.0 4.3E+02 0.0093 23.1 8.8 35 42-76 25-62 (351)
51 PF08181 DegQ: DegQ (SacQ) fam 27.0 1.1E+02 0.0024 18.1 3.0 13 147-159 6-18 (46)
52 PF06020 Roughex: Drosophila r 26.8 31 0.00067 29.6 0.9 17 42-58 182-198 (334)
53 PLN03230 acetyl-coenzyme A car 26.6 4.8E+02 0.01 23.8 8.4 50 148-200 105-156 (431)
54 PF09278 MerR-DNA-bind: MerR, 25.8 1.8E+02 0.0038 18.2 4.4 22 151-172 35-56 (65)
55 PF04678 DUF607: Protein of un 25.7 1.6E+02 0.0035 23.2 4.9 45 64-119 32-77 (180)
56 COG4831 Roadblock/LC7 domain [ 25.5 48 0.001 23.6 1.5 29 37-66 3-31 (109)
57 TIGR02338 gimC_beta prefoldin, 24.9 2.6E+02 0.0057 19.9 6.6 14 66-79 2-15 (110)
58 COG4917 EutP Ethanolamine util 24.8 47 0.001 25.2 1.5 24 41-64 58-81 (148)
59 PF04873 EIN3: Ethylene insens 24.7 25 0.00053 31.1 0.0 48 23-70 44-92 (354)
60 PF00846 Hanta_nucleocap: Hant 24.7 2.9E+02 0.0062 24.9 6.5 22 100-121 3-24 (428)
61 cd07665 BAR_SNX1 The Bin/Amphi 23.9 91 0.002 25.9 3.2 79 99-183 29-107 (234)
62 TIGR03752 conj_TIGR03752 integ 23.8 4.9E+02 0.011 24.0 8.0 28 100-127 67-94 (472)
63 PRK00708 sec-independent trans 23.7 2.4E+02 0.0053 23.0 5.5 18 40-59 7-24 (209)
64 PLN03237 DNA topoisomerase 2; 23.3 7.2E+02 0.016 26.6 9.9 43 33-79 972-1014(1465)
65 PTZ00108 DNA topoisomerase 2-l 23.1 5.3E+02 0.012 27.4 8.9 27 51-79 962-988 (1388)
66 PF14263 DUF4354: Domain of un 23.0 29 0.00062 25.9 0.1 41 18-63 41-81 (124)
67 PF06937 EURL: EURL protein; 23.0 1.5E+02 0.0032 25.2 4.2 39 139-177 213-251 (285)
68 COG3883 Uncharacterized protei 22.9 4.7E+02 0.01 22.2 9.1 31 148-178 87-117 (265)
69 PF11867 DUF3387: Domain of un 22.9 4.7E+02 0.01 22.6 7.6 46 142-188 261-321 (335)
70 PRK01770 sec-independent trans 22.6 1.5E+02 0.0032 23.5 4.0 18 40-59 7-24 (171)
71 TIGR00763 lon ATP-dependent pr 22.5 4.5E+02 0.0097 25.7 8.1 55 147-201 246-307 (775)
72 PRK00182 tatB sec-independent 22.1 33 0.00072 26.8 0.3 34 41-78 9-42 (160)
73 KOG4106 Uncharacterized conser 22.0 20 0.00043 26.2 -0.9 27 1-31 1-27 (125)
74 PF08796 DUF1797: Protein of u 21.8 52 0.0011 21.8 1.1 19 46-64 24-42 (67)
75 PRK00736 hypothetical protein; 21.8 2.4E+02 0.0053 18.4 5.3 30 96-125 16-45 (68)
76 PF14282 FlxA: FlxA-like prote 21.7 3.1E+02 0.0067 19.6 8.0 55 99-174 19-73 (106)
77 PLN03128 DNA topoisomerase 2; 21.5 6.8E+02 0.015 26.0 9.3 27 51-79 961-987 (1135)
78 PF04102 SlyX: SlyX; InterPro 21.2 2.5E+02 0.0054 18.3 4.8 27 97-123 16-42 (69)
79 PF06694 Plant_NMP1: Plant nuc 21.1 4.7E+02 0.01 22.7 6.9 23 143-165 203-225 (325)
80 PRK11058 GTPase HflX; Provisio 20.7 6.3E+02 0.014 22.8 9.0 39 39-77 27-71 (426)
81 smart00782 PhnA_Zn_Ribbon PhnA 20.2 44 0.00095 20.5 0.5 22 35-56 2-23 (47)
82 PRK12628 flgC flagellar basal 20.2 2.2E+02 0.0047 21.7 4.4 25 46-70 66-92 (140)
83 PF13270 DUF4061: Domain of un 20.2 3.2E+02 0.0069 19.1 5.0 18 100-117 37-54 (90)
84 COG5179 TAF1 Transcription ini 20.1 84 0.0018 30.1 2.5 46 31-77 444-489 (968)
85 KOG4637 Adaptor for phosphoino 20.0 64 0.0014 28.8 1.6 40 39-80 366-412 (464)
86 PF04977 DivIC: Septum formati 20.0 2.6E+02 0.0056 18.1 4.8 25 102-126 20-44 (80)
87 PF13082 DUF3931: Protein of u 20.0 39 0.00084 21.2 0.2 37 11-47 6-44 (66)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=6e-34 Score=229.27 Aligned_cols=73 Identities=55% Similarity=0.924 Sum_probs=71.2
Q ss_pred CCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCC--chhhHhHhhhcC
Q 036705 8 AGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN--VDSIIDRYLARN 80 (212)
Q Consensus 8 mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~ps--v~~Vl~Ry~~~~ 80 (212)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+||+|+ |+.|++||.+..
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~ 75 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLT 75 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999999999999999999988 999999998865
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.98 E-value=6.7e-34 Score=195.77 Aligned_cols=72 Identities=47% Similarity=0.839 Sum_probs=70.6
Q ss_pred CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhcC
Q 036705 9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARN 80 (212)
Q Consensus 9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~~ 80 (212)
||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||||+|++|.|++|++++||+||++.+
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~ 72 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS 72 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999875
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=6.8e-31 Score=183.41 Aligned_cols=72 Identities=51% Similarity=0.856 Sum_probs=69.5
Q ss_pred CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCC-chhhHhHhhhcC
Q 036705 9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN-VDSIIDRYLARN 80 (212)
Q Consensus 9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~ps-v~~Vl~Ry~~~~ 80 (212)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.+.|++++ ++.++++|...+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~ 73 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS 73 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence 799999999999999999999999999999999999999999999999999999998877 999999998775
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=7.5e-31 Score=170.63 Aligned_cols=59 Identities=58% Similarity=0.969 Sum_probs=58.1
Q ss_pred CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCC
Q 036705 9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHP 67 (212)
Q Consensus 9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~p 67 (212)
||+||+|++|+|+++|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=6.1e-30 Score=166.49 Aligned_cols=59 Identities=58% Similarity=0.899 Sum_probs=57.7
Q ss_pred CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCC
Q 036705 9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHP 67 (212)
Q Consensus 9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~p 67 (212)
||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999876
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.93 E-value=8e-28 Score=151.50 Aligned_cols=51 Identities=59% Similarity=0.992 Sum_probs=46.5
Q ss_pred eeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCC
Q 036705 16 SKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGH 66 (212)
Q Consensus 16 k~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~ 66 (212)
|+|+|++.|++||+||+.||||||+||||||||+||+|||||+|++|.|++
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999999964
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.83 E-value=2.1e-21 Score=160.46 Aligned_cols=78 Identities=38% Similarity=0.574 Sum_probs=70.3
Q ss_pred CCCCCCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCch---------hhH
Q 036705 3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVD---------SII 73 (212)
Q Consensus 3 ~~~~~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~---------~Vl 73 (212)
..|++.||+||+|++|+|+..|.+||+|||.||||||+|||||+|.+|-|+|.|+.|.+|.|++|..+ .+|
T Consensus 57 ~~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lI 136 (338)
T KOG0015|consen 57 GGKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALI 136 (338)
T ss_pred CCccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999764 455
Q ss_pred hHhhhcC
Q 036705 74 DRYLARN 80 (212)
Q Consensus 74 ~Ry~~~~ 80 (212)
.-.++.+
T Consensus 137 q~cLn~p 143 (338)
T KOG0015|consen 137 QACLNAP 143 (338)
T ss_pred HHHhcCC
Confidence 5555555
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.47 E-value=1.9e-14 Score=124.42 Aligned_cols=69 Identities=38% Similarity=0.575 Sum_probs=64.9
Q ss_pred CCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhH
Q 036705 7 CAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDR 75 (212)
Q Consensus 7 ~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~R 75 (212)
.|||+|+.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|.++.|+.|..+.|+.-
T Consensus 80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~ 148 (412)
T COG5068 80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS 148 (412)
T ss_pred ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence 689999999999999999999999999999999999999999999999999999999999987666543
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.50 E-value=5.9e-07 Score=64.77 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHhhhH
Q 036705 110 QVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPSFARALDI 189 (212)
Q Consensus 110 ~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~~~s~~~~~~~~~~~~ 189 (212)
.+..++...+..++.|+... +++.|++|++|+++||..|+..|+..+..|+.|+.+++.+++..+.......-+.
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~-----R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKEL-----RHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444454433 2567899999999999999999999999999999999999999888887776665
Q ss_pred hhhh
Q 036705 190 IMII 193 (212)
Q Consensus 190 ~~~~ 193 (212)
+..+
T Consensus 91 n~~L 94 (100)
T PF01486_consen 91 NNQL 94 (100)
T ss_pred HHHH
Confidence 5544
No 10
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.30 E-value=24 Score=29.87 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHhhhHhhhhccchhhhh
Q 036705 147 LHELEQLKTAMEELKKNVEQQANKILIDSKN-NPSPSFARALDIIMIISRSFFEFC 201 (212)
Q Consensus 147 ~eEL~~L~~~Le~~l~~V~~R~~~L~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~ 201 (212)
-.++..|...|+.+...|++|.+-|-....+ +.......|+|.+-+ +-||..|+
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~-SkSfsD~I 133 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILN-SKSFSDLI 133 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHc-cCcHHHHH
Confidence 3577788888888888888777665443332 222223346776543 45565553
No 11
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=75.63 E-value=22 Score=27.93 Aligned_cols=65 Identities=23% Similarity=0.418 Sum_probs=44.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 036705 100 NIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNN 178 (212)
Q Consensus 100 ~i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~~~s~ 178 (212)
...+|.+.+.+..++|. .+.|++.++. +|-|-+.+.|++|..-+-+..+...++++-|+.-+-++
T Consensus 48 ~T~eLkNeLREVREELk---EKmeEIKQIK-----------diMDKDFDKL~EFVEIMKeMQkDMDEKMDvLiNiQKnn 112 (205)
T PF15079_consen 48 GTQELKNELREVREELK---EKMEEIKQIK-----------DIMDKDFDKLHEFVEIMKEMQKDMDEKMDVLINIQKNN 112 (205)
T ss_pred ccHHHHHHHHHHHHHHH---HHHHHHHHHH-----------HHHhhhHHHHHHHHHHHHHHHHhHHHhhhHHhhccccc
Confidence 34566666666665553 4445555553 33444567888888888899999999999998877653
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=73.62 E-value=9.6 Score=24.62 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=26.2
Q ss_pred cccCccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 137 WWEAPINELGLHELEQLKTAMEELKKNVEQQAN 169 (212)
Q Consensus 137 ~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~ 169 (212)
..|.+|+.||++||.+-...|+.=...++.-+.
T Consensus 13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 13 EIGEDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred ccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999988888877666665444
No 13
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=70.11 E-value=1.7 Score=22.56 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=9.7
Q ss_pred EEeeCCCCcccc
Q 036705 52 IIVFSPANKAFS 63 (212)
Q Consensus 52 lIvfsp~gk~~~ 63 (212)
+.+|||+|++|.
T Consensus 5 ~t~FSp~Grl~Q 16 (23)
T PF10584_consen 5 ITTFSPDGRLFQ 16 (23)
T ss_dssp TTSBBTTSSBHH
T ss_pred ceeECCCCeEEe
Confidence 458999999874
No 14
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.27 E-value=46 Score=31.89 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=28.3
Q ss_pred ccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 138 WEAPINELGLHELEQLKTAMEELKKNVEQQANKI 171 (212)
Q Consensus 138 ~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L 171 (212)
.-.+..+|+.+.|.+|...|..+.+....|.+..
T Consensus 150 ~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv 183 (660)
T KOG4302|consen 150 LIADESDLSLEKLEELREHLNELQKEKSDRLEKV 183 (660)
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999988887777765
No 15
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=66.32 E-value=11 Score=30.52 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=34.9
Q ss_pred chhhh----hhhhhhhccccEEEEeeCCCCc---ccccCCCCchhhHhHhhh
Q 036705 34 GVFKK----ASELSTLCGIDIAIIVFSPANK---AFSFGHPNVDSIIDRYLA 78 (212)
Q Consensus 34 GL~KK----A~ELs~LCgvevalIvfsp~gk---~~~f~~psv~~Vl~Ry~~ 78 (212)
-|+.| ..|++|-+|-.|.|++.+|+-. .-.||....+.|+..|..
T Consensus 36 rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~ 87 (214)
T PF10491_consen 36 RLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP 87 (214)
T ss_pred HHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence 35555 4799999999999999999753 446688778888887764
No 16
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=64.63 E-value=31 Score=26.49 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=28.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036705 142 INELGLHELEQLKTAMEELKKNVEQQANKILID 174 (212)
Q Consensus 142 l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~ 174 (212)
++--.++++..|.+.++++...|...++.+...
T Consensus 83 ~d~~kv~~~E~L~d~v~eLkeel~~el~~l~~~ 115 (146)
T PF05852_consen 83 FDRKKVEDLEKLTDRVEELKEELEFELERLQSA 115 (146)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666678999999999999999999999998744
No 17
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=60.96 E-value=77 Score=28.93 Aligned_cols=60 Identities=27% Similarity=0.597 Sum_probs=37.7
Q ss_pred eeeeeCCCCCcc-eecc---ccc-------cchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705 14 AISKIPKKNHLQ-VTFS---KRR-------TGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLAR 79 (212)
Q Consensus 14 ~ik~I~n~~~R~-~tF~---KRr-------~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~ 79 (212)
.|.-|.|++++. +.|- ||. .+|+|+ ..|.+--++ -+++|.++|++..| ++.++|+.|...
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~-t~L~~s~~~--Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKV-TKLQTTFGI--NMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHh-cCCceeeee--eEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 466777777773 3332 222 255543 333333333 67888889998877 788999999765
No 18
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=52.77 E-value=1.1e+02 Score=28.02 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=27.7
Q ss_pred cchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705 33 TGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLAR 79 (212)
Q Consensus 33 ~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~ 79 (212)
++|+|+- .|.+ -..+-+++|+++|++..| .++.+||+.|...
T Consensus 285 ~~L~k~~-~L~~--~~~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~~ 326 (439)
T PHA02592 285 EKIMKDF-GLIE--RVSQNITVINENGKLKVY--ENAEDLIRDFVEI 326 (439)
T ss_pred HHHHHhc-Cchh--eeeeeEEEEecCCeeeec--CCHHHHHHHHHHH
Confidence 3566543 3332 234778999999987665 4678899888754
No 19
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=52.05 E-value=36 Score=25.18 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=18.0
Q ss_pred ceeccccccchhhhhhhhhhhcc
Q 036705 25 QVTFSKRRTGVFKKASELSTLCG 47 (212)
Q Consensus 25 ~~tF~KRr~GL~KKA~ELs~LCg 47 (212)
-.+|+|+|..+++|-.+-.+-|.
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC~ 26 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKCR 26 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeeec
Confidence 46789999999999887666443
No 20
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=51.35 E-value=82 Score=29.65 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=13.5
Q ss_pred hHHhhhHhhhhccchhhhhh
Q 036705 183 FARALDIIMIISRSFFEFCL 202 (212)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ 202 (212)
....+|-..-.+||||+=..
T Consensus 440 ~s~~~~d~~~VaNSFfSqYV 459 (557)
T PF01763_consen 440 VSSSMDDNRYVANSFFSQYV 459 (557)
T ss_pred cccccCCCCeeeeccccccC
Confidence 34455566778999998443
No 21
>PF07146 DUF1389: Protein of unknown function (DUF1389); InterPro: IPR010792 This family consists of several hypothetical bacterial proteins, which seem to be specific to Chlamydia pneumoniae (Chlamydophila pneumoniae). Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=48.87 E-value=42 Score=29.16 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhc--cCCCCchhHHhhhHhhhhccchhhhhhccchhhhhc
Q 036705 145 LGLHELEQLKTAME--------ELKKNVEQQANKILIDS--KNNPSPSFARALDIIMIISRSFFEFCLISIKWRQLQ 211 (212)
Q Consensus 145 Ls~eEL~~L~~~Le--------~~l~~V~~R~~~L~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (212)
+|.+|..-|..... .....++.|+..-+... ...........-+..+++++..+.+|.-.+-|.|||
T Consensus 181 vS~eey~~L~~hA~n~tW~~~~~~V~~i~~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LL~lc~HG~SWeQlq 257 (314)
T PF07146_consen 181 VSEEEYSTLKNHARNNTWDQQQDIVSAIVDRLIACLGNYYQYSFENDKVILLSLTEESISNWLLLLCKHGVSWEQLQ 257 (314)
T ss_pred ccHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhhhhhhhhhhhccchhHHHHhhhhhHHHHHHHHHHcCCCHHHHH
Confidence 46667766666552 34667777774444443 223333344444688889999999999999999997
No 22
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=48.35 E-value=18 Score=30.22 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=25.9
Q ss_pred hhhhhhccccEEEEeeCCCCcccccCCCCc
Q 036705 40 SELSTLCGIDIAIIVFSPANKAFSFGHPNV 69 (212)
Q Consensus 40 ~ELs~LCgvevalIvfsp~gk~~~f~~psv 69 (212)
.+|--.+|++|+|||+.+.|.+|--|.+.+
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~gv 162 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQVGV 162 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCCCe
Confidence 467778999999999999999988887754
No 23
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=47.78 E-value=15 Score=20.42 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=18.2
Q ss_pred hhhhhccccEEEEeeCCCCcc--cccCCCC
Q 036705 41 ELSTLCGIDIAIIVFSPANKA--FSFGHPN 68 (212)
Q Consensus 41 ELs~LCgvevalIvfsp~gk~--~~f~~ps 68 (212)
.|+--|||-|-+-||...|.. |-.+.|.
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence 367789999999999999964 4445564
No 24
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=47.42 E-value=42 Score=27.02 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=20.7
Q ss_pred ccccEEEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705 46 CGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLAR 79 (212)
Q Consensus 46 CgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~ 79 (212)
-||.+||+|||.++. -|.+.+++=|...
T Consensus 91 rgaqa~vLVFSTTDr------~SFea~~~w~~kv 118 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDR------YSFEATLEWYNKV 118 (246)
T ss_pred ccccceEEEEecccH------HHHHHHHHHHHHH
Confidence 489999999999885 2456666666543
No 25
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=44.18 E-value=17 Score=26.46 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.1
Q ss_pred hhhhhhhccccEEEEeeCCCCccccc
Q 036705 39 ASELSTLCGIDIAIIVFSPANKAFSF 64 (212)
Q Consensus 39 A~ELs~LCgvevalIvfsp~gk~~~f 64 (212)
..+|-.|-||-+ +..||++|++.+|
T Consensus 3 l~~Lm~lpGv~A-Ag~Fs~~G~l~e~ 27 (108)
T PF09941_consen 3 LDKLMKLPGVVA-AGEFSDDGKLVEY 27 (108)
T ss_pred HHHhhcCCCeEE-EEEECCCCeEEee
Confidence 467888888855 5789999998877
No 26
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.28 E-value=1.6e+02 Score=22.72 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036705 143 NELGLHELEQLKTAMEELKKNVEQQANKILID 174 (212)
Q Consensus 143 ~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~ 174 (212)
..++.+||......|+.-...+..|+..|...
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34678888888888888888888888888773
No 27
>PRK01919 tatB sec-independent translocase; Provisional
Probab=41.98 E-value=1.7e+02 Score=23.03 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.4
Q ss_pred EEEEeeCCCC
Q 036705 50 IAIIVFSPAN 59 (212)
Q Consensus 50 valIvfsp~g 59 (212)
||||||+|..
T Consensus 15 VALiV~GPek 24 (169)
T PRK01919 15 VALVVIGPER 24 (169)
T ss_pred HHHheeCchH
Confidence 7999999954
No 28
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.71 E-value=52 Score=32.63 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=12.1
Q ss_pred hhhhhhhhhccccEEEEe
Q 036705 37 KKASELSTLCGIDIAIIV 54 (212)
Q Consensus 37 KKA~ELs~LCgvevalIv 54 (212)
--+.++++||..+.--|+
T Consensus 880 ~~~~~i~~l~~~~~v~i~ 897 (995)
T KOG0432|consen 880 EFLDEISTLTNLELVSIS 897 (995)
T ss_pred HHHHHHHHhhccceeEec
Confidence 356888999877654443
No 29
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=39.90 E-value=20 Score=34.07 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.9
Q ss_pred hhhccccEEEEeeCCCCccccc
Q 036705 43 STLCGIDIAIIVFSPANKAFSF 64 (212)
Q Consensus 43 s~LCgvevalIvfsp~gk~~~f 64 (212)
|+|.|+.++||+|.++|..+.+
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 5999999999999999987765
No 30
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=38.84 E-value=1.6e+02 Score=23.30 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=11.0
Q ss_pred ccCCCCHHHHHHHH
Q 036705 141 PINELGLHELEQLK 154 (212)
Q Consensus 141 ~l~~Ls~eEL~~L~ 154 (212)
+++.|+++|+.+-.
T Consensus 129 P~demT~ed~~ea~ 142 (172)
T KOG3366|consen 129 PFDEMTMEDLNEAF 142 (172)
T ss_pred CcccccHHHHHHhC
Confidence 68889999887643
No 31
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=38.17 E-value=1.7e+02 Score=21.87 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036705 148 HELEQLKTAMEELKKNVEQQANK 170 (212)
Q Consensus 148 eEL~~L~~~Le~~l~~V~~R~~~ 170 (212)
++-.+|....+..++.+...+..
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~ 111 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAE 111 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777665543
No 32
>PRK04098 sec-independent translocase; Provisional
Probab=37.68 E-value=53 Score=25.59 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 145 LGLHELEQLKTAMEELKKNVEQQAN 169 (212)
Q Consensus 145 Ls~eEL~~L~~~Le~~l~~V~~R~~ 169 (212)
++.++|.++..-+....+.+..-..
T Consensus 81 ~~~eel~~~~~~~~~~~~~~~~~~~ 105 (158)
T PRK04098 81 LKFEELDDLKITAENEIKSIQDLLQ 105 (158)
T ss_pred cChHHHHHHhhhhhhcchhHHHHHh
Confidence 6777777776555554444444333
No 33
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.67 E-value=2.2e+02 Score=23.53 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=36.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 100 NIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANK 170 (212)
Q Consensus 100 ~i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~ 170 (212)
..+++-.++..+..+++..+...+.|.++.+.. + +++|+..++..|......|..-..+
T Consensus 126 ~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka----------~--~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 126 SSEDVTEQYVDLEARLKNLEAEEERLLELLEKA----------K--TVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------C--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777666666666554321 1 6777877777777666665543333
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.91 E-value=3e+02 Score=23.77 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=22.7
Q ss_pred CccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 140 APINELGLHELEQLKTAMEELKKNVEQQANK 170 (212)
Q Consensus 140 ~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~ 170 (212)
..++.++.++|..+...|......|..+...
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888899998888887777666644443
No 35
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.33 E-value=3.1e+02 Score=23.76 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=24.4
Q ss_pred cCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 139 EAPINELGLHELEQLKTAMEELKKNVEQQANKI 171 (212)
Q Consensus 139 ~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L 171 (212)
...+++++.++|..+...|......+......+
T Consensus 195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 195 EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888899999999888887777665555443
No 36
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=34.05 E-value=79 Score=28.83 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 036705 141 PINELGLHELEQLKTAMEELKKNVEQ 166 (212)
Q Consensus 141 ~l~~Ls~eEL~~L~~~Le~~l~~V~~ 166 (212)
.+.+|+-+||.+|..-||.++++|..
T Consensus 87 kvG~LskdeLm~LasDLeKLk~Kv~r 112 (533)
T PF00843_consen 87 KVGDLSKDELMELASDLEKLKKKVQR 112 (533)
T ss_dssp EBTTB-HHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcCHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999998854
No 37
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=34.05 E-value=1e+02 Score=23.65 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=27.9
Q ss_pred CccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036705 140 APINELGLHELEQLKTAMEELKKNVEQQANKILID 174 (212)
Q Consensus 140 ~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~ 174 (212)
-++..||+++|..|...+|.-++-+..-.+.|..-
T Consensus 8 idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~a 42 (153)
T KOG3048|consen 8 IDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGA 42 (153)
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999988877777766666443
No 38
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=33.89 E-value=60 Score=23.44 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.7
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 036705 141 PINELGLHELEQLKTAME 158 (212)
Q Consensus 141 ~l~~Ls~eEL~~L~~~Le 158 (212)
.++.|+++|+..|...+|
T Consensus 86 Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHhCCHHHHHHHHHHhc
Confidence 578899999999998876
No 39
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=33.64 E-value=1.4e+02 Score=23.61 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=8.9
Q ss_pred ccccEEEEeeCCC
Q 036705 46 CGIDIAIIVFSPA 58 (212)
Q Consensus 46 CgvevalIvfsp~ 58 (212)
.++..|.|||-|+
T Consensus 11 ~~~k~C~IC~Kps 23 (182)
T PF08432_consen 11 TDAKACFICYKPS 23 (182)
T ss_pred CCCCceeEecCCC
Confidence 4567777777765
No 40
>PHA03161 hypothetical protein; Provisional
Probab=33.42 E-value=2.2e+02 Score=22.01 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036705 145 LGLHELEQLKTAMEELKKNVEQQANKILIDSK 176 (212)
Q Consensus 145 Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~~~ 176 (212)
=-++.+..|.+.++++...|.-.++.+-..+.
T Consensus 86 kkl~~~E~L~drv~eLkeel~~ELe~l~~~q~ 117 (150)
T PHA03161 86 HKLSAAEDLQDKILELKEDIHFEIEALNHGQP 117 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34678888999999999999999998875533
No 41
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=33.21 E-value=1e+02 Score=23.91 Aligned_cols=13 Identities=8% Similarity=0.422 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHH
Q 036705 141 PINELGLHELEQL 153 (212)
Q Consensus 141 ~l~~Ls~eEL~~L 153 (212)
++++|+++|+..-
T Consensus 127 P~e~mT~dd~~~a 139 (161)
T PF05873_consen 127 PFEQMTVDDYAAA 139 (161)
T ss_dssp -------------
T ss_pred ChHhCCHHHHHHh
Confidence 7888888887543
No 42
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.21 E-value=2.8e+02 Score=22.57 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=38.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036705 101 IRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILID 174 (212)
Q Consensus 101 i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~ 174 (212)
+..|..-+.+...+++-...+...|.-+.+- ....|. ...+.|..+...++..+..++..++.+-..
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~-g~naW~------~~n~~Le~~~~~le~~l~~~k~~ie~vN~~ 165 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKY-GENAWL------IHNEQLEAMLKRLEKELAKLKKEIEEVNRE 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544332 112232 234677777777777777777777766543
No 43
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=31.94 E-value=45 Score=27.90 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=25.1
Q ss_pred hhhhhhccccEEEEeeCCCCcccccCCCCc
Q 036705 40 SELSTLCGIDIAIIVFSPANKAFSFGHPNV 69 (212)
Q Consensus 40 ~ELs~LCgvevalIvfsp~gk~~~f~~psv 69 (212)
.+|.-.||++|+|||....|.+|-.|...+
T Consensus 134 ~~l~~~~g~~v~VIItDt~gr~~R~G~t~v 163 (245)
T PRK13293 134 EGLEELTGKKVGVIITDTNGRPFRKGQRGV 163 (245)
T ss_pred HHHHHHHCCCEEEEEEcCCCcccccCCcce
Confidence 467778999999999999999888776543
No 44
>PRK04654 sec-independent translocase; Provisional
Probab=31.89 E-value=95 Score=25.39 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=11.0
Q ss_pred hhhhhccccEEEEeeCCCC
Q 036705 41 ELSTLCGIDIAIIVFSPAN 59 (212)
Q Consensus 41 ELs~LCgvevalIvfsp~g 59 (212)
||-++.- |+||||+|..
T Consensus 8 ELLlI~V--VALlV~GPer 24 (214)
T PRK04654 8 ELTLIAV--VALVVLGPER 24 (214)
T ss_pred HHHHHHH--HHHHhcCchH
Confidence 5544433 6889999943
No 45
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.49 E-value=97 Score=26.03 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=15.8
Q ss_pred hhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHh
Q 036705 40 SELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRY 76 (212)
Q Consensus 40 ~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry 76 (212)
-=|+.|+||-+...++.|. ++-..++++++.=+.+.
T Consensus 10 ~~~~~l~~~~~~~~~~a~a-~v~~~~~~~~~~r~~~l 45 (263)
T PRK10803 10 LSLSLLVGVAAPWAAFAQA-PISSVGSGSVEDRVTQL 45 (263)
T ss_pred HHHHHHHHHhhhHHHhcCC-cHHHcCCCchHHHHHHH
Confidence 3456677754443334432 12222344554444433
No 46
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=31.39 E-value=2.3e+02 Score=21.36 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=23.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 141 PINELGLHELEQLKTAMEELKKNVEQQAN 169 (212)
Q Consensus 141 ~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~ 169 (212)
++++|+.+||..+...++..-..-+.+..
T Consensus 91 ~iE~l~~~el~~~~~~~~~~~~~~~~~~~ 119 (132)
T PF04120_consen 91 DIEDLTEEELEEIRKRYERLAEQARERHD 119 (132)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 79999999999999999877666555443
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.28 E-value=4.2e+02 Score=28.34 Aligned_cols=30 Identities=7% Similarity=0.119 Sum_probs=21.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 141 PINELGLHELEQLKTAMEELKKNVEQQANK 170 (212)
Q Consensus 141 ~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~ 170 (212)
++.+|+.++|......++..+.........
T Consensus 431 ~~~~~SdEeLe~~LenF~aklee~e~qL~e 460 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLS 460 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999888777777666655444443
No 48
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=27.56 E-value=31 Score=28.43 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=17.8
Q ss_pred hhhccccEEEEeeCCCCccccc
Q 036705 43 STLCGIDIAIIVFSPANKAFSF 64 (212)
Q Consensus 43 s~LCgvevalIvfsp~gk~~~f 64 (212)
||=+|-+.|+-+|||+|..|..
T Consensus 3 sIGtGyDls~s~fSpdGrvfQv 24 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQV 24 (254)
T ss_pred cccccccccceeeCCCCceehH
Confidence 4567888999999999987653
No 49
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.29 E-value=33 Score=28.15 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=13.2
Q ss_pred ccEEEEeeCCCCccccc
Q 036705 48 IDIAIIVFSPANKAFSF 64 (212)
Q Consensus 48 vevalIvfsp~gk~~~f 64 (212)
-+-|+-||||+|.+|..
T Consensus 4 ydraltvFSPDGhL~QV 20 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQV 20 (249)
T ss_pred cccceEEECCCCCEEee
Confidence 45688899999987653
No 50
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=27.01 E-value=4.3e+02 Score=23.11 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=16.3
Q ss_pred hhhhccccEEEEeeCCC---CcccccCCCCchhhHhHh
Q 036705 42 LSTLCGIDIAIIVFSPA---NKAFSFGHPNVDSIIDRY 76 (212)
Q Consensus 42 Ls~LCgvevalIvfsp~---gk~~~f~~psv~~Vl~Ry 76 (212)
|+--||.+|.-.+.-.. ++.|.||.-.++++.+.-
T Consensus 25 L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~ 62 (351)
T TIGR03156 25 LAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELV 62 (351)
T ss_pred HHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHH
Confidence 33333666655444332 223444555555554443
No 51
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=26.97 E-value=1.1e+02 Score=18.08 Aligned_cols=13 Identities=38% Similarity=0.509 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q 036705 147 LHELEQLKTAMEE 159 (212)
Q Consensus 147 ~eEL~~L~~~Le~ 159 (212)
++||.+|.+.||.
T Consensus 6 ieelkqll~rle~ 18 (46)
T PF08181_consen 6 IEELKQLLWRLEN 18 (46)
T ss_pred HHHHHHHHHHHHH
Confidence 5677777777774
No 52
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=26.79 E-value=31 Score=29.55 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=14.0
Q ss_pred hhhhccccEEEEeeCCC
Q 036705 42 LSTLCGIDIAIIVFSPA 58 (212)
Q Consensus 42 Ls~LCgvevalIvfsp~ 58 (212)
..-+||++||++||--.
T Consensus 182 ~~~~~~~EICLavYek~ 198 (334)
T PF06020_consen 182 GGQVSGFEICLAVYEKG 198 (334)
T ss_pred CCccccceEEeeehhhh
Confidence 34679999999999864
No 53
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=26.55 E-value=4.8e+02 Score=23.80 Aligned_cols=50 Identities=12% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCchhHHhhhHhhhhccchhhh
Q 036705 148 HELEQLKTAMEELKKNVEQQANKILIDSK--NNPSPSFARALDIIMIISRSFFEF 200 (212)
Q Consensus 148 eEL~~L~~~Le~~l~~V~~R~~~L~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~ 200 (212)
+|+..|+..++.+.+.+-..+.---.=+. .+.-| -.+|-+..+.-+|+++
T Consensus 105 ~ei~~l~~~~~~~~~~i~~~Lt~wq~vq~aRhp~RP---~~~d~I~~i~ddf~EL 156 (431)
T PLN03230 105 AQIAELEERYDQVRRELYSRLTPVQRLSVARHPNRP---TFLDHVLNMTDKWVEL 156 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCC---CHHHHHHHhhhHHhhh
Confidence 67888888887777776654443211111 12222 2345555555566654
No 54
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=25.78 E-value=1.8e+02 Score=18.21 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036705 151 EQLKTAMEELKKNVEQQANKIL 172 (212)
Q Consensus 151 ~~L~~~Le~~l~~V~~R~~~L~ 172 (212)
......++..+..|.++++.|-
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~ 56 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667777777887777764
No 55
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=25.71 E-value=1.6e+02 Score=23.15 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=22.6
Q ss_pred cCCCC-chhhHhHhhhcCCCCCCCCchhhHHHhhhhhhHHHhHHHHHHHHHHHHHHH
Q 036705 64 FGHPN-VDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEK 119 (212)
Q Consensus 64 f~~ps-v~~Vl~Ry~~~~~~~~~~~~~~~~~e~~~~~~i~~l~~q~~~l~~~le~~k 119 (212)
+-.|+ |.+.+.+-.... +. +.....+...+..++..+..+++...
T Consensus 32 ~L~P~~v~~~v~~~~~~~-~~----------~~~~~~~~~~l~~~l~~~~~el~~le 77 (180)
T PF04678_consen 32 YLRPKQVKEAVHRLLPLL-NV----------EEYQNSRERQLRKRLEELRQELAPLE 77 (180)
T ss_pred eECHHHHHHHHHHHhccc-cc----------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44574 666666665543 11 11222344555556666655555443
No 56
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=25.54 E-value=48 Score=23.62 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=21.8
Q ss_pred hhhhhhhhhccccEEEEeeCCCCcccccCC
Q 036705 37 KKASELSTLCGIDIAIIVFSPANKAFSFGH 66 (212)
Q Consensus 37 KKA~ELs~LCgvevalIvfsp~gk~~~f~~ 66 (212)
-|..||--+-||-+| =.|||+||+.+|-.
T Consensus 3 ekLdeLlqi~Gv~AA-Gefs~DGkLv~Ykg 31 (109)
T COG4831 3 EKLDELLQIKGVMAA-GEFSPDGKLVEYKG 31 (109)
T ss_pred hhHHHHhCccceeEe-ceeCCCCceEEeeC
Confidence 356788888887554 57999999888733
No 57
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.93 E-value=2.6e+02 Score=19.91 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=9.2
Q ss_pred CCCchhhHhHhhhc
Q 036705 66 HPNVDSIIDRYLAR 79 (212)
Q Consensus 66 ~psv~~Vl~Ry~~~ 79 (212)
+|.++.++..|...
T Consensus 2 ~~~~q~~~~~~q~~ 15 (110)
T TIGR02338 2 PPQVQNQLAQLQQL 15 (110)
T ss_pred CHHHHHHHHHHHHH
Confidence 36677777777654
No 58
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=24.82 E-value=47 Score=25.18 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=18.8
Q ss_pred hhhhhccccEEEEeeCCCCccccc
Q 036705 41 ELSTLCGIDIAIIVFSPANKAFSF 64 (212)
Q Consensus 41 ELs~LCgvevalIvfsp~gk~~~f 64 (212)
=+.++|||+|-++|-+-+++.-.|
T Consensus 58 L~tt~~dadvi~~v~~and~~s~f 81 (148)
T COG4917 58 LITTLQDADVIIYVHAANDPESRF 81 (148)
T ss_pred HHHHhhccceeeeeecccCccccC
Confidence 367899999999999988773333
No 59
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=24.73 E-value=25 Score=31.11 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred CcceeccccccchhhhhhhhhhhccccEEE-EeeCCCCcccccCCCCch
Q 036705 23 HLQVTFSKRRTGVFKKASELSTLCGIDIAI-IVFSPANKAFSFGHPNVD 70 (212)
Q Consensus 23 ~R~~tF~KRr~GL~KKA~ELs~LCgveval-Ivfsp~gk~~~f~~psv~ 70 (212)
.|+.+-+.=..|++|=+.=..-||+|..+| =+.+..||+-+|++|++.
T Consensus 44 ~~kr~~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 44 IRKRKMSRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp -------------------------------------------------
T ss_pred HHhhhhhhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 333344444566777667778999999999 788888999999999986
No 60
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=24.68 E-value=2.9e+02 Score=24.89 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=11.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHh
Q 036705 100 NIRELNMQLTQVLHQLEVEKKH 121 (212)
Q Consensus 100 ~i~~l~~q~~~l~~~le~~kk~ 121 (212)
.+++++..+.....+|.....+
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qk 24 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQK 24 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666655555544333
No 61
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=23.94 E-value=91 Score=25.86 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=36.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 036705 99 ANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNN 178 (212)
Q Consensus 99 ~~i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~~~s~ 178 (212)
..+..|..++..+.+.++..-++...|..... -++..+..|+.-|...-....-..+..|..++..++..+...
T Consensus 29 ~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~------eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~~qa~q 102 (234)
T cd07665 29 QEVECEEQRLRKLHAVVETLVNHRKELALNTA------LFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANN 102 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555443333322211 123334444443332212222334455666777766666554
Q ss_pred CCchh
Q 036705 179 PSPSF 183 (212)
Q Consensus 179 ~~~~~ 183 (212)
....|
T Consensus 103 d~~~f 107 (234)
T cd07665 103 DFFLL 107 (234)
T ss_pred HHHHH
Confidence 33333
No 62
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.78 E-value=4.9e+02 Score=24.05 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=16.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHhhHHHHH
Q 036705 100 NIRELNMQLTQVLHQLEVEKKHGEVMSE 127 (212)
Q Consensus 100 ~i~~l~~q~~~l~~~le~~kk~~e~L~~ 127 (212)
.+.+++.++..+..+-+.++++++.|++
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666665554
No 63
>PRK00708 sec-independent translocase; Provisional
Probab=23.66 E-value=2.4e+02 Score=23.01 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=12.2
Q ss_pred hhhhhhccccEEEEeeCCCC
Q 036705 40 SELSTLCGIDIAIIVFSPAN 59 (212)
Q Consensus 40 ~ELs~LCgvevalIvfsp~g 59 (212)
.||-++.- |+||||+|..
T Consensus 7 ~ELlvI~v--VaLvV~GPkr 24 (209)
T PRK00708 7 SELLVIAI--VLIVVVGPKD 24 (209)
T ss_pred HHHHHHHH--HHHhhcCchH
Confidence 45555543 6889999954
No 64
>PLN03237 DNA topoisomerase 2; Provisional
Probab=23.31 E-value=7.2e+02 Score=26.57 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=26.0
Q ss_pred cchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705 33 TGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLAR 79 (212)
Q Consensus 33 ~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~ 79 (212)
+||+|+ ..|.+--++ --+++|.++|+...| .++.+||..|...
T Consensus 972 ~~L~k~-~kL~~s~~~-~nm~l~d~~G~i~k~--~~~~~Il~~F~~~ 1014 (1465)
T PLN03237 972 EGLLKK-FKLTTTIST-SNMHLFDSKGVIKKY--DTPEQILEEFFHL 1014 (1465)
T ss_pred HHHHHh-hcCcceece-eEEEEEcCCCCccee--CCHHHHHHHHHHH
Confidence 466643 333333222 257788888876655 4677888888653
No 65
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=23.08 E-value=5.3e+02 Score=27.36 Aligned_cols=27 Identities=11% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705 51 AIIVFSPANKAFSFGHPNVDSIIDRYLAR 79 (212)
Q Consensus 51 alIvfsp~gk~~~f~~psv~~Vl~Ry~~~ 79 (212)
-+++|.++|+...| .++.+||+.|...
T Consensus 962 Nm~~~d~~g~i~~~--~~~~~Il~~f~~~ 988 (1388)
T PTZ00108 962 NMVLFDENGKIKKY--SDALDILKEFYLV 988 (1388)
T ss_pred eEEEEeCCCCccee--CCHHHHHHHHHHH
Confidence 57889999986665 4566888888754
No 66
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=23.00 E-value=29 Score=25.92 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=28.0
Q ss_pred eCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccc
Q 036705 18 IPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFS 63 (212)
Q Consensus 18 I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~ 63 (212)
|.++.....||.=.-..|-++.-+|+.+ |++.|+|.|+.|-
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~-----Cf~a~~~~gk~f~ 81 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKM-----CFKAYSPDGKEFK 81 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT------EEEEEETTS-EEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccc-----hhhhccccCCEEE
Confidence 4455666777777888888888899987 7899999998554
No 67
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=22.96 E-value=1.5e+02 Score=25.23 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=31.0
Q ss_pred cCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 036705 139 EAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKN 177 (212)
Q Consensus 139 ~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~~~s 177 (212)
-+.++.|+.+||.+|...|-....+|-+.....+.+.-+
T Consensus 213 rEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEKDs 251 (285)
T PF06937_consen 213 REELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQEKDS 251 (285)
T ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999988888887777776665543
No 68
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.91 E-value=4.7e+02 Score=22.18 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 036705 148 HELEQLKTAMEELKKNVEQQANKILIDSKNN 178 (212)
Q Consensus 148 eEL~~L~~~Le~~l~~V~~R~~~L~~~~~s~ 178 (212)
.++..+...|.+....+..|...+...+.+.
T Consensus 87 ~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t 117 (265)
T COG3883 87 KEIAELKENIVERQELLKKRARAMQVNGTAT 117 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Confidence 4677888888888888888888887777653
No 69
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=22.86 E-value=4.7e+02 Score=22.64 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=25.9
Q ss_pred cCCCCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhccCCCCchhHHhhh
Q 036705 142 INELGLHELEQLKTAMEELK---------------KNVEQQANKILIDSKNNPSPSFARALD 188 (212)
Q Consensus 142 l~~Ls~eEL~~L~~~Le~~l---------------~~V~~R~~~L~~~~~s~~~~~~~~~~~ 188 (212)
.+.+.-++|..+...|...+ ++|+..+..++... .+++.....+.+
T Consensus 261 ~~~~~~e~l~~la~el~~~lk~~~~vDW~~ke~~ra~~r~~Ik~~L~k~-~ypp~~~~~~~~ 321 (335)
T PF11867_consen 261 VEEMGDEELKELAKELTETLKENVTVDWTKKEDVRAKMRRAIKRLLRKY-GYPPDKQEEAVD 321 (335)
T ss_pred cccccHHHHHHHHHHHHHHhccccCcCceeCccHHHHHHHHHHHHHHHc-CCChHHHHHHHH
Confidence 34566677777777775543 34666666666654 233333333433
No 70
>PRK01770 sec-independent translocase; Provisional
Probab=22.62 E-value=1.5e+02 Score=23.48 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=11.8
Q ss_pred hhhhhhccccEEEEeeCCCC
Q 036705 40 SELSTLCGIDIAIIVFSPAN 59 (212)
Q Consensus 40 ~ELs~LCgvevalIvfsp~g 59 (212)
.||-+++- ||||||+|..
T Consensus 7 ~ELllI~v--VaLlV~GPer 24 (171)
T PRK01770 7 SELLLVFV--IGLVVLGPQR 24 (171)
T ss_pred HHHHHHHH--HHHHhcCchH
Confidence 35555543 6889999944
No 71
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=22.51 E-value=4.5e+02 Score=25.75 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHhhcc-CCCCchhHHhhhHhhhhccchhhhh
Q 036705 147 LHELEQLKTAMEE------LKKNVEQQANKILIDSK-NNPSPSFARALDIIMIISRSFFEFC 201 (212)
Q Consensus 147 ~eEL~~L~~~Le~------~l~~V~~R~~~L~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~ 201 (212)
.+|+..|...|+. .++.+...++.|-.... +.-..-+.+|+|....++|+...+-
T Consensus 246 ~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~ 307 (775)
T TIGR00763 246 KDELEKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKE 307 (775)
T ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccc
Confidence 4577777777754 55666666666655444 3444448899999999998876553
No 72
>PRK00182 tatB sec-independent translocase; Provisional
Probab=22.07 E-value=33 Score=26.76 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=18.7
Q ss_pred hhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhh
Q 036705 41 ELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLA 78 (212)
Q Consensus 41 ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~ 78 (212)
||-++. =||||||+| +++..++. .+...+..|++
T Consensus 9 EllvIl--vIaLlVfGP-erLP~~~r-~lg~~ir~~R~ 42 (160)
T PRK00182 9 EILLLL--IVGLIVIGP-ERLPRLIE-DVRAALLAART 42 (160)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHHH-HHHHHHHHHHH
Confidence 555554 368999999 55443321 24444555544
No 73
>KOG4106 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.97 E-value=20 Score=26.20 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=18.4
Q ss_pred CCCCCCCCCcccceeeeeCCCCCcceecccc
Q 036705 1 MEMKKPCAGRQKIAISKIPKKNHLQVTFSKR 31 (212)
Q Consensus 1 ~~~~~~~mgR~Ki~ik~I~n~~~R~~tF~KR 31 (212)
|++.|..|+|.=..+. .-.+.+++++|
T Consensus 1 msaarly~l~~LFs~~----av~~~s~~sp~ 27 (125)
T KOG4106|consen 1 MSAARLYMLRNLFSIT----AVRFASSDSPR 27 (125)
T ss_pred CcHHHHHHHHhhchhh----heeecccCCcc
Confidence 6777778887766665 33566677776
No 74
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=21.77 E-value=52 Score=21.79 Aligned_cols=19 Identities=11% Similarity=0.569 Sum_probs=15.7
Q ss_pred ccccEEEEeeCCCCccccc
Q 036705 46 CGIDIAIIVFSPANKAFSF 64 (212)
Q Consensus 46 CgvevalIvfsp~gk~~~f 64 (212)
-|+++|.|.|.|....|..
T Consensus 24 ~G~~~c~V~y~~~t~~F~l 42 (67)
T PF08796_consen 24 EGVEVCTVTYDQETETFEL 42 (67)
T ss_dssp TTEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEEEEECCCCeEEE
Confidence 5899999999998776654
No 75
>PRK00736 hypothetical protein; Provisional
Probab=21.75 E-value=2.4e+02 Score=18.43 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=16.6
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHhhHHH
Q 036705 96 HRNANIRELNMQLTQVLHQLEVEKKHGEVM 125 (212)
Q Consensus 96 ~~~~~i~~l~~q~~~l~~~le~~kk~~e~L 125 (212)
+....+.+||..+.+.+.+++.+.++...|
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665555444433
No 76
>PF14282 FlxA: FlxA-like protein
Probab=21.73 E-value=3.1e+02 Score=19.57 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=30.8
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036705 99 ANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILID 174 (212)
Q Consensus 99 ~~i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~ 174 (212)
..|..|++++..|..+|..+.. -.+|+.++-..-...|..-+..|...+.++..+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~---------------------~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQ---------------------DSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777766654321 134555555555555555555555555554443
No 77
>PLN03128 DNA topoisomerase 2; Provisional
Probab=21.51 E-value=6.8e+02 Score=25.96 Aligned_cols=27 Identities=11% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705 51 AIIVFSPANKAFSFGHPNVDSIIDRYLAR 79 (212)
Q Consensus 51 alIvfsp~gk~~~f~~psv~~Vl~Ry~~~ 79 (212)
-+++|.+.|+...| .++.+||..|...
T Consensus 961 nm~l~d~~~~i~ky--~~~~~il~~f~~~ 987 (1135)
T PLN03128 961 NMHLFDKDGKIKKY--DSPEDILEEFFHL 987 (1135)
T ss_pred EEEEECCCCcccCC--CCHHHHHHHHHHH
Confidence 57788888876555 4667888888754
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.21 E-value=2.5e+02 Score=18.32 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=14.5
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHhhH
Q 036705 97 RNANIRELNMQLTQVLHQLEVEKKHGE 123 (212)
Q Consensus 97 ~~~~i~~l~~q~~~l~~~le~~kk~~e 123 (212)
....+.+|+..+.....+++.++....
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666555555555544433
No 79
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=21.06 E-value=4.7e+02 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 036705 143 NELGLHELEQLKTAMEELKKNVE 165 (212)
Q Consensus 143 ~~Ls~eEL~~L~~~Le~~l~~V~ 165 (212)
|.-..+-...|...|+..+..++
T Consensus 203 d~~~~e~~~~Lr~~L~tflq~~~ 225 (325)
T PF06694_consen 203 DEEYVEKESQLRLELETFLQTAA 225 (325)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666555443
No 80
>PRK11058 GTPase HflX; Provisional
Probab=20.73 E-value=6.3e+02 Score=22.79 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=21.0
Q ss_pred hhhhhhhc---cccEEEEeeCCC---CcccccCCCCchhhHhHhh
Q 036705 39 ASELSTLC---GIDIAIIVFSPA---NKAFSFGHPNVDSIIDRYL 77 (212)
Q Consensus 39 A~ELs~LC---gvevalIvfsp~---gk~~~f~~psv~~Vl~Ry~ 77 (212)
..||.-|| |++|.-.+.-.. ++.+-||+-.++++-+.-.
T Consensus 27 ~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~ 71 (426)
T PRK11058 27 LQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVK 71 (426)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHH
Confidence 45555554 778766444322 3345556666665555443
No 81
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=20.24 E-value=44 Score=20.46 Aligned_cols=22 Identities=23% Similarity=0.665 Sum_probs=16.7
Q ss_pred hhhhhhhhhhhccccEEEEeeC
Q 036705 35 VFKKASELSTLCGIDIAIIVFS 56 (212)
Q Consensus 35 L~KKA~ELs~LCgvevalIvfs 56 (212)
|.+-+..-+-|||++..+.||-
T Consensus 2 L~~Rs~~kCELC~a~~~L~vy~ 23 (47)
T smart00782 2 LLARCESKCELCGSDSPLVVYA 23 (47)
T ss_pred hhHHcCCcccCcCCCCCceEEe
Confidence 3444556688999999998886
No 82
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=20.23 E-value=2.2e+02 Score=21.67 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.0
Q ss_pred ccccEEEEeeCCCCc--ccccCCCCch
Q 036705 46 CGIDIAIIVFSPANK--AFSFGHPNVD 70 (212)
Q Consensus 46 CgvevalIvfsp~gk--~~~f~~psv~ 70 (212)
-||+|.-|+.++... .|..+||..+
T Consensus 66 ~gV~v~~i~~d~~~~~~~YdP~hP~Ad 92 (140)
T PRK12628 66 AGVKLDGIYESDAEPHRRYDPNSPIAD 92 (140)
T ss_pred CCeEEEEEecCCCCcccccCCCCCCCC
Confidence 589999999997643 6777889764
No 83
>PF13270 DUF4061: Domain of unknown function (DUF4061)
Probab=20.20 E-value=3.2e+02 Score=19.12 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=10.4
Q ss_pred hHHHhHHHHHHHHHHHHH
Q 036705 100 NIRELNMQLTQVLHQLEV 117 (212)
Q Consensus 100 ~i~~l~~q~~~l~~~le~ 117 (212)
.|.+++.++..+.-.|..
T Consensus 37 ~IReqQE~LarlHfeL~~ 54 (90)
T PF13270_consen 37 KIREQQEKLARLHFELDS 54 (90)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 466666666665555543
No 84
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=20.15 E-value=84 Score=30.07 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=37.7
Q ss_pred cccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhh
Q 036705 31 RRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYL 77 (212)
Q Consensus 31 Rr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~ 77 (212)
--.+++++|.||++---+++.++=||... |+..+.|.|...|.-|.
T Consensus 444 ~~~e~i~t~~elTvgDtsp~~L~EySEe~-P~~Lsn~GMas~l~nYY 489 (968)
T COG5179 444 DVQEIIKTAGELTVGDTSPFSLFEYSEEE-PFFLSNPGMASLLNNYY 489 (968)
T ss_pred chhhhhccccceeccCCCceeeeeecccC-ceeecCchHHHHHHHHH
Confidence 34789999999999999999999999954 45557899887776664
No 85
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=20.03 E-value=64 Score=28.76 Aligned_cols=40 Identities=18% Similarity=0.398 Sum_probs=28.0
Q ss_pred hhhhhhhccccE--EEEeeCCCCcccccCCC-----CchhhHhHhhhcC
Q 036705 39 ASELSTLCGIDI--AIIVFSPANKAFSFGHP-----NVDSIIDRYLARN 80 (212)
Q Consensus 39 A~ELs~LCgvev--alIvfsp~gk~~~f~~p-----sv~~Vl~Ry~~~~ 80 (212)
-+-|||+||-+| |||--...| |-|++| ++++.+..|...+
T Consensus 366 ~yalSV~~~~~V~HClIy~tatG--~GFa~pyn~y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 366 CYALSVVHDGEVKHCLIYQTATG--FGFAEPYNLYSTLKELVLHYQHTS 412 (464)
T ss_pred ceEEEEEECCceeeeEEeecccc--ccccchhHHHHHHHHHHHHHhhhh
Confidence 467999998766 776555555 556666 4678888887543
No 86
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.01 E-value=2.6e+02 Score=18.06 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHH
Q 036705 102 RELNMQLTQVLHQLEVEKKHGEVMS 126 (212)
Q Consensus 102 ~~l~~q~~~l~~~le~~kk~~e~L~ 126 (212)
..++.++..+.++++..+.+++.|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~ 44 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444443
No 87
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=20.00 E-value=39 Score=21.21 Aligned_cols=37 Identities=32% Similarity=0.395 Sum_probs=27.9
Q ss_pred ccceeeeeCCCCCcceeccccccchhhhhhhhh--hhcc
Q 036705 11 QKIAISKIPKKNHLQVTFSKRRTGVFKKASELS--TLCG 47 (212)
Q Consensus 11 ~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs--~LCg 47 (212)
+|-.+--|..+....-||+--+--.-.|.+|+| +|||
T Consensus 6 kkcnvisidgkkkksdtysypklvvenktyefssfvlcg 44 (66)
T PF13082_consen 6 KKCNVISIDGKKKKSDTYSYPKLVVENKTYEFSSFVLCG 44 (66)
T ss_pred ccccEEEeccccccCCcccCceEEEeCceEEEEEEEEEc
Confidence 455566677777777888888877888888887 5777
Done!