Query 036705
Match_columns 212
No_of_seqs 151 out of 1573
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:16:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 7.8E-39 2.7E-43 223.0 1.3 79 9-88 1-79 (90)
2 1egw_A MADS box transcription 100.0 1.3E-38 4.4E-43 216.8 0.2 72 9-80 1-72 (77)
3 1hbx_A SRF, serum response fac 100.0 7.9E-38 2.7E-42 218.8 -0.2 76 3-78 5-80 (92)
4 1mnm_A Protein (MCM1 transcrip 100.0 1.2E-37 4.2E-42 220.5 -0.0 77 3-79 11-87 (100)
5 1k6o_B SRF, serum response fac 100.0 4.2E-37 1.4E-41 219.1 -0.1 74 3-76 4-77 (103)
6 1p9i_A Cortexillin I/GCN4 hybr 57.4 18 0.0006 18.7 3.4 27 148-174 2-28 (31)
7 1fxk_A Prefoldin; archaeal pro 56.3 39 0.0013 22.7 6.5 13 67-79 1-13 (107)
8 1g6u_A Domain swapped dimer; d 53.0 29 0.00099 19.6 4.8 27 143-169 15-41 (48)
9 1z56_A Ligase interacting fact 45.8 33 0.0011 27.4 5.0 53 17-80 118-177 (246)
10 2l5g_A GPS2 protein, G protein 45.3 31 0.0011 19.2 3.4 29 145-173 8-36 (38)
11 2ke4_A CDC42-interacting prote 44.0 73 0.0025 21.6 10.0 65 99-165 15-79 (98)
12 3mwp_A Nucleoprotein; structur 39.8 48 0.0016 29.1 5.5 61 107-167 54-124 (577)
13 2ic9_A Nucleocapsid protein; h 39.7 87 0.003 21.3 6.6 81 100-189 6-89 (96)
14 2cly_B ATP synthase D chain, m 38.0 69 0.0024 23.8 5.6 13 141-153 126-138 (160)
15 1t6f_A Geminin; coiled-coil, c 37.9 47 0.0016 18.3 3.4 26 101-126 9-34 (37)
16 2k48_A Nucleoprotein; viral pr 37.5 1E+02 0.0034 21.3 7.1 63 99-170 35-100 (107)
17 2l5g_B Putative uncharacterize 35.5 47 0.0016 19.0 3.3 28 145-172 2-29 (42)
18 2hv8_D RAB11 family-interactin 34.0 87 0.003 19.6 5.4 37 139-175 17-53 (64)
19 3nrf_A APAG protein; structura 33.6 7.7 0.00026 27.0 -0.3 40 19-63 22-61 (106)
20 1m2d_A [2Fe-2S] ferredoxin; th 33.2 19 0.00065 24.7 1.8 32 46-78 59-91 (110)
21 4dnd_A Syntaxin-10, SYN10; str 32.1 1.4E+02 0.0047 21.3 8.9 58 110-171 71-128 (130)
22 3tnu_A Keratin, type I cytoske 31.5 1.4E+02 0.0047 21.1 6.8 67 99-172 38-104 (131)
23 3tnu_B Keratin, type II cytosk 31.2 1.4E+02 0.0047 21.0 7.7 67 99-172 36-102 (129)
24 2phn_A F420-0:gamma-glutamyl l 30.7 6.8 0.00023 31.8 -1.1 29 41-69 138-166 (254)
25 2zvv_Y Cyclin-dependent kinase 30.3 14 0.00048 18.6 0.4 12 22-33 15-26 (26)
26 2zqm_A Prefoldin beta subunit 30.1 96 0.0033 21.0 5.1 11 68-78 7-17 (117)
27 1s94_A S-syntaxin; three helix 26.7 1.9E+02 0.0066 21.3 10.7 95 101-199 38-137 (180)
28 2rpa_A Katanin P60 ATPase-cont 25.9 17 0.00057 23.9 0.3 34 36-80 16-49 (78)
29 2ky6_A Mediator of RNA polymer 25.3 36 0.0012 25.5 2.1 20 43-62 116-135 (166)
30 3rmq_A Uncharacterized protein 25.3 15 0.00052 25.8 0.0 34 17-52 9-42 (116)
31 1j1d_B Troponin T, TNT; THIN f 25.2 1E+02 0.0035 21.3 4.3 26 141-166 38-63 (106)
32 4fi5_A Nucleoprotein; structur 25.0 1.8E+02 0.0061 20.3 6.7 22 100-121 23-44 (113)
33 3sl9_C B-cell CLL/lymphoma 9 p 24.4 97 0.0033 18.2 3.4 22 139-160 4-25 (55)
34 2wvr_A Geminin; DNA replicatio 24.4 2.5E+02 0.0085 21.7 7.0 28 101-128 117-144 (209)
35 3tso_C RAB11 family-interactin 24.0 1.5E+02 0.0051 19.1 4.8 22 142-163 11-32 (75)
36 3rrk_A V-type ATPase 116 kDa s 23.8 1.4E+02 0.0048 24.6 5.9 12 68-79 200-211 (357)
37 2ic6_A Nucleocapsid protein; h 23.5 1.6E+02 0.0054 19.2 6.9 23 99-121 5-27 (78)
38 4gfh_A DNA topoisomerase 2; to 23.1 4.7E+02 0.016 25.8 10.0 43 33-79 958-1000(1177)
39 2w6b_A RHO guanine nucleotide 22.8 1.3E+02 0.0046 18.1 5.2 30 99-128 17-46 (56)
40 2yy0_A C-MYC-binding protein; 21.7 1.4E+02 0.0047 17.8 4.9 25 101-125 21-45 (53)
41 3fx7_A Putative uncharacterize 21.5 1.8E+02 0.0063 19.6 4.9 30 145-174 6-35 (94)
42 2jo8_A Serine/threonine-protei 21.3 98 0.0034 18.4 3.1 23 140-162 5-27 (51)
43 3efg_A Protein SLYX homolog; x 20.5 1.8E+02 0.0062 18.7 4.8 25 97-121 26-50 (78)
44 3teq_A Stromal interaction mol 20.1 2.2E+02 0.0074 19.5 7.8 31 139-170 56-86 (101)
45 1dd4_C 50S ribosomal protein L 20.0 64 0.0022 18.2 2.0 20 141-160 9-28 (40)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=7.8e-39 Score=222.99 Aligned_cols=79 Identities=41% Similarity=0.727 Sum_probs=74.3
Q ss_pred CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhcCCCCCCCCc
Q 036705 9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARNSNPPSESG 88 (212)
Q Consensus 9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~~~~~~~~~~ 88 (212)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|++|+|+.||+||...+ ++++..+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~-~~~~~~~ 79 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN-EPHESRT 79 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCC-SCCCEEC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcC-cccccCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987 5554333
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.3e-38 Score=216.75 Aligned_cols=72 Identities=43% Similarity=0.768 Sum_probs=70.2
Q ss_pred CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhcC
Q 036705 9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARN 80 (212)
Q Consensus 9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~~ 80 (212)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|++|+|+.||+||...+
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~ 72 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC-
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999876
No 3
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=7.9e-38 Score=218.76 Aligned_cols=76 Identities=36% Similarity=0.493 Sum_probs=72.5
Q ss_pred CCCCCCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhh
Q 036705 3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLA 78 (212)
Q Consensus 3 ~~~~~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~ 78 (212)
..|++|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||++|..
T Consensus 5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999998754
No 4
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.2e-37 Score=220.52 Aligned_cols=77 Identities=35% Similarity=0.541 Sum_probs=71.2
Q ss_pred CCCCCCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705 3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLAR 79 (212)
Q Consensus 3 ~~~~~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~ 79 (212)
..+++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|++..|+++|...
T Consensus 11 ~~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 11 NNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp ----CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred CCCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999653
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=4.2e-37 Score=219.13 Aligned_cols=74 Identities=36% Similarity=0.510 Sum_probs=71.3
Q ss_pred CCCCCCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHh
Q 036705 3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRY 76 (212)
Q Consensus 3 ~~~~~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry 76 (212)
..|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+++
T Consensus 4 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 4 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999985
No 6
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=57.39 E-value=18 Score=18.66 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036705 148 HELEQLKTAMEELKKNVEQQANKILID 174 (212)
Q Consensus 148 eEL~~L~~~Le~~l~~V~~R~~~L~~~ 174 (212)
++|+.|...|+.--+.+..+.++|+..
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777643
No 7
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=56.31 E-value=39 Score=22.74 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=8.7
Q ss_pred CCchhhHhHhhhc
Q 036705 67 PNVDSIIDRYLAR 79 (212)
Q Consensus 67 psv~~Vl~Ry~~~ 79 (212)
|.++..+.+|...
T Consensus 1 ~~~Q~~i~~f~~l 13 (107)
T 1fxk_A 1 QNVQHQLAQFQQL 13 (107)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 5667777777654
No 8
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=52.98 E-value=29 Score=19.60 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 143 NELGLHELEQLKTAMEELKKNVEQQAN 169 (212)
Q Consensus 143 ~~Ls~eEL~~L~~~Le~~l~~V~~R~~ 169 (212)
++.|.+||..|+..|..+-+++..-+.
T Consensus 15 egfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889998888877666555544333
No 9
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=45.76 E-value=33 Score=27.42 Aligned_cols=53 Identities=15% Similarity=0.379 Sum_probs=8.7
Q ss_pred eeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCC--Cc--ccccCCC---CchhhHhHhhhcC
Q 036705 17 KIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPA--NK--AFSFGHP---NVDSIIDRYLARN 80 (212)
Q Consensus 17 ~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~--gk--~~~f~~p---sv~~Vl~Ry~~~~ 80 (212)
.|++...-++|+.||-.|+..|..+|+ +.|+ +. +|.|+.. .+-.+-++|.+..
T Consensus 118 ~iev~~~~~itmrkri~~Itqrlg~lt-----------L~~~~~~eIdLFewA~~L~q~i~~ln~k~~~~E 177 (246)
T 1z56_A 118 RMQDDEVWKVVMELESSAIIRKIAELT-----------LHPVKKGEIDLFEMADKLYKDICCVNDSYRNIK 177 (246)
T ss_dssp ----------------------------------------------------CTTSGGGTTHHHHHHHHTT
T ss_pred CceeCCEEEEEEeehhhHHHhhheeEE-----------eecCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566668999999999999988886 3333 22 6666432 3456667776653
No 10
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.33 E-value=31 Score=19.18 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036705 145 LGLHELEQLKTAMEELKKNVEQQANKILI 173 (212)
Q Consensus 145 Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~ 173 (212)
++++|..+-...++..+..+++.+.+|+.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677777777777777764
No 11
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=44.00 E-value=73 Score=21.64 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=45.2
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHH
Q 036705 99 ANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVE 165 (212)
Q Consensus 99 ~~i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~ 165 (212)
.+...|..++.++..+++++....+-|.+|...-....-+| +...+ ..+|.+....|+.+...+.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~G-D~~s~-~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMG-DPASL-EPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGC-CGGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999888888888876633222233 33333 5677777777776665543
No 12
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=39.79 E-value=48 Score=29.09 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhc-ccc---------ccCccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036705 107 QLTQVLHQLEVEKKHGEVMSEIRKASRS-QCW---------WEAPINELGLHELEQLKTAMEELKKNVEQQ 167 (212)
Q Consensus 107 q~~~l~~~le~~kk~~e~L~~~~~~~~~-~~~---------~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R 167 (212)
++.+.+..+.++|.-...|.+++..++. ..+ .--.+.+|+-+||.+|..-||.++++|...
T Consensus 54 ~Vs~VQR~mRK~KR~D~DL~kLRDLNkeVd~Lm~mkS~Q~~~vLkvG~LskdeLm~LasDLeKLK~KV~rt 124 (577)
T 3mwp_A 54 EVSNVQRLMRKERRDDNDLKRLRDLNQAVNNLVELKSTQQKSILRVGTLTSDDLLILAADLEKLKSKVIRT 124 (577)
T ss_dssp HHHHHHHHHHCSSEEHHHHHHHHHHHHHHHHHCSCBCCCCCEEECSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhhhhcccceEEecCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555555555444455554433221 111 122689999999999999999999998643
No 13
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=39.72 E-value=87 Score=21.26 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=35.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036705 100 NIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELG---LHELEQLKTAMEELKKNVEQQANKILIDSK 176 (212)
Q Consensus 100 ~i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls---~eEL~~L~~~Le~~l~~V~~R~~~L~~~~~ 176 (212)
.+++|+..+.....+|.....+.+...... +.+.|+++ +..-..-...|+.++..+...+......+.
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~---------e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~k 76 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAV---------ELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQK 76 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566777777777666665443332222211 23444444 344444445555555555555555555544
Q ss_pred CCCCchhHHhhhH
Q 036705 177 NNPSPSFARALDI 189 (212)
Q Consensus 177 s~~~~~~~~~~~~ 189 (212)
+...+..+-=+++
T Consensus 77 ~~~k~~DpTG~Ep 89 (96)
T 2ic9_A 77 LASKPVDPTGIEP 89 (96)
T ss_dssp C------------
T ss_pred cccCCCCCCCCCC
Confidence 4444333333333
No 14
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=38.01 E-value=69 Score=23.81 Aligned_cols=13 Identities=15% Similarity=0.731 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHH
Q 036705 141 PINELGLHELEQL 153 (212)
Q Consensus 141 ~l~~Ls~eEL~~L 153 (212)
++++|+++|+..-
T Consensus 126 P~~~mT~dd~~~a 138 (160)
T 2cly_B 126 PFDQMTIEDLNEV 138 (160)
T ss_dssp -------------
T ss_pred ChHhCCHHHHHHh
Confidence 7888888877543
No 15
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=37.89 E-value=47 Score=18.26 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHH
Q 036705 101 IRELNMQLTQVLHQLEVEKKHGEVMS 126 (212)
Q Consensus 101 i~~l~~q~~~l~~~le~~kk~~e~L~ 126 (212)
...|+..+++...++..++.+++.|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34566677777777777666666554
No 16
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.54 E-value=1e+02 Score=21.31 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=32.7
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHH---HHHHHHHHHHHHHHH
Q 036705 99 ANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKT---AMEELKKNVEQQANK 170 (212)
Q Consensus 99 ~~i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~---~Le~~l~~V~~R~~~ 170 (212)
+.+++|+..+.....+|.....+.+...+- ++.+.|+++..-+..-.. .|+.++..+...+..
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~---------~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKA---------VEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888887777776654443322222 133555555544444443 344444444444333
No 17
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.53 E-value=47 Score=18.99 Aligned_cols=28 Identities=32% Similarity=0.233 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 145 LGLHELEQLKTAMEELKKNVEQQANKIL 172 (212)
Q Consensus 145 Ls~eEL~~L~~~Le~~l~~V~~R~~~L~ 172 (212)
++-+||.+=...++.=..+++++++.|.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556676666666666666666666653
No 18
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=33.98 E-value=87 Score=19.60 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=29.2
Q ss_pred cCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036705 139 EAPINELGLHELEQLKTAMEELKKNVEQQANKILIDS 175 (212)
Q Consensus 139 ~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~~ 175 (212)
-..++++|.+||.+....-++....++.-++.|+..=
T Consensus 17 Aae~~~~s~deL~~~l~eqee~n~~Le~YID~LL~~I 53 (64)
T 2hv8_D 17 AAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVAI 53 (64)
T ss_dssp HTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999888887877778888888876653
No 19
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=33.62 E-value=7.7 Score=27.02 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccc
Q 036705 19 PKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFS 63 (212)
Q Consensus 19 ~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~ 63 (212)
.++.....||.=.-..|.++.-+|+. .|++.|+|.|+-|-
T Consensus 22 ~~k~~ytktFdV~vaNl~~~~idLsk-----~C~~a~~~~gkef~ 61 (106)
T 3nrf_A 22 GDKHFRTQAFKVRLVNAAKSEISLKN-----SCLVAQSAAGQSFR 61 (106)
T ss_dssp TTEEEEEEEEEEEEECCSSSCEECTT-----CEEEEEETTSCEEE
T ss_pred CCeeEEEEEEEEEEecCCCCccccch-----hhheeeCcCCCEEE
Confidence 44455566777778888899999995 46999999998654
No 20
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=33.23 E-value=19 Score=24.73 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=21.4
Q ss_pred ccccEEEEeeCCCCcccccCCC-CchhhHhHhhh
Q 036705 46 CGIDIAIIVFSPANKAFSFGHP-NVDSIIDRYLA 78 (212)
Q Consensus 46 CgvevalIvfsp~gk~~~f~~p-sv~~Vl~Ry~~ 78 (212)
|+-.-.|+|+ |+|..|...+| ++.+||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 4444456666 88876666666 48899998764
No 21
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.05 E-value=1.4e+02 Score=21.29 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 110 QVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKI 171 (212)
Q Consensus 110 ~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L 171 (212)
+|...++..+...+.|++........ +..+ +|+..|+..-...+......|..=+++|
T Consensus 71 EL~~~l~sie~dLeDLe~sI~ivE~n---p~kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 71 ELRNGLRSIEWDLEDLEETIGIVEAN---PGKF-KLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---HHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---HHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444445555443332211 1123 4888899888888888888877655554
No 22
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.46 E-value=1.4e+02 Score=21.11 Aligned_cols=67 Identities=10% Similarity=0.177 Sum_probs=35.6
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 99 ANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKIL 172 (212)
Q Consensus 99 ~~i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~ 172 (212)
..+.+++..+..+..+++..+.....|.......... .++.+.+++.....|+.-+..++..+...+
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~-------~~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR-------YCMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888888877766655555433221111 012234555555556666666666555543
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.21 E-value=1.4e+02 Score=21.03 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=38.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 99 ANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKIL 172 (212)
Q Consensus 99 ~~i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~ 172 (212)
..+.+++..+..+..+++..+.....|.......... .++.+.+++.....|+.-+..++..+...+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~-------~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR-------GELALKDARNKLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4577788888888888887776666665433322111 012344555555556666666666555543
No 24
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=30.68 E-value=6.8 Score=31.75 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=23.7
Q ss_pred hhhhhccccEEEEeeCCCCcccccCCCCc
Q 036705 41 ELSTLCGIDIAIIVFSPANKAFSFGHPNV 69 (212)
Q Consensus 41 ELs~LCgvevalIvfsp~gk~~~f~~psv 69 (212)
+|.-.+|++|+|||+.+.|++|..|.|.+
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~v 166 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVGF 166 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCccc
Confidence 45578899999999999998887776543
No 25
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=30.25 E-value=14 Score=18.55 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=9.0
Q ss_pred CCcceecccccc
Q 036705 22 NHLQVTFSKRRT 33 (212)
Q Consensus 22 ~~R~~tF~KRr~ 33 (212)
+.|++.|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 567888888874
No 26
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.13 E-value=96 Score=21.04 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=5.0
Q ss_pred CchhhHhHhhh
Q 036705 68 NVDSIIDRYLA 78 (212)
Q Consensus 68 sv~~Vl~Ry~~ 78 (212)
.+...+.+|..
T Consensus 7 e~Q~~i~~~~~ 17 (117)
T 2zqm_A 7 QVQAMLGQLES 17 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444555543
No 27
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=26.72 E-value=1.9e+02 Score=21.26 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=50.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----
Q 036705 101 IRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSK---- 176 (212)
Q Consensus 101 i~~l~~q~~~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~~~---- 176 (212)
+...-.++..+...++........|..++...-. ...-+.---.+|..+...+-.+-+.|+.++..|-..-.
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~----~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 113 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILS----APQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH 113 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344455666666666666665556655543111 11111222378888888888888888888888754311
Q ss_pred -CCCCchhHHhhhHhhhhccchhh
Q 036705 177 -NNPSPSFARALDIIMIISRSFFE 199 (212)
Q Consensus 177 -s~~~~~~~~~~~~~~~~~~~~~~ 199 (212)
...++....--.+...+.+.|-.
T Consensus 114 ~~~~s~~~Rir~~q~~~L~~kf~~ 137 (180)
T 1s94_A 114 SNKSSADLRIRKTQYSTISRKFVE 137 (180)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 11222233444566666666544
No 28
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.89 E-value=17 Score=23.88 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=27.0
Q ss_pred hhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhcC
Q 036705 36 FKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARN 80 (212)
Q Consensus 36 ~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~~ 80 (212)
.|+|.|.+.+++=+.|++.|.. +..-|+||...-
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~~~ 49 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHHhc
Confidence 5889999999998888877754 666788887654
No 29
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=25.34 E-value=36 Score=25.54 Aligned_cols=20 Identities=20% Similarity=0.663 Sum_probs=16.6
Q ss_pred hhhccccEEEEeeCCCCccc
Q 036705 43 STLCGIDIAIIVFSPANKAF 62 (212)
Q Consensus 43 s~LCgvevalIvfsp~gk~~ 62 (212)
+.-|++.|-+++|||+.+.|
T Consensus 116 ~~~ceiKvLiLlYs~~k~af 135 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIF 135 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSE
T ss_pred CCCcceEEEEEEEcCCccee
Confidence 45699999999999987754
No 30
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=25.33 E-value=15 Score=25.78 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=19.0
Q ss_pred eeCCCCCcceeccccccchhhhhhhhhhhccccEEE
Q 036705 17 KIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAI 52 (212)
Q Consensus 17 ~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgveval 52 (212)
|..-+-.|.+.=.-|- -.-=-..+.+|||++|-.
T Consensus 9 WQQAdGrRHayDt~r~--~p~~G~~ftaLCG~~VTp 42 (116)
T 3rmq_A 9 WQQADGKRHVYDTARH--RVQAGRPFTALCGETVTP 42 (116)
T ss_dssp EEEETTEEEEEETTTC--CCCTTCCEECTTSCEECC
T ss_pred ccccCCcccccccccC--CCCCCCccccccCCeecC
Confidence 4444445555444332 011127899999999864
No 31
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.18 E-value=1e+02 Score=21.31 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=20.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 036705 141 PINELGLHELEQLKTAMEELKKNVEQ 166 (212)
Q Consensus 141 ~l~~Ls~eEL~~L~~~Le~~l~~V~~ 166 (212)
+|++|+.++|.++-..|-..+..+.+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEe 63 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEA 63 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999888888766665544
No 32
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.99 E-value=1.8e+02 Score=20.28 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=14.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHh
Q 036705 100 NIRELNMQLTQVLHQLEVEKKH 121 (212)
Q Consensus 100 ~i~~l~~q~~~l~~~le~~kk~ 121 (212)
.+++|+..+.....+|.....+
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQK 44 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQK 44 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777654444
No 33
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=24.39 E-value=97 Score=18.15 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=15.5
Q ss_pred cCccCCCCHHHHHHHHHHHHHH
Q 036705 139 EAPINELGLHELEQLKTAMEEL 160 (212)
Q Consensus 139 ~~~l~~Ls~eEL~~L~~~Le~~ 160 (212)
+++-++||.|+|.--+..|..+
T Consensus 4 ~~n~~gls~eqlehrerslqtl 25 (55)
T 3sl9_C 4 GENPDGLSQEQLEHRERSLQTL 25 (55)
T ss_dssp ---CCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcccCHHHHHHHHHHHHHH
Confidence 5678999999998887776654
No 34
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.39 E-value=2.5e+02 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=14.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q 036705 101 IRELNMQLTQVLHQLEVEKKHGEVMSEI 128 (212)
Q Consensus 101 i~~l~~q~~~l~~~le~~kk~~e~L~~~ 128 (212)
+..|+..+..+..++..+++.++.|+.+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444
No 35
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=24.04 E-value=1.5e+02 Score=19.11 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=10.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 036705 142 INELGLHELEQLKTAMEELKKN 163 (212)
Q Consensus 142 l~~Ls~eEL~~L~~~Le~~l~~ 163 (212)
...++-+||.++.-.++..+..
T Consensus 11 y~~ltreELi~l~lk~~~~l~~ 32 (75)
T 3tso_C 11 YRSLTYEEVLQELVKHKELLRR 32 (75)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHH
Confidence 4455566665555555444333
No 36
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=23.85 E-value=1.4e+02 Score=24.56 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=7.2
Q ss_pred CchhhHhHhhhc
Q 036705 68 NVDSIIDRYLAR 79 (212)
Q Consensus 68 sv~~Vl~Ry~~~ 79 (212)
.+++|++.|.-.
T Consensus 200 ~v~~il~s~~f~ 211 (357)
T 3rrk_A 200 AARSSLSRLGLA 211 (357)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHHHHCCCe
Confidence 366777766543
No 37
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.52 E-value=1.6e+02 Score=19.18 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=14.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHh
Q 036705 99 ANIRELNMQLTQVLHQLEVEKKH 121 (212)
Q Consensus 99 ~~i~~l~~q~~~l~~~le~~kk~ 121 (212)
..+++|+..+.....+|.....+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QK 27 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQK 27 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777654433
No 38
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=23.10 E-value=4.7e+02 Score=25.76 Aligned_cols=43 Identities=16% Similarity=0.414 Sum_probs=27.0
Q ss_pred cchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705 33 TGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLAR 79 (212)
Q Consensus 33 ~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~ 79 (212)
++|+|.- .|.+-.++- -+++|.+.|++..| -++.+||..|...
T Consensus 958 ~~L~k~t-~L~~s~~~~-Nm~~~d~~g~i~k~--~~l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERF-KLISPISLM-NMVAFDPHGKIKKY--NSVNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHT-TCEEEECCS-CCEEECTTSCEEEC--SSHHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecce-EEEEEcCCCCccCc--CCHHHHHHHHHHH
Confidence 3455443 344444432 57889998886554 3578899988754
No 39
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.82 E-value=1.3e+02 Score=18.09 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=15.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q 036705 99 ANIRELNMQLTQVLHQLEVEKKHGEVMSEI 128 (212)
Q Consensus 99 ~~i~~l~~q~~~l~~~le~~kk~~e~L~~~ 128 (212)
+.+.+|++...++..-++.+++....|+.+
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444444443
No 40
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.65 E-value=1.4e+02 Score=17.78 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=12.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHH
Q 036705 101 IRELNMQLTQVLHQLEVEKKHGEVM 125 (212)
Q Consensus 101 i~~l~~q~~~l~~~le~~kk~~e~L 125 (212)
+..|..+..+++.+++.++++.+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444443
No 41
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=21.52 E-value=1.8e+02 Score=19.56 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036705 145 LGLHELEQLKTAMEELKKNVEQQANKILID 174 (212)
Q Consensus 145 Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~ 174 (212)
.+++||..|...|+.-...+++....|...
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~ 35 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNH 35 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888877777554
No 42
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=21.33 E-value=98 Score=18.45 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=17.9
Q ss_pred CccCCCCHHHHHHHHHHHHHHHH
Q 036705 140 APINELGLHELEQLKTAMEELKK 162 (212)
Q Consensus 140 ~~l~~Ls~eEL~~L~~~Le~~l~ 162 (212)
+-+..||.+||.+....|+.-+.
T Consensus 5 ~fLk~ls~eEL~~rl~~Ld~~Me 27 (51)
T 2jo8_A 5 EFLKSWTVEDLQKRLLALDPMME 27 (51)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHccHHHH
Confidence 35778899999988888776554
No 43
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.45 E-value=1.8e+02 Score=18.71 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=12.0
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHh
Q 036705 97 RNANIRELNMQLTQVLHQLEVEKKH 121 (212)
Q Consensus 97 ~~~~i~~l~~q~~~l~~~le~~kk~ 121 (212)
....+.+||..+...+.+++..+..
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~q 50 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAEL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444433
No 44
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=20.07 E-value=2.2e+02 Score=19.47 Aligned_cols=31 Identities=13% Similarity=0.386 Sum_probs=22.6
Q ss_pred cCccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 036705 139 EAPINELGLHELEQLKTAMEELKKNVEQQANK 170 (212)
Q Consensus 139 ~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~ 170 (212)
+..+|+++ ..+.+....|++.-..+++|...
T Consensus 56 s~slD~vD-~~Il~Ak~aL~evt~~l~Er~~R 86 (101)
T 3teq_A 56 SSSLDDVD-HKILTAKQALSEATAALRERLHR 86 (101)
T ss_dssp CGGGGGTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788877 55667778888888777777654
No 45
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=20.01 E-value=64 Score=18.16 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.5
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 036705 141 PINELGLHELEQLKTAMEEL 160 (212)
Q Consensus 141 ~l~~Ls~eEL~~L~~~Le~~ 160 (212)
.|.+|++-|+.+|.+.|++.
T Consensus 9 ~i~~lTvlE~~eLvk~leek 28 (40)
T 1dd4_C 9 AIEKLTVSELAELVKKLEDK 28 (40)
T ss_dssp HHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHH
Confidence 57889999999999999865
Done!