BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036706
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 137/435 (31%), Positives = 202/435 (46%), Gaps = 60/435 (13%)
Query: 3 VEIISKEFIKPSSPTPLHLKTYKLSLLDQLHDHCYPPVSLYYPLKQDTELSISSTDIDQI 62
+E +S+E I PSSPTP LK YK+S LDQL C+ P L+YP D+ L + T
Sbjct: 5 MEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQT----- 59
Query: 63 VXXXXXXXXXXXXETLSSFYPLAGKMKDKLSVDCNDEGIYFAEARAKCTLNEFLNRPDLS 122
+ L+ FYPLAG++ SVDCND G+ F EAR + L++ +
Sbjct: 60 ----SQHLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQN---- 111
Query: 123 LVIFKFHPVVGNEQRQSKEIAGAHV-GKIQVTR----------FSCGGLVICACILHMVA 171
VV E+ + A+ GKI+V F CGG I + H +A
Sbjct: 112 --------VVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIA 163
Query: 172 DGVTLGSFLMSWAARAGKNIGEDTSICPNYEISSL-FPQNDHTYPREATAFSKSGKFVVR 230
D ++L +FL +W A GE + PN+++++ FP D+T E V++
Sbjct: 164 DVLSLATFLNAWTATCR---GETEIVLPNFDLAARHFPPVDNTPSPE---LVPDENVVMK 217
Query: 231 RFVFDAQAIANLKAKATTSSTSLQNPSRVEVVTALISKRIMAAFKAKSGSYKXXXXXXXX 290
RFVFD + I L+A+A+++S +N SRV++V A I K ++ +AK G+
Sbjct: 218 RFVFDKEKIGALRAQASSASEE-KNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAV 276
Query: 291 XXXXXXXXXXSENSFGNFVWNADALCKDHDDEVELD--GLVWKLRESFTKVVKRLQGDGE 348
+ GN A L D E + D L+ LR S K +
Sbjct: 277 NLRSRMNPPLPHYAMGNI---ATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELL 333
Query: 349 GSLISLCEGIKDENKEVFADAKDRISFSSVCKFPFYDIDFGWGKPIWMNFTSFDGSIVQF 408
+ L E + ++ +SF+S C+ FYD+DFGWGKP+ T+F
Sbjct: 334 KGMTCLYE----------LEPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKR---- 379
Query: 409 ANFVILSDTRSGDGI 423
N +L DTRSGDG+
Sbjct: 380 -NAALLMDTRSGDGV 393
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 151/370 (40%), Gaps = 45/370 (12%)
Query: 76 ETLSSFYPLAGKMK----DKLSVDCNDEGIYFAEARAKCTLNEFLN-RPDLSLVIFKFHP 130
L FYP+AG++K ++ ++CN EG+ F EA + +++F + P L L + P
Sbjct: 67 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR--RLIP 124
Query: 131 VVGNEQRQSKEIAGAHVGKIQVTRFSCGGLVICACILHMVADGVTLGSFLMSWAARAGKN 190
V S+ I+ + +QVT F CGG+ + + H ADG + F+ SW+ A
Sbjct: 125 AVD----YSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR-- 178
Query: 191 IGEDTSICPNYEISSLF------PQNDHT--YPREATAFSKSG-------KFVVRRFVFD 235
G D ++ P + + L PQ H P A A S + V F
Sbjct: 179 -GLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLT 237
Query: 236 AQAIANLKAKATTSSTSLQNPSRVEVVTALISKRIMAAFKAKSGSY-KXXXXXXXXXXXX 294
+ I+ LKAK+ ++ S E++ + + A KA+ +
Sbjct: 238 REQISALKAKSKEDGNTISY-SSYEMLAGHVWR---CACKARGLEVDQGTKLYIATDGRA 293
Query: 295 XXXXXXSENSFGNFVWNADALCKDHDDEVELDGLVWKLRESFTKVVKRLQGDGEGSLISL 354
FGN ++ A + D E + VW + R+ D S +
Sbjct: 294 RLRPSLPPGYFGNVIFTATPIAIAGDLEFK---PVWYAASKIHDALARMDNDYLRSALDY 350
Query: 355 CEGIKDENKEVFADAKD----RISFSSVCKFPFYDIDFGWGKPIWMNFTSFDGSIVQFAN 410
E ++ + K + A + +S + P +D DFGWG+PI+M G + +
Sbjct: 351 LE-LQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMG---PGGIAYEGLS 406
Query: 411 FVILSDTRSG 420
F++ S T G
Sbjct: 407 FILPSPTNDG 416
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 150/370 (40%), Gaps = 45/370 (12%)
Query: 76 ETLSSFYPLAGKMK----DKLSVDCNDEGIYFAEARAKCTLNEFLN-RPDLSLVIFKFHP 130
L FYP+AG++K ++ ++CN EG+ F EA + +++F + P L L + P
Sbjct: 64 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR--RLIP 121
Query: 131 VVGNEQRQSKEIAGAHVGKIQVTRFSCGGLVICACILHMVADGVTLGSFLMSWAARAGKN 190
V S+ I+ + +QVT F CGG+ + + H ADG + F+ SW+ A
Sbjct: 122 AVD----YSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR-- 175
Query: 191 IGEDTSICPNYEISSLF------PQNDHTYPREATAFSKSGK---------FVVRRFVFD 235
G D ++ P + + L PQ H + A S + V F
Sbjct: 176 -GLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLT 234
Query: 236 AQAIANLKAKATTSSTSLQNPSRVEVVTALISKRIMAAFKAKSGSY-KXXXXXXXXXXXX 294
+ I+ LKAK+ ++ S E++ + + A KA+ +
Sbjct: 235 REQISALKAKSKEDGNTISY-SSYEMLAGHVWR---CACKARGLEVDQGTKLYIATDGRA 290
Query: 295 XXXXXXSENSFGNFVWNADALCKDHDDEVELDGLVWKLRESFTKVVKRLQGDGEGSLISL 354
FGN ++ A + D E + VW + R+ D S +
Sbjct: 291 RLRPSLPPGYFGNVIFTATPIAIAGDLEFK---PVWYAASKIHDALARMDNDYLRSALDY 347
Query: 355 CEGIKDENKEVFADAKD----RISFSSVCKFPFYDIDFGWGKPIWMNFTSFDGSIVQFAN 410
E ++ + K + A + +S + P +D DFGWG+PI+M G + +
Sbjct: 348 LE-LQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMG---PGGIAYEGLS 403
Query: 411 FVILSDTRSG 420
F++ S T G
Sbjct: 404 FILPSPTNDG 413
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 150/370 (40%), Gaps = 45/370 (12%)
Query: 76 ETLSSFYPLAGKMK----DKLSVDCNDEGIYFAEARAKCTLNEFLN-RPDLSLVIFKFHP 130
L FYP+AG++K ++ ++CN EG+ F EA + +++F + P L L + P
Sbjct: 67 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR--RLIP 124
Query: 131 VVGNEQRQSKEIAGAHVGKIQVTRFSCGGLVICACILHMVADGVTLGSFLMSWAARAGKN 190
V S+ I+ + +QVT F GG+ + + H ADG + F+ SW+ A
Sbjct: 125 AVD----YSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMAR-- 178
Query: 191 IGEDTSICPNYEISSLF------PQNDHT--YPREATAFSKSG-------KFVVRRFVFD 235
G D ++ P + + L PQ H P A A S + V F
Sbjct: 179 -GLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLT 237
Query: 236 AQAIANLKAKATTSSTSLQNPSRVEVVTALISKRIMAAFKAKSGSY-KXXXXXXXXXXXX 294
+ I+ LKAK+ ++ S E++ + + A KA+ +
Sbjct: 238 REQISALKAKSKEDGNTISY-SSYEMLAGHVWR---CACKARGLEVDQGTKLYIATDGRA 293
Query: 295 XXXXXXSENSFGNFVWNADALCKDHDDEVELDGLVWKLRESFTKVVKRLQGDGEGSLISL 354
FGN ++ A + D E + VW + R+ D S +
Sbjct: 294 RLRPSLPPGYFGNVIFTATPIAIAGDLEFK---PVWYAASKIHDALARMDNDYLRSALDY 350
Query: 355 CEGIKDENKEVFADAK----DRISFSSVCKFPFYDIDFGWGKPIWMNFTSFDGSIVQFAN 410
E ++ + K + A + +S + P +D DFGWG+PI+M G + +
Sbjct: 351 LE-LQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMG---PGGIAYEGLS 406
Query: 411 FVILSDTRSG 420
F++ S T G
Sbjct: 407 FILPSPTNDG 416
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 128/358 (35%), Gaps = 50/358 (13%)
Query: 77 TLSSFYPLAGKM-----KDKLSVDCNDEGIYFAEARAKCTL--NEFL-NRPDLSLVIFKF 128
TL FYP GK+ K C EG A A+C L NE N P +
Sbjct: 72 TLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCDKFYDL 131
Query: 129 HPVVGNEQRQSKEIAGAHVGKIQVTRFSCGGLVICACILHMVADGVTLGSFLMSWA--AR 186
P++G R S I + +QVT F G+ I H + D T FL +W AR
Sbjct: 132 VPILGESTRLSDCIK-IPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIAR 190
Query: 187 AGKNIGEDTSICPN-----YEISSLFPQNDHTYPREATAFSKSGKFVVRR---------- 231
+G N D S N Y+ +P D Y + A S + +V +
Sbjct: 191 SGNN---DESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRA 247
Query: 232 -FVFDAQAIANLKAKATTSSTSLQNPSRVEVVTALISKRIMAAFKAKSGSYKXXXXXXXX 290
F+ I LK + +L+ S V A I I AKS + K
Sbjct: 248 TFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCI-----AKSRNDKLQLFGFPI 302
Query: 291 XXXXXXXXXXSENSFGNFVWNADALCKDHDDEVELDGLVWKLRESFTKVVKRLQGDGEGS 350
FGN V A+ K + L G +E F K + + +
Sbjct: 303 DRRARMKPPIPTAYFGNCVGGCAAIAKTN----LLIG-----KEGFITAAKLIGENLHKT 353
Query: 351 LISLCEGIKDENKEVFAD------AKDRISFSSVCKFPFYDIDFGWGKPIWMNFTSFD 402
L +G+ ++ E F D S K FYD+DFGWGKP + S D
Sbjct: 354 LTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSID 411
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 128/358 (35%), Gaps = 50/358 (13%)
Query: 77 TLSSFYPLAGKM-----KDKLSVDCNDEGIYFAEARAKCTL--NEFL-NRPDLSLVIFKF 128
TL FYP GK+ K C EG A A+C L NE N P +
Sbjct: 72 TLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCDKFYDL 131
Query: 129 HPVVGNEQRQSKEIAGAHVGKIQVTRFSCGGLVICACILHMVADGVTLGSFLMSWA--AR 186
P++G R S I + +QVT F G+ I H + D T FL +W AR
Sbjct: 132 VPILGESTRLSDCIK-IPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIAR 190
Query: 187 AGKNIGEDTSICPN-----YEISSLFPQNDHTYPREATAFSKSGKFVVRR---------- 231
+G N D S N Y+ +P D Y + A S + +V +
Sbjct: 191 SGNN---DESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRA 247
Query: 232 -FVFDAQAIANLKAKATTSSTSLQNPSRVEVVTALISKRIMAAFKAKSGSYKXXXXXXXX 290
F+ I LK + +L+ S V A I I AKS + K
Sbjct: 248 TFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCI-----AKSRNDKLQLFGFPI 302
Query: 291 XXXXXXXXXXSENSFGNFVWNADALCKDHDDEVELDGLVWKLRESFTKVVKRLQGDGEGS 350
FGN V A+ K + L G +E F K + + +
Sbjct: 303 DRRARXKPPIPTAYFGNCVGGCAAIAKTN----LLIG-----KEGFITAAKLIGENLHKT 353
Query: 351 LISLCEGIKDENKEVFAD------AKDRISFSSVCKFPFYDIDFGWGKPIWMNFTSFD 402
L +G+ ++ E F D S K FYD DFGWGKP + S D
Sbjct: 354 LTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKPKKLETVSID 411
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 368 DAKDRISFSSVCKFPFYDIDFGWGKPIWMNFTSFD 402
DAK +S + K Y DFGWG+P + F S D
Sbjct: 375 DAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSID 409
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 77 TLSSFYPLAGKMK---------DKLSVDCNDEGIYFAEARAKCTLNEFLN-RPDLSLVIF 126
TL + PLAG + + V N + F+E+ N + P + +
Sbjct: 67 TLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXD--FNYLIGYHPRNTKDFY 124
Query: 127 KFHPVVGNEQRQSKEIAGAHVGKIQVTRFSCGGLVICACILHMVADGVTLGSFLMSWA 184
F P + E + + + A V IQVT F G+ I H+ DG T+ F+ +WA
Sbjct: 125 HFVPQLA-EPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWA 181
>pdb|1Z9S|B Chain B, Crystal Structure Of The Native Chaperone:subunit:subunit
Caf1m:caf1:caf1 Complex
pdb|1Z9S|C Chain C, Crystal Structure Of The Native Chaperone:subunit:subunit
Caf1m:caf1:caf1 Complex
pdb|4AYF|B Chain B, Crystal Structure Of The Complex Of The Caf1m:caf1
Chaperone:subunit Preassembly Complex Carrying The
Tyr40ala Mutation In The Caf1m Chaperone
pdb|4AZ8|B Chain B, Crystal Structure Of The Complex Of The Caf1m:caf1
Chaperone:subunit Preassembly Complex Carrying The
Kdkdtn Insertion At The F1g1 Loop Region
pdb|4B0M|B Chain B, Complex Of The Caf1an Usher Domain, Caf1m Chaperone And
Caf1 Subunit From Yersinia Pestis
Length = 149
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 391 GKPIWMNFTSFDGSIVQFANFVILSDTRSGD 421
G P+++ FTS DG+ QF VI D+R D
Sbjct: 67 GDPMYLTFTSQDGNNHQFTTKVIGKDSRDFD 97
>pdb|1P5U|B Chain B, X-Ray Structure Of The Ternary Caf1m:caf1:caf1
Chaperone:subunit:subunit Complex
Length = 149
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 391 GKPIWMNFTSFDGSIVQFANFVILSDTRSGD 421
G P+++ FTS DG+ QF VI D+R D
Sbjct: 67 GDPMYLTFTSQDGNNHQFTTKVIGKDSRDFD 97
>pdb|1P5U|C Chain C, X-Ray Structure Of The Ternary Caf1m:caf1:caf1
Chaperone:subunit:subunit Complex
pdb|1P5V|B Chain B, X-Ray Structure Of The Caf1m:caf1 Chaperone:subunit
Preassembly Complex
Length = 147
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 391 GKPIWMNFTSFDGSIVQFANFVILSDTRSGD 421
G P+++ FTS DG+ QF VI D+R D
Sbjct: 65 GDPMYLTFTSQDGNNHQFTTKVIGKDSRDFD 95
>pdb|3DOS|B Chain B, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Thr7phe And Ala9val Mutations In The Gd
Donor Strand
pdb|3DOS|C Chain C, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Thr7phe And Ala9val Mutations In The Gd
Donor Strand
pdb|3DOS|E Chain E, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Thr7phe And Ala9val Mutations In The Gd
Donor Strand
pdb|3DOS|F Chain F, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Thr7phe And Ala9val Mutations In The Gd
Donor Strand
Length = 149
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 391 GKPIWMNFTSFDGSIVQFANFVILSDTRSGD 421
G P+++ FTS DG+ QF VI D+R D
Sbjct: 67 GDPMYLTFTSQDGNNHQFTTKVIGKDSRDFD 97
>pdb|3DSN|B Chain B, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Thr7phe Mutation In The Gd Donor Strand
pdb|3DSN|C Chain C, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Thr7phe Mutation In The Gd Donor Strand
pdb|3DSN|E Chain E, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Thr7phe Mutation In The Gd Donor Strand
pdb|3DSN|F Chain F, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Thr7phe Mutation In The Gd Donor Strand
Length = 149
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 391 GKPIWMNFTSFDGSIVQFANFVILSDTRSGD 421
G P+++ FTS DG+ QF VI D+R D
Sbjct: 67 GDPMYLTFTSQDGNNHQFTTKVIGKDSRDFD 97
>pdb|3DPB|B Chain B, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Ala9val, Ala11val, And Leu13val Mutations
In The Gd Donor Strand
pdb|3DPB|C Chain C, Crystal Structure Of The Complex Of The Caf1m Chaperone
With The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1),
Carrying The Ala9val, Ala11val, And Leu13val Mutations
In The Gd Donor Strand
Length = 149
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 391 GKPIWMNFTSFDGSIVQFANFVILSDTRSGD 421
G P+++ FTS DG+ QF VI D+R D
Sbjct: 67 GDPMYLTFTSQDGNNHQFTTKVIGKDSRDFD 97
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 146 HVGKIQVTRFSCGGLVI---CACILHMVADGVTLGS--FLMSWAARAGKNIGEDTSICPN 200
+G++ V F+ GG+ A ++H+ ADGV +GS F + + I E T+ +
Sbjct: 232 RLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYED 291
Query: 201 YEI 203
YE+
Sbjct: 292 YEL 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,295,204
Number of Sequences: 62578
Number of extensions: 457463
Number of successful extensions: 877
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 19
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)