Query 036707
Match_columns 67
No_of_seqs 129 out of 1053
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 99.7 2.4E-16 5.1E-21 107.6 7.5 67 1-67 80-146 (233)
2 PLN03042 Lactoylglutathione ly 99.5 4.6E-14 9.9E-19 93.0 7.2 67 1-67 32-98 (185)
3 cd08358 Glo_EDI_BRP_like_21 Th 99.3 3.1E-12 6.7E-17 80.1 6.3 41 1-41 7-58 (127)
4 KOG2944 Glyoxalase [Carbohydra 99.1 1E-11 2.2E-16 81.2 0.7 67 1-67 27-93 (170)
5 PRK10291 glyoxalase I; Provisi 99.1 4.6E-10 9.9E-15 67.9 5.9 42 1-42 1-42 (129)
6 KOG2943 Predicted glyoxalase [ 98.9 7E-10 1.5E-14 77.1 3.0 44 2-45 23-77 (299)
7 cd07241 Glo_EDI_BRP_like_3 Thi 98.7 4.6E-08 1E-12 57.4 4.9 41 1-41 6-46 (125)
8 cd07233 Glyoxalase_I Glyoxalas 98.6 2E-07 4.3E-12 54.6 5.3 42 1-42 5-46 (121)
9 TIGR00068 glyox_I lactoylgluta 98.5 2.7E-07 5.9E-12 57.3 5.7 42 1-42 22-63 (150)
10 PLN02300 lactoylglutathione ly 98.5 2.4E-07 5.2E-12 63.4 5.8 42 1-42 29-70 (286)
11 cd07243 2_3_CTD_C C-terminal d 98.5 3.2E-07 6.9E-12 57.2 5.7 41 1-41 11-52 (143)
12 cd07257 THT_oxygenase_C The C- 98.5 3.1E-07 6.8E-12 57.7 4.9 42 1-42 6-48 (153)
13 cd08355 Glo_EDI_BRP_like_14 Th 98.4 9.6E-07 2.1E-11 52.3 5.8 30 2-31 5-34 (122)
14 PF00903 Glyoxalase: Glyoxalas 98.4 1.1E-06 2.3E-11 51.2 5.7 42 1-42 6-49 (128)
15 TIGR03645 glyox_marine lactoyl 98.4 5.5E-07 1.2E-11 57.2 4.7 25 1-25 9-33 (162)
16 cd07246 Glo_EDI_BRP_like_8 Thi 98.4 1.5E-06 3.2E-11 50.8 5.8 30 2-31 7-36 (122)
17 cd07256 HPCD_C_class_II C-term 98.3 1.3E-06 2.9E-11 55.2 5.5 40 1-40 8-47 (161)
18 cd08343 ED_TypeI_classII_C C-t 98.3 1.3E-06 2.8E-11 52.9 5.2 41 1-42 4-44 (131)
19 TIGR03081 metmalonyl_epim meth 98.3 8E-07 1.7E-11 52.5 3.7 41 1-41 6-46 (128)
20 cd07263 Glo_EDI_BRP_like_16 Th 98.2 4E-06 8.7E-11 48.3 5.2 27 1-27 3-29 (119)
21 cd07237 BphC1-RGP6_C_like C-te 98.2 3.8E-06 8.2E-11 52.8 5.3 42 1-42 14-58 (154)
22 cd08357 Glo_EDI_BRP_like_18 Th 98.2 1.4E-06 3.1E-11 51.2 2.9 25 1-25 4-28 (125)
23 cd07258 PpCmtC_C C-terminal do 98.2 4.1E-06 8.9E-11 52.3 5.0 35 2-41 5-39 (141)
24 cd07249 MMCE Methylmalonyl-CoA 98.2 2.1E-06 4.6E-11 50.4 3.4 40 1-40 5-45 (128)
25 cd07252 BphC1-RGP6_N_like N-te 98.1 1.3E-06 2.8E-11 52.1 2.1 25 1-25 7-31 (120)
26 cd08361 PpCmtC_N N-terminal do 98.1 2.2E-06 4.8E-11 51.7 3.0 25 1-25 11-35 (124)
27 cd08342 HPPD_N_like N-terminal 98.1 6.4E-06 1.4E-10 50.3 5.0 27 1-27 5-31 (136)
28 cd07265 2_3_CTD_N N-terminal d 98.1 2.3E-06 4.9E-11 50.8 2.9 26 1-26 9-34 (122)
29 cd07247 SgaA_N_like N-terminal 98.1 5.1E-06 1.1E-10 48.4 3.9 26 1-26 5-30 (114)
30 cd09014 BphC-JF8_C_like C-term 98.1 1.1E-05 2.4E-10 51.3 5.7 40 1-40 11-50 (166)
31 COG0346 GloA Lactoylglutathion 98.1 2.9E-06 6.3E-11 48.4 2.7 28 1-28 7-34 (138)
32 cd09013 BphC-JF8_N_like N-term 98.1 3.9E-06 8.5E-11 49.8 3.0 25 1-25 11-35 (121)
33 PRK11478 putative lyase; Provi 98.1 4.8E-06 1E-10 49.5 3.3 25 1-25 11-35 (129)
34 cd08346 PcpA_N_like N-terminal 98.0 1.1E-05 2.3E-10 47.1 4.6 27 1-27 6-32 (126)
35 cd08345 Fosfomycin_RP Fosfomyc 98.0 4.7E-06 1E-10 48.4 3.0 26 1-26 3-28 (113)
36 cd08350 BLMT_like BLMT, a bleo 98.0 8.7E-06 1.9E-10 48.3 4.0 25 1-26 7-31 (120)
37 PF13669 Glyoxalase_4: Glyoxal 98.0 9.3E-06 2E-10 48.1 3.9 42 1-42 4-45 (109)
38 cd08349 BLMA_like Bleomycin bi 98.0 7.3E-06 1.6E-10 47.2 3.3 25 2-26 4-28 (112)
39 TIGR03211 catechol_2_3 catecho 98.0 2E-05 4.4E-10 53.7 5.9 41 1-41 150-191 (303)
40 PRK06724 hypothetical protein; 98.0 1.7E-05 3.7E-10 48.9 5.0 40 1-40 12-54 (128)
41 PLN02300 lactoylglutathione ly 98.0 1.6E-05 3.4E-10 54.4 5.3 41 1-41 159-199 (286)
42 PRK04101 fosfomycin resistance 98.0 1.2E-05 2.7E-10 49.2 4.3 25 1-25 9-33 (139)
43 PF12681 Glyoxalase_2: Glyoxal 98.0 9.6E-06 2.1E-10 46.6 3.5 24 2-25 1-24 (108)
44 cd08354 Glo_EDI_BRP_like_13 Th 98.0 1.7E-05 3.7E-10 46.3 4.6 25 1-25 5-29 (122)
45 cd08351 ChaP_like ChaP, an enz 98.0 6E-06 1.3E-10 49.3 2.7 25 1-25 9-33 (123)
46 cd08353 Glo_EDI_BRP_like_7 Thi 98.0 1.6E-05 3.4E-10 48.2 4.5 26 1-27 8-33 (142)
47 cd07264 Glo_EDI_BRP_like_15 Th 98.0 7.5E-06 1.6E-10 48.2 3.0 25 1-25 5-29 (125)
48 cd08360 MhqB_like_C C-terminal 98.0 8.3E-06 1.8E-10 49.6 3.2 26 1-26 8-33 (134)
49 cd09011 Glo_EDI_BRP_like_23 Th 98.0 7.2E-06 1.6E-10 48.6 2.8 25 1-25 7-31 (120)
50 cd07239 BphC5-RK37_C_like C-te 98.0 1.7E-05 3.8E-10 49.4 4.6 25 1-25 9-33 (144)
51 cd08352 Glo_EDI_BRP_like_1 Thi 97.9 3E-05 6.4E-10 45.0 5.1 26 1-26 8-33 (125)
52 KOG2943 Predicted glyoxalase [ 97.9 2.4E-06 5.2E-11 59.7 0.2 39 1-43 154-192 (299)
53 cd07238 Glo_EDI_BRP_like_5 Thi 97.9 1.1E-05 2.4E-10 47.0 3.0 24 1-24 5-28 (112)
54 cd07255 Glo_EDI_BRP_like_12 Th 97.9 1.7E-05 3.7E-10 46.7 3.8 25 1-25 7-31 (125)
55 cd08364 FosX FosX, a fosfomyci 97.9 1.3E-05 2.8E-10 48.8 3.3 24 2-25 10-33 (131)
56 cd08359 Glo_EDI_BRP_like_22 Th 97.9 1.2E-05 2.7E-10 47.1 3.1 25 1-25 6-30 (119)
57 cd07244 FosA FosA, a Fosfomyci 97.9 1.5E-05 3.2E-10 47.5 3.4 26 1-26 6-31 (121)
58 cd07251 Glo_EDI_BRP_like_10 Th 97.9 9E-06 2E-10 47.4 2.3 25 1-25 3-27 (121)
59 TIGR03213 23dbph12diox 2,3-dih 97.9 2.8E-05 6E-10 52.8 4.9 42 1-42 147-191 (286)
60 TIGR02295 HpaD 3,4-dihydroxyph 97.9 4.4E-05 9.5E-10 51.6 5.8 39 2-40 142-180 (294)
61 cd08348 BphC2-C3-RGP6_C_like T 97.8 1.9E-05 4E-10 47.4 3.1 26 1-26 6-31 (134)
62 cd07261 Glo_EDI_BRP_like_11 Th 97.8 1E-05 2.2E-10 47.2 1.8 25 1-25 3-27 (114)
63 cd08347 PcpA_C_like C-terminal 97.8 2E-05 4.3E-10 50.0 3.2 26 1-26 6-31 (157)
64 cd07240 ED_TypeI_classII_N N-t 97.8 1.7E-05 3.8E-10 46.0 2.7 26 1-26 7-32 (117)
65 cd06587 Glo_EDI_BRP_like This 97.8 7.7E-05 1.7E-09 41.4 5.2 27 1-27 3-29 (112)
66 cd08362 BphC5-RrK37_N_like N-t 97.8 2.3E-05 5E-10 45.9 3.1 24 2-25 9-32 (120)
67 cd07267 THT_Oxygenase_N N-term 97.8 2.2E-05 4.7E-10 46.3 2.9 24 1-25 8-31 (113)
68 cd07245 Glo_EDI_BRP_like_9 Thi 97.8 2.5E-05 5.5E-10 44.2 3.0 26 1-26 5-30 (114)
69 cd07254 Glo_EDI_BRP_like_20 Th 97.8 2.1E-05 4.6E-10 46.3 2.6 25 1-25 6-30 (120)
70 cd07253 Glo_EDI_BRP_like_2 Thi 97.8 2.4E-05 5.1E-10 45.5 2.6 26 1-26 8-33 (125)
71 cd08363 FosB FosB, a fosfomyci 97.7 2.6E-05 5.6E-10 47.5 2.6 25 1-25 5-29 (131)
72 cd07266 HPCD_N_class_II N-term 97.7 3E-05 6.5E-10 45.7 2.6 24 2-25 10-33 (121)
73 cd09012 Glo_EDI_BRP_like_24 Th 97.7 3.4E-05 7.4E-10 45.9 2.7 25 2-27 6-30 (124)
74 cd08356 Glo_EDI_BRP_like_17 Th 97.7 3.6E-05 7.9E-10 45.7 2.5 24 1-25 6-29 (113)
75 cd07242 Glo_EDI_BRP_like_6 Thi 97.6 6.9E-05 1.5E-09 44.4 3.1 26 1-26 6-34 (128)
76 cd07235 MRD Mitomycin C resist 97.6 5.6E-05 1.2E-09 44.5 2.3 23 1-24 5-27 (122)
77 TIGR03213 23dbph12diox 2,3-dih 97.6 4.2E-05 9.1E-10 51.9 2.0 24 2-25 9-32 (286)
78 cd07262 Glo_EDI_BRP_like_19 Th 97.5 7.7E-05 1.7E-09 44.0 2.7 26 1-26 5-33 (123)
79 TIGR03211 catechol_2_3 catecho 97.5 8.3E-05 1.8E-09 50.7 3.0 26 1-26 9-34 (303)
80 TIGR02295 HpaD 3,4-dihydroxyph 97.5 0.00011 2.3E-09 49.8 3.4 24 2-25 10-33 (294)
81 COG2514 Predicted ring-cleavag 97.5 0.00012 2.7E-09 51.2 3.6 38 2-45 174-211 (265)
82 cd08344 MhqB_like_N N-terminal 97.5 0.0001 2.3E-09 43.2 2.8 24 1-25 7-30 (112)
83 cd07250 HPPD_C_like C-terminal 97.4 0.00028 6.2E-09 46.2 4.5 39 2-40 9-51 (191)
84 PF14506 CppA_N: CppA N-termin 97.4 0.0002 4.3E-09 45.3 3.5 34 1-40 5-38 (125)
85 COG2514 Predicted ring-cleavag 97.1 0.0018 3.8E-08 45.4 6.1 26 2-27 16-41 (265)
86 cd06588 PhnB_like Escherichia 96.9 0.0042 9.2E-08 37.5 5.6 26 2-27 5-31 (128)
87 COG3324 Predicted enzyme relat 96.9 0.0022 4.8E-08 40.6 4.4 26 2-27 15-40 (127)
88 COG3565 Predicted dioxygenase 96.9 0.0004 8.7E-09 44.0 1.0 24 2-25 10-33 (138)
89 TIGR01263 4HPPD 4-hydroxypheny 96.3 0.0032 6.8E-08 44.5 2.6 26 2-27 164-191 (353)
90 COG2764 PhnB Uncharacterized p 96.1 0.022 4.7E-07 36.3 5.5 29 2-30 6-35 (136)
91 COG3607 Predicted lactoylgluta 95.6 0.0055 1.2E-07 39.1 1.1 24 2-26 9-32 (133)
92 TIGR01263 4HPPD 4-hydroxypheny 95.5 0.037 8.1E-07 39.1 5.1 24 2-25 8-31 (353)
93 PRK01037 trmD tRNA (guanine-N( 95.4 0.011 2.4E-07 43.0 2.3 21 2-22 253-273 (357)
94 PF13468 Glyoxalase_3: Glyoxal 94.8 0.059 1.3E-06 34.3 4.0 39 2-40 6-44 (175)
95 PLN02875 4-hydroxyphenylpyruva 93.5 0.13 2.8E-06 37.8 4.1 41 2-42 186-231 (398)
96 PRK10148 hypothetical protein; 91.4 0.4 8.7E-06 30.3 3.9 25 2-26 7-32 (147)
97 PF14507 CppA_C: CppA C-termin 87.8 0.17 3.7E-06 30.9 0.1 17 2-19 11-27 (101)
98 PF06983 3-dmu-9_3-mt: 3-demet 80.9 2.8 6.2E-05 25.4 3.4 17 5-21 11-27 (116)
99 PF13225 DUF4033: Domain of un 79.8 5 0.00011 23.9 4.1 28 10-37 49-76 (86)
100 KOG4657 Uncharacterized conser 76.4 6.2 0.00013 27.6 4.3 35 5-42 145-179 (246)
101 PLN02875 4-hydroxyphenylpyruva 66.3 16 0.00034 27.1 4.8 26 2-27 6-31 (398)
102 PF13176 TPR_7: Tetratricopept 63.4 5.9 0.00013 18.8 1.5 17 4-20 12-28 (36)
103 COG3185 4-hydroxyphenylpyruvat 56.1 11 0.00024 27.8 2.4 28 3-30 176-203 (363)
104 PF13523 Acetyltransf_8: Acety 53.0 26 0.00056 21.0 3.4 26 6-32 123-148 (152)
105 cd00034 ChSh Chromo Shadow Dom 52.1 7 0.00015 20.9 0.7 17 3-19 36-52 (54)
106 COG0456 RimI Acetyltransferase 50.1 26 0.00057 21.2 3.1 21 6-27 136-156 (177)
107 smart00300 ChSh Chromo Shadow 50.0 7.5 0.00016 21.2 0.6 18 3-20 42-59 (61)
108 PF08445 FR47: FR47-like prote 47.3 46 0.001 18.7 3.7 20 5-25 63-82 (86)
109 PF15067 FAM124: FAM124 family 46.0 19 0.00041 25.1 2.2 24 2-25 134-159 (236)
110 PF00515 TPR_1: Tetratricopept 40.3 24 0.00052 15.8 1.5 15 5-19 15-29 (34)
111 PF11782 DUF3319: Protein of u 38.7 20 0.00043 21.5 1.2 12 6-17 36-47 (88)
112 PF01393 Chromo_shadow: Chromo 36.3 26 0.00056 19.0 1.4 16 4-19 40-55 (58)
113 PRK10514 putative acetyltransf 36.0 69 0.0015 18.7 3.4 20 6-26 108-127 (145)
114 PHA03397 vlf-1 very late expre 33.7 25 0.00055 25.8 1.3 16 6-21 124-139 (363)
115 PF04761 Phage_Treg: Lactococc 33.5 29 0.00063 18.9 1.3 12 8-19 16-27 (57)
116 PF13181 TPR_8: Tetratricopept 33.1 40 0.00087 14.9 1.6 16 4-19 14-29 (34)
117 PF13420 Acetyltransf_4: Acety 31.5 63 0.0014 19.1 2.7 22 5-27 120-141 (155)
118 COG0189 RimK Glutathione synth 31.0 1.3E+02 0.0028 21.4 4.5 41 2-42 138-178 (318)
119 smart00671 SEL1 Sel1-like repe 30.5 46 0.001 14.8 1.6 13 5-17 19-31 (36)
120 PF03634 TCP: TCP family trans 30.4 42 0.00092 20.7 1.8 18 6-23 25-44 (138)
121 PTZ00330 acetyltransferase; Pr 29.7 69 0.0015 18.7 2.6 18 7-25 124-141 (147)
122 PF07719 TPR_2: Tetratricopept 27.3 53 0.0011 14.3 1.5 16 4-19 14-29 (34)
123 PRK10562 putative acetyltransf 27.3 1.1E+02 0.0024 18.1 3.2 21 5-26 106-126 (145)
124 PHA02503 putative transcriptio 27.2 44 0.00094 18.2 1.3 11 8-18 16-26 (57)
125 smart00733 Mterf Mitochondrial 26.5 35 0.00075 14.4 0.7 16 4-20 15-30 (31)
126 PRK13688 hypothetical protein; 26.2 1.7E+02 0.0037 18.4 4.1 18 8-26 117-134 (156)
127 TIGR03585 PseH pseudaminic aci 25.4 86 0.0019 18.4 2.5 21 5-26 119-139 (156)
128 PF02208 Sorb: Sorbin homologo 25.2 32 0.0007 18.3 0.5 17 2-18 17-33 (47)
129 PF08238 Sel1: Sel1 repeat; I 24.8 39 0.00085 15.4 0.8 13 5-17 22-34 (39)
130 PHA00212 putative transcriptio 24.5 51 0.0011 18.2 1.3 11 8-18 18-28 (63)
131 PRK10140 putative acetyltransf 24.1 95 0.0021 18.3 2.6 20 6-26 123-142 (162)
132 PF05100 Phage_tail_L: Phage m 24.1 1.2E+02 0.0026 20.7 3.2 26 2-27 51-80 (206)
133 KOG4410 5-formyltetrahydrofola 23.2 91 0.002 22.9 2.6 40 2-48 342-382 (396)
134 KOG2640 Thioredoxin [Function 21.9 1.7E+02 0.0037 21.4 3.8 22 4-25 148-169 (319)
135 PF07901 DUF1672: Protein of u 20.8 2.5E+02 0.0055 20.1 4.4 35 8-42 40-74 (277)
136 KOG0638 4-hydroxyphenylpyruvat 20.6 82 0.0018 23.4 2.0 23 2-24 23-45 (381)
137 PRK10314 putative acyltransfer 20.6 1E+02 0.0023 19.0 2.3 18 7-25 117-134 (153)
No 1
>PLN02367 lactoylglutathione lyase
Probab=99.67 E-value=2.4e-16 Score=107.61 Aligned_cols=67 Identities=88% Similarity=1.427 Sum_probs=58.9
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCCCCCCCCCccccceeccCCceeeeeC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELT 67 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~~~~~~~~~~~~~~~~~~~~g~leLt 67 (67)
||||+|+++|++||+++|||++..+.++++++|+++||++++..+.+.|.+....|.+.+.++||||
T Consensus 80 mlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt 146 (233)
T PLN02367 80 MYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELT 146 (233)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEe
Confidence 7999999999999999999999999999988999999999776555666556777988888899996
No 2
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.52 E-value=4.6e-14 Score=93.03 Aligned_cols=67 Identities=87% Similarity=1.419 Sum_probs=54.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCCCCCCCCCccccceeccCCceeeeeC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELT 67 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~~~~~~~~~~~~~~~~~~~~g~leLt 67 (67)
||+|+|+++|++||+++|||++..+...+.++++++|+++++....|.+....-.|++.+.+.|||+
T Consensus 32 ~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~ 98 (185)
T PLN03042 32 MFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELT 98 (185)
T ss_pred EEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEE
Confidence 6999999999999999999999999887777899999998654433343344556777788889984
No 3
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.34 E-value=3.1e-12 Score=80.07 Aligned_cols=41 Identities=34% Similarity=0.736 Sum_probs=35.1
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCC-----------CeEEEEEeccC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYE 41 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~-----------~~~~l~fL~~g 41 (67)
||+|+|+++|++||+++|||+++++.++++ +++.++||+++
T Consensus 7 ~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 58 (127)
T cd08358 7 VFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYG 58 (127)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecC
Confidence 699999999999999999999988887665 56677788764
No 4
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1e-11 Score=81.25 Aligned_cols=67 Identities=51% Similarity=0.793 Sum_probs=60.2
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCCCCCCCCCccccceeccCCceeeeeC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELT 67 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~~~~~~~~~~~~~~~~~~~~g~leLt 67 (67)
|+||+|+.+|+.||++++||.+..+..+++..|.++||++...+..|.++..+..|...+++.+|||
T Consensus 27 ~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELt 93 (170)
T KOG2944|consen 27 MLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELT 93 (170)
T ss_pred eeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeee
Confidence 7999999999999999999999988888888899999999877666777777779988899999997
No 5
>PRK10291 glyoxalase I; Provisional
Probab=99.07 E-value=4.6e-10 Score=67.86 Aligned_cols=42 Identities=50% Similarity=0.893 Sum_probs=36.4
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~ 42 (67)
||+|+|+++|++||+++|||++..+...+..++.++|++.++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~ 42 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGP 42 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCC
Confidence 799999999999999999999988776666678889987654
No 6
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=7e-10 Score=77.09 Aligned_cols=44 Identities=39% Similarity=0.729 Sum_probs=40.5
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEeCCC-----------CeEEEEEeccCCCCC
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTAS 45 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~~~~-----------~~~~l~fL~~g~~~~ 45 (67)
++|.|++++++||+++|||++.|..++++ ++++.+|+|+|++++
T Consensus 23 fkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEds 77 (299)
T KOG2943|consen 23 FKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDS 77 (299)
T ss_pred EeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcc
Confidence 68999999999999999999999988888 899999999998754
No 7
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.68 E-value=4.6e-08 Score=57.37 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=30.7
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 41 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g 41 (67)
+|.|+|+++|++||+++|||++..+...+..++..+|+..+
T Consensus 6 ~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~ 46 (125)
T cd07241 6 AIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFD 46 (125)
T ss_pred EEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecC
Confidence 48899999999999999999987655433334555666553
No 8
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=98.56 E-value=2e-07 Score=54.62 Aligned_cols=42 Identities=67% Similarity=1.121 Sum_probs=34.2
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~ 42 (67)
+|.|+|+++|++||+++||+++..+...+++++..+|+..++
T Consensus 5 ~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~ 46 (121)
T cd07233 5 MLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPD 46 (121)
T ss_pred EEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCC
Confidence 478999999999999999999987765555457778887654
No 9
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=98.53 E-value=2.7e-07 Score=57.29 Aligned_cols=42 Identities=67% Similarity=1.126 Sum_probs=33.7
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~ 42 (67)
+|+|.|+++|++||+++|||++..+...+.+++..+|++.++
T Consensus 22 ~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~ 63 (150)
T TIGR00068 22 MLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGD 63 (150)
T ss_pred EEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCC
Confidence 378999999999999999999987665555556677887653
No 10
>PLN02300 lactoylglutathione lyase
Probab=98.53 E-value=2.4e-07 Score=63.37 Aligned_cols=42 Identities=40% Similarity=0.836 Sum_probs=34.7
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~ 42 (67)
+|+|+|+++|++||+++|||++..+...+...+..+|++.++
T Consensus 29 ~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~ 70 (286)
T PLN02300 29 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGP 70 (286)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCC
Confidence 489999999999999999999987766556667778887653
No 11
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=98.52 E-value=3.2e-07 Score=57.15 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=29.9
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeE-EEEEeccC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYE 41 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~-~l~fL~~g 41 (67)
+|+|+|+++|++||+++|||++..+...+++.. ..+|+..+
T Consensus 11 ~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~ 52 (143)
T cd07243 11 LLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCS 52 (143)
T ss_pred EEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecC
Confidence 489999999999999999999877654333322 34566443
No 12
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.48 E-value=3.1e-07 Score=57.68 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=32.4
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCC-CCeEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~-~~~~~l~fL~~g~ 42 (67)
+|.|+|+++|++||+++|||++..+...+ .++..++|+..++
T Consensus 6 ~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~ 48 (153)
T cd07257 6 VLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDR 48 (153)
T ss_pred EEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCC
Confidence 48899999999999999999997665443 2335677887643
No 13
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.42 E-value=9.6e-07 Score=52.31 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.3
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEeCCCC
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEM 31 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~ 31 (67)
|.|+|+++|++||+++||+++..+...+.+
T Consensus 5 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~ 34 (122)
T cd08355 5 LRYRDAAAAIDWLTDAFGFEERLVVPDDDG 34 (122)
T ss_pred EEECCHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 789999999999999999999876543333
No 14
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=98.41 E-value=1.1e-06 Score=51.18 Aligned_cols=42 Identities=31% Similarity=0.535 Sum_probs=31.1
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEe--CCCCeEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLD--FPEMKFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~--~~~~~~~l~fL~~g~ 42 (67)
+|+|+|+++|++||+++|||++..... ........+++..+.
T Consensus 6 ~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (128)
T PF00903_consen 6 AIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE 49 (128)
T ss_dssp EEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS
T ss_pred EEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc
Confidence 478999999999999999999988765 222334555555544
No 15
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=98.40 E-value=5.5e-07 Score=57.20 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.4
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|.|+|+++|++||+++|||+++.+
T Consensus 9 ~i~V~Dle~s~~FY~~~LG~~~~~~ 33 (162)
T TIGR03645 9 GISVPDLDAAVKFYTEVLGWYLIMP 33 (162)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEEec
Confidence 4899999999999999999998653
No 16
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.37 E-value=1.5e-06 Score=50.80 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=25.3
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEeCCCC
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEM 31 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~ 31 (67)
|.|+|+++|++||+++||+++..+...+.+
T Consensus 7 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~ 36 (122)
T cd07246 7 LIVRDAAAAIDFYKKAFGAEELERMPDDDG 36 (122)
T ss_pred EEECCHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence 789999999999999999999877653333
No 17
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=98.35 E-value=1.3e-06 Score=55.18 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=29.1
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEecc
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 40 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~ 40 (67)
+|.|+|+++|++||+++|||++......+.+.....|+..
T Consensus 8 ~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~ 47 (161)
T cd07256 8 NLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHR 47 (161)
T ss_pred EEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEec
Confidence 3889999999999999999998755433233334456643
No 18
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=98.35 E-value=1.3e-06 Score=52.87 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=31.5
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~ 42 (67)
+|.|+|+++|++||+++|||++..+...+ +....+|+..++
T Consensus 4 ~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~ 44 (131)
T cd08343 4 VLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE 44 (131)
T ss_pred EEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC
Confidence 47899999999999999999997765433 334566776553
No 19
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=98.31 E-value=8e-07 Score=52.45 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=30.1
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 41 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g 41 (67)
+|.|+|+++|++||+++||+++......+..++.++++..+
T Consensus 6 ~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~ 46 (128)
T TIGR03081 6 GIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG 46 (128)
T ss_pred EEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC
Confidence 37899999999999999999987654333334456666544
No 20
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.22 E-value=4e-06 Score=48.27 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=24.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEe
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
+|+|.|+++|++||+++|||++..+..
T Consensus 3 ~l~v~d~~~~~~fY~~~lG~~~~~~~~ 29 (119)
T cd07263 3 SLYVDDQDKALAFYTEKLGFEVREDVP 29 (119)
T ss_pred eEEeCCHHHHHHHHHhccCeEEEEeec
Confidence 489999999999999999999987654
No 21
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=98.21 E-value=3.8e-06 Score=52.78 Aligned_cols=42 Identities=29% Similarity=0.513 Sum_probs=31.1
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCC---CCeEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFP---EMKFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~---~~~~~l~fL~~g~ 42 (67)
+|.|+|+++|++||+++|||++..+...+ +++..++|+..++
T Consensus 14 ~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~ 58 (154)
T cd07237 14 VLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG 58 (154)
T ss_pred EEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC
Confidence 37899999999999999999987654332 1245677776643
No 22
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.19 E-value=1.4e-06 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.5
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|.|+|+++|++||+++|||++...
T Consensus 4 ~l~v~Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 4 AIPVRDLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEeec
Confidence 4899999999999999999998654
No 23
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.18 E-value=4.1e-06 Score=52.34 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=28.1
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccC
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 41 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g 41 (67)
|+|+|+++|++||+++|||++..+.. . .++||...
T Consensus 5 l~V~Dle~s~~Fy~~vLG~~~~~~~~--~---~~~~l~~~ 39 (141)
T cd07258 5 IGSENFEASRDSLVEDFGFRVSDLIE--D---RIVFMRCH 39 (141)
T ss_pred EecCCHHHHHHHHHhcCCCEeeeeeC--C---EEEEEEcC
Confidence 79999999999999999999877642 1 35677643
No 24
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.18 E-value=2.1e-06 Score=50.39 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=30.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCC-CCeEEEEEecc
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGY 40 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~-~~~~~l~fL~~ 40 (67)
+|.|+|+++|++||+++|||++......+ .+.+..+|+..
T Consensus 5 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~ 45 (128)
T cd07249 5 GIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL 45 (128)
T ss_pred EEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc
Confidence 47899999999999999999997665432 23355666654
No 25
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=98.14 E-value=1.3e-06 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.5
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|+|+|+++|++||+++|||++..+
T Consensus 7 ~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 7 GVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred EEEeCCHHHHHHHHHhccCceeccC
Confidence 4899999999999999999998654
No 26
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.14 E-value=2.2e-06 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|.|+|+++|++||+++|||++..+
T Consensus 11 ~l~v~d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 11 RLGTRDLAGATRFATDILGLQVAER 35 (124)
T ss_pred EEeeCCHHHHHHHHHhccCceeccC
Confidence 3789999999999999999998654
No 27
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=98.13 E-value=6.4e-06 Score=50.33 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.9
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEe
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
.|.|.|+++|++||+++||+++..+..
T Consensus 5 ~i~V~D~e~s~~FY~~vLGf~~~~~~~ 31 (136)
T cd08342 5 EFYVGNAKQLASWFSTKLGFEPVAYHG 31 (136)
T ss_pred EEEeCCHHHHHHHHHHhcCCeEEEecC
Confidence 378999999999999999999987654
No 28
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=98.13 E-value=2.3e-06 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.0
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
.|+|+|+++|++||+++|||++..+.
T Consensus 9 ~l~v~Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 9 QLRVLDLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred EEEeCCHHHHHHHHHhccCCEeeeec
Confidence 37899999999999999999987653
No 29
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=98.09 E-value=5.1e-06 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.0
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+|.|+|+++|++||+++|||++....
T Consensus 5 ~l~v~d~~~s~~FY~~~lG~~~~~~~ 30 (114)
T cd07247 5 ELPTTDPERAKAFYGAVFGWTFEDMG 30 (114)
T ss_pred EeeCCCHHHHHHHHHhccCceeeecc
Confidence 47899999999999999999997543
No 30
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=98.09 E-value=1.1e-05 Score=51.34 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=28.9
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEecc
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 40 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~ 40 (67)
.|.|.|+++|++||+++|||++..+...+.+.....|+..
T Consensus 11 ~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~ 50 (166)
T cd09014 11 NLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSV 50 (166)
T ss_pred EEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeC
Confidence 3789999999999999999998766543333333345544
No 31
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.09 E-value=2.9e-06 Score=48.42 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=25.0
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDF 28 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~ 28 (67)
+|.|+|+++|++||+++|||+++.+...
T Consensus 7 ~l~v~dl~~s~~FY~~~LG~~~~~~~~~ 34 (138)
T COG0346 7 TLAVPDLEASIDFYTDVLGLRLVKDTVN 34 (138)
T ss_pred EEeeCCHhHhHHHHHhhcCCeeeeeccc
Confidence 4789999999999999999999887653
No 32
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=98.06 E-value=3.9e-06 Score=49.80 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.8
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|.|+|+++|++||+++|||++..+
T Consensus 11 ~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 11 ELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EEEeCCHHHHHHHHHhCcCCEEEee
Confidence 3789999999999999999999765
No 33
>PRK11478 putative lyase; Provisional
Probab=98.06 E-value=4.8e-06 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.479 Sum_probs=22.2
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|.|.|+++|++||+++|||++..+
T Consensus 11 ~l~v~D~~~a~~FY~~~LG~~~~~~ 35 (129)
T PRK11478 11 AIIATDYAVSKAFYCDILGFTLQSE 35 (129)
T ss_pred EEEcCCHHHHHHHHHHHhCCEeccc
Confidence 3789999999999999999998643
No 34
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.04 E-value=1.1e-05 Score=47.10 Aligned_cols=27 Identities=33% Similarity=0.664 Sum_probs=24.1
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEe
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
+|.|.|+++|++||+++|||++..+..
T Consensus 6 ~l~v~d~~~a~~FY~~~lG~~~~~~~~ 32 (126)
T cd08346 6 TLITRDAQETVDFYTDVLGLRLVKKTV 32 (126)
T ss_pred EEEcCChhHhHHHHHHccCCEEeeeEe
Confidence 478999999999999999999977654
No 35
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.04 E-value=4.7e-06 Score=48.38 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+|+|+|+++|++||+++|||++..+.
T Consensus 3 ~l~v~d~~~s~~Fy~~~lg~~~~~~~ 28 (113)
T cd08345 3 TLIVKDLNKSIAFYRDILGAELIYSS 28 (113)
T ss_pred eEEECCHHHHHHHHHHhcCCeeeecc
Confidence 58999999999999999999987654
No 36
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=98.02 E-value=8.7e-06 Score=48.32 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.1
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+|.|+|+++|++||++ |||++..+.
T Consensus 7 ~l~v~Dl~~s~~FY~~-lG~~~~~~~ 31 (120)
T cd08350 7 NLPSRDLDATEAFYAR-LGFSVGYRQ 31 (120)
T ss_pred eeEcCCHHHHHHHHHH-cCCEEEecC
Confidence 4889999999999999 999997653
No 37
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=98.01 E-value=9.3e-06 Score=48.11 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=34.0
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~ 42 (67)
+|.|+|++++++||+++||++.......+..++++.|+..++
T Consensus 4 ~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~ 45 (109)
T PF13669_consen 4 GIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGD 45 (109)
T ss_dssp EEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETT
T ss_pred EEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCC
Confidence 378999999999999999999877766666667777877765
No 38
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=98.00 E-value=7.3e-06 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.9
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
|+|+|+++|++||+++|||++..+.
T Consensus 4 i~v~d~~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 4 LPVSDIERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred EEECCHHHHHHHHHhccCeEEEEEc
Confidence 7899999999999999999997654
No 39
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.00 E-value=2e-05 Score=53.68 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=30.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeE-EEEEeccC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYE 41 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~-~l~fL~~g 41 (67)
.|.|+|+++|++||+++|||++..+...+.+.. ...|+..+
T Consensus 150 ~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
T TIGR03211 150 LLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVS 191 (303)
T ss_pred eEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcC
Confidence 378999999999999999999876654444332 45566543
No 40
>PRK06724 hypothetical protein; Provisional
Probab=97.99 E-value=1.7e-05 Score=48.88 Aligned_cols=40 Identities=20% Similarity=0.437 Sum_probs=27.0
Q ss_pred CeeecChHHHHHHHhhhc---CCEEEEEEeCCCCeEEEEEecc
Q 036707 1 MFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGY 40 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vL---G~~v~~~~~~~~~~~~l~fL~~ 40 (67)
+|.|+|+++|++||+++| |++.........++..+++...
T Consensus 12 ~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g~~~l~l~~~ 54 (128)
T PRK06724 12 EFWVANLEESISFYDMLFSIIGWRKLNEVAYSTGESEIYFKEV 54 (128)
T ss_pred EEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCCCeeEEEecC
Confidence 389999999999999965 7776533233344445555443
No 41
>PLN02300 lactoylglutathione lyase
Probab=97.99 E-value=1.6e-05 Score=54.44 Aligned_cols=41 Identities=39% Similarity=0.832 Sum_probs=33.9
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 41 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g 41 (67)
+|.|.|+++|.+||+++||+++..+...+..++.+++++++
T Consensus 159 ~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~ 199 (286)
T PLN02300 159 MLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYG 199 (286)
T ss_pred EEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecC
Confidence 47899999999999999999998766555556888888754
No 42
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=97.98 E-value=1.2e-05 Score=49.23 Aligned_cols=25 Identities=36% Similarity=0.751 Sum_probs=22.5
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|.|+|+++|++||+++|||++..+
T Consensus 9 ~L~v~Dl~~s~~FY~~~lG~~~~~~ 33 (139)
T PRK04101 9 CFSVSNLEKSIEFYEKVLGAKLLVK 33 (139)
T ss_pred EEEecCHHHHHHHHHhccCCEEEee
Confidence 3789999999999999999999754
No 43
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=97.98 E-value=9.6e-06 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=22.5
Q ss_pred eeecChHHHHHHHhhhcCCEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
|.|+|+++|++||+++|||++...
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~ 24 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFD 24 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEE
T ss_pred CccCCHHHHHHHHHHhcCCEEEEe
Confidence 689999999999999999999884
No 44
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.98 E-value=1.7e-05 Score=46.34 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.8
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|+|.|+++|++||+++|||++..+
T Consensus 5 ~l~v~d~~~s~~Fy~~~lG~~~~~~ 29 (122)
T cd08354 5 ALYVDDLEAAEAFYEDVLGLELMLK 29 (122)
T ss_pred EEEeCCHHHHHHHHHhccCCEEeec
Confidence 4899999999999999999999764
No 45
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=97.98 E-value=6e-06 Score=49.32 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=22.5
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|+|+|+++|++||+++||+++...
T Consensus 9 ~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (123)
T cd08351 9 IVPARDREASAEFYAEILGLPWAKP 33 (123)
T ss_pred EEEcCCHHHHHHHHHHhcCCEeeec
Confidence 3789999999999999999998763
No 46
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=97.97 E-value=1.6e-05 Score=48.25 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=22.4
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEe
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
+|.|+|+++|++||++ |||++..+..
T Consensus 8 ~i~v~Dl~~s~~FY~~-LG~~~~~~~~ 33 (142)
T cd08353 8 GIVVRDLEAAIAFFLE-LGLELEGRAE 33 (142)
T ss_pred EEEeCCHHHHHHHHHH-cCCEEccccc
Confidence 4889999999999998 9999876543
No 47
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.97 E-value=7.5e-06 Score=48.17 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.4
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|.|+|+++|++||+++|||++...
T Consensus 5 ~l~v~D~~~s~~FY~~~lG~~~~~~ 29 (125)
T cd07264 5 IIYVEDVEKTLEFYERAFGFERRFL 29 (125)
T ss_pred EEEEcCHHHHHHHHHHhhCCeEEee
Confidence 4789999999999999999998653
No 48
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=97.96 E-value=8.3e-06 Score=49.62 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.2
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+|.|.|+++|++||+++|||++..+.
T Consensus 8 ~l~v~dl~~s~~FY~~vlGl~~~~~~ 33 (134)
T cd08360 8 VLFVPDVEAAEAFYRDRLGFRVSDRF 33 (134)
T ss_pred EEEcCCHHHHHHHHHHhcCCEEEEEe
Confidence 47899999999999999999987654
No 49
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.96 E-value=7.2e-06 Score=48.57 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.2
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|.|+|+++|++||+++||+++..+
T Consensus 7 ~l~v~D~~~a~~FY~~~lG~~~~~~ 31 (120)
T cd09011 7 LLVVKDIEKSKKFYEKVLGLKVVMD 31 (120)
T ss_pred EEEECCHHHHHHHHHHhcCCEEeec
Confidence 3789999999999999999998653
No 50
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=97.96 E-value=1.7e-05 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.4
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|+|.|+++|++||+++|||++..+
T Consensus 9 ~i~V~Dle~s~~FY~~~LG~~~~~~ 33 (144)
T cd07239 9 VLNSPDVDKTVAFYEDVLGFRVSDW 33 (144)
T ss_pred EEECCCHHHHHHHHHhcCCCEEEEe
Confidence 3789999999999999999998654
No 51
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=97.94 E-value=3e-05 Score=45.04 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=23.0
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+|.|.|+++|++||+++|||++..+.
T Consensus 8 ~l~v~d~~~a~~fy~~~lG~~~~~~~ 33 (125)
T cd08352 8 AIICSDYEKSKEFYVEILGFKVIREV 33 (125)
T ss_pred EEEcCCHHHHHHHHHHhcCCEEeeee
Confidence 47899999999999999999987653
No 52
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=2.4e-06 Score=59.69 Aligned_cols=39 Identities=28% Similarity=0.635 Sum_probs=31.5
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDT 43 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~~ 43 (67)
||+|.||++|++||++.|||++.+.. .+.+.+.|+++++
T Consensus 154 ~l~VgdL~ks~kyw~~~lgM~ileke----ek~t~~~mgYgd~ 192 (299)
T KOG2943|consen 154 MLNVGDLQKSIKYWEKLLGMKILEKE----EKYTRARMGYGDE 192 (299)
T ss_pred EEEehhHHHHHHHHHHHhCcchhhhh----hhhhhhhhccCCc
Confidence 68999999999999999999998742 2346677777764
No 53
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=97.91 E-value=1.1e-05 Score=47.03 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=21.8
Q ss_pred CeeecChHHHHHHHhhhcCCEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLK 24 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~ 24 (67)
+|.|+|+++|++||+++|||++..
T Consensus 5 ~l~v~Dl~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 5 NLPVADPEAAAAFYADVLGLDVVM 28 (112)
T ss_pred eEecCCHHHHHHHHHHhcCceEEE
Confidence 478999999999999999999864
No 54
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.91 E-value=1.7e-05 Score=46.72 Aligned_cols=25 Identities=44% Similarity=0.796 Sum_probs=22.9
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|.|.|+++|++||+++|||++..+
T Consensus 7 ~l~v~d~~~~~~Fy~~~lG~~~~~~ 31 (125)
T cd07255 7 TLRVADLERSLAFYQDVLGLEVLER 31 (125)
T ss_pred EEEECCHHHHHHHHHhccCcEEEEc
Confidence 3789999999999999999999765
No 55
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=97.91 E-value=1.3e-05 Score=48.81 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=22.0
Q ss_pred eeecChHHHHHHHhhhcCCEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
|.|+|+++|++||+++|||++..+
T Consensus 10 l~V~dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 10 LIVKDLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred EEeCCHHHHHHHHHHHhCCeeEEe
Confidence 789999999999999999988655
No 56
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=97.90 E-value=1.2e-05 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.5
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|.|+|+++|++||+++||+++..+
T Consensus 6 ~l~v~D~~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 6 VIVTDDLAETADFYVRHFGFTVVFD 30 (119)
T ss_pred EEEECCHHHHHHHHHHhhCcEEEec
Confidence 3789999999999999999998764
No 57
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=97.90 E-value=1.5e-05 Score=47.45 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.0
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
.|.|+|+++|++||+++|||++..+.
T Consensus 6 ~l~v~d~~~~~~FY~~vLG~~~~~~~ 31 (121)
T cd07244 6 TLAVSDLERSVAFYVDLLGFKLHVRW 31 (121)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEec
Confidence 37899999999999999999987654
No 58
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.88 E-value=9e-06 Score=47.36 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.7
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|.|+|+++|.+||+++|||++..+
T Consensus 3 ~l~v~d~~~a~~FY~~~lg~~~~~~ 27 (121)
T cd07251 3 TLGVADLARSRAFYEALLGWKPSAD 27 (121)
T ss_pred eEeeCCHHHHHHHHHHhcCceeccc
Confidence 4789999999999999999998755
No 59
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=97.88 E-value=2.8e-05 Score=52.80 Aligned_cols=42 Identities=31% Similarity=0.589 Sum_probs=30.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeC--CCC-eEEEEEeccCC
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDF--PEM-KFSLYFLGYED 42 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~--~~~-~~~l~fL~~g~ 42 (67)
+|+|.|+++|++||+++|||++..+... +++ .+.++|+..++
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~ 191 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNE 191 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECC
Confidence 3799999999999999999998765432 222 12456776543
No 60
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=97.87 E-value=4.4e-05 Score=51.65 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=30.3
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEecc
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 40 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~ 40 (67)
|.|.|+++|++||+++|||++..+...+.+.+...|+..
T Consensus 142 l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~ 180 (294)
T TIGR02295 142 VFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHR 180 (294)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEec
Confidence 789999999999999999999776544444555566643
No 61
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=97.83 E-value=1.9e-05 Score=47.40 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=23.0
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+|+|.|+++|++||+++|||++..+.
T Consensus 6 ~l~v~D~~~s~~FY~~~lG~~~~~~~ 31 (134)
T cd08348 6 VLYVRDLEAMVRFYRDVLGFTVTDRG 31 (134)
T ss_pred EEEecCHHHHHHHHHHhcCCEEEeec
Confidence 47899999999999999999987653
No 62
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.82 E-value=1e-05 Score=47.24 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=22.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
+|.|+|+++|++||+++||+++...
T Consensus 3 ~l~v~d~~~a~~FY~~~lg~~~~~~ 27 (114)
T cd07261 3 LLYVEDPAASAEFYSELLGREPVEL 27 (114)
T ss_pred EEEECCHHHHHHHHHHHcCCCccCC
Confidence 4789999999999999999998653
No 63
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=97.82 E-value=2e-05 Score=49.99 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=23.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+|.|+|+++|++||+++|||++..+.
T Consensus 6 ~i~V~Dle~s~~FY~~~LG~~~~~~~ 31 (157)
T cd08347 6 TLTVRDPEATAAFLTDVLGFREVGEE 31 (157)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEEeee
Confidence 47899999999999999999997654
No 64
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=97.82 E-value=1.7e-05 Score=46.00 Aligned_cols=26 Identities=35% Similarity=0.687 Sum_probs=23.2
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
.|.|+|+++|++||+++|||++..+.
T Consensus 7 ~l~v~d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 7 ELEVPDLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred EEecCCHHHHHHHHHhccCcEEEeec
Confidence 37899999999999999999998654
No 65
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=97.81 E-value=7.7e-05 Score=41.45 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=23.7
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEe
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
.|.|+|+++|++||+++||+++.....
T Consensus 3 ~i~~~d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 3 GLTVSDLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred ceeeCCHHHHHHHHHhccCCEEEEeec
Confidence 378999999999999999999877653
No 66
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=97.80 E-value=2.3e-05 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.9
Q ss_pred eeecChHHHHHHHhhhcCCEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
|.|+|+++|++||+++|||++..+
T Consensus 9 l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 9 LGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred EecCCHHHHHHHHHhCcCcEEEEe
Confidence 789999999999999999998654
No 67
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=97.79 E-value=2.2e-05 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=21.2
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|.|.|+++|++||++ |||++..+
T Consensus 8 ~l~v~Dl~~s~~FY~~-lGl~~~~~ 31 (113)
T cd07267 8 RFEHPDLDKAERFLTD-FGLEVAAR 31 (113)
T ss_pred EEccCCHHHHHHHHHH-cCCEEEEe
Confidence 3789999999999999 99998655
No 68
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=97.79 E-value=2.5e-05 Score=44.20 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.8
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+|.|.|++++++||+++|||++..+.
T Consensus 5 ~l~v~d~~~~~~FY~~~lG~~~~~~~ 30 (114)
T cd07245 5 ALRVPDLEASRAFYTDVLGLEEGPRP 30 (114)
T ss_pred EEecCCHHHHHHHHHHccCCcccCcC
Confidence 47899999999999999999987553
No 69
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=97.77 E-value=2.1e-05 Score=46.34 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|+|+|+++|++||+++||++...+
T Consensus 6 ~l~v~d~~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 6 ALNVDDLEASIAFYSKLFGVEPTKV 30 (120)
T ss_pred EEEeCCHHHHHHHHHHHhCCeEecc
Confidence 3789999999999999999988654
No 70
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=97.76 E-value=2.4e-05 Score=45.47 Aligned_cols=26 Identities=38% Similarity=0.742 Sum_probs=23.1
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
.|.|.|+++|++||+++|||++..+.
T Consensus 8 ~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 8 VLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred EEEecCHHHHHHHHHHHhCceeeccc
Confidence 37899999999999999999997654
No 71
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=97.73 E-value=2.6e-05 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.3
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|.|+|+++|++||+++|||++..+
T Consensus 5 ~l~V~Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 5 TFSVSNLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred EEEECCHHHHHHHHHHhhCCEEecc
Confidence 3789999999999999999998653
No 72
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=97.71 E-value=3e-05 Score=45.65 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.9
Q ss_pred eeecChHHHHHHHhhhcCCEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
|.|.|+++|++||+++|||++..+
T Consensus 10 l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 10 LRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred EEcCCHHHHHHHHHhccCCEEecc
Confidence 789999999999999999998654
No 73
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.70 E-value=3.4e-05 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.1
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEe
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
|.|+|+++|++||++ |||++..+..
T Consensus 6 l~V~Dl~~s~~FY~~-lGf~~~~~~~ 30 (124)
T cd09012 6 LPVKDLEKSTAFYTA-LGFEFNPQFS 30 (124)
T ss_pred eecCCHHHHHHHHHH-CCCEEccccC
Confidence 789999999999976 9999875443
No 74
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.67 E-value=3.6e-05 Score=45.71 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|.|+|+++|++||++ |||++..+
T Consensus 6 ~l~v~Dl~~s~~FY~~-LGf~~~~~ 29 (113)
T cd08356 6 FIPAKDFAESKQFYQA-LGFELEWE 29 (113)
T ss_pred ccccccHHHHHHHHHH-hCCeeEec
Confidence 3789999999999987 99999765
No 75
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=97.60 E-value=6.9e-05 Score=44.36 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=23.3
Q ss_pred CeeecChHHHHHHHhhhc---CCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVL---GMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vL---G~~v~~~~ 26 (67)
+|+|.|+++|++||+++| ||++..+.
T Consensus 6 ~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 6 ELTVRDLERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCCEEEEee
Confidence 478999999999999999 99997764
No 76
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=97.56 E-value=5.6e-05 Score=44.52 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=19.9
Q ss_pred CeeecChHHHHHHHhhhcCCEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLK 24 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~ 24 (67)
+|.|+|+++|++||+ .|||++..
T Consensus 5 ~l~V~D~~~a~~FY~-~LGf~~~~ 27 (122)
T cd07235 5 GIVVADMAKSLDFYR-RLGFDFPE 27 (122)
T ss_pred EEEeccHHHHHHHHH-HhCceecC
Confidence 378999999999996 59999854
No 77
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=97.56 E-value=4.2e-05 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred eeecChHHHHHHHhhhcCCEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
|.|+|+++|++||+++|||++..+
T Consensus 9 l~V~Dl~~s~~FY~~~LGl~~~~~ 32 (286)
T TIGR03213 9 IGVSDVDAWREFATEVLGMMVASE 32 (286)
T ss_pred EEeCCHHHHHHHHHhccCcccccC
Confidence 789999999999999999998654
No 78
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.54 E-value=7.7e-05 Score=43.97 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.3
Q ss_pred CeeecChHHHHHHHhhh---cCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRV---LGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~v---LG~~v~~~~ 26 (67)
+|+|+|+++|++||+++ |||++..+.
T Consensus 5 ~l~v~d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 5 TLGVNDLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEecCcHHHHHHHHHHHHhhcCceEEeec
Confidence 48899999999999999 699987543
No 79
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=97.52 E-value=8.3e-05 Score=50.67 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.1
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+|.|+|+++|++||+++|||++..+.
T Consensus 9 ~l~V~Dle~s~~FY~~~LG~~~~~~~ 34 (303)
T TIGR03211 9 ELRVLDLEESLKHYTDVLGLEETGRD 34 (303)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEeeec
Confidence 37899999999999999999987653
No 80
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=97.51 E-value=0.00011 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=22.3
Q ss_pred eeecChHHHHHHHhhhcCCEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
|.|+|+++|++||+++|||++..+
T Consensus 10 l~v~Dl~~s~~FY~~vLGl~~~~~ 33 (294)
T TIGR02295 10 LRVTDLDKSREFYVDLLGFRETES 33 (294)
T ss_pred EEeCCHHHHHHHHHHccCCEEEEe
Confidence 789999999999999999998765
No 81
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=97.49 E-value=0.00012 Score=51.17 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=31.8
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCCCCC
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTAS 45 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~~~~ 45 (67)
|+|.|++++.+||+++|||++..+.. .-.|+..|+...
T Consensus 174 L~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHH 211 (265)
T COG2514 174 LKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHH 211 (265)
T ss_pred EEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcce
Confidence 78999999999999999999988722 236888888764
No 82
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=97.49 E-value=0.0001 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.528 Sum_probs=20.8
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEE
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.|.|.|+++|++||+ +|||++..+
T Consensus 7 ~l~v~d~~~s~~FY~-~lG~~~~~~ 30 (112)
T cd08344 7 ALEVPDLEVARRFYE-AFGLDVREE 30 (112)
T ss_pred EEecCCHHHHHHHHH-HhCCcEEee
Confidence 378999999999997 799999654
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=97.42 E-value=0.00028 Score=46.16 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=28.4
Q ss_pred eeec--ChHHHHHHHhhhcCCEEEEEEeCCC--CeEEEEEecc
Q 036707 2 FRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGY 40 (67)
Q Consensus 2 l~V~--Dle~Si~FY~~vLG~~v~~~~~~~~--~~~~l~fL~~ 40 (67)
+.|. |+++|++||+++|||++..+...++ .+....++..
T Consensus 9 i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~ 51 (191)
T cd07250 9 GNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLAS 51 (191)
T ss_pred eecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEEC
Confidence 6788 9999999999999999977665332 2334444444
No 84
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=97.42 E-value=0.0002 Score=45.28 Aligned_cols=34 Identities=32% Similarity=0.724 Sum_probs=25.5
Q ss_pred CeeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEecc
Q 036707 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 40 (67)
Q Consensus 1 ~l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~ 40 (67)
.|||.|-+.-++||+++|||+++.+.. .+++|+.
T Consensus 5 vlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~ 38 (125)
T PF14506_consen 5 VLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGD 38 (125)
T ss_dssp EEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-
T ss_pred eEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecC
Confidence 389999999999999999999988743 3456654
No 85
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=97.14 E-value=0.0018 Score=45.44 Aligned_cols=26 Identities=27% Similarity=0.650 Sum_probs=23.6
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEe
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
|+|+|++.+..||+++||+++..+..
T Consensus 16 L~vrdL~~~~~FY~~ilGL~v~~~~~ 41 (265)
T COG2514 16 LNVRDLDSMTSFYQEILGLQVLEETD 41 (265)
T ss_pred EEeccHHHHHHHHHHhhCCeeeeccC
Confidence 79999999999999999999987643
No 86
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=96.90 E-value=0.0042 Score=37.51 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.9
Q ss_pred eee-cChHHHHHHHhhhcCCEEEEEEe
Q 036707 2 FRI-KDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 2 l~V-~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
|.+ .|.+++++||+++||.++.....
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~~ 31 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLTR 31 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEEE
Confidence 677 89999999999999999987653
No 87
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=96.89 E-value=0.0022 Score=40.56 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.8
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEe
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
|.|.|++++++||.+++|-+.....+
T Consensus 15 i~~~D~~ra~~FY~~vFgW~~~~~~~ 40 (127)
T COG3324 15 LPVSDLERAKAFYEKVFGWTFEDYFD 40 (127)
T ss_pred eecCCHHHHHHHHHHhhCceeccccc
Confidence 67999999999999999999876544
No 88
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=96.88 E-value=0.0004 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=22.0
Q ss_pred eeecChHHHHHHHhhhcCCEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
|.|.|++++.+||+++||++.-+.
T Consensus 10 ~pV~Dl~~tr~FYgevlG~~~GRs 33 (138)
T COG3565 10 IPVNDLDETRRFYGEVLGCKEGRS 33 (138)
T ss_pred eeccccHHHHhhhhhhcccccccc
Confidence 789999999999999999998664
No 89
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=96.33 E-value=0.0032 Score=44.52 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=22.8
Q ss_pred eeec--ChHHHHHHHhhhcCCEEEEEEe
Q 036707 2 FRIK--DPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 2 l~V~--Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
|.|. |+++|+.||+++|||++..+..
T Consensus 164 i~V~~~dl~~~~~fY~~~lGf~~~~~~~ 191 (353)
T TIGR01263 164 GNVYRGQMEPWAEFYEKIFGFREIRSFD 191 (353)
T ss_pred cccCCccHHHHHHHHHHHhCCceeeEEE
Confidence 6677 9999999999999999977655
No 90
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.022 Score=36.29 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=25.3
Q ss_pred eeec-ChHHHHHHHhhhcCCEEEEEEeCCC
Q 036707 2 FRIK-DPKVSLDFYSRVLGMSLLKRLDFPE 30 (67)
Q Consensus 2 l~V~-Dle~Si~FY~~vLG~~v~~~~~~~~ 30 (67)
|.++ |-+++++||+++||.++..+...++
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d 35 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGD 35 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCc
Confidence 5677 9999999999999999988877655
No 91
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=95.64 E-value=0.0055 Score=39.10 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.2
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
|.|+||++|.+||+ .||++.-.++
T Consensus 9 LPVkDL~~S~~Fy~-alGfk~Npq~ 32 (133)
T COG3607 9 LPVKDLEASKAFYT-ALGFKFNPQF 32 (133)
T ss_pred cchhhHHHHHHHHH-HhCcccCCCc
Confidence 78999999999995 6899985544
No 92
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=95.52 E-value=0.037 Score=39.09 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=22.3
Q ss_pred eeecChHHHHHHHhhhcCCEEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
|.|+|++++++||++.|||+...+
T Consensus 8 ~~V~D~~~a~~~y~~~LGf~~~~~ 31 (353)
T TIGR01263 8 FYVGDAKQAAYYYFTRFGFEKVAK 31 (353)
T ss_pred EEeCCHHHHHHHHHHhcCCcEEEE
Confidence 789999999999999999999766
No 93
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=95.44 E-value=0.011 Score=43.03 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=19.2
Q ss_pred eeecChHHHHHHHhhhcCCEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSL 22 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v 22 (67)
|.|+|+++|++||+.+||+..
T Consensus 253 LpV~DL~rS~~FYt~LF~~n~ 273 (357)
T PRK01037 253 LEVQDLRRAKKFYSKMFGLEC 273 (357)
T ss_pred eeeCCHHHHHHHHHHHhCCCC
Confidence 789999999999999988874
No 94
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=94.76 E-value=0.059 Score=34.26 Aligned_cols=39 Identities=10% Similarity=0.291 Sum_probs=19.4
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEecc
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 40 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~ 40 (67)
+.|+|+++++++|++.|||++...-..+..+..+..+-+
T Consensus 6 ~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f 44 (175)
T PF13468_consen 6 IAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPF 44 (175)
T ss_dssp EE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-
T ss_pred EEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEee
Confidence 679999999999999999999877666653444444333
No 95
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=93.50 E-value=0.13 Score=37.84 Aligned_cols=41 Identities=5% Similarity=0.124 Sum_probs=28.6
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEeCCC-----CeEEEEEeccCC
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----MKFSLYFLGYED 42 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~~~~-----~~~~l~fL~~g~ 42 (67)
+.|.||+.++.||+++|||+.....+.+. .+....++..++
T Consensus 186 iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~ 231 (398)
T PLN02875 186 GNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN 231 (398)
T ss_pred echhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC
Confidence 56789999999999999998876554321 123455555544
No 96
>PRK10148 hypothetical protein; Provisional
Probab=91.37 E-value=0.4 Score=30.25 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=20.3
Q ss_pred eeec-ChHHHHHHHhhhcCCEEEEEE
Q 036707 2 FRIK-DPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 2 l~V~-Dle~Si~FY~~vLG~~v~~~~ 26 (67)
|.+. |-+++++||+++||-++..+.
T Consensus 7 L~f~g~a~eAi~FY~~~Fgae~~~~~ 32 (147)
T PRK10148 7 LSFAGNCADAIAYYQQTLGAELLYKI 32 (147)
T ss_pred EEeCCCHHHHHHHHHHHhCCEEEEEE
Confidence 4553 799999999999999886543
No 97
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=87.80 E-value=0.17 Score=30.95 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=6.4
Q ss_pred eeecChHHHHHHHhhhcC
Q 036707 2 FRIKDPKVSLDFYSRVLG 19 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG 19 (67)
|+|.| ++|..||++++|
T Consensus 11 LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 11 LNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp EEE-T--T---S--H---
T ss_pred EeCCC-hhHHHHHHhccc
Confidence 78999 889999999886
No 98
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=80.87 E-value=2.8 Score=25.40 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=13.7
Q ss_pred cChHHHHHHHhhhcCCE
Q 036707 5 KDPKVSLDFYSRVLGMS 21 (67)
Q Consensus 5 ~Dle~Si~FY~~vLG~~ 21 (67)
.+-+++++||.++||-.
T Consensus 11 g~a~eA~~fY~~vf~~~ 27 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGS 27 (116)
T ss_dssp S-HHHHHHHHHHHSTTE
T ss_pred CCHHHHHHHHHHHcCCC
Confidence 36789999999999953
No 99
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=79.82 E-value=5 Score=23.91 Aligned_cols=28 Identities=18% Similarity=0.517 Sum_probs=23.1
Q ss_pred HHHHHhhhcCCEEEEEEeCCCCeEEEEE
Q 036707 10 SLDFYSRVLGMSLLKRLDFPEMKFSLYF 37 (67)
Q Consensus 10 Si~FY~~vLG~~v~~~~~~~~~~~~l~f 37 (67)
+.+|+++-||+.+.-.-.+++.+-..+|
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed~SC~~~F 76 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFEDFSCQMIF 76 (86)
T ss_pred hHHHHHhccCCceEecCCCcCcEEEEEc
Confidence 6799999999999888777776666666
No 100
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.41 E-value=6.2 Score=27.58 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=23.9
Q ss_pred cChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCC
Q 036707 5 KDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 42 (67)
Q Consensus 5 ~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~ 42 (67)
.|+.+++.||.+.||+++..-. +....+.|-..++
T Consensus 145 a~~~e~a~wy~dyLGleie~~h---gevikfiFTnIdp 179 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH---GEVIKFIFTNIDP 179 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc---CceEEEEEeccCC
Confidence 3777889999999999996432 2235556654443
No 101
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=66.34 E-value=16 Score=27.05 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=22.3
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEe
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
+.|.|..++..+|+..|||+.+....
T Consensus 6 f~v~da~~~~~~f~~~~GF~~~a~~~ 31 (398)
T PLN02875 6 FWCGDATNTARRFSWGLGMPLVAKSD 31 (398)
T ss_pred EEcCCHHHHHHHHHHhcCCCeEeecC
Confidence 56899999999999999999876543
No 102
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=63.37 E-value=5.9 Score=18.81 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=13.4
Q ss_pred ecChHHHHHHHhhhcCC
Q 036707 4 IKDPKVSLDFYSRVLGM 20 (67)
Q Consensus 4 V~Dle~Si~FY~~vLG~ 20 (67)
..|.++++++|++.|.+
T Consensus 12 ~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 46899999999998754
No 103
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=56.09 E-value=11 Score=27.82 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=22.7
Q ss_pred eecChHHHHHHHhhhcCCEEEEEEeCCC
Q 036707 3 RIKDPKVSLDFYSRVLGMSLLKRLDFPE 30 (67)
Q Consensus 3 ~V~Dle~Si~FY~~vLG~~v~~~~~~~~ 30 (67)
....|+....||+.+||++.++..+.++
T Consensus 176 ~~~~md~w~~FY~~if~~~~~~~fdi~~ 203 (363)
T COG3185 176 KAGQMDTWVLFYESLFGFREIQYFDIPG 203 (363)
T ss_pred chhhHHHHHHHHHHHhCccceeeEeccC
Confidence 3457899999999999999988766533
No 104
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=53.01 E-value=26 Score=20.96 Aligned_cols=26 Identities=19% Similarity=0.508 Sum_probs=19.1
Q ss_pred ChHHHHHHHhhhcCCEEEEEEeCCCCe
Q 036707 6 DPKVSLDFYSRVLGMSLLKRLDFPEMK 32 (67)
Q Consensus 6 Dle~Si~FY~~vLG~~v~~~~~~~~~~ 32 (67)
|=.+|++.|+ .+||+.+.+.+.++..
T Consensus 123 ~N~~~~~~~~-k~GF~~~g~~~~~~~~ 148 (152)
T PF13523_consen 123 DNTRAIRLYE-KAGFRKVGEFEFPDKP 148 (152)
T ss_dssp T-HHHHHHHH-HTT-EEEEEEEESSEE
T ss_pred CCHHHHHHHH-HcCCEEeeEEECCCCe
Confidence 4568999997 5899999988776644
No 105
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=52.15 E-value=7 Score=20.89 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=13.9
Q ss_pred eecChHHHHHHHhhhcC
Q 036707 3 RIKDPKVSLDFYSRVLG 19 (67)
Q Consensus 3 ~V~Dle~Si~FY~~vLG 19 (67)
+.+.+..-++||++-|-
T Consensus 36 ~~k~P~~vI~FYE~~l~ 52 (54)
T cd00034 36 NVKCPLLVISFYEEHLT 52 (54)
T ss_pred HhhCcHHHHHHHHHhcc
Confidence 46788999999998763
No 106
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=50.15 E-value=26 Score=21.16 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=16.6
Q ss_pred ChHHHHHHHhhhcCCEEEEEEe
Q 036707 6 DPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 6 Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
+-..++.||++ +||++..+..
T Consensus 136 ~N~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 136 SNEAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred CChHHHHHHHH-cCCEEEeeeh
Confidence 45599999976 9999977643
No 107
>smart00300 ChSh Chromo Shadow Domain.
Probab=50.01 E-value=7.5 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.3
Q ss_pred eecChHHHHHHHhhhcCC
Q 036707 3 RIKDPKVSLDFYSRVLGM 20 (67)
Q Consensus 3 ~V~Dle~Si~FY~~vLG~ 20 (67)
+++.+...|+||++-|-+
T Consensus 42 ~~k~P~~vI~FYE~~l~~ 59 (61)
T smart00300 42 NVKCPQKVIRFYESHLTF 59 (61)
T ss_pred HHHChHHHHHHHHHhCcc
Confidence 457889999999987643
No 108
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=47.32 E-value=46 Score=18.74 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=14.3
Q ss_pred cChHHHHHHHhhhcCCEEEEE
Q 036707 5 KDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 5 ~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.+-..|+++|+ .|||+...+
T Consensus 63 ~~N~~s~~ly~-klGf~~~~~ 82 (86)
T PF08445_consen 63 ADNEASIRLYE-KLGFREIEE 82 (86)
T ss_dssp TT-HHHHHHHH-HCT-EEEEE
T ss_pred CCCHHHHHHHH-HcCCEEEEE
Confidence 46678999995 589998754
No 109
>PF15067 FAM124: FAM124 family
Probab=46.00 E-value=19 Score=25.11 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=19.8
Q ss_pred eeec--ChHHHHHHHhhhcCCEEEEE
Q 036707 2 FRIK--DPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 2 l~V~--Dle~Si~FY~~vLG~~v~~~ 25 (67)
|-|+ |.+.+++||+-+|+=+...+
T Consensus 134 ly~~~~N~~d~vr~Yelil~~~~~~~ 159 (236)
T PF15067_consen 134 LYCSFDNYEDMVRFYELILQREPTQQ 159 (236)
T ss_pred EEecCCCHHHHHHHHHHHhccCccee
Confidence 4566 99999999999999877544
No 110
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=40.31 E-value=24 Score=15.82 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=11.6
Q ss_pred cChHHHHHHHhhhcC
Q 036707 5 KDPKVSLDFYSRVLG 19 (67)
Q Consensus 5 ~Dle~Si~FY~~vLG 19 (67)
.+.+.++..|+++|-
T Consensus 15 ~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 15 GDYEEALEYYQRALE 29 (34)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH
Confidence 578999999998763
No 111
>PF11782 DUF3319: Protein of unknown function (DUF3319); InterPro: IPR021753 This is a family of short bacterial proteins, a few of which are annotated as being minor tail protein. Otherwise the function is unknown.
Probab=38.67 E-value=20 Score=21.48 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=10.1
Q ss_pred ChHHHHHHHhhh
Q 036707 6 DPKVSLDFYSRV 17 (67)
Q Consensus 6 Dle~Si~FY~~v 17 (67)
-+.+||+|||+.
T Consensus 36 ~vKksIdww~dt 47 (88)
T PF11782_consen 36 EVKKSIDWWCDT 47 (88)
T ss_pred HHHHHHHHHHhc
Confidence 468999999983
No 112
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=36.33 E-value=26 Score=18.97 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=12.6
Q ss_pred ecChHHHHHHHhhhcC
Q 036707 4 IKDPKVSLDFYSRVLG 19 (67)
Q Consensus 4 V~Dle~Si~FY~~vLG 19 (67)
.+-+...++||++-|=
T Consensus 40 ~k~Pq~vI~FYE~~l~ 55 (58)
T PF01393_consen 40 EKCPQKVIKFYESHLV 55 (58)
T ss_dssp HHSHHHHHHHHHHTCE
T ss_pred HHCcHHHHHHHHHHee
Confidence 3568889999998764
No 113
>PRK10514 putative acetyltransferase; Provisional
Probab=36.04 E-value=69 Score=18.73 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=15.2
Q ss_pred ChHHHHHHHhhhcCCEEEEEE
Q 036707 6 DPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 6 Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+-.+|++||+ .+||+...+.
T Consensus 108 ~N~~a~~~ye-k~Gf~~~~~~ 127 (145)
T PRK10514 108 QNEQAVGFYK-KMGFKVTGRS 127 (145)
T ss_pred CCHHHHHHHH-HCCCEEeccc
Confidence 3468999995 6899986543
No 114
>PHA03397 vlf-1 very late expression factor 1; Provisional
Probab=33.69 E-value=25 Score=25.75 Aligned_cols=16 Identities=19% Similarity=0.766 Sum_probs=14.4
Q ss_pred ChHHHHHHHhhhcCCE
Q 036707 6 DPKVSLDFYSRVLGMS 21 (67)
Q Consensus 6 Dle~Si~FY~~vLG~~ 21 (67)
-|..++.|||..+|+.
T Consensus 124 ~l~~~~~~y~~~~~l~ 139 (363)
T PHA03397 124 TLQLTINFYTNAMGLP 139 (363)
T ss_pred HHHHHHHHHHccCCCC
Confidence 4788999999999988
No 115
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=33.54 E-value=29 Score=18.89 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=9.5
Q ss_pred HHHHHHHhhhcC
Q 036707 8 KVSLDFYSRVLG 19 (67)
Q Consensus 8 e~Si~FY~~vLG 19 (67)
..|++||.+.|-
T Consensus 16 q~sve~yk~kl~ 27 (57)
T PF04761_consen 16 QESVEFYKEKLS 27 (57)
T ss_pred HHHHHHHHHHHH
Confidence 578999988763
No 116
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=33.08 E-value=40 Score=14.90 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=12.6
Q ss_pred ecChHHHHHHHhhhcC
Q 036707 4 IKDPKVSLDFYSRVLG 19 (67)
Q Consensus 4 V~Dle~Si~FY~~vLG 19 (67)
..|.+.|++.|.+++-
T Consensus 14 ~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 14 LGDYEEALEYFEKALE 29 (34)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3588999999988763
No 117
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=31.48 E-value=63 Score=19.06 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=16.7
Q ss_pred cChHHHHHHHhhhcCCEEEEEEe
Q 036707 5 KDPKVSLDFYSRVLGMSLLKRLD 27 (67)
Q Consensus 5 ~Dle~Si~FY~~vLG~~v~~~~~ 27 (67)
.+=.+|++||+ .+||+...+..
T Consensus 120 ~~N~~~i~~~~-~~GF~~~g~~~ 141 (155)
T PF13420_consen 120 SSNEKAINFYK-KLGFEEEGELK 141 (155)
T ss_dssp TT-HHHHHHHH-HTTEEEEEEEE
T ss_pred cCCHHHHHHHH-hCCCEEEEEEe
Confidence 45678999995 59999987654
No 118
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=31.03 E-value=1.3e+02 Score=21.40 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=29.8
Q ss_pred eeecChHHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCC
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 42 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~ 42 (67)
+-+.|.+....|..+.||+.++-......++..++.+..++
T Consensus 138 ~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d 178 (318)
T COG0189 138 LITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDAD 178 (318)
T ss_pred EEEcCHHHHHHHHHHhcCCCEEEeeCCCCCccceEEecCCC
Confidence 45678899999999999999988766555554555554444
No 119
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=30.48 E-value=46 Score=14.78 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=11.0
Q ss_pred cChHHHHHHHhhh
Q 036707 5 KDPKVSLDFYSRV 17 (67)
Q Consensus 5 ~Dle~Si~FY~~v 17 (67)
+|.++++.||+..
T Consensus 19 ~d~~~A~~~~~~A 31 (36)
T smart00671 19 KDLEKALEYYKKA 31 (36)
T ss_pred cCHHHHHHHHHHH
Confidence 5899999999875
No 120
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=30.42 E-value=42 Score=20.71 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=14.4
Q ss_pred ChHHHHHHH--hhhcCCEEE
Q 036707 6 DPKVSLDFY--SRVLGMSLL 23 (67)
Q Consensus 6 Dle~Si~FY--~~vLG~~v~ 23 (67)
.++-+.+|| ++.|||.-.
T Consensus 25 s~~~Ar~FFdLQDmLGfDKa 44 (138)
T PF03634_consen 25 SLEIARKFFDLQDMLGFDKA 44 (138)
T ss_pred CHHHHHHHHHHHHHhcCCCC
Confidence 588899998 688998653
No 121
>PTZ00330 acetyltransferase; Provisional
Probab=29.75 E-value=69 Score=18.66 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=13.9
Q ss_pred hHHHHHHHhhhcCCEEEEE
Q 036707 7 PKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 7 le~Si~FY~~vLG~~v~~~ 25 (67)
-..|++||+ .+||+...+
T Consensus 124 n~~a~~~y~-k~GF~~~~~ 141 (147)
T PTZ00330 124 TEDMVAFYK-KLGFRACER 141 (147)
T ss_pred ChHHHHHHH-HCCCEEece
Confidence 367999995 689998653
No 122
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=27.32 E-value=53 Score=14.31 Aligned_cols=16 Identities=6% Similarity=0.482 Sum_probs=11.7
Q ss_pred ecChHHHHHHHhhhcC
Q 036707 4 IKDPKVSLDFYSRVLG 19 (67)
Q Consensus 4 V~Dle~Si~FY~~vLG 19 (67)
..+.+++++.|++++-
T Consensus 14 ~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 14 LGNYEEAIEYFEKALE 29 (34)
T ss_dssp TT-HHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 3578899999988763
No 123
>PRK10562 putative acetyltransferase; Provisional
Probab=27.26 E-value=1.1e+02 Score=18.09 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=15.8
Q ss_pred cChHHHHHHHhhhcCCEEEEEE
Q 036707 5 KDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 5 ~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
.+=..|++||+ -+||+.....
T Consensus 106 ~~N~~s~~~y~-k~Gf~~~~~~ 126 (145)
T PRK10562 106 QKNQRAVNFYH-AQGFRIVDSA 126 (145)
T ss_pred cCChHHHHHHH-HCCCEEcccc
Confidence 34568999996 5899997654
No 124
>PHA02503 putative transcription regulator; Provisional
Probab=27.16 E-value=44 Score=18.16 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=8.9
Q ss_pred HHHHHHHhhhc
Q 036707 8 KVSLDFYSRVL 18 (67)
Q Consensus 8 e~Si~FY~~vL 18 (67)
..|++||.+.|
T Consensus 16 q~sve~yke~l 26 (57)
T PHA02503 16 QESVEFYKEKL 26 (57)
T ss_pred HHHHHHHHHHH
Confidence 57899998876
No 125
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=26.50 E-value=35 Score=14.44 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=12.1
Q ss_pred ecChHHHHHHHhhhcCC
Q 036707 4 IKDPKVSLDFYSRVLGM 20 (67)
Q Consensus 4 V~Dle~Si~FY~~vLG~ 20 (67)
+..++..++|++ .+|+
T Consensus 15 ~~~l~~~~~~l~-~~g~ 30 (31)
T smart00733 15 EKKLKPKVEFLK-ELGF 30 (31)
T ss_pred HHHhhHHHHHHH-HcCC
Confidence 456778889998 6776
No 126
>PRK13688 hypothetical protein; Provisional
Probab=26.19 E-value=1.7e+02 Score=18.41 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.2
Q ss_pred HHHHHHHhhhcCCEEEEEE
Q 036707 8 KVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 8 e~Si~FY~~vLG~~v~~~~ 26 (67)
..+++||. .+||+...+.
T Consensus 117 ~~a~~FY~-k~GF~~~~~~ 134 (156)
T PRK13688 117 NKSKDFWL-KLGFTPVEYK 134 (156)
T ss_pred cchHHHHH-hCCCEEeEEe
Confidence 35789996 6999988765
No 127
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=25.37 E-value=86 Score=18.43 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=16.1
Q ss_pred cChHHHHHHHhhhcCCEEEEEE
Q 036707 5 KDPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 5 ~Dle~Si~FY~~vLG~~v~~~~ 26 (67)
.+=.+|++||+ .+||+.....
T Consensus 119 ~~N~~s~~~y~-k~Gf~~~g~~ 139 (156)
T TIGR03585 119 EFNNKALKLYE-KFGFEREGVF 139 (156)
T ss_pred ccCHHHHHHHH-HcCCeEeeee
Confidence 45678999995 5899986643
No 128
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=25.22 E-value=32 Score=18.27 Aligned_cols=17 Identities=12% Similarity=0.389 Sum_probs=13.2
Q ss_pred eeecChHHHHHHHhhhc
Q 036707 2 FRIKDPKVSLDFYSRVL 18 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vL 18 (67)
|.+++.+++.+||...+
T Consensus 17 iP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 17 IPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CccccccchhHHHHHHH
Confidence 44578899999998754
No 129
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=24.76 E-value=39 Score=15.41 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=10.7
Q ss_pred cChHHHHHHHhhh
Q 036707 5 KDPKVSLDFYSRV 17 (67)
Q Consensus 5 ~Dle~Si~FY~~v 17 (67)
+|+++++.||++.
T Consensus 22 ~d~~~A~~~~~~A 34 (39)
T PF08238_consen 22 KDYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccchHHHHHHH
Confidence 4889999999864
No 130
>PHA00212 putative transcription regulator
Probab=24.54 E-value=51 Score=18.21 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=8.9
Q ss_pred HHHHHHHhhhc
Q 036707 8 KVSLDFYSRVL 18 (67)
Q Consensus 8 e~Si~FY~~vL 18 (67)
..|++||.+.|
T Consensus 18 q~sve~yk~~l 28 (63)
T PHA00212 18 QHSVEWYKKQL 28 (63)
T ss_pred HHHHHHHHHHH
Confidence 57899998876
No 131
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=24.11 E-value=95 Score=18.26 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=15.5
Q ss_pred ChHHHHHHHhhhcCCEEEEEE
Q 036707 6 DPKVSLDFYSRVLGMSLLKRL 26 (67)
Q Consensus 6 Dle~Si~FY~~vLG~~v~~~~ 26 (67)
+-.+|++||+ -+||+.....
T Consensus 123 ~N~~a~~~y~-k~GF~~~g~~ 142 (162)
T PRK10140 123 DNAPAIKVYK-KYGFEIEGTG 142 (162)
T ss_pred CCHHHHHHHH-HCCCEEEeec
Confidence 4568999995 6999986653
No 132
>PF05100 Phage_tail_L: Phage minor tail protein L ; InterPro: IPR006487 This entry is represented by Bacteriophage lambda, GpL, a minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.07 E-value=1.2e+02 Score=20.73 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=19.3
Q ss_pred eeecChHHHH----HHHhhhcCCEEEEEEe
Q 036707 2 FRIKDPKVSL----DFYSRVLGMSLLKRLD 27 (67)
Q Consensus 2 l~V~Dle~Si----~FY~~vLG~~v~~~~~ 27 (67)
|+|.|+.-++ .-|.+.+|-+|+++..
T Consensus 51 LtVsNi~G~ital~~~~~dlvgAkV~r~~t 80 (206)
T PF05100_consen 51 LTVSNIDGLITALCLQFDDLVGAKVTRRRT 80 (206)
T ss_pred EEEecccchHHHHHHHhCcccCcEEEEEEE
Confidence 6777766554 5677899999988764
No 133
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=23.21 E-value=91 Score=22.92 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=27.6
Q ss_pred eeecChHHHHHHHhhhcCCEEEE-EEeCCCCeEEEEEeccCCCCCCCC
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLK-RLDFPEMKFSLYFLGYEDTASAPA 48 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~-~~~~~~~~~~l~fL~~g~~~~~~~ 48 (67)
+||+|+.+.++ .+|+...+ .|. |.|.-.||.+|+....+.
T Consensus 342 ~rv~dlk~~lr----~~~~~pm~iswk---g~~~k~flh~~~~~~~~~ 382 (396)
T KOG4410|consen 342 IRVKDLKSELR----KRECTPMSISWK---GHFGKCFLHFGNRKGVPS 382 (396)
T ss_pred cchHHHHHHHH----hcCCCceeEeee---cCCcceeEecCCccCCCC
Confidence 68999999987 56666543 443 345668999998754433
No 134
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=21.88 E-value=1.7e+02 Score=21.38 Aligned_cols=22 Identities=27% Similarity=0.461 Sum_probs=17.4
Q ss_pred ecChHHHHHHHhhhcCCEEEEE
Q 036707 4 IKDPKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 4 V~Dle~Si~FY~~vLG~~v~~~ 25 (67)
.+|++.-+.||+++++|.+.-.
T Consensus 148 ~r~l~sLv~fy~~i~~~~v~ie 169 (319)
T KOG2640|consen 148 ERDLASLVNFYTEITPMSVLIE 169 (319)
T ss_pred cccHHHHHHHHHhhccchhccc
Confidence 3688999999999998665443
No 135
>PF07901 DUF1672: Protein of unknown function (DUF1672); InterPro: IPR012873 This family is composed of hypothetical bacterial proteins of unknown function.
Probab=20.75 E-value=2.5e+02 Score=20.06 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCCEEEEEEeCCCCeEEEEEeccCC
Q 036707 8 KVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 42 (67)
Q Consensus 8 e~Si~FY~~vLG~~v~~~~~~~~~~~~l~fL~~g~ 42 (67)
+++++|+.+-+++.|.-....+.+....+|+.+.+
T Consensus 40 k~~~~yfkd~y~t~VKv~NVVga~dga~V~Veced 74 (277)
T PF07901_consen 40 KRAIQYFKDNYKTDVKVTNVVGARDGAVVYVECED 74 (277)
T ss_pred HHHHHHHHHhcCceeEEEEEEccCCcEEEEEEecC
Confidence 46889999999999987777777778889998875
No 136
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=20.64 E-value=82 Score=23.35 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.4
Q ss_pred eeecChHHHHHHHhhhcCCEEEE
Q 036707 2 FRIKDPKVSLDFYSRVLGMSLLK 24 (67)
Q Consensus 2 l~V~Dle~Si~FY~~vLG~~v~~ 24 (67)
+.|.|-..+.+|||.-|||+...
T Consensus 23 F~vgna~q~A~~y~~~fGfep~A 45 (381)
T KOG0638|consen 23 FWVGNAKQAARWYCSGFGFEPLA 45 (381)
T ss_pred EEecCcHHHHHHHHhhcCCcchh
Confidence 56889999999999999999865
No 137
>PRK10314 putative acyltransferase; Provisional
Probab=20.59 E-value=1e+02 Score=18.97 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=13.2
Q ss_pred hHHHHHHHhhhcCCEEEEE
Q 036707 7 PKVSLDFYSRVLGMSLLKR 25 (67)
Q Consensus 7 le~Si~FY~~vLG~~v~~~ 25 (67)
-..+..||++ +||+.+.+
T Consensus 117 ~~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 117 QAHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred HHHHHHHHHH-CCCEECCC
Confidence 3457899965 99988653
Done!