Query 036708
Match_columns 114
No_of_seqs 41 out of 43
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 04:41:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06364 DUF1068: Protein of u 100.0 1.2E-60 2.6E-65 369.2 12.6 106 1-106 71-176 (176)
2 KOG1823 DRIM (Down-regulated i 99.9 2.2E-23 4.7E-28 195.0 10.8 99 1-99 1262-1364(1364)
3 PF01187 MIF: Macrophage migra 45.1 19 0.00042 24.8 2.2 26 2-27 65-90 (114)
4 smart00182 CULLIN Cullin. 43.7 1.1E+02 0.0024 21.4 6.5 46 6-54 24-69 (142)
5 PRK06669 fliH flagellar assemb 41.9 1.6E+02 0.0036 23.2 7.2 14 88-101 116-129 (281)
6 PTZ00450 macrophage migration 40.7 21 0.00045 25.5 1.8 26 2-27 67-92 (113)
7 KOG3915 Transcription regulato 33.5 2.4E+02 0.0052 26.5 7.7 53 39-93 513-567 (641)
8 PRK06937 type III secretion sy 31.7 56 0.0012 24.8 3.0 30 28-57 22-51 (204)
9 PF11577 NEMO: NF-kappa-B esse 31.2 1.7E+02 0.0037 19.8 8.2 61 10-75 2-63 (68)
10 PF10642 Tom5: Mitochondrial i 28.9 71 0.0015 20.6 2.7 19 21-39 11-29 (49)
11 PRK09098 type III secretion sy 28.7 1.3E+02 0.0029 23.8 4.8 12 90-101 76-87 (233)
12 KOG1274 WD40 repeat protein [G 27.9 3.7E+02 0.008 26.6 8.2 76 10-90 737-812 (933)
13 PRK00409 recombination and DNA 24.6 5.8E+02 0.013 23.8 9.5 64 17-80 518-582 (782)
14 KOG1309 Suppressor of G2 allel 21.6 38 0.00082 27.6 0.5 16 3-18 150-165 (196)
15 KOG0994 Extracellular matrix g 21.3 4.9E+02 0.011 27.3 7.9 66 20-85 1627-1703(1758)
16 PF12128 DUF3584: Protein of u 20.6 6.7E+02 0.015 24.3 8.5 67 35-102 492-558 (1201)
No 1
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=100.00 E-value=1.2e-60 Score=369.19 Aligned_cols=106 Identities=76% Similarity=1.138 Sum_probs=104.6
Q ss_pred CCCCCccccHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHh
Q 036708 1 CAKHDPEVSEDTEKNFAELLTEELKLREAEALENQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALAAQ 80 (114)
Q Consensus 1 C~khdPev~eemeK~f~~LL~EELkLqe~~A~e~~~~ad~~lleAKk~aSQYQKEAdKCn~gmeTCEeAREkAEa~L~~q 80 (114)
||||||+|++||+|+|++||+|||+||++||+++++|+|++|+||||++|||||||||||+||||||+||||||++|++|
T Consensus 71 C~k~dPe~~eEmeK~~~~LL~EELkLqe~~A~e~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTCEeAREkaEa~L~~e 150 (176)
T PF06364_consen 71 CGKHDPEVSEEMEKNFVDLLSEELKLQEAVANENQRRADMALLEAKKMASQYQKEAEKCNSGMETCEEAREKAEAALVEE 150 (176)
T ss_pred hccCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCccccccccccc
Q 036708 81 KKLTATWEQRARQKGWREGITRSHAQ 106 (114)
Q Consensus 81 rKlTalWE~RARq~GW~~~~~~~~~~ 106 (114)
||||+|||+||||+||++|+++||++
T Consensus 151 ~KltalWE~RARq~GWk~~~~~~~~~ 176 (176)
T PF06364_consen 151 RKLTALWEQRARQLGWKEGAAKSHVK 176 (176)
T ss_pred HHHHHHHHHHHHHcCCCccccccccC
Confidence 99999999999999999999999864
No 2
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=99.89 E-value=2.2e-23 Score=194.99 Aligned_cols=99 Identities=61% Similarity=0.906 Sum_probs=97.6
Q ss_pred CCCCCccccHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--chhhhHHHHH--HHHHHH
Q 036708 1 CAKHDPEVSEDTEKNFAELLTEELKLREAEALENQQRADMALLEAKKLTSQYQKEADKCN--SGMETCEEAR--EKAEAA 76 (114)
Q Consensus 1 C~khdPev~eemeK~f~~LL~EELkLqe~~A~e~~~~ad~~lleAKk~aSQYQKEAdKCn--~gmeTCEeAR--EkAEa~ 76 (114)
||.+|||+++++++.|++||.+||++++.++.++..|.++.|++||..+|+|||++++|+ ++|++||.+| ++++|+
T Consensus 1262 ~~~~d~E~~~~~~~~yl~ll~~eLk~~e~q~l~~l~~e~i~lLe~K~~as~y~k~~~~c~~~a~e~~~er~rk~ap~~Aa 1341 (1364)
T KOG1823|consen 1262 CGQVDDEVNEEVEKAYLELLTEELKLEEAQALEKLRREDIGLLEAKVGASSYQKEAAKCNKQAAEERCERARKTAPAEAA 1341 (1364)
T ss_pred hcccCcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhcChhhhh
Confidence 899999999999999999999999999999999999999999999999999999999999 9999999999 999999
Q ss_pred HHHhhhhHHHHHHHHHHcCcccc
Q 036708 77 LAAQKKLTATWEQRARQKGWREG 99 (114)
Q Consensus 77 L~~qrKlTalWE~RARq~GW~~~ 99 (114)
+.+|||.+..||.|+|+.||+++
T Consensus 1342 ~~K~rK~~~k~E~Rkr~k~~~~~ 1364 (1364)
T KOG1823|consen 1342 LKKQRKHTRKWEERKRQKGWRGG 1364 (1364)
T ss_pred HHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999864
No 3
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=45.09 E-value=19 Score=24.84 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=21.8
Q ss_pred CCCCccccHHHHHhHHHHHHHHHHhH
Q 036708 2 AKHDPEVSEDTEKNFAELLTEELKLR 27 (114)
Q Consensus 2 ~khdPev~eemeK~f~~LL~EELkLq 27 (114)
|..||+.++.+-+.+.++|.++|++.
T Consensus 65 g~~~~~~n~~~s~~i~~~l~~~LgIp 90 (114)
T PF01187_consen 65 GGLDPEQNKKYSAAITEFLEEELGIP 90 (114)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHT--
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 55688999999999999999999875
No 4
>smart00182 CULLIN Cullin.
Probab=43.74 E-value=1.1e+02 Score=21.40 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=36.8
Q ss_pred ccccHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036708 6 PEVSEDTEKNFAELLTEELKLREAEALENQQRADMALLEAKKLTSQYQK 54 (114)
Q Consensus 6 Pev~eemeK~f~~LL~EELkLqe~~A~e~~~~ad~~lleAKk~aSQYQK 54 (114)
+..+.+.|+.++++|..+.+- ...-+.+.|=.-+..++.+.++|+.
T Consensus 24 ~~~~~~~E~~~i~~Lk~~~G~---~~~~kle~Ml~Di~~S~~l~~~f~~ 69 (142)
T smart00182 24 RSASDDAEENMITKLKQECGY---EFTSKLERMFRDISLSKDLNQSFKD 69 (142)
T ss_pred CCCCHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999876 4455667777778889999999984
No 5
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=41.92 E-value=1.6e+02 Score=23.19 Aligned_cols=14 Identities=29% Similarity=0.620 Sum_probs=8.2
Q ss_pred HHHHHHcCcccccc
Q 036708 88 EQRARQKGWREGIT 101 (114)
Q Consensus 88 E~RARq~GW~~~~~ 101 (114)
...|++.|+.+|..
T Consensus 116 ~~~a~~eGy~eG~~ 129 (281)
T PRK06669 116 IEEAKAEGYEEGYE 129 (281)
T ss_pred HHHHHHHHHHHHHH
Confidence 35566667666543
No 6
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=40.65 E-value=21 Score=25.53 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.8
Q ss_pred CCCCccccHHHHHhHHHHHHHHHHhH
Q 036708 2 AKHDPEVSEDTEKNFAELLTEELKLR 27 (114)
Q Consensus 2 ~khdPev~eemeK~f~~LL~EELkLq 27 (114)
|+.+|+.+.++-+.+.++|.++|.+-
T Consensus 67 G~~~~~~n~~~s~~i~~~l~~~LgIp 92 (113)
T PTZ00450 67 GEYAPSKPKMMTPRITAAITKECGIP 92 (113)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 56788999999999999999999763
No 7
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=33.51 E-value=2.4e+02 Score=26.49 Aligned_cols=53 Identities=30% Similarity=0.345 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhH--HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 036708 39 DMALLEAKKLTSQYQKEADKCNSGMETC--EEAREKAEAALAAQKKLTATWEQRARQ 93 (114)
Q Consensus 39 d~~lleAKk~aSQYQKEAdKCn~gmeTC--EeAREkAEa~L~~qrKlTalWE~RARq 93 (114)
++++-.|+-..-|+|-|-.- --|+-- .|-||.-|..|+.||||.++.+.|-+.
T Consensus 513 kva~dnar~qekQiq~Ek~E--Lkmd~lrerelreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 513 KVAIDNARAQEKQIQLEKTE--LKMDFLRERELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555544322 233333 468999999999999999999988764
No 8
>PRK06937 type III secretion system protein; Reviewed
Probab=31.66 E-value=56 Score=24.75 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036708 28 EAEALENQQRADMALLEAKKLTSQYQKEAD 57 (114)
Q Consensus 28 e~~A~e~~~~ad~~lleAKk~aSQYQKEAd 57 (114)
.+..-.....|+-.|..|+.-+.++..+|.
T Consensus 22 ~a~~~~~~~~A~~il~~A~~~A~~i~~~A~ 51 (204)
T PRK06937 22 RAEDYQSLLSAEELVEAARQRAEEIEAEAQ 51 (204)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666666666666664
No 9
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=31.16 E-value=1.7e+02 Score=19.78 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhchhhhHHHHHHHHHH
Q 036708 10 EDTEKNFAELLTEELKLREAEALENQQRADMALLEAKKLTSQYQKEAD-KCNSGMETCEEAREKAEA 75 (114)
Q Consensus 10 eemeK~f~~LL~EELkLqe~~A~e~~~~ad~~lleAKk~aSQYQKEAd-KCn~gmeTCEeAREkAEa 75 (114)
+||.+.|..||.|=-+|+++ .++.++.+-+==.--+.||.+.. .=..-..++.|||+.-+.
T Consensus 2 ~e~~~~l~~LL~EN~~LKea-----lrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~ 63 (68)
T PF11577_consen 2 EEMQQQLQELLQENQDLKEA-----LRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVER 63 (68)
T ss_dssp -----HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999865 55666666665555666665543 345667788999986553
No 10
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=28.90 E-value=71 Score=20.58 Aligned_cols=19 Identities=37% Similarity=0.307 Sum_probs=16.5
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 036708 21 TEELKLREAEALENQQRAD 39 (114)
Q Consensus 21 ~EELkLqe~~A~e~~~~ad 39 (114)
.||+|+.|.+|....+++-
T Consensus 11 ~eE~k~~e~~A~~Tvk~a~ 29 (49)
T PF10642_consen 11 EEEIKAAEAQANFTVKNAA 29 (49)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3799999999999988875
No 11
>PRK09098 type III secretion system protein HrpB; Validated
Probab=28.72 E-value=1.3e+02 Score=23.83 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=6.5
Q ss_pred HHHHcCcccccc
Q 036708 90 RARQKGWREGIT 101 (114)
Q Consensus 90 RARq~GW~~~~~ 101 (114)
++++.||.+|..
T Consensus 76 ~~~~~Gy~eG~~ 87 (233)
T PRK09098 76 RSARRGYAAGLR 87 (233)
T ss_pred HHHHHHHHHHHH
Confidence 355666665543
No 12
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=27.90 E-value=3.7e+02 Score=26.60 Aligned_cols=76 Identities=26% Similarity=0.209 Sum_probs=49.7
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHhhhhHHHHHH
Q 036708 10 EDTEKNFAELLTEELKLREAEALENQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALAAQKKLTATWEQ 89 (114)
Q Consensus 10 eemeK~f~~LL~EELkLqe~~A~e~~~~ad~~lleAKk~aSQYQKEAdKCn~gmeTCEeAREkAEa~L~~qrKlTalWE~ 89 (114)
|++.|.|+..-..|-.-+..+... |.+++.+-..+=-|-....+=--.---||.|+.+|.+...-.-+++-+||.
T Consensus 737 ed~ik~~a~s~~~e~e~~~~Ev~~-----~~a~~~liq~ac~yas~~r~~~L~e~l~e~~~~~aa~~~a~~~~~~~~ae~ 811 (933)
T KOG1274|consen 737 EDKIKLFAVSTALEEEYRRLEVAS-----DLATLTLIQSACKYASKNRVLALAEKLYELASLRAAASAARKQNLTEAAEK 811 (933)
T ss_pred hhHHhhhhhhhhhhhHHHHHHHHH-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHHH
Confidence 445555555544444443333322 245555555555666666665556667999999999999999999999986
Q ss_pred H
Q 036708 90 R 90 (114)
Q Consensus 90 R 90 (114)
=
T Consensus 812 ~ 812 (933)
T KOG1274|consen 812 I 812 (933)
T ss_pred H
Confidence 3
No 13
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.64 E-value=5.8e+02 Score=23.81 Aligned_cols=64 Identities=25% Similarity=0.287 Sum_probs=37.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-hhHHHHHHHHHHHHHHh
Q 036708 17 AELLTEELKLREAEALENQQRADMALLEAKKLTSQYQKEADKCNSGM-ETCEEAREKAEAALAAQ 80 (114)
Q Consensus 17 ~~LL~EELkLqe~~A~e~~~~ad~~lleAKk~aSQYQKEAdKCn~gm-eTCEeAREkAEa~L~~q 80 (114)
++-|.+.|.-++...++..+.+...+.++.++-.+|.++-++=...- .-=++|++.|+..|.+-
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a 582 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEA 582 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666777777777777777777777777665533222 22344444444444433
No 14
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=21.64 E-value=38 Score=27.59 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.0
Q ss_pred CCCccccHHHHHhHHH
Q 036708 3 KHDPEVSEDTEKNFAE 18 (114)
Q Consensus 3 khdPev~eemeK~f~~ 18 (114)
.-||||+.-|.|+|.+
T Consensus 150 ~addDvrRAM~KSf~E 165 (196)
T KOG1309|consen 150 DADDDVRRAMMKSFSE 165 (196)
T ss_pred cCCHHHHHHHHhhhhh
Confidence 3589999999999986
No 15
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.32 E-value=4.9e+02 Score=27.31 Aligned_cols=66 Identities=33% Similarity=0.354 Sum_probs=38.8
Q ss_pred HHHHHHhHHH----HHHHHHHHHHHHH---HHHHH----HHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHhhhhHH
Q 036708 20 LTEELKLREA----EALENQQRADMAL---LEAKK----LTSQYQKEADKCNSGMETCEEAREKAEAALAAQKKLTA 85 (114)
Q Consensus 20 L~EELkLqe~----~A~e~~~~ad~~l---leAKk----~aSQYQKEAdKCn~gmeTCEeAREkAEa~L~~qrKlTa 85 (114)
+-||||.+-+ .|.....-++.+. ++|+. +-++|++--.-=-.-|+--..||+|||..+.+-+||+.
T Consensus 1627 ~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~ 1703 (1758)
T KOG0994|consen 1627 RMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLG 1703 (1758)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 4466666543 3333344444333 33333 44455544333445688889999999998888777764
No 16
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.61 E-value=6.7e+02 Score=24.32 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCccccccc
Q 036708 35 QQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALAAQKKLTATWEQRARQKGWREGITR 102 (114)
Q Consensus 35 ~~~ad~~lleAKk~aSQYQKEAdKCn~gmeTCEeAREkAEa~L~~qrKlTalWE~RARq~GW~~~~~~ 102 (114)
..++...+.++++...+=+.+..++...+..+++........|.- .+=|-+.=+|..--||.+.++|
T Consensus 492 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p-~~gSL~~fL~~~~p~We~tIGK 558 (1201)
T PF12128_consen 492 VEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDP-QKGSLLEFLRKNKPGWEQTIGK 558 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCcHHHHHHhCCCcHHHHhHh
Confidence 333444444444444444445555555555555555444444332 2445566678888999998774
Done!