Query 036708
Match_columns 114
No_of_seqs 41 out of 43
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 07:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jtt_C Calcyclin-binding prote 30.2 17 0.00058 21.2 0.8 16 3-18 18-33 (35)
2 3djh_A Macrophage migration in 28.6 27 0.00092 22.8 1.7 26 2-27 65-90 (114)
3 3fwu_A Macrophage migration in 24.7 44 0.0015 22.8 2.3 26 2-27 87-112 (133)
4 4dh4_A MIF; trimer, isomerase; 23.9 37 0.0013 21.9 1.7 25 3-27 67-91 (114)
5 3t5s_A Gilaa.00834.A, macropha 21.3 54 0.0018 22.4 2.2 26 2-27 87-112 (135)
6 2b7e_A PRE-mRNA processing pro 18.7 59 0.002 20.7 1.8 14 9-22 2-15 (59)
7 3fwt_A Macrophage migration in 18.4 54 0.0018 22.3 1.7 25 3-27 88-112 (133)
8 3kan_A D-dopachrome tautomeras 17.9 77 0.0026 20.8 2.3 26 2-27 65-91 (117)
9 4fla_A Regulation of nuclear P 17.5 2.9E+02 0.0098 19.8 6.8 48 14-61 85-135 (152)
10 2wb7_A PT26-6P; extra chromoso 17.4 3.6E+02 0.012 23.7 6.9 62 11-72 409-477 (526)
No 1
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=30.16 E-value=17 Score=21.18 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=13.7
Q ss_pred CCCccccHHHHHhHHH
Q 036708 3 KHDPEVSEDTEKNFAE 18 (114)
Q Consensus 3 khdPev~eemeK~f~~ 18 (114)
.-||+++.-|.|+|++
T Consensus 18 ~gddd~kram~KS~~e 33 (35)
T 2jtt_C 18 DGDDDMKRTINKAWVE 33 (35)
T ss_dssp TCCSSHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhh
Confidence 4589999999999975
No 2
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=28.64 E-value=27 Score=22.76 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCCCccccHHHHHhHHHHHHHHHHhH
Q 036708 2 AKHDPEVSEDTEKNFAELLTEELKLR 27 (114)
Q Consensus 2 ~khdPev~eemeK~f~~LL~EELkLq 27 (114)
|..+|+.++.+-+.+.++|.++|+..
T Consensus 65 g~~~~~~n~~~s~~i~~~l~~~Lgi~ 90 (114)
T 3djh_A 65 GKIGGAQNRSYSKLLCGLLAERLRIS 90 (114)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34577888899999999999998753
No 3
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=24.66 E-value=44 Score=22.81 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.7
Q ss_pred CCCCccccHHHHHhHHHHHHHHHHhH
Q 036708 2 AKHDPEVSEDTEKNFAELLTEELKLR 27 (114)
Q Consensus 2 ~khdPev~eemeK~f~~LL~EELkLq 27 (114)
|.-+|+.++.+-+.+.++|.++|++.
T Consensus 87 g~~~~e~n~~~s~~i~~~l~~~LgI~ 112 (133)
T 3fwu_A 87 GGYGPSEPEKVTSIVTAAITKECGIV 112 (133)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34678888999999999999999764
No 4
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=23.88 E-value=37 Score=21.94 Aligned_cols=25 Identities=4% Similarity=-0.007 Sum_probs=20.2
Q ss_pred CCCccccHHHHHhHHHHHHHHHHhH
Q 036708 3 KHDPEVSEDTEKNFAELLTEELKLR 27 (114)
Q Consensus 3 khdPev~eemeK~f~~LL~EELkLq 27 (114)
.-.|+.+..+-+.++++|.++|+..
T Consensus 67 ~~~~e~~~~l~~~i~~~l~~~Lgi~ 91 (114)
T 4dh4_A 67 GITSSTNCKIAAALSAACERHLGVP 91 (114)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 4567788889999999999998753
No 5
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=21.25 E-value=54 Score=22.44 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=18.4
Q ss_pred CCCCccccHHHHHhHHHHHHHHHHhH
Q 036708 2 AKHDPEVSEDTEKNFAELLTEELKLR 27 (114)
Q Consensus 2 ~khdPev~eemeK~f~~LL~EELkLq 27 (114)
|.-+|+.+..+-+.+.++|.++|++.
T Consensus 87 g~~t~e~n~~~s~~i~~~l~~~Lgi~ 112 (135)
T 3t5s_A 87 GVISQAKNPSISAAITGCLTQHFKVK 112 (135)
T ss_dssp C-----CCHHHHHHHHHHHHHHHCCC
T ss_pred EEEeccCCchHHHHHHHHHHHhcccC
Confidence 34578889999999999999999764
No 6
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=18.70 E-value=59 Score=20.66 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.9
Q ss_pred cHHHHHhHHHHHHH
Q 036708 9 SEDTEKNFAELLTE 22 (114)
Q Consensus 9 ~eemeK~f~~LL~E 22 (114)
.+|.++.|..||.+
T Consensus 2 ~eEae~aF~~lL~~ 15 (59)
T 2b7e_A 2 AMEAEKEFITMLKE 15 (59)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 47889999999976
No 7
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=18.38 E-value=54 Score=22.32 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=20.5
Q ss_pred CCCccccHHHHHhHHHHHHHHHHhH
Q 036708 3 KHDPEVSEDTEKNFAELLTEELKLR 27 (114)
Q Consensus 3 khdPev~eemeK~f~~LL~EELkLq 27 (114)
+-.|+.++.+-+.+.++|.++|++.
T Consensus 88 ~~~~e~n~~~s~~i~~~l~~~LgI~ 112 (133)
T 3fwt_A 88 EYAPSKPKMMTPRIAAAITKECGIP 112 (133)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 4577888889999999999998764
No 8
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=17.91 E-value=77 Score=20.84 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=20.2
Q ss_pred CCCCc-cccHHHHHhHHHHHHHHHHhH
Q 036708 2 AKHDP-EVSEDTEKNFAELLTEELKLR 27 (114)
Q Consensus 2 ~khdP-ev~eemeK~f~~LL~EELkLq 27 (114)
|+.+| +.++.+-+.+.++|.++|+..
T Consensus 65 G~~~~~~~n~~~s~~i~~~l~~~Lgi~ 91 (117)
T 3kan_A 65 GVVGTAEDNRSHSAHFFEFLTKELALG 91 (117)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhCcC
Confidence 34455 678889999999999998753
No 9
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=17.53 E-value=2.9e+02 Score=19.83 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 036708 14 KNFAELLTEELKLREAEAL---ENQQRADMALLEAKKLTSQYQKEADKCNS 61 (114)
Q Consensus 14 K~f~~LL~EELkLqe~~A~---e~~~~ad~~lleAKk~aSQYQKEAdKCn~ 61 (114)
..|...|..|++-|..... +-...-...+.+++++...|+.=.++.++
T Consensus 85 ~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~ 135 (152)
T 4fla_A 85 AEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQ 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888876642 22233345777888888888877776654
No 10
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=17.40 E-value=3.6e+02 Score=23.72 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=44.1
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhch--hhhHHHHHHH
Q 036708 11 DTEKNFAELLTEELKLREAEALENQQRA-----DMALLEAKKLTSQYQKEADKCNSG--METCEEAREK 72 (114)
Q Consensus 11 emeK~f~~LL~EELkLqe~~A~e~~~~a-----d~~lleAKk~aSQYQKEAdKCn~g--meTCEeAREk 72 (114)
+.=|++++.+...|+-...+|+.-+..+ .-+..-|++..+.||+..+-=..- ++.-++.+.-
T Consensus 409 ~~ik~i~~s~i~sL~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~ 477 (526)
T 2wb7_A 409 EKINATTKAMINSLQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQMFLNY 477 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHH
Confidence 3457888999999999999998888887 357778899999999876543332 2334444433
Done!