BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036711
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 122 bits (306), Expect = 5e-29, Method: Composition-based stats.
Identities = 56/108 (51%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Query: 1 HRYYGKSIPFGSREEALKNASTLGYFNSAQAVTDYAEILLYIKEKF-NARHSPVIVIGGS 59
HRYYG+S+PFG + + K++ L + S QA+ D+AE++ ++K A + PVI IGGS
Sbjct: 77 HRYYGESLPFG--DNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGS 134
Query: 60 YGGMLATWFRLKYPHVALGALASSAPILYFDDITPQNGYYSIVTRDFR 107
YGGMLA WFR+KYPH+ +GALA+SAPI F+D+ P + IVT DFR
Sbjct: 135 YGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFR 182
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 97.4 bits (241), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 1 HRYYGKSIPFGSREEALKNASTLGYFNSAQAVTDYAEILLYIKEKFNARHSPVIVIGGSY 60
HRYYGKS+PFG++ + L QA+ D+AE+L ++ A+ +P I GGSY
Sbjct: 84 HRYYGKSLPFGAQSTQRGHTELL---TVEQALADFAELLRALRRDLGAQDAPAIAFGGSY 140
Query: 61 GGMLATWFRLKYPHVALGALASSAPILYFDDITPQNGYYSIVTRDF 106
GGML+ + R+KYPH+ GALA+SAP+L + N ++ VT DF
Sbjct: 141 GGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADF 186
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 93.2 bits (230), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 1 HRYYGKSIPFGSREEALKNASTLGYFNSAQAVTDYAEILLYIKEKFNARHSPVIVIGGSY 60
HRYYGKS+PFG++ + L QA+ D+AE+L ++ A+ +P I GGSY
Sbjct: 81 HRYYGKSLPFGAQSTQRGHTELL---TVEQALADFAELLRALRRDLGAQDAPAIAFGGSY 137
Query: 61 GGMLATWFRLKYPHVALGALASSAPILYFDDITPQNGYYSIVTRDF 106
GG L+ + R KYPH+ GALA+SAP+L + N ++ VT DF
Sbjct: 138 GGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADF 183
>pdb|3MGA|A Chain A, 2.4 Angstrom Crystal Structure Of Ferric Enterobactin
Esterase (Fes) From Salmonella Typhimurium
pdb|3MGA|B Chain B, 2.4 Angstrom Crystal Structure Of Ferric Enterobactin
Esterase (Fes) From Salmonella Typhimurium
Length = 407
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 54 IVIGGSYGGMLATWFRLKYPHVALGALASSAPILYFDDITPQNGYYSIVTR 104
+V G S+GG+ A + L +P L+ S + ITP G ++TR
Sbjct: 284 VVAGQSFGGLSALYAGLNWPTRFGCVLSQSGSFWWPHRITPPEG--EVITR 332
>pdb|2GSX|A Chain A, Complement Receptor Type 2
Length = 951
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 6 KSIPFGSREEALKNASTLGYFNSAQA--VTDYAEILLYIKE----KFNARHSPVIVIGGS 59
+ +P GSR E + + GY + A + AE ++ K+ K H P +++ G
Sbjct: 650 QELPAGSRVELVNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPPVIVNGK 709
Query: 60 YGGMLATWF 68
+ GM+A F
Sbjct: 710 HTGMMAENF 718
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 RQGPTVQIGGNIGRMVLDIFRLK 169
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 RQGPTVQIGGNIGRMVLDIFRLK 169
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 RQGPTVQIGGNIGRMVLDIFRLK 169
>pdb|2FX5|A Chain A, Pseudomonas Mendocina Lipase
Length = 258
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 25 YFNSAQAVTDYAEILLYIKEKFNARHSPVIVIGGSYGGMLATWFRLK 71
Y N AQ V A + ++ E+ H + GG+Y G WFR +
Sbjct: 182 YLN-AQPVYRRANVPVFWGERRYVSHFEPVGSGGAYRGPSTAWFRFQ 227
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 131 REGPTVQIGGNIGRMVLDIFRLK 153
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 131 REGPTVQIGGNIGRMVLDIFRLK 153
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 132 REGPTVQIGGNIGRMVLDIFRLK 154
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 49 RHSPVIVIGGSYGGMLATWFRLK 71
R P + IGG+ G M+ FRLK
Sbjct: 147 REGPTVQIGGNIGRMVLDIFRLK 169
>pdb|2B61|A Chain A, Crystal Structure Of Homoserine Transacetylase
Length = 377
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 32 VTDYAEILLYIKEKFNARHSPVIVIGGSYGGMLATWFRLKYP 73
V D ++ + E H I IGGS+GG A + + YP
Sbjct: 136 VQDIVKVQKALLEHLGISHLKAI-IGGSFGGXQANQWAIDYP 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,493,401
Number of Sequences: 62578
Number of extensions: 129104
Number of successful extensions: 366
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 37
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)