BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036712
(1020 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 96/153 (62%), Gaps = 2/153 (1%)
Query: 868 RLYHLQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKE 927
R HL++T K V +S IHG GLF +R+I GEMV+EY G + D REK Y +
Sbjct: 42 RFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSK 101
Query: 928 GKDCYLFKISEEVVIDATNKGNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAG 987
G CY+F+I + V+DAT GN AR INHSC PNCY+R++++ D + IV+ A + G
Sbjct: 102 GIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINI-DGQKHIVIFAMRKIYRG 160
Query: 988 DELTYDYLFDPDEHDELKVPCLCKAPNCRMFMN 1020
+ELTYDY F P E K+PC C A CR F+N
Sbjct: 161 EELTYDYKF-PIEDASNKLPCNCGAKKCRKFLN 192
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Query: 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEG-KDCYLFKISEEVVIDATNK 947
GWGL + I++GE V EY GE + + R + ++ + Y+ + ++ +IDA K
Sbjct: 103 GWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPK 162
Query: 948 GNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDEHDELKVP 1007
GN AR +NH C PNC + SV ++R+ L A +++ AG ELT++Y + + K
Sbjct: 163 GNYARFMNHCCQPNCETQKWSVNG-DTRVGLFALSDIKAGTELTFNYNLECLGNG--KTV 219
Query: 1008 CLCKAPNCRMFM 1019
C C APNC F+
Sbjct: 220 CKCGAPNCSGFL 231
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQY-RKEGKDCYLFKISEEVVIDATNK 947
GWGL A + + V+EY GE + R K+Y R + Y + + +IDAT K
Sbjct: 128 GWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQK 187
Query: 948 GNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDEHDELKVP 1007
GN +R +NHSC PNC + +V + R+ V +G ELT+DY F + K
Sbjct: 188 GNCSRFMNHSCEPNCETQKWTVNG-QLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQK-- 244
Query: 1008 CLCKAPNCRMFM 1019
C C + NCR ++
Sbjct: 245 CFCGSANCRGYL 256
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation
3-9 Homolog 2
Length = 300
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 20/168 (11%)
Query: 872 LQRTEKHRVC-FGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKD 930
+Q+ ++ +C F S GWG+ I+ V+EY GE +T A+ R + Y +G
Sbjct: 134 VQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGI- 192
Query: 931 CYLFKI---SEEVVIDATNKGNIARLINHSCMPNCYARIMSVGDCES---RIVLIAKTNV 984
YLF + S+E +DA GN++ +NHSC PN + + + ++ RI L + +
Sbjct: 193 TYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTI 252
Query: 985 SAGDELTYDYLF--------DPDEHD----ELKVPCLCKAPNCRMFMN 1020
+AG+ELT+DY D +H ++ C C A CR ++N
Sbjct: 253 NAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYLN 300
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYLFKISEEVVIDATNKG 948
GWG+ + ++ G+ ++EY GE V++ R + D Y + +VID+ G
Sbjct: 85 GWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHYCLNLDSGMVIDSYRMG 144
Query: 949 NIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDEHDELKVPC 1008
N AR INHSC PNC + SV RI L A ++ AG ELTYDY F ++ ++ C
Sbjct: 145 NEARFINHSCDPNCEMQKWSVNGV-YRIGLYALKDMPAGTELTYDYNFHSFNVEKQQL-C 202
Query: 1009 LCKAPNCRMFM 1019
C CR +
Sbjct: 203 KCGFEKCRGII 213
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 870 YHLQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGK 929
+H Q + H+ GWGL I +G V EY GE + S R K
Sbjct: 126 FHFQVFKTHK--------KGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSDS 177
Query: 930 DCYLFKISE--------EVVIDATNKGNIARLINHSCMPNCYARIMSVGDCESRIVLIAK 981
+ Y+ I E E +D T GNI R +NHSC PN + + ++ L A
Sbjct: 178 N-YIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAA 236
Query: 982 TNVSAGDELTYDYLF-----------DPDEHDELKVPCLCKAPNCRMFM 1019
++ +EL+YDY + +H +L+ PC C A +C F+
Sbjct: 237 KDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFL 285
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKE-GKDCYLF---KISEEVVIDA 944
G G+ A + G+ VVEY G+ + + A RE Y ++ CY++ +S+ +DA
Sbjct: 40 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDA 99
Query: 945 TNKGN-IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDY 994
T + N + RLINHS NC ++ + D ++LIA +++AG+EL YDY
Sbjct: 100 TRETNRLGRLINHSKSGNCQTKLHDI-DGVPHLILIASRDIAAGEELLYDY 149
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKE-GKDCYLF---KISEEVVIDA 944
G G+ A + G+ VVEY G+ + + A RE Y ++ CY++ +S+ +DA
Sbjct: 42 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDA 101
Query: 945 TNKGN-IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDY 994
T + N + RLINHS NC ++ + D ++LIA +++AG+EL YDY
Sbjct: 102 TRETNRLGRLINHSKCGNCQTKLHDI-DGVPHLILIASRDIAAGEELLYDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKE-GKDCYLF---KISEEVVIDA 944
G G+ A + G+ VVEY G+ + + A RE Y ++ CY++ +S+ +DA
Sbjct: 36 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDA 95
Query: 945 TNKGN-IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDY 994
T + N + RLINHS NC ++ + D ++LIA +++AG+EL YDY
Sbjct: 96 TRETNRLGRLINHSKCGNCQTKLHDI-DGVPHLILIASRDIAAGEELLYDY 145
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
Length = 299
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 884 KSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGK----DCYLFKISEE 939
K+ GWG+ + R G + Y GE +T + A R+K Y +G D +F + E
Sbjct: 143 KTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASE 202
Query: 940 VVIDATNKGNIARLINHSCMPN--CYARIMSVG-DCESRIVLIAKTNVSAGDELTYDYL- 995
+DA N G+++R NHSC PN Y+ + + G + A ++ +ELT+DY
Sbjct: 203 YTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAG 262
Query: 996 ---FDP--------DEHDELKVPCLCKAPNCRMFM 1019
F P + +L+ C C + NCR ++
Sbjct: 263 AKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWL 297
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
Length = 287
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 872 LQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDC 931
+Q + R+ ++ GWG+ + + I G V EY GE ++ S AD+RE +D
Sbjct: 141 VQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVRE-------EDS 193
Query: 932 YLFKI----SEEVVIDATNKGNIARLINHSCMPNCY-ARI-MSVGDCE-SRIVLIAKTNV 984
YLF + E IDA GN++R INH C PN R+ M+ D RI + +
Sbjct: 194 YLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLI 253
Query: 985 SAGDELTYDYLFDPDEHDELKVPCLCKAPNCR 1016
AG++L +DY + C C +P CR
Sbjct: 254 EAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 285
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 872 LQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDC 931
+Q + R+ ++ GWG+ + + I G V EY GE ++ S AD+RE +D
Sbjct: 139 VQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVRE-------EDS 191
Query: 932 YLFKIS----EEVVIDATNKGNIARLINHSCMPNCY-ARI-MSVGDCE-SRIVLIAKTNV 984
YLF + E IDA GN++R INH C PN R+ M+ D RI + +
Sbjct: 192 YLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLI 251
Query: 985 SAGDELTYDYLFDPDEHDELKVPCLCKAPNCR 1016
AG++L +DY + C C +P CR
Sbjct: 252 EAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 283
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
Length = 261
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 872 LQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDC 931
+Q + R+ ++ GWG+ + + I G V EY GE ++ S AD+RE +D
Sbjct: 115 VQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVRE-------EDS 167
Query: 932 YLFKI----SEEVVIDATNKGNIARLINHSCMPNCY-ARI-MSVGDCE-SRIVLIAKTNV 984
YLF + E IDA GN++R INH C PN R+ M+ D RI + +
Sbjct: 168 YLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLI 227
Query: 985 SAGDELTYDYLFDPDEHDELKVPCLCKAPNCR 1016
AG++L +DY + C C +P CR
Sbjct: 228 EAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 259
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 25/161 (15%)
Query: 850 LNTYKEVDKPEIFS---------SFKERLYHLQRTEKHRVCFGKSGIHGWGLFARRHIQE 900
L + +++ P IF + K R+ +Q K R+ ++ GWG+ A + I +
Sbjct: 93 LQEFNKIEPPLIFECNQACSCWRNCKNRV--VQSGIKVRLQLYRTAKMGWGVRALQTIPQ 150
Query: 901 GEMVVEYRGEQVTQSIADLREKQYRKEGKDCYLFKIS----EEVVIDATNKGNIARLINH 956
G + EY GE ++ + AD+RE D YLF + E IDA GNI+R INH
Sbjct: 151 GTFICEYVGELISDAEADVRE-------DDSYLFDLDNKDGEVYCIDARYYGNISRFINH 203
Query: 957 SCMPNCY-ARI-MSVGDCE-SRIVLIAKTNVSAGDELTYDY 994
C PN R+ M D RI + ++ G+EL +DY
Sbjct: 204 LCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDY 244
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKE-GKDCYLFK---ISEEVVIDA 944
G G+ A + G+ VVE+ G+ + + A RE Y ++ CY++ +S+ +DA
Sbjct: 41 GRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDA 100
Query: 945 TNKGN-IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDY 994
T + N + RLINHS NC ++ + D ++LIA +++AG+EL YDY
Sbjct: 101 TRETNRLGRLINHSKCGNCQTKLHDI-DGVPHLILIASRDIAAGEELLYDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKE-GKDCYLF---KISEEVVIDA 944
G G+ A + G+ VVEY G+ + + A RE Y ++ CY++ +S+ +DA
Sbjct: 41 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDA 100
Query: 945 TNKGN-IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDY 994
T + N + RLINHS NC ++ + D ++LIA +++AG+EL +DY
Sbjct: 101 TRETNRLGRLINHSKCGNCQTKLHDI-DGVPHLILIASRDIAAGEELLFDY 150
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 25/161 (15%)
Query: 850 LNTYKEVDKPEIFS---------SFKERLYHLQRTEKHRVCFGKSGIHGWGLFARRHIQE 900
L + +++ P IF + K R+ +Q K R+ ++ GWG+ A + I +
Sbjct: 91 LQEFNKIEPPLIFECNQACSCWRNCKNRV--VQSGIKVRLQLYRTAKMGWGVRALQTIPQ 148
Query: 901 GEMVVEYRGEQVTQSIADLREKQYRKEGKDCYLFKIS----EEVVIDATNKGNIARLINH 956
G + EY GE ++ + AD+RE D YLF + E IDA GNI+R INH
Sbjct: 149 GTFICEYVGELISDAEADVRE-------DDSYLFDLDNKDGEVYCIDARYYGNISRFINH 201
Query: 957 SCMPNCY-ARI-MSVGDCE-SRIVLIAKTNVSAGDELTYDY 994
C PN R+ M D RI + ++ G+EL +DY
Sbjct: 202 LCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDY 242
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYR-KEGKDCYLFKIS---------- 937
GWG+ +I+ G+ V Y GE +T AD R + KD YLF +
Sbjct: 144 GWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDP 203
Query: 938 ----EEVVIDATNKGNIARLINHSCMPNCYARIMSVGDCESR----IVLIAKTNVSAGDE 989
+ + +D R INHSC PN A VGD + + L A ++ G E
Sbjct: 204 LLAGQPLEVDGEYMSGPTRFINHSCDPN-MAIFARVGDHADKHIHDLALFAIKDIPKGTE 262
Query: 990 LTYDYL-----FDPDEHDELKVP----CLCKAPNCRMFM 1019
LT+DY+ + D HD K+ CLC CR ++
Sbjct: 263 LTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYL 301
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 872 LQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDC 931
+Q + R+ ++ GWG+ + + I G V EY GE ++ S AD+RE +D
Sbjct: 140 VQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVRE-------EDS 192
Query: 932 YLFKI----SEEVVIDATNKGNIARLINHSCMPNCY-ARI-MSVGDCE-SRIVLIAKTNV 984
YLF + E IDA GN++R INH C PN R+ M+ D RI + +
Sbjct: 193 YLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLI 252
Query: 985 SAGDELTYDYLFDPDEHDELKVPCLCKAPNCR 1016
AG++L +D + C C +P CR
Sbjct: 253 EAGEQLGFDAGERFWDIKGKLFSCRCGSPKCR 284
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 595 CAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCRAC 640
C+IC E + N I+ C+ C +AVHQECYGV + + W+CR C
Sbjct: 28 CSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPE-GQWLCRHC 72
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 595 CAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCRAC 640
C+IC E + N I+ C+ C +AVHQECYGV + + W+CR C
Sbjct: 19 CSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPE-GQWLCRHC 63
>pdb|2X35|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4W|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|C Chain C, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|E Chain E, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|G Chain G, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|C Chain C, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|E Chain E, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|G Chain G, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|I Chain I, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|K Chain K, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|M Chain M, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|O Chain O, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1
Length = 132
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 29/116 (25%)
Query: 226 DLVWAKCGRSYPAWPAVVIDP--------------------ILQAPEAVLRCCIPGCLCV 265
DLVWAKC R YP++PA++IDP +L+ E + + V
Sbjct: 14 DLVWAKC-RGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLV 72
Query: 266 MFFGYSKNGTQRDYGWVKQGMLFPFA--EFMDKCEPTQLHKSKI-SGFQIALEEAV 318
+FF +R + W+ + L P + +DK + + KS I QIA A+
Sbjct: 73 LFF-----DNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRAL 123
>pdb|3L42|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger Containing
Protein 1
pdb|3MO8|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 1 In Complex With Trimethylated H3k36 Peptide
Length = 130
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 29/116 (25%)
Query: 226 DLVWAKCGRSYPAWPAVVIDP--------------------ILQAPEAVLRCCIPGCLCV 265
DLVWAKC R YP++PA++IDP +L+ E + + V
Sbjct: 10 DLVWAKC-RGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLV 68
Query: 266 MFFGYSKNGTQRDYGWVKQGMLFPFA--EFMDKCEPTQLHKSKI-SGFQIALEEAV 318
+FF +R + W+ + L P + +DK + + KS I QIA A+
Sbjct: 69 LFF-----DNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRAL 119
>pdb|3PFS|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 3
pdb|3PFS|B Chain B, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 3
Length = 158
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 21/113 (18%)
Query: 226 DLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIP---GCLCVMFFGYSKNG-------- 274
+LVWAKC R YP++PA++IDP + E +L +P L V+ G K
Sbjct: 41 ELVWAKC-RGYPSYPALIIDPKMPR-EGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFL 98
Query: 275 -----TQRDYGWVKQGMLFPFA--EFMDKCEPTQLHKSKI-SGFQIALEEAVL 319
+R + W+ + + P + +DK + + K+ I Q+A + A++
Sbjct: 99 VLFFDNKRTWQWLPRDKVLPLGVEDTVDKLKMLEGRKTSIRKSVQVAYDRAMI 151
>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger
Length = 87
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 688 LRIPTNLFLKSCIICKQTH-GSCTQCCK--CATYFHAMCASRAGYCMEIHSL-ERYGKQI 743
+ IP + +C +CKQ G+ QC K C T FH CA +AG M++ + E G
Sbjct: 9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGT 68
Query: 744 T---RKLIYCAVHRTPN 757
T RK YC VH P
Sbjct: 69 TFSVRKTAYCDVHTPPG 85
>pdb|2DAQ|A Chain A, Solution Structure Of Second Pwwp Domain Of Whsc1l1
Protein
Length = 110
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 227 LVWAKCGRSYPAWPAVVIDPI-----LQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGW 281
+VW K G +Y WPA + +P +Q + L G V FFG DY W
Sbjct: 14 IVWVKLG-NYRWWPAEICNPRSVPLNIQGLKHDL-----GDFPVFFFG------SHDYYW 61
Query: 282 VKQGMLFPFAEFMDKCEPTQLHKSKISGFQIALEEA 317
V QG +FP+ E Q +K F+ ALEEA
Sbjct: 62 VHQGRVFPYVEGDKSFAEGQTSINKT--FKKALEEA 95
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 930 DCYLFKISEEVVIDATNKG---NIARLINHSCMPNC--------YARIMSVGDCESRIVL 978
+C F +S++ + A G N+ L+NH C PNC + + S+ + RI L
Sbjct: 178 NCNGFTLSDQRGLQAVGVGIFPNLG-LVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIEL 236
Query: 979 IAKTNVSAGDELTYDYL 995
A +S G+ELT Y+
Sbjct: 237 RALGKISEGEELTVSYI 253
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 424 VCCDGCNVWVHAECDEISGKHFKDLEHI--DYYCPNCRV 460
+CCD C W H +C IS + LE DY CPNC +
Sbjct: 31 ICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 419 DSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCR 459
D G +CCD C+VW H +C I +H D Y C C+
Sbjct: 38 DDGYMICCDKCSVWQHIDCMGIDRQHIPDT----YLCERCQ 74
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 423 WVCCDGCNVWVHAECDEISGKHFKDLEHI-DYYCPNCRVK 461
W+CCD C +W H +C +I+ EHI Y CP+C K
Sbjct: 22 WICCDLCEMWFHGKCVKITPAR---AEHIKQYKCPSCSNK 58
>pdb|3LYI|A Chain A, Pwwp Domain Of Human Bromodomain-Containing Protein 1
pdb|3LYI|B Chain B, Pwwp Domain Of Human Bromodomain-Containing Protein 1
Length = 126
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 227 LVWAKCGRSYPAWPAVVIDP 246
+VWAKC YP++PA++IDP
Sbjct: 9 VVWAKCS-GYPSYPALIIDP 27
>pdb|2GFU|A Chain A, Nmr Solution Structure Of The Pwwp Domain Of Mismatch
Repair Protein Hmsh6
Length = 134
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 221 DFALGDLVWAKCGRSYPAWPAVV 243
DF+ GDLVWAK YP WP++V
Sbjct: 22 DFSPGDLVWAKM-EGYPWWPSLV 43
>pdb|1KHC|A Chain A, Crystal Structure Of The Pwwp Domain Of Mammalian Dna
Methyltransferase Dnmt3b
Length = 147
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 220 EDFALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSK 272
++F +GDLVW K + + WPA+V+ + R +PG V +FG K
Sbjct: 10 KEFGIGDLVWGKI-KGFSWWPAMVVSWKATSK----RQAMPGMRWVQWFGDGK 57
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 426 CDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRV 460
CD C W H C + H D++ Y+CPNC V
Sbjct: 55 CDICKDWFHGSCVGVEEHHAVDIDL--YHCPNCAV 87
>pdb|3LQH|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo In The Free Form
pdb|3LQI|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|C Chain C, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQJ|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
pdb|3LQJ|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
Length = 183
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 426 CDGCNVWVHAECDEISGKHFKDL----EHIDYYCPNC 458
C C+ WVH++C+ +S + ++ L E + Y C NC
Sbjct: 24 CGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC 60
>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
Length = 897
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 33/97 (34%), Gaps = 27/97 (27%)
Query: 143 GFTMDKYRFGNSNYRGYNGFDPREYLVSRRPVMPAGNVNSLPMAGKKQFMPGFSSRNVER 202
G T + G NY G + P EYL+ + AG N P P S E+
Sbjct: 402 GNTFNNLSLGGQNYDGLSAVTPLEYLI-----VEAGMRNQTPQ-------PTLSVLYDEK 449
Query: 203 ITXXXXXXXXXXDVYKPEDFALGDLVWAKCGRSYPAW 239
PEDF + K G YPAW
Sbjct: 450 T---------------PEDFLMKAASCTKLGLGYPAW 471
>pdb|3PMI|A Chain A, Pwwp Domain Of Human Mutated Melanoma-Associated Antigen 1
pdb|3PMI|B Chain B, Pwwp Domain Of Human Mutated Melanoma-Associated Antigen 1
pdb|3PMI|C Chain C, Pwwp Domain Of Human Mutated Melanoma-Associated Antigen 1
pdb|3PMI|D Chain D, Pwwp Domain Of Human Mutated Melanoma-Associated Antigen 1
Length = 134
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 218 KPEDFALGDLVWAKCGRSYPAWPAVV 243
+P F +G LVW K + YP WPAVV
Sbjct: 1 EPRSFEVGXLVWHK-HKKYPFWPAVV 25
>pdb|3SZK|F Chain F, Crystal Structure Of Human Methaemoglobin Complexed With
The First Neat Domain Of Isdh From Staphylococcus Aureus
pdb|3SZK|C Chain C, Crystal Structure Of Human Methaemoglobin Complexed With
The First Neat Domain Of Isdh From Staphylococcus Aureus
pdb|3OVU|B Chain B, Crystal Structure Of Human Alpha-Haemoglobin Complexed
With Ahsp And The First Neat Domain Of Isdh From
Staphylococcus Aureus
pdb|3S48|A Chain A, Human Alpha-Haemoglobin Complexed With The First Neat
Domain Of Isdh From Staphylococcus Aureus
pdb|3S48|B Chain B, Human Alpha-Haemoglobin Complexed With The First Neat
Domain Of Isdh From Staphylococcus Aureus
Length = 164
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 910 EQVTQSIADLR-EKQYR-----KEGKDCYLFKISEEVVID-------------ATNKGNI 950
EQV + D E QY K+ D Y K EV +D N+
Sbjct: 45 EQVNFQLLDKNNETQYYHFFSIKDPADVYYTKKKAEVELDINTASTWKKFEVYENNQKLP 104
Query: 951 ARLINHSCMPNCYARI-MSVGDCESRIVLIAKTNVSAGDELTYDY 994
RL+++S +P +A I V D + +++ T + G+E YDY
Sbjct: 105 VRLVSYSPVPEDHAYIRFPVSDGTQELKIVSSTQIDDGEETNYDY 149
>pdb|2H3K|A Chain A, Solution Structure Of The First Neat Domain Of Isdh
Length = 144
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 910 EQVTQSIADLR-EKQYR-----KEGKDCYLFKISEEVVID-------------ATNKGNI 950
EQV + D E QY K+ D Y K EV +D N+
Sbjct: 25 EQVNFQLLDKNNETQYYHFFSIKDPADVYYTKKKAEVELDINTASTWKKFEVYENNQKLP 84
Query: 951 ARLINHSCMPNCYARI-MSVGDCESRIVLIAKTNVSAGDELTYDY 994
RL+++S +P +A I V D + +++ T + G+E YDY
Sbjct: 85 VRLVSYSPVPEDHAYIRFPVSDGTQELKIVSSTQIDDGEETNYDY 129
>pdb|1N3J|A Chain A, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|1N3J|B Chain B, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|2G46|A Chain A, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|B Chain B, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|3KMA|A Chain A, Crystal Structure Of Vset Under Condition A
pdb|3KMA|B Chain B, Crystal Structure Of Vset Under Condition A
pdb|3KMJ|A Chain A, Crystal Structure Of Vset Under Condition B
pdb|3KMT|A Chain A, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|B Chain B, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|C Chain C, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
Length = 119
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 879 RVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYLFKISE 938
RV KS + G+G+FAR+ ++GE+V E + +R + YLF
Sbjct: 5 RVIVKKSPLGGYGVFARKSFEKGELVEE--------CLCIVRHNDDWGTALEDYLFSRKN 56
Query: 939 EVVIDATNKGNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDY 994
+ A G + NHS PN ++ G RI I ++ G+E+T Y
Sbjct: 57 ---MSAMALG-FGAIFNHSKDPNARHE-LTAGLKRMRIFTIKP--IAIGEEITISY 105
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 426 CDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRV 460
CD C W H C + + D++ Y+CPNC V
Sbjct: 23 CDMCQDWFHGSCVGVEEEKAADIDL--YHCPNCEV 55
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 423 WVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNC 458
W+ CD C W H C + + F+ + ++CP C
Sbjct: 58 WIGCDSCQTWYHFLCSGL--EQFEYYLYEKFFCPKC 91
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 426 CDGCNVWVHAECDEISGKHFKDL----EHIDYYCPNC 458
C C+ WVH++C+ +S + ++ L E + Y C NC
Sbjct: 5 CGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC 41
>pdb|3FLG|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta
pdb|3QKJ|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|B Chain B, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|C Chain C, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|D Chain D, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
Length = 151
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 220 EDFALGDLVWAKCGRSYPAWPAVVI 244
++F +GDLVW K + + WPA+V+
Sbjct: 17 KEFGIGDLVWGKI-KGFSWWPAMVV 40
>pdb|3CBM|A Chain A, Set79-Er-Adomet Complex
pdb|3CBO|A Chain A, Set7/9-er-adohcy Complex
pdb|3CBP|A Chain A, Set7/9-er-sinefungin Complex
pdb|3OS5|A Chain A, Set79-Dnmt1 K142me1 Complex
Length = 256
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 876 EKHRVCFGKSGIH--GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYL 933
E RV +S I G GLF++ + ++ Y G ++T D R+
Sbjct: 102 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGN-----T 156
Query: 934 FKISEEVVIDATNKGN--------IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVS 985
+ EE VID N + NHS PNC + + V
Sbjct: 157 LSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVE 216
Query: 986 AGDELTYDYLFD 997
A +ELT Y +D
Sbjct: 217 ADEELTVAYGYD 228
>pdb|1XQH|A Chain A, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
pdb|1XQH|E Chain E, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
Length = 264
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 876 EKHRVCFGKSGIH--GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYL 933
E RV +S I G GLF++ + ++ Y G ++T D R+
Sbjct: 110 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGN-----T 164
Query: 934 FKISEEVVIDATNKGN--------IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVS 985
+ EE VID N + NHS PNC + + V
Sbjct: 165 LSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVE 224
Query: 986 AGDELTYDYLFD 997
A +ELT Y +D
Sbjct: 225 ADEELTVAYGYD 236
>pdb|4E47|A Chain A, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|B Chain B, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|C Chain C, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|D Chain D, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
Length = 264
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 876 EKHRVCFGKSGIH--GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYL 933
E RV +S I G GLF++ + ++ Y G ++T D R+
Sbjct: 104 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGN-----T 158
Query: 934 FKISEEVVIDATNKGN--------IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVS 985
+ EE VID N + NHS PNC + + V
Sbjct: 159 LSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVE 218
Query: 986 AGDELTYDYLFD 997
A +ELT Y +D
Sbjct: 219 ADEELTVAYGYD 230
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology Domain
In Complex With Actin
Length = 164
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 938 EEVVIDATNKGNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFD 997
E VV + G + +C + ++ + + + ++ +I K + GDELT D+L+D
Sbjct: 93 ESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYD 152
Query: 998 ---PDEH 1001
P +H
Sbjct: 153 EVHPKQH 159
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 953 LINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYL 995
L+NHSC PNC S+ ++L A ++ G+ELT YL
Sbjct: 239 LLNHSCDPNC-----SIVFNGPHLLLRAVRDIEVGEELTICYL 276
>pdb|1O9S|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
pdb|1O9S|B Chain B, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
Length = 259
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 876 EKHRVCFGKSGIH--GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYL 933
E RV +S I G GLF++ + ++ Y G ++T D R+
Sbjct: 105 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGN-----T 159
Query: 934 FKISEEVVIDATNKGN--------IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVS 985
+ EE VID N + NHS PNC + + V
Sbjct: 160 LSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVE 219
Query: 986 AGDELTYDYLFD 997
A +ELT Y +D
Sbjct: 220 ADEELTVAYGYD 231
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 953 LINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYL 995
L+NHSC PNC S+ ++L A ++ G+ELT YL
Sbjct: 205 LLNHSCDPNC-----SIVFNGPHLLLRAVRDIEVGEELTICYL 242
>pdb|2F69|A Chain A, Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF10
Peptide
pdb|3M53|A Chain A, Set79 IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
Length = 261
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 876 EKHRVCFGKSGIH--GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYL 933
E RV +S I G GLF++ + ++ Y G ++T D R+
Sbjct: 107 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGN-----T 161
Query: 934 FKISEEVVIDATNKGN--------IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVS 985
+ EE VID N + NHS PNC + + V
Sbjct: 162 LSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVE 221
Query: 986 AGDELTYDYLFD 997
A +ELT Y +D
Sbjct: 222 ADEELTVAYGYD 233
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 953 LINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYL 995
L+NHSC PNC S+ ++L A ++ G+ELT YL
Sbjct: 204 LLNHSCDPNC-----SIVFNGPHLLLRAVRDIEVGEELTICYL 241
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 953 LINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYL 995
L+NHSC PNC S+ ++L A ++ G+ELT YL
Sbjct: 203 LLNHSCDPNC-----SIVFNGPHLLLRAVRDIEVGEELTICYL 240
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 953 LINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYL 995
L+NHSC PNC S+ ++L A ++ G+ELT YL
Sbjct: 204 LLNHSCDPNC-----SIVFNGPHLLLRAVRDIEVGEELTICYL 241
>pdb|3M54|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M55|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M56|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
Length = 261
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 876 EKHRVCFGKSGIH--GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYL 933
E RV +S I G GLF++ + ++ Y G ++T D R+
Sbjct: 107 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGN-----T 161
Query: 934 FKISEEVVIDATNKGN--------IARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVS 985
+ EE VID N + NHS PNC + + V
Sbjct: 162 LSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIFDMFVHPRFGPIKCIRTLRAVE 221
Query: 986 AGDELTYDYLFD 997
A +ELT Y +D
Sbjct: 222 ADEELTVAYGYD 233
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 953 LINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYL 995
L+NHSC PNC S+ ++L A ++ G+ELT YL
Sbjct: 203 LLNHSCDPNC-----SIVFNGPHLLLRAVRDIEVGEELTICYL 240
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 402 QKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAEC 437
QK+E C +C+ D G +CCDGC H C
Sbjct: 5 QKNEDECAVCR------DGGELICCDGCPRAFHLAC 34
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 876 EKHRVCFGKSGIH--GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYL 933
E RV +S I G GLF++ + ++ Y G ++T D R+
Sbjct: 161 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGN-----T 215
Query: 934 FKISEEVVIDATNKGN--------IARLINHSCMPNC 962
+ EE VID N + NHS PNC
Sbjct: 216 LSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNC 252
>pdb|2KYU|A Chain A, The Solution Structure Of The Phd3 Finger Of Mll
Length = 67
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 426 CDGCNVWVHAECDEISGKHFKDL----EHIDYYCPNC 458
C C+ WVH++C+ +S + ++ L E + Y C NC
Sbjct: 27 CGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC 63
>pdb|1N6C|A Chain A, Structure Of Set79
Length = 297
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 876 EKHRVCFGKSGIH--GWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYL 933
E RV +S I G GLF++ + ++ Y G ++T D R+
Sbjct: 143 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGN-----T 197
Query: 934 FKISEEVVIDATNKGN--------IARLINHSCMPNC 962
+ EE VID N + NHS PNC
Sbjct: 198 LSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNC 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,229,778
Number of Sequences: 62578
Number of extensions: 1362909
Number of successful extensions: 2530
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2443
Number of HSP's gapped (non-prelim): 120
length of query: 1020
length of database: 14,973,337
effective HSP length: 109
effective length of query: 911
effective length of database: 8,152,335
effective search space: 7426777185
effective search space used: 7426777185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)