Query 036712
Match_columns 1020
No_of_seqs 630 out of 2286
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1080 Histone H3 (Lys4) meth 100.0 1.8E-96 4E-101 897.2 40.8 916 2-1020 13-1005(1005)
2 KOG4442 Clathrin coat binding 100.0 4.6E-35 9.9E-40 338.9 14.6 171 846-1019 85-259 (729)
3 KOG0954 PHD finger protein [Ge 100.0 1.3E-31 2.8E-36 309.1 8.1 163 591-757 270-440 (893)
4 KOG0956 PHD finger protein AF1 100.0 7.7E-31 1.7E-35 300.2 4.6 159 593-757 6-184 (900)
5 KOG0955 PHD finger protein BR1 100.0 5.7E-30 1.2E-34 314.3 11.5 166 590-757 217-397 (1051)
6 COG5141 PHD zinc finger-contai 100.0 5.8E-31 1.2E-35 292.1 2.0 176 583-760 183-369 (669)
7 cd05838 WHSC1_related The PWWP 99.9 9.6E-26 2.1E-30 210.2 7.5 93 222-324 1-95 (95)
8 KOG1079 Transcriptional repres 99.9 7.8E-24 1.7E-28 244.6 9.6 134 866-1001 582-715 (739)
9 cd05836 N_Pac_NP60 The PWWP do 99.9 2.5E-23 5.4E-28 190.5 6.9 82 222-318 1-83 (86)
10 KOG0957 PHD finger protein [Ge 99.9 5E-24 1.1E-28 237.5 -1.0 160 593-756 120-301 (707)
11 smart00317 SET SET (Su(var)3-9 99.9 1.7E-21 3.6E-26 184.4 15.1 114 880-994 2-116 (116)
12 KOG1082 Histone H3 (Lys9) meth 99.9 2.8E-22 6E-27 229.3 8.7 155 865-1019 163-353 (364)
13 cd05834 HDGF_related The PWWP 99.9 3.5E-22 7.5E-27 181.7 7.4 80 221-318 2-81 (83)
14 cd05835 Dnmt3b_related The PWW 99.9 4.1E-22 8.8E-27 183.1 6.4 86 222-320 1-86 (87)
15 KOG1083 Putative transcription 99.8 2.1E-22 4.6E-27 239.8 3.0 135 867-1002 1166-1301(1306)
16 cd05162 PWWP The PWWP domain, 99.8 2.8E-21 6.1E-26 177.4 8.4 86 222-319 1-86 (87)
17 cd05840 SPBC215_ISWI_like The 99.8 4.5E-20 9.7E-25 171.3 7.1 86 222-318 1-91 (93)
18 PF13832 zf-HC5HC2H_2: PHD-zin 99.8 5.3E-20 1.2E-24 176.1 7.1 100 648-753 9-110 (110)
19 PF00855 PWWP: PWWP domain; I 99.8 1.6E-20 3.4E-25 171.4 2.7 86 222-320 1-86 (86)
20 KOG1085 Predicted methyltransf 99.8 1.5E-18 3.2E-23 183.8 11.3 126 872-998 250-380 (392)
21 cd05841 BS69_related The PWWP 99.7 1.8E-18 3.8E-23 156.3 7.1 75 222-318 7-81 (83)
22 smart00293 PWWP domain with co 99.7 3.2E-18 7E-23 148.0 6.4 62 222-291 1-63 (63)
23 cd05837 MSH6_like The PWWP dom 99.7 2.1E-17 4.5E-22 158.4 7.8 94 221-321 2-103 (110)
24 COG2940 Proteins containing SE 99.6 5.2E-17 1.1E-21 192.5 1.1 144 876-1020 330-480 (480)
25 cd06080 MUM1_like Mutated mela 99.6 2E-15 4.4E-20 135.8 5.1 75 222-317 1-76 (80)
26 KOG1141 Predicted histone meth 99.6 1.2E-15 2.7E-20 178.3 3.5 80 940-1019 1179-1261(1262)
27 cd05839 BR140_related The PWWP 99.5 8.7E-15 1.9E-19 139.2 7.0 66 222-293 1-81 (111)
28 KOG1904 Transcription coactiva 99.5 6.8E-15 1.5E-19 170.4 6.4 89 218-320 9-97 (496)
29 PF13771 zf-HC5HC2H: PHD-like 99.4 3.8E-14 8.3E-19 130.7 2.2 86 663-754 1-90 (90)
30 PF00856 SET: SET domain; Int 99.4 3.7E-13 8E-18 133.0 9.2 106 889-995 1-162 (162)
31 KOG2589 Histone tail methylase 98.8 7.1E-09 1.5E-13 114.4 5.4 121 886-1017 135-255 (453)
32 PF01342 SAND: SAND domain; I 98.7 4.3E-09 9.4E-14 95.8 -0.1 67 488-556 8-78 (82)
33 PF00628 PHD: PHD-finger; Int 98.6 1.3E-08 2.9E-13 84.1 1.5 51 407-461 1-51 (51)
34 smart00258 SAND SAND domain. 98.6 2.7E-08 5.9E-13 87.9 2.8 63 490-554 2-67 (73)
35 KOG1081 Transcription factor N 98.6 1.6E-08 3.5E-13 119.1 0.9 118 893-1020 319-437 (463)
36 PF13831 PHD_2: PHD-finger; PD 98.5 1.9E-08 4.1E-13 77.5 -0.2 35 607-641 2-36 (36)
37 KOG4443 Putative transcription 98.5 2.9E-08 6.2E-13 116.9 -0.5 92 361-460 109-201 (694)
38 smart00249 PHD PHD zinc finger 98.2 9E-07 1.9E-11 70.7 3.2 47 407-458 1-47 (47)
39 KOG1512 PHD Zn-finger protein 97.8 6.2E-06 1.3E-10 88.8 1.5 44 595-641 317-361 (381)
40 KOG4323 Polycomb-like PHD Zn-f 97.4 0.00014 3E-09 84.9 5.0 140 589-755 80-223 (464)
41 KOG1244 Predicted transcriptio 97.4 5.3E-05 1.2E-09 81.4 1.5 45 595-642 284-330 (336)
42 KOG2461 Transcription factor B 97.4 0.00012 2.6E-09 85.0 4.4 109 877-998 27-146 (396)
43 KOG4299 PHD Zn-finger protein 97.4 0.00019 4.2E-09 85.4 5.9 48 592-642 253-304 (613)
44 KOG1973 Chromatin remodeling p 97.2 0.00013 2.8E-09 81.3 2.0 39 418-461 227-268 (274)
45 smart00249 PHD PHD zinc finger 97.1 0.00045 9.8E-09 54.9 3.7 45 594-640 1-47 (47)
46 PF00628 PHD: PHD-finger; Int 97.1 0.00023 5E-09 58.8 1.6 45 594-641 1-49 (51)
47 COG5034 TNG2 Chromatin remodel 96.8 0.0008 1.7E-08 72.4 3.0 42 410-460 225-269 (271)
48 KOG1081 Transcription factor N 96.2 0.0021 4.5E-08 76.5 2.0 58 215-290 131-188 (463)
49 PF07227 DUF1423: Protein of u 96.1 0.0039 8.4E-08 72.5 3.1 61 391-461 122-192 (446)
50 smart00508 PostSET Cysteine-ri 96.0 0.0031 6.7E-08 45.2 1.3 16 1005-1020 2-17 (26)
51 KOG4323 Polycomb-like PHD Zn-f 95.9 0.0037 8.1E-08 73.2 2.1 53 591-643 167-224 (464)
52 KOG1084 Transcription factor T 95.5 0.0035 7.6E-08 72.8 -0.1 83 658-754 237-321 (375)
53 PF15446 zf-PHD-like: PHD/FYVE 95.0 0.022 4.8E-07 58.3 3.9 49 594-642 1-59 (175)
54 KOG0825 PHD Zn-finger protein 93.7 0.028 6E-07 68.4 1.5 50 592-644 215-267 (1134)
55 KOG4443 Putative transcription 93.4 0.036 7.7E-07 66.8 1.7 51 593-646 69-121 (694)
56 PF13639 zf-RING_2: Ring finge 93.1 0.016 3.5E-07 46.4 -1.2 43 407-459 2-44 (44)
57 KOG1973 Chromatin remodeling p 92.9 0.042 9.1E-07 61.5 1.3 38 605-643 228-268 (274)
58 PF13831 PHD_2: PHD-finger; PD 92.5 0.02 4.3E-07 44.5 -1.4 35 421-459 2-36 (36)
59 KOG0955 PHD finger protein BR1 92.1 0.14 3.1E-06 65.9 4.5 56 400-461 214-269 (1051)
60 KOG1141 Predicted histone meth 89.4 0.25 5.5E-06 60.8 3.0 56 867-922 788-843 (1262)
61 KOG1512 PHD Zn-finger protein 87.5 0.25 5.5E-06 54.2 1.3 82 364-460 276-362 (381)
62 PF13341 RAG2_PHD: RAG2 PHD do 87.3 0.28 6.1E-06 43.1 1.2 37 421-457 28-67 (78)
63 COG5034 TNG2 Chromatin remodel 85.3 0.49 1.1E-05 51.6 2.1 42 597-642 225-269 (271)
64 KOG1244 Predicted transcriptio 83.8 0.49 1.1E-05 51.9 1.3 51 591-641 223-282 (336)
65 KOG0383 Predicted helicase [Ge 83.6 0.63 1.4E-05 57.9 2.3 49 591-645 46-96 (696)
66 KOG0954 PHD finger protein [Ge 82.4 0.53 1.2E-05 57.7 0.9 51 404-460 270-320 (893)
67 KOG1632 Uncharacterized PHD Zn 81.4 0.19 4.1E-06 58.1 -3.2 64 394-460 229-294 (345)
68 KOG4299 PHD Zn-finger protein 81.4 0.63 1.4E-05 56.5 1.0 53 407-463 255-307 (613)
69 KOG1632 Uncharacterized PHD Zn 79.6 0.87 1.9E-05 52.7 1.4 49 410-462 64-114 (345)
70 PF14446 Prok-RING_1: Prokaryo 79.3 1.3 2.9E-05 37.6 2.0 32 592-624 5-36 (54)
71 KOG2084 Predicted histone tail 78.9 3.2 6.8E-05 49.1 5.9 41 953-998 208-249 (482)
72 PF11717 Tudor-knot: RNA bindi 77.3 1.8 3.9E-05 36.6 2.3 54 222-288 1-54 (55)
73 KOG0383 Predicted helicase [Ge 76.6 0.8 1.7E-05 57.0 -0.0 51 400-459 42-92 (696)
74 KOG0825 PHD Zn-finger protein 75.5 1.5 3.2E-05 54.2 1.8 47 408-460 218-265 (1134)
75 KOG1245 Chromatin remodeling c 75.3 0.68 1.5E-05 62.1 -1.1 51 407-463 1110-1160(1404)
76 PF15446 zf-PHD-like: PHD/FYVE 74.9 8.9 0.00019 39.9 6.9 36 408-443 2-37 (175)
77 PRK14890 putative Zn-ribbon RN 73.0 2.1 4.6E-05 36.9 1.6 29 366-401 6-34 (59)
78 COG5141 PHD zinc finger-contai 72.6 1.4 3E-05 51.9 0.6 35 420-459 207-241 (669)
79 PF07496 zf-CW: CW-type Zinc F 72.3 1.8 3.8E-05 36.1 1.0 33 422-457 2-34 (50)
80 smart00743 Agenet Tudor-like d 72.3 4.5 9.7E-05 34.5 3.5 38 221-269 2-39 (61)
81 KOG0957 PHD finger protein [Ge 71.7 2.5 5.5E-05 49.9 2.4 52 405-459 544-596 (707)
82 smart00333 TUDOR Tudor domain. 71.0 6.1 0.00013 33.0 4.0 53 221-291 2-54 (57)
83 cd04718 BAH_plant_2 BAH, or Br 69.3 3 6.6E-05 42.5 2.1 26 618-644 1-28 (148)
84 KOG1245 Chromatin remodeling c 68.4 1.4 3E-05 59.3 -0.6 49 593-644 1109-1159(1404)
85 KOG1044 Actin-binding LIM Zn-f 68.3 5.1 0.00011 48.4 3.9 76 648-729 145-224 (670)
86 KOG1473 Nucleosome remodeling 67.7 4.5 9.7E-05 52.2 3.5 116 586-727 338-460 (1414)
87 cd02342 ZZ_UBA_plant Zinc fing 66.8 4 8.7E-05 33.1 1.9 34 368-402 1-34 (43)
88 PF14446 Prok-RING_1: Prokaryo 65.8 4 8.6E-05 34.7 1.8 37 696-732 5-44 (54)
89 KOG2752 Uncharacterized conser 64.4 4.2 9E-05 45.9 2.1 37 404-441 127-167 (345)
90 PF00130 C1_1: Phorbol esters/ 64.3 6.6 0.00014 32.5 2.9 39 402-441 8-46 (53)
91 PF12678 zf-rbx1: RING-H2 zinc 63.8 2.5 5.3E-05 38.0 0.2 45 408-459 22-73 (73)
92 KOG1337 N-methyltransferase [G 63.7 5.1 0.00011 48.4 2.9 40 953-996 239-278 (472)
93 PF13901 DUF4206: Domain of un 63.5 6.4 0.00014 42.3 3.3 56 391-461 141-198 (202)
94 PF11793 FANCL_C: FANCL C-term 62.0 3.7 8.1E-05 36.6 1.0 57 406-462 3-65 (70)
95 PF11793 FANCL_C: FANCL C-term 61.9 6 0.00013 35.3 2.3 52 592-643 2-64 (70)
96 KOG1844 PHD Zn-finger proteins 61.8 4.1 8.9E-05 49.4 1.7 49 410-464 90-138 (508)
97 PRK14714 DNA polymerase II lar 58.3 6.5 0.00014 51.8 2.6 28 944-971 1240-1270(1337)
98 PF13717 zinc_ribbon_4: zinc-r 57.9 7.5 0.00016 30.2 1.9 28 407-434 4-36 (36)
99 smart00401 ZnF_GATA zinc finge 54.2 9.3 0.0002 32.2 2.1 36 367-405 3-38 (52)
100 PF14634 zf-RING_5: zinc-RING 53.0 6 0.00013 31.8 0.7 43 408-460 2-44 (44)
101 PF13719 zinc_ribbon_5: zinc-r 51.3 9.8 0.00021 29.7 1.6 28 407-434 4-36 (37)
102 KOG1829 Uncharacterized conser 50.5 3.6 7.8E-05 50.4 -1.3 57 394-464 503-562 (580)
103 PF07649 C1_3: C1-like domain; 50.5 5.6 0.00012 29.4 0.2 28 407-437 2-29 (30)
104 PF00320 GATA: GATA zinc finge 50.5 6.6 0.00014 30.5 0.5 32 370-404 1-32 (36)
105 PF12773 DZR: Double zinc ribb 50.1 15 0.00032 30.1 2.6 13 366-378 11-23 (50)
106 PRK14559 putative protein seri 48.0 13 0.00027 46.8 2.7 35 367-413 1-35 (645)
107 cd00202 ZnF_GATA Zinc finger D 47.5 13 0.00027 31.7 1.9 35 369-406 1-35 (54)
108 KOG2462 C2H2-type Zn-finger pr 46.9 8.3 0.00018 43.0 0.8 69 393-463 162-254 (279)
109 PF12773 DZR: Double zinc ribb 46.8 11 0.00023 31.0 1.3 45 370-429 1-49 (50)
110 PF12861 zf-Apc11: Anaphase-pr 46.6 9 0.00019 35.6 0.9 54 405-463 21-82 (85)
111 cd00162 RING RING-finger (Real 46.0 7.6 0.00016 29.8 0.3 43 408-461 2-44 (45)
112 PF07191 zinc-ribbons_6: zinc- 45.9 6.5 0.00014 35.2 -0.1 36 369-413 3-38 (70)
113 PF13901 DUF4206: Domain of un 45.4 15 0.00033 39.4 2.5 44 591-642 151-197 (202)
114 PF07649 C1_3: C1-like domain; 45.3 9.4 0.0002 28.2 0.7 28 594-623 2-29 (30)
115 cd04508 TUDOR Tudor domains ar 42.8 29 0.00063 27.8 3.3 48 225-289 1-48 (48)
116 KOG2462 C2H2-type Zn-finger pr 41.9 14 0.0003 41.3 1.6 89 366-463 129-226 (279)
117 cd00029 C1 Protein kinase C co 41.0 14 0.00031 29.7 1.2 36 404-440 10-45 (50)
118 PHA02929 N1R/p28-like protein; 39.7 15 0.00033 40.5 1.5 53 404-463 173-227 (238)
119 TIGR00622 ssl1 transcription f 39.0 22 0.00047 34.8 2.3 18 364-381 12-29 (112)
120 PF08169 RBB1NT: RBB1NT (NUC16 38.2 69 0.0015 30.6 5.3 82 224-323 8-91 (96)
121 PF00301 Rubredoxin: Rubredoxi 37.9 25 0.00054 29.2 2.1 40 407-461 3-43 (47)
122 smart00109 C1 Protein kinase C 37.7 13 0.00027 29.7 0.4 35 403-439 9-43 (49)
123 PF08666 SAF: SAF domain; Int 36.8 20 0.00043 30.4 1.5 15 977-991 3-17 (63)
124 PF03833 PolC_DP2: DNA polymer 35.5 12 0.00027 47.4 0.0 39 366-417 654-692 (900)
125 PF00130 C1_1: Phorbol esters/ 35.3 37 0.0008 28.0 2.8 36 592-627 11-46 (53)
126 PF03107 C1_2: C1 domain; Int 35.1 29 0.00063 25.8 1.9 27 698-724 2-30 (30)
127 COG1198 PriA Primosomal protei 34.9 24 0.00052 44.9 2.4 50 392-461 435-484 (730)
128 PF13832 zf-HC5HC2H_2: PHD-zin 34.6 18 0.00039 34.6 0.9 34 404-442 54-89 (110)
129 TIGR00595 priA primosomal prot 33.7 23 0.0005 43.3 1.9 50 364-413 210-261 (505)
130 PF03107 C1_2: C1 domain; Int 33.3 31 0.00067 25.6 1.8 27 594-623 2-29 (30)
131 KOG1701 Focal adhesion adaptor 32.5 34 0.00075 40.4 2.9 76 364-459 357-434 (468)
132 KOG3623 Homeobox transcription 32.3 18 0.00038 45.1 0.6 43 391-433 893-960 (1007)
133 PF13923 zf-C3HC4_2: Zinc fing 31.7 14 0.00031 28.7 -0.2 39 408-458 1-39 (39)
134 cd00029 C1 Protein kinase C co 30.5 26 0.00055 28.2 1.1 35 592-626 11-45 (50)
135 KOG2041 WD40 repeat protein [G 30.3 57 0.0012 40.9 4.3 72 568-643 1093-1165(1189)
136 PF14803 Nudix_N_2: Nudix N-te 30.1 29 0.00063 26.9 1.2 29 406-435 1-33 (34)
137 KOG0956 PHD finger protein AF1 29.2 28 0.0006 43.2 1.5 36 420-460 19-56 (900)
138 cd02344 ZZ_HERC2 Zinc finger, 28.6 40 0.00088 27.7 1.9 33 368-401 1-33 (45)
139 COG1198 PriA Primosomal protei 28.5 31 0.00067 43.9 1.8 50 364-413 432-483 (730)
140 PRK04023 DNA polymerase II lar 28.3 37 0.0008 44.2 2.4 35 365-412 624-658 (1121)
141 cd05493 Bromo_ALL-1 Bromodomai 26.8 3.1 6.6E-05 41.7 -5.8 76 420-496 11-89 (131)
142 PF02318 FYVE_2: FYVE-type zin 26.8 42 0.00091 32.9 2.0 51 590-642 52-102 (118)
143 COG5194 APC11 Component of SCF 26.3 16 0.00035 33.5 -0.8 30 697-726 21-65 (88)
144 KOG0320 Predicted E3 ubiquitin 26.2 56 0.0012 34.5 2.9 49 366-414 127-176 (187)
145 cd00730 rubredoxin Rubredoxin; 25.9 59 0.0013 27.3 2.4 17 444-461 27-43 (50)
146 PRK14873 primosome assembly pr 25.9 33 0.00071 43.4 1.4 49 364-413 380-430 (665)
147 cd02340 ZZ_NBR1_like Zinc fing 25.3 51 0.0011 26.7 1.9 31 368-400 1-31 (43)
148 COG5243 HRD1 HRD ubiquitin lig 24.9 55 0.0012 38.1 2.7 54 401-461 283-343 (491)
149 KOG3053 Uncharacterized conser 24.8 19 0.00041 39.8 -0.8 57 406-463 21-82 (293)
150 TIGR00595 priA primosomal prot 24.7 50 0.0011 40.5 2.6 50 391-460 212-261 (505)
151 KOG1941 Acetylcholine receptor 24.3 12 0.00026 43.4 -2.5 49 404-460 364-413 (518)
152 TIGR02098 MJ0042_CXXC MJ0042 f 23.9 65 0.0014 24.9 2.2 27 408-434 5-36 (38)
153 PF09297 zf-NADH-PPase: NADH p 23.6 51 0.0011 24.8 1.5 27 405-431 3-29 (32)
154 PF14569 zf-UDP: Zinc-binding 23.5 28 0.0006 31.9 0.1 55 404-464 8-63 (80)
155 PF03854 zf-P11: P-11 zinc fin 23.4 45 0.00098 27.8 1.3 24 391-414 20-44 (50)
156 PRK05580 primosome assembly pr 23.4 43 0.00092 42.6 1.7 50 364-413 378-429 (679)
157 PF07227 DUF1423: Protein of u 23.2 60 0.0013 38.8 2.8 49 594-642 130-191 (446)
158 COG1439 Predicted nucleic acid 22.9 30 0.00066 36.4 0.3 22 392-413 139-161 (177)
159 KOG4333 Nuclear DEAF-1 related 22.7 49 0.0011 39.4 1.9 66 483-548 81-150 (425)
160 COG2888 Predicted Zn-ribbon RN 22.6 52 0.0011 28.7 1.5 27 365-399 7-34 (61)
161 PF14205 Cys_rich_KTR: Cystein 22.5 63 0.0014 27.7 2.0 15 447-461 23-37 (55)
162 PF00569 ZZ: Zinc finger, ZZ t 22.4 57 0.0012 26.6 1.7 34 367-401 4-37 (46)
163 cd02339 ZZ_Mind_bomb Zinc fing 22.1 65 0.0014 26.4 2.0 32 368-400 1-32 (45)
164 PF13771 zf-HC5HC2H: PHD-like 21.9 56 0.0012 29.9 1.8 38 401-443 32-71 (90)
165 PF10367 Vps39_2: Vacuolar sor 20.9 58 0.0013 30.5 1.7 31 696-726 78-109 (109)
166 KOG4628 Predicted E3 ubiquitin 20.6 82 0.0018 36.7 3.1 44 593-642 230-275 (348)
167 COG0068 HypF Hydrogenase matur 20.4 67 0.0014 40.5 2.5 48 366-414 122-182 (750)
168 KOG1338 Uncharacterized conser 20.4 71 0.0015 37.6 2.5 45 949-1000 217-264 (466)
No 1
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.8e-96 Score=897.17 Aligned_cols=916 Identities=42% Similarity=0.689 Sum_probs=714.0
Q ss_pred CCccccccccccccchhhhhhccccCcccccC-------CCC-ccccCCcccccccccc-----cccccccccccccCCC
Q 036712 2 PNPQFCKIAESCEENEVADEYAYVANPKKRRR-------RGG-DDCHQSLMHVEVDDLS-----SGSSSFISEEATCWDP 68 (1020)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 68 (1020)
++|+||+++..-+. .++|++. +|- ++|.|+++++.++.+. .++.+||++.+
T Consensus 13 ~~~rrc~~~~e~~~-----------~~~k~~~~~~~~~~~~~~~~~~n~~~~~~~~~vp~~t~~~~~~sv~~~t~----- 76 (1005)
T KOG1080|consen 13 RNLRRCKIGTEIEY-----------GRKKGEIIVYKKLQRASVDQPCNSVPELLTSSVPSLTSKEESQSVCSDTS----- 76 (1005)
T ss_pred cchhhhccCCcccc-----------ccccceeEeecccccccccccccccccccccCCCCCCCCCcceeeeecCC-----
Confidence 57999999533322 3444444 333 8999999999887552 33333332210
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCcccCCCCcccccCCccCccccccCCCCCCCC-ccccccccccccCccccccccc
Q 036712 69 EFEPDLNNFNYKGRGTNRSSDRFRPPALKPSKGRTQILPSRYDDSVLVVGDTDSSFD-EEDDVDIIEVNGDFDKLGFTMD 147 (1020)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 147 (1020)
+.||+||++++||||+|+++..|+++.-.. +.+.-++++++.+.+++.....
T Consensus 77 ---------------------------~~~s~~~~~~~~s~~~~~~~~~~~~~~~~ke~~~~~~~~~~~~~~~k~~~s~~ 129 (1005)
T KOG1080|consen 77 ---------------------------KKSSRGRVRAVPSRFRDSNVGTWRSSTPSKEFETEGEILKVNSEFEEVKVSSG 129 (1005)
T ss_pred ---------------------------CccccCCcccccccccccccccCCcccccccccCcceeeecccccCCceeccC
Confidence 899999999999999999999999994442 2233335566666665432222
Q ss_pred ccccCCCccCCCCCCCCcccc---cccccccCCCCcCCCCcccccccCCcccccchhhhhHHHHhhhhcccccCCCCCCC
Q 036712 148 KYRFGNSNYRGYNGFDPREYL---VSRRPVMPAGNVNSLPMAGKKQFMPGFSSRNVERITKEKEKKKKRKDVYKPEDFAL 224 (1020)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (1020)
..-++ -+..++...+...|+ ++| . .+..+.... .- ..+....++... .+++++.|.+++|+.
T Consensus 130 ~~~~~-~~~~s~~~~~~~~~~ss~~~~-~--~~~~~s~~~---~~---~i~~~~~~p~~~-----~~~~~~~~~~~~~~~ 194 (1005)
T KOG1080|consen 130 SSKLH-PSKDSKVFPRKDNPDSSEVSC-I--DYWEASQDR---YD---EIVANDGMPLKS-----DASSKGVYKPEEFTV 194 (1005)
T ss_pred ccccC-cccccccCCcCCCCcccccch-h--hhhhcccCc---cc---ceeeccCCcCcc-----cccccccccCccccc
Confidence 21111 112223333344443 445 1 111111110 00 111122222221 224469999999999
Q ss_pred CCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccchhccccc-Cccccc
Q 036712 225 GDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKC-EPTQLH 303 (1020)
Q Consensus 225 gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~-~q~~~~ 303 (1020)
||+||+|.|++.+.||+.++||..++|..|+..+.+...+|+|||.++..+.+||+|+.++|++||....+.+ .|+++.
T Consensus 195 e~~~~~~~~~~~~~~~a~~~d~~~~~~~~v~as~~~~~~~~~~~~~s~~~~~~~~~~~r~~m~~~~~~~~~~~~~~~~~~ 274 (1005)
T KOG1080|consen 195 GDLVWAKSGRNEPPWPAIVIDPIRQAPRGVLASCLPVAACVMFFGNSGVPTERDYAWVRRGMERPFSRPVRPFQDQTELK 274 (1005)
T ss_pred chhhhcccccCCcccccceeehhhcchhhhhccCcchhhhheeeeccCCccccchhhhhhccccccchhhhhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCChHHHHHHHHHHHHhcCCcc-----ccccccCCCCChh-hhccccccccCCCCCccCCccccc---------cccCcc
Q 036712 304 KSKISGFQIALEEAVLAENGFL-----DLNLGIGQIGPEA-YSRRGQEATGSGQDLEYCPQNQNA---------CYKVAR 368 (1020)
Q Consensus 304 ~~k~~~f~~Aleea~~ae~g~~-----d~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~---------~~~~~~ 368 (1020)
..+...|++|++||.+||+|+. ++++..++.+++. .+.+..+...+.++.....+.+.- ..-...
T Consensus 275 ~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~v~~~~~~~~~~~ 354 (1005)
T KOG1080|consen 275 REKARSFEQALEEAGLAEQGNWKKDVDDAHLITGDSSATDSALSEGGPSSFSELQKLHEKGFIKSHSSVFRKSDKIHVPS 354 (1005)
T ss_pred ccCccchhHHHHHhhccccccccccccchhhhcCCCccchhhhhccccccccccccccccCCccccccccCCCccccccc
Confidence 9999999999999999999999 5666666777765 566666666666665555444431 256778
Q ss_pred ccCCCCCcCCCCc-cccccccccCcccchhhHhhhcCcCccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcc
Q 036712 369 VCDGCGLFRPCKL-KRMKGLVSETQFLCKHCSKLQKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKD 447 (1020)
Q Consensus 369 ~C~~Cg~~~p~k~-~~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~ 447 (1020)
.|.+|........ +++++...+..++|+.|..+....+.|++|+.++++.+...|+.|+.|+.|+|..|+.+..+.+..
T Consensus 355 ~~~~~~~~p~~~~~~~~~~~~~~~~l~~k~~~~~~~s~~~~g~~~~~~~~~~~~d~~~~~~c~~~~~~~~~~~~~~~~~~ 434 (1005)
T KOG1080|consen 355 TSITKSPPPIAKSAKKTKALPPAQGLLCKECSDETKSNQTCGICKRIWHSSDSGDWVRCDGCDVWIHARCDKISSEKFKY 434 (1005)
T ss_pred cccccCCCCchhhccccCcccccchhhhhhhhchhhccccccccceecccccccceeeecccccceeeccCccccccccc
Confidence 8999998877777 889998888899999999999999999999999999999999999999999999999998875554
Q ss_pred cCCCce-----------------eCCCcCccccCCCCCcCCCCCCCCcccCCCCccCCCceeEeecccccccccccceee
Q 036712 448 LEHIDY-----------------YCPNCRVKFKFQSSNIGKWQPGVSAVENDGQMVLPDKIMVVCNDVEGAYFPKLHLVV 510 (1020)
Q Consensus 448 l~~~~Y-----------------~Cp~C~~~~~~~~~~~~~~~~k~ks~~~~~~~~~~e~l~V~C~~~~g~l~~k~~~i~ 510 (1020)
..+..+ +|+.|.-.+.....++. ...++.+.
T Consensus 435 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~s~~~~--------------------------------~~~~~~~~ 482 (1005)
T KOG1080|consen 435 SSSGMHNYQTLNFPQEYTALNLSYCPKCKLTFDDLSTDLS--------------------------------PAALARVF 482 (1005)
T ss_pred ccccccccccccchhhhhhhhccccchhheecccccccCC--------------------------------cchheeee
Confidence 422221 34444433222211110 23456678
Q ss_pred eccccCCCcccCchhhhhccCccccCcccceeecCcccchhhHHHHHhhcccC-----CCC--chhhhH--HHHHHHhhh
Q 036712 511 CRCRSCGPKKLTLSEWERHTGCRAKKWKYSVKVLGTMLPLGKWTMQITEFNAD-----AMD--PVKLDE--KKLLAFMKE 581 (1020)
Q Consensus 511 CkC~~c~~~~~SpSefE~h~Gsr~K~wk~sIr~k~~~~pL~~~l~~~~e~~~~-----~~~--~~~~~~--~~ll~~l~~ 581 (1020)
+.+..+...+..+++||+|.+.++++|+...++++..++|-.|......+... ..+ ...... ...+..+-.
T Consensus 483 ~~~~~~~~~k~~~~e~~k~~~~~~~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~s~~~~~~~s~~~~~~~~~~ 562 (1005)
T KOG1080|consen 483 HMLRYSVKKKKFLSEWERHTGATAKIWKDSSRVKDELLPLPKWVESRGRSIMNTYNSEKPKSIVLMGKTSVQRMLLELIE 562 (1005)
T ss_pred cccCcchhhhhcccchhhhhcccccccccccccccccccchhhhhhccccccccccccCCcchhhhccchhhhhcCcccc
Confidence 88888888889999999999999999999999999999999999765433221 111 111111 112222224
Q ss_pred cCCCCCCCCCcccccccccCccCCCCcEEEcCCCCchhcCcccCCcccCCCCceeeccCCCCCcc-------cccCcCCc
Q 036712 582 KYEPVSVKWTTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCRACEMPNAE-------RKWGALKP 654 (1020)
Q Consensus 582 ~~~p~~~~~~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W~C~~C~~~~~~-------~~gGaLk~ 654 (1020)
.+.+....|+.+.|.+|.+.+.+..|.++.|+.|.+.+|..|||....+....|+|..|...... .++|||++
T Consensus 563 ~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~g~al~p 642 (1005)
T KOG1080|consen 563 KREPRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCETLDIKRSCCLCPVKGGALKP 642 (1005)
T ss_pred cchhhhcCCCcccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhccccccCCchhhhccccCcccCC
Confidence 56677777888999999999999999999999999999999999999999889999999974222 28999999
Q ss_pred ccCCCcEEEEEeccccCcccccCCCCccccccccccCccccccccccccCCCceeeecCCccccccccccccCCeEEEEe
Q 036712 655 TDVQTLWVHVTCAWFRPEIGFLNHEKMEPATGILRIPTNLFLKSCIICKQTHGSCTQCCKCATYFHAMCASRAGYCMEIH 734 (1020)
Q Consensus 655 t~i~~~WvHv~CAlw~pev~~~d~~~~~pv~~i~~i~~~~~~~~C~iC~~~~Ga~IqC~~C~~~FHv~CAr~aGl~~e~~ 734 (1020)
++ .+.|+|+.||+|.|++.+.+...|.|+.++..++.......|.+ +|.|.||+.|.+.+|.+||.++++.++..
T Consensus 643 ~d-~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 717 (1005)
T KOG1080|consen 643 TD-EGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI----HGSCRQCCKCETGSHAMCASRAGYIMEAV 717 (1005)
T ss_pred CC-ccchhhhhchhccccccCCCccCCCCcccccccCccchhhhccc----cccccccchhhhcceehhhcCccChhhhh
Confidence 99 99999999999999999999999999999999999988888888 68999999999999999999999999988
Q ss_pred eeccccccccceEEecccccCCCCCceeeeccCCCcccchhhhhcccccccCCcccccccccC----CCCCCCCCCCCCc
Q 036712 735 SLERYGKQITRKLIYCAVHRTPNPDAVVAFHTPTGVFAGRSLLQNQRGCFRGSRLVSAKRTED----SESPSPDTNDFEP 810 (1020)
Q Consensus 735 ~~~~~g~~~~~~~~yC~~H~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~gsRl~s~~R~e~----~~~~~~e~~~~~p 810 (1020)
.++..+.+.+.+.- |..+.++.++.+++|++.+.++...++++++..|.+++...+... .....+....++.
T Consensus 718 ~l~~~~~~~~~~~~----~~~~~~d~~l~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1005)
T KOG1080|consen 718 SLEEVSQQTTSYVK----EDGPGPDSVLKVNTPSGKFGAENLSQNKKSRTDGVRLVLTYKEYAPLREIKSRAEPLNRIDF 793 (1005)
T ss_pred hhhhhhhhhhhhhh----hccCCcccceeecCccccccccchhhhhhccccccccccccccccccccchhcccCCcccCc
Confidence 87776665544322 888999999999999999999999999888888999888776432 1223344557777
Q ss_pred chhhhhhhccccc--CccCCCCCCCCCCCCCccCCcccccccccccccC-Ccccc-hhhHHHHHH-hhccCcccEEEEec
Q 036712 811 LSASRCRVFKRSK--NKSMEREPICHRPMGPRHHSLDAVISLNTYKEVD-KPEIF-SSFKERLYH-LQRTEKHRVCFGKS 885 (1020)
Q Consensus 811 ~~~Ar~~~~~r~~--~k~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~r~~~-~q~~~~~~l~v~~s 885 (1020)
...+++..+.+.. .+.+..+++.+...+...|....+..|+++.... -..++ ....+-++. .++.++++|.++++
T Consensus 794 ~s~~~~~~~~r~~~~~~~~~~~s~~~~~s~~~s~~~s~~~rl~q~rl~a~~~~~~~~~~~~~~~~~~~~~rkk~~~F~~s 873 (1005)
T KOG1080|consen 794 SSEARCRSESRSDNSKSPLAEESESDITSGGSSHDLSAEERLNQFRLSASFTASFILDEAEVLRYNQLKFRKKYVKFGRS 873 (1005)
T ss_pred cccccccchhhcccccccccccccccccccccccchhHHhhhHHHHhhhhcccccccchHHHHHHHHHhhhhhhhccccc
Confidence 8888888877654 5566788889999999999999998888764211 11111 111222222 24456677999999
Q ss_pred CCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhcC-CceEEEEeCCeEEEecccCCCcccccCCCCCCCeeE
Q 036712 886 GIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEG-KDCYLFKISEEVVIDATNKGNIARLINHSCMPNCYA 964 (1020)
Q Consensus 886 ~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~~-~~~Y~f~i~~~~vIDa~~~GNiaRfINHSC~PN~~~ 964 (1020)
.||||||||.++|.+|+||+||+||+|+...++.||..|...| .++|+|.++.++|||||..|||||||||||+|||++
T Consensus 874 ~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InHsC~PNCya 953 (1005)
T KOG1080|consen 874 GIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFINHSCNPNCYA 953 (1005)
T ss_pred cccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhheeecccCCCcee
Confidence 9999999999999999999999999999999999999999998 589999999999999999999999999999999999
Q ss_pred EEEEECCCeeEEEEEEccCCCCCCeEEEecCCCCCCCCCCCeeeecCCcCcccccC
Q 036712 965 RIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDEHDELKVPCLCKAPNCRMFMN 1020 (1020)
Q Consensus 965 ~~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~~~~~~~~~~~~C~CGs~~CRg~ln 1020 (1020)
+++.|+| ..+|+|||.|+|.+||||||||.|..++. +++|+|||++||||||
T Consensus 954 kvi~V~g-~~~IvIyakr~I~~~EElTYDYkF~~e~~---kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen 954 KVITVEG-DKRIVIYSKRDIAAGEELTYDYKFPTEDD---KIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred eEEEecC-eeEEEEEEecccccCceeeeecccccccc---ccccccCCCccccccC
Confidence 9999988 66999999999999999999999986543 7999999999999999
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-35 Score=338.94 Aligned_cols=171 Identities=32% Similarity=0.548 Sum_probs=154.4
Q ss_pred cccccccccccCCcc---cchhhHHHHHHhhccCcccEEEEecCCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHH
Q 036712 846 AVISLNTYKEVDKPE---IFSSFKERLYHLQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREK 922 (1020)
Q Consensus 846 ~~~~l~~~~~~~~~~---~~~~~~~r~~~~q~~~~~~l~v~~s~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~ 922 (1020)
+..++|.+..+++.- ..+.-.|.|.++|+.+.-+|.|+.+..+||||.|.++|++|+||+||.||||...++..|..
T Consensus 85 g~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~ 164 (729)
T KOG4442|consen 85 GEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVK 164 (729)
T ss_pred CccccchhhhcccCCccCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHH
Confidence 445667666555443 22345688888999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC-ceEEEEeCCeEEEecccCCCcccccCCCCCCCeeEEEEEECCCeeEEEEEEccCCCCCCeEEEecCCCCCCC
Q 036712 923 QYRKEGK-DCYLFKISEEVVIDATNKGNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDEH 1001 (1020)
Q Consensus 923 ~y~~~~~-~~Y~f~i~~~~vIDa~~~GNiaRfINHSC~PN~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~~~~~~ 1001 (1020)
.|..++. +.|+|.+..+.+||||.+||+||||||||+|||++..|+|+| +.||.|||.|.|.+||||||||+|+.++.
T Consensus 165 ~Y~~d~~kh~Yfm~L~~~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~-~lRvGiFakk~I~~GEEITFDYqf~rYGr 243 (729)
T KOG4442|consen 165 RYAKDGIKHYYFMALQGGEYIDATKKGNLARFINHSCDPNAEVQKWTVPD-ELRVGIFAKKVIKPGEEITFDYQFDRYGR 243 (729)
T ss_pred HHHhcCCceEEEEEecCCceecccccCcHHHhhcCCCCCCceeeeeeeCC-eeEEEEeEecccCCCceeeEecccccccc
Confidence 9988875 788889999999999999999999999999999999999987 89999999999999999999999998876
Q ss_pred CCCCeeeecCCcCccccc
Q 036712 1002 DELKVPCLCKAPNCRMFM 1019 (1020)
Q Consensus 1002 ~~~~~~C~CGs~~CRg~l 1019 (1020)
+. .+|+||+++|||||
T Consensus 244 ~A--Q~CyCgeanC~G~I 259 (729)
T KOG4442|consen 244 DA--QPCYCGEANCRGWI 259 (729)
T ss_pred cc--cccccCCccccccc
Confidence 64 56999999999998
No 3
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=99.97 E-value=1.3e-31 Score=309.10 Aligned_cols=163 Identities=37% Similarity=0.762 Sum_probs=151.5
Q ss_pred CcccccccccCccCCCCcEEEcCCCCchhcCcccCCcccCCCCceeeccCCCCCccc------ccCcCCcccCCCcEEEE
Q 036712 591 TTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCRACEMPNAER------KWGALKPTDVQTLWVHV 664 (1020)
Q Consensus 591 ~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W~C~~C~~~~~~~------~gGaLk~t~i~~~WvHv 664 (1020)
++..|+||..++.++.|+|++||+|+++||+.||||..+|+ ++|+|+.|..+..+. +||+||++.....|+|+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~-gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPE-GPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecCC-CCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 78899999999999999999999999999999999999999 999999999886544 99999999988899999
Q ss_pred EeccccCcccccCCCCccccccccccCccccccccccccCCCceeeecC--CccccccccccccCCeEEEEeeecccccc
Q 036712 665 TCAWFRPEIGFLNHEKMEPATGILRIPTNLFLKSCIICKQTHGSCTQCC--KCATYFHAMCASRAGYCMEIHSLERYGKQ 742 (1020)
Q Consensus 665 ~CAlw~pev~~~d~~~~~pv~~i~~i~~~~~~~~C~iC~~~~Ga~IqC~--~C~~~FHv~CAr~aGl~~e~~~~~~~g~~ 742 (1020)
.||||+|||.|++.+.|+||..+..|+..+|.+.|.+|+.+.||||||+ +|.++||+.||+.+|+.|.++..+.+
T Consensus 349 sCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D--- 425 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKEND--- 425 (893)
T ss_pred eeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhhhhcCCeeeeeeccCC---
Confidence 9999999999999999999999999999999999999999999999997 69999999999999999998866532
Q ss_pred ccceEEecccccCCC
Q 036712 743 ITRKLIYCAVHRTPN 757 (1020)
Q Consensus 743 ~~~~~~yC~~H~~~~ 757 (1020)
...+..||.+|....
T Consensus 426 ~v~~~s~c~khs~~~ 440 (893)
T KOG0954|consen 426 EVKFKSYCSKHSDHR 440 (893)
T ss_pred chhheeecccccccc
Confidence 367899999998654
No 4
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.96 E-value=7.7e-31 Score=300.19 Aligned_cols=159 Identities=38% Similarity=0.789 Sum_probs=142.0
Q ss_pred ccccccccCccCCCCcEEEcCC--CCchhcCcccCCcccCCCCceeeccCCCCCcc---------cccCcCCcccCCCcE
Q 036712 593 ERCAICRWVEDWDYNKIIICNR--CQIAVHQECYGVTDVQDFTSWVCRACEMPNAE---------RKWGALKPTDVQTLW 661 (1020)
Q Consensus 593 ~~C~VC~~~e~~~~n~Ll~Cd~--C~~~vH~~CYgv~~~p~~~~W~C~~C~~~~~~---------~~gGaLk~t~i~~~W 661 (1020)
--|+||-+...|.+|+|++||+ |.++|||.||||..+|. ++|||+.|+..... -+.||||+|+ .+-|
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPt-GpWfCrKCesqeraarvrCeLCP~kdGALKkTD-n~GW 83 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPT-GPWFCRKCESQERAARVRCELCPHKDGALKKTD-NGGW 83 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCC-CchhhhhhhhhhhhccceeecccCcccceeccc-CCCc
Confidence 3499999999999999999996 99999999999999999 99999999853221 1889999999 7889
Q ss_pred EEEEeccccCcccccCCCCccccccccccCccccccccccccCC-------CceeeecC--CccccccccccccCCeEEE
Q 036712 662 VHVTCAWFRPEIGFLNHEKMEPATGILRIPTNLFLKSCIICKQT-------HGSCTQCC--KCATYFHAMCASRAGYCME 732 (1020)
Q Consensus 662 vHv~CAlw~pev~~~d~~~~~pv~~i~~i~~~~~~~~C~iC~~~-------~Ga~IqC~--~C~~~FHv~CAr~aGl~~e 732 (1020)
+||+||||||||.|.|...|+||. +..+|.+++.+.|+||... .|||++|+ .|.+.|||+||+++||..|
T Consensus 84 AHVVCALYIPEVrFgNV~TMEPIi-Lq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCE 162 (900)
T KOG0956|consen 84 AHVVCALYIPEVRFGNVHTMEPII-LQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCE 162 (900)
T ss_pred eEEEEEeeccceeeccccccccee-eccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhcccee
Confidence 999999999999999999999987 8899999999999999953 69999997 5999999999999999988
Q ss_pred EeeeccccccccceEEecccccCCC
Q 036712 733 IHSLERYGKQITRKLIYCAVHRTPN 757 (1020)
Q Consensus 733 ~~~~~~~g~~~~~~~~yC~~H~~~~ 757 (1020)
++.+..+.+++--||+.|...-
T Consensus 163 ---E~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 163 ---EEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred ---ccccccccceechhHHHHHHHh
Confidence 3345566688999999998653
No 5
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.96 E-value=5.7e-30 Score=314.33 Aligned_cols=166 Identities=40% Similarity=0.792 Sum_probs=152.3
Q ss_pred CCcccccccccCccCCCCcEEEcCCCCchhcCcccCCcccCCCCceeeccCCCCCccc--------ccCcCCcccCCCcE
Q 036712 590 WTTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCRACEMPNAER--------KWGALKPTDVQTLW 661 (1020)
Q Consensus 590 ~~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W~C~~C~~~~~~~--------~gGaLk~t~i~~~W 661 (1020)
..|..|+||.+++..+.|.+++||+|+++|||+|||+..+|+ +.|+|+.|....+.. .+||+++|+ +|+|
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipe-g~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~-dgrw 294 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPE-GQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTD-DGRW 294 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCC-CcEeehhhccCcCcccceEeccCCCCcceecc-CCce
Confidence 456899999999999999999999999999999999999999 999999999876544 899999998 9999
Q ss_pred EEEEeccccCcccccCCCCccccccccccCccccccccccccCCC-ceeeecC--CccccccccccccCCeEEEEeeecc
Q 036712 662 VHVTCAWFRPEIGFLNHEKMEPATGILRIPTNLFLKSCIICKQTH-GSCTQCC--KCATYFHAMCASRAGYCMEIHSLER 738 (1020)
Q Consensus 662 vHv~CAlw~pev~~~d~~~~~pv~~i~~i~~~~~~~~C~iC~~~~-Ga~IqC~--~C~~~FHv~CAr~aGl~~e~~~~~~ 738 (1020)
+|++||+|+|||.|.+...|+||.+|+.|+..+|++.|.+|++.+ |+||||. +|.++||++||+++|++|.+..+.+
T Consensus 295 ~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~agl~m~~~~~~~ 374 (1051)
T KOG0955|consen 295 AHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRAGLYMKSNTVKE 374 (1051)
T ss_pred eeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhcCceEeeccccc
Confidence 999999999999999999999999999999999999999999998 9999997 7999999999999999999665554
Q ss_pred ccc----cccceEEecccccCCC
Q 036712 739 YGK----QITRKLIYCAVHRTPN 757 (1020)
Q Consensus 739 ~g~----~~~~~~~yC~~H~~~~ 757 (1020)
.+. +...+.+||..|.++.
T Consensus 375 ~s~~~~s~~v~~~syC~~H~pp~ 397 (1051)
T KOG0955|consen 375 LSKNGTSQSVNKISYCDKHTPPG 397 (1051)
T ss_pred ccccccccccceeeeccCCCCch
Confidence 432 3467899999999983
No 6
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=99.96 E-value=5.8e-31 Score=292.10 Aligned_cols=176 Identities=30% Similarity=0.591 Sum_probs=155.0
Q ss_pred CCCCCCCC-CcccccccccCccCCCCcEEEcCCCCchhcCcccCCcccCCCCceeeccCCCCCccc--------ccCcCC
Q 036712 583 YEPVSVKW-TTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCRACEMPNAER--------KWGALK 653 (1020)
Q Consensus 583 ~~p~~~~~-~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W~C~~C~~~~~~~--------~gGaLk 653 (1020)
++|+.... .|+.|.+|.+.+.++.|.+++||+|.++|||+|||+.-+|+ |.|+|+.|..+...- ..||++
T Consensus 183 vepi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~pe-G~WlCrkCi~~~~~i~~C~fCps~dGaFk 261 (669)
T COG5141 183 VEPIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPE-GFWLCRKCIYGEYQIRCCSFCPSSDGAFK 261 (669)
T ss_pred ccccCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCc-chhhhhhhcccccceeEEEeccCCCCcee
Confidence 55555543 56899999999999999999999999999999999999999 999999999876543 789999
Q ss_pred cccCCCcEEEEEeccccCcccccCCCCccccccccccCccccccccccccCCCceeeecC--CccccccccccccCCeEE
Q 036712 654 PTDVQTLWVHVTCAWFRPEIGFLNHEKMEPATGILRIPTNLFLKSCIICKQTHGSCTQCC--KCATYFHAMCASRAGYCM 731 (1020)
Q Consensus 654 ~t~i~~~WvHv~CAlw~pev~~~d~~~~~pv~~i~~i~~~~~~~~C~iC~~~~Ga~IqC~--~C~~~FHv~CAr~aGl~~ 731 (1020)
+|. +|+|+|++||+|+||+.|.+...|+||.+|.+++..+|++.|.||+..+|+||||. +|.++||++||+++|+.+
T Consensus 262 qT~-dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag~f~ 340 (669)
T COG5141 262 QTS-DGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAGYFD 340 (669)
T ss_pred ecc-CCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcchhh
Confidence 998 89999999999999999999999999999999999999999999999999999997 799999999999999987
Q ss_pred EEeeeccccccccceEEecccccCCCCCc
Q 036712 732 EIHSLERYGKQITRKLIYCAVHRTPNPDA 760 (1020)
Q Consensus 732 e~~~~~~~g~~~~~~~~yC~~H~~~~~~~ 760 (1020)
.-.-....-.+..++-.||.+|.++...+
T Consensus 341 ~~~~s~n~~s~~id~e~~c~kh~p~gy~~ 369 (669)
T COG5141 341 LNIYSHNGISYCIDHEPLCRKHYPLGYGR 369 (669)
T ss_pred hhhhcccccceeecchhhhcCCCCcchhc
Confidence 63222223334467888999999987554
No 7
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.92 E-value=9.6e-26 Score=210.16 Aligned_cols=93 Identities=42% Similarity=0.739 Sum_probs=80.3
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccC-CCeEEEEEecccCCCCCcceeeeecCccccchhccccc-Cc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCI-PGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKC-EP 299 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~-~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~-~q 299 (1020)
+.+||||||||| +||||||+|+||. .+|+++...++ .+.+||+||| ++||+||.+++|+||+|++.++ .|
T Consensus 1 ~~~GdlVWaK~~-g~pwWPa~V~~~~-~~p~~~~~~~~~~~~~~V~Ffg------s~~y~Wv~~~~l~pf~e~~~~~~~~ 72 (95)
T cd05838 1 PLYGDIVWAKLG-NFRWWPAIICDPR-EVPPNIQVLRHCIGEFCVMFFG------THDYYWVHRGRVFPYQEGDKGFKEQ 72 (95)
T ss_pred CCcCCEEEEECC-CCCCCCeEEcChh-hcChhHhhccCCCCeEEEEEeC------CCCEEEeccccccchhhhhhhhhhh
Confidence 468999999996 8999999999997 88886654443 7999999999 9999999999999999998888 44
Q ss_pred cccccCChHHHHHHHHHHHHhcCCc
Q 036712 300 TQLHKSKISGFQIALEEAVLAENGF 324 (1020)
Q Consensus 300 ~~~~~~k~~~f~~Aleea~~ae~g~ 324 (1020)
+ ++++.+.|++|||||.+|..|+
T Consensus 73 ~--~~~~~~~f~~AleEA~~~~~~~ 95 (95)
T cd05838 73 T--KSYLAKRFRKALEEASLAFKGL 95 (95)
T ss_pred h--hhhhHHHHHHHHHHHHHHhhcC
Confidence 3 3478899999999999987653
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.89 E-value=7.8e-24 Score=244.56 Aligned_cols=134 Identities=40% Similarity=0.722 Sum_probs=125.9
Q ss_pred HHHHHHhhccCcccEEEEecCCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhcCCceEEEEeCCeEEEecc
Q 036712 866 KERLYHLQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYLFKISEEVVIDAT 945 (1020)
Q Consensus 866 ~~r~~~~q~~~~~~l~v~~s~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~~~~~Y~f~i~~~~vIDa~ 945 (1020)
.+++-.+|++.+.+|.++.|.+.|||||+++.+.++|||.||+||+|+..+++.|...|+... -+|+|.+..++||||+
T Consensus 582 ~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~-cSflFnln~dyviDs~ 660 (739)
T KOG1079|consen 582 SCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYM-CSFLFNLNNDYVIDST 660 (739)
T ss_pred ccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhccccccccc-ceeeeeccccceEeee
Confidence 466667899999999999999999999999999999999999999999999999999998864 5699999999999999
Q ss_pred cCCCcccccCCCCCCCeeEEEEEECCCeeEEEEEEccCCCCCCeEEEecCCCCCCC
Q 036712 946 NKGNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDEH 1001 (1020)
Q Consensus 946 ~~GNiaRfINHSC~PN~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~~~~~~ 1001 (1020)
+.||.+||+|||-+|||++.++.|.| .+||.|||+|.|.+||||||||+++....
T Consensus 661 rkGnk~rFANHS~nPNCYAkvm~V~G-dhRIGifAkRaIeagEELffDYrYs~~~~ 715 (739)
T KOG1079|consen 661 RKGNKIRFANHSFNPNCYAKVMMVAG-DHRIGIFAKRAIEAGEELFFDYRYSPEHA 715 (739)
T ss_pred eecchhhhccCCCCCCcEEEEEEecC-CcceeeeehhhcccCceeeeeeccCcccc
Confidence 99999999999999999999999987 79999999999999999999999986543
No 9
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.88 E-value=2.5e-23 Score=190.50 Aligned_cols=82 Identities=30% Similarity=0.677 Sum_probs=71.1
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccC-CCeEEEEEecccCCCCCcceeeeecCccccchhcccccCcc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCI-PGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKCEPT 300 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~-~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~~q~ 300 (1020)
|.+|||||||| ++||||||+|++|. .++.+... .+.++||||| ++||+||.+.+|+||.+++++|+
T Consensus 1 f~~GDlVwaK~-~g~P~WPa~V~~~~----~~~~~~~~~~~~~~V~FFG------~~~~~wv~~~~l~pF~~~~~~~~-- 67 (86)
T cd05836 1 LKLGDLVWAKM-KGFPPWPGRIVKPP----KDLKKPRGKAKCFFVFFFG------SENHAWIKEENIKPYHEHKEEMI-- 67 (86)
T ss_pred CCCCCEEEEeC-CCCCCCCEEEechh----hhcccccCCCCeEEEEEeC------CCCEEEECHHhCeechhhHHHHh--
Confidence 78999999999 59999999999984 45544433 5899999999 88999999999999999999994
Q ss_pred ccccCChHHHHHHHHHHH
Q 036712 301 QLHKSKISGFQIALEEAV 318 (1020)
Q Consensus 301 ~~~~~k~~~f~~Aleea~ 318 (1020)
+.+|++.|++||+|+-
T Consensus 68 --~~~k~~~F~~Av~~ie 83 (86)
T cd05836 68 --KLNKGARFQQAVDAIE 83 (86)
T ss_pred --cccchHHHHHHHHHHH
Confidence 3468899999999983
No 10
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=99.87 E-value=5e-24 Score=237.48 Aligned_cols=160 Identities=29% Similarity=0.634 Sum_probs=136.6
Q ss_pred ccccccccCccCCCCcEEEcCCCCchhcCcccCCcc---cCC------CCceeeccCCCCCcc-------cccCcCCccc
Q 036712 593 ERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTD---VQD------FTSWVCRACEMPNAE-------RKWGALKPTD 656 (1020)
Q Consensus 593 ~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~---~p~------~~~W~C~~C~~~~~~-------~~gGaLk~t~ 656 (1020)
.+|.||......+-|+++.||+|++.||..|||+.. ++. ..+|||..|.++... .++|++|.++
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetD 199 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETD 199 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccc
Confidence 489999998888999999999999999999999883 221 257999999998763 2899999999
Q ss_pred CCCcEEEEEeccccCcccccCCCCccccccccccCccccccccccccC----CCceeeecC--CccccccccccccCCeE
Q 036712 657 VQTLWVHVTCAWFRPEIGFLNHEKMEPATGILRIPTNLFLKSCIICKQ----THGSCTQCC--KCATYFHAMCASRAGYC 730 (1020)
Q Consensus 657 i~~~WvHv~CAlw~pev~~~d~~~~~pv~~i~~i~~~~~~~~C~iC~~----~~Ga~IqC~--~C~~~FHv~CAr~aGl~ 730 (1020)
+ |+|||++|||++|.|.|++...+.+|.-.+..........|+.|.. ..|.||.|. .|.++|||+||+..|+.
T Consensus 200 i-grWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~GlL 278 (707)
T KOG0957|consen 200 I-GRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKLGLL 278 (707)
T ss_pred h-hhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhhcceeeeccchhhhhhhhhhHHhhhcce
Confidence 5 7999999999999999999999999875555555556689999996 479999996 79999999999999999
Q ss_pred EEEeeeccccccccceEEecccccCC
Q 036712 731 MEIHSLERYGKQITRKLIYCAVHRTP 756 (1020)
Q Consensus 731 ~e~~~~~~~g~~~~~~~~yC~~H~~~ 756 (1020)
++....++ ....+++||++|+..
T Consensus 279 vea~~e~D---iAdpfya~CK~Ht~r 301 (707)
T KOG0957|consen 279 VEATDEND---IADPFYAFCKKHTNR 301 (707)
T ss_pred eecccccc---chhhHHHHHHhhcch
Confidence 99775544 346689999999975
No 11
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.87 E-value=1.7e-21 Score=184.39 Aligned_cols=114 Identities=46% Similarity=0.762 Sum_probs=100.0
Q ss_pred EEEEecCCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhcCC-ceEEEEeCCeEEEecccCCCcccccCCCC
Q 036712 880 VCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGK-DCYLFKISEEVVIDATNKGNIARLINHSC 958 (1020)
Q Consensus 880 l~v~~s~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~~~-~~Y~f~i~~~~vIDa~~~GNiaRfINHSC 958 (1020)
+.+..++++|+||||+++|++|++|+||.|.++.......+...+...+. ..|+|.+...++||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 56777889999999999999999999999999988777766554444443 57899998889999999999999999999
Q ss_pred CCCeeEEEEEECCCeeEEEEEEccCCCCCCeEEEec
Q 036712 959 MPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDY 994 (1020)
Q Consensus 959 ~PN~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~DY 994 (1020)
.||+.+.....++ ..++.|+|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~-~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNG-DSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECC-CcEEEEEECCCcCCCCEEeecC
Confidence 9999998887754 4589999999999999999999
No 12
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=2.8e-22 Score=229.31 Aligned_cols=155 Identities=29% Similarity=0.399 Sum_probs=125.5
Q ss_pred hHHHHHHhhccCcccEEEEecCCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhcCC---ceEEE-------
Q 036712 865 FKERLYHLQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGK---DCYLF------- 934 (1020)
Q Consensus 865 ~~~r~~~~q~~~~~~l~v~~s~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~~~---~~Y~f------- 934 (1020)
..+.+|.+|++...+|+|.+++.+||||++.+.|++|++|+||+||+++..+++.+...+..... ..+.+
T Consensus 163 ~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (364)
T KOG1082|consen 163 PDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDE 242 (364)
T ss_pred CcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhcccccc
Confidence 45677889999999999999999999999999999999999999999999998876433222211 11111
Q ss_pred --------------EeCCeEEEecccCCCcccccCCCCCCCeeEEEEEECCC---eeEEEEEEccCCCCCCeEEEecCCC
Q 036712 935 --------------KISEEVVIDATNKGNIARLINHSCMPNCYARIMSVGDC---ESRIVLIAKTNVSAGDELTYDYLFD 997 (1020)
Q Consensus 935 --------------~i~~~~vIDa~~~GNiaRfINHSC~PN~~~~~v~v~~~---~~ri~l~A~RdI~~GEELT~DY~~~ 997 (1020)
.....+.|||...||++|||||||.||+.+..+..+.. ..+|+|||+++|.+||||||||+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 243 SPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKA 322 (364)
T ss_pred ccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccc
Confidence 12467999999999999999999999999988877632 3689999999999999999999965
Q ss_pred CC-----CC----CCCCeeeecCCcCccccc
Q 036712 998 PD-----EH----DELKVPCLCKAPNCRMFM 1019 (1020)
Q Consensus 998 ~~-----~~----~~~~~~C~CGs~~CRg~l 1019 (1020)
.. +. ...+..|.||+.+||+.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~ 353 (364)
T KOG1082|consen 323 YKLLVQDGANIYTPVMKKNCNCGLEKCRGLL 353 (364)
T ss_pred ccccccccccccccccchhhcCCCHHhCccc
Confidence 32 11 234678999999999975
No 13
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.86 E-value=3.5e-22 Score=181.72 Aligned_cols=80 Identities=38% Similarity=0.559 Sum_probs=70.1
Q ss_pred CCCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccchhcccccCcc
Q 036712 221 DFALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKCEPT 300 (1020)
Q Consensus 221 ~~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~~q~ 300 (1020)
+|.+|||||||| +|||||||+|+++. +. ...++.++|+||| ++|||||...+|+||.+++++|.
T Consensus 2 ~f~~GdlVwaK~-kGyp~WPa~I~~~~-~~------~~~~~~~~V~FfG------t~~~a~v~~~~l~pf~~~~~~~~-- 65 (83)
T cd05834 2 QFKAGDLVFAKV-KGYPAWPARVDEPE-DW------KPPGKKYPVYFFG------THETAFLKPEDLFPYTENKKKFG-- 65 (83)
T ss_pred CCCCCCEEEEec-CCCCCCCEEEeccc-cc------CCCCCEEEEEEeC------CCCEeEECHHHceecccchhhhc--
Confidence 699999999999 79999999999986 22 3347899999999 88999999999999999999982
Q ss_pred ccccCChHHHHHHHHHHH
Q 036712 301 QLHKSKISGFQIALEEAV 318 (1020)
Q Consensus 301 ~~~~~k~~~f~~Aleea~ 318 (1020)
+.++.+.|++||+|+-
T Consensus 66 --~~~k~k~F~~Av~eie 81 (83)
T cd05834 66 --KPKKRKGFNEAVWEIE 81 (83)
T ss_pred --cccchHHHHHHHHHHh
Confidence 2368899999999983
No 14
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.86 E-value=4.1e-22 Score=183.06 Aligned_cols=86 Identities=30% Similarity=0.556 Sum_probs=73.0
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccchhcccccCccc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKCEPTQ 301 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~~q~~ 301 (1020)
|.+|||||||| ++||||||+|+++. ..+. ....++.++|+||| +++|+||.+.+|+||.|+.++|.+.
T Consensus 1 f~vGDlVWaK~-kg~pwWP~~V~~~~-~~~~---~~~~~~~~~V~fFG------s~~~a~v~~~~l~pf~e~~~~f~~~- 68 (87)
T cd05835 1 FNVGDLVWGKI-KGFPWWPGRVVSIT-VTSK---RPPVVGMRWVTWFG------SGTFSEVSVDKLSPFSEFFKAFSRY- 68 (87)
T ss_pred CCCCCEEEEec-CCCCCCCeEEechh-hccc---ccCCCCeEEEEEeC------CCCEeEECHHHCcChhHhHHHHhhh-
Confidence 78999999999 79999999999985 3332 24458999999999 7889999999999999999998444
Q ss_pred cccCChHHHHHHHHHHHHh
Q 036712 302 LHKSKISGFQIALEEAVLA 320 (1020)
Q Consensus 302 ~~~~k~~~f~~Aleea~~a 320 (1020)
++.|.+.|++||+||.++
T Consensus 69 -~~~k~~~f~~Ai~eA~e~ 86 (87)
T cd05835 69 -NRKKKGLYKKAIYEALEV 86 (87)
T ss_pred -hhhhhHHHHHHHHHHHHc
Confidence 345689999999999775
No 15
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.85 E-value=2.1e-22 Score=239.81 Aligned_cols=135 Identities=33% Similarity=0.507 Sum_probs=118.3
Q ss_pred HHHHHhhc-cCcccEEEEecCCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhcCCceEEEEeCCeEEEecc
Q 036712 867 ERLYHLQR-TEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYLFKISEEVVIDAT 945 (1020)
Q Consensus 867 ~r~~~~q~-~~~~~l~v~~s~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~~~~~Y~f~i~~~~vIDa~ 945 (1020)
+++.+||+ +..++|.+.+.+.+||||.|+++|++||||+||+||||+..+...+....-....+.|...|+.+++||+.
T Consensus 1166 c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p~l~id~~ 1245 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDPGLFIDIP 1245 (1306)
T ss_pred hhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCccccCChh
Confidence 55555655 66789999999999999999999999999999999999887776663322333457799999999999999
Q ss_pred cCCCcccccCCCCCCCeeEEEEEECCCeeEEEEEEccCCCCCCeEEEecCCCCCCCC
Q 036712 946 NKGNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDEHD 1002 (1020)
Q Consensus 946 ~~GNiaRfINHSC~PN~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~~~~~~~ 1002 (1020)
++||.+|||||||.|||.++.+.|+| +.||+|||+|||.+||||||||++..++..
T Consensus 1246 R~~n~~RfinhscKPNc~~qkwSVNG-~~Rv~L~A~rDi~kGEELtYDYN~ks~~~p 1301 (1306)
T KOG1083|consen 1246 RMGNGARFINHSCKPNCEMQKWSVNG-EYRVGLFALRDLPKGEELTYDYNFKSFNYP 1301 (1306)
T ss_pred hccccccccccccCCCCccccccccc-eeeeeeeecCCCCCCceEEEeccccccCCc
Confidence 99999999999999999999999997 899999999999999999999998766544
No 16
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=99.84 E-value=2.8e-21 Score=177.43 Aligned_cols=86 Identities=40% Similarity=0.759 Sum_probs=75.9
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccchhcccccCccc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKCEPTQ 301 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~~q~~ 301 (1020)
|.+|||||||+ ++||||||+|++|. ..+..+++....+.++|+||| +++|+||..++|+||.++..+.
T Consensus 1 f~~GdlVwaK~-~g~pwWPa~V~~~~-~~~~~~~~~~~~~~~~V~Ffg------~~~~~wv~~~~l~pf~~~~~~~---- 68 (87)
T cd05162 1 FRPGDLVWAKM-KGYPWWPALVVDPP-KDSKKAKKKAKEGKVLVLFFG------DKTFAWVGAERLKPFTEHKESE---- 68 (87)
T ss_pred CCCCCEEEEeC-CCCCCCCEEEcccc-ccchhhhccCCCCEEEEEEeC------CCcEEEeCccceeeccchHHhh----
Confidence 78999999999 59999999999997 778877766678999999999 8999999999999999997663
Q ss_pred cccCChHHHHHHHHHHHH
Q 036712 302 LHKSKISGFQIALEEAVL 319 (1020)
Q Consensus 302 ~~~~k~~~f~~Aleea~~ 319 (1020)
.++.+.+.|++||+||.+
T Consensus 69 ~~~~k~~~f~~A~~eA~~ 86 (87)
T cd05162 69 AKQSKRKGFKKAYDEALE 86 (87)
T ss_pred ccCCccHHHHHHHHHHHh
Confidence 345688999999999964
No 17
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.80 E-value=4.5e-20 Score=171.34 Aligned_cols=86 Identities=36% Similarity=0.534 Sum_probs=72.1
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhc---ccCCCeEEEEEecccCCCCCcceeeeecCccccchhc-cccc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLR---CCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEF-MDKC 297 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~---~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~-~~~~ 297 (1020)
|.+|||||||| ++||||||+|++|. .+|+.+++ ....+.+||+||| +++|+||.+.+|+||.+. .+.|
T Consensus 1 f~~GDlVwaK~-~GyPwWPA~V~~~~-~~p~~~l~~~~~~~~~~~~V~FFg------~~~~~Wv~~~~l~pl~~~~~~~~ 72 (93)
T cd05840 1 FQPGDRVLAKV-KGFPAWPAIVVPEE-MLPDSVLKGKKKKNKRTYPVMFFP------DGDYYWVPNKDLKPLTEEKIAKF 72 (93)
T ss_pred CCCCCEEEEeC-CCCCCCCEEECChH-HCCHHHHhcccCCCCCeEEEEEeC------CCcEEEEChhhcccCCHHHHHHH
Confidence 78999999999 49999999999997 89999873 3348999999999 889999999999999955 5556
Q ss_pred -CccccccCChHHHHHHHHHHH
Q 036712 298 -EPTQLHKSKISGFQIALEEAV 318 (1020)
Q Consensus 298 -~q~~~~~~k~~~f~~Aleea~ 318 (1020)
+.. +.|.+.+.+|.+.|.
T Consensus 73 l~~~---~~k~k~l~~ay~~A~ 91 (93)
T cd05840 73 LKKP---KRKDKELIKAYKAAK 91 (93)
T ss_pred hhcC---CCCCHHHHHHHHHhc
Confidence 322 246788999998884
No 18
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.80 E-value=5.3e-20 Score=176.06 Aligned_cols=100 Identities=43% Similarity=0.823 Sum_probs=92.8
Q ss_pred ccCcCCcccCCCcEEEEEeccccCcccccCCCCccccccccccCccccccccccccCCCceeeecCC--ccccccccccc
Q 036712 648 KWGALKPTDVQTLWVHVTCAWFRPEIGFLNHEKMEPATGILRIPTNLFLKSCIICKQTHGSCTQCCK--CATYFHAMCAS 725 (1020)
Q Consensus 648 ~gGaLk~t~i~~~WvHv~CAlw~pev~~~d~~~~~pv~~i~~i~~~~~~~~C~iC~~~~Ga~IqC~~--C~~~FHv~CAr 725 (1020)
.+||||++. ++.|||+.||+|+|++.|.+...|+++. +..++.+++..+|.+|++..|++|+|.+ |.++||++||+
T Consensus 9 ~~Galk~t~-~~~WvHv~Cal~~~~~~~~~~~~~~~v~-~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 9 RGGALKRTS-DGQWVHVLCALWIPEVIFNNGESMEPVD-ISNIPPSRFKLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCCcccCcc-CCcEEEeEccceeCccEEeechhcCccc-ceeecchhcCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 589999998 8999999999999999999999999988 9999999999999999999999999985 99999999999
Q ss_pred cCCeEEEEeeeccccccccceEEecccc
Q 036712 726 RAGYCMEIHSLERYGKQITRKLIYCAVH 753 (1020)
Q Consensus 726 ~aGl~~e~~~~~~~g~~~~~~~~yC~~H 753 (1020)
.+|+.+++...+. ...+++||++|
T Consensus 87 ~~g~~~~~~~~~~----~~~~~~~C~~H 110 (110)
T PF13832_consen 87 KAGLYFEIENEED----NVQFIAYCPKH 110 (110)
T ss_pred HCCCeEEeeecCC----CceEEEECCCC
Confidence 9999999876554 36789999999
No 19
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=99.80 E-value=1.6e-20 Score=171.44 Aligned_cols=86 Identities=45% Similarity=0.780 Sum_probs=71.0
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccchhcccccCccc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKCEPTQ 301 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~~q~~ 301 (1020)
|.+|||||||+ ++||||||+|++|. ..+. +....+.++|+||| +++|+||..++|+||.++.+++.+.
T Consensus 1 f~~GdlVWaK~-~g~pwWPa~V~~~~-~~~~---~~~~~~~~~V~Ffg------~~~~~wv~~~~i~~f~~~~~~~~~~- 68 (86)
T PF00855_consen 1 FRPGDLVWAKL-KGYPWWPARVCDPD-EKSK---KKRKDGHVLVRFFG------DNDYAWVKPSNIKPFSEFKEKLKKK- 68 (86)
T ss_dssp -STTEEEEEEE-TTSEEEEEEEEECC-HCTS---CSSSSTEEEEEETT------TTEEEEEEGGGEEECCHHHHHHHHH-
T ss_pred CCCCCEEEEEe-CCCCCCceEEeecc-cccc---cCCCCCEEEEEecC------CCCEEEECHHHhhChhhhHHHHHHh-
Confidence 78999999999 59999999999996 3333 34558999999999 7789999999999999998887332
Q ss_pred cccCChHHHHHHHHHHHHh
Q 036712 302 LHKSKISGFQIALEEAVLA 320 (1020)
Q Consensus 302 ~~~~k~~~f~~Aleea~~a 320 (1020)
++.+.+.|++||+||..|
T Consensus 69 -~~~k~~~~~~Ai~eA~~~ 86 (86)
T PF00855_consen 69 -KKKKRKSFRKAIEEAEEA 86 (86)
T ss_dssp -HHHHSHHHHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHhC
Confidence 234668999999999753
No 20
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.77 E-value=1.5e-18 Score=183.82 Aligned_cols=126 Identities=30% Similarity=0.536 Sum_probs=112.3
Q ss_pred hhccCcccEEEEecCCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhc-CCceEEEEe---CCeEEEecccC
Q 036712 872 LQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKE-GKDCYLFKI---SEEVVIDATNK 947 (1020)
Q Consensus 872 ~q~~~~~~l~v~~s~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~-~~~~Y~f~i---~~~~vIDa~~~ 947 (1020)
+.++....+.+..-.++|+||+|++.++.|+||.||.|++|...++..|+..|..+ ..++|||.. +..++||||.-
T Consensus 250 vl~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~e 329 (392)
T KOG1085|consen 250 VLKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKE 329 (392)
T ss_pred HHhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeecccc
Confidence 56677778888877889999999999999999999999999999999999999665 567777754 67899999975
Q ss_pred -CCcccccCCCCCCCeeEEEEEECCCeeEEEEEEccCCCCCCeEEEecCCCC
Q 036712 948 -GNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDP 998 (1020)
Q Consensus 948 -GNiaRfINHSC~PN~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~~~ 998 (1020)
+-++|+||||-.+|+...++.+++ .+|++|+|.|||.+||||+|||+...
T Consensus 330 t~~lGRLINHS~~gNl~TKvv~Idg-~pHLiLvA~rdIa~GEELlYDYGDRS 380 (392)
T KOG1085|consen 330 TPWLGRLINHSVRGNLKTKVVEIDG-SPHLILVARRDIAQGEELLYDYGDRS 380 (392)
T ss_pred cccchhhhcccccCcceeeEEEecC-CceEEEEeccccccchhhhhhccccc
Confidence 557999999999999999999986 89999999999999999999998754
No 21
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.75 E-value=1.8e-18 Score=156.33 Aligned_cols=75 Identities=32% Similarity=0.584 Sum_probs=65.3
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccchhcccccCccc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKCEPTQ 301 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~~q~~ 301 (1020)
+..|||||||| +|||||||+|+++. .+.+.|+||| ++++||||...+|+||.++++++
T Consensus 7 ~~p~dLVwAK~-kGyp~WPAkV~~~~------------~~~~~V~FFG-----~t~~~a~v~~~~i~~~~~~~~~~---- 64 (83)
T cd05841 7 RPPHELVWAKL-KGFPYWPAKVMRVE------------DNQVDVRFFG-----GQHDRAWIPSNNIQPISTEIPQQ---- 64 (83)
T ss_pred CCCCCEEEEeC-CCCCCCCEEEeecC------------CCeEEEEEcC-----CCCCeEEEehHHeeehhhhhhhh----
Confidence 57899999999 79999999999874 2579999999 57779999999999999987765
Q ss_pred cccCChHHHHHHHHHHH
Q 036712 302 LHKSKISGFQIALEEAV 318 (1020)
Q Consensus 302 ~~~~k~~~f~~Aleea~ 318 (1020)
+++.+.+.|++||+||-
T Consensus 65 ~~~~k~~~f~~A~~Eie 81 (83)
T cd05841 65 LVKKRSRGFNKAMDELE 81 (83)
T ss_pred ccccccHHHHHHHHHHH
Confidence 44567889999999984
No 22
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=99.73 E-value=3.2e-18 Score=148.00 Aligned_cols=62 Identities=39% Similarity=0.920 Sum_probs=55.1
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhc-ccCCCeEEEEEecccCCCCCcceeeeecCccccch
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLR-CCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFA 291 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~-~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~ 291 (1020)
|.+|||||||| ++||||||+|+++. .+|+.+++ ....+.++|+||| +++||||.+.+|+||.
T Consensus 1 f~~GdlVwaK~-~G~p~WPa~V~~~~-~~~~~~~~~~~~~~~~~V~Ffg------~~~~awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKM-KGFPWWPALVVSPK-ETPDNIRKRKRFENLYPVLFFG------DKDTAWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEEC-CCCCCCCeEEcCcc-cCChhHhhccCCCCEEEEEEeC------CCCEEEECccceeeCC
Confidence 78999999999 69999999999997 77777655 3448999999999 9999999999999984
No 23
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=99.70 E-value=2.1e-17 Score=158.40 Aligned_cols=94 Identities=27% Similarity=0.367 Sum_probs=70.2
Q ss_pred CCCCCCEEEEeeCCCCCCCCceecCCCCCCchhh---hcccCCCeEEEEEecccCCCCCcceeeeecCccccchhccccc
Q 036712 221 DFALGDLVWAKCGRSYPAWPAVVIDPILQAPEAV---LRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKC 297 (1020)
Q Consensus 221 ~~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~---~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~ 297 (1020)
.|.+|||||||| ++||||||+|+++. .+|..+ .....++.|+|+||| ++++||||.+.+|+||.+..+..
T Consensus 2 ~~~~GdlVWaK~-~g~PwWPa~V~~~~-~~~~~~~~~~~~~~~~~~~V~FFG-----~~~~~aWv~~~~l~pf~~~~~~~ 74 (110)
T cd05837 2 KYQVGDLVWAKV-SGYPWWPCMVCSDP-LLGTYTKTKRNKRKPRQYHVQFFG-----DNPERAWISEKSLKPFKGSKQFE 74 (110)
T ss_pred CCCCCCEEEEeC-CCCCCCCEEEeccc-ccchhhhhhhccCCCCeEEEEEcC-----CCCCEEEecHHHccccCCchhhh
Confidence 689999999999 59999999999643 566554 334458999999999 34579999999999999986432
Q ss_pred -----CccccccCChHHHHHHHHHHHHhc
Q 036712 298 -----EPTQLHKSKISGFQIALEEAVLAE 321 (1020)
Q Consensus 298 -----~q~~~~~~k~~~f~~Aleea~~ae 321 (1020)
.....+....+.+++|.+++..||
T Consensus 75 ~~~~~~~~~~K~~~~~~~~~a~~~~~~~~ 103 (110)
T cd05837 75 SEKGEKFKVRKPNIKKARQKADIAIMQAE 103 (110)
T ss_pred hhhhhhhhccCCcchhHHHHHHHHHHHHH
Confidence 122234444567777777776553
No 24
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.63 E-value=5.2e-17 Score=192.47 Aligned_cols=144 Identities=33% Similarity=0.607 Sum_probs=123.3
Q ss_pred CcccEEEEecCCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhcCCceEEEEeCC-eEEEecccCCCccccc
Q 036712 876 EKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYLFKISE-EVVIDATNKGNIARLI 954 (1020)
Q Consensus 876 ~~~~l~v~~s~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~~~~~Y~f~i~~-~~vIDa~~~GNiaRfI 954 (1020)
...+..+..+.++|+||||.+.|++|++|+||.|++++..++..++..+...+....++.+.. ..++|+...|+.+|||
T Consensus 330 ~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~r~~ 409 (480)
T COG2940 330 RREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLLEDKDKVRDSQKAGDVARFI 409 (480)
T ss_pred ccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhccccchhhhhhhccccccee
Confidence 345566778899999999999999999999999999999999988888755555544555544 8899999999999999
Q ss_pred CCCCCCCeeEEEEEECCCeeEEEEEEccCCCCCCeEEEecCCCCCCCC------CCCeeeecCCcCcccccC
Q 036712 955 NHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDEHD------ELKVPCLCKAPNCRMFMN 1020 (1020)
Q Consensus 955 NHSC~PN~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~~~~~~~------~~~~~C~CGs~~CRg~ln 1020 (1020)
||||.||+....+.+++ ..++.++|+|||.+|||||+||+...+... .....|.||+..|+++||
T Consensus 410 nHS~~pN~~~~~~~~~g-~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480)
T COG2940 410 NHSCTPNCEASPIEVNG-IFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTMS 480 (480)
T ss_pred ecCCCCCcceecccccc-cceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCCCC
Confidence 99999999999887765 679999999999999999999998765533 135889999999999986
No 25
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.57 E-value=2e-15 Score=135.76 Aligned_cols=75 Identities=27% Similarity=0.370 Sum_probs=58.8
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccchhccccc-Ccc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKC-EPT 300 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~-~q~ 300 (1020)
|.+|||||||+ ++||||||+|.++. .. .+.+.|+|||++. .++|+....|+||.++.+.. .|+
T Consensus 1 f~~gdlVWaK~-~g~P~WPa~I~~~~-~~---------~~k~~V~FfG~~~-----~~a~~~~~~l~p~~~~~~~~ek~~ 64 (80)
T cd06080 1 FEKNDLVWAKI-QGYPWWPAVIKSIS-RK---------KQKARVNFIGDNM-----QSEKKGIRVVKRWLKHFDCTEKQK 64 (80)
T ss_pred CCCCCEEEEeC-CCCCCCCEEEeeec-CC---------CCEEEEEEeCCCC-----ceeccchhhcccccccHHHHHHHH
Confidence 78999999999 69999999998875 11 5689999999442 58999999999999998887 444
Q ss_pred ccccCChHHHHHHHHHH
Q 036712 301 QLHKSKISGFQIALEEA 317 (1020)
Q Consensus 301 ~~~~~k~~~f~~Aleea 317 (1020)
..++ -+++++.|
T Consensus 65 ~~~k-----~ke~~~~a 76 (80)
T cd06080 65 LTNK-----AKESYEQA 76 (80)
T ss_pred HHHH-----HHHHHHHH
Confidence 2222 45555554
No 26
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.56 E-value=1.2e-15 Score=178.34 Aligned_cols=80 Identities=35% Similarity=0.667 Sum_probs=73.4
Q ss_pred EEEecccCCCcccccCCCCCCCeeEEEEEECCCe---eEEEEEEccCCCCCCeEEEecCCCCCCCCCCCeeeecCCcCcc
Q 036712 940 VVIDATNKGNIARLINHSCMPNCYARIMSVGDCE---SRIVLIAKTNVSAGDELTYDYLFDPDEHDELKVPCLCKAPNCR 1016 (1020)
Q Consensus 940 ~vIDa~~~GNiaRfINHSC~PN~~~~~v~v~~~~---~ri~l~A~RdI~~GEELT~DY~~~~~~~~~~~~~C~CGs~~CR 1016 (1020)
++|||...||++||+||||.||+.++.+.++.+. +-++|||.+.|++|.|||+||++.........+.|.||+.+||
T Consensus 1179 yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1179 YVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCR 1258 (1262)
T ss_pred EEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhh
Confidence 8899999999999999999999999999986544 5689999999999999999999987777777899999999999
Q ss_pred ccc
Q 036712 1017 MFM 1019 (1020)
Q Consensus 1017 g~l 1019 (1020)
|.|
T Consensus 1259 grL 1261 (1262)
T KOG1141|consen 1259 GRL 1261 (1262)
T ss_pred ccc
Confidence 976
No 27
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.54 E-value=8.7e-15 Score=139.22 Aligned_cols=66 Identities=33% Similarity=0.657 Sum_probs=52.4
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCch--------hh-------hcccCCCeEEEEEecccCCCCCcceeeeecCc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPE--------AV-------LRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGM 286 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~--------~~-------~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~ 286 (1020)
+.+|||||||| ++||||||+|+||....++ ++ ........++|.||+ +++.|+||.+..
T Consensus 1 ~~pg~lVwaK~-~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd-----~~~s~~Wv~~~~ 74 (111)
T cd05839 1 LEPLTLVWAKC-RGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFD-----NKRTWQWLPGDK 74 (111)
T ss_pred CCCcCEeeeee-cCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEec-----CCCcceecCHHH
Confidence 46899999999 7999999999999744432 11 122336779999999 346799999999
Q ss_pred cccchhc
Q 036712 287 LFPFAEF 293 (1020)
Q Consensus 287 i~py~e~ 293 (1020)
|.||.+.
T Consensus 75 l~pl~~~ 81 (111)
T cd05839 75 LEPLGVD 81 (111)
T ss_pred Ccccccc
Confidence 9999976
No 28
>KOG1904 consensus Transcription coactivator [Transcription]
Probab=99.53 E-value=6.8e-15 Score=170.41 Aligned_cols=89 Identities=31% Similarity=0.540 Sum_probs=76.7
Q ss_pred CCCCCCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccchhccccc
Q 036712 218 KPEDFALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKC 297 (1020)
Q Consensus 218 ~~~~~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~ 297 (1020)
.+.+|.+|||||||| |+||+|||+|.+| +...+++ .+.+|.||||| |.++|||.+..||||+.++++|
T Consensus 9 ~~~~~~~GDLV~AKl-kgyp~WParI~~~----~~~~~kp-~pkky~V~FfG------T~e~Afl~p~dlqpy~~~k~~~ 76 (496)
T KOG1904|consen 9 AAGNFKCGDLVFAKL-KGYPPWPARIRNG----PDGAVKP-PPKKYTVFFFG------TKETAFLKPKDLQPYMLNKEKL 76 (496)
T ss_pred ccCCCCCCceeeecc-cCCCCCcccccCc----ccccccC-CCceeEEEEec------cCcccccchhhccchhhhhhhc
Confidence 367899999999999 6999999999887 5777666 78899999999 7778999999999999999999
Q ss_pred CccccccCChHHHHHHHHHHHHh
Q 036712 298 EPTQLHKSKISGFQIALEEAVLA 320 (1020)
Q Consensus 298 ~q~~~~~~k~~~f~~Aleea~~a 320 (1020)
++.+.. .-+.|.+||||+..|
T Consensus 77 g~~~k~--~~k~F~~av~eI~~a 97 (496)
T KOG1904|consen 77 GKPNKR--VWKGFIEAVEEIREA 97 (496)
T ss_pred ccchhh--hhHHHHHHHHHHHHH
Confidence 777444 127899999999754
No 29
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.43 E-value=3.8e-14 Score=130.72 Aligned_cols=86 Identities=29% Similarity=0.578 Sum_probs=76.6
Q ss_pred EEEeccccCcccccCCCC--ccccccccccCccccccccccccCCCceeeecC--CccccccccccccCCeEEEEeeecc
Q 036712 663 HVTCAWFRPEIGFLNHEK--MEPATGILRIPTNLFLKSCIICKQTHGSCTQCC--KCATYFHAMCASRAGYCMEIHSLER 738 (1020)
Q Consensus 663 Hv~CAlw~pev~~~d~~~--~~pv~~i~~i~~~~~~~~C~iC~~~~Ga~IqC~--~C~~~FHv~CAr~aGl~~e~~~~~~ 738 (1020)
|++||+|+|++.+.+... +.++.++..+...+++++|.+|++..|++|+|. +|.+.||++||+.+|+.++...
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~--- 77 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEFDE--- 77 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEEcc---
Confidence 889999999999998874 677888999999999999999999999999996 6999999999999999998653
Q ss_pred ccccccceEEeccccc
Q 036712 739 YGKQITRKLIYCAVHR 754 (1020)
Q Consensus 739 ~g~~~~~~~~yC~~H~ 754 (1020)
....+.+||++|+
T Consensus 78 ---~~~~~~~~C~~H~ 90 (90)
T PF13771_consen 78 ---DNGKFRIFCPKHS 90 (90)
T ss_pred ---CCCceEEEChhcC
Confidence 2246899999996
No 30
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.42 E-value=3.7e-13 Score=132.98 Aligned_cols=106 Identities=26% Similarity=0.357 Sum_probs=73.2
Q ss_pred ccEEEEccccCCCCEEEEEeeEEEehhHHhHH-------------------H-----------------HHhh-----hc
Q 036712 889 GWGLFARRHIQEGEMVVEYRGEQVTQSIADLR-------------------E-----------------KQYR-----KE 927 (1020)
Q Consensus 889 G~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~r-------------------e-----------------~~y~-----~~ 927 (1020)
|+||||+++|++|++|++..+.+++....... . .... ..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999886665431 0 0000 00
Q ss_pred ---------------CCceEEEEeCCeEEEecccCCCcccccCCCCCCCeeEEEEEECCCeeEEEEEEccCCCCCCeEEE
Q 036712 928 ---------------GKDCYLFKISEEVVIDATNKGNIARLINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTY 992 (1020)
Q Consensus 928 ---------------~~~~Y~f~i~~~~vIDa~~~GNiaRfINHSC~PN~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~ 992 (1020)
...............++.....++.|+||||.|||.+...... ....+.|+|.|+|++|||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~-~~~~~~~~a~r~I~~GeEi~i 159 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDG-DGGCLVVRATRDIKKGEEIFI 159 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEET-TTTEEEEEESS-B-TTSBEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeec-ccceEEEEECCccCCCCEEEE
Confidence 0001122223344566677788899999999999998876543 357999999999999999999
Q ss_pred ecC
Q 036712 993 DYL 995 (1020)
Q Consensus 993 DY~ 995 (1020)
+||
T Consensus 160 sYG 162 (162)
T PF00856_consen 160 SYG 162 (162)
T ss_dssp EST
T ss_pred EEC
Confidence 997
No 31
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.76 E-value=7.1e-09 Score=114.44 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=88.3
Q ss_pred CCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhcCCceEEEEeCCeEEEecccCCCcccccCCCCCCCeeEE
Q 036712 886 GIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYLFKISEEVVIDATNKGNIARLINHSCMPNCYAR 965 (1020)
Q Consensus 886 ~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~~~~~Y~f~i~~~~vIDa~~~GNiaRfINHSC~PN~~~~ 965 (1020)
...|=-|++++.+++|+=|--.+|-|+...+++++........+.+-||..-. -.|...-+.|+||||.|.|||+++
T Consensus 135 ~~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk---~caqLwLGPaafINHDCrpnCkFv 211 (453)
T KOG2589|consen 135 SQNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRK---RCAQLWLGPAAFINHDCRPNCKFV 211 (453)
T ss_pred cCCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeeccc---chhhheeccHHhhcCCCCCCceee
Confidence 34688899999999999999999999877777666433333333333333221 123344567999999999999875
Q ss_pred EEEECCCeeEEEEEEccCCCCCCeEEEecCCCCCCCCCCCeeeecCCcCccc
Q 036712 966 IMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDEHDELKVPCLCKAPNCRM 1017 (1020)
Q Consensus 966 ~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~~~~~~~~~~~~C~CGs~~CRg 1017 (1020)
. . +...+.|.++|||++|||||--|+..+++..+ ..|.|- .|-.
T Consensus 212 s--~--g~~tacvkvlRDIePGeEITcFYgs~fFG~~N--~~CeC~--TCER 255 (453)
T KOG2589|consen 212 S--T--GRDTACVKVLRDIEPGEEITCFYGSGFFGENN--EECECV--TCER 255 (453)
T ss_pred c--C--CCceeeeehhhcCCCCceeEEeecccccCCCC--ceeEEe--eccc
Confidence 4 3 24689999999999999999999999887765 347664 5543
No 32
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=98.65 E-value=4.3e-09 Score=95.85 Aligned_cols=67 Identities=36% Similarity=0.649 Sum_probs=56.0
Q ss_pred CCceeEeecccccccccccc---eeeeccccCCCcccCchhhhhccCc-cccCcccceeecCcccchhhHHHH
Q 036712 488 PDKIMVVCNDVEGAYFPKLH---LVVCRCRSCGPKKLTLSEWERHTGC-RAKKWKYSVKVLGTMLPLGKWTMQ 556 (1020)
Q Consensus 488 ~e~l~V~C~~~~g~l~~k~~---~i~CkC~~c~~~~~SpSefE~h~Gs-r~K~wk~sIr~k~~~~pL~~~l~~ 556 (1020)
...|+|+|+.++|+|++++. ....+||++.++++||+|||+++|. ++|+|+.||++.+ .||..|+++
T Consensus 8 ~~~lpVtCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr~~g--~~L~~li~~ 78 (82)
T PF01342_consen 8 DPELPVTCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIRCGG--EPLGKLIEK 78 (82)
T ss_dssp CSEEEEEETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSEETT--EEHHHHHHT
T ss_pred CCeEeeEeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEEECC--EEHHHHHhh
Confidence 67799999999999998776 3467999999999999999999999 8999999999966 478888853
No 33
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.60 E-value=1.3e-08 Score=84.07 Aligned_cols=51 Identities=43% Similarity=0.997 Sum_probs=42.4
Q ss_pred ccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCcc
Q 036712 407 YCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVK 461 (1020)
Q Consensus 407 ~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~ 461 (1020)
||.||++ .++++.||+||.|+.|||..|.+++......... .|+||.|+.+
T Consensus 1 ~C~vC~~---~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~-~w~C~~C~~~ 51 (51)
T PF00628_consen 1 YCPVCGQ---SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSG-DWYCPNCRPK 51 (51)
T ss_dssp EBTTTTS---SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSS-SBSSHHHHHC
T ss_pred eCcCCCC---cCCCCCeEEcCCCChhhCcccCCCChhhccCCCC-cEECcCCcCc
Confidence 6899998 5668999999999999999999999874444433 8999999853
No 34
>smart00258 SAND SAND domain.
Probab=98.58 E-value=2.7e-08 Score=87.90 Aligned_cols=63 Identities=27% Similarity=0.485 Sum_probs=56.1
Q ss_pred ceeEeecccccccccccce--eeeccccCCCcccCchhhhhccCc-cccCcccceeecCcccchhhHH
Q 036712 490 KIMVVCNDVEGAYFPKLHL--VVCRCRSCGPKKLTLSEWERHTGC-RAKKWKYSVKVLGTMLPLGKWT 554 (1020)
Q Consensus 490 ~l~V~C~~~~g~l~~k~~~--i~CkC~~c~~~~~SpSefE~h~Gs-r~K~wk~sIr~k~~~~pL~~~l 554 (1020)
.|+|+|++++|+|+.++.. +.++||++.++++||+|||.++|. ++|+|+.|||+.+.+ |..++
T Consensus 2 ~lpV~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~~g~~--Lr~L~ 67 (73)
T smart00258 2 ELPVTCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRCGGSS--LRTLM 67 (73)
T ss_pred ccceeeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchheeECCcc--HHHHH
Confidence 4789999999999988766 699999999999999999999998 999999999999964 45544
No 35
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.55 E-value=1.6e-08 Score=119.11 Aligned_cols=118 Identities=31% Similarity=0.529 Sum_probs=93.6
Q ss_pred EEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhcC-CceEEEEeCCeEEEecccCCCcccccCCCCCCCeeEEEEEECC
Q 036712 893 FARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEG-KDCYLFKISEEVVIDATNKGNIARLINHSCMPNCYARIMSVGD 971 (1020)
Q Consensus 893 fA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~~-~~~Y~f~i~~~~vIDa~~~GNiaRfINHSC~PN~~~~~v~v~~ 971 (1020)
+|.++|.+| +|+++...+...+...-.... ...|+..+..+..||+...||+.||+||||+||+....+.+.+
T Consensus 319 ~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~ 392 (463)
T KOG1081|consen 319 TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKDRIIDAGPKGNYSRFLNHSCQPNVETEKWQVIG 392 (463)
T ss_pred hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhcccccccccccchhhhhcccCCCceeechhheec
Confidence 788888888 788887776666555433332 2445555555559999999999999999999999998888765
Q ss_pred CeeEEEEEEccCCCCCCeEEEecCCCCCCCCCCCeeeecCCcCcccccC
Q 036712 972 CESRIVLIAKTNVSAGDELTYDYLFDPDEHDELKVPCLCKAPNCRMFMN 1020 (1020)
Q Consensus 972 ~~~ri~l~A~RdI~~GEELT~DY~~~~~~~~~~~~~C~CGs~~CRg~ln 1020 (1020)
..++.++|.+.|+.|||||++|++.-.. ....|.|++.+|.++++
T Consensus 393 -~t~~~~~a~~~i~~g~e~t~~~n~~~~~---~~~~~~~~~e~~~~~~~ 437 (463)
T KOG1081|consen 393 -DTRVGLFAPRQIEAGEELTFNYNGNCEG---NEKRCCCGSENCTETKG 437 (463)
T ss_pred -ccccccccccccccchhhhheeeccccC---CcceEeecccccccCCc
Confidence 6899999999999999999999886432 24679999999998764
No 36
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=98.50 E-value=1.9e-08 Score=77.54 Aligned_cols=35 Identities=49% Similarity=1.257 Sum_probs=21.9
Q ss_pred CcEEEcCCCCchhcCcccCCcccCCCCceeeccCC
Q 036712 607 NKIIICNRCQIAVHQECYGVTDVQDFTSWVCRACE 641 (1020)
Q Consensus 607 n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W~C~~C~ 641 (1020)
|+|+.|++|.+.||+.|||+..+++...|+|++|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 78999999999999999999999996689999985
No 37
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.45 E-value=2.9e-08 Score=116.86 Aligned_cols=92 Identities=28% Similarity=0.665 Sum_probs=78.5
Q ss_pred cccccCccccCCCCCcCCCCccccccccccCcccchhhHhhhcCcCccccccccccCCCCCCceecCCCCcEEcCccccc
Q 036712 361 NACYKVARVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEI 440 (1020)
Q Consensus 361 ~~~~~~~~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~ 440 (1020)
++.++-+.+|.+|+.++||-.-+| ...++.|..|.- +.|||+|.++|.+++...|++|+.|.+|+|+.|+++
T Consensus 109 ~~~ckk~~~c~qc~~~lpg~s~~~----~~~~~~~~~c~s----~~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 109 PWLCKKCTRCRQCDSTLPGLSLDL----QEGYLQCAPCAS----LSYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred ccccHHHHhhhhccccccccchhh----hccCcccccccc----cccCchHHHhhhhccchhhHHHHHhcccccCCCCcc
Confidence 456899999999999999954222 226899999997 789999999999999999999999999999999999
Q ss_pred chhhhcccC-CCceeCCCcCc
Q 036712 441 SGKHFKDLE-HIDYYCPNCRV 460 (1020)
Q Consensus 441 ~~~~~~~l~-~~~Y~Cp~C~~ 460 (1020)
+++.+.... +..|.|..||.
T Consensus 181 sdd~~~q~~vD~~~~CS~CR~ 201 (694)
T KOG4443|consen 181 SDDKYMQAQVDLQYKCSTCRG 201 (694)
T ss_pred chHHHHHHhhhhhcccceeeh
Confidence 998555442 46799999993
No 38
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.83 E-value=6.2e-06 Score=88.79 Aligned_cols=44 Identities=27% Similarity=0.765 Sum_probs=38.3
Q ss_pred ccccccCccCCCCcEEEcCCCCchhcCcccCCcccCCCCceeec-cCC
Q 036712 595 CAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCR-ACE 641 (1020)
Q Consensus 595 C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W~C~-~C~ 641 (1020)
|.||+.... .+++++||.|++.+|..|.|+..+|. |.|.|+ .|.
T Consensus 317 C~IC~~P~~--E~E~~FCD~CDRG~HT~CVGL~~lP~-G~WICD~~C~ 361 (381)
T KOG1512|consen 317 CRICLGPVI--ESEHLFCDVCDRGPHTLCVGLQDLPR-GEWICDMRCR 361 (381)
T ss_pred hhccCCccc--chheeccccccCCCCccccccccccC-ccchhhhHHH
Confidence 778887654 46899999999999999999999999 999999 353
No 40
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.42 E-value=0.00014 Score=84.85 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=96.2
Q ss_pred CCCcccccccccCccCCCCcEEEcCCCCchhcCcccCCcccCCCCceeeccCCCCCcccccCcCCcccCCCcEEEEEecc
Q 036712 589 KWTTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCRACEMPNAERKWGALKPTDVQTLWVHVTCAW 668 (1020)
Q Consensus 589 ~~~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W~C~~C~~~~~~~~gGaLk~t~i~~~WvHv~CAl 668 (1020)
......|.||........++++.|++|...+|+.|........ +.|.+..|.......+||++|.+.. +|
T Consensus 80 ~~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~-~~~~~~~c~~~~~~~~g~a~K~g~~----a~----- 149 (464)
T KOG4323|consen 80 PSSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSL-DIGESTECVFPIFSQEGGALKKGRL----AR----- 149 (464)
T ss_pred CccccCCcccccccccCchhhhhhhhhccCcccccCccCcCcC-Ccccccccccccccccccccccccc----cc-----
Confidence 3345679999988888889999999999999999975554444 7899999999999999999997753 33
Q ss_pred ccCcccccCCCCccccccccccCccccccccccccCC----CceeeecCCccccccccccccCCeEEEEeeecccccccc
Q 036712 669 FRPEIGFLNHEKMEPATGILRIPTNLFLKSCIICKQT----HGSCTQCCKCATYFHAMCASRAGYCMEIHSLERYGKQIT 744 (1020)
Q Consensus 669 w~pev~~~d~~~~~pv~~i~~i~~~~~~~~C~iC~~~----~Ga~IqC~~C~~~FHv~CAr~aGl~~e~~~~~~~g~~~~ 744 (1020)
|-+.+..... .--........|++|... .--+|||+.|.++||-.|.+..-=-+++ ++ .
T Consensus 150 --~~l~y~~~~l-------~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~------~D--~ 212 (464)
T KOG4323|consen 150 --PSLPYPEASL-------DWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELA------GD--P 212 (464)
T ss_pred --ccccCccccc-------ccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhc------cC--c
Confidence 2222221110 000011112449999842 2378999999999999998765443332 11 3
Q ss_pred ceEEecccccC
Q 036712 745 RKLIYCAVHRT 755 (1020)
Q Consensus 745 ~~~~yC~~H~~ 755 (1020)
.+..||..-..
T Consensus 213 ~~~w~C~~C~~ 223 (464)
T KOG4323|consen 213 FYEWFCDVCNR 223 (464)
T ss_pred cceEeehhhcc
Confidence 46778887664
No 41
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.41 E-value=5.3e-05 Score=81.43 Aligned_cols=45 Identities=27% Similarity=0.813 Sum_probs=36.9
Q ss_pred ccccccCccCCCCcEEEcCCCCchhcCcccC--CcccCCCCceeeccCCC
Q 036712 595 CAICRWVEDWDYNKIIICNRCQIAVHQECYG--VTDVQDFTSWVCRACEM 642 (1020)
Q Consensus 595 C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYg--v~~~p~~~~W~C~~C~~ 642 (1020)
|.||+-.+ ++++|++||.|++.+|++|.. ....|+ |.|.|..|..
T Consensus 284 csicgtse--nddqllfcddcdrgyhmyclsppm~eppe-gswsc~KOG~ 330 (336)
T KOG1244|consen 284 CSICGTSE--NDDQLLFCDDCDRGYHMYCLSPPMVEPPE-GSWSCHLCLE 330 (336)
T ss_pred eccccCcC--CCceeEeecccCCceeeEecCCCcCCCCC-CchhHHHHHH
Confidence 77888654 568999999999999999994 345566 9999999964
No 42
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=97.41 E-value=0.00012 Score=84.98 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=81.0
Q ss_pred cccEEEEecCC--CccEEEEccccCCCCEEEEEeeEEEehhHHhHHHHHhhhcCCceEEEEe---C-CeEEEecc--cCC
Q 036712 877 KHRVCFGKSGI--HGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREKQYRKEGKDCYLFKI---S-EEVVIDAT--NKG 948 (1020)
Q Consensus 877 ~~~l~v~~s~~--kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~~y~~~~~~~Y~f~i---~-~~~vIDa~--~~G 948 (1020)
...|.|..|.+ .|.||++...|.+|+--+-|.|+++.... .......|++.| + .-++||++ ...
T Consensus 27 P~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~--------~~~~n~~y~W~I~~~d~~~~~iDg~d~~~s 98 (396)
T KOG2461|consen 27 PPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASID--------SKSANNRYMWEIFSSDNGYEYIDGTDEEHS 98 (396)
T ss_pred CCceEeeccccCCccccccccccccCcccccCccCccccccc--------cccccCcceEEEEeCCCceEEeccCChhhc
Confidence 35677777765 57899999999999999999999721110 112234466666 2 34889997 469
Q ss_pred CcccccCCCCCC---CeeEEEEEECCCeeEEEEEEccCCCCCCeEEEecCCCC
Q 036712 949 NIARLINHSCMP---NCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDP 998 (1020)
Q Consensus 949 NiaRfINHSC~P---N~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~~~ 998 (1020)
|+.||||=.++. |..+. .. ...|.+.|+|+|.+||||.++|+.++
T Consensus 99 NWmRYV~~Ar~~eeQNL~A~--Q~---~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 99 NWMRYVNSARSEEEQNLLAF--QI---GENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred ceeeeecccCChhhhhHHHH--hc---cCceEEEecccCCCCCeEEEEeccch
Confidence 999999988765 76543 22 24799999999999999999998764
No 43
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.40 E-value=0.00019 Score=85.36 Aligned_cols=48 Identities=29% Similarity=0.790 Sum_probs=40.3
Q ss_pred cccccccccCccCCCCcEEEcCCCCchhcCcccCC----cccCCCCceeeccCCC
Q 036712 592 TERCAICRWVEDWDYNKIIICNRCQIAVHQECYGV----TDVQDFTSWVCRACEM 642 (1020)
Q Consensus 592 d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv----~~~p~~~~W~C~~C~~ 642 (1020)
.+.|+.|+..+.. +.+++||+|+..||+.|.-. ..+|. +.|+|..|..
T Consensus 253 ~~fCsaCn~~~~F--~~~i~CD~Cp~sFH~~CLePPl~~eniP~-g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLF--NDIICCDGCPRSFHQTCLEPPLEPENIPP-GSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCcccc--ccceeecCCchHHHHhhcCCCCCcccCCC-CccccCCCee
Confidence 4589999987654 78899999999999999933 35677 8999999975
No 44
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.24 E-value=0.00013 Score=81.30 Aligned_cols=39 Identities=31% Similarity=0.888 Sum_probs=33.3
Q ss_pred CCCCCceecCC--CC-cEEcCcccccchhhhcccCCCceeCCCcCcc
Q 036712 418 SDSGNWVCCDG--CN-VWVHAECDEISGKHFKDLEHIDYYCPNCRVK 461 (1020)
Q Consensus 418 ~d~~~wv~Cd~--C~-~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~ 461 (1020)
...++||.||+ |. .|||..|+||... +...++||.|+..
T Consensus 227 vsyg~Mi~CDn~~C~~eWFH~~CVGL~~~-----PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 227 VSYGKMIGCDNPGCPIEWFHFTCVGLKTK-----PKGKWYCPRCKAE 268 (274)
T ss_pred cccccccccCCCCCCcceEEEeccccccC-----CCCcccchhhhhh
Confidence 45789999998 99 9999999999853 4566999999964
No 45
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.08 E-value=0.00023 Score=58.76 Aligned_cols=45 Identities=31% Similarity=0.784 Sum_probs=37.2
Q ss_pred cccccccCccCCCCcEEEcCCCCchhcCcccCCccc----CCCCceeeccCC
Q 036712 594 RCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDV----QDFTSWVCRACE 641 (1020)
Q Consensus 594 ~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~----p~~~~W~C~~C~ 641 (1020)
.|.||+. ..+.+.+|.|+.|+..||..|+++... +. +.|+|+.|.
T Consensus 1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~-~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPS-GDWYCPNCR 49 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHS-SSBSSHHHH
T ss_pred eCcCCCC--cCCCCCeEEcCCCChhhCcccCCCChhhccCCC-CcEECcCCc
Confidence 4889998 345689999999999999999988854 23 489999885
No 47
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.79 E-value=0.0008 Score=72.39 Aligned_cols=42 Identities=33% Similarity=0.986 Sum_probs=34.9
Q ss_pred cccccccCCCCCCceecC--CCCc-EEcCcccccchhhhcccCCCceeCCCcCc
Q 036712 410 ICKNIWHHSDSGNWVCCD--GCNV-WVHAECDEISGKHFKDLEHIDYYCPNCRV 460 (1020)
Q Consensus 410 iC~k~y~~~d~~~wv~Cd--~C~~-WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~ 460 (1020)
+|+++ ..+.||.|| .|++ |||..|+||.. .+...|+||.|+.
T Consensus 225 fCqqv----SyGqMVaCDn~nCkrEWFH~~CVGLk~-----pPKG~WYC~eCk~ 269 (271)
T COG5034 225 FCQQV----SYGQMVACDNANCKREWFHLECVGLKE-----PPKGKWYCPECKK 269 (271)
T ss_pred Eeccc----ccccceecCCCCCchhheeccccccCC-----CCCCcEeCHHhHh
Confidence 78874 247899999 5875 99999999875 6778899999985
No 48
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=96.21 E-value=0.0021 Score=76.54 Aligned_cols=58 Identities=38% Similarity=0.822 Sum_probs=46.2
Q ss_pred cccCCCCCCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccc
Q 036712 215 DVYKPEDFALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPF 290 (1020)
Q Consensus 215 ~~~~~~~~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py 290 (1020)
.++. .+.+||+||-|+| .|+|||..|+.+. ..| +...+. .|+||| . |+|++..++++|
T Consensus 131 ~~~~--~~~~~~~vw~~vg-~~~~~~c~vc~~~-~~~---~~~~~~---~~~f~~------~--~~~~~~~~~~~~ 188 (463)
T KOG1081|consen 131 RAFK--KREVGDLVWSKVG-EYPWWPCMVCHDP-LLP---KGMKHD---HVNFFG------C--YAWTHEKRVFPY 188 (463)
T ss_pred eeec--cccceeEEeEEcC-cccccccceecCc-ccc---hhhccc---cceecc------c--hhhHHHhhhhhc
Confidence 4555 8999999999999 7999999898865 444 111111 799999 4 999999999999
No 49
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=96.06 E-value=0.0039 Score=72.46 Aligned_cols=61 Identities=23% Similarity=0.811 Sum_probs=44.9
Q ss_pred CcccchhhHhhhcCcCccccccccccCC-CCCCceecCCCCcEEcCcccccchhhhcc---------cCCCceeCCCcCc
Q 036712 391 TQFLCKHCSKLQKSEQYCGICKNIWHHS-DSGNWVCCDGCNVWVHAECDEISGKHFKD---------LEHIDYYCPNCRV 460 (1020)
Q Consensus 391 ~~~lC~~C~~l~~~g~~C~iC~k~y~~~-d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~---------l~~~~Y~Cp~C~~ 460 (1020)
...+|..|. |.||.| |..+ +.-.||.||.|.+|.|.+|- |....+.. .-+..|+|..|..
T Consensus 122 ~~gFC~~C~--------C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCA-Lr~~~i~~G~s~~g~~g~~d~~f~C~~C~~ 191 (446)
T PF07227_consen 122 EPGFCRRCM--------CCICSK-FDDNKNTCSWIGCDVCGHWCHLDCA-LRHELIGTGPSVKGSIGTLDMQFHCRACGK 191 (446)
T ss_pred CCCccccCC--------ccccCC-cccCCCCeeEEeccCCCceehhhhh-cccccccCCccCCCCCccCceEEEccCCCC
Confidence 467898884 999998 6444 47889999999999999994 43332211 1255699999995
Q ss_pred c
Q 036712 461 K 461 (1020)
Q Consensus 461 ~ 461 (1020)
.
T Consensus 192 ~ 192 (446)
T PF07227_consen 192 T 192 (446)
T ss_pred h
Confidence 4
No 50
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=96.01 E-value=0.0031 Score=45.20 Aligned_cols=16 Identities=69% Similarity=1.495 Sum_probs=14.5
Q ss_pred CeeeecCCcCcccccC
Q 036712 1005 KVPCLCKAPNCRMFMN 1020 (1020)
Q Consensus 1005 ~~~C~CGs~~CRg~ln 1020 (1020)
.++|+||+++|||+||
T Consensus 2 ~~~C~CGs~~CRG~l~ 17 (26)
T smart00508 2 KQPCLCGAPNCRGFLG 17 (26)
T ss_pred CeeeeCCCccccceec
Confidence 4789999999999995
No 51
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.91 E-value=0.0037 Score=73.21 Aligned_cols=53 Identities=23% Similarity=0.578 Sum_probs=41.9
Q ss_pred CcccccccccCccCCCCcEEEcCCCCchhcCcccCCcccC-----CCCceeeccCCCC
Q 036712 591 TTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQ-----DFTSWVCRACEMP 643 (1020)
Q Consensus 591 ~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p-----~~~~W~C~~C~~~ 643 (1020)
.+..|+||..+.....|.||+|++|...||+.|+--...+ -+..|+|..|...
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 3456999998888888899999999999999999333211 2267999999863
No 52
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=95.51 E-value=0.0035 Score=72.75 Aligned_cols=83 Identities=20% Similarity=0.393 Sum_probs=64.7
Q ss_pred CCcEEEEEeccccCcccccCCCCccccccccccCccccccccccccCCCceeeecC--CccccccccccccCCeEEEEee
Q 036712 658 QTLWVHVTCAWFRPEIGFLNHEKMEPATGILRIPTNLFLKSCIICKQTHGSCTQCC--KCATYFHAMCASRAGYCMEIHS 735 (1020)
Q Consensus 658 ~~~WvHv~CAlw~pev~~~d~~~~~pv~~i~~i~~~~~~~~C~iC~~~~Ga~IqC~--~C~~~FHv~CAr~aGl~~e~~~ 735 (1020)
...|.|..|++|.|.+.+.....+.++. ..+. ....+.|..|.++ |+.+.|. .|...+|++|++.......-
T Consensus 237 ~~~~~h~~c~~~~~~~~~~q~~~l~~~~--~~v~-r~~~~~c~~c~k~-ga~~~c~~~~~~~~~h~~c~~~~~~~~~~-- 310 (375)
T KOG1084|consen 237 FELWYHRYCALWAPNVHESQGGQLTNVD--NAVI-RFPSLQCILCQKP-GATLKCVQASLLSNAHFPCARAKNGIPLD-- 310 (375)
T ss_pred hhHHHHHHHHhcCCcceeccCccccCch--hhhh-cccchhcccccCC-CCchhhhhhhhhcccCcccccCcccccch--
Confidence 5789999999999999999998887755 2222 2233899999988 7778785 59999999999887764331
Q ss_pred eccccccccceEEeccccc
Q 036712 736 LERYGKQITRKLIYCAVHR 754 (1020)
Q Consensus 736 ~~~~g~~~~~~~~yC~~H~ 754 (1020)
-...++|++|+
T Consensus 311 --------~~r~v~~~~h~ 321 (375)
T KOG1084|consen 311 --------YDRKVSCPRHR 321 (375)
T ss_pred --------hhhhccCCCCC
Confidence 24578999999
No 53
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=95.02 E-value=0.022 Score=58.27 Aligned_cols=49 Identities=22% Similarity=0.623 Sum_probs=38.1
Q ss_pred ccccccc-CccCCCCcEEEcCCCCchhcCcccCCcccCC---------CCceeeccCCC
Q 036712 594 RCAICRW-VEDWDYNKIIICNRCQIAVHQECYGVTDVQD---------FTSWVCRACEM 642 (1020)
Q Consensus 594 ~C~VC~~-~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~---------~~~W~C~~C~~ 642 (1020)
.|.+|+. +++.+.++||+|.+|..+||+.|.|.....+ .--..|++|.-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig 59 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG 59 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC
Confidence 4899976 5666788999999999999999998765322 12377999974
No 54
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.73 E-value=0.028 Score=68.42 Aligned_cols=50 Identities=20% Similarity=0.687 Sum_probs=41.3
Q ss_pred cccccccccCccCCCCcEEEcCCCCch-hcCcccCC--cccCCCCceeeccCCCCC
Q 036712 592 TERCAICRWVEDWDYNKIIICNRCQIA-VHQECYGV--TDVQDFTSWVCRACEMPN 644 (1020)
Q Consensus 592 d~~C~VC~~~e~~~~n~Ll~Cd~C~~~-vH~~CYgv--~~~p~~~~W~C~~C~~~~ 644 (1020)
.-.|.||...+. .+.||+||.|+.. +|.+|+.. .++|. +.|+|+-|....
T Consensus 215 ~~~C~IC~~~Dp--EdVLLLCDsCN~~~YH~YCLDPdl~eiP~-~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 215 EVKCDICTVHDP--EDVLLLCDSCNKVYYHVYCLDPDLSESPV-NEWYCTNCSLLE 267 (1134)
T ss_pred cccceeeccCCh--HHhheeecccccceeeccccCcccccccc-cceecCcchhhh
Confidence 356999998765 4689999999999 99999944 45777 999999998654
No 55
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=93.40 E-value=0.036 Score=66.84 Aligned_cols=51 Identities=25% Similarity=0.658 Sum_probs=37.9
Q ss_pred ccccccccCccCCCCcEEEcCCCCchhcCccc--CCcccCCCCceeeccCCCCCcc
Q 036712 593 ERCAICRWVEDWDYNKIIICNRCQIAVHQECY--GVTDVQDFTSWVCRACEMPNAE 646 (1020)
Q Consensus 593 ~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CY--gv~~~p~~~~W~C~~C~~~~~~ 646 (1020)
..|..|+-. .+...+++|+.|+++||-+|. ....++. +.|+|+.|......
T Consensus 69 rvCe~c~~~--gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~s-g~~~ckk~~~c~qc 121 (694)
T KOG4443|consen 69 RVCEACGTT--GDPKKFLLCKRCDVSYHCYCQKPPNDKVPS-GPWLCKKCTRCRQC 121 (694)
T ss_pred eeeeecccc--CCcccccccccccccccccccCCccccccC-cccccHHHHhhhhc
Confidence 445555533 356789999999999998887 3445677 99999999765443
No 56
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=93.13 E-value=0.016 Score=46.41 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=30.8
Q ss_pred ccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcC
Q 036712 407 YCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCR 459 (1020)
Q Consensus 407 ~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~ 459 (1020)
-|+||...+.+ +..++... |.+.||.+|...-- ...+.||.||
T Consensus 2 ~C~IC~~~~~~--~~~~~~l~-C~H~fh~~Ci~~~~-------~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED--GEKVVKLP-CGHVFHRSCIKEWL-------KRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT--TSCEEEET-TSEEEEHHHHHHHH-------HHSSB-TTTH
T ss_pred CCcCCChhhcC--CCeEEEcc-CCCeeCHHHHHHHH-------HhCCcCCccC
Confidence 59999988866 45677777 99999999953221 2236999996
No 57
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=92.95 E-value=0.042 Score=61.46 Aligned_cols=38 Identities=29% Similarity=0.767 Sum_probs=34.5
Q ss_pred CCCcEEEcCC--CC-chhcCcccCCcccCCCCceeeccCCCC
Q 036712 605 DYNKIIICNR--CQ-IAVHQECYGVTDVQDFTSWVCRACEMP 643 (1020)
Q Consensus 605 ~~n~Ll~Cd~--C~-~~vH~~CYgv~~~p~~~~W~C~~C~~~ 643 (1020)
..+.|+-||. |+ -.||..|.|+...|. +.|+|+.|...
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CVGL~~~Pk-gkWyC~~C~~~ 268 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCVGLKTKPK-GKWYCPRCKAE 268 (274)
T ss_pred ccccccccCCCCCCcceEEEeccccccCCC-Ccccchhhhhh
Confidence 4589999998 99 999999999999999 88999999753
No 58
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=92.55 E-value=0.02 Score=44.47 Aligned_cols=35 Identities=34% Similarity=0.749 Sum_probs=18.9
Q ss_pred CCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcC
Q 036712 421 GNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCR 459 (1020)
Q Consensus 421 ~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~ 459 (1020)
..+|+|++|+..||..|-++... ....+|+|-.|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~----~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEV----PDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS------SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccC----CCCCcEECCcCC
Confidence 36899999999999999998874 222348887764
No 59
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=92.10 E-value=0.14 Score=65.92 Aligned_cols=56 Identities=32% Similarity=0.640 Sum_probs=43.9
Q ss_pred hhhcCcCccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCcc
Q 036712 400 KLQKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVK 461 (1020)
Q Consensus 400 ~l~~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~ 461 (1020)
.+++....|.||.+ |.-......|.||+|+.-||.+|.++. .++...++|-.|--.
T Consensus 214 ~~~~~D~~C~iC~~-~~~~n~n~ivfCD~Cnl~VHq~Cygi~-----~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLD-GECQNSNVIVFCDGCNLAVHQECYGIP-----FIPEGQWLCRRCLQS 269 (1051)
T ss_pred cccCCCccceeecc-cccCCCceEEEcCCCcchhhhhccCCC-----CCCCCcEeehhhccC
Confidence 56677889999986 111124689999999999999999844 467889999999843
No 60
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=89.37 E-value=0.25 Score=60.78 Aligned_cols=56 Identities=25% Similarity=0.243 Sum_probs=50.4
Q ss_pred HHHHHhhccCcccEEEEecCCCccEEEEccccCCCCEEEEEeeEEEehhHHhHHHH
Q 036712 867 ERLYHLQRTEKHRVCFGKSGIHGWGLFARRHIQEGEMVVEYRGEQVTQSIADLREK 922 (1020)
Q Consensus 867 ~r~~~~q~~~~~~l~v~~s~~kG~GVfA~~~I~~Gt~I~EY~Geii~~~~~~~re~ 922 (1020)
|-+|.+|.+...+|.+.++..+|||++...+|..|+||+-|.|.++....++..+.
T Consensus 788 C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks~~ 843 (1262)
T KOG1141|consen 788 CLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQISDKSEY 843 (1262)
T ss_pred HHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhhhchhhhh
Confidence 55677999999999999999999999999999999999999999998887776643
No 61
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=87.52 E-value=0.25 Score=54.21 Aligned_cols=82 Identities=22% Similarity=0.460 Sum_probs=54.8
Q ss_pred ccCccccCCCCCcCCCCc-c---ccccccccCcccchhhHhhhcCcCccccccccccCCCCCCceecCCCCcEEcCcccc
Q 036712 364 YKVARVCDGCGLFRPCKL-K---RMKGLVSETQFLCKHCSKLQKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDE 439 (1020)
Q Consensus 364 ~~~~~~C~~Cg~~~p~k~-~---~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~ 439 (1020)
..+.+.|.-|-.+-+... . .......--.+-|-.|- .|-||++- .-..+||.||.|++=+|.=|+|
T Consensus 276 ~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~-------lC~IC~~P---~~E~E~~FCD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 276 RNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE-------LCRICLGP---VIESEHLFCDVCDRGPHTLCVG 345 (381)
T ss_pred hccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH-------hhhccCCc---ccchheeccccccCCCCccccc
Confidence 357788888876643332 1 11111111234476665 48899873 3456899999999999999998
Q ss_pred cchhhhcccCCCceeCC-CcCc
Q 036712 440 ISGKHFKDLEHIDYYCP-NCRV 460 (1020)
Q Consensus 440 ~~~~~~~~l~~~~Y~Cp-~C~~ 460 (1020)
+.. |+...|.|- .|+.
T Consensus 346 L~~-----lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 346 LQD-----LPRGEWICDMRCRE 362 (381)
T ss_pred ccc-----ccCccchhhhHHHH
Confidence 765 888899997 4654
No 62
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=87.30 E-value=0.28 Score=43.15 Aligned_cols=37 Identities=32% Similarity=0.824 Sum_probs=23.1
Q ss_pred CCceecC-CCCcEEcCcccccchhhhccc--CCCceeCCC
Q 036712 421 GNWVCCD-GCNVWVHAECDEISGKHFKDL--EHIDYYCPN 457 (1020)
Q Consensus 421 ~~wv~Cd-~C~~WvH~~C~~~~~~~~~~l--~~~~Y~Cp~ 457 (1020)
--||-|. +=.+|||+.|..+++.++..| ++..|+|..
T Consensus 28 PAMI~cs~~~GHWvhaqCm~LsE~~L~~LSq~n~KYfC~d 67 (78)
T PF13341_consen 28 PAMIFCSRGGGHWVHAQCMDLSETMLIQLSQENTKYFCND 67 (78)
T ss_dssp --EEEE-STT-EEEETGGGT--HHHHHHHHHSSS-B--TT
T ss_pred ceEEEEeCCCceEeEeecccchHHHHHHHccCCceEEEhh
Confidence 3488887 567999999999999877666 588899964
No 63
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=85.35 E-value=0.49 Score=51.58 Aligned_cols=42 Identities=29% Similarity=0.895 Sum_probs=35.5
Q ss_pred ccccCccCCCCcEEEcCC--CCc-hhcCcccCCcccCCCCceeeccCCC
Q 036712 597 ICRWVEDWDYNKIIICNR--CQI-AVHQECYGVTDVQDFTSWVCRACEM 642 (1020)
Q Consensus 597 VC~~~e~~~~n~Ll~Cd~--C~~-~vH~~CYgv~~~p~~~~W~C~~C~~ 642 (1020)
-|..+ ..++|+-||+ |.+ .||..|.|+...|. |.|+|+.|+.
T Consensus 225 fCqqv---SyGqMVaCDn~nCkrEWFH~~CVGLk~pPK-G~WYC~eCk~ 269 (271)
T COG5034 225 FCQQV---SYGQMVACDNANCKREWFHLECVGLKEPPK-GKWYCPECKK 269 (271)
T ss_pred Eeccc---ccccceecCCCCCchhheeccccccCCCCC-CcEeCHHhHh
Confidence 56655 4689999996 665 68999999999999 9999999974
No 64
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=83.84 E-value=0.49 Score=51.86 Aligned_cols=51 Identities=20% Similarity=0.474 Sum_probs=33.9
Q ss_pred CcccccccccCccC-----CCCcEEEcCCCCchhcCcccCCccc----CCCCceeeccCC
Q 036712 591 TTERCAICRWVEDW-----DYNKIIICNRCQIAVHQECYGVTDV----QDFTSWVCRACE 641 (1020)
Q Consensus 591 ~d~~C~VC~~~e~~-----~~n~Ll~Cd~C~~~vH~~CYgv~~~----p~~~~W~C~~C~ 641 (1020)
....|..|.....+ -..+|+.|..|++.=|.+|.-.... .....|.|..|+
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck 282 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK 282 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc
Confidence 34569999875422 2348999999999999999843321 122456666664
No 65
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=83.62 E-value=0.63 Score=57.95 Aligned_cols=49 Identities=24% Similarity=0.675 Sum_probs=38.9
Q ss_pred CcccccccccCccCCCCcEEEcCCCCchhcCcccCCc--ccCCCCceeeccCCCCCc
Q 036712 591 TTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVT--DVQDFTSWVCRACEMPNA 645 (1020)
Q Consensus 591 ~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~--~~p~~~~W~C~~C~~~~~ 645 (1020)
+.+.|.||.++ +.++.|+.|...||.+|.+.. .+|..+ |.|++|..+..
T Consensus 46 ~~e~c~ic~~~-----g~~l~c~tC~~s~h~~cl~~pl~~~p~~~-~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 46 EQEACRICADG-----GELLWCDTCPASFHASCLGPPLTPQPNGE-FICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhcCC-----CcEEEeccccHHHHHHccCCCCCcCCccc-eeeeeeccCCC
Confidence 34679999986 579999999999999999655 455545 99999965443
No 66
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=82.37 E-value=0.53 Score=57.69 Aligned_cols=51 Identities=25% Similarity=0.704 Sum_probs=40.2
Q ss_pred CcCccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCc
Q 036712 404 SEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRV 460 (1020)
Q Consensus 404 ~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~ 460 (1020)
..-.|.+|.- -..++..+||.||.|+.=||..|-||.. ++...|.|..|.-
T Consensus 270 edviCDvCrs-pD~e~~neMVfCd~Cn~cVHqaCyGIle-----~p~gpWlCr~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRS-PDSEEANEMVFCDKCNICVHQACYGILE-----VPEGPWLCRTCAL 320 (893)
T ss_pred ccceeceecC-CCccccceeEEeccchhHHHHhhhceee-----cCCCCeeehhccc
Confidence 5667777753 1112378999999999999999998875 6778899999983
No 67
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=81.41 E-value=0.19 Score=58.08 Aligned_cols=64 Identities=25% Similarity=0.579 Sum_probs=47.3
Q ss_pred cchhhHhhhcCcCccccccccccCCCCCCceecCCCCcEEcCcccccchh--hhcccCCCceeCCCcCc
Q 036712 394 LCKHCSKLQKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGK--HFKDLEHIDYYCPNCRV 460 (1020)
Q Consensus 394 lC~~C~~l~~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~--~~~~l~~~~Y~Cp~C~~ 460 (1020)
+|..++.-+ .+.+|..|+-.+..+ ..||+|+-|..|+|+.|..+... .+..+.+..|+||.|..
T Consensus 229 ~~~~~~~~~-~~~~~~~cg~~~~~~--~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~ 294 (345)
T KOG1632|consen 229 VDESEAPDY-SKLICDPCGLSDANK--KFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTV 294 (345)
T ss_pred CCccccccc-ccccccccCcchHHH--HHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceee
Confidence 455555433 367788888766655 89999999999999999998776 22223345599999996
No 68
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.40 E-value=0.63 Score=56.46 Aligned_cols=53 Identities=26% Similarity=0.743 Sum_probs=39.2
Q ss_pred ccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCcccc
Q 036712 407 YCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVKFK 463 (1020)
Q Consensus 407 ~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~~~ 463 (1020)
||-.|++.=.- .+.|+||+|..-||..|..-..+ .+.++...++||.|.-+..
T Consensus 255 fCsaCn~~~~F---~~~i~CD~Cp~sFH~~CLePPl~-~eniP~g~W~C~ec~~k~~ 307 (613)
T KOG4299|consen 255 FCSACNGSGLF---NDIICCDGCPRSFHQTCLEPPLE-PENIPPGSWFCPECKIKSV 307 (613)
T ss_pred HHHHhCCcccc---ccceeecCCchHHHHhhcCCCCC-cccCCCCccccCCCeeeee
Confidence 66666542111 34699999999999999986633 5578888999999996543
No 69
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=79.61 E-value=0.87 Score=52.69 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=36.3
Q ss_pred cccccccCCCCCCceecCCCCcEEcCcc--cccchhhhcccCCCceeCCCcCccc
Q 036712 410 ICKNIWHHSDSGNWVCCDGCNVWVHAEC--DEISGKHFKDLEHIDYYCPNCRVKF 462 (1020)
Q Consensus 410 iC~k~y~~~d~~~wv~Cd~C~~WvH~~C--~~~~~~~~~~l~~~~Y~Cp~C~~~~ 462 (1020)
+|.+.+..+ ..|++|+.|..|+|.+| .+++.+.... ...|+|..|..-.
T Consensus 64 ~~~~~~~p~--~~~~~cd~C~~~~~~ec~~v~~~~~e~p~--~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 64 KCYKPCDPD--DLMEQCDLCEDWYHGECWEVGTAEKEAPK--EDPKVCDECKEAQ 114 (345)
T ss_pred hcccccCch--hhhhccccccccccccccccCchhhcCCc--cccccccccchhh
Confidence 444444333 39999999999999999 9888763333 4779999998543
No 70
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=79.26 E-value=1.3 Score=37.55 Aligned_cols=32 Identities=25% Similarity=0.778 Sum_probs=26.8
Q ss_pred cccccccccCccCCCCcEEEcCCCCchhcCccc
Q 036712 592 TERCAICRWVEDWDYNKIIICNRCQIAVHQECY 624 (1020)
Q Consensus 592 d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CY 624 (1020)
...|.+|+..-. +.+.++.|..|+..+|..||
T Consensus 5 ~~~C~~Cg~~~~-~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFK-DGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCccc-CCCCEEECCCCCCcccHHHH
Confidence 457999998542 35679999999999999999
No 71
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=78.90 E-value=3.2 Score=49.13 Aligned_cols=41 Identities=34% Similarity=0.572 Sum_probs=30.4
Q ss_pred ccCCCCCCCeeEEEEEECCCeeEEEEEEccCCCCCC-eEEEecCCCC
Q 036712 953 LINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGD-ELTYDYLFDP 998 (1020)
Q Consensus 953 fINHSC~PN~~~~~v~v~~~~~ri~l~A~RdI~~GE-ELT~DY~~~~ 998 (1020)
++||||.||+.. ..++ ....+++...+.+++ ||++.|-...
T Consensus 208 ~~~hsC~pn~~~---~~~~--~~~~~~~~~~~~~~~~~l~~~y~~~~ 249 (482)
T KOG2084|consen 208 LFNHSCFPNISV---IFDG--RGLALLVPAGIDAGEEELTISYTDPL 249 (482)
T ss_pred hcccCCCCCeEE---EECC--ceeEEEeecccCCCCCEEEEeecccc
Confidence 789999999972 3333 456677777888876 9999996544
No 72
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=77.28 E-value=1.8 Score=36.64 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=39.2
Q ss_pred CCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccc
Q 036712 222 FALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLF 288 (1020)
Q Consensus 222 ~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~ 288 (1020)
|.+|+.||++.+ .--+-+|+|++-. ..+ ..-.|.|-|.|+.. ..| .||..++|-
T Consensus 1 ~~vG~~v~~~~~-~~~~y~A~I~~~r-~~~-------~~~~YyVHY~g~nk---R~D-eWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYK-DGQWYEAKILDIR-EKN-------GEPEYYVHYQGWNK---RLD-EWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEET-TTEEEEEEEEEEE-ECT-------TCEEEEEEETTSTG---CC--EEEETTTEE
T ss_pred CCcCCEEEEEEC-CCcEEEEEEEEEE-ecC-------CCEEEEEEcCCCCC---Cce-eeecHHHcc
Confidence 679999999993 5678999998875 111 12479999999776 566 899988873
No 73
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=76.57 E-value=0.8 Score=57.05 Aligned_cols=51 Identities=27% Similarity=0.607 Sum_probs=41.7
Q ss_pred hhhcCcCccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcC
Q 036712 400 KLQKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCR 459 (1020)
Q Consensus 400 ~l~~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~ 459 (1020)
....+-++|.||. +++.-+.||.|..|||+.|.+.... +.++..+.|+.|.
T Consensus 42 ~~~~~~e~c~ic~------~~g~~l~c~tC~~s~h~~cl~~pl~---~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 42 WDDAEQEACRICA------DGGELLWCDTCPASFHASCLGPPLT---PQPNGEFICPRCF 92 (696)
T ss_pred cchhhhhhhhhhc------CCCcEEEeccccHHHHHHccCCCCC---cCCccceeeeeec
Confidence 6677788999995 6888999999999999999876543 4555569999994
No 74
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.49 E-value=1.5 Score=54.21 Aligned_cols=47 Identities=30% Similarity=0.690 Sum_probs=35.8
Q ss_pred cccccccccCCCCCCceecCCCCcE-EcCcccccchhhhcccCCCceeCCCcCc
Q 036712 408 CGICKNIWHHSDSGNWVCCDGCNVW-VHAECDEISGKHFKDLEHIDYYCPNCRV 460 (1020)
Q Consensus 408 C~iC~k~y~~~d~~~wv~Cd~C~~W-vH~~C~~~~~~~~~~l~~~~Y~Cp~C~~ 460 (1020)
|-|| |.++-..-|+-||.|++- ||.-|....- -+++-..|+|+.|.-
T Consensus 218 C~IC---~~~DpEdVLLLCDsCN~~~YH~YCLDPdl---~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 218 CDIC---TVHDPEDVLLLCDSCNKVYYHVYCLDPDL---SESPVNEWYCTNCSL 265 (1134)
T ss_pred ceee---ccCChHHhheeecccccceeeccccCccc---ccccccceecCcchh
Confidence 5566 445557889999999998 9999975432 245567899999985
No 75
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=75.33 E-value=0.68 Score=62.05 Aligned_cols=51 Identities=24% Similarity=0.600 Sum_probs=38.5
Q ss_pred ccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCcccc
Q 036712 407 YCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVKFK 463 (1020)
Q Consensus 407 ~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~~~ 463 (1020)
.|.+|.+. .+...|+-||.|..|+|.-|-..... ..+..++.||.|+..+.
T Consensus 1110 ~c~~cr~k---~~~~~m~lc~~c~~~~h~~C~rp~~~---~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1110 LCKVCRRK---KQDEKMLLCDECLSGFHLFCLRPALS---SVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhc---ccchhhhhhHhhhhhHHHHhhhhhhc---cCCcCCccCCccchhhh
Confidence 44555542 33478999999999999999875543 56677899999998763
No 76
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=74.91 E-value=8.9 Score=39.86 Aligned_cols=36 Identities=25% Similarity=0.570 Sum_probs=27.8
Q ss_pred cccccccccCCCCCCceecCCCCcEEcCcccccchh
Q 036712 408 CGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGK 443 (1020)
Q Consensus 408 C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~ 443 (1020)
|..|.-...+...+.+|-|-+|---||-.|.+..+.
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ 37 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQ 37 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCccc
Confidence 555654444555789999999999999999987554
No 77
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=72.98 E-value=2.1 Score=36.90 Aligned_cols=29 Identities=28% Similarity=0.720 Sum_probs=18.9
Q ss_pred CccccCCCCCcCCCCccccccccccCcccchhhHhh
Q 036712 366 VARVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKL 401 (1020)
Q Consensus 366 ~~~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l 401 (1020)
....|.|||..+....+ . ..+.|..|++.
T Consensus 6 ~~~~CtSCg~~i~~~~~---~----~~F~CPnCG~~ 34 (59)
T PRK14890 6 EPPKCTSCGIEIAPREK---A----VKFLCPNCGEV 34 (59)
T ss_pred cCccccCCCCcccCCCc---c----CEeeCCCCCCe
Confidence 45579999988765441 1 36777777653
No 78
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=72.63 E-value=1.4 Score=51.88 Aligned_cols=35 Identities=37% Similarity=0.726 Sum_probs=31.3
Q ss_pred CCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcC
Q 036712 420 SGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCR 459 (1020)
Q Consensus 420 ~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~ 459 (1020)
..-.|-||+|+.-||-+|-||.. ++...+.|..|-
T Consensus 207 ~naiVfCdgC~i~VHq~CYGI~f-----~peG~WlCrkCi 241 (669)
T COG5141 207 SNAIVFCDGCEICVHQSCYGIQF-----LPEGFWLCRKCI 241 (669)
T ss_pred cceEEEecCcchhhhhhccccee-----cCcchhhhhhhc
Confidence 56799999999999999999875 778889999997
No 79
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=72.29 E-value=1.8 Score=36.12 Aligned_cols=33 Identities=30% Similarity=0.807 Sum_probs=15.7
Q ss_pred CceecCCCCcEEcCcccccchhhhcccCCCceeCCC
Q 036712 422 NWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPN 457 (1020)
Q Consensus 422 ~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~ 457 (1020)
.|||||.|.+|=... .++.. ....+++ .++|..
T Consensus 2 ~WVQCd~C~KWR~lp-~~~~~-~~~~~~d-~W~C~~ 34 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP-EEVDP-IREELPD-PWYCSM 34 (50)
T ss_dssp EEEE-TTT--EEEE--CCHHC-TSCCSST-T--GGG
T ss_pred eEEECCCCCceeeCC-hhhCc-ccccCCC-eEEcCC
Confidence 599999999998766 32222 1223444 677754
No 80
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=72.28 E-value=4.5 Score=34.53 Aligned_cols=38 Identities=29% Similarity=0.346 Sum_probs=29.4
Q ss_pred CCCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEec
Q 036712 221 DFALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFG 269 (1020)
Q Consensus 221 ~~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG 269 (1020)
.|+.||+|-|+.--.--||+|+|+.-. + .+.|-|.|.+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~---~--------~~~~~V~~~~ 39 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVL---G--------DGKYLVRYLT 39 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEEC---C--------CCEEEEEECC
Confidence 689999999998223679999997543 1 3468899987
No 81
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=71.72 E-value=2.5 Score=49.90 Aligned_cols=52 Identities=25% Similarity=0.605 Sum_probs=37.5
Q ss_pred cCccccccccccCCCCCCceecCCCCcEEcCcccccchhhhc-ccCCCceeCCCcC
Q 036712 405 EQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFK-DLEHIDYYCPNCR 459 (1020)
Q Consensus 405 g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~-~l~~~~Y~Cp~C~ 459 (1020)
.-.|+||+|. .|.-..++||.|+.-+|.-|....-..+- .-.+.-|.|..|-
T Consensus 544 ~ysCgiCkks---~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 544 NYSCGICKKS---TDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ceeeeeeccc---hhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 3469999983 35567999999999999999764433111 1235669999993
No 82
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=70.97 E-value=6.1 Score=32.96 Aligned_cols=53 Identities=25% Similarity=0.213 Sum_probs=42.1
Q ss_pred CCCCCCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccch
Q 036712 221 DFALGDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFA 291 (1020)
Q Consensus 221 ~~~~gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~ 291 (1020)
.|++|++|=|+. ..=-|.+|+|++.. +. +.+.|+|.. ..+..||....|.|-.
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~---~~--------~~~~V~f~D------~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVD---GE--------QLYEVFFID------YGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEEC---CC--------CEEEEEEEC------CCccEEEeHHHeecCC
Confidence 589999999999 45679999998875 21 468899997 4556899998888754
No 83
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=69.30 E-value=3 Score=42.50 Aligned_cols=26 Identities=27% Similarity=0.825 Sum_probs=22.1
Q ss_pred hhcCccc--CCcccCCCCceeeccCCCCC
Q 036712 618 AVHQECY--GVTDVQDFTSWVCRACEMPN 644 (1020)
Q Consensus 618 ~vH~~CY--gv~~~p~~~~W~C~~C~~~~ 644 (1020)
.+|..|. .+..+|+ ++|+|+.|....
T Consensus 1 g~H~~CL~Ppl~~~P~-g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPE-GDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCC-CCcCCCCCcCCC
Confidence 3799999 6778899 999999998754
No 84
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=68.43 E-value=1.4 Score=59.25 Aligned_cols=49 Identities=24% Similarity=0.790 Sum_probs=41.0
Q ss_pred ccccccccCccCCCCcEEEcCCCCchhcCccc--CCcccCCCCceeeccCCCCC
Q 036712 593 ERCAICRWVEDWDYNKIIICNRCQIAVHQECY--GVTDVQDFTSWVCRACEMPN 644 (1020)
Q Consensus 593 ~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CY--gv~~~p~~~~W~C~~C~~~~ 644 (1020)
..|.||+.... ...++.|+.|...+|..|. .+..+|. +.|+|+.|....
T Consensus 1109 ~~c~~cr~k~~--~~~m~lc~~c~~~~h~~C~rp~~~~~~~-~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1109 ALCKVCRRKKQ--DEKMLLCDECLSGFHLFCLRPALSSVPP-GDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhccc--chhhhhhHhhhhhHHHHhhhhhhccCCc-CCccCCccchhh
Confidence 57999998653 3579999999999999999 5566777 899999998654
No 85
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=68.27 E-value=5.1 Score=48.44 Aligned_cols=76 Identities=26% Similarity=0.391 Sum_probs=38.0
Q ss_pred ccCcCCcccCCCcEEEEEeccccCcccccCCCCccccccc---cccCccccccccccccC-CCceeeecCCccccccccc
Q 036712 648 KWGALKPTDVQTLWVHVTCAWFRPEIGFLNHEKMEPATGI---LRIPTNLFLKSCIICKQ-THGSCTQCCKCATYFHAMC 723 (1020)
Q Consensus 648 ~gGaLk~t~i~~~WvHv~CAlw~pev~~~d~~~~~pv~~i---~~i~~~~~~~~C~iC~~-~~Ga~IqC~~C~~~FHv~C 723 (1020)
.|.+|... +-+| |+.|.....--.+.+.+.|.. .++ ..-..+.+..+|..|.+ ..|-.+|=.. ..||++|
T Consensus 145 ~gq~llal--d~qw-hv~cfkc~~c~~vL~gey~sk-dg~pyce~dy~~~fgvkc~~c~~fisgkvLqag~--kh~HPtC 218 (670)
T KOG1044|consen 145 NGQALLAL--DKQW-HVSCFKCKSCSAVLNGEYMSK-DGVPYCEKDYQAKFGVKCEECEKFISGKVLQAGD--KHFHPTC 218 (670)
T ss_pred ccceeeee--ccce-eeeeeehhhhcccccceeecc-CCCcchhhhhhhhcCeehHHhhhhhhhhhhhccC--cccCcch
Confidence 44555544 3456 666655544444444444432 111 11123344456777664 2344444443 7888888
Q ss_pred cccCCe
Q 036712 724 ASRAGY 729 (1020)
Q Consensus 724 Ar~aGl 729 (1020)
|+=.-+
T Consensus 219 ARCsRC 224 (670)
T KOG1044|consen 219 ARCSRC 224 (670)
T ss_pred hhhhhh
Confidence 865443
No 86
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=67.73 E-value=4.5 Score=52.20 Aligned_cols=116 Identities=19% Similarity=0.387 Sum_probs=71.7
Q ss_pred CCCCCCcccccccccCccCCCCcEEEcCCCCchhcCccc--CCcccCCCCceeeccCCCCCccc-ccCcCCcccCCCcEE
Q 036712 586 VSVKWTTERCAICRWVEDWDYNKIIICNRCQIAVHQECY--GVTDVQDFTSWVCRACEMPNAER-KWGALKPTDVQTLWV 662 (1020)
Q Consensus 586 ~~~~~~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CY--gv~~~p~~~~W~C~~C~~~~~~~-~gGaLk~t~i~~~Wv 662 (1020)
.....-++.|.+|.+. +.+++|..|++.||..|. ..-.+|. ..|-|..|....... ..+.|-+.. .|.
T Consensus 338 e~~~~~ddhcrf~~d~-----~~~lc~Et~prvvhlEcv~hP~~~~~s-~~~e~evc~~hkvngvvd~vl~~~K---~~~ 408 (1414)
T KOG1473|consen 338 EGEIEYDDHCRFCHDL-----GDLLCCETCPRVVHLECVFHPRFAVPS-AFWECEVCNIHKVNGVVDCVLPPSK---NVD 408 (1414)
T ss_pred ccceeecccccccCcc-----cceeecccCCceEEeeecCCccccCCC-ccchhhhhhhhccCcccccccChhh---ccc
Confidence 3334456889999986 679999999999999997 4445666 789999887533211 111111111 111
Q ss_pred EEEeccccCcccccCCCCccccccccccCcccc--ccccccccCCCceeeecC-Cccccccc-cccccC
Q 036712 663 HVTCAWFRPEIGFLNHEKMEPATGILRIPTNLF--LKSCIICKQTHGSCTQCC-KCATYFHA-MCASRA 727 (1020)
Q Consensus 663 Hv~CAlw~pev~~~d~~~~~pv~~i~~i~~~~~--~~~C~iC~~~~Ga~IqC~-~C~~~FHv-~CAr~a 727 (1020)
-+ .-+| .|.....+..| ..+|.||+.. +..+-|. .|.+.||. .|.=+.
T Consensus 409 ~i---------------R~~~-iG~dr~gr~ywfi~rrl~Ie~~d-et~l~yysT~pqly~ll~cLd~~ 460 (1414)
T KOG1473|consen 409 SI---------------RHTP-IGRDRYGRKYWFISRRLRIEGMD-ETLLWYYSTCPQLYHLLRCLDRT 460 (1414)
T ss_pred ce---------------eccC-CCcCccccchhceeeeeEEecCC-CcEEEEecCcHHHHHHHHHhchH
Confidence 11 1111 22333333333 3479999977 7778886 49999999 776533
No 87
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=66.76 E-value=4 Score=33.09 Aligned_cols=34 Identities=38% Similarity=0.670 Sum_probs=24.9
Q ss_pred cccCCCCCcCCCCccccccccccCcccchhhHhhh
Q 036712 368 RVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQ 402 (1020)
Q Consensus 368 ~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~ 402 (1020)
++|++||.. |-.+.++|-....++.||..|..-.
T Consensus 1 I~CDgCg~~-PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 1 IQCDGCGVL-PITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCC-cccccceEeCCCCCCccHHHHhhhh
Confidence 579999964 5444456666677899999998754
No 88
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=65.75 E-value=4 Score=34.74 Aligned_cols=37 Identities=24% Similarity=0.638 Sum_probs=31.2
Q ss_pred ccccccccCC---CceeeecCCccccccccccccCCeEEE
Q 036712 696 LKSCIICKQT---HGSCTQCCKCATYFHAMCASRAGYCME 732 (1020)
Q Consensus 696 ~~~C~iC~~~---~Ga~IqC~~C~~~FHv~CAr~aGl~~e 732 (1020)
..+|.+|+.. ++..+.|..|.+.||-.|.-..|-...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEe
Confidence 3579999964 689999999999999999988776544
No 89
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=64.38 E-value=4.2 Score=45.87 Aligned_cols=37 Identities=22% Similarity=0.698 Sum_probs=29.0
Q ss_pred CcCccccccccccCC---CCCCceecCCCCcEEc-Ccccccc
Q 036712 404 SEQYCGICKNIWHHS---DSGNWVCCDGCNVWVH-AECDEIS 441 (1020)
Q Consensus 404 ~g~~C~iC~k~y~~~---d~~~wv~Cd~C~~WvH-~~C~~~~ 441 (1020)
+|-|| +|...|.+- .++.|+||-.|..||| -.|..-+
T Consensus 127 qG~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 127 QGLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred cceeE-EecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 56676 689999882 3899999999999999 5554433
No 90
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=64.33 E-value=6.6 Score=32.49 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=28.5
Q ss_pred hcCcCccccccccccCCCCCCceecCCCCcEEcCcccccc
Q 036712 402 QKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEIS 441 (1020)
Q Consensus 402 ~~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~ 441 (1020)
+.+..+|.+|++..-. ....-+.|..|+.-+|.+|...-
T Consensus 8 ~~~~~~C~~C~~~i~g-~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 8 FSKPTYCDVCGKFIWG-LGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp SSSTEB-TTSSSBECS-SSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCCCcccCcccCC-CCCCeEEECCCCChHhhhhhhhc
Confidence 3467788888886522 56789999999999999996543
No 91
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=63.79 E-value=2.5 Score=37.98 Aligned_cols=45 Identities=22% Similarity=0.526 Sum_probs=27.2
Q ss_pred cccccccccCC-------CCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcC
Q 036712 408 CGICKNIWHHS-------DSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCR 459 (1020)
Q Consensus 408 C~iC~k~y~~~-------d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~ 459 (1020)
|+||...+.+. .+.-.|.=..|++-||..|.. .+-...-+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~-------~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS-------QWLKQNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH-------HHHTTSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH-------HHHhcCCcCCCCC
Confidence 78888777333 122344446799999999952 2212223999997
No 92
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=63.73 E-value=5.1 Score=48.38 Aligned_cols=40 Identities=33% Similarity=0.375 Sum_probs=30.2
Q ss_pred ccCCCCCCCeeEEEEEECCCeeEEEEEEccCCCCCCeEEEecCC
Q 036712 953 LINHSCMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLF 996 (1020)
Q Consensus 953 fINHSC~PN~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~ 996 (1020)
+.||++.+. .. ..+.....+.+++.++|.+||||++.||.
T Consensus 239 ~~NH~~~~~-~~---~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEVI-KA---GYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchhc-cc---cccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 569999992 11 12222348999999999999999999975
No 93
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=63.51 E-value=6.4 Score=42.27 Aligned_cols=56 Identities=25% Similarity=0.622 Sum_probs=41.3
Q ss_pred CcccchhhHhhhcCcCccccccc--cccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCcc
Q 036712 391 TQFLCKHCSKLQKSEQYCGICKN--IWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVK 461 (1020)
Q Consensus 391 ~~~lC~~C~~l~~~g~~C~iC~k--~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~ 461 (1020)
+..-|..|.. +|..|-+|.. +--+-+...-++|+.|..-+|.+|-. . =.||.|...
T Consensus 141 HV~~C~lC~~---kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-------~-----~~CpkC~R~ 198 (202)
T PF13901_consen 141 HVYSCELCQQ---KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-------K-----KSCPKCARR 198 (202)
T ss_pred HHHHhHHHHh---CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-------C-----CCCCCcHhH
Confidence 3457888876 7999999974 22222445789999999999999943 1 239999854
No 94
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=62.05 E-value=3.7 Score=36.59 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=21.3
Q ss_pred CccccccccccCCCCCCceecC--CCCcEEcCcccccchhhhc----ccCCCceeCCCcCccc
Q 036712 406 QYCGICKNIWHHSDSGNWVCCD--GCNVWVHAECDEISGKHFK----DLEHIDYYCPNCRVKF 462 (1020)
Q Consensus 406 ~~C~iC~k~y~~~d~~~wv~Cd--~C~~WvH~~C~~~~~~~~~----~l~~~~Y~Cp~C~~~~ 462 (1020)
.-|+||.....+++....+-|+ .|..-+|..|..---.... .+..+.=.||.|+...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 3599998766555566789998 9999999999742110000 1112334799999754
No 95
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=61.90 E-value=6 Score=35.27 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=19.3
Q ss_pred cccccccccCcc-CCCCcEEEcC--CCCchhcCcccC-----Cccc---CCCCceeeccCCCC
Q 036712 592 TERCAICRWVED-WDYNKIIICN--RCQIAVHQECYG-----VTDV---QDFTSWVCRACEMP 643 (1020)
Q Consensus 592 d~~C~VC~~~e~-~~~n~Ll~Cd--~C~~~vH~~CYg-----v~~~---p~~~~W~C~~C~~~ 643 (1020)
+..|.||..... .+.-..+.|+ .|...+|..|.. .... -.....-|+.|...
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 357999998754 3334578998 899999999981 1111 11134679988753
No 96
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=61.83 E-value=4.1 Score=49.39 Aligned_cols=49 Identities=24% Similarity=0.414 Sum_probs=37.4
Q ss_pred cccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCccccC
Q 036712 410 ICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVKFKF 464 (1020)
Q Consensus 410 iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~~~~ 464 (1020)
+|+.. ++.++.||||+.|..|.|.-|.++-.. .....|.|..|+.+...
T Consensus 90 ~c~~~--~~~~g~~i~c~~c~~Wqh~~C~g~~~~----~~p~~y~c~~c~~~~~~ 138 (508)
T KOG1844|consen 90 DCGLE--DDMEGLMIQCDWCGRWQHKICCGSFKS----TKPDKYVCEICTPRNKE 138 (508)
T ss_pred ccccc--cCCCceeeCCcccCcccCceeeeecCC----CCchhceeeeecccccc
Confidence 56542 222899999999999999999988764 11456999999977553
No 97
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=58.25 E-value=6.5 Score=51.79 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=17.2
Q ss_pred cccCCCcccccCC--CC-CCCeeEEEEEECC
Q 036712 944 ATNKGNIARLINH--SC-MPNCYARIMSVGD 971 (1020)
Q Consensus 944 a~~~GNiaRfINH--SC-~PN~~~~~v~v~~ 971 (1020)
++..||+-.|-.. -| .=|..+|++...|
T Consensus 1240 pDl~GNLraFsrQ~~RC~kC~~kyRR~PL~G 1270 (1337)
T PRK14714 1240 PDLIGNLRAFSRQEFRCLKCGTKYRRMPLAG 1270 (1337)
T ss_pred hhhhhhhhhhhccceeecccCcccccCCCCC
Confidence 4567888777543 35 4577777766543
No 98
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=57.93 E-value=7.5 Score=30.24 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=20.8
Q ss_pred ccccccccccCCC-----CCCceecCCCCcEEc
Q 036712 407 YCGICKNIWHHSD-----SGNWVCCDGCNVWVH 434 (1020)
Q Consensus 407 ~C~iC~k~y~~~d-----~~~wv~Cd~C~~WvH 434 (1020)
-||-|+..|.-+| .+.+|+|..|.+-++
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 4788888887664 566889998887653
No 99
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=54.15 E-value=9.3 Score=32.15 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=25.2
Q ss_pred ccccCCCCCcCCCCccccccccccCcccchhhHhhhcCc
Q 036712 367 ARVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQKSE 405 (1020)
Q Consensus 367 ~~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~~g 405 (1020)
..+|..||++....+ .....+..+||+.|+..+.+.
T Consensus 3 ~~~C~~C~~~~T~~W---R~g~~g~~~LCnaCgl~~~k~ 38 (52)
T smart00401 3 GRSCSNCGTTETPLW---RRGPSGNKTLCNACGLYYKKH 38 (52)
T ss_pred CCCcCCCCCCCCCcc---ccCCCCCCcEeecccHHHHHc
Confidence 468999998765543 222334469999999888754
No 100
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=52.96 E-value=6 Score=31.78 Aligned_cols=43 Identities=23% Similarity=0.586 Sum_probs=30.1
Q ss_pred cccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCc
Q 036712 408 CGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRV 460 (1020)
Q Consensus 408 C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~ 460 (1020)
|++|.+.|++ +...|+ ..|.|+|..+|.. .+......||.|++
T Consensus 2 C~~C~~~~~~-~~~~~l--~~CgH~~C~~C~~-------~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSE-ERRPRL--TSCGHIFCEKCLK-------KLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccC-CCCeEE--cccCCHHHHHHHH-------hhcCCCCCCcCCCC
Confidence 8899998932 334444 5789999999953 22255689999983
No 101
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=51.27 E-value=9.8 Score=29.72 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=21.6
Q ss_pred ccccccccccCCC-----CCCceecCCCCcEEc
Q 036712 407 YCGICKNIWHHSD-----SGNWVCCDGCNVWVH 434 (1020)
Q Consensus 407 ~C~iC~k~y~~~d-----~~~wv~Cd~C~~WvH 434 (1020)
-||-|+..|.-+| ++.+|.|..|++-|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 3788888887664 467999999988765
No 102
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=50.54 E-value=3.6 Score=50.41 Aligned_cols=57 Identities=25% Similarity=0.613 Sum_probs=38.9
Q ss_pred cchhhHhhhcCcCccccccc---cccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCccccC
Q 036712 394 LCKHCSKLQKSEQYCGICKN---IWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVKFKF 464 (1020)
Q Consensus 394 lC~~C~~l~~~g~~C~iC~k---~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~~~~ 464 (1020)
-|..|.. +|..|.+|+. +|-- ....-..|+.|..|+|.+|-.-.. --||.|....++
T Consensus 503 ~C~lC~~---~gfiCe~Cq~~~iiyPF-~~~~~~rC~~C~avfH~~C~~r~s----------~~CPrC~R~q~r 562 (580)
T KOG1829|consen 503 ECDLCTG---KGFICELCQHNDIIYPF-ETRNTRRCSTCLAVFHKKCLRRKS----------PCCPRCERRQKR 562 (580)
T ss_pred hchhhcc---CeeeeeeccCCCccccc-ccccceeHHHHHHHHHHHHHhccC----------CCCCchHHHHHH
Confidence 3888874 7999999943 1111 133458999999999999943222 229999866553
No 103
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=50.52 E-value=5.6 Score=29.44 Aligned_cols=28 Identities=32% Similarity=0.796 Sum_probs=11.3
Q ss_pred ccccccccccCCCCCCceecCCCCcEEcCcc
Q 036712 407 YCGICKNIWHHSDSGNWVCCDGCNVWVHAEC 437 (1020)
Q Consensus 407 ~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C 437 (1020)
.|.+|++.- ++..+-.|..|+..+|.+|
T Consensus 2 ~C~~C~~~~---~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPI---DGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS-------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcC---CCCceEECccCCCccChhc
Confidence 467777622 2247889999999999988
No 104
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=50.47 E-value=6.6 Score=30.50 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=18.5
Q ss_pred cCCCCCcCCCCccccccccccCcccchhhHhhhcC
Q 036712 370 CDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQKS 404 (1020)
Q Consensus 370 C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~~ 404 (1020)
|..||.+....+ .....+...||+.|+..+++
T Consensus 1 C~~C~tt~t~~W---R~~~~g~~~LCn~Cg~~~kk 32 (36)
T PF00320_consen 1 CSNCGTTETPQW---RRGPNGNRTLCNACGLYYKK 32 (36)
T ss_dssp -TTT--ST-SSE---EEETTSEE-EEHHHHHHHHH
T ss_pred CcCCcCCCCchh---hcCCCCCCHHHHHHHHHHHH
Confidence 788998865544 22234566799999988764
No 105
>PF12773 DZR: Double zinc ribbon
Probab=50.06 E-value=15 Score=30.14 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=6.4
Q ss_pred CccccCCCCCcCC
Q 036712 366 VARVCDGCGLFRP 378 (1020)
Q Consensus 366 ~~~~C~~Cg~~~p 378 (1020)
+...|..||..++
T Consensus 11 ~~~fC~~CG~~l~ 23 (50)
T PF12773_consen 11 DAKFCPHCGTPLP 23 (50)
T ss_pred cccCChhhcCChh
Confidence 3444555555444
No 106
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=48.00 E-value=13 Score=46.79 Aligned_cols=35 Identities=20% Similarity=0.608 Sum_probs=25.7
Q ss_pred ccccCCCCCcCCCCccccccccccCcccchhhHhhhcCcCccccccc
Q 036712 367 ARVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQKSEQYCGICKN 413 (1020)
Q Consensus 367 ~~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k 413 (1020)
|+.|..||...|. +..+|..|+.-... ..||-|+.
T Consensus 1 M~~Cp~Cg~~n~~-----------~akFC~~CG~~l~~-~~Cp~CG~ 35 (645)
T PRK14559 1 MLICPQCQFENPN-----------NNRFCQKCGTSLTH-KPCPQCGT 35 (645)
T ss_pred CCcCCCCCCcCCC-----------CCccccccCCCCCC-CcCCCCCC
Confidence 5789999987443 45689999887653 57888875
No 107
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=47.48 E-value=13 Score=31.67 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=24.9
Q ss_pred ccCCCCCcCCCCccccccccccCcccchhhHhhhcCcC
Q 036712 369 VCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQKSEQ 406 (1020)
Q Consensus 369 ~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~~g~ 406 (1020)
+|..||.+....+. +. ..+...||+.|+..+++..
T Consensus 1 ~C~~C~~~~Tp~WR--~g-~~~~~~LCNaCgl~~~k~~ 35 (54)
T cd00202 1 ACSNCGTTTTPLWR--RG-PSGGSTLCNACGLYWKKHG 35 (54)
T ss_pred CCCCCCCCCCcccc--cC-CCCcchHHHHHHHHHHhcC
Confidence 59999997665442 22 2457899999999887654
No 108
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=46.93 E-value=8.3 Score=42.99 Aligned_cols=69 Identities=23% Similarity=0.540 Sum_probs=39.4
Q ss_pred ccchhhHhhhc-------------CcCccccccccccCC----------CCCCceecCCCCcEEcCcccccchhhhccc-
Q 036712 393 FLCKHCSKLQK-------------SEQYCGICKNIWHHS----------DSGNWVCCDGCNVWVHAECDEISGKHFKDL- 448 (1020)
Q Consensus 393 ~lC~~C~~l~~-------------~g~~C~iC~k~y~~~----------d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l- 448 (1020)
+-|..|.|.|- -..-|+||+|.|.-- -|++=-+|..|.+-|=..= +|. .++...
T Consensus 162 ~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRS-NLR-AHmQTHS 239 (279)
T KOG2462|consen 162 FSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRS-NLR-AHMQTHS 239 (279)
T ss_pred ccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchH-HHH-HHHHhhc
Confidence 44666666543 256677777777522 2566667777776553211 010 122222
Q ss_pred CCCceeCCCcCcccc
Q 036712 449 EHIDYYCPNCRVKFK 463 (1020)
Q Consensus 449 ~~~~Y~Cp~C~~~~~ 463 (1020)
....|.|+.|.+.+-
T Consensus 240 ~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 240 DVKKHQCPRCGKSFA 254 (279)
T ss_pred CCccccCcchhhHHH
Confidence 245699999998765
No 109
>PF12773 DZR: Double zinc ribbon
Probab=46.79 E-value=11 Score=30.99 Aligned_cols=45 Identities=29% Similarity=0.668 Sum_probs=30.7
Q ss_pred cCCCCCcCCCCccccccccccCcccchhhHhhhc----CcCccccccccccCCCCCCceecCCC
Q 036712 370 CDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQK----SEQYCGICKNIWHHSDSGNWVCCDGC 429 (1020)
Q Consensus 370 C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~----~g~~C~iC~k~y~~~d~~~wv~Cd~C 429 (1020)
|..||...+ .+..+|..|+.... ...+|+.|+... ...|--|..|
T Consensus 1 Cp~Cg~~~~-----------~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~----~~~~~fC~~C 49 (50)
T PF12773_consen 1 CPHCGTPNP-----------DDAKFCPHCGTPLPPPDQSKKICPNCGAEN----PPNAKFCPNC 49 (50)
T ss_pred CCCcCCcCC-----------ccccCChhhcCChhhccCCCCCCcCCcCCC----cCCcCccCcc
Confidence 667777522 25788999998776 357899998753 3346666665
No 110
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=46.63 E-value=9 Score=35.64 Aligned_cols=54 Identities=26% Similarity=0.490 Sum_probs=30.5
Q ss_pred cCccccccccccC--------CCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCcccc
Q 036712 405 EQYCGICKNIWHH--------SDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVKFK 463 (1020)
Q Consensus 405 g~~C~iC~k~y~~--------~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~~~ 463 (1020)
..-|+||...|+. .|+-.-|- ..|.+=||..|...=- ..+...=.||-||....
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~-g~C~H~FH~hCI~kWl----~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVW-GKCSHNFHMHCILKWL----STQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceee-ccCccHHHHHHHHHHH----ccccCCCCCCCcCCeee
Confidence 3445555554442 23333343 3599999999964211 11223469999997544
No 111
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=46.01 E-value=7.6 Score=29.81 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=28.7
Q ss_pred cccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCcc
Q 036712 408 CGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVK 461 (1020)
Q Consensus 408 C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~ 461 (1020)
|+||...+ ..-+.-..|.+-+|..|...... .....||.|+..
T Consensus 2 C~iC~~~~-----~~~~~~~~C~H~~c~~C~~~~~~------~~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEF-----REPVVLLPCGHVFCRSCIDKWLK------SGKNTCPLCRTP 44 (45)
T ss_pred CCcCchhh-----hCceEecCCCChhcHHHHHHHHH------hCcCCCCCCCCc
Confidence 78887765 23344566999999999642211 145789999853
No 112
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.95 E-value=6.5 Score=35.21 Aligned_cols=36 Identities=25% Similarity=0.555 Sum_probs=22.5
Q ss_pred ccCCCCCcCCCCccccccccccCcccchhhHhhhcCcCccccccc
Q 036712 369 VCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQKSEQYCGICKN 413 (1020)
Q Consensus 369 ~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k 413 (1020)
.|..|+..+ .|.++...|..|.+-|.+--+||-|++
T Consensus 3 ~CP~C~~~L---------~~~~~~~~C~~C~~~~~~~a~CPdC~~ 38 (70)
T PF07191_consen 3 TCPKCQQEL---------EWQGGHYHCEACQKDYKKEAFCPDCGQ 38 (70)
T ss_dssp B-SSS-SBE---------EEETTEEEETTT--EEEEEEE-TTT-S
T ss_pred cCCCCCCcc---------EEeCCEEECccccccceecccCCCccc
Confidence 577777642 233368889999999999999999975
No 113
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=45.36 E-value=15 Score=39.41 Aligned_cols=44 Identities=20% Similarity=0.665 Sum_probs=33.9
Q ss_pred CcccccccccCc---cCCCCcEEEcCCCCchhcCcccCCcccCCCCceeeccCCC
Q 036712 591 TTERCAICRWVE---DWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCRACEM 642 (1020)
Q Consensus 591 ~d~~C~VC~~~e---~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W~C~~C~~ 642 (1020)
....|.+|.+.+ ..+.+....|..|...+|..|+.- . -|+.|.-
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----~----~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----K----SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----C----CCCCcHh
Confidence 346899998765 345667899999999999999963 1 2888863
No 114
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=45.29 E-value=9.4 Score=28.23 Aligned_cols=28 Identities=32% Similarity=0.757 Sum_probs=12.2
Q ss_pred cccccccCccCCCCcEEEcCCCCchhcCcc
Q 036712 594 RCAICRWVEDWDYNKIIICNRCQIAVHQEC 623 (1020)
Q Consensus 594 ~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~C 623 (1020)
.|.+|+..... +....|..|+..+|..|
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S----EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC--CceEECccCCCccChhc
Confidence 48899876432 47999999999999987
No 115
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=42.77 E-value=29 Score=27.77 Aligned_cols=48 Identities=27% Similarity=0.310 Sum_probs=32.8
Q ss_pred CCEEEEeeCCCCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCcccc
Q 036712 225 GDLVWAKCGRSYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFP 289 (1020)
Q Consensus 225 gd~VwaK~gk~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~p 289 (1020)
|++|.|+...--.|.+|+|..-. + .+.+-|+|..+ .+...|....|.|
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~---~--------~~~~~V~f~Dy------G~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSIL---S--------DGKVEVFFVDY------GNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEEC---C--------CCcEEEEEEcC------CCcEEEeHHHcCC
Confidence 78999999322679999997653 1 44688999873 3345666555543
No 116
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=41.94 E-value=14 Score=41.32 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=51.9
Q ss_pred CccccCCCCCcCCCCccccccccccCcccchhhHhhhcCcCccccccccccCCC--------CCCceecCCCCcEEcCcc
Q 036712 366 VARVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQKSEQYCGICKNIWHHSD--------SGNWVCCDGCNVWVHAEC 437 (1020)
Q Consensus 366 ~~~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k~y~~~d--------~~~wv~Cd~C~~WvH~~C 437 (1020)
..-.|..||.....-+.=.+| .|+-|. ..-++-+-|++|+|+|..=- ..-=-.|..|.+-|+--=
T Consensus 129 ~r~~c~eCgk~ysT~snLsrH----kQ~H~~---~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPW 201 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRH----KQTHRS---LDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPW 201 (279)
T ss_pred Cceeccccccccccccccchh----hccccc---ccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchH
Confidence 445688899876555411123 355443 33478889999999996541 223346788887665322
Q ss_pred cccchhhhcc-cCCCceeCCCcCcccc
Q 036712 438 DEISGKHFKD-LEHIDYYCPNCRVKFK 463 (1020)
Q Consensus 438 ~~~~~~~~~~-l~~~~Y~Cp~C~~~~~ 463 (1020)
. --.++.. .....|.||.|.+.+-
T Consensus 202 L--LQGHiRTHTGEKPF~C~hC~kAFA 226 (279)
T KOG2462|consen 202 L--LQGHIRTHTGEKPFSCPHCGKAFA 226 (279)
T ss_pred H--hhcccccccCCCCccCCcccchhc
Confidence 1 0001111 1356699999998764
No 117
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=41.02 E-value=14 Score=29.70 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=25.7
Q ss_pred CcCccccccccccCCCCCCceecCCCCcEEcCccccc
Q 036712 404 SEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEI 440 (1020)
Q Consensus 404 ~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~ 440 (1020)
...+|-+|.+....- ......|+.|+.-+|.+|-..
T Consensus 10 ~~~~C~~C~~~i~~~-~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 10 KPTFCDVCRKSIWGL-FKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCCChhhcchhhhcc-ccceeEcCCCCCchhhhhhcc
Confidence 356677776653221 357889999999999999643
No 118
>PHA02929 N1R/p28-like protein; Provisional
Probab=39.73 E-value=15 Score=40.50 Aligned_cols=53 Identities=25% Similarity=0.497 Sum_probs=33.8
Q ss_pred CcCccccccccccCCCCC--CceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCcccc
Q 036712 404 SEQYCGICKNIWHHSDSG--NWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVKFK 463 (1020)
Q Consensus 404 ~g~~C~iC~k~y~~~d~~--~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~~~ 463 (1020)
+..-|+||...+.+.... ....=..|.|-||..|... +-...=+||.||....
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~-------Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDI-------WKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHH-------HHhcCCCCCCCCCEee
Confidence 356899998865443211 1223358999999999632 2122348999997544
No 119
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.97 E-value=22 Score=34.81 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=12.2
Q ss_pred ccCccccCCCCCcCCCCc
Q 036712 364 YKVARVCDGCGLFRPCKL 381 (1020)
Q Consensus 364 ~~~~~~C~~Cg~~~p~k~ 381 (1020)
+.-+..|..||.++-...
T Consensus 12 C~LP~~CpiCgLtLVss~ 29 (112)
T TIGR00622 12 CELPVECPICGLTLILST 29 (112)
T ss_pred cCCCCcCCcCCCEEeccc
Confidence 556677888888774433
No 120
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=38.19 E-value=69 Score=30.63 Aligned_cols=82 Identities=24% Similarity=0.253 Sum_probs=43.9
Q ss_pred CCCEEEEeeCC-CCCCCCceecCCCCCCchhhhcccCCCeEEEEEecccCCCCCcceeeeecCccccchhcccccCcccc
Q 036712 224 LGDLVWAKCGR-SYPAWPAVVIDPILQAPEAVLRCCIPGCLCVMFFGYSKNGTQRDYGWVKQGMLFPFAEFMDKCEPTQL 302 (1020)
Q Consensus 224 ~gd~VwaK~gk-~~p~WPa~v~~p~~~~p~~~~~~~~~~~~~V~FfG~~~~~~~~dy~W~~~~~i~py~e~~~~~~q~~~ 302 (1020)
+|-+|-+..-+ +-.|.||.|+.|.. -+.|. . ..+.++|.=|= ...|+=|-+..|..|.... +
T Consensus 8 lGkVV~V~~~~~k~~W~PALVVsPsc--~ddv~-V-kKD~~lVRSFk------D~KfysV~rkd~~e~~~~~-------~ 70 (96)
T PF08169_consen 8 LGKVVCVESTKKKTSWFPALVVSPSC--NDDVT-V-KKDQCLVRSFK------DGKFYSVARKDVREFDIDS-------L 70 (96)
T ss_dssp TTSEEEEE-SS-SS-EEEEEEE--SS---SS------TT-EEEEESS------S--EEEE-TTTEE---STT-------S
T ss_pred cCcEEEEEcCCCCCceeeEEEEcCCc--cceee-e-ccceEEEEEec------cCceEEEEhhhhhhccccc-------C
Confidence 89999998733 45799999999972 23332 1 26789999997 4557888888887765331 1
Q ss_pred ccCChHHHHHHHHHHHH-hcCC
Q 036712 303 HKSKISGFQIALEEAVL-AENG 323 (1020)
Q Consensus 303 ~~~k~~~f~~Aleea~~-ae~g 323 (1020)
.+. ....+.||++|+. .+.|
T Consensus 71 ~k~-e~s~k~al~~A~~Fl~~~ 91 (96)
T PF08169_consen 71 PKS-ESSLKPALDKASTFLKTG 91 (96)
T ss_dssp -HH-HHHH-HHHHHHHHHHHS-
T ss_pred Ccc-cchhhHHHHHHHHHHhcC
Confidence 111 1236789999854 4443
No 121
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=37.89 E-value=25 Score=29.19 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=21.7
Q ss_pred ccccccccccCCCCCCceecCCCCcEEcCcccccch-hhhcccCCCceeCCCcCcc
Q 036712 407 YCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISG-KHFKDLEHIDYYCPNCRVK 461 (1020)
Q Consensus 407 ~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~-~~~~~l~~~~Y~Cp~C~~~ 461 (1020)
.|.+|+-+|.+..+... .+|.. ..+++| ..+|.||.|...
T Consensus 3 ~C~~CgyvYd~~~Gd~~--------------~~i~pGt~F~~L-p~~w~CP~C~a~ 43 (47)
T PF00301_consen 3 QCPVCGYVYDPEKGDPE--------------NGIPPGTPFEDL-PDDWVCPVCGAP 43 (47)
T ss_dssp EETTTSBEEETTTBBGG--------------GTB-TT--GGGS--TT-B-TTTSSB
T ss_pred CCCCCCEEEcCCcCCcc--------------cCcCCCCCHHHC-CCCCcCcCCCCc
Confidence 48888888877643211 12322 246677 445999999864
No 122
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=37.67 E-value=13 Score=29.70 Aligned_cols=35 Identities=29% Similarity=0.556 Sum_probs=25.4
Q ss_pred cCcCccccccccccCCCCCCceecCCCCcEEcCcccc
Q 036712 403 KSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDE 439 (1020)
Q Consensus 403 ~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~ 439 (1020)
....+|-+|++...... ..+.|..|+.-+|..|-.
T Consensus 9 ~~~~~C~~C~~~i~~~~--~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 9 KKPTKCCVCRKSIWGSF--QGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCCCccccccccCcCC--CCcCCCCCCchHHHHHHh
Confidence 34567888877543221 578999999999999964
No 123
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=36.85 E-value=20 Score=30.38 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=11.8
Q ss_pred EEEEccCCCCCCeEE
Q 036712 977 VLIAKTNVSAGDELT 991 (1020)
Q Consensus 977 ~l~A~RdI~~GEELT 991 (1020)
+++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 589999999999996
No 124
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=35.49 E-value=12 Score=47.44 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=0.0
Q ss_pred CccccCCCCCcCCCCccccccccccCcccchhhHhhhcCcCccccccccccC
Q 036712 366 VARVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQKSEQYCGICKNIWHH 417 (1020)
Q Consensus 366 ~~~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k~y~~ 417 (1020)
--++|.+||..+ .+..|+.|+-....-.+||-|+....+
T Consensus 654 ~~r~Cp~Cg~~t-------------~~~~Cp~CG~~T~~~~~Cp~C~~~~~~ 692 (900)
T PF03833_consen 654 GRRRCPKCGKET-------------FYNRCPECGSHTEPVYVCPDCGIEVEE 692 (900)
T ss_dssp ----------------------------------------------------
T ss_pred ecccCcccCCcc-------------hhhcCcccCCccccceeccccccccCc
Confidence 457899999851 367899999998899999999875543
No 125
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=35.28 E-value=37 Score=27.99 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=25.4
Q ss_pred cccccccccCccCCCCcEEEcCCCCchhcCcccCCc
Q 036712 592 TERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVT 627 (1020)
Q Consensus 592 d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~ 627 (1020)
...|.+|...=......-+.|..|++.+|..|....
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 457999987532234578999999999999998544
No 126
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=35.11 E-value=29 Score=25.77 Aligned_cols=27 Identities=30% Similarity=0.827 Sum_probs=21.7
Q ss_pred ccccccCC-Cce-eeecCCcccccccccc
Q 036712 698 SCIICKQT-HGS-CTQCCKCATYFHAMCA 724 (1020)
Q Consensus 698 ~C~iC~~~-~Ga-~IqC~~C~~~FHv~CA 724 (1020)
.|.+|++. .|. .-.|..|.-.+|+.||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 48899864 455 6789888899999997
No 127
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=34.85 E-value=24 Score=44.88 Aligned_cols=50 Identities=24% Similarity=0.632 Sum_probs=30.4
Q ss_pred cccchhhHhhhcCcCccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCcc
Q 036712 392 QFLCKHCSKLQKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVK 461 (1020)
Q Consensus 392 ~~lC~~C~~l~~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~ 461 (1020)
+.+|..|+...+ ||-|.-.+.-.....-+.|..|++ .+.....||.|.+.
T Consensus 435 ~l~C~~Cg~v~~----Cp~Cd~~lt~H~~~~~L~CH~Cg~----------------~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCGYIAE----CPNCDSPLTLHKATGQLRCHYCGY----------------QEPIPQSCPECGSE 484 (730)
T ss_pred eeecccCCCccc----CCCCCcceEEecCCCeeEeCCCCC----------------CCCCCCCCCCCCCC
Confidence 455666665543 666655443334456777777764 13466889999854
No 128
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=34.63 E-value=18 Score=34.62 Aligned_cols=34 Identities=26% Similarity=0.676 Sum_probs=28.1
Q ss_pred CcCccccccccccCCCCCCceecCC--CCcEEcCcccccch
Q 036712 404 SEQYCGICKNIWHHSDSGNWVCCDG--CNVWVHAECDEISG 442 (1020)
Q Consensus 404 ~g~~C~iC~k~y~~~d~~~wv~Cd~--C~~WvH~~C~~~~~ 442 (1020)
...-|.||++. .+-.|+|.. |..+||..|-....
T Consensus 54 ~~~~C~iC~~~-----~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 54 FKLKCSICGKS-----GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred cCCcCcCCCCC-----CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 47789999863 677999998 99999999975544
No 129
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.68 E-value=23 Score=43.31 Aligned_cols=50 Identities=20% Similarity=0.495 Sum_probs=32.0
Q ss_pred ccCccccCCCCCcCCCCc-c-ccccccccCcccchhhHhhhcCcCccccccc
Q 036712 364 YKVARVCDGCGLFRPCKL-K-RMKGLVSETQFLCKHCSKLQKSEQYCGICKN 413 (1020)
Q Consensus 364 ~~~~~~C~~Cg~~~p~k~-~-~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k 413 (1020)
+...+.|.+||...-|.- + ....+...+.+.|+.|+....--..||-|+.
T Consensus 210 ya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 210 YSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred CCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCC
Confidence 345667777776554443 1 1111123357889999988888888998864
No 130
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=33.26 E-value=31 Score=25.61 Aligned_cols=27 Identities=30% Similarity=0.796 Sum_probs=21.4
Q ss_pred cccccccCccCCCCc-EEEcCCCCchhcCcc
Q 036712 594 RCAICRWVEDWDYNK-IIICNRCQIAVHQEC 623 (1020)
Q Consensus 594 ~C~VC~~~e~~~~n~-Ll~Cd~C~~~vH~~C 623 (1020)
.|.||+..-+ +. +..|+.|...+|..|
T Consensus 2 ~C~~C~~~~~---~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKID---GFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcC---CCEeEEeCCCCCeEcCcc
Confidence 4899976432 33 899999999999888
No 131
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=32.52 E-value=34 Score=40.36 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=49.8
Q ss_pred ccCccccCCCCCcCCCCc-cccccccccCcccchhhHhhhcCcCccccccccccCCCCCC-ceecCCCCcEEcCcccccc
Q 036712 364 YKVARVCDGCGLFRPCKL-KRMKGLVSETQFLCKHCSKLQKSEQYCGICKNIWHHSDSGN-WVCCDGCNVWVHAECDEIS 441 (1020)
Q Consensus 364 ~~~~~~C~~Cg~~~p~k~-~~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k~y~~~d~~~-wv~Cd~C~~WvH~~C~~~~ 441 (1020)
+-.|-+|..|...+.|.. .- + .++...|-.|+. .+=---|.+|.+-.-+.|+.+ -|.=-.=++-||.+|
T Consensus 357 Hp~CF~Cv~C~r~ldgipFtv--d--~~n~v~Cv~dfh-~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv~C---- 427 (468)
T KOG1701|consen 357 HPGCFTCVVCARCLDGIPFTV--D--SQNNVYCVPDFH-KKFAPRCSVCGNPILPRDGKDETVRVVAMDRDFHVNC---- 427 (468)
T ss_pred CCCceEEEEeccccCCccccc--c--CCCceeeehhhh-hhcCcchhhccCCccCCCCCcceEEEEEccccccccc----
Confidence 567888888888877766 21 1 126788988875 112345889988777776444 333333456777777
Q ss_pred hhhhcccCCCceeCCCcC
Q 036712 442 GKHFKDLEHIDYYCPNCR 459 (1020)
Q Consensus 442 ~~~~~~l~~~~Y~Cp~C~ 459 (1020)
|+|-.|+
T Consensus 428 -----------Y~CEDCg 434 (468)
T KOG1701|consen 428 -----------YKCEDCG 434 (468)
T ss_pred -----------eehhhcC
Confidence 8888887
No 132
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=32.31 E-value=18 Score=45.10 Aligned_cols=43 Identities=26% Similarity=0.592 Sum_probs=30.8
Q ss_pred CcccchhhHhhhcCc---------------CccccccccccCC----------CCCCceecCCCCcEE
Q 036712 391 TQFLCKHCSKLQKSE---------------QYCGICKNIWHHS----------DSGNWVCCDGCNVWV 433 (1020)
Q Consensus 391 ~~~lC~~C~~l~~~g---------------~~C~iC~k~y~~~----------d~~~wv~Cd~C~~Wv 433 (1020)
..+.|+.|.|.|.|- .-|.||+|+|.+. .|.+=-|||.|-+-|
T Consensus 893 gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRF 960 (1007)
T KOG3623|consen 893 GMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRF 960 (1007)
T ss_pred ccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhc
Confidence 467799999988642 3588888888775 366667777775433
No 133
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=31.66 E-value=14 Score=28.67 Aligned_cols=39 Identities=33% Similarity=0.594 Sum_probs=26.0
Q ss_pred cccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCc
Q 036712 408 CGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNC 458 (1020)
Q Consensus 408 C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C 458 (1020)
|+||...+.+ -+.-..|.|.|..+|.... ++. ...||.|
T Consensus 1 C~iC~~~~~~-----~~~~~~CGH~fC~~C~~~~------~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVTPCGHSFCKECIEKY------LEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEECTTSEEEEHHHHHHH------HHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEECCCCCchhHHHHHHH------HHC-cCCCcCC
Confidence 7899765543 5578999999999995322 222 3688877
No 134
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=30.52 E-value=26 Score=28.21 Aligned_cols=35 Identities=20% Similarity=0.507 Sum_probs=25.3
Q ss_pred cccccccccCccCCCCcEEEcCCCCchhcCcccCC
Q 036712 592 TERCAICRWVEDWDYNKIIICNRCQIAVHQECYGV 626 (1020)
Q Consensus 592 d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv 626 (1020)
...|.+|...-..-...-+.|+.|++.+|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 35699997643211246788999999999999743
No 135
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=30.32 E-value=57 Score=40.89 Aligned_cols=72 Identities=22% Similarity=0.423 Sum_probs=48.3
Q ss_pred hhhhHHHHHHHhhhcCCCCCCCCCcccccccccCccCCCCcEEEcCCCCchhcCccc-CCcccCCCCceeeccCCCC
Q 036712 568 VKLDEKKLLAFMKEKYEPVSVKWTTERCAICRWVEDWDYNKIIICNRCQIAVHQECY-GVTDVQDFTSWVCRACEMP 643 (1020)
Q Consensus 568 ~~~~~~~ll~~l~~~~~p~~~~~~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CY-gv~~~p~~~~W~C~~C~~~ 643 (1020)
.++...++...++.++.|+........|.+|+..-+ +--++|..|...+ ..|. ....+.+..-|+|+.|.+.
T Consensus 1093 ~kq~ye~La~~iFsk~~p~d~~~~~vdc~~cg~~i~---~~~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH~ 1165 (1189)
T KOG2041|consen 1093 EKQEYENLAFRIFSKNPPVDPNSAKVDCSVCGAKID---PYDLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKHR 1165 (1189)
T ss_pred HHHHHHHHHHHHhccCCCCCCCccceeeeecCCcCC---ccCCCChhhcCcC-ceeeccCCccccceEEEccccccc
Confidence 344444555556677788887766788999987532 3457899998777 4565 3334444457999999863
No 136
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=30.09 E-value=29 Score=26.87 Aligned_cols=29 Identities=21% Similarity=0.716 Sum_probs=10.3
Q ss_pred Ccccccccccc----CCCCCCceecCCCCcEEcC
Q 036712 406 QYCGICKNIWH----HSDSGNWVCCDGCNVWVHA 435 (1020)
Q Consensus 406 ~~C~iC~k~y~----~~d~~~wv~Cd~C~~WvH~ 435 (1020)
+||+.|+..-. +.|+..=.-|..|. |||.
T Consensus 1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg-~IhY 33 (34)
T PF14803_consen 1 KFCPQCGGPLERRIPEGDDRERLVCPACG-FIHY 33 (34)
T ss_dssp -B-TTT--B-EEE--TT-SS-EEEETTTT-EEE-
T ss_pred CccccccChhhhhcCCCCCccceECCCCC-CEEe
Confidence 36666665322 12344445556654 4443
No 137
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=29.18 E-value=28 Score=43.24 Aligned_cols=36 Identities=31% Similarity=0.714 Sum_probs=30.6
Q ss_pred CCCceecC--CCCcEEcCcccccchhhhcccCCCceeCCCcCc
Q 036712 420 SGNWVCCD--GCNVWVHAECDEISGKHFKDLEHIDYYCPNCRV 460 (1020)
Q Consensus 420 ~~~wv~Cd--~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~ 460 (1020)
+...|-|| .|.+-||-.|-+|-. .+...|+|-.|..
T Consensus 19 eNPLVYCDG~nCsVAVHQaCYGIvq-----VPtGpWfCrKCes 56 (900)
T KOG0956|consen 19 ENPLVYCDGHNCSVAVHQACYGIVQ-----VPTGPWFCRKCES 56 (900)
T ss_pred cCceeeecCCCceeeeehhcceeEe-----cCCCchhhhhhhh
Confidence 45789999 699999999988764 6788899999984
No 138
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=28.64 E-value=40 Score=27.72 Aligned_cols=33 Identities=33% Similarity=0.694 Sum_probs=23.1
Q ss_pred cccCCCCCcCCCCccccccccccCcccchhhHhh
Q 036712 368 RVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKL 401 (1020)
Q Consensus 368 ~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l 401 (1020)
+.|++|+.. |-.+.+++=....++.||..|...
T Consensus 1 V~Cd~C~~~-pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMF-PINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCC-CCccCeEECCCCCCccchHHhhCC
Confidence 369999964 333335556667789999999875
No 139
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.53 E-value=31 Score=43.95 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=38.4
Q ss_pred ccCccccCCCCCcCCCCc--cccccccccCcccchhhHhhhcCcCccccccc
Q 036712 364 YKVARVCDGCGLFRPCKL--KRMKGLVSETQFLCKHCSKLQKSEQYCGICKN 413 (1020)
Q Consensus 364 ~~~~~~C~~Cg~~~p~k~--~~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k 413 (1020)
+-.-+.|..||...-|.- ....-+...++..|+.|+.....-+.||-|+.
T Consensus 432 ys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs 483 (730)
T COG1198 432 YAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGS 483 (730)
T ss_pred ccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCC
Confidence 566888999998776655 33444455579999999999888899999974
No 140
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.26 E-value=37 Score=44.17 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=21.0
Q ss_pred cCccccCCCCCcCCCCccccccccccCcccchhhHhhhcCcCcccccc
Q 036712 365 KVARVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKLQKSEQYCGICK 412 (1020)
Q Consensus 365 ~~~~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~ 412 (1020)
...+.|.+||..+ ..+.|..|+..-..-.+||-|+
T Consensus 624 Vg~RfCpsCG~~t-------------~~frCP~CG~~Te~i~fCP~CG 658 (1121)
T PRK04023 624 IGRRKCPSCGKET-------------FYRRCPFCGTHTEPVYRCPRCG 658 (1121)
T ss_pred ccCccCCCCCCcC-------------CcccCCCCCCCCCcceeCcccc
Confidence 4566777887741 2456777766554555666663
No 141
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=26.81 E-value=3.1 Score=41.68 Aligned_cols=76 Identities=7% Similarity=0.046 Sum_probs=56.4
Q ss_pred CCCceecC-CCCcEEcCcccccchhhhcccCCCce--eCCCcCccccCCCCCcCCCCCCCCcccCCCCccCCCceeEeec
Q 036712 420 SGNWVCCD-GCNVWVHAECDEISGKHFKDLEHIDY--YCPNCRVKFKFQSSNIGKWQPGVSAVENDGQMVLPDKIMVVCN 496 (1020)
Q Consensus 420 ~~~wv~Cd-~C~~WvH~~C~~~~~~~~~~l~~~~Y--~Cp~C~~~~~~~~~~~~~~~~k~ks~~~~~~~~~~e~l~V~C~ 496 (1020)
..-+++|. .+..|.|..++.++.- ........+ .|+.|..--...+.|++.++++++.+.|++...+.+.++.+-+
T Consensus 11 ~s~l~~c~~~~~~~~~~~~E~l~g~-~~~~~~~~~~~~~~~~~~~~~~~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiq 89 (131)
T cd05493 11 KSHLLRCGPKPPALLPETEESLPGR-KSPVTPEVLQGLLSSEVKQEELPPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQ 89 (131)
T ss_pred ceeeeecCcCChhhhhHHHHhhhcc-cccCCcccccccccchhcccCCCcccHHHHHHHHhccceehHHHHHHHHHHHHH
Confidence 55688888 7889999999988764 111112223 4777777666778899999999999999988888777655543
No 142
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=26.75 E-value=42 Score=32.90 Aligned_cols=51 Identities=22% Similarity=0.581 Sum_probs=35.6
Q ss_pred CCcccccccccCccCCCCcEEEcCCCCchhcCcccCCcccCCCCceeeccCCC
Q 036712 590 WTTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSWVCRACEM 642 (1020)
Q Consensus 590 ~~d~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W~C~~C~~ 642 (1020)
.++..|..|...-..-.|.-..|..|...|=..|-.. .+....|+|..|..
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred cCCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 3567899998743333455589999999999998655 33337899999964
No 143
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=26.33 E-value=16 Score=33.46 Aligned_cols=30 Identities=37% Similarity=0.998 Sum_probs=22.9
Q ss_pred cccccccCC-CceeeecC--------------Ccccccccccccc
Q 036712 697 KSCIICKQT-HGSCTQCC--------------KCATYFHAMCASR 726 (1020)
Q Consensus 697 ~~C~iC~~~-~Ga~IqC~--------------~C~~~FHv~CAr~ 726 (1020)
..|.||+.. .|.|++|. .|..+||..|..+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~r 65 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYR 65 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHH
Confidence 468888864 57888883 3899999999855
No 144
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.24 E-value=56 Score=34.52 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=31.0
Q ss_pred CccccCCCCCcCCCCccccccccccCcccchhhHh-hhcCcCcccccccc
Q 036712 366 VARVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSK-LQKSEQYCGICKNI 414 (1020)
Q Consensus 366 ~~~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~-l~~~g~~C~iC~k~ 414 (1020)
+..-|-+|+.++---.++..-+..=+-.+|..|.+ +.+.++-||+|+|-
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kk 176 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKK 176 (187)
T ss_pred ccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccc
Confidence 44455677766544332211112223678999998 67889999999973
No 145
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=25.87 E-value=59 Score=27.35 Aligned_cols=17 Identities=41% Similarity=0.976 Sum_probs=12.3
Q ss_pred hhcccCCCceeCCCcCcc
Q 036712 444 HFKDLEHIDYYCPNCRVK 461 (1020)
Q Consensus 444 ~~~~l~~~~Y~Cp~C~~~ 461 (1020)
.+++|++ +|.||.|...
T Consensus 27 ~f~~Lp~-~w~CP~C~a~ 43 (50)
T cd00730 27 PFEDLPD-DWVCPVCGAG 43 (50)
T ss_pred CHhHCCC-CCCCCCCCCc
Confidence 4556644 7999999864
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.86 E-value=33 Score=43.42 Aligned_cols=49 Identities=16% Similarity=0.410 Sum_probs=29.9
Q ss_pred ccCccccCCCCCcCCCCc-c-ccccccccCcccchhhHhhhcCcCccccccc
Q 036712 364 YKVARVCDGCGLFRPCKL-K-RMKGLVSETQFLCKHCSKLQKSEQYCGICKN 413 (1020)
Q Consensus 364 ~~~~~~C~~Cg~~~p~k~-~-~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k 413 (1020)
+...+.|.+||...-|.- + ...-+...+.+.|+.|+... ....||-|+.
T Consensus 380 yap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~-~p~~Cp~Cgs 430 (665)
T PRK14873 380 YVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAA-PDWRCPRCGS 430 (665)
T ss_pred CCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCC-cCccCCCCcC
Confidence 456677777776554443 1 11111223567799998865 5788888864
No 147
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=25.27 E-value=51 Score=26.69 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=20.4
Q ss_pred cccCCCCCcCCCCccccccccccCcccchhhHh
Q 036712 368 RVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSK 400 (1020)
Q Consensus 368 ~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~ 400 (1020)
+.|++|+..+.| .+++=....++.||..|..
T Consensus 1 v~Cd~C~~~i~G--~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 1 VICDGCQGPIVG--VRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCCcCcC--CeEECCCCCCccchHHhhC
Confidence 469999984333 3444445567888888875
No 148
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=24.87 E-value=55 Score=38.05 Aligned_cols=54 Identities=28% Similarity=0.498 Sum_probs=37.0
Q ss_pred hhcCcCcccccccc-ccCCCCCCceecC------CCCcEEcCcccccchhhhcccCCCceeCCCcCcc
Q 036712 401 LQKSEQYCGICKNI-WHHSDSGNWVCCD------GCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVK 461 (1020)
Q Consensus 401 l~~~g~~C~iC~k~-y~~~d~~~wv~Cd------~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~ 461 (1020)
|-+..++|.||..- ++++...-|-.=| .|.|-+|.+|. +.+-..+-+||.||..
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CL-------knW~ERqQTCPICr~p 343 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCL-------KNWLERQQTCPICRRP 343 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHH-------HHHHHhccCCCcccCc
Confidence 36678999999865 4443233333333 69999999994 4454566899999965
No 149
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.77 E-value=19 Score=39.78 Aligned_cols=57 Identities=28% Similarity=0.635 Sum_probs=37.5
Q ss_pred CccccccccccCCCCCCce---ecCCCCcEEcCcccc--cchhhhcccCCCceeCCCcCcccc
Q 036712 406 QYCGICKNIWHHSDSGNWV---CCDGCNVWVHAECDE--ISGKHFKDLEHIDYYCPNCRVKFK 463 (1020)
Q Consensus 406 ~~C~iC~k~y~~~d~~~wv---~Cd~C~~WvH~~C~~--~~~~~~~~l~~~~Y~Cp~C~~~~~ 463 (1020)
.+|-||-..=.|+--..|| +|-+=.+|||-.|.. |.++.. .-+--.-.||.|++...
T Consensus 21 R~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 21 RCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-GNPLQTVSCPQCQTEYI 82 (293)
T ss_pred eeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhc-CCCCceeechhhcchhe
Confidence 4577886544444456688 588999999999987 344322 11223489999997544
No 150
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.68 E-value=50 Score=40.45 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=35.4
Q ss_pred CcccchhhHhhhcCcCccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCc
Q 036712 391 TQFLCKHCSKLQKSEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRV 460 (1020)
Q Consensus 391 ~~~lC~~C~~l~~~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~ 460 (1020)
...+|..|+... -||-|.-...-......+.|..|+. .......||.|.+
T Consensus 212 ~~~~C~~Cg~~~----~C~~C~~~l~~h~~~~~l~Ch~Cg~----------------~~~~~~~Cp~C~s 261 (505)
T TIGR00595 212 KNLLCRSCGYIL----CCPNCDVSLTYHKKEGKLRCHYCGY----------------QEPIPKTCPQCGS 261 (505)
T ss_pred CeeEhhhCcCcc----CCCCCCCceEEecCCCeEEcCCCcC----------------cCCCCCCCCCCCC
Confidence 478999999966 4999975422223456889999973 2235579999985
No 151
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=24.33 E-value=12 Score=43.39 Aligned_cols=49 Identities=27% Similarity=0.526 Sum_probs=37.3
Q ss_pred CcCccccccccccCCCCCCceecCCCCcEEcCcccccchhhhcc-cCCCceeCCCcCc
Q 036712 404 SEQYCGICKNIWHHSDSGNWVCCDGCNVWVHAECDEISGKHFKD-LEHIDYYCPNCRV 460 (1020)
Q Consensus 404 ~g~~C~iC~k~y~~~d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~-l~~~~Y~Cp~C~~ 460 (1020)
-+-||+.|+.-|.-.+ +-+|=-.|.|.||..|. ++. +.+.+-.||.|++
T Consensus 364 ~~L~Cg~CGe~~Glk~--e~LqALpCsHIfH~rCl------~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKN--ERLQALPCSHIFHLRCL------QEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCc--ccccccchhHHHHHHHH------HHHHHhCCCCCCccHHH
Confidence 3679999999886543 45677789999999995 222 2477799999994
No 152
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=23.90 E-value=65 Score=24.85 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=15.5
Q ss_pred cccccccccCCC-----CCCceecCCCCcEEc
Q 036712 408 CGICKNIWHHSD-----SGNWVCCDGCNVWVH 434 (1020)
Q Consensus 408 C~iC~k~y~~~d-----~~~wv~Cd~C~~WvH 434 (1020)
||-|+..|.-++ .+.+|.|..|+.-+.
T Consensus 5 CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 5 CPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred CCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 666666654442 234677777765443
No 153
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=23.59 E-value=51 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=15.4
Q ss_pred cCccccccccccCCCCCCceecCCCCc
Q 036712 405 EQYCGICKNIWHHSDSGNWVCCDGCNV 431 (1020)
Q Consensus 405 g~~C~iC~k~y~~~d~~~wv~Cd~C~~ 431 (1020)
-.||+-|+..-....++...+|..|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 468888887666666777778888865
No 154
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=23.49 E-value=28 Score=31.87 Aligned_cols=55 Identities=25% Similarity=0.588 Sum_probs=22.6
Q ss_pred CcCccccccccccCC-CCCCceecCCCCcEEcCcccccchhhhcccCCCceeCCCcCccccC
Q 036712 404 SEQYCGICKNIWHHS-DSGNWVCCDGCNVWVHAECDEISGKHFKDLEHIDYYCPNCRVKFKF 464 (1020)
Q Consensus 404 ~g~~C~iC~k~y~~~-d~~~wv~Cd~C~~WvH~~C~~~~~~~~~~l~~~~Y~Cp~C~~~~~~ 464 (1020)
.+|.|-||+---.-+ ++...|.|..|..=|=-.|-.. +.....=.||.|+++...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY------Erkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY------ERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH------HHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHH------HhhcCcccccccCCCccc
Confidence 478888888654333 4788999999999888888421 223455789999986553
No 155
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=23.41 E-value=45 Score=27.81 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=18.5
Q ss_pred CcccchhhHh-hhcCcCcccccccc
Q 036712 391 TQFLCKHCSK-LQKSEQYCGICKNI 414 (1020)
Q Consensus 391 ~~~lC~~C~~-l~~~g~~C~iC~k~ 414 (1020)
+-.||-.|-- +.....+|+||++.
T Consensus 20 dHYLCl~CLt~ml~~s~~C~iC~~~ 44 (50)
T PF03854_consen 20 DHYLCLNCLTLMLSRSDRCPICGKP 44 (50)
T ss_dssp S-EEEHHHHHHT-SSSSEETTTTEE
T ss_pred chhHHHHHHHHHhccccCCCcccCc
Confidence 6789999965 56789999999874
No 156
>PRK05580 primosome assembly protein PriA; Validated
Probab=23.40 E-value=43 Score=42.55 Aligned_cols=50 Identities=20% Similarity=0.517 Sum_probs=30.5
Q ss_pred ccCccccCCCCCcCCCCc-c-ccccccccCcccchhhHhhhcCcCccccccc
Q 036712 364 YKVARVCDGCGLFRPCKL-K-RMKGLVSETQFLCKHCSKLQKSEQYCGICKN 413 (1020)
Q Consensus 364 ~~~~~~C~~Cg~~~p~k~-~-~~~~~~~~~~~lC~~C~~l~~~g~~C~iC~k 413 (1020)
+...+.|..||...-|.- . ...-+...+.+.|+.|+....-...||-|+.
T Consensus 378 y~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~ 429 (679)
T PRK05580 378 YAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGS 429 (679)
T ss_pred CCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcC
Confidence 345667777775544432 1 1111112357789999988877888888864
No 157
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=23.23 E-value=60 Score=38.78 Aligned_cols=49 Identities=27% Similarity=0.472 Sum_probs=34.1
Q ss_pred cccccccCccC-CCCcEEEcCCCCchhcCcccCCcc------cC------CCCceeeccCCC
Q 036712 594 RCAICRWVEDW-DYNKIIICNRCQIAVHQECYGVTD------VQ------DFTSWVCRACEM 642 (1020)
Q Consensus 594 ~C~VC~~~e~~-~~n~Ll~Cd~C~~~vH~~CYgv~~------~p------~~~~W~C~~C~~ 642 (1020)
.|.||...+.. +.-.++.||-|+..-|..|..-.. .. ....+.|..|..
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~ 191 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGK 191 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCC
Confidence 57888776543 334799999999999999972211 11 124799999975
No 158
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=22.90 E-value=30 Score=36.42 Aligned_cols=22 Identities=23% Similarity=0.889 Sum_probs=17.5
Q ss_pred cccchhhHhhhc-CcCccccccc
Q 036712 392 QFLCKHCSKLQK-SEQYCGICKN 413 (1020)
Q Consensus 392 ~~lC~~C~~l~~-~g~~C~iC~k 413 (1020)
...|..|.+.|. .+.+||+|+-
T Consensus 139 ~~rC~GC~~~f~~~~~~Cp~CG~ 161 (177)
T COG1439 139 RLRCHGCKRIFPEPKDFCPICGS 161 (177)
T ss_pred eEEEecCceecCCCCCcCCCCCC
Confidence 567888888887 7889999973
No 159
>KOG4333 consensus Nuclear DEAF-1 related transcriptional regulator (suppressin) and related SAND domain proteins [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=22.68 E-value=49 Score=39.43 Aligned_cols=66 Identities=23% Similarity=0.396 Sum_probs=52.6
Q ss_pred CCccCCCceeEeecccccccccccce---eeeccccCCCcccCchhhhhccCc-cccCcccceeecCccc
Q 036712 483 GQMVLPDKIMVVCNDVEGAYFPKLHL---VVCRCRSCGPKKLTLSEWERHTGC-RAKKWKYSVKVLGTML 548 (1020)
Q Consensus 483 ~~~~~~e~l~V~C~~~~g~l~~k~~~---i~CkC~~c~~~~~SpSefE~h~Gs-r~K~wk~sIr~k~~~~ 548 (1020)
+..+.+-..+++|+..+|.++-++.. +.-+|+.-.++.++|.+|-.++|. +.|.|+..|++.+.|+
T Consensus 81 ~~~~~~~~~~~tcG~~~~~l~~~~f~cPgi~~~cv~~~~~litPk~f~~l~~k~~~kDwk~~Ir~~~~ml 150 (425)
T KOG4333|consen 81 ADPEGRIVYPATCGASKGNLHTKLFACPGISVKCVEVGNELITPKQFTTLGGKSKQKDWKGAIRVSGVML 150 (425)
T ss_pred CCccceeeeccccccccceeEEeeeecCCcccceeeecceeeCcccccccccccccccchhheeeccccc
Confidence 34455556788999998887655443 556898888888999999999887 9999999999998773
No 160
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=22.55 E-value=52 Score=28.71 Aligned_cols=27 Identities=33% Similarity=0.739 Sum_probs=19.4
Q ss_pred cCccccCCCCCcC-CCCccccccccccCcccchhhH
Q 036712 365 KVARVCDGCGLFR-PCKLKRMKGLVSETQFLCKHCS 399 (1020)
Q Consensus 365 ~~~~~C~~Cg~~~-p~k~~~~~~~~~~~~~lC~~C~ 399 (1020)
+...+|.|||..+ |+..- -.+.|..|+
T Consensus 7 ~~~~~CtSCg~~i~p~e~~--------v~F~CPnCG 34 (61)
T COG2888 7 KDPPVCTSCGREIAPGETA--------VKFPCPNCG 34 (61)
T ss_pred cCCceeccCCCEeccCCce--------eEeeCCCCC
Confidence 4467899999988 66541 256777777
No 161
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=22.46 E-value=63 Score=27.71 Aligned_cols=15 Identities=33% Similarity=1.008 Sum_probs=12.1
Q ss_pred ccCCCceeCCCcCcc
Q 036712 447 DLEHIDYYCPNCRVK 461 (1020)
Q Consensus 447 ~l~~~~Y~Cp~C~~~ 461 (1020)
.|.+...+||.|+.-
T Consensus 23 ~LkNfPlyCpKCK~E 37 (55)
T PF14205_consen 23 VLKNFPLYCPKCKQE 37 (55)
T ss_pred eeccccccCCCCCce
Confidence 467888999999953
No 162
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=22.41 E-value=57 Score=26.61 Aligned_cols=34 Identities=35% Similarity=0.587 Sum_probs=21.3
Q ss_pred ccccCCCCCcCCCCccccccccccCcccchhhHhh
Q 036712 367 ARVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSKL 401 (1020)
Q Consensus 367 ~~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~l 401 (1020)
...|..|+.. |-.+.+++-....++.||..|+..
T Consensus 4 ~~~C~~C~~~-~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 4 GYTCDGCGTD-PIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SCE-SSS-SS-SEESSEEEESSSSS-EEEHHHHHH
T ss_pred CeECcCCCCC-cCcCCeEECCCCCCCchhhHHHhC
Confidence 4579999984 322335556666789999999976
No 163
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=22.14 E-value=65 Score=26.43 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=21.1
Q ss_pred cccCCCCCcCCCCccccccccccCcccchhhHh
Q 036712 368 RVCDGCGLFRPCKLKRMKGLVSETQFLCKHCSK 400 (1020)
Q Consensus 368 ~~C~~Cg~~~p~k~~~~~~~~~~~~~lC~~C~~ 400 (1020)
+.|++|+.. |-.+.+++=....++.||..|..
T Consensus 1 i~Cd~C~~~-~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 1 IICDTCRKQ-GIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCC-CcccCeEECCCCCCccchHHHhC
Confidence 479999953 33333445555667888888876
No 164
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=21.90 E-value=56 Score=29.88 Aligned_cols=38 Identities=26% Similarity=0.643 Sum_probs=29.3
Q ss_pred hhcCcCccccccccccCCCCCCceecCC--CCcEEcCcccccchh
Q 036712 401 LQKSEQYCGICKNIWHHSDSGNWVCCDG--CNVWVHAECDEISGK 443 (1020)
Q Consensus 401 l~~~g~~C~iC~k~y~~~d~~~wv~Cd~--C~~WvH~~C~~~~~~ 443 (1020)
....+..|.+|++. .+-.|+|.. |...||..|-..+.-
T Consensus 32 ~~~~~~~C~~C~~~-----~Ga~i~C~~~~C~~~fH~~CA~~~~~ 71 (90)
T PF13771_consen 32 KRRRKLKCSICKKK-----GGACIGCSHPGCSRSFHVPCARKAGC 71 (90)
T ss_pred HHHhCCCCcCCCCC-----CCeEEEEeCCCCCcEEChHHHccCCe
Confidence 34467789999863 467899985 999999999776554
No 165
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=20.89 E-value=58 Score=30.46 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=0.0
Q ss_pred ccccccccCC-CceeeecCCcccccccccccc
Q 036712 696 LKSCIICKQT-HGSCTQCCKCATYFHAMCASR 726 (1020)
Q Consensus 696 ~~~C~iC~~~-~Ga~IqC~~C~~~FHv~CAr~ 726 (1020)
...|.+|++. +...+-=.-|+..||..|+.+
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEecccccC
No 166
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.59 E-value=82 Score=36.72 Aligned_cols=44 Identities=23% Similarity=0.405 Sum_probs=28.2
Q ss_pred ccccccccCccCCCCcEEEcCCCCchhcCcccCCcccCCCCce--eeccCCC
Q 036712 593 ERCAICRWVEDWDYNKIIICNRCQIAVHQECYGVTDVQDFTSW--VCRACEM 642 (1020)
Q Consensus 593 ~~C~VC~~~e~~~~n~Ll~Cd~C~~~vH~~CYgv~~~p~~~~W--~C~~C~~ 642 (1020)
+.|+||.+.- .. ++.+-=--|.-.||..|.- |--..| +|+.|+.
T Consensus 230 ~~CaIClEdY-~~-GdklRiLPC~H~FH~~CID----pWL~~~r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDY-EK-GDKLRILPCSHKFHVNCID----PWLTQTRTFCPVCKR 275 (348)
T ss_pred ceEEEeeccc-cc-CCeeeEecCCCchhhccch----hhHhhcCccCCCCCC
Confidence 4899999742 23 3333337899999999951 111122 5999976
No 167
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=67 Score=40.53 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=30.9
Q ss_pred CccccCCCCCcCCC--Cc--cccccccccCcccchhhHhhhc---------CcCcccccccc
Q 036712 366 VARVCDGCGLFRPC--KL--KRMKGLVSETQFLCKHCSKLQK---------SEQYCGICKNI 414 (1020)
Q Consensus 366 ~~~~C~~Cg~~~p~--k~--~~~~~~~~~~~~lC~~C~~l~~---------~g~~C~iC~k~ 414 (1020)
.=+.|..||-|..- .. ++- +.+-.++.||+.|.+-|+ ....||+|+=-
T Consensus 122 PF~~CT~CGPRfTIi~alPYDR~-nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CGP~ 182 (750)
T COG0068 122 PFINCTNCGPRFTIIEALPYDRE-NTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCGPH 182 (750)
T ss_pred cccccCCCCcceeeeccCCCCcc-cCccccCcCCHHHHHHhcCccccccccccccCcccCCC
Confidence 34679999966421 11 222 223336999999998664 56778888753
No 168
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.36 E-value=71 Score=37.61 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=32.9
Q ss_pred CcccccCCC---CCCCeeEEEEEECCCeeEEEEEEccCCCCCCeEEEecCCCCCC
Q 036712 949 NIARLINHS---CMPNCYARIMSVGDCESRIVLIAKTNVSAGDELTYDYLFDPDE 1000 (1020)
Q Consensus 949 NiaRfINHS---C~PN~~~~~v~v~~~~~ri~l~A~RdI~~GEELT~DY~~~~~~ 1000 (1020)
-++-|+||- |+.|..+ +...+-++|.|+|++|+|+.-.|+..+.+
T Consensus 217 p~ad~lNhd~~k~nanl~y-------~~NcL~mva~r~iekgdev~n~dg~~p~~ 264 (466)
T KOG1338|consen 217 PIADFLNHDGLKANANLRY-------EDNCLEMVADRNIEKGDEVDNSDGLKPMG 264 (466)
T ss_pred chhhhhccchhhcccceec-------cCcceeeeecCCCCCccccccccccCcch
Confidence 357789995 5555433 13567789999999999999999755433
Done!