BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036714
(932 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 148/346 (42%), Gaps = 56/346 (16%)
Query: 142 KKVVEEIWEDL--MGDKVTKIGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQ 198
KK+V I + L + + + ++GM G GK+ + E + + E V WV++ +
Sbjct: 130 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189
Query: 199 ---PLYLIKLQT---------EIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDD 246
L+KLQ + L ++ E +D++R + ML+ + +LILDD
Sbjct: 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLR-----VLMLRKHPRSLLILDD 244
Query: 247 MWEAFRLEEVGIPEPSEENGCKLVVTTRSVGICRS-MGCKEVRV--QPLSNEEALNLFLD 303
+W+ + L+ +N C++++TTR + S MG K V L E+ L +
Sbjct: 245 VWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSL 297
Query: 304 KVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRG---- 359
V +P II +EC G PL + + +R D + W L +L+
Sbjct: 298 FVNMKKEDLPAEAHSII----KECKGSPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFK 351
Query: 360 RVRSLNGVDTEVFGR-LEFSYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFI 418
R+R + D E + S L+ E ++ + ++ +D +P L W E
Sbjct: 352 RIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--T 408
Query: 419 EEVKDVQAKYDRGHTILNRLVNCCLLESAKDGR--CVKMHDLIRDM 462
EEV+D IL VN LL ++G+ C +HDL D
Sbjct: 409 EEVED----------ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 141/327 (43%), Gaps = 56/327 (17%)
Query: 160 IGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQ---PLYLIKLQTEIATALKQ 215
+ + GM G GK+ + E + + E V WV+V + L+KLQ + T L Q
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQN-LCTRLDQ 208
Query: 216 ----------SLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEEN 265
++ E +D++R + ML+ + +LILDD+W+++ L+ ++
Sbjct: 209 DESFSQRLPLNIEEAKDRLR-----ILMLRKHPRSLLILDDVWDSWVLKAF-------DS 256
Query: 266 GCKLVVTTRSVGICRS-MGCKEVRV--QPLSNEEALNLFLDKVGSSTLQIPTLDKKIINL 322
C++++TTR + S MG K V L E+ L + V +P II
Sbjct: 257 QCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSII-- 314
Query: 323 VVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRG----RVRSLNGVDTEVFGR-LEF 377
+EC G PL + + +R D + W L +L+ R+R + D E +
Sbjct: 315 --KECKGSPLVVSLIGALLR--DFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSI 370
Query: 378 SYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNR 437
S L+ E ++ + ++ +D +P L W E EEV+D IL
Sbjct: 371 SVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCILWDME--TEEVED----------ILQE 417
Query: 438 LVNCCLLESAKDGRCVK--MHDLIRDM 462
VN LL ++G+ + +HDL D
Sbjct: 418 FVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 147/346 (42%), Gaps = 56/346 (16%)
Query: 142 KKVVEEIWEDL--MGDKVTKIGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQ 198
KK+V I + L + + + ++GM G GK+ + E + + E V WV++ +
Sbjct: 137 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 196
Query: 199 ---PLYLIKLQT---------EIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDD 246
L+KLQ + L ++ E +D++R + ML+ + +LILDD
Sbjct: 197 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLR-----VLMLRKHPRSLLILDD 251
Query: 247 MWEAFRLEEVGIPEPSEENGCKLVVTTRSVGICRS-MGCKEVRV--QPLSNEEALNLFLD 303
+W+ + L+ +N C++++TT + S MG K V L E+ L +
Sbjct: 252 VWDPWVLKAF-------DNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSL 304
Query: 304 KVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRG---- 359
V +P II +EC G PL + + +R D + W L +L+
Sbjct: 305 FVNMKKEDLPAEAHSII----KECKGSPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFK 358
Query: 360 RVRSLNGVDTEVFGR-LEFSYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFI 418
R+R + D E + S L+ E ++ + ++ +D +P L W E
Sbjct: 359 RIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--T 415
Query: 419 EEVKDVQAKYDRGHTILNRLVNCCLLESAKDGR--CVKMHDLIRDM 462
EEV+D IL VN LL ++G+ C +HDL D
Sbjct: 416 EEVED----------ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 141/327 (43%), Gaps = 56/327 (17%)
Query: 160 IGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQ---PLYLIKLQTEIATALKQ 215
+ + GM G GK+ + E + + E V WV+V + L+KLQ + T L Q
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQN-LCTRLDQ 214
Query: 216 ----------SLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEEN 265
++ E +D++R + ML+ + +LILDD+W+++ L+ ++
Sbjct: 215 DESFSQRLPLNIEEAKDRLR-----ILMLRKHPRSLLILDDVWDSWVLKAF-------DS 262
Query: 266 GCKLVVTTRSVGICRS-MGCKEVRV--QPLSNEEALNLFLDKVGSSTLQIPTLDKKIINL 322
C++++TTR + S MG K V L E+ L + V +P II
Sbjct: 263 QCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSII-- 320
Query: 323 VVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRG----RVRSLNGVDTEVFGR-LEF 377
+EC G PL + + +R D + W L +L+ R+R + D E +
Sbjct: 321 --KECKGSPLVVSLIGALLR--DFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSI 376
Query: 378 SYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNR 437
S L+ E ++ + ++ +D +P L W E EEV+D IL
Sbjct: 377 SVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCILWDME--TEEVED----------ILQE 423
Query: 438 LVNCCLLESAKDGRCVK--MHDLIRDM 462
VN LL ++G+ + +HDL D
Sbjct: 424 FVNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 26/129 (20%)
Query: 518 LSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSD-LMNLRSLLLRWCEN 576
L L L +N L +P F + L VL+L + VLPS+V D L++L+ L + C N
Sbjct: 66 LKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM--CCN 122
Query: 577 LERVPSXXXXXXXXXXXXEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNL 636
+ E+P G+E L +L+HL L +LK P G RL +L
Sbjct: 123 ---------------------KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 637 YKLKLSFGN 645
L FGN
Sbjct: 162 THAYL-FGN 169
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 542 GLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSXXXXXXXX----------X 591
GL+ L L+R ++ LP+S++ L LR L +R C L +P
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 592 XXXEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGI--LPRLRNL 636
E TGI +P + L+NL L + + L I LP+L L
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL ND+ E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 538 VYMHG 542
++HG
Sbjct: 200 AFLHG 204
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 491 KANLERVSLM----MNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVL 546
KANL++ S+ N++ I ++ + DI S +Q +P ++ + G K+
Sbjct: 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ------YLPNVRYLALGGNKLH 76
Query: 547 NLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSXX--XXXXXXXXXXEETGIEEVPE 604
++S ++ +L NL L+L L+ +P+ E ++ +P+
Sbjct: 77 DIS---------ALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 605 GM-EMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKL 641
G+ + L NL++LYL +L+ P G+ +L NL +L L
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 26/127 (20%)
Query: 518 LSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSD-LMNLRSLLLRWCEN 576
L+ L+L N L ++P F + LK L L ++ LP V D L NL L L
Sbjct: 87 LTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLY---- 141
Query: 577 LERVPSXXXXXXXXXXXXEETGIEEVPEGM-EMLENLSHLYLSSPRLKKFPTGILPRLRN 635
++ +P+G+ + L NL+ L L + +L+ P G+ +L
Sbjct: 142 -------------------HNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 636 LYKLKLS 642
L +L L+
Sbjct: 183 LKQLSLN 189
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 454 KMHDLIRDMALSITSESPSFMVKAGLRLQEFP-GKQEWKANLERVSLMMNDIEEIPSYMS 512
K+HD+ L+ + ++++ G +LQ P G + NL+ + L+ N ++ +P +
Sbjct: 74 KLHDISALKELT----NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 513 PHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSD-LMNLRSLLL 571
L+ L L N L ++P+ F + L L+L ++ LP V D L L+ L L
Sbjct: 130 DKLTNLTYLYLYHN-QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 572 RWCENLERVPSXXXXXXXXXXXXEETGIEEVPEGM-EMLENLSHLYL 617
+ ++ VP+G+ + L +L+H++L
Sbjct: 189 -----------------------NDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 24/170 (14%)
Query: 491 KANLERVSLM----MNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVL 546
KANL++ S+ N++ I ++ + DI S +Q +P ++ + G K+
Sbjct: 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ------YLPNVRYLALGGNKLH 76
Query: 547 NLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSXX--XXXXXXXXXXEETGIEEVPE 604
++S ++ +L NL L+L L+ +P+ E ++ +P+
Sbjct: 77 DIS---------ALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 605 GM-EMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGN-EALRETV 652
G+ + L NL++L L+ +L+ P G+ +L NL +L LS+ ++L E V
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 454 KMHDLIRDMALSITSESPSFMVKAGLRLQEFP-GKQEWKANLERVSLMMNDIEEIPSYMS 512
K+HD+ L+ + ++++ G +LQ P G + NL+ + L+ N ++ +P +
Sbjct: 74 KLHDISALKELT----NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 513 PHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSD-LMNLRSLLL 571
L+ L L A+ L ++P+ F + L L+LS ++ LP V D L L+ L L
Sbjct: 130 DKLTNLTYLNL-AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 572 RWCENLERVP 581
+ L+ VP
Sbjct: 189 -YQNQLKSVP 197
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL N++ E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 538 VYMHG 542
++HG
Sbjct: 200 AFLHG 204
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL N++ E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 538 VYMHG 542
++HG
Sbjct: 200 AFLHG 204
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL N++ E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 538 VYMHG 542
++HG
Sbjct: 200 AFLHG 204
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL N++ E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 538 VYMHG 542
++HG
Sbjct: 200 AFLHG 204
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL N++ E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 200
Query: 538 VYMHG 542
++HG
Sbjct: 201 AFLHG 205
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL N + E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 538 VYMHG 542
++HG
Sbjct: 200 AFLHG 204
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL N + E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 538 VYMHG 542
++HG
Sbjct: 200 AFLHG 204
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 8/168 (4%)
Query: 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRT 551
A+ +++ L N + +PS L L L N L T+P F + L+ L ++
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN 95
Query: 552 NIKVLPSSVSD-LMNLRSLLLRWCENLERVPSXXXXXXXXXXXXE--ETGIEEVPEGM-E 607
++ LP V D L+NL L L L+ +P ++ +P+G+ +
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 608 MLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEA 655
L +L L L + +LK+ P G +L L LKL N L+ E A
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD--NNQLKRVPEGA 200
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 10/185 (5%)
Query: 465 SITSESPSFMVKAGL---RLQEFPGKQEWK-ANLERVSLMMNDIEEIPSYMSPHCDILST 520
+I S P+ K L +L P K + L + L N ++ +P+ + L T
Sbjct: 30 AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89
Query: 521 LLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSD-LMNLRSLLLRWCENLER 579
L + N L +P F + L L L R +K LP V D L L L L + E L+
Sbjct: 90 LWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQS 147
Query: 580 VPSXXXXXXXXXXXXE--ETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNL 636
+P ++ VPEG + L L L L + +LK+ P G L L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 637 YKLKL 641
L+L
Sbjct: 208 KMLQL 212
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL N + E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 538 VYMHG 542
++HG
Sbjct: 200 AFLHG 204
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECF-------F 537
PG LE++SL N + E+P+ + + L TLLLQ N +L+TIP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 538 VYMHG 542
++HG
Sbjct: 200 AFLHG 204
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 26/147 (17%)
Query: 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRT 551
A + L N ++ +P+ + L+ L L N L ++P F + L LNLS
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86
Query: 552 NIKVLPSSVSD-LMNLRSLLLRWCENLERVPSXXXXXXXXXXXXEETGIEEVPEGM-EML 609
++ LP+ V D L L+ L L ++ +P+G+ + L
Sbjct: 87 QLQSLPNGVFDKLTQLKELAL-----------------------NTNQLQSLPDGVFDKL 123
Query: 610 ENLSHLYLSSPRLKKFPTGILPRLRNL 636
L L L +LK P G+ RL +L
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 595 EETGIEEVPEGM-EMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642
E ++ +P G+ + L +L+ LYL +L+ P G+ +L +L L LS
Sbjct: 36 ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 518 LSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSD-LMNLRSLLLRWCEN 576
L TL L AN L ++P F ++ L L L +K LPS V D L L+ L L
Sbjct: 85 LGTLGL-ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL----- 138
Query: 577 LERVPSXXXXXXXXXXXXEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRN 635
++ +P G + L NL L LS+ +L+ P G RL
Sbjct: 139 ------------------NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 636 LYKLKLSFGNE 646
L + L FGN+
Sbjct: 181 LQTITL-FGNQ 190
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 29/141 (20%)
Query: 504 IEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSV-SD 562
++ +PS + + L LQ+ G L T+ + F + L LNL ++ L + V D
Sbjct: 26 LDSVPSGIPADTEKLD---LQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 563 LMNLRSLLLRWCENLERVPSXXXXXXXXXXXXEETGIEEVPEGM-EMLENLSHLYLSSPR 621
L L +L L + +P G+ + L L LYL +
Sbjct: 82 LTELGTLGL-----------------------ANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 622 LKKFPTGILPRLRNLYKLKLS 642
LK P+G+ RL L +L+L+
Sbjct: 119 LKSLPSGVFDRLTKLKELRLN 139
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 518 LSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSD-LMNLRSLLLRWCEN 576
L TL L AN L ++P F ++ L L L +K LPS V D L L+ L L
Sbjct: 85 LGTLGL-ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL----- 138
Query: 577 LERVPSXXXXXXXXXXXXEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRN 635
++ +P G + L NL L LS+ +L+ P G RL
Sbjct: 139 ------------------NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 636 LYKLKLSFGNE 646
L + L FGN+
Sbjct: 181 LQTITL-FGNQ 190
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 29/141 (20%)
Query: 504 IEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSV-SD 562
++ +PS + + L LQ+ G L T+ + F + L LNL ++ L + V D
Sbjct: 26 LDSVPSGIPADTEKLD---LQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 563 LMNLRSLLLRWCENLERVPSXXXXXXXXXXXXEETGIEEVPEGM-EMLENLSHLYLSSPR 621
L L +L L + +P G+ + L L LYL +
Sbjct: 82 LTELGTLGL-----------------------ANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 622 LKKFPTGILPRLRNLYKLKLS 642
LK P+G+ RL L +L+L+
Sbjct: 119 LKSLPSGVFDRLTKLKELRLN 139
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 518 LSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENL 577
L L L N NL +P F G +L++SRT I LPS L NL+ L R NL
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNL 236
Query: 578 ERVPS 582
+++P+
Sbjct: 237 KKLPT 241
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 518 LSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENL 577
L L L N NL +P F G +L++SRT I LPS L NL+ L R NL
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNL 236
Query: 578 ERVPS 582
+++P+
Sbjct: 237 KKLPT 241
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLS-R 550
A+ +R+ L N I +P+ C L+ L L +N L I F + L+ L+LS
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNA-LAGIDAAAFTGLTLLEQLDLSDN 89
Query: 551 TNIKVL-PSSVSDLMNLRSLLLRWCENLERVPSXXX-XXXXXXXXXEETGIEEVPEG-ME 607
++V+ P++ L +L +L L C E P ++ ++ +P+
Sbjct: 90 AQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 608 MLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKL 641
L NL+HL+L R+ P L +L +L L
Sbjct: 150 DLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLL 183
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 519 STLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSV-SDLMNLRSLLLRWCENL 577
+TL+ +++ I +HGLK + + +P+++ +D+ NL L LR N+
Sbjct: 101 TTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELR--ANI 158
Query: 578 ERVPSXXXXXXXXXXXXEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLY 637
E +PS + LENL + S +L++ P GI ++ L
Sbjct: 159 EEMPSHL---------------------FDDLENLESIEFGSNKLRQMPRGIFGKMPKLK 197
Query: 638 KLKLS 642
+L L+
Sbjct: 198 QLNLA 202
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 185 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 220
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 158 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 193
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 147 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 182
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 158 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 193
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 152 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 187
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 147 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 182
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 142 KKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY 201
+++ E + L G+K + ++G+ G GKT + + + RL+ + V++ +P+Y
Sbjct: 29 RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLV-----KPIY 83
Query: 202 LIKLQTE----IATALKQSL 217
+ E +A+A+ +++
Sbjct: 84 VNARHRETPYRVASAIAEAV 103
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
K KIG++G G+GKT +++E+ N + +E +V V
Sbjct: 143 KGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGV 181
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 603 PEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642
P + L NL LY +S +L PTG+ +L L +L L+
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 198 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 236
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 599 IEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKL 641
I+ +P+ + LE L L ++S +LK P GI RL +L K+ L
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 150 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 188
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 33/73 (45%)
Query: 486 GKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKV 545
G E+ + L + L N IE IPSY L L L L I E F + LK
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200
Query: 546 LNLSRTNIKVLPS 558
LNL NIK +P+
Sbjct: 201 LNLGMCNIKDMPN 213
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 140 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 178
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 480 RLQEFPGKQ-EWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFV 538
RL P + E+ + L + L N IE IPSY L L L L I E F
Sbjct: 94 RLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 539 YMHGLKVLNLSRTNIKVLPS 558
+ L+ LNL N+K +P+
Sbjct: 154 GLVNLRYLNLGMCNLKDIPN 173
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 75/185 (40%), Gaps = 33/185 (17%)
Query: 479 LRLQEFPGK-----QEWKANLERVSLMMNDIEE--IPSYMSPHCDILSTLLLQANGNLWT 531
L EF G+ A+L + L N+ +P+ + L L LQ NG
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 532 IPECF-----FVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLE-RVPSXXX 585
IP V +H L LS T +PSS+ L LR L L W LE +P
Sbjct: 407 IPPTLSNCSELVSLH-LSFNYLSGT----IPSSLGSLSKLRDLKL-WLNMLEGEIPQELM 460
Query: 586 XXXXXXXX----XEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILP----RLRNLY 637
+ TG E+P G+ NL+ + LS+ RL TG +P RL NL
Sbjct: 461 YVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNRL----TGEIPKWIGRLENLA 514
Query: 638 KLKLS 642
LKLS
Sbjct: 515 ILKLS 519
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 480 RLQEFPGKQ-EWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFV 538
RL P + E+ + L + L N IE IPSY L L L L I E F
Sbjct: 94 RLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 539 YMHGLKVLNLSRTNIKVLPS 558
+ L+ LNL N+K +P+
Sbjct: 154 GLVNLRYLNLGMCNLKDIPN 173
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 75/185 (40%), Gaps = 33/185 (17%)
Query: 479 LRLQEFPGK-----QEWKANLERVSLMMNDIEE--IPSYMSPHCDILSTLLLQANGNLWT 531
L EF G+ A+L + L N+ +P+ + L L LQ NG
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 532 IPECF-----FVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLE-RVPSXXX 585
IP V +H L LS T +PSS+ L LR L L W LE +P
Sbjct: 410 IPPTLSNCSELVSLH-LSFNYLSGT----IPSSLGSLSKLRDLKL-WLNMLEGEIPQELM 463
Query: 586 XXXXXXXX----XEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILP----RLRNLY 637
+ TG E+P G+ NL+ + LS+ RL TG +P RL NL
Sbjct: 464 YVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNRL----TGEIPKWIGRLENLA 517
Query: 638 KLKLS 642
LKLS
Sbjct: 518 ILKLS 522
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 603 PEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642
P L NL L L S RLK P G+ L NL KL +S
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,480,276
Number of Sequences: 62578
Number of extensions: 1013642
Number of successful extensions: 3206
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 3134
Number of HSP's gapped (non-prelim): 101
length of query: 932
length of database: 14,973,337
effective HSP length: 108
effective length of query: 824
effective length of database: 8,214,913
effective search space: 6769088312
effective search space used: 6769088312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)