Query 036714
Match_columns 932
No_of_seqs 562 out of 5462
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:46:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.5E-87 7.7E-92 790.1 49.1 815 6-902 9-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.7E-61 1E-65 601.8 50.1 654 134-862 184-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.8E-42 6.1E-47 371.7 17.8 276 142-420 2-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 8.5E-21 1.8E-25 239.5 18.0 176 493-671 189-367 (968)
5 KOG0444 Cytoskeletal regulator 99.8 2.2E-23 4.8E-28 222.5 -5.8 337 473-861 36-379 (1255)
6 PLN00113 leucine-rich repeat r 99.8 1.2E-20 2.7E-25 238.0 17.9 186 485-673 157-345 (968)
7 KOG4194 Membrane glycoprotein 99.8 5.6E-22 1.2E-26 211.0 1.5 319 480-867 113-439 (873)
8 KOG4194 Membrane glycoprotein 99.8 2.7E-20 5.8E-25 198.3 9.5 350 493-869 53-420 (873)
9 PLN03210 Resistant to P. syrin 99.8 8.1E-19 1.7E-23 221.3 18.1 338 491-861 588-947 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 1.8E-20 3.9E-25 200.5 -4.7 345 493-869 8-363 (1255)
11 KOG0472 Leucine-rich repeat pr 99.6 2.7E-18 5.9E-23 175.5 -6.4 360 480-855 148-539 (565)
12 KOG0618 Serine/threonine phosp 99.6 3E-17 6.4E-22 184.9 -6.5 110 494-606 23-133 (1081)
13 KOG0472 Leucine-rich repeat pr 99.6 1E-16 2.3E-21 164.1 -2.8 324 480-829 194-539 (565)
14 PRK15387 E3 ubiquitin-protein 99.5 6.2E-14 1.3E-18 164.0 12.5 251 497-829 206-456 (788)
15 KOG0617 Ras suppressor protein 99.5 9E-16 2E-20 139.2 -3.5 147 492-642 33-181 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 2.3E-13 4.9E-18 159.4 14.8 247 478-789 210-456 (788)
17 KOG0617 Ras suppressor protein 99.5 1.1E-15 2.3E-20 138.7 -3.5 156 514-676 31-189 (264)
18 PRK04841 transcriptional regul 99.5 5.8E-12 1.3E-16 158.5 25.7 291 133-468 13-333 (903)
19 PRK15370 E3 ubiquitin-protein 99.4 7.8E-13 1.7E-17 156.1 9.3 132 494-642 180-312 (754)
20 KOG0618 Serine/threonine phosp 99.4 7.1E-14 1.5E-18 158.1 0.2 142 497-642 3-145 (1081)
21 PRK15370 E3 ubiquitin-protein 99.4 1.4E-12 3E-17 154.0 10.2 171 478-672 187-358 (754)
22 KOG4237 Extracellular matrix p 99.4 4.8E-14 1E-18 144.8 -2.0 139 500-642 54-196 (498)
23 KOG4237 Extracellular matrix p 99.4 1.8E-13 3.8E-18 140.7 1.7 195 476-675 53-337 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.3 4.8E-13 1E-17 160.3 4.0 298 493-863 546-866 (889)
25 COG2909 MalT ATP-dependent tra 99.3 2.4E-10 5.2E-15 129.8 22.4 296 131-470 16-341 (894)
26 TIGR03015 pepcterm_ATPase puta 99.1 7.7E-09 1.7E-13 110.2 23.0 182 155-341 41-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.1 3.6E-08 7.8E-13 110.1 28.8 294 134-447 15-350 (365)
28 PRK00411 cdc6 cell division co 99.1 2.3E-08 5.1E-13 112.8 26.0 292 134-447 30-358 (394)
29 TIGR00635 ruvB Holliday juncti 99.1 3.3E-09 7.2E-14 115.1 18.3 275 134-450 4-292 (305)
30 PRK00080 ruvB Holliday junctio 99.1 1.6E-09 3.4E-14 118.3 15.7 275 134-450 25-313 (328)
31 PF01637 Arch_ATPase: Archaeal 99.1 3.3E-10 7.2E-15 118.0 8.6 193 136-336 1-233 (234)
32 cd00116 LRR_RI Leucine-rich re 99.0 7.3E-11 1.6E-15 129.4 1.5 155 513-672 20-205 (319)
33 PF05729 NACHT: NACHT domain 99.0 2.4E-09 5.2E-14 104.9 11.7 143 158-306 1-164 (166)
34 KOG4341 F-box protein containi 99.0 2.8E-11 6.1E-16 125.9 -4.5 298 542-913 139-461 (483)
35 COG3899 Predicted ATPase [Gene 98.9 6.7E-08 1.5E-12 117.0 18.7 311 135-470 1-389 (849)
36 cd00116 LRR_RI Leucine-rich re 98.8 6.1E-10 1.3E-14 122.1 0.8 137 535-673 17-178 (319)
37 KOG0532 Leucine-rich repeat (L 98.8 9.8E-11 2.1E-15 126.2 -5.3 155 481-642 87-242 (722)
38 KOG0532 Leucine-rich repeat (L 98.8 7.5E-10 1.6E-14 119.5 -0.7 130 492-627 121-251 (722)
39 KOG2120 SCF ubiquitin ligase, 98.7 8.2E-10 1.8E-14 109.9 -3.4 180 589-829 187-374 (419)
40 PF14580 LRR_9: Leucine-rich r 98.7 1.4E-08 2.9E-13 97.9 5.0 103 516-622 19-125 (175)
41 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.4E-13 98.6 4.2 121 493-618 20-148 (175)
42 PRK06893 DNA replication initi 98.7 2E-07 4.4E-12 95.8 12.2 174 134-339 16-205 (229)
43 PTZ00112 origin recognition co 98.6 5.3E-06 1.2E-10 95.9 24.2 204 134-341 755-986 (1164)
44 PRK13342 recombination factor 98.6 5.5E-07 1.2E-11 101.4 16.5 176 134-339 12-198 (413)
45 KOG1259 Nischarin, modulator o 98.6 6.1E-09 1.3E-13 103.7 -0.3 130 493-627 285-416 (490)
46 COG2256 MGS1 ATPase related to 98.6 1.9E-06 4.1E-11 90.7 16.7 222 134-383 24-264 (436)
47 KOG3207 Beta-tubulin folding c 98.5 1.3E-08 2.9E-13 106.9 -0.7 84 586-673 196-284 (505)
48 KOG4341 F-box protein containi 98.5 5.4E-09 1.2E-13 109.2 -3.8 118 732-861 321-443 (483)
49 PRK07003 DNA polymerase III su 98.5 4.9E-06 1.1E-10 95.8 19.1 181 134-337 16-221 (830)
50 KOG3207 Beta-tubulin folding c 98.5 2.6E-08 5.6E-13 104.8 -0.1 179 492-671 146-337 (505)
51 TIGR03420 DnaA_homol_Hda DnaA 98.5 7.5E-07 1.6E-11 92.1 10.4 174 134-339 15-203 (226)
52 KOG1259 Nischarin, modulator o 98.4 1.4E-08 3E-13 101.1 -3.1 122 516-642 284-407 (490)
53 PRK12402 replication factor C 98.4 3.6E-06 7.7E-11 93.0 14.6 196 134-336 15-225 (337)
54 PF13173 AAA_14: AAA domain 98.4 7.7E-07 1.7E-11 82.5 7.4 118 158-297 3-127 (128)
55 COG4886 Leucine-rich repeat (L 98.4 1.6E-07 3.5E-12 106.1 3.2 171 493-672 117-289 (394)
56 PF13401 AAA_22: AAA domain; P 98.4 1E-06 2.2E-11 82.3 8.1 117 157-275 4-125 (131)
57 cd00009 AAA The AAA+ (ATPases 98.4 2.8E-06 6.1E-11 81.1 11.2 120 142-277 4-131 (151)
58 PRK14949 DNA polymerase III su 98.4 5.9E-06 1.3E-10 97.1 15.3 181 134-337 16-220 (944)
59 PRK14961 DNA polymerase III su 98.3 8.5E-06 1.8E-10 90.0 15.8 176 134-336 16-219 (363)
60 COG4886 Leucine-rich repeat (L 98.3 3.9E-07 8.5E-12 102.9 5.4 160 478-642 125-285 (394)
61 PRK05564 DNA polymerase III su 98.3 1.1E-05 2.4E-10 87.4 16.5 175 134-335 4-188 (313)
62 PLN03025 replication factor C 98.3 8.7E-06 1.9E-10 88.5 15.1 180 134-335 13-198 (319)
63 COG3903 Predicted ATPase [Gene 98.3 7.2E-07 1.6E-11 94.5 6.3 295 157-470 14-317 (414)
64 PRK04195 replication factor C 98.3 2.3E-05 5.1E-10 90.1 19.2 180 134-342 14-207 (482)
65 PRK12323 DNA polymerase III su 98.3 6.4E-06 1.4E-10 93.7 14.0 177 134-337 16-225 (700)
66 PRK14960 DNA polymerase III su 98.3 7.5E-06 1.6E-10 93.4 14.0 180 134-336 15-218 (702)
67 COG1474 CDC6 Cdc6-related prot 98.3 5.2E-05 1.1E-09 82.8 20.1 201 134-339 17-240 (366)
68 PRK14963 DNA polymerase III su 98.3 1.3E-05 2.9E-10 91.3 15.9 178 134-335 14-215 (504)
69 cd01128 rho_factor Transcripti 98.3 1.9E-06 4.1E-11 88.7 8.1 92 156-249 15-114 (249)
70 PRK00440 rfc replication facto 98.3 1.6E-05 3.6E-10 87.0 16.1 180 134-337 17-203 (319)
71 PF05496 RuvB_N: Holliday junc 98.3 1.2E-05 2.6E-10 79.3 13.1 173 134-342 24-226 (233)
72 KOG2028 ATPase related to the 98.3 1.7E-05 3.6E-10 81.8 14.1 176 134-333 138-332 (554)
73 PRK06645 DNA polymerase III su 98.2 1.6E-05 3.5E-10 90.2 15.3 179 134-335 21-227 (507)
74 TIGR02903 spore_lon_C ATP-depe 98.2 6.8E-05 1.5E-09 88.2 21.1 199 134-339 154-397 (615)
75 PRK14956 DNA polymerase III su 98.2 7.4E-06 1.6E-10 90.9 11.3 189 134-335 18-220 (484)
76 PRK09087 hypothetical protein; 98.2 1.8E-05 4E-10 80.8 13.5 140 157-337 44-195 (226)
77 PTZ00202 tuzin; Provisional 98.2 5.7E-05 1.2E-09 81.3 17.1 165 128-304 256-433 (550)
78 PRK07471 DNA polymerase III su 98.2 3.7E-05 8E-10 84.1 16.2 195 134-337 19-238 (365)
79 PRK14962 DNA polymerase III su 98.2 2.6E-05 5.6E-10 88.2 15.5 184 134-340 14-222 (472)
80 KOG2120 SCF ubiquitin ligase, 98.2 7E-08 1.5E-12 96.4 -4.7 182 611-856 186-375 (419)
81 PRK09376 rho transcription ter 98.2 6.2E-06 1.4E-10 88.2 9.3 91 157-249 169-267 (416)
82 PRK08084 DNA replication initi 98.2 1.4E-05 3.1E-10 82.4 11.7 170 136-339 25-211 (235)
83 PF13191 AAA_16: AAA ATPase do 98.2 4.3E-06 9.3E-11 83.4 7.5 48 135-184 1-51 (185)
84 PRK08691 DNA polymerase III su 98.1 2.9E-05 6.3E-10 89.6 14.5 181 134-337 16-220 (709)
85 PRK14957 DNA polymerase III su 98.1 3.9E-05 8.5E-10 87.6 15.3 181 134-337 16-221 (546)
86 PRK07940 DNA polymerase III su 98.1 4.4E-05 9.4E-10 84.3 15.2 175 134-337 5-213 (394)
87 PF13855 LRR_8: Leucine rich r 98.1 1.6E-06 3.4E-11 68.4 2.6 57 517-574 2-59 (61)
88 PRK13341 recombination factor 98.1 2.4E-05 5.1E-10 92.8 13.6 173 134-335 28-215 (725)
89 PRK14964 DNA polymerase III su 98.1 4E-05 8.7E-10 86.2 14.7 178 134-334 13-214 (491)
90 PRK08727 hypothetical protein; 98.1 2.4E-05 5.2E-10 80.7 12.0 168 134-334 19-201 (233)
91 PF13855 LRR_8: Leucine rich r 98.1 2.4E-06 5.2E-11 67.4 3.4 60 493-553 2-61 (61)
92 PF14516 AAA_35: AAA-like doma 98.1 0.0012 2.6E-08 71.9 25.5 201 131-344 8-246 (331)
93 PLN03150 hypothetical protein; 98.1 4.7E-06 1E-10 98.7 7.3 81 543-623 420-503 (623)
94 TIGR00678 holB DNA polymerase 98.1 5.5E-05 1.2E-09 75.5 13.9 159 147-333 3-187 (188)
95 PRK09112 DNA polymerase III su 98.1 6.2E-05 1.4E-09 81.9 15.1 195 134-338 23-241 (351)
96 PRK07994 DNA polymerase III su 98.1 5.7E-05 1.2E-09 87.7 15.2 191 134-337 16-220 (647)
97 PLN03150 hypothetical protein; 98.1 6.2E-06 1.3E-10 97.7 7.5 104 517-621 419-526 (623)
98 TIGR02397 dnaX_nterm DNA polym 98.1 9.3E-05 2E-09 82.3 16.4 182 133-338 13-219 (355)
99 PRK05642 DNA replication initi 98.0 7E-05 1.5E-09 77.2 13.8 150 158-339 46-210 (234)
100 PRK14958 DNA polymerase III su 98.0 5.4E-05 1.2E-09 86.6 14.0 180 134-336 16-219 (509)
101 PRK14955 DNA polymerase III su 98.0 5.8E-05 1.3E-09 84.5 13.9 198 133-336 15-227 (397)
102 PF00308 Bac_DnaA: Bacterial d 98.0 6.7E-05 1.5E-09 76.4 12.9 159 157-336 34-207 (219)
103 PRK14087 dnaA chromosomal repl 98.0 7.7E-05 1.7E-09 84.3 14.3 187 136-339 118-321 (450)
104 PRK14970 DNA polymerase III su 98.0 0.00013 2.8E-09 81.4 15.9 179 133-334 16-206 (367)
105 PRK14951 DNA polymerase III su 98.0 9.4E-05 2E-09 85.7 15.1 177 134-337 16-225 (618)
106 PRK15386 type III secretion pr 98.0 2E-05 4.3E-10 85.4 8.9 73 538-621 49-123 (426)
107 TIGR00767 rho transcription te 98.0 2.2E-05 4.8E-10 84.6 8.9 91 157-249 168-266 (415)
108 PRK14969 DNA polymerase III su 98.0 0.0001 2.2E-09 85.1 14.9 178 134-334 16-217 (527)
109 PRK05896 DNA polymerase III su 98.0 7.8E-05 1.7E-09 85.2 13.4 177 134-333 16-216 (605)
110 PRK08903 DnaA regulatory inact 97.9 8.4E-05 1.8E-09 76.7 12.1 172 134-341 18-203 (227)
111 TIGR01242 26Sp45 26S proteasom 97.9 7.8E-05 1.7E-09 82.7 12.5 170 134-331 122-328 (364)
112 TIGR02881 spore_V_K stage V sp 97.9 0.00012 2.5E-09 77.3 12.6 133 157-308 42-194 (261)
113 KOG0531 Protein phosphatase 1, 97.9 1.7E-06 3.8E-11 97.8 -1.4 122 516-642 72-194 (414)
114 PRK14959 DNA polymerase III su 97.9 0.00044 9.5E-09 79.7 17.7 185 134-341 16-225 (624)
115 PRK14971 DNA polymerase III su 97.9 0.00024 5.1E-09 83.3 15.8 178 134-335 17-220 (614)
116 PRK07764 DNA polymerase III su 97.9 0.00018 3.9E-09 86.6 14.9 177 134-334 15-218 (824)
117 PF05621 TniB: Bacterial TniB 97.9 0.00029 6.2E-09 73.1 14.3 199 134-336 34-260 (302)
118 PRK08451 DNA polymerase III su 97.8 0.00037 8E-09 79.3 16.2 182 134-338 14-219 (535)
119 PRK07133 DNA polymerase III su 97.8 0.00026 5.6E-09 82.8 15.0 177 133-336 17-218 (725)
120 PRK06305 DNA polymerase III su 97.8 0.00035 7.7E-09 79.0 15.4 178 133-334 16-219 (451)
121 PRK14952 DNA polymerase III su 97.8 0.00035 7.6E-09 80.8 15.4 181 134-337 13-220 (584)
122 TIGR02639 ClpA ATP-dependent C 97.8 0.00016 3.5E-09 87.5 13.3 153 134-305 182-358 (731)
123 PRK09111 DNA polymerase III su 97.8 0.00032 7E-09 81.6 15.1 195 134-337 24-233 (598)
124 COG2255 RuvB Holliday junction 97.8 0.0029 6.3E-08 64.0 19.1 171 134-339 26-225 (332)
125 CHL00181 cbbX CbbX; Provisiona 97.8 0.0005 1.1E-08 73.0 14.6 131 158-307 60-211 (287)
126 TIGR00362 DnaA chromosomal rep 97.8 0.00056 1.2E-08 77.2 16.1 179 136-335 113-308 (405)
127 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00037 8.1E-09 85.0 15.2 179 134-330 187-389 (852)
128 PRK14954 DNA polymerase III su 97.7 0.00055 1.2E-08 79.8 15.9 195 133-333 15-224 (620)
129 PRK15386 type III secretion pr 97.7 9.6E-05 2.1E-09 80.2 8.8 127 493-642 53-185 (426)
130 TIGR02880 cbbX_cfxQ probable R 97.7 0.00013 2.8E-09 77.5 9.7 131 159-307 60-210 (284)
131 PRK14950 DNA polymerase III su 97.7 0.00056 1.2E-08 80.4 15.9 194 133-338 15-222 (585)
132 PRK14953 DNA polymerase III su 97.7 0.00064 1.4E-08 77.5 15.8 181 134-338 16-221 (486)
133 KOG1909 Ran GTPase-activating 97.7 3.3E-06 7.2E-11 86.9 -2.6 93 752-855 213-309 (382)
134 KOG1859 Leucine-rich repeat pr 97.7 2.5E-06 5.4E-11 95.3 -3.8 126 542-672 165-291 (1096)
135 PF12799 LRR_4: Leucine Rich r 97.7 2.9E-05 6.4E-10 56.0 3.0 41 587-627 1-41 (44)
136 KOG3665 ZYG-1-like serine/thre 97.7 2.1E-05 4.5E-10 92.9 3.3 130 492-623 122-263 (699)
137 PRK06620 hypothetical protein; 97.7 0.00026 5.6E-09 71.7 10.8 157 134-335 17-187 (214)
138 PRK14088 dnaA chromosomal repl 97.7 0.0006 1.3E-08 77.1 14.8 180 136-335 108-303 (440)
139 KOG1859 Leucine-rich repeat pr 97.7 4.2E-06 9.2E-11 93.5 -2.5 105 565-676 165-270 (1096)
140 PRK06647 DNA polymerase III su 97.7 0.0008 1.7E-08 78.0 15.8 180 134-337 16-220 (563)
141 KOG0989 Replication factor C, 97.7 0.00031 6.7E-09 71.6 10.5 185 134-339 36-232 (346)
142 PRK03992 proteasome-activating 97.7 0.0005 1.1E-08 76.6 13.5 170 134-331 131-337 (389)
143 PRK11331 5-methylcytosine-spec 97.6 0.00027 5.8E-09 77.8 10.7 108 134-250 175-284 (459)
144 KOG2227 Pre-initiation complex 97.6 0.0038 8.2E-08 67.6 18.9 193 132-331 148-362 (529)
145 PRK14948 DNA polymerase III su 97.6 0.0013 2.7E-08 77.3 16.0 194 134-338 16-223 (620)
146 PHA02544 44 clamp loader, smal 97.6 0.00045 9.7E-09 75.4 11.7 143 134-302 21-170 (316)
147 PRK14086 dnaA chromosomal repl 97.6 0.002 4.4E-08 74.0 17.2 157 158-335 315-486 (617)
148 PRK00149 dnaA chromosomal repl 97.6 0.00078 1.7E-08 77.0 14.0 201 136-357 125-349 (450)
149 PF00004 AAA: ATPase family as 97.6 0.00026 5.6E-09 66.0 8.3 68 160-249 1-69 (132)
150 KOG2982 Uncharacterized conser 97.6 5.6E-05 1.2E-09 76.1 3.6 71 750-836 197-267 (418)
151 PRK14965 DNA polymerase III su 97.6 0.00087 1.9E-08 78.4 14.0 180 134-337 16-221 (576)
152 KOG2982 Uncharacterized conser 97.5 4.9E-05 1.1E-09 76.5 2.5 86 538-623 68-159 (418)
153 PRK05563 DNA polymerase III su 97.5 0.0021 4.6E-08 74.9 16.4 174 134-335 16-218 (559)
154 COG3267 ExeA Type II secretory 97.5 0.005 1.1E-07 61.7 16.3 182 154-340 48-248 (269)
155 KOG4579 Leucine-rich repeat (L 97.5 2E-05 4.3E-10 70.2 -0.4 85 541-626 53-139 (177)
156 CHL00095 clpC Clp protease ATP 97.5 0.00037 8.1E-09 85.4 10.1 155 134-304 179-353 (821)
157 KOG2543 Origin recognition com 97.5 0.0012 2.7E-08 69.3 12.0 160 134-304 6-192 (438)
158 TIGR00602 rad24 checkpoint pro 97.4 0.00067 1.5E-08 79.0 11.1 197 134-341 84-327 (637)
159 PRK07399 DNA polymerase III su 97.4 0.0027 5.8E-08 68.3 14.9 195 134-337 4-221 (314)
160 PF12799 LRR_4: Leucine Rich r 97.4 8.2E-05 1.8E-09 53.6 2.1 33 542-574 2-34 (44)
161 smart00382 AAA ATPases associa 97.4 0.00044 9.6E-09 65.2 7.8 89 158-251 3-91 (148)
162 KOG1909 Ran GTPase-activating 97.4 3.9E-05 8.5E-10 79.2 0.4 66 607-673 154-226 (382)
163 PF05673 DUF815: Protein of un 97.4 0.0091 2E-07 60.2 17.0 50 131-182 24-77 (249)
164 PRK08181 transposase; Validate 97.4 0.0065 1.4E-07 63.5 16.8 83 145-249 96-178 (269)
165 PTZ00361 26 proteosome regulat 97.4 0.0012 2.5E-08 73.8 11.8 149 157-331 217-389 (438)
166 PRK12422 chromosomal replicati 97.4 0.003 6.5E-08 71.3 15.1 151 158-331 142-307 (445)
167 KOG3665 ZYG-1-like serine/thre 97.4 8.6E-05 1.9E-09 87.8 2.6 126 516-642 122-258 (699)
168 KOG0531 Protein phosphatase 1, 97.4 2.5E-05 5.3E-10 88.5 -1.9 102 493-600 96-199 (414)
169 PTZ00454 26S protease regulato 97.3 0.0046 1E-07 68.6 15.5 150 157-332 179-352 (398)
170 COG1373 Predicted ATPase (AAA+ 97.3 0.0017 3.6E-08 72.5 12.0 159 144-336 25-191 (398)
171 PRK05707 DNA polymerase III su 97.3 0.003 6.6E-08 68.2 13.5 152 157-337 22-203 (328)
172 CHL00176 ftsH cell division pr 97.3 0.0024 5.1E-08 75.1 13.6 172 134-331 183-388 (638)
173 PRK08118 topology modulation p 97.3 0.00014 3E-09 70.7 2.8 37 158-194 2-38 (167)
174 TIGR03689 pup_AAA proteasome A 97.3 0.0023 4.9E-08 72.6 12.6 158 134-307 182-380 (512)
175 PRK10865 protein disaggregatio 97.3 0.0021 4.6E-08 78.8 13.3 155 134-305 178-354 (857)
176 PRK11034 clpA ATP-dependent Cl 97.3 0.00081 1.8E-08 80.4 9.4 154 134-305 186-362 (758)
177 COG0593 DnaA ATPase involved i 97.3 0.0046 1E-07 67.5 14.3 140 156-314 112-266 (408)
178 KOG0741 AAA+-type ATPase [Post 97.2 0.0034 7.3E-08 68.6 12.6 156 157-340 538-715 (744)
179 PRK08116 hypothetical protein; 97.2 0.00077 1.7E-08 70.8 7.8 101 158-275 115-220 (268)
180 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0017 3.8E-08 79.9 11.9 152 134-305 173-349 (852)
181 PF04665 Pox_A32: Poxvirus A32 97.2 0.0011 2.5E-08 67.1 8.1 36 158-196 14-49 (241)
182 KOG2035 Replication factor C, 97.1 0.012 2.7E-07 59.2 14.1 229 136-383 15-283 (351)
183 TIGR01241 FtsH_fam ATP-depende 97.1 0.01 2.2E-07 68.8 15.8 172 134-331 55-260 (495)
184 KOG4579 Leucine-rich repeat (L 97.1 0.00011 2.5E-09 65.5 -0.3 80 493-574 54-133 (177)
185 PRK12608 transcription termina 97.1 0.0035 7.7E-08 67.5 10.8 103 145-249 120-231 (380)
186 TIGR00763 lon ATP-dependent pr 97.0 0.028 6.1E-07 68.7 19.4 46 134-181 320-371 (775)
187 PRK10536 hypothetical protein; 97.0 0.0048 1E-07 62.9 10.6 55 135-194 56-110 (262)
188 KOG0991 Replication factor C, 97.0 0.0019 4.1E-08 63.0 7.2 99 134-250 27-125 (333)
189 KOG1644 U2-associated snRNP A' 97.0 0.00099 2.2E-08 63.8 5.0 98 544-642 45-148 (233)
190 PRK08769 DNA polymerase III su 97.0 0.021 4.5E-07 61.3 15.5 173 142-337 10-208 (319)
191 COG1223 Predicted ATPase (AAA+ 97.0 0.0052 1.1E-07 61.1 9.9 172 134-331 121-319 (368)
192 PRK10787 DNA-binding ATP-depen 96.9 0.019 4.2E-07 69.5 16.2 46 134-181 322-373 (784)
193 PRK08058 DNA polymerase III su 96.9 0.016 3.5E-07 63.1 14.2 144 135-303 6-180 (329)
194 PRK07261 topology modulation p 96.9 0.0016 3.5E-08 63.5 5.8 36 159-194 2-37 (171)
195 PRK09183 transposase/IS protei 96.9 0.017 3.6E-07 60.5 13.6 25 157-181 102-126 (259)
196 PRK12377 putative replication 96.8 0.0014 2.9E-08 67.6 5.1 73 157-248 101-173 (248)
197 PRK06871 DNA polymerase III su 96.8 0.043 9.2E-07 59.0 16.5 174 144-334 10-200 (325)
198 cd01120 RecA-like_NTPases RecA 96.8 0.0046 9.9E-08 59.9 8.6 40 159-201 1-40 (165)
199 PF00448 SRP54: SRP54-type pro 96.8 0.0065 1.4E-07 60.5 9.6 88 157-247 1-92 (196)
200 COG0542 clpA ATP-binding subun 96.8 0.021 4.5E-07 67.3 14.8 60 134-198 491-559 (786)
201 KOG1947 Leucine rich repeat pr 96.8 0.00023 5.1E-09 82.9 -1.2 109 563-671 187-306 (482)
202 TIGR02237 recomb_radB DNA repa 96.7 0.0071 1.5E-07 61.4 9.6 47 157-207 12-58 (209)
203 TIGR02640 gas_vesic_GvpN gas v 96.7 0.035 7.6E-07 58.4 14.7 57 142-206 8-64 (262)
204 PF02562 PhoH: PhoH-like prote 96.7 0.0023 5E-08 63.4 5.4 46 147-195 11-56 (205)
205 PRK07993 DNA polymerase III su 96.7 0.042 9.2E-07 59.6 15.6 166 143-335 9-202 (334)
206 KOG1644 U2-associated snRNP A' 96.7 0.0023 5E-08 61.4 4.8 78 494-574 44-123 (233)
207 PF13177 DNA_pol3_delta2: DNA 96.7 0.011 2.4E-07 57.1 9.6 118 142-277 3-143 (162)
208 PRK06921 hypothetical protein; 96.7 0.0038 8.2E-08 65.5 6.9 39 156-196 116-154 (266)
209 PF13207 AAA_17: AAA domain; P 96.6 0.0018 3.9E-08 59.3 3.8 23 159-181 1-23 (121)
210 COG1222 RPT1 ATP-dependent 26S 96.6 0.034 7.4E-07 58.5 13.3 160 156-341 184-371 (406)
211 KOG0743 AAA+-type ATPase [Post 96.5 0.069 1.5E-06 58.2 15.4 167 158-360 236-434 (457)
212 CHL00195 ycf46 Ycf46; Provisio 96.5 0.013 2.9E-07 66.6 10.6 151 157-331 259-429 (489)
213 PRK06526 transposase; Provisio 96.5 0.0023 5.1E-08 66.4 4.2 26 157-182 98-123 (254)
214 KOG0731 AAA+-type ATPase conta 96.5 0.017 3.8E-07 67.4 11.5 175 134-333 311-520 (774)
215 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.016 3.4E-07 60.2 10.4 92 157-249 19-126 (235)
216 PRK04132 replication factor C 96.5 0.036 7.8E-07 66.7 14.4 154 165-338 574-732 (846)
217 KOG0734 AAA+-type ATPase conta 96.5 0.0066 1.4E-07 66.5 7.4 94 134-249 304-407 (752)
218 PRK06090 DNA polymerase III su 96.5 0.078 1.7E-06 56.8 15.4 161 143-337 10-201 (319)
219 COG2812 DnaX DNA polymerase II 96.4 0.013 2.7E-07 66.3 9.4 186 134-332 16-215 (515)
220 PRK12727 flagellar biosynthesi 96.4 0.1 2.2E-06 59.0 16.5 88 157-248 350-438 (559)
221 KOG2004 Mitochondrial ATP-depe 96.4 0.025 5.5E-07 64.4 11.6 64 134-205 411-480 (906)
222 TIGR02238 recomb_DMC1 meiotic 96.4 0.024 5.1E-07 60.9 11.0 59 157-216 96-157 (313)
223 PF10443 RNA12: RNA12 protein; 96.4 0.12 2.6E-06 56.6 16.1 198 142-347 2-288 (431)
224 cd00544 CobU Adenosylcobinamid 96.4 0.0038 8.2E-08 60.4 4.4 147 160-332 2-167 (169)
225 PRK09361 radB DNA repair and r 96.3 0.017 3.7E-07 59.4 9.3 45 157-205 23-67 (225)
226 COG0466 Lon ATP-dependent Lon 96.3 0.26 5.7E-06 56.8 19.1 63 135-205 324-392 (782)
227 cd01393 recA_like RecA is a b 96.3 0.018 4E-07 59.3 9.6 50 157-206 19-71 (226)
228 KOG1947 Leucine rich repeat pr 96.3 0.00079 1.7E-08 78.4 -0.8 87 585-671 186-280 (482)
229 PRK06964 DNA polymerase III su 96.3 0.12 2.7E-06 55.9 15.7 90 237-337 131-225 (342)
230 PF13306 LRR_5: Leucine rich r 96.3 0.0084 1.8E-07 55.4 6.1 122 507-636 3-128 (129)
231 KOG2739 Leucine-rich acidic nu 96.3 0.0028 6E-08 63.6 2.8 101 564-668 43-151 (260)
232 COG0470 HolB ATPase involved i 96.3 0.02 4.3E-07 62.7 10.0 121 136-275 3-148 (325)
233 PF08423 Rad51: Rad51; InterP 96.2 0.043 9.2E-07 57.3 11.7 57 157-214 38-97 (256)
234 KOG1969 DNA replication checkp 96.2 0.01 2.2E-07 67.6 7.4 73 157-250 326-399 (877)
235 KOG2228 Origin recognition com 96.2 0.031 6.7E-07 58.1 10.2 167 134-305 24-219 (408)
236 PRK04296 thymidine kinase; Pro 96.2 0.0058 1.3E-07 60.8 4.7 112 158-278 3-118 (190)
237 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0068 1.5E-07 65.1 5.4 47 134-182 51-103 (361)
238 PRK06835 DNA replication prote 96.2 0.0087 1.9E-07 64.5 6.2 36 158-196 184-219 (329)
239 KOG0733 Nuclear AAA ATPase (VC 96.1 0.067 1.5E-06 60.0 12.7 70 157-248 223-292 (802)
240 TIGR02012 tigrfam_recA protein 96.1 0.017 3.6E-07 61.8 7.9 85 157-249 55-144 (321)
241 TIGR03345 VI_ClpV1 type VI sec 96.1 0.0095 2.1E-07 73.0 6.8 46 134-181 566-620 (852)
242 PF01583 APS_kinase: Adenylyls 96.0 0.0074 1.6E-07 56.9 4.4 36 157-195 2-37 (156)
243 COG2607 Predicted ATPase (AAA+ 96.0 0.04 8.8E-07 54.6 9.4 51 132-182 58-110 (287)
244 TIGR01243 CDC48 AAA family ATP 96.0 0.047 1E-06 66.7 12.4 172 134-333 178-383 (733)
245 COG1875 NYN ribonuclease and A 96.0 0.026 5.6E-07 59.4 8.5 48 144-191 232-279 (436)
246 TIGR01243 CDC48 AAA family ATP 96.0 0.057 1.2E-06 65.9 13.1 149 157-331 487-657 (733)
247 TIGR01425 SRP54_euk signal rec 96.0 0.21 4.7E-06 55.5 16.2 27 156-182 99-125 (429)
248 KOG1514 Origin recognition com 96.0 0.18 3.8E-06 57.9 15.5 198 135-340 397-624 (767)
249 TIGR02902 spore_lonB ATP-depen 96.0 0.018 3.9E-07 66.9 8.2 46 134-181 65-110 (531)
250 KOG2739 Leucine-rich acidic nu 96.0 0.0016 3.4E-08 65.4 -0.4 81 562-642 63-151 (260)
251 cd01133 F1-ATPase_beta F1 ATP 96.0 0.042 9.2E-07 57.1 9.8 91 157-249 69-174 (274)
252 TIGR03346 chaperone_ClpB ATP-d 95.9 0.016 3.4E-07 71.6 7.8 60 134-198 565-633 (852)
253 cd00983 recA RecA is a bacter 95.9 0.023 4.9E-07 60.7 7.6 84 157-248 55-143 (325)
254 PF01695 IstB_IS21: IstB-like 95.8 0.0085 1.9E-07 58.7 4.1 73 157-249 47-119 (178)
255 PF07693 KAP_NTPase: KAP famil 95.8 0.11 2.5E-06 56.8 13.4 70 145-214 5-81 (325)
256 PRK06696 uridine kinase; Valid 95.8 0.014 3E-07 59.9 5.6 40 142-181 4-46 (223)
257 COG1484 DnaC DNA replication p 95.8 0.034 7.3E-07 57.9 8.5 82 147-249 97-178 (254)
258 PRK09354 recA recombinase A; P 95.8 0.028 6.1E-07 60.5 8.1 85 157-249 60-149 (349)
259 cd01394 radB RadB. The archaea 95.8 0.044 9.5E-07 56.1 9.4 42 157-201 19-60 (218)
260 PRK05800 cobU adenosylcobinami 95.8 0.0054 1.2E-07 59.5 2.4 151 159-334 3-169 (170)
261 CHL00095 clpC Clp protease ATP 95.8 0.018 3.9E-07 70.9 7.5 46 134-181 509-563 (821)
262 PRK07952 DNA replication prote 95.8 0.052 1.1E-06 55.9 9.7 88 144-249 84-173 (244)
263 PLN00020 ribulose bisphosphate 95.8 0.02 4.4E-07 61.1 6.6 26 156-181 147-172 (413)
264 PLN03187 meiotic recombination 95.8 0.057 1.2E-06 58.5 10.2 59 157-216 126-187 (344)
265 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.037 8.1E-07 52.5 7.7 115 158-276 3-138 (159)
266 PLN03186 DNA repair protein RA 95.7 0.077 1.7E-06 57.5 11.1 58 157-215 123-183 (342)
267 cd03115 SRP The signal recogni 95.7 0.045 9.8E-07 53.6 8.7 24 159-182 2-25 (173)
268 PTZ00035 Rad51 protein; Provis 95.7 0.097 2.1E-06 56.9 11.9 58 157-215 118-178 (337)
269 TIGR02639 ClpA ATP-dependent C 95.7 0.027 5.9E-07 68.4 8.4 46 134-181 454-508 (731)
270 PRK10865 protein disaggregatio 95.7 0.029 6.3E-07 69.0 8.7 46 134-181 568-622 (857)
271 TIGR03499 FlhF flagellar biosy 95.7 0.052 1.1E-06 57.7 9.5 87 157-247 194-281 (282)
272 PRK14722 flhF flagellar biosyn 95.7 0.039 8.4E-07 60.2 8.6 88 157-248 137-225 (374)
273 COG0542 clpA ATP-binding subun 95.7 0.021 4.5E-07 67.3 6.8 154 134-304 170-345 (786)
274 PRK06547 hypothetical protein; 95.6 0.015 3.4E-07 56.5 4.9 34 148-181 6-39 (172)
275 TIGR02236 recomb_radA DNA repa 95.6 0.074 1.6E-06 57.7 10.7 57 157-214 95-154 (310)
276 PRK08939 primosomal protein Dn 95.6 0.063 1.4E-06 57.5 9.8 100 156-275 155-260 (306)
277 PRK08699 DNA polymerase III su 95.6 0.11 2.3E-06 56.4 11.6 25 157-181 21-45 (325)
278 TIGR02239 recomb_RAD51 DNA rep 95.6 0.053 1.2E-06 58.4 9.3 58 157-215 96-156 (316)
279 KOG2123 Uncharacterized conser 95.6 0.00067 1.5E-08 67.9 -4.7 80 540-621 18-99 (388)
280 PHA00729 NTP-binding motif con 95.6 0.016 3.5E-07 58.2 4.9 35 147-181 7-41 (226)
281 PRK05541 adenylylsulfate kinas 95.6 0.038 8.2E-07 54.3 7.5 36 156-194 6-41 (176)
282 COG2884 FtsE Predicted ATPase 95.6 0.019 4.2E-07 54.7 5.0 26 157-182 28-53 (223)
283 COG1102 Cmk Cytidylate kinase 95.5 0.035 7.6E-07 51.6 6.4 45 159-217 2-46 (179)
284 COG1618 Predicted nucleotide k 95.5 0.019 4E-07 53.3 4.6 25 158-182 6-30 (179)
285 PRK00771 signal recognition pa 95.5 0.095 2.1E-06 58.8 11.2 87 156-247 94-184 (437)
286 PF13481 AAA_25: AAA domain; P 95.5 0.079 1.7E-06 52.9 9.8 42 158-199 33-81 (193)
287 KOG0730 AAA+-type ATPase [Post 95.5 0.43 9.3E-06 54.6 16.0 72 156-249 467-538 (693)
288 PRK04301 radA DNA repair and r 95.5 0.084 1.8E-06 57.3 10.5 57 157-214 102-161 (317)
289 PRK15455 PrkA family serine pr 95.5 0.016 3.6E-07 65.5 4.9 46 134-181 76-127 (644)
290 KOG0728 26S proteasome regulat 95.5 0.2 4.4E-06 49.7 11.7 128 156-305 180-331 (404)
291 PF03215 Rad17: Rad17 cell cyc 95.5 0.046 1E-06 62.7 8.6 49 142-195 25-78 (519)
292 PF13238 AAA_18: AAA domain; P 95.4 0.013 2.7E-07 54.2 3.4 22 160-181 1-22 (129)
293 TIGR00064 ftsY signal recognit 95.4 0.083 1.8E-06 55.6 9.8 89 156-248 71-164 (272)
294 PF00485 PRK: Phosphoribulokin 95.4 0.014 3.1E-07 58.4 3.8 24 159-182 1-24 (194)
295 PF06309 Torsin: Torsin; Inte 95.4 0.065 1.4E-06 48.1 7.4 50 134-183 25-79 (127)
296 COG0541 Ffh Signal recognition 95.4 0.93 2E-05 49.6 17.4 60 156-218 99-159 (451)
297 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.13 2.7E-06 53.4 10.8 47 157-208 21-67 (237)
298 KOG0735 AAA+-type ATPase [Post 95.3 0.043 9.3E-07 62.5 7.5 73 157-249 431-505 (952)
299 PRK10733 hflB ATP-dependent me 95.3 0.09 2E-06 62.7 10.9 128 158-307 186-337 (644)
300 cd02019 NK Nucleoside/nucleoti 95.3 0.014 3.1E-07 47.0 2.9 23 159-181 1-23 (69)
301 PRK11889 flhF flagellar biosyn 95.3 0.083 1.8E-06 57.4 9.3 88 156-248 240-330 (436)
302 TIGR02858 spore_III_AA stage I 95.3 0.06 1.3E-06 56.4 8.1 117 154-278 108-231 (270)
303 COG3854 SpoIIIAA ncharacterize 95.2 0.061 1.3E-06 52.9 7.3 117 148-277 128-254 (308)
304 COG0468 RecA RecA/RadA recombi 95.2 0.11 2.4E-06 54.3 9.7 87 157-248 60-151 (279)
305 COG5238 RNA1 Ran GTPase-activa 95.2 0.02 4.3E-07 57.5 4.0 43 582-624 87-134 (388)
306 PF07728 AAA_5: AAA domain (dy 95.1 0.051 1.1E-06 51.0 6.6 42 160-207 2-43 (139)
307 PF13671 AAA_33: AAA domain; P 95.1 0.019 4.1E-07 54.2 3.7 23 159-181 1-23 (143)
308 PRK12724 flagellar biosynthesi 95.1 0.068 1.5E-06 58.8 8.2 25 157-181 223-247 (432)
309 PRK08533 flagellar accessory p 95.1 0.11 2.3E-06 53.5 9.3 48 157-209 24-71 (230)
310 PRK05480 uridine/cytidine kina 95.1 0.021 4.4E-07 58.0 4.0 27 155-181 4-30 (209)
311 PF00006 ATP-synt_ab: ATP synt 95.1 0.11 2.4E-06 52.3 9.1 86 157-249 15-116 (215)
312 TIGR00390 hslU ATP-dependent p 95.1 0.043 9.4E-07 60.0 6.5 46 134-181 12-71 (441)
313 PRK11034 clpA ATP-dependent Cl 95.1 0.049 1.1E-06 65.5 7.6 46 134-181 458-512 (758)
314 COG0563 Adk Adenylate kinase a 95.1 0.043 9.3E-07 53.6 5.9 23 159-181 2-24 (178)
315 PTZ00088 adenylate kinase 1; P 95.0 0.027 5.9E-07 57.5 4.7 22 160-181 9-30 (229)
316 PRK08233 hypothetical protein; 95.0 0.018 3.9E-07 57.0 3.4 25 157-181 3-27 (182)
317 cd02027 APSK Adenosine 5'-phos 95.0 0.098 2.1E-06 49.7 8.2 23 159-181 1-23 (149)
318 KOG2123 Uncharacterized conser 95.0 0.0025 5.3E-08 64.0 -2.8 97 515-616 18-123 (388)
319 COG1066 Sms Predicted ATP-depe 95.0 0.07 1.5E-06 57.4 7.7 86 157-249 93-179 (456)
320 PRK10867 signal recognition pa 95.0 0.11 2.5E-06 58.0 9.9 27 156-182 99-125 (433)
321 PRK06217 hypothetical protein; 95.0 0.034 7.4E-07 55.0 5.2 36 159-194 3-38 (183)
322 cd01131 PilT Pilus retraction 95.0 0.024 5.2E-07 56.8 4.1 108 158-278 2-111 (198)
323 PRK12723 flagellar biosynthesi 95.0 0.11 2.4E-06 57.2 9.5 89 157-248 174-264 (388)
324 PRK06067 flagellar accessory p 95.0 0.11 2.3E-06 53.9 9.0 47 157-208 25-71 (234)
325 PRK12726 flagellar biosynthesi 95.0 0.12 2.6E-06 56.0 9.3 88 157-248 206-295 (407)
326 PF00154 RecA: recA bacterial 94.9 0.11 2.4E-06 55.4 9.1 85 157-249 53-142 (322)
327 KOG0736 Peroxisome assembly fa 94.9 0.2 4.3E-06 58.0 11.4 92 134-249 672-775 (953)
328 cd02025 PanK Pantothenate kina 94.9 0.099 2.1E-06 53.3 8.4 23 159-181 1-23 (220)
329 PRK14974 cell division protein 94.9 0.13 2.7E-06 55.7 9.5 89 156-249 139-233 (336)
330 PRK06762 hypothetical protein; 94.9 0.023 4.9E-07 55.3 3.6 25 157-181 2-26 (166)
331 PTZ00301 uridine kinase; Provi 94.9 0.022 4.8E-07 57.3 3.5 25 157-181 3-27 (210)
332 PF07724 AAA_2: AAA domain (Cd 94.9 0.042 9E-07 53.4 5.3 43 157-201 3-45 (171)
333 TIGR03878 thermo_KaiC_2 KaiC d 94.9 0.13 2.7E-06 54.0 9.2 39 157-198 36-74 (259)
334 PRK12678 transcription termina 94.8 0.1 2.2E-06 59.1 8.6 92 157-249 416-514 (672)
335 TIGR00235 udk uridine kinase. 94.8 0.029 6.2E-07 56.8 4.1 26 156-181 5-30 (207)
336 cd01124 KaiC KaiC is a circadi 94.8 0.083 1.8E-06 52.4 7.4 38 159-199 1-38 (187)
337 cd01121 Sms Sms (bacterial rad 94.8 0.094 2E-06 57.7 8.3 87 157-249 82-169 (372)
338 KOG3864 Uncharacterized conser 94.8 0.003 6.6E-08 60.7 -2.8 44 816-859 123-166 (221)
339 PRK07667 uridine kinase; Provi 94.8 0.036 7.8E-07 55.3 4.7 27 156-182 16-42 (193)
340 KOG0733 Nuclear AAA ATPase (VC 94.8 0.12 2.6E-06 58.1 8.9 128 157-306 545-693 (802)
341 KOG1970 Checkpoint RAD17-RFC c 94.8 0.16 3.4E-06 56.6 9.7 47 143-194 89-142 (634)
342 TIGR00959 ffh signal recogniti 94.8 0.15 3.3E-06 57.0 10.0 26 156-181 98-123 (428)
343 PRK07132 DNA polymerase III su 94.7 0.73 1.6E-05 49.1 14.6 165 145-336 5-184 (299)
344 cd03222 ABC_RNaseL_inhibitor T 94.7 0.086 1.9E-06 51.5 7.0 25 157-181 25-49 (177)
345 PF12775 AAA_7: P-loop contain 94.7 0.022 4.8E-07 59.9 3.1 89 145-248 22-110 (272)
346 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.07 1.5E-06 54.5 6.5 24 158-181 31-54 (254)
347 cd03247 ABCC_cytochrome_bd The 94.7 0.058 1.3E-06 53.1 5.9 25 157-181 28-52 (178)
348 cd03214 ABC_Iron-Siderophores_ 94.7 0.083 1.8E-06 52.1 6.9 25 157-181 25-49 (180)
349 COG4608 AppF ABC-type oligopep 94.7 0.1 2.2E-06 53.5 7.4 125 157-285 39-179 (268)
350 TIGR01360 aden_kin_iso1 adenyl 94.7 0.028 6E-07 56.0 3.5 26 156-181 2-27 (188)
351 cd01135 V_A-ATPase_B V/A-type 94.6 0.19 4.1E-06 52.2 9.5 95 156-250 68-178 (276)
352 PRK03839 putative kinase; Prov 94.6 0.028 6.1E-07 55.5 3.5 23 159-181 2-24 (180)
353 COG0572 Udk Uridine kinase [Nu 94.6 0.034 7.3E-07 55.2 3.9 26 156-181 7-32 (218)
354 PF13306 LRR_5: Leucine rich r 94.6 0.035 7.6E-07 51.2 3.9 105 532-642 3-111 (129)
355 PRK06002 fliI flagellum-specif 94.6 0.099 2.1E-06 58.3 7.9 87 157-249 165-265 (450)
356 COG1419 FlhF Flagellar GTP-bin 94.6 0.34 7.4E-06 52.7 11.5 101 144-248 186-291 (407)
357 PF03205 MobB: Molybdopterin g 94.5 0.069 1.5E-06 49.9 5.7 39 158-198 1-39 (140)
358 TIGR00554 panK_bact pantothena 94.5 0.18 4E-06 53.2 9.4 27 155-181 60-86 (290)
359 PRK05201 hslU ATP-dependent pr 94.5 0.064 1.4E-06 58.8 6.1 78 134-213 15-107 (443)
360 PRK00889 adenylylsulfate kinas 94.5 0.13 2.9E-06 50.4 8.0 26 156-181 3-28 (175)
361 PF08433 KTI12: Chromatin asso 94.5 0.046 9.9E-07 57.3 4.8 25 158-182 2-26 (270)
362 PF00910 RNA_helicase: RNA hel 94.5 0.028 6E-07 50.0 2.8 23 160-182 1-23 (107)
363 COG3640 CooC CO dehydrogenase 94.5 0.07 1.5E-06 52.9 5.6 43 159-203 2-44 (255)
364 COG0529 CysC Adenylylsulfate k 94.5 0.18 3.8E-06 47.8 8.0 31 152-182 18-48 (197)
365 TIGR00708 cobA cob(I)alamin ad 94.5 0.2 4.4E-06 48.2 8.7 117 157-276 5-140 (173)
366 KOG0744 AAA+-type ATPase [Post 94.5 0.17 3.6E-06 52.5 8.4 28 157-184 177-204 (423)
367 KOG0739 AAA+-type ATPase [Post 94.4 0.28 6.1E-06 50.2 9.9 149 157-331 166-335 (439)
368 COG1428 Deoxynucleoside kinase 94.4 0.072 1.5E-06 52.2 5.5 47 157-209 4-50 (216)
369 PRK04040 adenylate kinase; Pro 94.4 0.037 7.9E-07 54.8 3.7 24 158-181 3-26 (188)
370 PRK00625 shikimate kinase; Pro 94.4 0.034 7.3E-07 54.2 3.3 23 159-181 2-24 (173)
371 PRK04328 hypothetical protein; 94.4 0.16 3.4E-06 53.0 8.5 41 156-199 22-62 (249)
372 KOG2170 ATPase of the AAA+ sup 94.3 0.084 1.8E-06 54.3 6.0 100 134-249 82-189 (344)
373 PF13245 AAA_19: Part of AAA d 94.3 0.1 2.2E-06 42.8 5.6 26 156-181 9-34 (76)
374 cd03223 ABCD_peroxisomal_ALDP 94.3 0.099 2.2E-06 50.7 6.5 25 157-181 27-51 (166)
375 PF07726 AAA_3: ATPase family 94.3 0.03 6.5E-07 50.4 2.6 22 160-181 2-23 (131)
376 PRK05703 flhF flagellar biosyn 94.3 0.13 2.9E-06 57.8 8.3 87 157-247 221-308 (424)
377 COG0464 SpoVK ATPases of the A 94.3 0.34 7.4E-06 56.4 12.1 131 156-308 275-426 (494)
378 CHL00081 chlI Mg-protoporyphyr 94.3 0.057 1.2E-06 58.5 5.1 51 130-182 13-63 (350)
379 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.3 0.075 1.6E-06 50.2 5.3 25 157-181 26-50 (144)
380 PRK13531 regulatory ATPase Rav 94.3 0.07 1.5E-06 59.8 5.8 44 134-181 20-63 (498)
381 COG5238 RNA1 Ran GTPase-activa 94.2 0.034 7.3E-07 56.0 2.9 113 560-674 88-228 (388)
382 PRK06995 flhF flagellar biosyn 94.2 0.18 4E-06 57.0 9.0 60 157-217 256-316 (484)
383 cd03283 ABC_MutS-like MutS-lik 94.2 0.13 2.7E-06 51.6 7.0 24 158-181 26-49 (199)
384 cd02029 PRK_like Phosphoribulo 94.2 0.66 1.4E-05 47.9 12.2 24 159-182 1-24 (277)
385 TIGR01359 UMP_CMP_kin_fam UMP- 94.2 0.033 7.1E-07 55.2 2.8 23 159-181 1-23 (183)
386 COG1703 ArgK Putative periplas 94.2 0.072 1.6E-06 54.9 5.1 60 146-206 38-99 (323)
387 PRK15429 formate hydrogenlyase 94.1 0.47 1E-05 57.6 13.0 46 134-181 376-423 (686)
388 cd02023 UMPK Uridine monophosp 94.1 0.033 7.2E-07 55.9 2.7 23 159-181 1-23 (198)
389 TIGR02030 BchI-ChlI magnesium 94.1 0.074 1.6E-06 57.6 5.5 48 132-181 2-49 (337)
390 PRK05439 pantothenate kinase; 94.1 0.28 6E-06 52.3 9.6 27 155-181 84-110 (311)
391 PRK09270 nucleoside triphospha 94.1 0.081 1.8E-06 54.5 5.5 28 155-182 31-58 (229)
392 PRK03846 adenylylsulfate kinas 94.0 0.17 3.8E-06 50.7 7.8 27 155-181 22-48 (198)
393 COG1120 FepC ABC-type cobalami 94.0 0.1 2.2E-06 53.6 6.0 25 157-181 28-52 (258)
394 PF06745 KaiC: KaiC; InterPro 94.0 0.085 1.8E-06 54.3 5.6 48 157-208 19-66 (226)
395 PRK14721 flhF flagellar biosyn 94.0 0.28 6E-06 54.6 9.8 60 157-217 191-251 (420)
396 PRK00131 aroK shikimate kinase 94.0 0.048 1E-06 53.5 3.6 25 157-181 4-28 (175)
397 PF03308 ArgK: ArgK protein; 94.0 0.12 2.7E-06 52.5 6.4 51 155-206 27-77 (266)
398 cd02024 NRK1 Nicotinamide ribo 94.0 0.039 8.4E-07 54.3 2.8 23 159-181 1-23 (187)
399 cd03216 ABC_Carb_Monos_I This 94.0 0.068 1.5E-06 51.7 4.5 25 157-181 26-50 (163)
400 TIGR02655 circ_KaiC circadian 93.9 0.25 5.3E-06 57.1 9.7 52 157-214 263-314 (484)
401 PRK09519 recA DNA recombinatio 93.9 0.18 4E-06 60.1 8.6 84 157-248 60-148 (790)
402 cd03230 ABC_DR_subfamily_A Thi 93.9 0.14 3.1E-06 50.0 6.7 25 157-181 26-50 (173)
403 PRK12597 F0F1 ATP synthase sub 93.9 0.22 4.8E-06 56.0 8.9 92 156-249 142-248 (461)
404 cd03228 ABCC_MRP_Like The MRP 93.9 0.14 3E-06 50.0 6.5 25 157-181 28-52 (171)
405 PF00560 LRR_1: Leucine Rich R 93.9 0.024 5.2E-07 33.9 0.7 21 542-562 1-21 (22)
406 PF00560 LRR_1: Leucine Rich R 93.9 0.024 5.1E-07 33.9 0.7 18 589-606 2-19 (22)
407 COG0488 Uup ATPase components 93.9 0.088 1.9E-06 60.5 5.8 130 157-291 348-511 (530)
408 TIGR02322 phosphon_PhnN phosph 93.8 0.05 1.1E-06 53.7 3.4 24 158-181 2-25 (179)
409 PRK08927 fliI flagellum-specif 93.8 0.29 6.4E-06 54.5 9.6 86 157-249 158-259 (442)
410 PRK14723 flhF flagellar biosyn 93.8 0.37 8.1E-06 57.4 10.9 88 157-248 185-273 (767)
411 TIGR00150 HI0065_YjeE ATPase, 93.7 0.095 2.1E-06 48.1 4.7 25 157-181 22-46 (133)
412 cd02028 UMPK_like Uridine mono 93.7 0.052 1.1E-06 53.4 3.1 24 159-182 1-24 (179)
413 PRK10751 molybdopterin-guanine 93.7 0.068 1.5E-06 51.6 3.8 27 156-182 5-31 (173)
414 cd02020 CMPK Cytidine monophos 93.7 0.05 1.1E-06 51.5 2.9 23 159-181 1-23 (147)
415 PF10236 DAP3: Mitochondrial r 93.6 5 0.00011 43.3 18.4 49 286-334 258-306 (309)
416 PRK13765 ATP-dependent proteas 93.6 0.11 2.4E-06 61.1 6.2 75 134-215 31-105 (637)
417 PRK05342 clpX ATP-dependent pr 93.6 0.14 2.9E-06 57.3 6.6 24 158-181 109-132 (412)
418 PRK13407 bchI magnesium chelat 93.6 0.08 1.7E-06 57.2 4.7 50 130-181 4-53 (334)
419 PRK10463 hydrogenase nickel in 93.6 0.15 3.2E-06 53.5 6.4 36 146-181 93-128 (290)
420 PRK08972 fliI flagellum-specif 93.6 0.22 4.8E-06 55.3 8.0 86 157-249 162-263 (444)
421 PRK10416 signal recognition pa 93.6 0.39 8.4E-06 51.8 9.7 27 156-182 113-139 (318)
422 cd00227 CPT Chloramphenicol (C 93.5 0.062 1.3E-06 52.7 3.4 24 158-181 3-26 (175)
423 cd02021 GntK Gluconate kinase 93.5 0.053 1.1E-06 51.7 2.8 23 159-181 1-23 (150)
424 KOG3864 Uncharacterized conser 93.5 0.011 2.4E-07 56.9 -1.9 65 752-832 125-190 (221)
425 TIGR00073 hypB hydrogenase acc 93.5 0.076 1.6E-06 53.7 4.0 32 150-181 15-46 (207)
426 PRK14530 adenylate kinase; Pro 93.4 0.065 1.4E-06 54.6 3.5 24 158-181 4-27 (215)
427 TIGR03305 alt_F1F0_F1_bet alte 93.4 0.3 6.5E-06 54.6 8.8 91 157-249 138-243 (449)
428 PRK13949 shikimate kinase; Pro 93.4 0.061 1.3E-06 52.3 3.1 23 159-181 3-25 (169)
429 PRK11823 DNA repair protein Ra 93.4 0.22 4.8E-06 56.6 8.0 40 157-199 80-119 (446)
430 COG4618 ArpD ABC-type protease 93.4 0.14 3E-06 56.6 5.9 25 157-181 362-386 (580)
431 PRK13947 shikimate kinase; Pro 93.4 0.063 1.4E-06 52.5 3.2 23 159-181 3-25 (171)
432 COG1124 DppF ABC-type dipeptid 93.4 0.083 1.8E-06 52.9 3.9 25 157-181 33-57 (252)
433 COG1936 Predicted nucleotide k 93.4 0.062 1.4E-06 50.7 2.9 20 159-178 2-21 (180)
434 TIGR00764 lon_rel lon-related 93.3 0.24 5.2E-06 58.5 8.3 75 134-215 18-92 (608)
435 PRK05922 type III secretion sy 93.3 0.38 8.2E-06 53.6 9.3 25 157-181 157-181 (434)
436 CHL00206 ycf2 Ycf2; Provisiona 93.3 0.34 7.4E-06 62.2 9.8 25 157-181 1630-1654(2281)
437 PF00625 Guanylate_kin: Guanyl 93.3 0.1 2.2E-06 51.6 4.5 37 157-196 2-38 (183)
438 PRK14527 adenylate kinase; Pro 93.3 0.08 1.7E-06 52.8 3.8 26 156-181 5-30 (191)
439 TIGR03263 guanyl_kin guanylate 93.2 0.064 1.4E-06 52.9 2.9 24 158-181 2-25 (180)
440 PRK06793 fliI flagellum-specif 93.2 0.33 7.2E-06 54.1 8.7 89 156-250 155-258 (432)
441 TIGR01039 atpD ATP synthase, F 93.2 0.51 1.1E-05 52.8 10.1 92 156-249 142-248 (461)
442 cd01125 repA Hexameric Replica 93.2 0.37 8.1E-06 50.0 8.7 24 159-182 3-26 (239)
443 cd03281 ABC_MSH5_euk MutS5 hom 93.1 0.083 1.8E-06 53.5 3.7 24 157-180 29-52 (213)
444 PF03193 DUF258: Protein of un 93.1 0.13 2.8E-06 48.9 4.6 35 144-181 25-59 (161)
445 COG0467 RAD55 RecA-superfamily 93.1 0.11 2.5E-06 54.6 4.9 41 156-199 22-62 (260)
446 cd01136 ATPase_flagellum-secre 93.1 0.44 9.6E-06 51.2 9.2 86 157-249 69-170 (326)
447 TIGR00416 sms DNA repair prote 93.1 0.33 7.2E-06 55.2 8.8 40 157-199 94-133 (454)
448 PLN02796 D-glycerate 3-kinase 93.1 0.55 1.2E-05 50.5 9.8 26 156-181 99-124 (347)
449 KOG0729 26S proteasome regulat 93.0 0.19 4E-06 50.4 5.7 71 156-248 210-280 (435)
450 COG0465 HflB ATP-dependent Zn 93.0 0.14 3E-06 58.9 5.5 94 134-249 150-253 (596)
451 PRK10875 recD exonuclease V su 93.0 0.23 5.1E-06 58.3 7.6 54 157-210 167-220 (615)
452 cd00464 SK Shikimate kinase (S 93.0 0.08 1.7E-06 50.6 3.3 22 160-181 2-23 (154)
453 KOG0927 Predicted transporter 93.0 1.5 3.2E-05 49.2 13.0 27 157-183 416-442 (614)
454 PRK05986 cob(I)alamin adenolsy 93.0 0.35 7.7E-06 47.3 7.5 117 157-276 22-158 (191)
455 PRK06851 hypothetical protein; 93.0 0.65 1.4E-05 50.7 10.4 44 154-199 211-254 (367)
456 PF13521 AAA_28: AAA domain; P 93.0 0.082 1.8E-06 51.2 3.2 21 160-180 2-22 (163)
457 PF08477 Miro: Miro-like prote 92.9 0.086 1.9E-06 47.8 3.2 22 160-181 2-23 (119)
458 PRK08149 ATP synthase SpaL; Va 92.9 0.42 9E-06 53.3 9.0 86 157-249 151-252 (428)
459 TIGR03498 FliI_clade3 flagella 92.9 0.32 7E-06 54.1 8.1 25 157-181 140-164 (418)
460 PF03266 NTPase_1: NTPase; In 92.9 0.088 1.9E-06 51.0 3.3 23 160-182 2-24 (168)
461 PF02374 ArsA_ATPase: Anion-tr 92.9 0.13 2.9E-06 55.1 5.0 41 158-201 2-42 (305)
462 cd01129 PulE-GspE PulE/GspE Th 92.9 0.14 3.1E-06 53.7 5.1 99 144-255 68-166 (264)
463 cd00071 GMPK Guanosine monopho 92.9 0.073 1.6E-06 49.7 2.6 23 159-181 1-23 (137)
464 PTZ00494 tuzin-like protein; P 92.9 3.7 8.1E-05 45.1 15.4 163 133-305 370-544 (664)
465 PRK12339 2-phosphoglycerate ki 92.9 0.097 2.1E-06 52.1 3.6 25 157-181 3-27 (197)
466 PRK00300 gmk guanylate kinase; 92.8 0.084 1.8E-06 53.4 3.2 25 157-181 5-29 (205)
467 PRK09280 F0F1 ATP synthase sub 92.8 0.47 1E-05 53.3 9.2 92 156-249 143-249 (463)
468 COG1224 TIP49 DNA helicase TIP 92.8 0.19 4.2E-06 52.8 5.7 54 134-188 39-95 (450)
469 TIGR01313 therm_gnt_kin carboh 92.8 0.071 1.5E-06 51.6 2.6 22 160-181 1-22 (163)
470 COG0003 ArsA Predicted ATPase 92.8 0.18 3.8E-06 54.1 5.7 48 157-207 2-49 (322)
471 cd01134 V_A-ATPase_A V/A-type 92.8 0.38 8.2E-06 51.6 8.0 48 157-209 157-205 (369)
472 cd01132 F1_ATPase_alpha F1 ATP 92.8 0.37 8.1E-06 50.0 7.8 93 157-256 69-180 (274)
473 cd01122 GP4d_helicase GP4d_hel 92.8 0.63 1.4E-05 49.3 10.0 51 157-211 30-80 (271)
474 cd00820 PEPCK_HprK Phosphoenol 92.7 0.1 2.2E-06 45.8 3.0 22 157-178 15-36 (107)
475 TIGR01069 mutS2 MutS2 family p 92.7 0.073 1.6E-06 64.5 2.9 182 157-360 322-523 (771)
476 PF01078 Mg_chelatase: Magnesi 92.7 0.17 3.6E-06 50.1 4.9 44 134-181 3-46 (206)
477 PRK13975 thymidylate kinase; P 92.7 0.1 2.2E-06 52.3 3.6 24 158-181 3-26 (196)
478 PRK10078 ribose 1,5-bisphospho 92.6 0.087 1.9E-06 52.3 3.0 24 158-181 3-26 (186)
479 KOG0736 Peroxisome assembly fa 92.6 0.95 2.1E-05 52.7 11.2 151 157-333 431-600 (953)
480 KOG0727 26S proteasome regulat 92.6 0.29 6.3E-06 48.7 6.3 27 155-181 187-213 (408)
481 TIGR01040 V-ATPase_V1_B V-type 92.6 0.44 9.6E-06 53.1 8.5 93 157-249 141-258 (466)
482 PRK07721 fliI flagellum-specif 92.6 0.42 9.1E-06 53.7 8.5 27 155-181 156-182 (438)
483 COG2019 AdkA Archaeal adenylat 92.6 0.12 2.6E-06 48.4 3.4 25 157-181 4-28 (189)
484 PRK05057 aroK shikimate kinase 92.5 0.1 2.3E-06 50.9 3.3 25 157-181 4-28 (172)
485 TIGR00176 mobB molybdopterin-g 92.5 0.1 2.3E-06 49.7 3.2 24 159-182 1-24 (155)
486 cd01672 TMPK Thymidine monopho 92.5 0.27 5.8E-06 49.3 6.4 24 159-182 2-25 (200)
487 KOG3347 Predicted nucleotide k 92.5 0.093 2E-06 48.0 2.6 25 157-181 7-31 (176)
488 PF06068 TIP49: TIP49 C-termin 92.5 0.2 4.3E-06 53.7 5.4 48 134-181 24-74 (398)
489 KOG3354 Gluconate kinase [Carb 92.5 0.56 1.2E-05 43.3 7.5 26 157-182 12-37 (191)
490 COG1126 GlnQ ABC-type polar am 92.5 0.1 2.2E-06 51.2 3.0 25 157-181 28-52 (240)
491 KOG1532 GTPase XAB1, interacts 92.5 0.12 2.6E-06 52.1 3.6 26 157-182 19-44 (366)
492 PRK14529 adenylate kinase; Pro 92.5 0.42 9E-06 48.5 7.6 22 160-181 3-24 (223)
493 PF13504 LRR_7: Leucine rich r 92.4 0.091 2E-06 29.1 1.6 17 844-861 1-17 (17)
494 PRK05022 anaerobic nitric oxid 92.4 0.22 4.9E-06 57.9 6.5 61 134-199 187-249 (509)
495 PRK15453 phosphoribulokinase; 92.4 0.13 2.9E-06 53.3 4.0 26 156-181 4-29 (290)
496 PRK14737 gmk guanylate kinase; 92.3 0.11 2.4E-06 51.3 3.2 26 156-181 3-28 (186)
497 TIGR00041 DTMP_kinase thymidyl 92.3 0.29 6.4E-06 48.9 6.4 25 158-182 4-28 (195)
498 PRK09099 type III secretion sy 92.3 0.47 1E-05 53.1 8.4 88 156-249 162-264 (441)
499 COG0194 Gmk Guanylate kinase [ 92.3 0.13 2.7E-06 49.5 3.3 25 157-181 4-28 (191)
500 PLN02200 adenylate kinase fami 92.2 0.13 2.7E-06 53.0 3.6 25 157-181 43-67 (234)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-87 Score=790.10 Aligned_cols=815 Identities=30% Similarity=0.461 Sum_probs=602.8
Q ss_pred HHhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 036714 6 FKCAGPPIHQYVRRHRKLSEIMRNLERALQELNSKKGDIEATLKVECDLGKKQPSNEVNDWLKNVERINNEAQSIEEEVK 85 (932)
Q Consensus 6 ~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~l~~a~~~~~~~~~~~v~~Wl~~v~~~~~~~~~~~d~~~ 85 (932)
++++++.+.+++....+.++.+..+++++..|+++++|++ ..+.....+..|...+++++|+++++++.+.
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~---------a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLD---------AKRDDLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH---------hhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999988 3344466788999999999999999987642
Q ss_pred c-------CCc---------------------cccccchHHHHHHHHHHHHHHhcCCCcccccccCCCCCcccCC---cc
Q 036714 86 K-------GKY---------------------FSRARLGKHAEEKIQEVKEYHQKGRSFTSLVIDAPPSRGLTLT---MA 134 (932)
Q Consensus 86 ~-------~~~---------------------~~r~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 134 (932)
- .+. ...+.+++++-+++++++.+..++.+..+-....+.......| ..
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 1 000 0112466777777777777765543322111011111111112 23
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHh
Q 036714 135 TLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALK 214 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 214 (932)
. ||. +..++++++.|.+++..+++|+||||+||||||++++|+...+..+|+.++||+||+.++...++++|+..++
T Consensus 160 ~-VG~--e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 160 D-VGL--ETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred c-ccH--HHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 3 998 8899999999999888999999999999999999999998657899999999999999999999999999998
Q ss_pred ccccccchH-HHHHHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCcccccc-cccee-EeccC
Q 036714 215 QSLLENEDK-VRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGICRS-MGCKE-VRVQP 291 (932)
Q Consensus 215 ~~~~~~~~~-~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~-~~~~~-~~l~~ 291 (932)
.......+. .......+..+++++||+|||||||+..+|+.++.++|...+||||++|||++.||.. +++.. ++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 744333221 1333334444557999999999999999999999999988899999999999999998 78766 99999
Q ss_pred CCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHhcc-cccCCCCchh
Q 036714 292 LSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRGR-VRSLNGVDTE 370 (932)
Q Consensus 292 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~ 370 (932)
|+.+|||.||++.++.......+.++++|++|+++|+|+|||++++|+.|+.+++..+|+++.+.+.+. ....+++.+.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 999999999999998875545666999999999999999999999999999999999999999998776 3333466789
Q ss_pred HHhHhHhhhccCCchhhHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccchhhhhHHhHHHHHHHHHHHcccccccCC-
Q 036714 371 VFGRLEFSYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAKD- 449 (932)
Q Consensus 371 i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~- 449 (932)
+++++++||+.|| +++|.||+|||+||+||.|+++.|+.+|+||||+++...+...+++|+.|+.+|++++|+...++
T Consensus 397 i~~iLklSyd~L~-~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 397 ILPILKLSYDNLP-EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hHHhhhccHhhhh-HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 9999999999999 89999999999999999999999999999999999977788899999999999999999998763
Q ss_pred --CCEEEeCchhHHHHHHhhc-----cCCceEEEcccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEE
Q 036714 450 --GRCVKMHDLIRDMALSITS-----ESPSFMVKAGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLL 522 (932)
Q Consensus 450 --~~~~~mHdlv~d~a~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 522 (932)
..+|+|||+|||+|.++++ +++ .++..+.++.+.|....| ..+|++++++|.+..++.. ..+++|++|.
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~--~~~~~L~tLl 551 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGS--SENPKLRTLL 551 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccch-hheeEEEEeccchhhccCC--CCCCccceEE
Confidence 3789999999999999999 566 566666566667766555 5789999999998877654 4677999999
Q ss_pred eecCCC-ccCCChhhhccCCceeEEEccCCC-CcccCccccccccccccccccccccCCCC-ChhccccCcEeecccC-C
Q 036714 523 LQANGN-LWTIPECFFVYMHGLKVLNLSRTN-IKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEET-G 598 (932)
Q Consensus 523 l~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~-~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~-~ 598 (932)
+.+|.. +..++..+|..++.|++|||++|. +..+|++|+.|.+||||+|++ ..+..+| .+++|+.|.+||+..+ .
T Consensus 552 l~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 552 LQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred EeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccc
Confidence 999953 788899999999999999999875 678999999999999999987 4577888 7888888888888877 4
Q ss_pred CcccccccccCCCCCEEeCCCCCCc--ccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhh
Q 036714 599 IEEVPEGMEMLENLSHLYLSSPRLK--KFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFN 676 (932)
Q Consensus 599 i~~lp~~~~~l~~L~~L~l~~~~l~--~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~ 676 (932)
+..+|..+..|.+|++|.+...... ..-.+.+.++.+|+.|....... .....+..+ .+|..+.....
T Consensus 631 l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---~~~e~l~~~-~~L~~~~~~l~------ 700 (889)
T KOG4658|consen 631 LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---LLLEDLLGM-TRLRSLLQSLS------ 700 (889)
T ss_pred cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---HhHhhhhhh-HHHHHHhHhhh------
Confidence 4445555556888888877654311 11111123444444444431111 111222222 22222111100
Q ss_pred hhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCccccc--------
Q 036714 677 LYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASLN-------- 748 (932)
Q Consensus 677 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-------- 748 (932)
+..+........+..+.+|+.|.+.+|...+...
T Consensus 701 --------------------------------------~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~ 742 (889)
T KOG4658|consen 701 --------------------------------------IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV 742 (889)
T ss_pred --------------------------------------hcccccceeecccccccCcceEEEEcCCCchhhcccccccch
Confidence 0000000011122344566666666666432211
Q ss_pred -cccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCcccee-ecc
Q 036714 749 -DFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKF-YLW 826 (932)
Q Consensus 749 -~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L-~L~ 826 (932)
.+++++..+.+.+|....++.+.. ..++|+.|.+..|..++++++...... ..... ...|+++..+ .+.
T Consensus 743 ~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e~~i~~~k~~~---~l~~~---i~~f~~~~~l~~~~ 813 (889)
T KOG4658|consen 743 LLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCRLLEDIIPKLKALL---ELKEL---ILPFNKLEGLRMLC 813 (889)
T ss_pred hhhHHHHHHHHhhccccccccchhh---ccCcccEEEEecccccccCCCHHHHhh---hcccE---Eecccccccceeee
Confidence 113678888888888888765432 336899999999998888876432100 00111 3456777777 577
Q ss_pred CCcccccccCCCCcccCCCccEEEecccCCCccccCCCcccCCCCCCCC-CCcceEecchhhhhhcccCCccccccc
Q 036714 827 GLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPP-PTLEVIKMEKELWESLEWDQPNAKDVL 902 (932)
Q Consensus 827 ~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~-~~L~~l~~~~~~~~~l~~~~~~~~~~~ 902 (932)
+.+.+..+.. ....++.|+.+.+..||+++.+|... .+.+..| +.++. .-+.+|.+.++|.++..+..+
T Consensus 814 ~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l~~~P~~~----~~~i~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 814 SLGGLPQLYW--LPLSFLKLEELIVEECPKLGKLPLLS----TLTIVGCEEKLKE-YPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cCCCCceeEe--cccCccchhheehhcCcccccCcccc----ccceeccccceee-cCCccceeeEEehhhhhhhhc
Confidence 7777777766 55567789999999999999999632 2233444 33332 233346667778665554333
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.7e-61 Score=601.76 Aligned_cols=654 Identities=21% Similarity=0.302 Sum_probs=448.8
Q ss_pred ccccccchHHHHHHHHHHhc--CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE---CCc---------
Q 036714 134 ATLAGEKTKKVVEEIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV---SQP--------- 199 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~--------- 199 (932)
..+||+ +..++++..++. .+++++|+|+||||+||||||+++|+.. ...|+..+|+.. +..
T Consensus 184 ~~~vG~--~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 184 EDFVGI--EDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccch--HHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccc
Confidence 579999 667788877764 4568999999999999999999999986 467888777642 111
Q ss_pred --cC-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCc
Q 036714 200 --LY-LIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSV 276 (932)
Q Consensus 200 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~ 276 (932)
++ ...++.+++..+.......... ... .+..++++|+||||||||+..+|+.+.....+.++||+||||||+.
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~~---~~~-~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIYH---LGA-MEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccCC---HHH-HHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 01 1234444444443221111101 112 2334478999999999999999998877666678999999999999
Q ss_pred ccccccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCchHHHHHHHH
Q 036714 277 GICRSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALN 355 (932)
Q Consensus 277 ~v~~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~ 355 (932)
+++..+++.. |+++.++.++||+||+++|+.... .+....+++++|+++|+|+|||++++|++|+++ +..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9998776666 999999999999999999987643 345678999999999999999999999999985 6789999999
Q ss_pred HHhcccccCCCCchhHHhHhHhhhccCCchhhHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccchhhhhHHhHHHHHH
Q 036714 356 ELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTIL 435 (932)
Q Consensus 356 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~l 435 (932)
+++... +.++..+|++||+.|+++..|.||+++|+|+.++.++ .+..|++.+.... +..+
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l 472 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGL 472 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhCh
Confidence 987532 3689999999999998556899999999999886553 4677888765432 2238
Q ss_pred HHHHHcccccccCCCCEEEeCchhHHHHHHhhccCC------ceEEEcccccccCCCccccc------------------
Q 036714 436 NRLVNCCLLESAKDGRCVKMHDLIRDMALSITSESP------SFMVKAGLRLQEFPGKQEWK------------------ 491 (932)
Q Consensus 436 ~~L~~~~ll~~~~~~~~~~mHdlv~d~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~------------------ 491 (932)
+.|+++||++... ..+.|||++|++|+++++++. .++... ..+..........
T Consensus 473 ~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~-~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i 549 (1153)
T PLN03210 473 KNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA-KDICDVLEDNTGTKKVLGITLDIDEIDELHI 549 (1153)
T ss_pred HHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH-HHHHHHHHhCcccceeeEEEeccCccceeee
Confidence 8999999998754 359999999999999987653 111111 0000000011112
Q ss_pred --------cccceeeccccccc-------ccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 492 --------ANLERVSLMMNDIE-------EIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 492 --------~~~~~l~l~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+++.+.+..+... .+|.....-.++|+.|.+.++ .+..+|..+ .+.+|+.|+++++.+..+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f--~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF--RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC--CccCCcEEECcCcccccc
Confidence 23333333222110 112211111235777777766 667777665 467899999999988889
Q ss_pred CccccccccccccccccccccCCCCChhccccCcEeecccC-CCcccccccccCCCCCEEeCCCCC-CcccCCCccCCCC
Q 036714 557 PSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEET-GIEEVPEGMEMLENLSHLYLSSPR-LKKFPTGILPRLR 634 (932)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~ 634 (932)
|..+..+++|++|+|++|..++.+|.++.+++|++|++++| .+..+|..+..+++|+.|++++|. +..+|.++ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence 88888999999999999888888998889999999999988 678899999999999999999876 78888764 789
Q ss_pred CcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEE
Q 036714 635 NLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIF 714 (932)
Q Consensus 635 ~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~ 714 (932)
+|+.|++++|....... . .. .+|+.|++..+.+..+|..+. ..+|..+.+.
T Consensus 705 sL~~L~Lsgc~~L~~~p--~--~~-~nL~~L~L~~n~i~~lP~~~~---l~~L~~L~l~--------------------- 755 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFP--D--IS-TNISWLDLDETAIEEFPSNLR---LENLDELILC--------------------- 755 (1153)
T ss_pred CCCEEeCCCCCCccccc--c--cc-CCcCeeecCCCcccccccccc---cccccccccc---------------------
Confidence 99999998665432211 1 13 688888888877666554321 1222222111
Q ss_pred Eeecccccc--------cCcccCCcccceeeEeccCCccccc---cccCCccEEEEecCCCCcccccccccccCCCccEE
Q 036714 715 LIDCKICER--------EETIVLPEDVQFLQMFEVSDVASLN---DFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVL 783 (932)
Q Consensus 715 l~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~l~---~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L 783 (932)
.+..... ......+++|+.|++++|..+..++ ..+++|+.|+|++|+.++.+|... ++++|+.|
T Consensus 756 --~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L 830 (1153)
T PLN03210 756 --EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESL 830 (1153)
T ss_pred --ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEE
Confidence 1100000 0011234566666666665433332 223566777777776666654422 45566677
Q ss_pred EEeeccccccccccccchh----hhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCcc
Q 036714 784 EVEDCYSIEEIVAVEDEET----EKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKR 859 (932)
Q Consensus 784 ~l~~c~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~ 859 (932)
++++|..+..++.....-. ..+.-...|..+..+++|+.|+|.+|++|+.++. ....+++|+.+.+++|++|+.
T Consensus 831 ~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 831 DLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccc
Confidence 7776666555432110000 0000011112256789999999999999999887 445577999999999999987
Q ss_pred ccC
Q 036714 860 LSL 862 (932)
Q Consensus 860 lp~ 862 (932)
++.
T Consensus 909 ~~l 911 (1153)
T PLN03210 909 ASW 911 (1153)
T ss_pred ccC
Confidence 754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.8e-42 Score=371.66 Aligned_cols=276 Identities=36% Similarity=0.663 Sum_probs=221.5
Q ss_pred HHHHHHHHHHhcC--CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc
Q 036714 142 KKVVEEIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE 219 (932)
Q Consensus 142 ~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 219 (932)
+.++++|.+.|.+ ++.++|+|+||||+||||||++++++.. ...+|+.++|+.++...+...++..|+.+++.....
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~-~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR-IKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH-HCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc-cccccccccccccccccccccccccccccccccccc
Confidence 6789999999987 7799999999999999999999999863 578999999999999999999999999999887432
Q ss_pred ---cchHHHHHHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCccccccccc-ee-EeccCCCH
Q 036714 220 ---NEDKVRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGICRSMGC-KE-VRVQPLSN 294 (932)
Q Consensus 220 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~-~~-~~l~~L~~ 294 (932)
..+.......+ ...+.++++||||||||+...|+.+...++....|++||||||+..++..++. .. +++++|+.
T Consensus 81 ~~~~~~~~~~~~~l-~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQL-RELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHH-HHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccc-hhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 23334444444 44457789999999999999998888777767789999999999999887764 33 99999999
Q ss_pred HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHhcccccCCCCchhHHhH
Q 036714 295 EEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRGRVRSLNGVDTEVFGR 374 (932)
Q Consensus 295 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~ 374 (932)
+||++||.+.++......++..++.+++|+++|+|+|+||+++|++|+.+.+..+|+.+++++........+....++.+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998765422345567889999999999999999999999776677899999999887765444456899999
Q ss_pred hHhhhccCCchhhHHHHHHhhcCCCCcccChHHHHHHHHHhCCccc
Q 036714 375 LEFSYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEE 420 (932)
Q Consensus 375 l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~ 420 (932)
+.+||+.|| +++|+||+|||+||+++.|+++.|+++|+++||+..
T Consensus 240 l~~s~~~L~-~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLP-DELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSH-TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCC-ccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999 699999999999999999999999999999999976
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=8.5e-21 Score=239.46 Aligned_cols=176 Identities=26% Similarity=0.228 Sum_probs=81.8
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCc-ccCcccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIK-VLPSSVSDLMNLRSLLL 571 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~L 571 (932)
+++.|++.+|.+....+..+.++++|++|++++|.....+|..+ .++++|++|++++|.+. .+|..++++++|++|++
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 44555555554443322333444555555555552223334332 44555555555555543 34445555555555555
Q ss_pred ccccccCCCC-ChhccccCcEeecccCCCc-ccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhh
Q 036714 572 RWCENLERVP-SLAKLLALQYLDLEETGIE-EVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALR 649 (932)
Q Consensus 572 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 649 (932)
++|.....+| .+.++.+|++|++++|.+. .+|..+..+++|++|++++|.+....+..++.+++|+.|+++. +....
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~ 346 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS-NKFSG 346 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC-CCCcC
Confidence 5544433444 4555555555555555443 3444445555555555555544322222244555555555542 22222
Q ss_pred hcHHHHHHHHhccceeEEEecC
Q 036714 650 ETVEEAARLSDRLDTFEGIFST 671 (932)
Q Consensus 650 ~~~~~l~~l~~~L~~L~l~~~~ 671 (932)
..+..+..+ .+|+.|+++.|.
T Consensus 347 ~~p~~l~~~-~~L~~L~Ls~n~ 367 (968)
T PLN00113 347 EIPKNLGKH-NNLTVLDLSTNN 367 (968)
T ss_pred cCChHHhCC-CCCcEEECCCCe
Confidence 333444444 555555554443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.2e-23 Score=222.46 Aligned_cols=337 Identities=21% Similarity=0.249 Sum_probs=237.6
Q ss_pred eEEEcccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCc--cCCChhhhccCCceeEEEccC
Q 036714 473 FMVKAGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNL--WTIPECFFVYMHGLKVLNLSR 550 (932)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L~L~~ 550 (932)
++..+...+..+|.......+++|+++.+|.+..+-.. ...++.||++++..| ++ ..+|..+| .+..|++||||.
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N-~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDN-NLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhcc-ccccCCCCchhc-ccccceeeecch
Confidence 44444556778888877788999999999988776443 357899999999988 43 45888875 689999999999
Q ss_pred CCCcccCccccccccccccccccccccCCCC-C-hhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCC
Q 036714 551 TNIKVLPSSVSDLMNLRSLLLRWCENLERVP-S-LAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTG 628 (932)
Q Consensus 551 ~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~ 628 (932)
|.+.+.|..+....++-+|+|++| .+..+| + +-+|..|-+|||++|.+..+|+.+.+|..|+.|.|++|.+..+.-.
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 999999999999999999999984 578899 3 8899999999999999999999999999999999999986644333
Q ss_pred ccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeeccc
Q 036714 629 ILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLE 708 (932)
Q Consensus 629 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 708 (932)
-+..+++|++|+++..+......+..+..+ .+|..++++.|++..+|.-+.. ..
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp~vPecly~-------------------------l~ 245 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLPIVPECLYK-------------------------LR 245 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCCcchHHHhh-------------------------hh
Confidence 356788999999996666666667788888 9999999999888776654332 12
Q ss_pred ceeEEEEeecccccccCcccCCcccceeeEeccCCc--c-ccccccCCccEEEEecCCCCcccccccccccCCCccEEEE
Q 036714 709 VHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDV--A-SLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEV 785 (932)
Q Consensus 709 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~-~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l 785 (932)
.++.|+|++.++....-....-.+|+.|.++.+.-. + .++.+ ++|+.|++.++. ++.-...+.+..|.+|+.++.
T Consensus 246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL-~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL-TKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred hhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh-HHHHHHHhccCc-ccccCCccchhhhhhhHHHHh
Confidence 244455555544433222223345556655555421 1 12222 677777776653 332112234556667777766
Q ss_pred eeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCcccc
Q 036714 786 EDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLS 861 (932)
Q Consensus 786 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp 861 (932)
.+ +.++-++.. +..+++|+.|.|+.+ .|-.+|. +..-+|-|+.|++.+.|+|.--|
T Consensus 324 an-N~LElVPEg----------------lcRC~kL~kL~L~~N-rLiTLPe--aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 324 AN-NKLELVPEG----------------LCRCVKLQKLKLDHN-RLITLPE--AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hc-cccccCchh----------------hhhhHHHHHhccccc-ceeechh--hhhhcCCcceeeccCCcCccCCC
Confidence 65 344433321 567777777777653 4555555 55556777777777777776544
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.2e-20 Score=237.98 Aligned_cols=186 Identities=24% Similarity=0.228 Sum_probs=148.9
Q ss_pred CCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCc-ccCcccccc
Q 036714 485 PGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIK-VLPSSVSDL 563 (932)
Q Consensus 485 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l 563 (932)
|.......+++.+++++|.+....+..+.++++|++|++++|.....+|..+ .++++|++|+|++|.+. .+|..++.+
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcC
Confidence 3333345678899999988765544556788999999999985555666654 88999999999999887 688889999
Q ss_pred ccccccccccccccCCCC-ChhccccCcEeecccCCCc-ccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEe
Q 036714 564 MNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIE-EVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKL 641 (932)
Q Consensus 564 ~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l 641 (932)
++|++|++++|.....+| .++++++|++|++++|.+. .+|..+..+++|++|++++|.+....+..+.++++|+.|++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 999999999987766788 7999999999999999876 57888889999999999999876444444688999999999
Q ss_pred ecCCchhhhcHHHHHHHHhccceeEEEecChh
Q 036714 642 SFGNEALRETVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 642 ~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
+. +......+..+..+ ++|+.|+++.|.+.
T Consensus 316 ~~-n~~~~~~~~~~~~l-~~L~~L~L~~n~l~ 345 (968)
T PLN00113 316 FS-NNFTGKIPVALTSL-PRLQVLQLWSNKFS 345 (968)
T ss_pred CC-CccCCcCChhHhcC-CCCCEEECcCCCCc
Confidence 83 44555566778888 99999999988765
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=5.6e-22 Score=210.98 Aligned_cols=319 Identities=19% Similarity=0.226 Sum_probs=226.4
Q ss_pred ccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-c
Q 036714 480 RLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-S 558 (932)
Q Consensus 480 ~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~ 558 (932)
.+..+|.-.....+++++++.+|.|.++.+....-++.||+|+|+.| .+.++|...|..-.++++|+|++|.|+.+- .
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccc
Confidence 44556655455667888899888888887777777888899999988 788888777777778999999999888663 4
Q ss_pred cccccccccccccccccccCCCC--ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcccCCCccCCCCC
Q 036714 559 SVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKKFPTGILPRLRN 635 (932)
Q Consensus 559 ~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~ 635 (932)
.+..+.+|.+|.|+.| .++.+| .|++|++|+.|+|..|.|+.+ -..+..|++|+.|.+..|.+..+.+|+|-.|.+
T Consensus 192 ~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred cccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence 5677888888888874 467777 588899999999988877654 235678888888889888888888888888999
Q ss_pred cceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEE
Q 036714 636 LYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFL 715 (932)
Q Consensus 636 L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l 715 (932)
+++|+++ .+......-..+-+| ..|+.|++++|.+..+.
T Consensus 271 me~l~L~-~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih--------------------------------------- 309 (873)
T KOG4194|consen 271 MEHLNLE-TNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIH--------------------------------------- 309 (873)
T ss_pred cceeecc-cchhhhhhccccccc-chhhhhccchhhhheee---------------------------------------
Confidence 9999888 455555555677778 88888888877655321
Q ss_pred eecccccccCcccCCcccceeeEeccCCccc---cccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccc
Q 036714 716 IDCKICEREETIVLPEDVQFLQMFEVSDVAS---LNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIE 792 (932)
Q Consensus 716 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~ 792 (932)
.+.+.+++.|+.|+++.+..-+- -...+..|++|.|+++ .+..+ ..+.+..+++|+.|++.+ +.+.
T Consensus 310 --------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l-~e~af~~lssL~~LdLr~-N~ls 378 (873)
T KOG4194|consen 310 --------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHL-AEGAFVGLSSLHKLDLRS-NELS 378 (873)
T ss_pred --------cchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHH-HhhHHHHhhhhhhhcCcC-CeEE
Confidence 11234555666666655542111 1122378889999886 45554 334567788999998887 4454
Q ss_pred cccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCccc-cCCCccc
Q 036714 793 EIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRL-SLSLPLL 867 (932)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~l-p~~l~~l 867 (932)
..+.... . .+.++|+|++|.+.++ +++.++. .....+++||+|++.+.+ +.++ |..+..+
T Consensus 379 ~~IEDaa---------~---~f~gl~~LrkL~l~gN-qlk~I~k-rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m 439 (873)
T KOG4194|consen 379 WCIEDAA---------V---AFNGLPSLRKLRLTGN-QLKSIPK-RAFSGLEALEHLDLGDNA-IASIQPNAFEPM 439 (873)
T ss_pred EEEecch---------h---hhccchhhhheeecCc-eeeecch-hhhccCcccceecCCCCc-ceeecccccccc
Confidence 4443211 0 1557999999999985 7888876 234458899999998754 5554 3344333
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.7e-20 Score=198.32 Aligned_cols=350 Identities=23% Similarity=0.244 Sum_probs=228.8
Q ss_pred ccceeecccccccccCCCcCCC--CCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPH--CDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
..+.++.+.++++.+....... .+.-++|++++| .+..+...+|.++++|+.+++..|.++.+|.......||+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence 3445555555555432111111 234566788777 6777777777778888888888877777777666667777888
Q ss_pred cccccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCch
Q 036714 571 LRWCENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEA 647 (932)
Q Consensus 571 L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 647 (932)
|.+|. +..+. .+.-++.|+.|||+.|.|+++|.. +..=.++++|+|++|+|+.+..+.|.++.+|.+|.++ .+..
T Consensus 132 L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs-rNri 209 (873)
T KOG4194|consen 132 LRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS-RNRI 209 (873)
T ss_pred eeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc-cCcc
Confidence 87743 44444 477777788888888777776542 3333567788888887777777777777777777777 4556
Q ss_pred hhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEeccc-ccCCceeecccceeEEEEeeccccccc-C
Q 036714 648 LRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAY-WMGGFLITDLEVHKSIFLIDCKICERE-E 725 (932)
Q Consensus 648 ~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~-~ 725 (932)
+...+..+..| ++|+.|++..|.+.-.. ++......+|+++.+.-+.. .-++..+..+..++.++|.-..+.... +
T Consensus 210 ttLp~r~Fk~L-~~L~~LdLnrN~irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 210 TTLPQRSFKRL-PKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred cccCHHHhhhc-chhhhhhccccceeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 66666777777 77788777776654322 11112222333333322211 112334455666788888877776543 3
Q ss_pred cccCCcccceeeEeccCC----ccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccch
Q 036714 726 TIVLPEDVQFLQMFEVSD----VASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEE 801 (932)
Q Consensus 726 ~~~~~~~L~~L~l~~~~~----~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~ 801 (932)
++.....|+.|+++.+.. +.+| .+.++|+.|+|+.+ .++.+++ +.+..|..|++|++++ +.+..+....
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N-~i~~l~~-~sf~~L~~Le~LnLs~-Nsi~~l~e~a--- 360 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSN-RITRLDE-GSFRVLSQLEELNLSH-NSIDHLAEGA--- 360 (873)
T ss_pred cccccchhhhhccchhhhheeecchh-hhcccceeEecccc-ccccCCh-hHHHHHHHhhhhcccc-cchHHHHhhH---
Confidence 555678899999988762 2233 45599999999996 5676644 5677888999999998 5666664332
Q ss_pred hhhhhhccccccccccCccceeeccCCcccccccCCCCcc---cCCCccEEEecccCCCccccC----CCcccCC
Q 036714 802 TEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVL---VCNSLQEIEVHRCPKLKRLSL----SLPLLDN 869 (932)
Q Consensus 802 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~---~~p~L~~L~i~~C~~L~~lp~----~l~~l~~ 869 (932)
+.++.+|++|+|+++.- +|+.+++.. .+|+|++|.+.| .+|+.+|. +++.|+.
T Consensus 361 ------------f~~lssL~~LdLr~N~l--s~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 361 ------------FVGLSSLHKLDLRSNEL--SWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred ------------HHHhhhhhhhcCcCCeE--EEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccce
Confidence 66899999999998642 333333332 378999999998 58999986 4555544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=8.1e-19 Score=221.29 Aligned_cols=338 Identities=21% Similarity=0.233 Sum_probs=232.5
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCC-CcccCcccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTN-IKVLPSSVSDLMNLRSL 569 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~lp~~i~~l~~L~~L 569 (932)
+.+++.+.+.++.++.+|... ...+|+.|++.+| .+..++.++ ..+++|++|+|+++. +..+|. ++.+++|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s-~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGS-KLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC--CccCCcEEECcCc-ccccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence 356888999888888888764 4678999999988 787887765 788999999998875 667774 7888999999
Q ss_pred ccccccccCCCC-ChhccccCcEeecccC-CCcccccccccCCCCCEEeCCCCC-CcccCCCccCCCCCcceEEeecCCc
Q 036714 570 LLRWCENLERVP-SLAKLLALQYLDLEET-GIEEVPEGMEMLENLSHLYLSSPR-LKKFPTGILPRLRNLYKLKLSFGNE 646 (932)
Q Consensus 570 ~L~~~~~l~~lp-~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~ 646 (932)
+|++|..+..+| +++++.+|+.|++++| .+..+|..+ ++++|+.|++++|. +..+|. ..++|+.|+++.+ .
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n-~ 736 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDET-A 736 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCC-c
Confidence 999999888888 7899999999999987 788888766 78899999999886 555553 2457788888733 2
Q ss_pred hhhhcHHHHHHHHhccceeEEEecChhhhhhhhc------ccCCCCcceEEEEeccccc-CCceeecccceeEEEEeecc
Q 036714 647 ALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVK------STDGRGLKNYCLLLSAYWM-GGFLITDLEVHKSIFLIDCK 719 (932)
Q Consensus 647 ~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~------~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~ 719 (932)
... .+.. ..+ .+|..|.+..+....+...+. .....+|+.+.+.-..... ....+..+..+..|.+.+|.
T Consensus 737 i~~-lP~~-~~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 737 IEE-FPSN-LRL-ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ccc-cccc-ccc-cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 221 1111 135 667777665432211110000 0011233333332111100 01112334557777777765
Q ss_pred cccccCcccCCcccceeeEeccCCccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeecccccccccccc
Q 036714 720 ICEREETIVLPEDVQFLQMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVED 799 (932)
Q Consensus 720 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~ 799 (932)
.....+....+++|+.|++++|..+..++..+++|+.|+|+++ .++.+|. .+..+++|+.|++++|+.++.++..
T Consensus 814 ~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~-- 888 (1153)
T PLN03210 814 NLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLN-- 888 (1153)
T ss_pred CcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCcc--
Confidence 4332222224678899999999888877777789999999886 5666653 4668899999999999999987653
Q ss_pred chhhhhhhccccccccccCccceeeccCCcccccccCCCC-----------cccCCCccEEEecccCCCcccc
Q 036714 800 EETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNG-----------VLVCNSLQEIEVHRCPKLKRLS 861 (932)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~-----------~~~~p~L~~L~i~~C~~L~~lp 861 (932)
...+++|+.|++++|++|+.++.... ...+|+...+.+.+|.+|..-+
T Consensus 889 --------------~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 889 --------------ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred --------------cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh
Confidence 45789999999999999987654211 1235566777888998876544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.8e-20 Score=200.50 Aligned_cols=345 Identities=21% Similarity=0.268 Sum_probs=222.9
Q ss_pred ccceeecccccccc--cCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 493 NLERVSLMMNDIEE--IPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 493 ~~~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
-+|.+++++|+++. +|... ..+++++.|.+... .+..+|+.+ +.+.+|.+|.+++|++.++-..++.|+.||.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt-~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRT-KLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhH-HHhhheeEEEechh-hhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 46778888888763 33332 35778888888876 788888876 788888888888888888777788888888888
Q ss_pred ccccccc-CCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchh
Q 036714 571 LRWCENL-ERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEAL 648 (932)
Q Consensus 571 L~~~~~l-~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 648 (932)
++.|+.- ..+| .+-+|..|.+|||++|++++.|..+..-+++-.|+|++|+|..+|...+-+|+.|-.|+++ ++-.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS--~NrL 162 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS--NNRL 162 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc--cchh
Confidence 8876532 2466 6888888888888888888888888888888888888888888888888888888888888 3334
Q ss_pred hhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCc--eeecccceeEEEEeecccccccCc
Q 036714 649 RETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGF--LITDLEVHKSIFLIDCKICEREET 726 (932)
Q Consensus 649 ~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~ 726 (932)
...+..+..| .+|++|.++.|.+..+. .-....+.+|..+........-+.. .+..+.++..+.++...+-..++.
T Consensus 163 e~LPPQ~RRL-~~LqtL~Ls~NPL~hfQ-LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec 240 (1255)
T KOG0444|consen 163 EMLPPQIRRL-SMLQTLKLSNNPLNHFQ-LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC 240 (1255)
T ss_pred hhcCHHHHHH-hhhhhhhcCCChhhHHH-HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHH
Confidence 4555677788 88888888877665432 1111111222222222111110111 111223344444444444333333
Q ss_pred ccCCcccceeeEeccCCcc---ccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeecccc--ccccccccch
Q 036714 727 IVLPEDVQFLQMFEVSDVA---SLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSI--EEIVAVEDEE 801 (932)
Q Consensus 727 ~~~~~~L~~L~l~~~~~~~---~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l--~~~~~~~~~~ 801 (932)
+-..++|+.|.++++..-+ ..... .+|++|+++.+ .++.+|. .+..|+.|+.|.+.+. .+ +.++
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~~~~W-~~lEtLNlSrN-QLt~LP~--avcKL~kL~kLy~n~N-kL~FeGiP------ 309 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMTEGEW-ENLETLNLSRN-QLTVLPD--AVCKLTKLTKLYANNN-KLTFEGIP------ 309 (1255)
T ss_pred HhhhhhhheeccCcCceeeeeccHHHH-hhhhhhccccc-hhccchH--HHhhhHHHHHHHhccC-cccccCCc------
Confidence 3344556666666654211 01111 46666666664 3455443 2334556666555442 21 1111
Q ss_pred hhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCccccCCCcccCC
Q 036714 802 TEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLSLPLLDN 869 (932)
Q Consensus 802 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~l~~l~~ 869 (932)
..++.+.+|+.+...++ +|+-+|. +.+.|+.|+.|.+ +|+.|..+|.++..|..
T Consensus 310 ----------SGIGKL~~Levf~aanN-~LElVPE--glcRC~kL~kL~L-~~NrLiTLPeaIHlL~~ 363 (1255)
T KOG0444|consen 310 ----------SGIGKLIQLEVFHAANN-KLELVPE--GLCRCVKLQKLKL-DHNRLITLPEAIHLLPD 363 (1255)
T ss_pred ----------cchhhhhhhHHHHhhcc-ccccCch--hhhhhHHHHHhcc-cccceeechhhhhhcCC
Confidence 11667777888887774 6777777 8888999999999 57899999998877654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=2.7e-18 Score=175.53 Aligned_cols=360 Identities=19% Similarity=0.186 Sum_probs=212.0
Q ss_pred ccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc
Q 036714 480 RLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS 559 (932)
Q Consensus 480 ~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 559 (932)
++..+|.......++..+.+.+|+++.+|+.... ++.|..|++.+| .++.+|+.+ +.+..|..|+|..|.+..+| +
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N-~L~tlP~~l-g~l~~L~~LyL~~Nki~~lP-e 223 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN-LLETLPPEL-GGLESLELLYLRRNKIRFLP-E 223 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh-hhhcCChhh-cchhhhHHHHhhhcccccCC-C
Confidence 4455666555555667777888888888877664 788888888888 888888886 88888888899999988888 6
Q ss_pred ccccccccccccccccccCCCC-C-hhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcc
Q 036714 560 VSDLMNLRSLLLRWCENLERVP-S-LAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLY 637 (932)
Q Consensus 560 i~~l~~L~~L~L~~~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~ 637 (932)
|..|..|..|.++. +.++.+| . ...+.+|.+||++.|.++++|.++..+++|..||+++|.++.+|.. ++++ .|+
T Consensus 224 f~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~ 300 (565)
T KOG0472|consen 224 FPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HLK 300 (565)
T ss_pred CCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcc-cccc-eee
Confidence 88888899998887 4577888 4 5589999999999999999999999999999999999999999988 6888 888
Q ss_pred eEEeecCCchhhhcH----HHH-HHHHhcccee----EEEecChhhh-----hhhhccc--CCCCcceEEEEecccc-cC
Q 036714 638 KLKLSFGNEALRETV----EEA-ARLSDRLDTF----EGIFSTLNDF-----NLYVKST--DGRGLKNYCLLLSAYW-MG 700 (932)
Q Consensus 638 ~L~l~~~~~~~~~~~----~~l-~~l~~~L~~L----~l~~~~~~~~-----~~~~~~~--~~~~L~~~~~~~~~~~-~~ 700 (932)
.|-+.++ ....+.- ..- .-+ +.|++- .++....... +.+.+.. ...+.+.+........ ..
T Consensus 301 ~L~leGN-PlrTiRr~ii~~gT~~vL-KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VP 378 (565)
T KOG0472|consen 301 FLALEGN-PLRTIRREIISKGTQEVL-KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVP 378 (565)
T ss_pred ehhhcCC-chHHHHHHHHcccHHHHH-HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCC
Confidence 8887732 2211100 000 111 223320 1110000000 0000000 0001111111000000 00
Q ss_pred --CceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCccccc---cccCCccEEEEecCCCCcccccccccc
Q 036714 701 --GFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASLN---DFSHDLKVLRFDSCKNLKNLFSLRLLP 775 (932)
Q Consensus 701 --~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~---~~~~~L~~L~L~~c~~l~~l~~~~~l~ 775 (932)
-+..........++++..+++..+..+.....+...-+..++.+..++ ..+++|..|+++++. +.++|. .+.
T Consensus 379 dEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~--e~~ 455 (565)
T KOG0472|consen 379 DEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPE--EMG 455 (565)
T ss_pred HHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcch--hhh
Confidence 001111223556667766666544433333333332223333222222 233899999999874 566654 245
Q ss_pred cCCCccEEEEeeccccccccccccchhhhh--hhc-cc-----cccccccCccceeeccCCcccccccCCCCcccCCCcc
Q 036714 776 ALQNLEVLEVEDCYSIEEIVAVEDEETEKE--LAT-NT-----IINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQ 847 (932)
Q Consensus 776 ~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~--~~~-~~-----~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~ 847 (932)
.+..|+.|+|+. +.+..++..-..-.+-+ ..+ +. +..+..+.+|.+|++.+. .+..+|. +...+.+|+
T Consensus 456 ~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp--~LgnmtnL~ 531 (565)
T KOG0472|consen 456 SLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPP--ILGNMTNLR 531 (565)
T ss_pred hhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhhCCh--hhcccccee
Confidence 677899999987 35555543211100000 000 00 011556777777777764 4667766 444455777
Q ss_pred EEEecccC
Q 036714 848 EIEVHRCP 855 (932)
Q Consensus 848 ~L~i~~C~ 855 (932)
+|.++|.|
T Consensus 532 hLeL~gNp 539 (565)
T KOG0472|consen 532 HLELDGNP 539 (565)
T ss_pred EEEecCCc
Confidence 77777754
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=3e-17 Score=184.92 Aligned_cols=110 Identities=32% Similarity=0.424 Sum_probs=64.0
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRW 573 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (932)
+.++++..|.+-..|-....++-+|.+|++++| .+...|..+ ..+.+|+.|+++.|.|.++|.+++++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccc-ccccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 445555555444433333334444666666666 555555544 555666666666666666666666666666666664
Q ss_pred ccccCCCC-ChhccccCcEeecccCCCccccccc
Q 036714 574 CENLERVP-SLAKLLALQYLDLEETGIEEVPEGM 606 (932)
Q Consensus 574 ~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~ 606 (932)
+.+..+| ++..+.+|++|+++.|.+..+|.-+
T Consensus 101 -n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i 133 (1081)
T KOG0618|consen 101 -NRLQSLPASISELKNLQYLDLSFNHFGPIPLVI 133 (1081)
T ss_pred -chhhcCchhHHhhhcccccccchhccCCCchhH
Confidence 4556666 5666666666666666655555433
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=1e-16 Score=164.09 Aligned_cols=324 Identities=18% Similarity=0.196 Sum_probs=204.5
Q ss_pred ccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc
Q 036714 480 RLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS 559 (932)
Q Consensus 480 ~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 559 (932)
-+..+|...+..+.+..+.++.|++..+| .|+.|..|..|++..| .++.+|....+++.+|.+|||..|.++++|..
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklke~Pde 270 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE 270 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccccCchH
Confidence 35567877777788899999999999998 4789999999999998 89999999888999999999999999999999
Q ss_pred ccccccccccccccccccCCCC-ChhccccCcEeecccCCCcccccccccCC---CCCEEe-------CCCCC---C--c
Q 036714 560 VSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLE---NLSHLY-------LSSPR---L--K 623 (932)
Q Consensus 560 i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~---~L~~L~-------l~~~~---l--~ 623 (932)
++.+.+|.+||+++| .++.+| +++++ +|+.|-+.||.+..+-.++-... -|++|. ++... - .
T Consensus 271 ~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 999999999999974 577788 89999 99999999998887754432211 122221 11110 0 0
Q ss_pred ccCCCc---cCCCCCcceEEeecCCchhhhcHHHHHHHH-hccceeEEEecChhhhhhhhcccCCCCcceEEEEeccccc
Q 036714 624 KFPTGI---LPRLRNLYKLKLSFGNEALRETVEEAARLS-DRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWM 699 (932)
Q Consensus 624 ~~p~~~---l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 699 (932)
..|.+. ...+.+.++|+++ ....+.+..+-+..-. .-....+++.|.+..+|..+..... -.+.+.........
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s-~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lke-lvT~l~lsnn~isf 426 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVS-DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKE-LVTDLVLSNNKISF 426 (565)
T ss_pred CCCCCcccchhhhhhhhhhccc-ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHH-HHHHHHhhcCcccc
Confidence 112222 2345566777776 2233332222222110 2256667777766655543322110 00000000000000
Q ss_pred CCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCccccccccCCcc--EEEEecCCCCcccccccccccC
Q 036714 700 GGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASLNDFSHDLK--VLRFDSCKNLKNLFSLRLLPAL 777 (932)
Q Consensus 700 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~--~L~L~~c~~l~~l~~~~~l~~L 777 (932)
-+......+.+..+++++.-++..+......-.|+.|+++.+ .++.++.++.-++ ++.+.....+..+++ +.+.+|
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~-~~l~nm 504 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDP-SGLKNM 504 (565)
T ss_pred chHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccCh-HHhhhh
Confidence 011222334455566666555554443333445777777766 3333333332222 333444446666654 357789
Q ss_pred CCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCc
Q 036714 778 QNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLR 829 (932)
Q Consensus 778 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 829 (932)
.+|..|++.+ +.++.+++. ++.+.+|++|.+++.|
T Consensus 505 ~nL~tLDL~n-Ndlq~IPp~----------------LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 505 RNLTTLDLQN-NDLQQIPPI----------------LGNMTNLRHLELDGNP 539 (565)
T ss_pred hhcceeccCC-CchhhCChh----------------hccccceeEEEecCCc
Confidence 9999999987 678888875 7799999999999986
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=6.2e-14 Score=164.05 Aligned_cols=251 Identities=19% Similarity=0.197 Sum_probs=115.2
Q ss_pred eecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccc
Q 036714 497 VSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCEN 576 (932)
Q Consensus 497 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 576 (932)
++++.+.++.+|.... ++|+.|++.+| .+..+|. .+++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 206 LdLs~~~LtsLP~~l~---~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~- 273 (788)
T PRK15387 206 LNVGESGLTTLPDCLP---AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP- 273 (788)
T ss_pred EEcCCCCCCcCCcchh---cCCCEEEccCC-cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc-
Confidence 4444445554444322 24555555555 4444443 234555555555555555432 2345555555532
Q ss_pred cCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHH
Q 036714 577 LERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAA 656 (932)
Q Consensus 577 l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 656 (932)
+..+|. .+.+|+.|++++|.++.+|.. +++|+.|++++|.+..+|.. ..+|+.|+++.+ .+.. +.
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N-~L~~-----LP 338 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL----PSELCKLWAYNN-QLTS-----LP 338 (788)
T ss_pred hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC----cccccccccccC-cccc-----cc
Confidence 333432 113455555555555555532 34455555555555554431 123444444421 1111 11
Q ss_pred HHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCccccee
Q 036714 657 RLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFL 736 (932)
Q Consensus 657 ~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L 736 (932)
.+..+|+.|+++.|.+..+|... ..+..+.+..+.+.... ..+.+|+.|
T Consensus 339 ~lp~~Lq~LdLS~N~Ls~LP~lp----------------------------~~L~~L~Ls~N~L~~LP---~l~~~L~~L 387 (788)
T PRK15387 339 TLPSGLQELSVSDNQLASLPTLP----------------------------SELYKLWAYNNRLTSLP---ALPSGLKEL 387 (788)
T ss_pred ccccccceEecCCCccCCCCCCC----------------------------cccceehhhccccccCc---ccccccceE
Confidence 11134555555555444322110 00111222222222111 122456666
Q ss_pred eEeccCCccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccc
Q 036714 737 QMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVT 816 (932)
Q Consensus 737 ~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (932)
+++++. +..++...++|+.|++++|. ++.+|.. ..+|+.|++++ +.++.++.. +..
T Consensus 388 dLs~N~-Lt~LP~l~s~L~~LdLS~N~-LssIP~l-----~~~L~~L~Ls~-NqLt~LP~s----------------l~~ 443 (788)
T PRK15387 388 IVSGNR-LTSLPVLPSELKELMVSGNR-LTSLPML-----PSGLLSLSVYR-NQLTRLPES----------------LIH 443 (788)
T ss_pred EecCCc-ccCCCCcccCCCEEEccCCc-CCCCCcc-----hhhhhhhhhcc-CcccccChH----------------Hhh
Confidence 666553 22333334677777777764 4555432 23566677766 445555432 446
Q ss_pred cCccceeeccCCc
Q 036714 817 LPRLKKFYLWGLR 829 (932)
Q Consensus 817 ~p~L~~L~L~~~~ 829 (932)
+++|+.|+|++++
T Consensus 444 L~~L~~LdLs~N~ 456 (788)
T PRK15387 444 LSSETTVNLEGNP 456 (788)
T ss_pred ccCCCeEECCCCC
Confidence 7777777777764
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=9e-16 Score=139.21 Aligned_cols=147 Identities=24% Similarity=0.388 Sum_probs=103.4
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLL 571 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L 571 (932)
+++.++.+++|+++.+|+.+ ..+.+|++|++++| .++++|.++ +.++.||.|+++-|.+..+|..++.++.|+.|+|
T Consensus 33 s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nn-qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNN-QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcH-HHhhhhhhhhcccc-hhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 35667777777777776654 46677777777776 677777665 6777777777777777777777777777777777
Q ss_pred ccccccC-CCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 572 RWCENLE-RVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 572 ~~~~~l~-~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
.+|+.-+ .+| .|-.+..|+-|.++.|.+.-+|+.++++++|+.|.+..|.+-.+|.+ ++.++.|++|++.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiq 181 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQ 181 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcc
Confidence 7655432 456 56677777777777777777777777777777777777777677766 3677777777766
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=2.3e-13 Score=159.39 Aligned_cols=247 Identities=20% Similarity=0.209 Sum_probs=173.9
Q ss_pred ccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC
Q 036714 478 GLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP 557 (932)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 557 (932)
...++.+|.. ...+++.|.+.+|+++.+|.. +++|++|++++| .+..+|. ..++|+.|++++|.++.+|
T Consensus 210 ~~~LtsLP~~--l~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~----lp~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 210 ESGLTTLPDC--LPAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLTHLP 278 (788)
T ss_pred CCCCCcCCcc--hhcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccC----cccccceeeccCCchhhhh
Confidence 3355667764 345789999999999988752 478999999998 7888874 2468999999999998888
Q ss_pred ccccccccccccccccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcc
Q 036714 558 SSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLY 637 (932)
Q Consensus 558 ~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~ 637 (932)
.. ..+|+.|++++| .++.+|. .+++|+.|++++|.++.+|.. ..+|+.|++++|.+..+|.. ..+|+
T Consensus 279 ~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l----p~~Lq 345 (788)
T PRK15387 279 AL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL----PSGLQ 345 (788)
T ss_pred hc---hhhcCEEECcCC-ccccccc--cccccceeECCCCccccCCCC---cccccccccccCcccccccc----ccccc
Confidence 63 356888899886 4677774 246899999999999888763 34677888999988888752 25788
Q ss_pred eEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEee
Q 036714 638 KLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLID 717 (932)
Q Consensus 638 ~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 717 (932)
.|+++. +.+.... . +..+|+.|+++.|.+..++... ..+..+.+..
T Consensus 346 ~LdLS~-N~Ls~LP-~----lp~~L~~L~Ls~N~L~~LP~l~----------------------------~~L~~LdLs~ 391 (788)
T PRK15387 346 ELSVSD-NQLASLP-T----LPSELYKLWAYNNRLTSLPALP----------------------------SGLKELIVSG 391 (788)
T ss_pred eEecCC-CccCCCC-C----CCcccceehhhccccccCcccc----------------------------cccceEEecC
Confidence 999984 3333221 1 1156777777777665443211 1244555555
Q ss_pred cccccccCcccCCcccceeeEeccCCccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeecc
Q 036714 718 CKICEREETIVLPEDVQFLQMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCY 789 (932)
Q Consensus 718 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~ 789 (932)
+.+..... .+++|+.|+++++. +..++..+.+|+.|++++|. ++.+|. .+..+++|+.|++++++
T Consensus 392 N~Lt~LP~---l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~Nq-Lt~LP~--sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 392 NRLTSLPV---LPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQ-LTRLPE--SLIHLSSETTVNLEGNP 456 (788)
T ss_pred CcccCCCC---cccCCCEEEccCCc-CCCCCcchhhhhhhhhccCc-ccccCh--HHhhccCCCeEECCCCC
Confidence 55543222 34689999999876 44455555789999999874 667754 35678899999999853
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=1.1e-15 Score=138.72 Aligned_cols=156 Identities=28% Similarity=0.396 Sum_probs=139.3
Q ss_pred CCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-ChhccccCcEe
Q 036714 514 HCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYL 592 (932)
Q Consensus 514 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 592 (932)
+++++..|.+++| .+..+|+.+ ..+++|++|++++|+++++|.+++.++.|+.|++.- +.+..+| .|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccC-ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence 6678888999999 888899887 889999999999999999999999999999999986 5577889 89999999999
Q ss_pred ecccCCCc--ccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEec
Q 036714 593 DLEETGIE--EVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFS 670 (932)
Q Consensus 593 ~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 670 (932)
|+..|++. .+|..+..++.|+.|+++.|.+.-+|+.+ +++++||.|.+.. +.....+++++.+ .+|++|++.+|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrd--ndll~lpkeig~l-t~lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRD--NDLLSLPKEIGDL-TRLRELHIQGN 183 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh-hhhcceeEEeecc--CchhhCcHHHHHH-HHHHHHhcccc
Confidence 99999776 68999999999999999999999999995 9999999999983 3344567899999 99999999988
Q ss_pred Chhhhh
Q 036714 671 TLNDFN 676 (932)
Q Consensus 671 ~~~~~~ 676 (932)
.+.-+|
T Consensus 184 rl~vlp 189 (264)
T KOG0617|consen 184 RLTVLP 189 (264)
T ss_pred eeeecC
Confidence 876554
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.46 E-value=5.8e-12 Score=158.54 Aligned_cols=291 Identities=15% Similarity=0.194 Sum_probs=181.1
Q ss_pred cccccccchHHHHHHHHHHhcC-CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHH
Q 036714 133 MATLAGEKTKKVVEEIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIA 210 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~ 210 (932)
...++-| ....+ .|.. ...+++.|+|++|.||||++.++.+.. + .++|+++.. +.+...+...++
T Consensus 13 ~~~~~~R--~rl~~----~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 13 LHNTVVR--ERLLA----KLSGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred ccccCcc--hHHHH----HHhcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHH
Confidence 3566777 33333 3332 347899999999999999999988532 2 589999864 446667777777
Q ss_pred HHHhcccccc-------------chHHHHHHHHHHHHhc-CCeEEEEEeccccccc--cc-cccCCCCCCCCCcEEEEEe
Q 036714 211 TALKQSLLEN-------------EDKVRRAGELLGMLKA-KEKFVLILDDMWEAFR--LE-EVGIPEPSEENGCKLVVTT 273 (932)
Q Consensus 211 ~~l~~~~~~~-------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~--~~-~l~~~~~~~~~gs~iivTT 273 (932)
..++...... .+.......++..+.. +.+++|||||+...++ .. .+...+.....+.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 7775321110 1112233344444443 6799999999975321 11 2222222224566888999
Q ss_pred CCcccccc--cc-cee-Eecc----CCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCC
Q 036714 274 RSVGICRS--MG-CKE-VRVQ----PLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVD 345 (932)
Q Consensus 274 R~~~v~~~--~~-~~~-~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~ 345 (932)
|...-... .. ... .++. +|+.+|+..+|....+..- ..+.+.+|.+.|+|+|+++..++..++...
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~ 233 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNN 233 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 98422111 11 111 4555 8999999999988766431 245678899999999999999988776533
Q ss_pred chHHHHHHHHHHhcccccCCCCchhHHhHhHhh-hccCCchhhHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccchhh
Q 036714 346 EIHEWRNALNELRGRVRSLNGVDTEVFGRLEFS-YHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDV 424 (932)
Q Consensus 346 ~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~s-y~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~ 424 (932)
... ......+.. .....+...+.-. ++.|| +..+..++..|+++ .++.+. .. .+.
T Consensus 234 ~~~--~~~~~~~~~------~~~~~~~~~l~~~v~~~l~-~~~~~~l~~~a~~~---~~~~~l-~~-----~l~------ 289 (903)
T PRK04841 234 SSL--HDSARRLAG------INASHLSDYLVEEVLDNVD-LETRHFLLRCSVLR---SMNDAL-IV-----RVT------ 289 (903)
T ss_pred Cch--hhhhHhhcC------CCchhHHHHHHHHHHhcCC-HHHHHHHHHhcccc---cCCHHH-HH-----HHc------
Confidence 210 011111100 0123355544333 78999 79999999999987 244222 21 111
Q ss_pred hhHHhHHHHHHHHHHHcccccc-cC-CCCEEEeCchhHHHHHHhhc
Q 036714 425 QAKYDRGHTILNRLVNCCLLES-AK-DGRCVKMHDLIRDMALSITS 468 (932)
Q Consensus 425 ~~~~~~~~~~l~~L~~~~ll~~-~~-~~~~~~mHdlv~d~a~~~~~ 468 (932)
..+.+...+++|.+.+++.. .+ .+.+|+.|+++++++++...
T Consensus 290 --~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 290 --GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred --CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 12345678999999999653 33 34689999999999998763
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=7.8e-13 Score=156.07 Aligned_cols=132 Identities=23% Similarity=0.438 Sum_probs=80.3
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRW 573 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (932)
...+.+.+++++.+|.... ++|+.|++++| .+..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP---EQITTLILDNN-ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCcccc---cCCcEEEecCC-CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 3456666666666654332 45677777776 6666666542 467777777777777765443 3577777776
Q ss_pred ccccCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 574 CENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 574 ~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
|. +..+| .+. .+|+.|++++|.+..+|..+. ++|+.|++++|.++.+|..+ . ++|+.|+++
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l-p--~sL~~L~Ls 312 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL-P--SGITHLNVQ 312 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc-h--hhHHHHHhc
Confidence 54 44556 332 467777777777776666543 46777777777766666432 1 345555555
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.37 E-value=7.1e-14 Score=158.10 Aligned_cols=142 Identities=30% Similarity=0.370 Sum_probs=117.4
Q ss_pred eecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccc
Q 036714 497 VSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCEN 576 (932)
Q Consensus 497 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 576 (932)
++++...++-+|...+.+-. +..|++..| .+-..|-.+..+.-+|+.|++++|.+..+|..++.+++|+.|+++. +.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~-~~~ln~~~N-~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEA-LQILNLRRN-SLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NY 79 (1081)
T ss_pred cccccccCcccchhhccHHH-HHhhhcccc-ccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccch-hh
Confidence 44455556666665554433 888899988 5555666677777779999999999999999999999999999997 56
Q ss_pred cCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 577 LERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 577 l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
+...| ++.++.+|++|+|.+|.+..+|.++..+++|++|++++|.+..+|.- +..++.+..+..+
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAAS 145 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhh
Confidence 88899 89999999999999999999999999999999999999999888875 4666666666555
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=1.4e-12 Score=154.03 Aligned_cols=171 Identities=22% Similarity=0.326 Sum_probs=128.8
Q ss_pred ccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC
Q 036714 478 GLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP 557 (932)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 557 (932)
+..++.+|.. .+..++.+++++|+++.+|...+ ++|++|++++| .+..+|..+. .+|+.|+|++|.+..+|
T Consensus 187 ~~~LtsLP~~--Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~---~~L~~L~Ls~N~L~~LP 257 (754)
T PRK15370 187 ILGLTTIPAC--IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP---DTIQEMELSINRITELP 257 (754)
T ss_pred CCCcCcCCcc--cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh---ccccEEECcCCccCcCC
Confidence 3455667653 35679999999999999987654 58999999999 7888987653 47999999999999999
Q ss_pred ccccccccccccccccccccCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCc
Q 036714 558 SSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNL 636 (932)
Q Consensus 558 ~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L 636 (932)
..+. .+|++|++++| .++.+| .+. .+|++|++++|.++.+|..+. .+|++|++++|.+..+|..+ .++|
T Consensus 258 ~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l---~~sL 327 (754)
T PRK15370 258 ERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL---PPGL 327 (754)
T ss_pred hhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc---cccc
Confidence 8764 58999999975 577788 454 589999999999999987653 47999999999999888653 3578
Q ss_pred ceEEeecCCchhhhcHHHHHHHHhccceeEEEecCh
Q 036714 637 YKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 637 ~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
+.|+++.+ .+... +.. ++++|+.|+++.|.+
T Consensus 328 ~~L~Ls~N-~Lt~L-P~~---l~~sL~~L~Ls~N~L 358 (754)
T PRK15370 328 KTLEAGEN-ALTSL-PAS---LPPELQVLDVSKNQI 358 (754)
T ss_pred eeccccCC-ccccC-Chh---hcCcccEEECCCCCC
Confidence 88888743 22221 111 125666666665544
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.36 E-value=4.8e-14 Score=144.76 Aligned_cols=139 Identities=26% Similarity=0.392 Sum_probs=112.2
Q ss_pred ccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-CccccccccccccccccccccC
Q 036714 500 MMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLRWCENLE 578 (932)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~ 578 (932)
+..+++++|...- +.-..+.|..| .+..+|+..|+.+++||.||||.|.|+.+ |..+..+.+|..|-+-+++.++
T Consensus 54 r~~GL~eVP~~LP---~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 54 RGKGLTEVPANLP---PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cCCCcccCcccCC---CcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 3345566655432 34556778887 88888888889999999999999998865 7778888888888888878889
Q ss_pred CCC--ChhccccCcEeecccCCCcccc-cccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 579 RVP--SLAKLLALQYLDLEETGIEEVP-EGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 579 ~lp--~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
++| .|++|..|+-|.+.-|.+..++ ..+..|++|..|.+..|.+..++.+.+..+..++++++.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 998 5999999999999888888664 457889999999999999999988888889999988876
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-13 Score=140.71 Aligned_cols=195 Identities=24% Similarity=0.257 Sum_probs=139.3
Q ss_pred EcccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccC-CCCc
Q 036714 476 KAGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSR-TNIK 554 (932)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~ 554 (932)
..+..++++|.. .+.....|.+..|.|+.+|+..|..+++||.|+|++| .+..|.+..|.+++.|..|-+-+ |.|+
T Consensus 53 Cr~~GL~eVP~~--LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 53 CRGKGLTEVPAN--LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ccCCCcccCccc--CCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 345677888875 5677888999999999999999999999999999999 88888888888888877766555 7788
Q ss_pred ccCcc-ccccccccccccccccc-----------------------cCCCC--ChhccccCcEeecccCC-Cc--ccc--
Q 036714 555 VLPSS-VSDLMNLRSLLLRWCEN-----------------------LERVP--SLAKLLALQYLDLEETG-IE--EVP-- 603 (932)
Q Consensus 555 ~lp~~-i~~l~~L~~L~L~~~~~-----------------------l~~lp--~~~~l~~L~~L~l~~~~-i~--~lp-- 603 (932)
.+|.. +..|..|+.|.+.-|.. +..++ ++..+.+++++.+..|. +. .+|
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 88764 45555555555554321 22333 34555555665555442 10 111
Q ss_pred ----------------------------------------------------------cccccCCCCCEEeCCCCCCccc
Q 036714 604 ----------------------------------------------------------EGMEMLENLSHLYLSSPRLKKF 625 (932)
Q Consensus 604 ----------------------------------------------------------~~~~~l~~L~~L~l~~~~l~~~ 625 (932)
..+..|++|+.|++++|.++.+
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence 1234678888888888888888
Q ss_pred CCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhh
Q 036714 626 PTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDF 675 (932)
Q Consensus 626 p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 675 (932)
.++.|.++..+++|.+. .+.+..+.-.-+.++ ..|+.|++..|.++.+
T Consensus 290 ~~~aFe~~a~l~eL~L~-~N~l~~v~~~~f~~l-s~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 290 EDGAFEGAAELQELYLT-RNKLEFVSSGMFQGL-SGLKTLSLYDNQITTV 337 (498)
T ss_pred hhhhhcchhhhhhhhcC-cchHHHHHHHhhhcc-ccceeeeecCCeeEEE
Confidence 88888888888888887 456666666677788 8888888888877643
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=4.8e-13 Score=160.26 Aligned_cols=298 Identities=22% Similarity=0.289 Sum_probs=184.6
Q ss_pred ccceeeccccc--ccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 493 NLERVSLMMND--IEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 493 ~~~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
+++.+-+..|. +..++...|..++.|++|++++|..+..+|.++ +.+-+||||+++++.++.+|.++.+|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 68888888885 677777778899999999999999999999987 899999999999999999999999999999999
Q ss_pred cccccccCCCCC-hhccccCcEeecccCCCcccc---cccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec--C
Q 036714 571 LRWCENLERVPS-LAKLLALQYLDLEETGIEEVP---EGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF--G 644 (932)
Q Consensus 571 L~~~~~l~~lp~-~~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~--~ 644 (932)
+..+..+..+|. ...|++|++|.+.......-. ..+..|.+|+.+....... .+-.. +..+..|..+...- +
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~-l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLED-LLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhh-hhhhHHHHHHhHhhhhc
Confidence 999888888884 666999999999776422111 2333444444444433322 11111 23334443322210 1
Q ss_pred CchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeeccccccc
Q 036714 645 NEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICERE 724 (932)
Q Consensus 645 ~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 724 (932)
..........+..+ .+|+.|.+..+........... .
T Consensus 703 ~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~~~~------------------------------------------~ 739 (889)
T KOG4658|consen 703 GCSKRTLISSLGSL-GNLEELSILDCGISEIVIEWEE------------------------------------------S 739 (889)
T ss_pred ccccceeecccccc-cCcceEEEEcCCCchhhccccc------------------------------------------c
Confidence 12223334455666 7777777776654322110000 0
Q ss_pred Cccc-CCcccceeeEeccCCccccc--cccCCccEEEEecCCCCcccccccccccCCCccEEEEeecccccccc-ccccc
Q 036714 725 ETIV-LPEDVQFLQMFEVSDVASLN--DFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIV-AVEDE 800 (932)
Q Consensus 725 ~~~~-~~~~L~~L~l~~~~~~~~l~--~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~-~~~~~ 800 (932)
.... ..+++..+.+.+|..+..+. .+.|+|+.|.+..|+.+++..+ ....+..++.+.+.. +.++... ...
T Consensus 740 ~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~~i~~f-~~~~~l~~~~~-- 814 (889)
T KOG4658|consen 740 LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP--KLKALLELKELILPF-NKLEGLRMLCS-- 814 (889)
T ss_pred cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC--HHHHhhhcccEEecc-cccccceeeec--
Confidence 0000 12345555566665554433 5668999999999988887433 233333444322222 2222221 100
Q ss_pred hhhhhhhccccccccccC----------ccceeeccCCcccccccCCCCcccCCCccEEEeccc-CCCccccCC
Q 036714 801 ETEKELATNTIINIVTLP----------RLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRC-PKLKRLSLS 863 (932)
Q Consensus 801 ~~~~~~~~~~~~~~~~~p----------~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C-~~L~~lp~~ 863 (932)
.++|| +|..+.+..||++.. +|.+.++.+.+| +++...|.+
T Consensus 815 -------------l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~---------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 815 -------------LGGLPQLYWLPLSFLKLEELIVEECPKLGK---------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred -------------CCCCceeEecccCccchhheehhcCccccc---------CccccccceeccccceeecCCc
Confidence 22344 455555555554444 456788888887 888888865
No 25
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.30 E-value=2.4e-10 Score=129.84 Aligned_cols=296 Identities=18% Similarity=0.211 Sum_probs=191.9
Q ss_pred CCcccccccchHHHHHHHHHHhcCC-CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-cCHHHHHHH
Q 036714 131 LTMATLAGEKTKKVVEEIWEDLMGD-KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LYLIKLQTE 208 (932)
Q Consensus 131 ~~~~~~vGr~~~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~ 208 (932)
.++...|-| .++.+.|... +.+++.|..|+|.|||||+.+++... ..-..+.|.+.... .++.++...
T Consensus 16 ~~~~~~v~R------~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 16 VRPDNYVVR------PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred CCccccccc------HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHH
Confidence 334556666 3455666554 68999999999999999999998732 45567999997654 578888898
Q ss_pred HHHHHhccccccchHHH-------------HHHHHHHHHh-cCCeEEEEEeccccc---cccccccCCCCCCCCCcEEEE
Q 036714 209 IATALKQSLLENEDKVR-------------RAGELLGMLK-AKEKFVLILDDMWEA---FRLEEVGIPEPSEENGCKLVV 271 (932)
Q Consensus 209 i~~~l~~~~~~~~~~~~-------------~~~~l~~~l~-~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iiv 271 (932)
++..++.-.+...+... ....++..+. -.++..+||||..-. ..-..+...+.....+-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 88888754433222221 2333333332 146899999997632 212222222333346778999
Q ss_pred EeCCccccccc--cc-ee-Eecc----CCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcC
Q 036714 272 TTRSVGICRSM--GC-KE-VRVQ----PLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRG 343 (932)
Q Consensus 272 TTR~~~v~~~~--~~-~~-~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~ 343 (932)
|||+.--.... .. +. +++. .++.+|+-++|....+.. -.+..++.+.+..+|.+-|+..++=.++.
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 99986332211 11 11 3333 388999999998875432 33567889999999999999999999885
Q ss_pred CCchHHHHHHHHHHhcccccCCCCchhHHh-HhHhhhccCCchhhHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccch
Q 036714 344 VDEIHEWRNALNELRGRVRSLNGVDTEVFG-RLEFSYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVK 422 (932)
Q Consensus 344 ~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~ 422 (932)
+.+.+.--..++ +..+.+.+ ...--++.|| +++|..++-||+++.-. ..|+..
T Consensus 240 ~~~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp-~~l~~FLl~~svl~~f~----~eL~~~----------- 293 (894)
T COG2909 240 NTSAEQSLRGLS----------GAASHLSDYLVEEVLDRLP-PELRDFLLQTSVLSRFN----DELCNA----------- 293 (894)
T ss_pred CCcHHHHhhhcc----------chHHHHHHHHHHHHHhcCC-HHHHHHHHHHHhHHHhh----HHHHHH-----------
Confidence 443322111111 11111111 1223368899 79999999999985421 222222
Q ss_pred hhhhHHhHHHHHHHHHHHccccc-ccC-CCCEEEeCchhHHHHHHhhccC
Q 036714 423 DVQAKYDRGHTILNRLVNCCLLE-SAK-DGRCVKMHDLIRDMALSITSES 470 (932)
Q Consensus 423 ~~~~~~~~~~~~l~~L~~~~ll~-~~~-~~~~~~mHdlv~d~a~~~~~~~ 470 (932)
-+.++.+..++++|.+++|+- +.+ ++.+|+.|.+..||.+.....+
T Consensus 294 --Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 294 --LTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred --HhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 233466788899999999864 443 4589999999999999887664
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=7.7e-09 Score=110.16 Aligned_cols=182 Identities=17% Similarity=0.223 Sum_probs=112.3
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHH----H
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGE----L 230 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----l 230 (932)
...+++.|+|++|+||||+++.+++.... ... .+.|+ +....+..+++..|+..++.+... .+....... +
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~--~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQ--ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCC--CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 34578999999999999999999988631 111 22333 333456778889999888765432 222222222 2
Q ss_pred HHHHhcCCeEEEEEecccccc--ccccccC---CCCCCCCCcEEEEEeCCccc---cc----ccc---ceeEeccCCCHH
Q 036714 231 LGMLKAKEKFVLILDDMWEAF--RLEEVGI---PEPSEENGCKLVVTTRSVGI---CR----SMG---CKEVRVQPLSNE 295 (932)
Q Consensus 231 ~~~l~~~kr~LlVlDdv~~~~--~~~~l~~---~~~~~~~gs~iivTTR~~~v---~~----~~~---~~~~~l~~L~~~ 295 (932)
......+++.++|+||++... .++.+.. ..........|++|....-. .. ... ...+.+++++.+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 223346788999999998742 3443321 11111223345566543211 00 011 112789999999
Q ss_pred HHHHHHHHhhCCCCCC-CChhhHHHHHHHHHHcCCCcHHHHHHHhhh
Q 036714 296 EALNLFLDKVGSSTLQ-IPTLDKKIINLVVEECAGLPLAIVTVAGCM 341 (932)
Q Consensus 296 ~~~~lf~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 341 (932)
|..+++...+...... ...-..+..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999998766432111 122345789999999999999999988765
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.12 E-value=3.6e-08 Score=110.07 Aligned_cols=294 Identities=15% Similarity=0.163 Sum_probs=167.6
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCC---cEEEEEEECCccCHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF---NVVIWVTVSQPLYLIKLQ 206 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~ 206 (932)
..++|| ++++++|..++. +...+.+.|+|++|+|||++++.+++......... -..+|+++....+...++
T Consensus 15 ~~l~gR--e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHR--DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCc--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 479999 778888877764 34457899999999999999999999864322211 245677777766778889
Q ss_pred HHHHHHHh---cccccc-chHHHHHHHHHHHHh-cCCeEEEEEecccccc-c----cccccCC--CCC-CCCCcEEEEEe
Q 036714 207 TEIATALK---QSLLEN-EDKVRRAGELLGMLK-AKEKFVLILDDMWEAF-R----LEEVGIP--EPS-EENGCKLVVTT 273 (932)
Q Consensus 207 ~~i~~~l~---~~~~~~-~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~-~----~~~l~~~--~~~-~~~gs~iivTT 273 (932)
..|++++. ...... .+..+....+.+.+. .+++++||||+++... . +..+... ... .+....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999883 222111 122233344444443 3568999999998641 1 2222211 010 11233455555
Q ss_pred CCcccc--------ccccceeEeccCCCHHHHHHHHHHhhCC--CCCCCChhhHHHHHHHHHHcCCCcHHHHHHH-hhh-
Q 036714 274 RSVGIC--------RSMGCKEVRVQPLSNEEALNLFLDKVGS--STLQIPTLDKKIINLVVEECAGLPLAIVTVA-GCM- 341 (932)
Q Consensus 274 R~~~v~--------~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~-~~L- 341 (932)
+..... .......+.+++.+.++..+++..++.. ......++..+.+.+++....|.|..+..+. .+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 543321 1122223899999999999999987641 1111334444555667777789885543322 211
Q ss_pred ---cC-C--CchHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCCchhhHHHHHHhhcC--CCCcccChHHHHHHHH
Q 036714 342 ---RG-V--DEIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKVQQCFLYCALY--PEDFAIPKDELIDYWI 413 (932)
Q Consensus 342 ---~~-~--~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~f--p~~~~i~~~~Li~~w~ 413 (932)
.. . -+.+..+.+.+.+. .....-++..|| .+.|..+..++.. ..+..+...++...+-
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~-~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLP-THSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 11 1 22344444444331 122334567888 5555444444321 1334466666666331
Q ss_pred --HhCCcccchhhhhHHhHHHHHHHHHHHccccccc
Q 036714 414 --AEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 447 (932)
Q Consensus 414 --a~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 447 (932)
++.+ . -....+.....+++.|...|+++..
T Consensus 319 ~~~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDI-G---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhc-C---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2211 0 0112346778889999999999864
No 28
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.09 E-value=2.3e-08 Score=112.80 Aligned_cols=292 Identities=16% Similarity=0.152 Sum_probs=163.7
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
..++|| ++++++|...+. +.....+.|+|++|+|||++++.++++.... ...-.++++++....+...++..|
T Consensus 30 ~~l~~R--e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~-~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 30 ENLPHR--EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI-AVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCH--HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEECCcCCCHHHHHHHH
Confidence 579999 677777777663 3445678899999999999999999987432 223356677777667778888999
Q ss_pred HHHHhcc-ccc-cchHHHHHHHHHHHHh-cCCeEEEEEecccccc------ccccccCCCCCCCCCc--EEEEEeCCccc
Q 036714 210 ATALKQS-LLE-NEDKVRRAGELLGMLK-AKEKFVLILDDMWEAF------RLEEVGIPEPSEENGC--KLVVTTRSVGI 278 (932)
Q Consensus 210 ~~~l~~~-~~~-~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs--~iivTTR~~~v 278 (932)
+.++... ... ..+.......+.+.+. .+++.+||||+++... .+..+..... ...++ .+|.+++...+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcch
Confidence 9988652 111 1122233344444443 3567899999998632 2223322111 11232 36666665433
Q ss_pred cc--------cccceeEeccCCCHHHHHHHHHHhhCCC--CCCCCh-hhHHHHHHHHHHcCCCcHHHHHHHhhh----c-
Q 036714 279 CR--------SMGCKEVRVQPLSNEEALNLFLDKVGSS--TLQIPT-LDKKIINLVVEECAGLPLAIVTVAGCM----R- 342 (932)
Q Consensus 279 ~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~-~~~~~~~~i~~~~~G~Plai~~~~~~L----~- 342 (932)
.. ..+...+.+++++.++..+++...+... ....++ .++.+++......|..+.|+.++-.+. .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22 2222238999999999999999876321 111222 223333333333455777777664332 1
Q ss_pred CC--CchHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCCchhhHHHHHHhhcC-CC-CcccChHHHHHH--HHHhC
Q 036714 343 GV--DEIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKVQQCFLYCALY-PE-DFAIPKDELIDY--WIAEG 416 (932)
Q Consensus 343 ~~--~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~f-p~-~~~i~~~~Li~~--w~a~g 416 (932)
+. -+.+..+.+++.+. .....-.+..|| .+.|..+..++.. .. ...+....+... .+++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~-~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLP-LHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 11 13445555555441 122334577888 4444443333322 21 134555555533 22221
Q ss_pred CcccchhhhhHHhHHHHHHHHHHHccccccc
Q 036714 417 FIEEVKDVQAKYDRGHTILNRLVNCCLLESA 447 (932)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 447 (932)
+-.. .........+++.|...|+|+..
T Consensus 332 ~~~~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYE----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCC----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1100 11234567799999999999854
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.09 E-value=3.3e-09 Score=115.09 Aligned_cols=275 Identities=15% Similarity=0.115 Sum_probs=145.2
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTE 208 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 208 (932)
.+|+|+ ++.++.|..++. ......+.++|++|+|||+||+.+++... ..+ ..+..+.......+. .
T Consensus 4 ~~~iG~--~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~---~~~~~~~~~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQ--EKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VNL---KITSGPALEKPGDLA-A 74 (305)
T ss_pred HHHcCH--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCE---EEeccchhcCchhHH-H
Confidence 468999 667777777765 23456788999999999999999999762 121 122221111122221 2
Q ss_pred HHHHHhccccccchHH----HHHHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCcccccccc-
Q 036714 209 IATALKQSLLENEDKV----RRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGICRSMG- 283 (932)
Q Consensus 209 i~~~l~~~~~~~~~~~----~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~- 283 (932)
.+..++...----|+. ......+..+..+.+..+|+|+..+...+.. +++ +.+-|..||+...+.....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHh
Confidence 2222221100000000 0111122222344455666666555443331 121 2455666777654443211
Q ss_pred --ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHhccc
Q 036714 284 --CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRGRV 361 (932)
Q Consensus 284 --~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~ 361 (932)
...+++++++.++..+++.+.++.... .-..+.+..|++.|+|.|..+..++..+ |..+. ......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCC
Confidence 112789999999999999988764332 2234667889999999997765554432 11100 000000
Q ss_pred ccCCCCchhHHhHhHhhhccCCchhhHHHHH-HhhcCCCCcccChHHHHHHHHHhCCcccchhhhhHHhHHHHHHH-HHH
Q 036714 362 RSLNGVDTEVFGRLEFSYHRLKHEKVQQCFL-YCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILN-RLV 439 (932)
Q Consensus 362 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~l~-~L~ 439 (932)
.. ...-......+...|..++ +..+..+. .++.++.+ .++...+.... ......++..++ .|+
T Consensus 217 it-~~~v~~~l~~l~~~~~~l~-~~~~~~L~al~~~~~~~-~~~~~~ia~~l------------g~~~~~~~~~~e~~Li 281 (305)
T TIGR00635 217 IN-RDIALKALEMLMIDELGLD-EIDRKLLSVLIEQFQGG-PVGLKTLAAAL------------GEDADTIEDVYEPYLL 281 (305)
T ss_pred cC-HHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHhCCC-cccHHHHHHHh------------CCCcchHHHhhhHHHH
Confidence 00 0000122233556678888 55555555 45666544 34444333221 122345667788 699
Q ss_pred HcccccccCCC
Q 036714 440 NCCLLESAKDG 450 (932)
Q Consensus 440 ~~~ll~~~~~~ 450 (932)
+++|++....|
T Consensus 282 ~~~li~~~~~g 292 (305)
T TIGR00635 282 QIGFLQRTPRG 292 (305)
T ss_pred HcCCcccCCch
Confidence 99999755443
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=1.6e-09 Score=118.27 Aligned_cols=275 Identities=14% Similarity=0.121 Sum_probs=144.9
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTE 208 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 208 (932)
..|+|+ ++.++.+..++. +.....+.|+|++|+||||+|+.+++... ..+ .++..+.. .....+..
T Consensus 25 ~~~vG~--~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~---~~~---~~~~~~~~-~~~~~l~~ 95 (328)
T PRK00080 25 DEFIGQ--EKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNI---RITSGPAL-EKPGDLAA 95 (328)
T ss_pred HHhcCc--HHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC---CCe---EEEecccc-cChHHHHH
Confidence 789999 556666655553 23357889999999999999999999862 111 22222211 11111222
Q ss_pred HHHHHhcccc---ccchH-HHHHHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCcccccccc-
Q 036714 209 IATALKQSLL---ENEDK-VRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGICRSMG- 283 (932)
Q Consensus 209 i~~~l~~~~~---~~~~~-~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~- 283 (932)
++..+....- ++-+. .....+.+.....+.+..+|+|+..+...+.. .++ +.+-|..||+...+.....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHH
Confidence 2222221100 00000 00011112222233445555555443322211 111 2445666777554443221
Q ss_pred --ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHhccc
Q 036714 284 --CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRGRV 361 (932)
Q Consensus 284 --~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~ 361 (932)
...+++++++.++..+++.+.++.... ....+.+..|++.|+|.|-.+..+...+. .|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCC
Confidence 112899999999999999988765433 22346789999999999976555544321 111100 0000
Q ss_pred ccCCCCchhHHhHhHhhhccCCchhhHHHHH-HhhcCCCCcccChHHHHHHHHHhCCcccchhhhhHHhHHHHHHH-HHH
Q 036714 362 RSLNGVDTEVFGRLEFSYHRLKHEKVQQCFL-YCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILN-RLV 439 (932)
Q Consensus 362 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~l~-~L~ 439 (932)
.. ...-......+...+..|+ +..+..+. ....|+.+ .+..+.+.... ....+.+++.++ .|+
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~-~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------------g~~~~~~~~~~e~~Li 302 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLD-EMDRKYLRTIIEKFGGG-PVGLDTLAAAL------------GEERDTIEDVYEPYLI 302 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCC-HHHHHHHHHHHHHcCCC-ceeHHHHHHHH------------CCCcchHHHHhhHHHH
Confidence 00 0001233344566677887 55566664 66677765 45555543222 223345666677 899
Q ss_pred HcccccccCCC
Q 036714 440 NCCLLESAKDG 450 (932)
Q Consensus 440 ~~~ll~~~~~~ 450 (932)
+.+|++....|
T Consensus 303 ~~~li~~~~~g 313 (328)
T PRK00080 303 QQGFIQRTPRG 313 (328)
T ss_pred HcCCcccCCch
Confidence 99999865443
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=3.3e-10 Score=118.03 Aligned_cols=193 Identities=23% Similarity=0.321 Sum_probs=102.0
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHH---------
Q 036714 136 LAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQ--------- 206 (932)
Q Consensus 136 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~--------- 206 (932)
|+|| ++++++|.+++..+..+.+.|+|+.|+|||+|++++.+.... ..+ .++|+...+......+.
T Consensus 1 F~gR--~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~--~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGR--EKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKE--KGY-KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S---HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhh--cCC-cEEEEecccchhhhHHHHHHHHHHHH
Confidence 6899 889999999998777899999999999999999999997621 112 34444443333222111
Q ss_pred HHHHHHHhcccc----------ccchHHHHHHHHHHHHhc-CCeEEEEEecccccc-c----------cccccCCCCCCC
Q 036714 207 TEIATALKQSLL----------ENEDKVRRAGELLGMLKA-KEKFVLILDDMWEAF-R----------LEEVGIPEPSEE 264 (932)
Q Consensus 207 ~~i~~~l~~~~~----------~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~----------~~~l~~~~~~~~ 264 (932)
..+.+.+..... ...........+.+.+.+ +++++||+||+.... . +..+........
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 111222221111 011222334444444433 346999999997654 1 111111222123
Q ss_pred CCcEEEEEeCCcccccc--------cccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 265 NGCKLVVTTRSVGICRS--------MGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 265 ~gs~iivTTR~~~v~~~--------~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
+.+ +|+++....+... .+... +.+++|+.+++++++...+... ... +...+..++|...+||+|..|.
T Consensus 156 ~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 156 NVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHH
T ss_pred Cce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 334 4444443322221 12222 8999999999999999976544 212 2345667999999999999876
Q ss_pred H
Q 036714 336 T 336 (932)
Q Consensus 336 ~ 336 (932)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=7.3e-11 Score=129.44 Aligned_cols=155 Identities=25% Similarity=0.217 Sum_probs=76.4
Q ss_pred CCCCCceEEEeecCCCcc-----CCChhhhccCCceeEEEccCCCCcc-------cCccccccccccccccccccccCCC
Q 036714 513 PHCDILSTLLLQANGNLW-----TIPECFFVYMHGLKVLNLSRTNIKV-------LPSSVSDLMNLRSLLLRWCENLERV 580 (932)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~L~~~~~~~-------lp~~i~~l~~L~~L~L~~~~~l~~l 580 (932)
..+++|+.|.++++ .+. .++.. +...+.|+.|+++++.+.. ++..+..+++|+.|++++|......
T Consensus 20 ~~l~~L~~l~l~~~-~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 20 PKLLCLQVLRLEGN-TLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHhhccEEeecCC-CCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 34455666666666 321 12222 2445556666666665442 2233445566666666665543333
Q ss_pred C-Chhcccc---CcEeecccCCCcc-----cccccccC-CCCCEEeCCCCCCcc-----cCCCccCCCCCcceEEeecCC
Q 036714 581 P-SLAKLLA---LQYLDLEETGIEE-----VPEGMEML-ENLSHLYLSSPRLKK-----FPTGILPRLRNLYKLKLSFGN 645 (932)
Q Consensus 581 p-~~~~l~~---L~~L~l~~~~i~~-----lp~~~~~l-~~L~~L~l~~~~l~~-----~p~~~l~~l~~L~~L~l~~~~ 645 (932)
+ .+..+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.++. ++. .+..+++|++|+++.+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n- 175 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANN- 175 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCC-
Confidence 3 3444444 6666666665541 22334444 666666666666541 111 1345556666666632
Q ss_pred chhhhcH----HHHHHHHhccceeEEEecCh
Q 036714 646 EALRETV----EEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 646 ~~~~~~~----~~l~~l~~~L~~L~l~~~~~ 672 (932)
.+..... ..+..+ ++|+.|+++.|.+
T Consensus 176 ~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i 205 (319)
T cd00116 176 GIGDAGIRALAEGLKAN-CNLEVLDLNNNGL 205 (319)
T ss_pred CCchHHHHHHHHHHHhC-CCCCEEeccCCcc
Confidence 2222221 122222 3566666655543
No 33
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=2.4e-09 Score=104.89 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=89.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCC---CcEEEEEEECCccCHH---HHHHHHHHHHhccccccchHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLYLI---KLQTEIATALKQSLLENEDKVRRAGELL 231 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 231 (932)
+++.|+|.+|+||||+++.++......... +..++|...++..... .+...|..+...... .... ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 579999999999999999999988543211 4567777766544332 344444444332211 1111 122
Q ss_pred HHHhcCCeEEEEEeccccccc---------ccccc-CCCCC-CCCCcEEEEEeCCccc---ccccccee-EeccCCCHHH
Q 036714 232 GMLKAKEKFVLILDDMWEAFR---------LEEVG-IPEPS-EENGCKLVVTTRSVGI---CRSMGCKE-VRVQPLSNEE 296 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~~~~~---------~~~l~-~~~~~-~~~gs~iivTTR~~~v---~~~~~~~~-~~l~~L~~~~ 296 (932)
......+++++|+|++++... +.++. ..+.. ..++++||||+|.... .+...... +++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 223367899999999976322 11111 11111 2468999999998766 23333333 9999999999
Q ss_pred HHHHHHHhhC
Q 036714 297 ALNLFLDKVG 306 (932)
Q Consensus 297 ~~~lf~~~~~ 306 (932)
..+++.+.+.
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.95 E-value=2.8e-11 Score=125.86 Aligned_cols=298 Identities=21% Similarity=0.195 Sum_probs=169.8
Q ss_pred ceeEEEccCCCC---cccCccccccccccccccccccccCCCC--C-hhccccCcEeecccC-CCccc--ccccccCCCC
Q 036714 542 GLKVLNLSRTNI---KVLPSSVSDLMNLRSLLLRWCENLERVP--S-LAKLLALQYLDLEET-GIEEV--PEGMEMLENL 612 (932)
Q Consensus 542 ~L~~L~L~~~~~---~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~-~~~l~~L~~L~l~~~-~i~~l--p~~~~~l~~L 612 (932)
.|+.|.+.++.- ..+-....++++++.|++.+|.++++-. + -..+++|++|++..| .++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 467777777652 2333334567888888888888776544 3 345677777777776 55532 1122456677
Q ss_pred CEEeCCCCC-CcccC-CCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceE
Q 036714 613 SHLYLSSPR-LKKFP-TGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNY 690 (932)
Q Consensus 613 ~~L~l~~~~-l~~~p-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~ 690 (932)
.+|+++.|. ++.-. .....+++.|+.+.+.+|.......+..+...+..+..++
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln------------------------ 274 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN------------------------ 274 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc------------------------
Confidence 777776665 32200 0012344445555444333333222222221111122222
Q ss_pred EEEecccccCCceeecccceeEEEEeecccccccC---cccCCcccceeeEeccCCcccc-----ccccCCccEEEEecC
Q 036714 691 CLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREE---TIVLPEDVQFLQMFEVSDVASL-----NDFSHDLKVLRFDSC 762 (932)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~l-----~~~~~~L~~L~L~~c 762 (932)
+..|....+.+ .-..+..|+.|..++|....+. ....++|+.|.+..|
T Consensus 275 ------------------------l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 275 ------------------------LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC 330 (483)
T ss_pred ------------------------hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc
Confidence 11111111111 1123456788888888865533 345589999999999
Q ss_pred CCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccC---CCC
Q 036714 763 KNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCS---NNG 839 (932)
Q Consensus 763 ~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~---~~~ 839 (932)
..+++..-...-.+.+.|+.+++..|..+.+-.... . ...+|.|++|.++.|...++... ..+
T Consensus 331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s--------l------s~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS--------L------SRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred chhhhhhhhhhhcCChhhhhhcccccceehhhhHhh--------h------ccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 988875333334477899999999987655441110 0 23789999999999987776511 113
Q ss_pred cccCCCccEEEecccCCCccccCCCcccCCCCCCCCCCcceE---ecchhhhhhcccCCccccccccCceeeeeeee
Q 036714 840 VLVCNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVI---KMEKELWESLEWDQPNAKDVLNPYCKFVALWN 913 (932)
Q Consensus 840 ~~~~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l---~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~ 913 (932)
......|+.+++.+||.++.- .+.+++ .|++|+.| ++..-.-+.+ .....+.|.+++.+|+-
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~--~Le~l~-----~c~~Leri~l~~~q~vtk~~i-----~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDA--TLEHLS-----ICRNLERIELIDCQDVTKEAI-----SRFATHLPNIKVHAYFA 461 (483)
T ss_pred cccccccceeeecCCCCchHH--HHHHHh-----hCcccceeeeechhhhhhhhh-----HHHHhhCccceehhhcc
Confidence 445668999999999998765 344443 47888886 3332222211 12345788888887653
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.85 E-value=6.7e-08 Score=116.99 Aligned_cols=311 Identities=15% Similarity=0.189 Sum_probs=180.1
Q ss_pred cccccchHHHHHHHHHHhc---CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC---HHHHHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY---LIKLQTE 208 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~---~~~~~~~ 208 (932)
.++|| +.+.+.|...+. .+.-.|+.+.|..|+|||+|+++|.+...+....|-...+-....+.. .....++
T Consensus 1 ~l~GR--e~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGR--ETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCch--HhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 36899 557777766654 456789999999999999999999998743322222111211222221 2233334
Q ss_pred HHHHHhccc-------------------c-------------c---------cchHHHH----HH-HHHHHHhcCCeEEE
Q 036714 209 IATALKQSL-------------------L-------------E---------NEDKVRR----AG-ELLGMLKAKEKFVL 242 (932)
Q Consensus 209 i~~~l~~~~-------------------~-------------~---------~~~~~~~----~~-~l~~~l~~~kr~Ll 242 (932)
+..++.... . . ......+ .. .+.....+.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 443331110 0 0 0000011 11 12222225569999
Q ss_pred EEeccc-c-cccc---ccccCCCCC-CCCCcEEEE--EeCCc--ccccccccee-EeccCCCHHHHHHHHHHhhCCCCCC
Q 036714 243 ILDDMW-E-AFRL---EEVGIPEPS-EENGCKLVV--TTRSV--GICRSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQ 311 (932)
Q Consensus 243 VlDdv~-~-~~~~---~~l~~~~~~-~~~gs~iiv--TTR~~--~v~~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~ 311 (932)
|+||+. - ...+ +.+.....- .-....|.. |.+.. .+........ +.|.||+..+...+....++...
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 999994 2 2222 222111110 000112332 22222 1122222223 99999999999999999887642
Q ss_pred CChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCC------CchHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCCch
Q 036714 312 IPTLDKKIINLVVEECAGLPLAIVTVAGCMRGV------DEIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHE 385 (932)
Q Consensus 312 ~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 385 (932)
....+....|.++..|+|+.+..+-..+..+ .+...|..-..++... ...+.+...+..-.+.|| .
T Consensus 237 --~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~-----~~~~~vv~~l~~rl~kL~-~ 308 (849)
T COG3899 237 --LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL-----ATTDAVVEFLAARLQKLP-G 308 (849)
T ss_pred --cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc-----hhhHHHHHHHHHHHhcCC-H
Confidence 2345778999999999999999999888763 3444555443332211 112335667889999999 7
Q ss_pred hhHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccchhhhhHHhHHHHHHHHHHHccccccc-----CC-C--C-EEEeC
Q 036714 386 KVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA-----KD-G--R-CVKMH 456 (932)
Q Consensus 386 ~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~~-~--~-~~~mH 456 (932)
..|+.+...|++... |+...|...+-. .....+...++.|....++-.. .. . . |-..|
T Consensus 309 ~t~~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 899999999999755 555666555421 2334566667777666666421 11 1 1 33679
Q ss_pred chhHHHHHHhhccC
Q 036714 457 DLIRDMALSITSES 470 (932)
Q Consensus 457 dlv~d~a~~~~~~~ 470 (932)
|.|++.|.+...+.
T Consensus 376 ~~vqqaaY~~i~~~ 389 (849)
T COG3899 376 DRVQQAAYNLIPES 389 (849)
T ss_pred HHHHHHHhccCchh
Confidence 99999998766554
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.85 E-value=6.1e-10 Score=122.12 Aligned_cols=137 Identities=22% Similarity=0.154 Sum_probs=90.5
Q ss_pred hhhccCCceeEEEccCCCCc-----ccCccccccccccccccccccccC------CCC-ChhccccCcEeecccCCCc-c
Q 036714 535 CFFVYMHGLKVLNLSRTNIK-----VLPSSVSDLMNLRSLLLRWCENLE------RVP-SLAKLLALQYLDLEETGIE-E 601 (932)
Q Consensus 535 ~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~l~------~lp-~~~~l~~L~~L~l~~~~i~-~ 601 (932)
.++..+.+|++|+++++.++ .++..+...++|++|+++++..-. .++ .+..+++|+.|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 44577888999999999974 356667778889999998865331 122 3667789999999998776 3
Q ss_pred cccccccCCC---CCEEeCCCCCCcccCC----CccCCC-CCcceEEeecCCchhhh----cHHHHHHHHhccceeEEEe
Q 036714 602 VPEGMEMLEN---LSHLYLSSPRLKKFPT----GILPRL-RNLYKLKLSFGNEALRE----TVEEAARLSDRLDTFEGIF 669 (932)
Q Consensus 602 lp~~~~~l~~---L~~L~l~~~~l~~~p~----~~l~~l-~~L~~L~l~~~~~~~~~----~~~~l~~l~~~L~~L~l~~ 669 (932)
.+..+..+.+ |++|++++|.+...+. ..+..+ ++|++|+++.+. +... ....+..+ .+|+.|+++.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~-~~L~~L~l~~ 174 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRAN-RDLKELNLAN 174 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhC-CCcCEEECcC
Confidence 4444444444 9999999887652111 113555 788888888543 3322 12334444 5788888876
Q ss_pred cChh
Q 036714 670 STLN 673 (932)
Q Consensus 670 ~~~~ 673 (932)
|.+.
T Consensus 175 n~l~ 178 (319)
T cd00116 175 NGIG 178 (319)
T ss_pred CCCc
Confidence 6544
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=9.8e-11 Score=126.21 Aligned_cols=155 Identities=28% Similarity=0.411 Sum_probs=119.1
Q ss_pred cccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccc
Q 036714 481 LQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSV 560 (932)
Q Consensus 481 l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i 560 (932)
..++|........+..+.+..|.+..+|... .++..|..|+++.| .+..+|..+ ..+ -|++|-+++|.++.+|..+
T Consensus 87 ~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~N-qlS~lp~~l-C~l-pLkvli~sNNkl~~lp~~i 162 (722)
T KOG0532|consen 87 FSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSN-QLSHLPDGL-CDL-PLKVLIVSNNKLTSLPEEI 162 (722)
T ss_pred cccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccc-hhhcCChhh-hcC-cceeEEEecCccccCCccc
Confidence 3455554333344566677777777776543 46777888888888 777788766 344 3888888888888888888
Q ss_pred cccccccccccccccccCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceE
Q 036714 561 SDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKL 639 (932)
Q Consensus 561 ~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L 639 (932)
+.+.+|..|+.+.|. +..+| .++.+.+|+.|+++.|++..+|+++..|+ |..||++.|++..+|.. |.+|+.||+|
T Consensus 163 g~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~-fr~m~~Lq~l 239 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVD-FRKMRHLQVL 239 (722)
T ss_pred ccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchh-hhhhhhheee
Confidence 888888888888765 45566 78888889999888888888888888664 88889888888888887 6888999998
Q ss_pred Eee
Q 036714 640 KLS 642 (932)
Q Consensus 640 ~l~ 642 (932)
.|.
T Consensus 240 ~Le 242 (722)
T KOG0532|consen 240 QLE 242 (722)
T ss_pred eec
Confidence 888
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=7.5e-10 Score=119.53 Aligned_cols=130 Identities=28% Similarity=0.415 Sum_probs=63.0
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLL 571 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L 571 (932)
..+..++++.|+++.+|...+ .| -|++|.+++| ++..+|+.+ +.+..|..||.+.|.+..+|..++.+..|+.|++
T Consensus 121 ~~lt~l~ls~NqlS~lp~~lC-~l-pLkvli~sNN-kl~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLPDGLC-DL-PLKVLIVSNN-KLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hHHHHhhhccchhhcCChhhh-cC-cceeEEEecC-ccccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 334444555555554444332 11 2455555554 455555544 3445555555555555555555555555555555
Q ss_pred ccccccCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCC
Q 036714 572 RWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPT 627 (932)
Q Consensus 572 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~ 627 (932)
+.|. +..+| .+. .-.|..||++.|+|..+|..+.+|+.|++|-|.+|.++.-|.
T Consensus 197 rRn~-l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 197 RRNH-LEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hhhh-hhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 5432 33333 344 233455555555555555555555555555555555544443
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.2e-10 Score=109.85 Aligned_cols=180 Identities=21% Similarity=0.230 Sum_probs=102.1
Q ss_pred CcEeecccCCCc--ccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeE
Q 036714 589 LQYLDLEETGIE--EVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFE 666 (932)
Q Consensus 589 L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~ 666 (932)
||+|||+...|+ .+...+..+.+|+.|.+.++.+.+--...+.+-.+|+.|+++.|+.++...+.-+-.-|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 555555555444 333344556666666666666543222224555667777777666666655544433347777777
Q ss_pred EEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCC---
Q 036714 667 GIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSD--- 743 (932)
Q Consensus 667 l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~--- 743 (932)
++||.+..-...+. .....++|..|.|+||..
T Consensus 267 lsWc~l~~~~Vtv~---------------------------------------------V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVA---------------------------------------------VAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred chHhhccchhhhHH---------------------------------------------HhhhchhhhhhhhhhhHhhhh
Confidence 77765432100000 001223455555555541
Q ss_pred ---ccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCcc
Q 036714 744 ---VASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRL 820 (932)
Q Consensus 744 ---~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L 820 (932)
+..+..-+|+|.+|+|++|..+++ .....+-.++.|++|.++.|+.+..-... .+...|+|
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~---------------~l~s~psl 365 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLL---------------ELNSKPSL 365 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHee---------------eeccCcce
Confidence 223334448899999999888876 33344557788899999988865221111 15577888
Q ss_pred ceeeccCCc
Q 036714 821 KKFYLWGLR 829 (932)
Q Consensus 821 ~~L~L~~~~ 829 (932)
.+|++.+|-
T Consensus 366 ~yLdv~g~v 374 (419)
T KOG2120|consen 366 VYLDVFGCV 374 (419)
T ss_pred EEEEecccc
Confidence 888888763
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1.4e-08 Score=97.94 Aligned_cols=103 Identities=28% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-Ch-hccccCcEee
Q 036714 516 DILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SL-AKLLALQYLD 593 (932)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~-~~l~~L~~L~ 593 (932)
.+++.|++.+| .+..+.. .-..+.+|+.|+|++|.|+.++ .+..+++|++|++++|. ++.++ .+ ..+++|+.|+
T Consensus 19 ~~~~~L~L~~n-~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGN-QISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccc-ccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEE
Confidence 34455555555 4433321 1013444555555555555443 24444455555554422 33333 22 2344455555
Q ss_pred cccCCCcccc--cccccCCCCCEEeCCCCCC
Q 036714 594 LEETGIEEVP--EGMEMLENLSHLYLSSPRL 622 (932)
Q Consensus 594 l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l 622 (932)
+++|.|..+. ..+..+++|+.|++.+|++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 5544443321 1233444444444444443
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1.1e-08 Score=98.58 Aligned_cols=121 Identities=26% Similarity=0.297 Sum_probs=54.1
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccc-ccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSV-SDLMNLRSLLL 571 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~L 571 (932)
..+.|++.+|.++.+.. ....+.+|++|++++| .+..++. +..++.|+.|++++|.|++++..+ ..+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 46889999999988743 3346789999999999 8888874 578999999999999999987655 46899999999
Q ss_pred ccccccCCCC---ChhccccCcEeecccCCCccccc----ccccCCCCCEEeCC
Q 036714 572 RWCENLERVP---SLAKLLALQYLDLEETGIEEVPE----GMEMLENLSHLYLS 618 (932)
Q Consensus 572 ~~~~~l~~lp---~~~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~ 618 (932)
++|. +..+. .+..+++|++|++.+|.++.-+. .+..+|+|+.||-.
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9865 44444 57889999999999998886543 35678888888753
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.65 E-value=2e-07 Score=95.79 Aligned_cols=174 Identities=13% Similarity=0.227 Sum_probs=100.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
..|+|-+.......+.....+...+.+.|+|++|+|||+||+++++..... ...+.|+...... ..
T Consensus 16 d~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~~---~~-------- 81 (229)
T PRK06893 16 DNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKSQ---YF-------- 81 (229)
T ss_pred cccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHhh---hh--------
Confidence 566654322222333333333335678999999999999999999987322 2345666543110 00
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc---ccccc-ccCCCCC-CCCCcEEEE-EeCC---------ccc
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA---FRLEE-VGIPEPS-EENGCKLVV-TTRS---------VGI 278 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iiv-TTR~---------~~v 278 (932)
.......+ .+.-+|||||+|.. ..|+. +...+.. ...|..+|| |++. +++
T Consensus 82 -------------~~~~~~~~--~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L 146 (229)
T PRK06893 82 -------------SPAVLENL--EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDL 146 (229)
T ss_pred -------------hHHHHhhc--ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhH
Confidence 00111222 12358999999863 23332 2111111 123555555 4443 344
Q ss_pred ccccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHh
Q 036714 279 CRSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAG 339 (932)
Q Consensus 279 ~~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 339 (932)
...+.... +++++++.++.++++++.+..... .-.+++..-|++++.|..-.+..+-.
T Consensus 147 ~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 147 ASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 55555444 899999999999999987754322 22356778899999887766554433
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=5.3e-06 Score=95.88 Aligned_cols=204 Identities=15% Similarity=0.106 Sum_probs=118.1
Q ss_pred ccccccchHHHHHHHHHHhc----CCC-eeEEEEEeCCCChHHHHHHHHHHHHhhcc--CCCc--EEEEEEECCccCHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----GDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET--NKFN--VVIWVTVSQPLYLIK 204 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~--~~~wv~~s~~~~~~~ 204 (932)
..++|| ++++++|...|. +.. ..++.|+|++|+|||+.++.|.+...... .... .+++|.+....+...
T Consensus 755 D~LPhR--EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 755 KYLPCR--EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CcCCCh--HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 568899 677777766654 233 36788999999999999999998774322 1111 356777766677788
Q ss_pred HHHHHHHHHhccccc-cchHHHHHHHHHHHHhc--CCeEEEEEecccccc-----ccccccCCCCCCCCCcEEEE--EeC
Q 036714 205 LQTEIATALKQSLLE-NEDKVRRAGELLGMLKA--KEKFVLILDDMWEAF-----RLEEVGIPEPSEENGCKLVV--TTR 274 (932)
Q Consensus 205 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iiv--TTR 274 (932)
+...|.++|...... .........+++..+.. +...+||||+|+... .+-.+... + ...+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecC
Confidence 888888888433221 11223344455544422 234699999997532 12111111 1 123445444 443
Q ss_pred Ccc--------ccccccceeEeccCCCHHHHHHHHHHhhCCCCCCCChh-hHHHHHHHHHHcCCCcHHHHHHHhhh
Q 036714 275 SVG--------ICRSMGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTL-DKKIINLVVEECAGLPLAIVTVAGCM 341 (932)
Q Consensus 275 ~~~--------v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~-~~~~~~~i~~~~~G~Plai~~~~~~L 341 (932)
..+ +...++...+...+.+.++-.+++..++........++ ++-+|+.++..-|-.-.||.++-.+.
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 322 22233333367799999999999998875432212333 33344444444444556666655444
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.64 E-value=5.5e-07 Score=101.39 Aligned_cols=176 Identities=15% Similarity=0.239 Sum_probs=102.9
Q ss_pred ccccccchHHHHHH---HHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEE---IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 134 ~~~vGr~~~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 210 (932)
.++||+ +..+.. +..++..+..+.+.++|++|+||||+|+.+++... ..| +.++......+-.+.+.
T Consensus 12 ~d~vGq--~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~---~~~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 12 DEVVGQ--EHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD---APF-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred HHhcCc--HHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC---CCE-----EEEecccccHHHHHHHH
Confidence 678898 444444 77777777778899999999999999999998752 222 22222211111111221
Q ss_pred HHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE--eCCcc--ccccc--
Q 036714 211 TALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT--TRSVG--ICRSM-- 282 (932)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT--TR~~~--v~~~~-- 282 (932)
+.. ......+++.+|++|+++.. .+.+.+...+. .|..++|. |.+.. +....
T Consensus 82 ~~~-----------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 82 EEA-----------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHH-----------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 111 11112457889999999863 23333333332 24445543 33321 11111
Q ss_pred cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHh
Q 036714 283 GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAG 339 (932)
Q Consensus 283 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 339 (932)
....+.+.+++.++.+.++.+.+............+..+.|++.++|.+..+..+..
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 112389999999999999998664311101123356778899999999977655443
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=6.1e-09 Score=103.66 Aligned_cols=130 Identities=26% Similarity=0.295 Sum_probs=96.1
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLR 572 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 572 (932)
.+..+++++|.++.+..+. .-.|.+|.|+++.| .+..+.. +..+++|..||||+|.+.++-..-..+-|.++|.|+
T Consensus 285 ~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESV-KLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhhhhhhh-hhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4677888888887765433 34678888888888 6655554 467888888888888877665544567778888888
Q ss_pred cccccCCCCChhccccCcEeecccCCCcccc--cccccCCCCCEEeCCCCCCcccCC
Q 036714 573 WCENLERVPSLAKLLALQYLDLEETGIEEVP--EGMEMLENLSHLYLSSPRLKKFPT 627 (932)
Q Consensus 573 ~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~ 627 (932)
+ +.++++..+++|.+|.+||+++|+|..+. .+|++|+.|++|.+.+|.+..++.
T Consensus 361 ~-N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 Q-NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h-hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 7 45677777888888888888888877663 467888888888888887766554
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.58 E-value=1.9e-06 Score=90.73 Aligned_cols=222 Identities=15% Similarity=0.171 Sum_probs=123.9
Q ss_pred ccccccch-HHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
.++||.+. -.+-.-|...+..+.+.-.-+||++|+||||||+.++.... .. |..++...+-.+-++++++.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~---~~-----f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN---AA-----FEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC---Cc-----eEEeccccccHHHHHHHHHH
Confidence 67788633 01123445566677788889999999999999999998752 22 33444433322222222221
Q ss_pred HhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEE--EeCCcccc--c--cccc
Q 036714 213 LKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVV--TTRSVGIC--R--SMGC 284 (932)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TTR~~~v~--~--~~~~ 284 (932)
..+....+++.+|++|.|..- .+-+.+... -..|.-|+| ||-++... . ...+
T Consensus 96 -----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 96 -----------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred -----------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 112233588999999999853 333333332 256777776 55554331 1 1122
Q ss_pred eeEeccCCCHHHHHHHHHHhhCCCCCCCC---h-hhHHHHHHHHHHcCCCcHHHHHHHhh----hcCCC--chHHHHHHH
Q 036714 285 KEVRVQPLSNEEALNLFLDKVGSSTLQIP---T-LDKKIINLVVEECAGLPLAIVTVAGC----MRGVD--EIHEWRNAL 354 (932)
Q Consensus 285 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~---~-~~~~~~~~i~~~~~G~Plai~~~~~~----L~~~~--~~~~w~~~l 354 (932)
..+.+++|+.++-.+++.+.+-....... . -.+++...++..++|.-.++-..... -+... ..+..+..+
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l 235 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEIL 235 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHH
Confidence 22899999999999999995532211111 1 23457778999999977654333322 22221 133334433
Q ss_pred HHHhcccccCCCCchhHHhHhHhhhccCC
Q 036714 355 NELRGRVRSLNGVDTEVFGRLEFSYHRLK 383 (932)
Q Consensus 355 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 383 (932)
++-.......++..-++..++.-|...-.
T Consensus 236 ~~~~~~~Dk~gD~hYdliSA~hKSvRGSD 264 (436)
T COG2256 236 QRRSARFDKDGDAHYDLISALHKSVRGSD 264 (436)
T ss_pred hhhhhccCCCcchHHHHHHHHHHhhccCC
Confidence 33211111112223456667777766554
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.3e-08 Score=106.86 Aligned_cols=84 Identities=24% Similarity=0.221 Sum_probs=38.8
Q ss_pred cccCcEeecccCCCc--ccccccccCCCCCEEeCCCCC---CcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHh
Q 036714 586 LLALQYLDLEETGIE--EVPEGMEMLENLSHLYLSSPR---LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSD 660 (932)
Q Consensus 586 l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~---l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 660 (932)
+++|+.|.+++|+++ .+-..+..+++|..|++.+|. +...+. .-+..|++|+|+.++..........+.+ +
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~l-~ 271 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGTL-P 271 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh---hhhhHHhhccccCCcccccccccccccc-c
Confidence 445555556666554 222223345566666666553 112221 2244555555553333333323344445 5
Q ss_pred ccceeEEEecChh
Q 036714 661 RLDTFEGIFSTLN 673 (932)
Q Consensus 661 ~L~~L~l~~~~~~ 673 (932)
.|+.|+++.+++.
T Consensus 272 ~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 272 GLNQLNLSSTGIA 284 (505)
T ss_pred chhhhhccccCcc
Confidence 5555555555443
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=5.4e-09 Score=109.21 Aligned_cols=118 Identities=17% Similarity=0.244 Sum_probs=69.6
Q ss_pred ccceeeEeccCCcc-----ccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhh
Q 036714 732 DVQFLQMFEVSDVA-----SLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKEL 806 (932)
Q Consensus 732 ~L~~L~l~~~~~~~-----~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 806 (932)
+|+.|.+.+|..+. .+....+.|+.+++..|....+..-.....+++.|+.|.+++|..+++-. ...
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g--------i~~ 392 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG--------IRH 392 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh--------hhh
Confidence 44445555544322 22233367777777777666553222234577888888888887665541 111
Q ss_pred hccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCcccc
Q 036714 807 ATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLS 861 (932)
Q Consensus 807 ~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp 861 (932)
.... ..+...|..|.+.+||.+++-... ....+++|+.+++.+|...++-|
T Consensus 393 l~~~---~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 393 LSSS---SCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hhhc---cccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhh
Confidence 1111 235677888888888877664331 33447788888888887776654
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=4.9e-06 Score=95.80 Aligned_cols=181 Identities=15% Similarity=0.201 Sum_probs=110.2
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 194 (932)
.+++|. +..++.|.+++..++ .+.+.++|..|+||||+|+.+.+...-.. +.|..++++
T Consensus 16 dEVIGQ--e~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 16 ASLVGQ--EHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHcCc--HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 679998 678888888888776 45668999999999999999998763110 011123333
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivT 272 (932)
+.+....+.++ +++++.. ...-..++.-++|||+++... .+..+...+.......++|+|
T Consensus 94 DAas~rgVDdI-ReLIe~a-----------------~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa 155 (830)
T PRK07003 94 DAASNRGVDEM-AALLERA-----------------VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155 (830)
T ss_pred cccccccHHHH-HHHHHHH-----------------HhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 33222222221 1111111 000113455688999998643 244444334333446777777
Q ss_pred eCCc-cccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH-HHHHH
Q 036714 273 TRSV-GICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL-AIVTV 337 (932)
Q Consensus 273 TR~~-~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 337 (932)
|++. .+..-. .+..+++..++.++..+.+.+.+..+.. ....+....|++.++|... ++..+
T Consensus 156 Ttd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred ECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7763 332211 2233999999999999999988765432 2235677889999998664 55543
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.6e-08 Score=104.78 Aligned_cols=179 Identities=20% Similarity=0.147 Sum_probs=112.1
Q ss_pred cccceeecccccccccCC--CcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCc--ccCcccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPS--YMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIK--VLPSSVSDLMNLR 567 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~ 567 (932)
.+++.++++.|=+....+ .+...+|+|+.|+++.|....-.....-..+++|+.|.|+.|+++ ++-...-.+++|.
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 457778887774443211 223467888888888883322222222245778888888888876 3333445678888
Q ss_pred ccccccccccCCCC-ChhccccCcEeecccCCCcccc--cccccCCCCCEEeCCCCCCccc--CCC-c---cCCCCCcce
Q 036714 568 SLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVP--EGMEMLENLSHLYLSSPRLKKF--PTG-I---LPRLRNLYK 638 (932)
Q Consensus 568 ~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~--p~~-~---l~~l~~L~~ 638 (932)
.|.|.+|..+..-. +...++.|+.|||++|++..++ ..++.++.|+.|+++.|.+.++ |+. . ....++|+.
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 88888875433333 4666788888888888777666 4567888888888888876543 221 1 245667777
Q ss_pred EEeecCCchhhhcHHHHHHHHhccceeEEEecC
Q 036714 639 LKLSFGNEALRETVEEAARLSDRLDTFEGIFST 671 (932)
Q Consensus 639 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~ 671 (932)
|++..++-..-..+..+..+ .+|+.|.+..+.
T Consensus 306 L~i~~N~I~~w~sl~~l~~l-~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTL-ENLKHLRITLNY 337 (505)
T ss_pred eecccCccccccccchhhcc-chhhhhhccccc
Confidence 77773322223344555555 666666655443
No 51
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.46 E-value=7.5e-07 Score=92.08 Aligned_cols=174 Identities=14% Similarity=0.219 Sum_probs=102.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
..|++...+..++.+..++.......|.|+|++|+|||+||+.+++.... .....++++++.-.. ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~------~~---- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQ------AD---- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHH------hH----
Confidence 45553223556777777766666788999999999999999999998632 233455665432211 00
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc---cc-ccccCCCCC-CCCCcEEEEEeCCcc---------cc
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF---RL-EEVGIPEPS-EENGCKLVVTTRSVG---------IC 279 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTTR~~~---------v~ 279 (932)
......+ . +.-+||+||++... .| +.+...+.. ...+..+|+||+... +.
T Consensus 82 --------------~~~~~~~-~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 82 --------------PEVLEGL-E-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred --------------HHHHhhc-c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHH
Confidence 0111111 2 22489999997532 22 222221111 123347888887532 11
Q ss_pred cccc-ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHh
Q 036714 280 RSMG-CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAG 339 (932)
Q Consensus 280 ~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 339 (932)
..+. ...+++.+++.++...++...+..... +-..+..+.|++.+.|.|..+..+..
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 1222 223899999999999998875432211 22345667788888998877665543
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=1.4e-08 Score=101.14 Aligned_cols=122 Identities=27% Similarity=0.294 Sum_probs=64.8
Q ss_pred CCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-ChhccccCcEeec
Q 036714 516 DILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDL 594 (932)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l 594 (932)
..|+++++++| .+..+.++. .-.+.+|+|++|.|.+..+-+ +..+++|+.|+|++|. +..+. --.+|-|.++|.+
T Consensus 284 q~LtelDLS~N-~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhcccccc-chhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 34556666666 555555544 445566666666666554433 5555666666666533 33332 2334555566666
Q ss_pred ccCCCcccccccccCCCCCEEeCCCCCCcccCC-CccCCCCCcceEEee
Q 036714 595 EETGIEEVPEGMEMLENLSHLYLSSPRLKKFPT-GILPRLRNLYKLKLS 642 (932)
Q Consensus 595 ~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~-~~l~~l~~L~~L~l~ 642 (932)
++|.|..+ .++++|-+|..|++++|++..+.. ..+++++.|+++.+.
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 66655555 345555566666666665544321 113555555555554
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.40 E-value=3.6e-06 Score=92.97 Aligned_cols=196 Identities=14% Similarity=0.181 Sum_probs=107.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCc-EEEEEEECCccCH--HHHHH--H
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLYL--IKLQT--E 208 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~--~~~~~--~ 208 (932)
..++|+ +..++.+..++..+..+.+.++|++|+||||+|+.+++.... ..+. ..+.+++++.... ..+.. .
T Consensus 15 ~~~~g~--~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQ--DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG--DPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HHhcCC--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC--cccccceEEechhhhhhcchhhhhcCcc
Confidence 678898 668888888888777677889999999999999999987631 2221 2344444321100 00000 0
Q ss_pred HHHHHhccccccchHHHHHHHHHHHHh-----cCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEEeCCc-cccc
Q 036714 209 IATALKQSLLENEDKVRRAGELLGMLK-----AKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVTTRSV-GICR 280 (932)
Q Consensus 209 i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~ 280 (932)
....++...............+.+... .+.+-+||+||+.... ....+...+......+++|+||... .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 000000000000001122222222221 1334589999996532 1222222222223456777777542 2222
Q ss_pred ccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 281 SMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 281 ~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
... ...+++.+++.++...++.+.+...... -..+.++.+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 211 1228899999999999988876443321 2356788899999987766544
No 54
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=7.7e-07 Score=82.50 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=74.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAK 237 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 237 (932)
+++.|.|+.|+||||++++++++.. ....+++++..+........ .+ ....+.+. ...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~--------------~~---~~~~~~~~-~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLAD--------------PD---LLEYFLEL-IKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhh--------------hh---hHHHHHHh-hcc
Confidence 6899999999999999999998862 33456676655432211000 00 11111121 233
Q ss_pred CeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCccccc-----ccc-cee-EeccCCCHHHH
Q 036714 238 EKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGICR-----SMG-CKE-VRVQPLSNEEA 297 (932)
Q Consensus 238 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~-----~~~-~~~-~~l~~L~~~~~ 297 (932)
++.+|+||++....+|......+-+..+..+|++|+.+..... ... ... ++|.||+..|.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 6788999999988777765555544445679999998754432 222 222 89999998773
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=1.6e-07 Score=106.07 Aligned_cols=171 Identities=31% Similarity=0.397 Sum_probs=92.2
Q ss_pred ccceeecccccccccCCCcCCCC-CCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHC-DILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLL 571 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L 571 (932)
.+..+.+.+|.+..+++... .. ++|+.|++++| .+..+|..+ ..++.|+.|++++|.+..+|...+.+.+|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N-~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDN-KIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCccccc-cchhhccccccccc-chhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 35555666666665554321 22 25666666666 555554222 5566666666666666666655556666666666
Q ss_pred ccccccCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 572 RWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 572 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
++| .+..+| .+..+.+|++|.+++|.+...+..+..+.++..|.+.+|.+..++.. ++.+++|+.|+++ ++.....
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s-~n~i~~i 270 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLS-NNQISSI 270 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch-hccccccceeccc-ccccccc
Confidence 653 345555 33455556666666665555555555666666666555555544333 3556666666665 2222222
Q ss_pred cHHHHHHHHhccceeEEEecCh
Q 036714 651 TVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 651 ~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
.. ++.+ .+++.|+++.+.+
T Consensus 271 ~~--~~~~-~~l~~L~~s~n~~ 289 (394)
T COG4886 271 SS--LGSL-TNLRELDLSGNSL 289 (394)
T ss_pred cc--cccc-CccCEEeccCccc
Confidence 21 4455 5666666655443
No 56
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.38 E-value=1e-06 Score=82.29 Aligned_cols=117 Identities=22% Similarity=0.235 Sum_probs=79.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc--CCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET--NKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGML 234 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 234 (932)
-+++.|+|.+|+|||++++++.+...... ..-..++|+.+....+...+...|+.+++.......+.......+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 47899999999999999999999873211 1134577999888889999999999999987655334444556666666
Q ss_pred hcCCeEEEEEeccccc-c--ccccccCCCCCCCCCcEEEEEeCC
Q 036714 235 KAKEKFVLILDDMWEA-F--RLEEVGIPEPSEENGCKLVVTTRS 275 (932)
Q Consensus 235 ~~~kr~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~iivTTR~ 275 (932)
.+.+..+||+|+++.. . .++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6666789999999764 2 2333322222 556677777765
No 57
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.37 E-value=2.8e-06 Score=81.07 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccc
Q 036714 142 KKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENE 221 (932)
Q Consensus 142 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 221 (932)
+..+..+...+.....+.+.|+|++|+|||++|+.+++... ..-..++++..++..........+...
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~--------- 71 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF--------- 71 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh---------
Confidence 56778888888776678899999999999999999999873 222346666655443322221111000
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEeccccc-----cccccccCCCCC---CCCCcEEEEEeCCcc
Q 036714 222 DKVRRAGELLGMLKAKEKFVLILDDMWEA-----FRLEEVGIPEPS---EENGCKLVVTTRSVG 277 (932)
Q Consensus 222 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~---~~~gs~iivTTR~~~ 277 (932)
............++.++|+||++.. ..+..+...... ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111112346789999999853 122222222211 135778888888653
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=5.9e-06 Score=97.12 Aligned_cols=181 Identities=13% Similarity=0.192 Sum_probs=108.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCee-EEEEEeCCCChHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVT-KIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 194 (932)
..++|. +..++.|.+++..+++. .+.++|+.|+||||+|+.+++....... .|.-++++
T Consensus 16 ddIIGQ--e~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQ--SHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCc--HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 679998 66778888888877755 4589999999999999999988732100 01112222
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
.......+..+ ++|.+.+ ...-..+++-++|||++... ...+.+...+.......++|++
T Consensus 94 dAas~~kVDdI-ReLie~v-----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 94 DAASRTKVDDT-RELLDNV-----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred ccccccCHHHH-HHHHHHH-----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 22111111111 2222111 11111466789999999763 3344444333322345566655
Q ss_pred eCC-ccccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 273 TRS-VGICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 273 TR~-~~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
|.+ ..+.... .+..|++.+|+.++....+.+.+..... ....+.+..|++.++|.|.-+..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 544 4443221 2334999999999999999887644321 223567888999999988654444
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=8.5e-06 Score=90.04 Aligned_cols=176 Identities=16% Similarity=0.227 Sum_probs=104.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 194 (932)
.+++|. +..++.+.+.+..+++ +.+.++|+.|+||||+|+.+++....... .+....++
T Consensus 16 ~~iiGq--~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 16 RDIIGQ--KHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 678998 6677888888877664 56789999999999999999987631100 01111222
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----hcCCeEEEEEecccccc--ccccccCCCCCCCCCcE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGML----KAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCK 268 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ 268 (932)
..+....+ +...++.... ..+++-++|+|+++... .++.+...+.......+
T Consensus 94 ~~~~~~~v----------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 94 DAASRTKV----------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred cccccCCH----------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11111111 1112222211 12455699999998643 34444433333344566
Q ss_pred EEEEeCCc-ccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 269 LVVTTRSV-GICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 269 iivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
+|++|.+. .+..... ...+++.+++.++..+.+...+..... .-.++.+..|++.++|.|..+..
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 77766542 3322221 223999999999999888876543321 12345678899999998865433
No 60
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.35 E-value=3.9e-07 Score=102.94 Aligned_cols=160 Identities=31% Similarity=0.387 Sum_probs=136.1
Q ss_pred ccccccCCCcccccc-ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 478 GLRLQEFPGKQEWKA-NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 478 ~~~l~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
...+..++....... +++.+++.+|.+..++.. ...+++|+.|+++.| .+..+|... ...+.|+.|++++|.+..+
T Consensus 125 ~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~-~~~~~L~~L~ls~N~i~~l 201 (394)
T COG4886 125 NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLL-SNLSNLNNLDLSGNKISDL 201 (394)
T ss_pred CcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhh-hhhhhhhheeccCCccccC
Confidence 334455666555553 899999999999988533 358899999999999 888888753 3789999999999999999
Q ss_pred CccccccccccccccccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCc
Q 036714 557 PSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNL 636 (932)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L 636 (932)
|..+..+.+|++|.+++|..+..+..+.++.++..|.+.++.+..++..++.+++|+.|++++|.+..++. ++.+.+|
T Consensus 202 ~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l 279 (394)
T COG4886 202 PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNL 279 (394)
T ss_pred chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCcc
Confidence 99887888899999998765555558999999999999999988888899999999999999999999887 6899999
Q ss_pred ceEEee
Q 036714 637 YKLKLS 642 (932)
Q Consensus 637 ~~L~l~ 642 (932)
+.|+++
T Consensus 280 ~~L~~s 285 (394)
T COG4886 280 RELDLS 285 (394)
T ss_pred CEEecc
Confidence 999998
No 61
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.1e-05 Score=87.43 Aligned_cols=175 Identities=14% Similarity=0.202 Sum_probs=110.0
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhh---ccCCCcEEEEEE-ECCccCHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVT-VSQPLYLIKLQTE 208 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~-~s~~~~~~~~~~~ 208 (932)
.+++|. +..++.+..++..+. .+...++|+.|+||||+|+.+++.... ...+.|...|.. -+....++++ ++
T Consensus 4 ~~i~g~--~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~ 80 (313)
T PRK05564 4 HTIIGH--ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RN 80 (313)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HH
Confidence 457887 667888888888776 466789999999999999999986521 224566666654 2333333332 22
Q ss_pred HHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccc--cccccccccCCCCCCCCCcEEEEEeCCcccc-cc--cc
Q 036714 209 IATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMW--EAFRLEEVGIPEPSEENGCKLVVTTRSVGIC-RS--MG 283 (932)
Q Consensus 209 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~-~~--~~ 283 (932)
+.+.+... .. .+++-++|+|+++ +...+..+...+.....++.+|++|.+.+.. .- ..
T Consensus 81 ~~~~~~~~----------------p~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 81 IIEEVNKK----------------PY-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHhcC----------------cc-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 33322211 01 2345566667664 3445556655555556788888888654322 11 12
Q ss_pred ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 284 CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 284 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
+..+++.+++.++....+.+.+..- ..+.++.++..++|.|.-+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 2338999999999988887665311 13446788999999886554
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.33 E-value=8.7e-06 Score=88.51 Aligned_cols=180 Identities=15% Similarity=0.177 Sum_probs=105.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCc-EEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
.+++|. ++.++.|..++..+..+-+.++|++|+||||+|+.+++.... ..|. .++-++.++..+...+ +++.+.
T Consensus 13 ~~~~g~--~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~eln~sd~~~~~~v-r~~i~~ 87 (319)
T PLN03025 13 DDIVGN--EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG--PNYKEAVLELNASDDRGIDVV-RNKIKM 87 (319)
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc--ccCccceeeecccccccHHHH-HHHHHH
Confidence 678887 567777888777777777889999999999999999998621 2232 2222333333332222 222211
Q ss_pred HhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEEeCCc-ccccccc--ceeE
Q 036714 213 LKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVTTRSV-GICRSMG--CKEV 287 (932)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~~--~~~~ 287 (932)
...... ....++.-++|+|+++... ....+...+......+++|+++... .+..... +..+
T Consensus 88 ~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 88 FAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 110000 0012456799999998632 2222222222223456777776542 2222111 1228
Q ss_pred eccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 288 RVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 288 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
++.+++.++....+...+....... ..+....|++.++|....+.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999888765443212 24567889999998775443
No 63
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.32 E-value=7.2e-07 Score=94.53 Aligned_cols=295 Identities=19% Similarity=0.200 Sum_probs=179.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+.+.++|.|||||||++-++.. .. ..+-+.+.++....-.+...+.-.....++............ +.... .
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~---~~~~~-~ 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDT---LVRRI-G 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHH---HHHHH-h
Confidence 58899999999999999999998 32 133345666666555566666566666677665443333322 22222 5
Q ss_pred CCeEEEEEeccccccc-cccccCCCCCCCCCcEEEEEeCCccccccccceeEeccCCCH-HHHHHHHHHhhCCC--CCCC
Q 036714 237 KEKFVLILDDMWEAFR-LEEVGIPEPSEENGCKLVVTTRSVGICRSMGCKEVRVQPLSN-EEALNLFLDKVGSS--TLQI 312 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~l~~L~~-~~~~~lf~~~~~~~--~~~~ 312 (932)
++|.++|+||..+..+ -..+...+..+.+.-.|+.|+|...... +..+..++.|+. +++.++|...+... .-..
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~--ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA--GEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc--ccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 6899999999866422 1112112222334557888988653221 122267777776 47888887654321 1112
Q ss_pred ChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCc---hHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCCchhhHH
Q 036714 313 PTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDE---IHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKVQQ 389 (932)
Q Consensus 313 ~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~---~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~ 389 (932)
.......+.+|.++.+|.|++|...+...+.-.. .+...+-+..+...............+.+.+||.-|. ...+-
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt-gwe~~ 243 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT-GWERA 243 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh-hHHHH
Confidence 3445678899999999999999999987766321 2233333333433322112223567889999999999 67788
Q ss_pred HHHHhhcCCCCcccChHHHHHHHHHhCCcccchhhhhHHhHHHHHHHHHHHcccccccCC--CCEEEeCchhHHHHHHhh
Q 036714 390 CFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAKD--GRCVKMHDLIRDMALSIT 467 (932)
Q Consensus 390 cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~--~~~~~mHdlv~d~a~~~~ 467 (932)
-|--++.|...|... ...|.+.|-... .........+..+++.+++...+. ...|+.-+-+|.|+..+.
T Consensus 244 ~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 244 LFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred Hhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 899999998876544 334555443221 122334445667888888765432 234555666677777666
Q ss_pred ccC
Q 036714 468 SES 470 (932)
Q Consensus 468 ~~~ 470 (932)
.+.
T Consensus 315 ~r~ 317 (414)
T COG3903 315 HRS 317 (414)
T ss_pred Hhh
Confidence 543
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.32 E-value=2.3e-05 Score=90.11 Aligned_cols=180 Identities=14% Similarity=0.200 Sum_probs=107.1
Q ss_pred ccccccchHHHHHHHHHHhcC----CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG----DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
..++|. ++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++.. .+. ++-++.++......+ ..+
T Consensus 14 ~dlvg~--~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~i-~~~ 84 (482)
T PRK04195 14 SDVVGN--EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADVI-ERV 84 (482)
T ss_pred HHhcCC--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHHH-HHH
Confidence 678998 6677777777642 226889999999999999999999986 232 333444443332222 222
Q ss_pred HHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc------cccccCCCCCCCCCcEEEEEeCCcc-ccc-c
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR------LEEVGIPEPSEENGCKLVVTTRSVG-ICR-S 281 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iivTTR~~~-v~~-~ 281 (932)
+...... ..+...++-+||+|+++.... +..+...+. ..+..||+|+.+.. ... .
T Consensus 85 i~~~~~~---------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATS---------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhcc---------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 2211110 011113578999999976321 333322222 22345666665432 211 1
Q ss_pred cc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhc
Q 036714 282 MG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMR 342 (932)
Q Consensus 282 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 342 (932)
.. +..+++.+++.++....+.+.+....... ..++...|++.++|....+......+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 11 22289999999999988888764433222 246788999999998776655444443
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=6.4e-06 Score=93.66 Aligned_cols=177 Identities=15% Similarity=0.208 Sum_probs=107.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc---C--------------------CCc
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET---N--------------------KFN 189 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~--------------------~f~ 189 (932)
.++||. +..++.|.+++..+++ +.+.++|+.|+||||+|+.+.+...-.. . .|.
T Consensus 16 ddVIGQ--e~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 16 TTLVGQ--EHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHcCc--HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 679998 6678888888887774 5668999999999999999998873210 0 011
Q ss_pred EEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----hcCCeEEEEEeccccc--cccccccCCCCCC
Q 036714 190 VVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGML----KAKEKFVLILDDMWEA--FRLEEVGIPEPSE 263 (932)
Q Consensus 190 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~ 263 (932)
.+++++.+....+.+ +.++++.. ..++.-++|+|+++.. .....+...+...
T Consensus 94 DviEIdAas~~gVDd----------------------IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 94 DYIEMDAASNRGVDE----------------------MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred cceEecccccCCHHH----------------------HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 122222222112211 12222211 1456679999999863 3344444444333
Q ss_pred CCCcEEEEEeC-Ccccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 264 ENGCKLVVTTR-SVGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 264 ~~gs~iivTTR-~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
..++++|++|. ...+..-.. +..+++..++.++..+.+.+.+..... ....+..+.|++.++|.|.-...+
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 34556555554 444432222 223999999999999999887654322 122456688999999999654433
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=7.5e-06 Score=93.38 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=107.5
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 194 (932)
..++|. +...+.|.+++..++ .+.+.++|+.|+||||+|+.+++...... +.+.-++.+
T Consensus 15 ddVIGQ--e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 15 NELVGQ--NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 689998 667888888888776 46779999999999999999998763110 011112222
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
..+....+.++ ++++..+ ...-..+++-++|+|+++.. .....+...+.....+.++|++
T Consensus 93 DAAs~~~VddI-Reli~~~-----------------~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 93 DAASRTKVEDT-RELLDNV-----------------PYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred cccccCCHHHH-HHHHHHH-----------------hhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 22222122111 1111111 00111356678999999863 2333343333322345677777
Q ss_pred eCCc-ccccc--ccceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 273 TRSV-GICRS--MGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 273 TR~~-~v~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
|.+. .+... ..+..+++.+++.++....+.+.+..... ....+....|++.++|.+..+..
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 7653 22211 11223899999999999999887654322 22356678899999998855443
No 67
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=5.2e-05 Score=82.80 Aligned_cols=201 Identities=19% Similarity=0.250 Sum_probs=124.6
Q ss_pred ccccccchHHHHHHHHHHh----cCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
..+.+| +++++++...+ .++.+.-+.|+|.+|+|||+.++.+.+.........+ +++|++-...+...+...|
T Consensus 17 ~~l~~R--e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 17 EELPHR--EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccc--HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHH
Confidence 348888 66777776655 3444555999999999999999999999854433343 7899999999999999999
Q ss_pred HHHHhccccccchHHHHHHHHHHHHh-cCCeEEEEEeccccccc-----cccccCCCCCCCCCcEEE--EEeCCcc----
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLK-AKEKFVLILDDMWEAFR-----LEEVGIPEPSEENGCKLV--VTTRSVG---- 277 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~ii--vTTR~~~---- 277 (932)
+.+++..........+....+.+.+. .++.+++|||+++.... +-.+..... ...++|+ ..+.+..
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~--~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG--ENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc--ccceeEEEEEEeccHHHHHH
Confidence 99997433333334444455555444 36789999999975321 222221111 1144433 3444322
Q ss_pred ----ccccccceeEeccCCCHHHHHHHHHHhhC--CCCCCCChhhHHHHHHHHHHcCC-CcHHHHHHHh
Q 036714 278 ----ICRSMGCKEVRVQPLSNEEALNLFLDKVG--SSTLQIPTLDKKIINLVVEECAG-LPLAIVTVAG 339 (932)
Q Consensus 278 ----v~~~~~~~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~ 339 (932)
|....+...+..+|-+.+|-.+.+...+. .......+..-+.+..++..-+| .-.|+..+-.
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 22333444478889999999999887653 22222344444444444444444 4455554433
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.3e-05 Score=91.30 Aligned_cols=178 Identities=13% Similarity=0.110 Sum_probs=105.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcE------------------EEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV------------------VIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~------------------~~wv 194 (932)
.+++|. +...+.|..++..+.. ..+.++|++|+||||+|+.+++..... +.+.. +.++
T Consensus 14 ~dvvGq--~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~-~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 14 DEVVGQ--EHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS-GEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred HHhcCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-CCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 678997 6677888888877765 456999999999999999999987321 11211 2222
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
..+....+..+ +++.+.+. ..-..+++-++|+|+++.. ..+..+...+......+.+|++
T Consensus 91 ~~~~~~~vd~i-R~l~~~~~-----------------~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 91 DAASNNSVEDV-RDLREKVL-----------------LAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred cccccCCHHHH-HHHHHHHh-----------------hccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 22211111111 11111110 0001245678999999753 3344444444333344555555
Q ss_pred eC-Ccccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 273 TR-SVGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 273 TR-~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
|. ...+..... +..+++.+++.++....+.+.+..... ....+.+..|++.++|.+--+.
T Consensus 153 t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 153 TTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred cCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 54 334432222 223999999999999999987644322 1135678889999999886553
No 69
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=1.9e-06 Score=88.68 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=62.6
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc--cCHHHHHHHHHHHHhccccccchHH-----HHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LYLIKLQTEIATALKQSLLENEDKV-----RRAG 228 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~ 228 (932)
....++|+|++|+|||||++++++... ..+|+.+.|+.+... .++.++++.+...+-....+..... ..+.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999873 248999999997766 7899999888332221111111111 1111
Q ss_pred HHHH-HHhcCCeEEEEEecccc
Q 036714 229 ELLG-MLKAKEKFVLILDDMWE 249 (932)
Q Consensus 229 ~l~~-~l~~~kr~LlVlDdv~~ 249 (932)
...+ ....+++.++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 1112 22358999999999975
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.28 E-value=1.6e-05 Score=86.95 Aligned_cols=180 Identities=12% Similarity=0.170 Sum_probs=104.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE--CCccCHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV--SQPLYLIKLQTEIAT 211 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~ 211 (932)
.+++|+ ++.++.+..++..+..+.+.|+|++|+||||+|+.+++.... ..+. ..++.. +.......+...+ .
T Consensus 17 ~~~~g~--~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~-~~~i~~~~~~~~~~~~~~~~i-~ 90 (319)
T PRK00440 17 DEIVGQ--EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG--EDWR-ENFLELNASDERGIDVIRNKI-K 90 (319)
T ss_pred HHhcCc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Cccc-cceEEeccccccchHHHHHHH-H
Confidence 678998 678888988888777777899999999999999999998632 1221 122222 2222221111111 1
Q ss_pred HHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEEeCCc-ccccccc--cee
Q 036714 212 ALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVTTRSV-GICRSMG--CKE 286 (932)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~~--~~~ 286 (932)
.+.... ......+-++++|+++... ....+...+......+++|+++... .+..... ...
T Consensus 91 ~~~~~~---------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 91 EFARTA---------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHhcC---------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 111000 0001235689999986531 2222322222223456677766432 2222111 112
Q ss_pred EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 287 VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 287 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
+++.+++.++....+...+..... .-.++.+..+++.++|.+.-+...
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 899999999998888887654322 123567888999999988764433
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.28 E-value=1.2e-05 Score=79.26 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=91.1
Q ss_pred ccccccchHHHHHHH---HHHhc--CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEI---WEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTE 208 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l---~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 208 (932)
.+|||. ++.++.+ ++... ++...-+-++|++|+||||||..+++... ..| .+.+.+.-....++.
T Consensus 24 ~efiGQ--~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~---~~~---~~~sg~~i~k~~dl~-- 93 (233)
T PF05496_consen 24 DEFIGQ--EHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG---VNF---KITSGPAIEKAGDLA-- 93 (233)
T ss_dssp CCS-S---HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-----E---EEEECCC--SCHHHH--
T ss_pred HHccCc--HHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC---CCe---EeccchhhhhHHHHH--
Confidence 789998 4444433 33322 34578899999999999999999999873 233 223322111111111
Q ss_pred HHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--c-------cccccC--CCCCCC-----------CC
Q 036714 209 IATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--R-------LEEVGI--PEPSEE-----------NG 266 (932)
Q Consensus 209 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~-------~~~l~~--~~~~~~-----------~g 266 (932)
.++..+ +++-+|.+|+++... + .++... ... .+ +-
T Consensus 94 --------------------~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG-~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 94 --------------------AILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIG-KGPNARSIRINLPPF 150 (233)
T ss_dssp --------------------HHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBS-SSSS-BEEEEE----
T ss_pred --------------------HHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEec-cccccceeeccCCCc
Confidence 111222 234577778886421 0 111110 000 11 22
Q ss_pred cEEEEEeCCcccccccccee---EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhc
Q 036714 267 CKLVVTTRSVGICRSMGCKE---VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMR 342 (932)
Q Consensus 267 s~iivTTR~~~v~~~~~~~~---~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 342 (932)
+-|=.|||.-.+........ .+++..+.+|-.++..+.+..-. -+-.++.+.+|++++.|-|.-..-+.+..+
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~---i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN---IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC---CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34557888866655544433 48999999999999988665432 233467899999999999976655544443
No 72
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.26 E-value=1.7e-05 Score=81.82 Aligned_cols=176 Identities=18% Similarity=0.255 Sum_probs=107.6
Q ss_pred ccccccch-HHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
.++||.+. -..-.-|.+.+.++.++.+.+||++|+||||||+.+.+... .+- ..||..|....-..-.+.|.++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk---~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK---KHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC---CCc--eEEEEEeccccchHHHHHHHHH
Confidence 45666532 00123456667788899999999999999999999999762 221 6678777665433333444333
Q ss_pred HhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEE--EeCCcccc----ccccc
Q 036714 213 LKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVV--TTRSVGIC----RSMGC 284 (932)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TTR~~~v~----~~~~~ 284 (932)
-. . ...+.++|.+|.+|.|..- .+-+.+ +|.-.+|.-++| ||-+.... -...+
T Consensus 213 aq--------------~--~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 213 AQ--------------N--EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred HH--------------H--HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhcc
Confidence 21 1 1122568999999999753 233333 233356776665 66654331 11122
Q ss_pred eeEeccCCCHHHHHHHHHHhh---CCCCC---CCCh----hhHHHHHHHHHHcCCCcHH
Q 036714 285 KEVRVQPLSNEEALNLFLDKV---GSSTL---QIPT----LDKKIINLVVEECAGLPLA 333 (932)
Q Consensus 285 ~~~~l~~L~~~~~~~lf~~~~---~~~~~---~~~~----~~~~~~~~i~~~~~G~Pla 333 (932)
..+-|++|..++...++.+.. +.... ..+. -...+.+-++..|+|...+
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 338999999999999998843 22111 1111 2345777788889987654
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.6e-05 Score=90.22 Aligned_cols=179 Identities=16% Similarity=0.161 Sum_probs=105.3
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCC---------C-------------cE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNK---------F-------------NV 190 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---------f-------------~~ 190 (932)
..++|. +..+..+...+..+. .+.+.++|+.|+||||+|+.+++........ + ..
T Consensus 21 ~dliGq--~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 21 AELQGQ--EVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 678997 667777777776665 4688999999999999999999986321100 0 01
Q ss_pred EEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcE
Q 036714 191 VIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCK 268 (932)
Q Consensus 191 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 268 (932)
++.+.......+.++. ++.+.. ...-..+++-++|+|+++.. ..+..+...+......+.
T Consensus 99 v~eidaas~~~vd~Ir-~iie~a-----------------~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~v 160 (507)
T PRK06645 99 IIEIDAASKTSVDDIR-RIIESA-----------------EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHII 160 (507)
T ss_pred EEEeeccCCCCHHHHH-HHHHHH-----------------HhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEE
Confidence 1122221122222211 111110 00001356778999999863 334544444433344556
Q ss_pred EEE-EeCCcccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 269 LVV-TTRSVGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 269 iiv-TTR~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
+|+ ||+...+..... +..+++.+++.++....+.+.+..... ....+....|++.++|.+.-+.
T Consensus 161 fI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 161 FIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred EEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 554 444444433221 223899999999999999987754432 1234567789999999875443
No 74
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.25 E-value=6.8e-05 Score=88.17 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=102.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCC---cEEEEEEECC---ccCHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF---NVVIWVTVSQ---PLYLIKLQT 207 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~---~~~~~~~~~ 207 (932)
+.++|+ +..+..+...+.......+.|+|++|+||||+|+.+++.... ...+ ...-|+.+.. ..+...+..
T Consensus 154 ~~iiGq--s~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~-~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQ--ERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK-LKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeC--cHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh-ccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 678998 556677777776666778999999999999999999887522 2222 1233444332 112222211
Q ss_pred HHH---------------HHHhccc---------------cccch--HHHHHHHHHHHHhcCCeEEEEEeccccc--ccc
Q 036714 208 EIA---------------TALKQSL---------------LENED--KVRRAGELLGMLKAKEKFVLILDDMWEA--FRL 253 (932)
Q Consensus 208 ~i~---------------~~l~~~~---------------~~~~~--~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~ 253 (932)
.++ ...+... -++.+ .......+.+.+ ..+++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~L-e~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVL-EDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHH-hhCeEEeecceeccCCcccc
Confidence 111 1101000 00000 011122233333 456677776655542 335
Q ss_pred ccccCCCCCCCCCcEEEE--EeCCcc-ccccccc--eeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcC
Q 036714 254 EEVGIPEPSEENGCKLVV--TTRSVG-ICRSMGC--KEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECA 328 (932)
Q Consensus 254 ~~l~~~~~~~~~gs~iiv--TTR~~~-v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~ 328 (932)
+.+...+....+...|++ ||++.. +...... ..+.+.+++.+|.+.++.+.+....... ..++.+.|.+.+.
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~ 386 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTI 386 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCC
Confidence 555444443344444555 566433 2221111 2278899999999999998765432111 1334444554444
Q ss_pred CCcHHHHHHHh
Q 036714 329 GLPLAIVTVAG 339 (932)
Q Consensus 329 G~Plai~~~~~ 339 (932)
.-+.++..++.
T Consensus 387 ~gRraln~L~~ 397 (615)
T TIGR02903 387 EGRKAVNILAD 397 (615)
T ss_pred cHHHHHHHHHH
Confidence 33455544433
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=7.4e-06 Score=90.92 Aligned_cols=189 Identities=13% Similarity=0.123 Sum_probs=105.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
.+++|. +..+..|..++..+.+ +.+.++|+.|+||||+|+.+++..... .... ...+..... ...|...
T Consensus 18 ~dvVGQ--e~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce--~~~~--~~pCg~C~s----C~~i~~g 87 (484)
T PRK14956 18 RDVIHQ--DLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE--NPIG--NEPCNECTS----CLEITKG 87 (484)
T ss_pred HHHhCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc--cccC--ccccCCCcH----HHHHHcc
Confidence 678998 6677888888887775 468999999999999999999876321 1000 000000000 0111111
Q ss_pred Hhcccc---c-cchHHHHHHHHHHH----HhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEe-CCcccccc
Q 036714 213 LKQSLL---E-NEDKVRRAGELLGM----LKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTT-RSVGICRS 281 (932)
Q Consensus 213 l~~~~~---~-~~~~~~~~~~l~~~----l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~ 281 (932)
...+.. . .....+.+.++... -..++.-++|+|+++.. ..+..+...+........+|++| ....+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 100000 0 00001111222211 12456679999999863 34555544443222344444444 44444332
Q ss_pred cc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 282 MG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 282 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
.. +..|.+.+++.++..+.+.+.+..... .-..+....|++.++|.+.-+.
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHHH
Confidence 22 223899999999998888887644322 1235678889999999985443
No 76
>PRK09087 hypothetical protein; Validated
Probab=98.21 E-value=1.8e-05 Score=80.77 Aligned_cols=140 Identities=12% Similarity=0.133 Sum_probs=85.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+.+.|+|+.|+|||+|++.+++... ..+++.. .+..++. ..+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~------~~~~~~~---------------------~~~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPN------EIGSDAA---------------------NAAAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHH------HcchHHH---------------------Hhhhc
Confidence 46799999999999999999887641 1133211 1111111 11111
Q ss_pred CCeEEEEEecccccc-ccccccCCCC-CCCCCcEEEEEeCC---------cccccccccee-EeccCCCHHHHHHHHHHh
Q 036714 237 KEKFVLILDDMWEAF-RLEEVGIPEP-SEENGCKLVVTTRS---------VGICRSMGCKE-VRVQPLSNEEALNLFLDK 304 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~-~~~~l~~~~~-~~~~gs~iivTTR~---------~~v~~~~~~~~-~~l~~L~~~~~~~lf~~~ 304 (932)
-+|++||+.... +-+.+...+. ....|..||+|++. +++...+.... +++++++.++-..+++++
T Consensus 89 ---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 ---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred ---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 278889996421 1111211111 01346679998874 23333444444 999999999999999988
Q ss_pred hCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 305 VGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
+..... .-.+++..-|++.+.|..-++..+
T Consensus 166 ~~~~~~---~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 166 FADRQL---YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHcCC---CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 754322 223567888888888887776643
No 77
>PTZ00202 tuzin; Provisional
Probab=98.20 E-value=5.7e-05 Score=81.28 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=97.0
Q ss_pred cccCCcccccccchHHHHHHHHHHhcCC---CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHH
Q 036714 128 GLTLTMATLAGEKTKKVVEEIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIK 204 (932)
Q Consensus 128 ~~~~~~~~~vGr~~~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 204 (932)
+.|.+...|+|| +++...+...|.+. ..+++.|+|++|+|||||++.+.... + + ..++++.. +..+
T Consensus 256 ~lPa~~~~FVGR--eaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----~-~-~qL~vNpr---g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSR--EAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----G-M-PAVFVDVR---GTED 324 (550)
T ss_pred CCCCCccCCCCc--HHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----C-c-eEEEECCC---CHHH
Confidence 344556899999 66777777777532 25699999999999999999999764 1 1 13333322 6799
Q ss_pred HHHHHHHHHhccccccc-hHHHHHH-HHHHHHhc-CCeEEEEEecccccccccccc---CCCCCCCCCcEEEEEeCCccc
Q 036714 205 LQTEIATALKQSLLENE-DKVRRAG-ELLGMLKA-KEKFVLILDDMWEAFRLEEVG---IPEPSEENGCKLVVTTRSVGI 278 (932)
Q Consensus 205 ~~~~i~~~l~~~~~~~~-~~~~~~~-~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~---~~~~~~~~gs~iivTTR~~~v 278 (932)
++..|+.+||.+..... +....+. .+.+.... +++.+||+-= .+-..+..+- ..+.....-|.|++---.+.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence 99999999997432221 2222222 22222223 6666666642 2221211110 012222345677765544433
Q ss_pred ccccc----ceeEeccCCCHHHHHHHHHHh
Q 036714 279 CRSMG----CKEVRVQPLSNEEALNLFLDK 304 (932)
Q Consensus 279 ~~~~~----~~~~~l~~L~~~~~~~lf~~~ 304 (932)
..... -+.|-+++++.++|.....+.
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 22111 112889999999998877664
No 78
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.7e-05 Score=84.14 Aligned_cols=195 Identities=14% Similarity=0.107 Sum_probs=106.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccC-CCc-EEEEEEECCccCHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN-KFN-VVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~-~~~wv~~s~~~~~~~~~~~i~ 210 (932)
..++|. ++.++.+.+.+..+.+ ..+.++|+.|+||+|+|..+++..--... ... +..-...-.....-...+.|.
T Consensus 19 ~~iiGq--~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 19 TALFGH--AAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 679997 6778888888887774 56899999999999999999987632110 000 000000000000000111111
Q ss_pred HHHhccc-------cc------cchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEE
Q 036714 211 TALKQSL-------LE------NEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVV 271 (932)
Q Consensus 211 ~~l~~~~-------~~------~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 271 (932)
..-..+. .+ ..-..+.+.++.+.+. .+++-++|+|+++.. .....+...+.....++.+|+
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 1100000 00 0011233344433332 356779999999753 223333333332234556677
Q ss_pred EeCCc-cccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 272 TTRSV-GICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 272 TTR~~-~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
+|... .+.... .+..+.+.+++.++..+++.+..+.. ..+....+++.++|.|.....+
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-------~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-------PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 66654 332211 23339999999999999998764321 1122367899999999866544
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.6e-05 Score=88.21 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=104.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 194 (932)
.+++|. +.....|...+..+.+ +.+.++|++|+||||+|+.+++....... ....+..+
T Consensus 14 ~divGq--~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 14 SEVVGQ--DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 679998 5567777777777765 56899999999999999999987632100 01112233
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
+.+...++..+ ++|.+.... .. ..+++-++|+|+++.. ...+.+...+........+|++
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~----------------~p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGY----------------RP-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhh----------------Ch-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 33222222222 122211110 00 1345679999999753 2333343333322234444444
Q ss_pred eCC-cccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCC-cHHHHHHHhh
Q 036714 273 TRS-VGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGL-PLAIVTVAGC 340 (932)
Q Consensus 273 TR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~~ 340 (932)
|.+ ..+..... ...+++.+++.++....+.+.+..... .-.+++...|++.++|. +.++..+-.+
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 433 33332221 122899999999998888887643322 12345677888888654 5666665443
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7e-08 Score=96.37 Aligned_cols=182 Identities=18% Similarity=0.118 Sum_probs=113.6
Q ss_pred CCCEEeCCCCCCcc-cCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecCh-hhhhhhhcccCCCCcc
Q 036714 611 NLSHLYLSSPRLKK-FPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTL-NDFNLYVKSTDGRGLK 688 (932)
Q Consensus 611 ~L~~L~l~~~~l~~-~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~ 688 (932)
.|++||++...++. --.++++.+++|+.|.+. +..+.+.....++.- .+|+.|+++.++. +.....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE-g~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~---------- 253 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE-GLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQ---------- 253 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccc-ccccCcHHHHHHhcc-ccceeeccccccccchhHHH----------
Confidence 47888887766542 112446777778877777 445555556677776 7788887776532 111000
Q ss_pred eEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCcccc-----ccccCCccEEEEecCC
Q 036714 689 NYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASL-----NDFSHDLKVLRFDSCK 763 (932)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-----~~~~~~L~~L~L~~c~ 763 (932)
-.+..++.|..|.|++|...... ....++|+.|+|++|.
T Consensus 254 ------------------------------------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 254 ------------------------------------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred ------------------------------------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 02345667888888888744322 2345899999999986
Q ss_pred CCccccccc-ccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCccc
Q 036714 764 NLKNLFSLR-LLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLV 842 (932)
Q Consensus 764 ~l~~l~~~~-~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~ 842 (932)
..-....+. ....+++|..|++++|..++.-...+ +-.|+.|++|.++.|-.+-.-.. .....
T Consensus 298 rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~---------------~~kf~~L~~lSlsRCY~i~p~~~-~~l~s 361 (419)
T KOG2120|consen 298 RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---------------FFKFNYLQHLSLSRCYDIIPETL-LELNS 361 (419)
T ss_pred hhhhhhHHHHHHHhCCceeeeccccccccCchHHHH---------------HHhcchheeeehhhhcCCChHHe-eeecc
Confidence 432211111 23478899999999998876632211 55789999999999864422111 01223
Q ss_pred CCCccEEEecccCC
Q 036714 843 CNSLQEIEVHRCPK 856 (932)
Q Consensus 843 ~p~L~~L~i~~C~~ 856 (932)
-|+|.+|++.+|-.
T Consensus 362 ~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 362 KPSLVYLDVFGCVS 375 (419)
T ss_pred CcceEEEEeccccC
Confidence 57899999998843
No 81
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=6.2e-06 Score=88.23 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=62.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc--CHHHHHHHHHHHHhccccccchHHH-----HHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL--YLIKLQTEIATALKQSLLENEDKVR-----RAGE 229 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~ 229 (932)
-...+|+|++|+||||||+++|+.... .+|+.++||.+.+.. .+.++++.|...+-....+.....+ .+..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~--nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITT--NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh--hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999998743 389999999988877 7778888776322222222221111 1111
Q ss_pred HHHHH-hcCCeEEEEEecccc
Q 036714 230 LLGML-KAKEKFVLILDDMWE 249 (932)
Q Consensus 230 l~~~l-~~~kr~LlVlDdv~~ 249 (932)
..+.+ ..+++++|++|++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 11222 367999999999965
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.16 E-value=1.4e-05 Score=82.44 Aligned_cols=170 Identities=14% Similarity=0.202 Sum_probs=100.0
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhc
Q 036714 136 LAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQ 215 (932)
Q Consensus 136 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 215 (932)
++| .-......+..+......+.+.|+|+.|+|||+|++.+++.... ....+.++.+.....
T Consensus 25 ~~~-~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~-------------- 86 (235)
T PRK08084 25 YPG-DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW-------------- 86 (235)
T ss_pred ccC-ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh--------------
Confidence 346 33445666666655555678999999999999999999998632 233456665432100
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEEeccccc---ccccc-c---cCCCCCCCCCcEEEEEeCCc---------ccc
Q 036714 216 SLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA---FRLEE-V---GIPEPSEENGCKLVVTTRSV---------GIC 279 (932)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~---~~~~~-l---~~~~~~~~~gs~iivTTR~~---------~v~ 279 (932)
. ..+..+.+. +.-+|++||+... ..|+. + ...... ..+.++|+||+.. ++.
T Consensus 87 ------~----~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~ 153 (235)
T PRK08084 87 ------F----VPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLA 153 (235)
T ss_pred ------h----hHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHH
Confidence 0 001111221 1247899999652 23332 1 111111 1224799999853 223
Q ss_pred cccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHh
Q 036714 280 RSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAG 339 (932)
Q Consensus 280 ~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 339 (932)
..+.+.. ++++++++++-.+++.+++..... .-.+++..-|++.+.|..-++..+-.
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3344444 899999999999998875543222 22356778888888877666544433
No 83
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.16 E-value=4.3e-06 Score=83.39 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=33.1
Q ss_pred cccccchHHHHHHHHHHh---cCCCeeEEEEEeCCCChHHHHHHHHHHHHhhc
Q 036714 135 TLAGEKTKKVVEEIWEDL---MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKE 184 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 184 (932)
.|+|| +++++++...+ .....+.+.|+|++|+|||+|+++++......
T Consensus 1 ~fvgR--~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGR--EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT---HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCH--HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999 88999999888 23457999999999999999999999988543
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.9e-05 Score=89.56 Aligned_cols=181 Identities=15% Similarity=0.231 Sum_probs=105.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 194 (932)
.+++|. +..++.|..++..+++ +.+.++|+.|+||||+|+.+++...... +.|.-++.+
T Consensus 16 ddIIGQ--e~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 16 ADLVGQ--EHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 679998 6788888888887764 5789999999999999999998752110 001111222
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivT 272 (932)
..+....+..+ +++++... ..- ..+++-++|+|++.... ....+...+......+++|++
T Consensus 94 daAs~~gVd~I-Relle~a~----------------~~P-~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa 155 (709)
T PRK08691 94 DAASNTGIDNI-REVLENAQ----------------YAP-TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (709)
T ss_pred eccccCCHHHH-HHHHHHHH----------------hhh-hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 22222222111 11111100 000 12456789999997532 222333223222345567766
Q ss_pred eCCc-cccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 273 TRSV-GICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 273 TR~~-~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
|.+. .+.... .+..+++.+++.++....+.+.+..... .-..+....|++.++|.+.-+..+
T Consensus 156 Ttd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 156 TTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred eCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHHHH
Confidence 6543 332211 1122889999999999999887754432 123467888999999988554443
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.9e-05 Score=87.63 Aligned_cols=181 Identities=17% Similarity=0.189 Sum_probs=105.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 194 (932)
.+++|. +..++.+...+..+++ +.+.++|+.|+||||+|+.+++...... ..|..++++
T Consensus 16 ~diiGq--~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 16 AEVAGQ--QHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 678998 6677888888877664 5578999999999999999998763110 012223333
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
.......++++ ++|.+.+ ...-..+++-++|+|++... ...+.+...+......+.+|++
T Consensus 94 daas~~gvd~i-r~ii~~~-----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVEET-KEILDNI-----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHHHH-HHHHHHH-----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 32222222221 1111111 11111356679999999753 2344444334333345555544
Q ss_pred e-CCcccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH-HHHHH
Q 036714 273 T-RSVGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL-AIVTV 337 (932)
Q Consensus 273 T-R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 337 (932)
| ....+..... +..+++.+++.++....+.+.+..... ....+....|++.++|.+. |+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 4333332222 223999999999988888876543321 2234567789999999764 44443
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=4.4e-05 Score=84.30 Aligned_cols=175 Identities=13% Similarity=0.117 Sum_probs=99.8
Q ss_pred ccccccchHHHHHHHHHHhcCCC----------eeEEEEEeCCCChHHHHHHHHHHHHhhcc------------------
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK----------VTKIGVWGMGGIGKTTIMKEINNRLQKET------------------ 185 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------ 185 (932)
..++|. +..++.|.+++..+. .+.+.++|++|+|||++|+.+++...-..
T Consensus 5 ~~IiGq--~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 5 DDLVGQ--EAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhccCh--HHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 467887 667777888887653 46688999999999999999988652111
Q ss_pred CCCcEEEEEEEC-CccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCC
Q 036714 186 NKFNVVIWVTVS-QPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPS 262 (932)
Q Consensus 186 ~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~ 262 (932)
.|.| +.++... ....+.++ +++.+.+.. .-..+++-++|+|+++.. .....+...+..
T Consensus 83 ~hpD-~~~i~~~~~~i~i~~i-R~l~~~~~~-----------------~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 83 THPD-VRVVAPEGLSIGVDEV-RELVTIAAR-----------------RPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCCC-EEEeccccccCCHHHH-HHHHHHHHh-----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 0111 2222111 11111111 112111111 001245568888999763 222233323332
Q ss_pred CCCCcEEEEEeCC-cccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 263 EENGCKLVVTTRS-VGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 263 ~~~gs~iivTTR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
...+..+|++|.+ ..+..-.. +..+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 2345556666655 34432222 233999999999999888754331 1 355788999999999755433
No 87
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=1.6e-06 Score=68.44 Aligned_cols=57 Identities=37% Similarity=0.438 Sum_probs=28.9
Q ss_pred CceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-cccccccccccccccc
Q 036714 517 ILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRWC 574 (932)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~ 574 (932)
+|++|++++| .+..+|...|.++++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4455555555 4555555555555555555555555554432 3444555555555544
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.11 E-value=2.4e-05 Score=92.79 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=96.1
Q ss_pred ccccccchHHHH---HHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHH
Q 036714 134 ATLAGEKTKKVV---EEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 134 ~~~vGr~~~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 210 (932)
.+++|+ +..+ ..+...+..+..+.+.++|++|+||||+|+.+++... ..| ..++.+. ..+.++ ++++
T Consensus 28 dd~vGQ--e~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~---~~f---~~lna~~-~~i~di-r~~i 97 (725)
T PRK13341 28 EEFVGQ--DHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR---AHF---SSLNAVL-AGVKDL-RAEV 97 (725)
T ss_pred HHhcCc--HHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc---Ccc---eeehhhh-hhhHHH-HHHH
Confidence 678998 3333 3566667777777889999999999999999998752 233 1111110 011111 0100
Q ss_pred HHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCcc----ccccc--
Q 036714 211 TALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVG----ICRSM-- 282 (932)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~----v~~~~-- 282 (932)
......... .+++.++||||++.. ...+.+...+ ..|+.++|+++.++ +....
T Consensus 98 --------------~~a~~~l~~--~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 98 --------------DRAKERLER--HGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred --------------HHHHHHhhh--cCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 011111111 245789999999753 3333443322 23555555433222 11111
Q ss_pred cceeEeccCCCHHHHHHHHHHhhCCCC----CCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 283 GCKEVRVQPLSNEEALNLFLDKVGSST----LQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 283 ~~~~~~l~~L~~~~~~~lf~~~~~~~~----~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
....+.+++++.++...++.+.+.... .....-.++....|++.+.|....+.
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 122289999999999999988664100 00112235667888888888755433
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4e-05 Score=86.22 Aligned_cols=178 Identities=16% Similarity=0.199 Sum_probs=107.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCee-EEEEEeCCCChHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVT-KIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 194 (932)
.++||. +..++.+.+.+..+.++ .+.++|+.|+||||+|+.+++...-.. ..+.-++.+
T Consensus 13 ~dliGQ--e~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQ--DVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 678998 66777787887777754 899999999999999999987541100 112223444
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
+.+....+.++ ++|.+..... - ..+++-++|+|++... ...+.+...+....+.+++|++
T Consensus 91 daas~~~vddI-R~Iie~~~~~----------------P-~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 91 DAASNTSVDDI-KVILENSCYL----------------P-ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred ecccCCCHHHH-HHHHHHHHhc----------------c-ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 44433333332 2222221100 0 1245668999999753 2334443333333446666666
Q ss_pred eCC-ccccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 273 TRS-VGICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 273 TR~-~~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
|.. ..+.... .+..+++.+++.++....+.+.+..... .-..+.+..|++.++|.+..+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 643 3433222 1222899999999999999887754432 223456778999999887543
No 90
>PRK08727 hypothetical protein; Validated
Probab=98.11 E-value=2.4e-05 Score=80.68 Aligned_cols=168 Identities=12% Similarity=0.137 Sum_probs=96.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
..|++.+ ...+..+.....+.....+.|+|++|+|||+|++++++.... . ...+.|++..+ ....+.
T Consensus 19 ~~f~~~~-~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~--~-~~~~~y~~~~~------~~~~~~--- 85 (233)
T PRK08727 19 DSYIAAP-DGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQ--A-GRSSAYLPLQA------AAGRLR--- 85 (233)
T ss_pred hhccCCc-HHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--c-CCcEEEEeHHH------hhhhHH---
Confidence 4566543 234444444433333456999999999999999999998632 2 23455665322 111110
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc---cccc-ccCCCCC-CCCCcEEEEEeCCc---------ccc
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF---RLEE-VGIPEPS-EENGCKLVVTTRSV---------GIC 279 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~iivTTR~~---------~v~ 279 (932)
..+..+ .+.-+||+||+.... .++. +...+.. ...|..||+||+.. ++.
T Consensus 86 ---------------~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ---------------DALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ---------------HHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 112222 134589999996421 2221 1111110 12456799999852 222
Q ss_pred cccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 280 RSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 280 ~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
..+.... +++++++.++-..++.+++..... .-.++....|++.++|..-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 2222233 899999999999999986643221 223567778888888766555
No 91
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=2.4e-06 Score=67.39 Aligned_cols=60 Identities=38% Similarity=0.468 Sum_probs=56.0
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCC
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNI 553 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 553 (932)
+++.+++.+|.+..++...|..+++|++|++++| .+..++...|.++++|++|++++|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999999999999999999999998 88999988899999999999999974
No 92
>PF14516 AAA_35: AAA-like domain
Probab=98.10 E-value=0.0012 Score=71.92 Aligned_cols=201 Identities=12% Similarity=0.140 Sum_probs=114.9
Q ss_pred CCcccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-----cCHHHH
Q 036714 131 LTMATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-----LYLIKL 205 (932)
Q Consensus 131 ~~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~ 205 (932)
..++..|+|. ...+++.+.+.+. -..+.|.|+-.+|||+|...+.+.... ..+ ..++++.... .+....
T Consensus 8 ~~~~~Yi~R~--~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~--~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 8 LDSPFYIERP--PAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ--QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCcccCch--HHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH--CCC-EEEEEEeecCCCcccCCHHHH
Confidence 3345678884 2334455555543 368999999999999999999998742 344 4557765442 245556
Q ss_pred HHHHHHHHhccccccc----------hHHHHHHHHHHH-Hh--cCCeEEEEEeccccccc---c-ccccCCCC-------
Q 036714 206 QTEIATALKQSLLENE----------DKVRRAGELLGM-LK--AKEKFVLILDDMWEAFR---L-EEVGIPEP------- 261 (932)
Q Consensus 206 ~~~i~~~l~~~~~~~~----------~~~~~~~~l~~~-l~--~~kr~LlVlDdv~~~~~---~-~~l~~~~~------- 261 (932)
++.++..+.....-.. .........+.. ++ .+++.+|++|+|+.... + .++...+.
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 6665555543321110 011122222222 22 25899999999975321 1 12211110
Q ss_pred -CCCCCc--EEEEEeCCccccc-----ccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH
Q 036714 262 -SEENGC--KLVVTTRSVGICR-----SMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL 332 (932)
Q Consensus 262 -~~~~gs--~iivTTR~~~v~~-----~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 332 (932)
...... -|++.+....... ..+... ++|++++.+|...|..++-.. .. ....++|...+||+|.
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~---~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS---QEQLEQLMDWTGGHPY 234 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC---HHHHHHHHHHHCCCHH
Confidence 000111 1222221111111 122233 899999999999998875221 11 2338999999999999
Q ss_pred HHHHHHhhhcCC
Q 036714 333 AIVTVAGCMRGV 344 (932)
Q Consensus 333 ai~~~~~~L~~~ 344 (932)
-+..++..+..+
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999998663
No 93
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=4.7e-06 Score=98.75 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=46.3
Q ss_pred eeEEEccCCCCc-ccCccccccccccccccccccccCCCC-ChhccccCcEeecccCCCc-ccccccccCCCCCEEeCCC
Q 036714 543 LKVLNLSRTNIK-VLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIE-EVPEGMEMLENLSHLYLSS 619 (932)
Q Consensus 543 L~~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~ 619 (932)
++.|+|++|.+. .+|..++.+++|++|+|++|.....+| .++.+++|+.|++++|.+. .+|..++.+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455566655554 455555566666666666554444555 4556666666666666555 4555555666666666665
Q ss_pred CCCc
Q 036714 620 PRLK 623 (932)
Q Consensus 620 ~~l~ 623 (932)
|.+.
T Consensus 500 N~l~ 503 (623)
T PLN03150 500 NSLS 503 (623)
T ss_pred Cccc
Confidence 5544
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.09 E-value=5.5e-05 Score=75.50 Aligned_cols=159 Identities=17% Similarity=0.245 Sum_probs=91.5
Q ss_pred HHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc-------------------CCCcEEEEEEEC-CccCHHHH
Q 036714 147 EIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIWVTVS-QPLYLIKL 205 (932)
Q Consensus 147 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s-~~~~~~~~ 205 (932)
.+.+.+..+.+ ..+.++|+.|+||||+|+.+.+...... .+.|. .++... .....+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 35555656655 6799999999999999999998863210 11122 222211 11222111
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCc-cccccc
Q 036714 206 QTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSV-GICRSM 282 (932)
Q Consensus 206 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~ 282 (932)
+++.+.+... -..+.+-++|+|++... ...+.+...+......+.+|++|++. .+....
T Consensus 82 -~~i~~~~~~~-----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 82 -RELVEFLSRT-----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred -HHHHHHHccC-----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 1222221110 01245678999998753 23344433333334456677766643 332211
Q ss_pred c--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHH
Q 036714 283 G--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLA 333 (932)
Q Consensus 283 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 333 (932)
. ...+++.+++.++..+.+.+. | . .++.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g---i-----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G---I-----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C---C-----CHHHHHHHHHHcCCCccc
Confidence 1 223899999999998888776 2 1 146788999999998853
No 95
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=6.2e-05 Score=81.91 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=107.6
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccC-CCcEEEEEEECCccCHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-KFNVVIWVTVSQPLYLIKLQTEIAT 211 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~ 211 (932)
..++|. ++....+...+..+. ...+.|+|+.|+||||+|..+++..-.... .+.... ...++..-...+.|..
T Consensus 23 ~~l~Gh--~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 23 TRLFGH--EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQ 97 (351)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHc
Confidence 779998 778888888888776 456999999999999999999998732100 011110 0011111112222222
Q ss_pred HHhcc-------ccc------cchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcE-EEE
Q 036714 212 ALKQS-------LLE------NEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCK-LVV 271 (932)
Q Consensus 212 ~l~~~-------~~~------~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-iiv 271 (932)
.-..+ ... ..-..+.+..+.+.+. .+++-++|+|+++.. .....+...+........ |++
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 11000 000 0001223333333332 356779999999863 222333222222223344 444
Q ss_pred EeCCccccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 272 TTRSVGICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 272 TTR~~~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
|++...+.... .+..+++.+++.++...++.+..... . ...+.+..+++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44443333222 22239999999999999998742111 1 224557789999999998765443
No 96
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=5.7e-05 Score=87.70 Aligned_cols=191 Identities=17% Similarity=0.210 Sum_probs=105.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
.++||. +..++.|...+..+++ ..+.++|+.|+||||+|+.+++...... .+. ..++..-...+.|...
T Consensus 16 ~divGQ--e~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~~~-------~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQ--EHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCET-GIT-------ATPCGECDNCREIEQG 85 (647)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhcc-CCC-------CCCCCCCHHHHHHHcC
Confidence 679998 6678888888887765 4568999999999999999998863211 000 0000000111111100
Q ss_pred Hhccc---ccc-chHHHHHHHHHHHH----hcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCC-cccccc
Q 036714 213 LKQSL---LEN-EDKVRRAGELLGML----KAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRS-VGICRS 281 (932)
Q Consensus 213 l~~~~---~~~-~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~ 281 (932)
-..+. ... ....+.++.+.... ..+++-++|+|+++.. .....+...+.......++|++|.+ ..+..-
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 00000 000 00111111222111 2456779999999853 2344443333322334555555544 444321
Q ss_pred c--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 282 M--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 282 ~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
. .+..|++.+++.++....+.+.+..... ....+....|++.++|.+.-+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 2333999999999999999886633221 123456788999999988754444
No 97
>PLN03150 hypothetical protein; Provisional
Probab=98.06 E-value=6.2e-06 Score=97.74 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=89.2
Q ss_pred CceEEEeecCCCccCCChhhhccCCceeEEEccCCCCc-ccCccccccccccccccccccccCCCC-ChhccccCcEeec
Q 036714 517 ILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIK-VLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDL 594 (932)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l 594 (932)
.++.|+|++|.....+|..+ ..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.....+| .++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47889999985555677764 89999999999999997 889899999999999999988777888 7999999999999
Q ss_pred ccCCCc-ccccccccC-CCCCEEeCCCCC
Q 036714 595 EETGIE-EVPEGMEML-ENLSHLYLSSPR 621 (932)
Q Consensus 595 ~~~~i~-~lp~~~~~l-~~L~~L~l~~~~ 621 (932)
++|.+. .+|..+..+ .++..+++.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 999887 788887654 467788888876
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.06 E-value=9.3e-05 Score=82.30 Aligned_cols=182 Identities=13% Similarity=0.199 Sum_probs=106.1
Q ss_pred cccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc-------------------CCCcEEE
Q 036714 133 MATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVI 192 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~ 192 (932)
-..++|. +..++.+.+++..+.. +.+.++|++|+||||+|+.+++...... .+++. .
T Consensus 13 ~~~iig~--~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 13 FEDVIGQ--EHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred HhhccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 3678998 7788888888877664 5778999999999999999998763110 12222 3
Q ss_pred EEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEE
Q 036714 193 WVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLV 270 (932)
Q Consensus 193 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 270 (932)
++..+....... .+++.+.+... .. .+++-++|+|++... .....+...+......+.+|
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~----------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYA----------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcC----------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 333221111111 12222221110 01 234558899998653 22333333333223456666
Q ss_pred EEeCCcc-cccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 271 VTTRSVG-ICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 271 vTTR~~~-v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
++|.+.. +..... ...+++.+++.++....+...+..... .-..+.+..+++.++|.|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 6765432 222111 223888999999998888876643322 1124678889999999987665443
No 99
>PRK05642 DNA replication initiation factor; Validated
Probab=98.04 E-value=7e-05 Score=77.22 Aligned_cols=150 Identities=17% Similarity=0.274 Sum_probs=87.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAK 237 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 237 (932)
..+.|+|..|+|||+|++.+++.... ....++|++..+ +... .....+.+. +
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~~~~------~~~~------------------~~~~~~~~~-~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLPLAE------LLDR------------------GPELLDNLE-Q 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEeeHHH------HHhh------------------hHHHHHhhh-h
Confidence 67899999999999999999987632 123466665322 2110 011222221 1
Q ss_pred CeEEEEEeccccc---ccccc-ccCCCCC-CCCCcEEEEEeCCc---------ccccccccee-EeccCCCHHHHHHHHH
Q 036714 238 EKFVLILDDMWEA---FRLEE-VGIPEPS-EENGCKLVVTTRSV---------GICRSMGCKE-VRVQPLSNEEALNLFL 302 (932)
Q Consensus 238 kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~-~~l~~L~~~~~~~lf~ 302 (932)
- =+||+||+... ..|+. +...+.. ...|..||+|++.. ++...+.... +++++++.++-...++
T Consensus 98 ~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 1 26789999632 23332 2222211 13466788888752 1122233334 8999999999999998
Q ss_pred HhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHh
Q 036714 303 DKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAG 339 (932)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 339 (932)
+++..... .-.+++..-|++++.|..-.+..+-.
T Consensus 177 ~ka~~~~~---~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 177 LRASRRGL---HLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 65533221 12246778888888887666554433
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=5.4e-05 Score=86.63 Aligned_cols=180 Identities=13% Similarity=0.163 Sum_probs=105.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 194 (932)
.++||. +..++.|.+++..+.+ ..+.++|+.|+||||+|+.+++...-.. +.+.-++.+
T Consensus 16 ~divGq--~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQ--APVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCC--HHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 678998 6678889999987765 4578999999999999999998763210 112223333
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
..+....+.++ +++++.+.. .-..++.-++|+|+|+.. .....+...+......+++|++
T Consensus 94 daas~~~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred cccccCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 33322233322 222222111 011356678999999863 2333333333322345666665
Q ss_pred eCC-cccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 273 TRS-VGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 273 TR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
|.+ ..+..... +..+++.+++.++....+.+.+..... ....+....|++.++|.+.-+..
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 543 33322111 122889999999988877766543322 11245577889999998865443
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=5.8e-05 Score=84.47 Aligned_cols=198 Identities=13% Similarity=0.159 Sum_probs=105.6
Q ss_pred cccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEE-ECCccCHHHHHHHHH
Q 036714 133 MATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT-VSQPLYLIKLQTEIA 210 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~ 210 (932)
-.+++|. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++...-. ...+...|.. +..+.+.=...+.+.
T Consensus 15 ~~eiiGq--~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~-~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 15 FADITAQ--EHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred HhhccCh--HHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC-CCcCcccccccCCCCCCCCHHHHHHh
Confidence 3688997 6677888888887775 458899999999999999999887321 1110000000 000000000001110
Q ss_pred HHHhccc---cc-cchHHHHHHHHHHHH----hcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEe-CCcccc
Q 036714 211 TALKQSL---LE-NEDKVRRAGELLGML----KAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTT-RSVGIC 279 (932)
Q Consensus 211 ~~l~~~~---~~-~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~ 279 (932)
..-..+. .. .....+.+..+...+ ..+++-++|+|++... ..++.+...+....+.+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 0000000 00 000011122222222 1245668899998753 23444443443334466666555 433333
Q ss_pred cccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 280 RSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 280 ~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
.... +..+++.+++.++....+...+..... .-..+.+..|++.++|.+--+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2221 112899999999998888876643221 22356788999999998864443
No 102
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.01 E-value=6.7e-05 Score=76.36 Aligned_cols=159 Identities=21% Similarity=0.274 Sum_probs=90.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
...+.|+|..|+|||.|.+++++....... -..+++++ ..++...+...+... ........+ +
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~-~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRL-R 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHH-C
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeec------HHHHHHHHHHHHHcc---------cchhhhhhh-h
Confidence 456899999999999999999998754333 23456664 445555555555431 112222333 2
Q ss_pred CCeEEEEEecccccc---cccc-ccCCCC-CCCCCcEEEEEeCCc-c--------cccccccee-EeccCCCHHHHHHHH
Q 036714 237 KEKFVLILDDMWEAF---RLEE-VGIPEP-SEENGCKLVVTTRSV-G--------ICRSMGCKE-VRVQPLSNEEALNLF 301 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~---~~~~-l~~~~~-~~~~gs~iivTTR~~-~--------v~~~~~~~~-~~l~~L~~~~~~~lf 301 (932)
.-=+|++||++... .|++ +...+. ....|.+||+|++.. . +...+.... +++++.+.++-..++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 34578999997532 1221 111111 013466899999652 1 122233333 899999999999999
Q ss_pred HHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 302 LDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
.+.+...... -.+++++-|++.+.+..-.+..
T Consensus 176 ~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 176 QKKAKERGIE---LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHH
Confidence 9877544321 2356677777777665554443
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=7.7e-05 Score=84.33 Aligned_cols=187 Identities=14% Similarity=0.169 Sum_probs=108.1
Q ss_pred ccccchHHHHHHHHHHhcCCC--eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 136 LAGEKTKKVVEEIWEDLMGDK--VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 136 ~vGr~~~~~~~~l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
++|..-+........+....+ ..-+.|+|..|+|||+|++++++...... .-..+++++ ..++...+...+
T Consensus 118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~------~~~f~~~~~~~l 190 (450)
T PRK14087 118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMS------GDEFARKAVDIL 190 (450)
T ss_pred cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEE------HHHHHHHHHHHH
Confidence 456532223333334433322 35589999999999999999999763222 223445553 345666666665
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc---c-cccccCCCCC-CCCCcEEEEEeCCc---------ccc
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF---R-LEEVGIPEPS-EENGCKLVVTTRSV---------GIC 279 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTTR~~---------~v~ 279 (932)
.... .......+.+ + +.-+||+||+.... . .+.+...+.. ...|..||+|+... .+.
T Consensus 191 ~~~~-------~~~~~~~~~~-~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 191 QKTH-------KEIEQFKNEI-C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred HHhh-------hHHHHHHHHh-c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 4310 1122232333 2 34588999996431 1 1222221110 13344688887642 222
Q ss_pred cccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHh
Q 036714 280 RSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAG 339 (932)
Q Consensus 280 ~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 339 (932)
..+...- +.+++++.++-.+++.+++...... ..-.+++..-|++.++|.|..+.-+..
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 2333333 7899999999999999887543210 123467889999999999988766553
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00013 Score=81.36 Aligned_cols=179 Identities=8% Similarity=0.180 Sum_probs=100.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhc-----cCCCcEE-EEEEECCccCHHHH
Q 036714 133 MATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKE-----TNKFNVV-IWVTVSQPLYLIKL 205 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~~s~~~~~~~~ 205 (932)
-.+++|. +...+.+.+.+..+.. +.+.++|++|+||||+|+.+.+..... ...|... +.+......+...+
T Consensus 16 ~~~iig~--~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 93 (367)
T PRK14970 16 FDDVVGQ--SHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI 93 (367)
T ss_pred HHhcCCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence 3678998 6678888888877664 588899999999999999998876321 0112111 11111111111111
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEe-CCccccccc
Q 036714 206 QTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTT-RSVGICRSM 282 (932)
Q Consensus 206 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT-R~~~v~~~~ 282 (932)
.++++.+... .. .+++-++|+|++... ..+..+...+......+.+|++| ....+....
T Consensus 94 -~~l~~~~~~~----------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 94 -RNLIDQVRIP----------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred -HHHHHHHhhc----------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 1222111100 01 234557999998653 22333322222223344555555 333333221
Q ss_pred c--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 283 G--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 283 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
. ...++..+++.++....+.+.+..... .-..+.+..+++.++|.+-.+
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~---~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGI---KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 1 122899999999998888876644322 122467888889999876543
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=9.4e-05 Score=85.74 Aligned_cols=177 Identities=14% Similarity=0.214 Sum_probs=105.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccC-----------------------CCc
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN-----------------------KFN 189 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------------~f~ 189 (932)
.++||. +..++.|.+++..+++ ..+.++|+.|+||||+|+.+++...-... .+.
T Consensus 16 ~dviGQ--e~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 16 SEMVGQ--EHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 678997 6688888888887775 66789999999999999999877631100 011
Q ss_pred EEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----hcCCeEEEEEeccccc--cccccccCCCCCC
Q 036714 190 VVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGML----KAKEKFVLILDDMWEA--FRLEEVGIPEPSE 263 (932)
Q Consensus 190 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~ 263 (932)
-+++++......++ .+.+++... ..++.-++|+|+|+.. .....+...+...
T Consensus 94 D~~eldaas~~~Vd----------------------~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP 151 (618)
T PRK14951 94 DYTELDAASNRGVD----------------------EVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151 (618)
T ss_pred ceeecCcccccCHH----------------------HHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC
Confidence 12222221111111 122222211 1245568899999863 3344444444333
Q ss_pred CCCcEEEEEeCC-ccccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 264 ENGCKLVVTTRS-VGICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 264 ~~gs~iivTTR~-~~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
...+++|++|.+ ..+.... .+..+++.+++.++....+.+.+..... ....+....|++.++|.+.-+..+
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 345566655543 3332211 1233999999999999999887654332 123466788999999987555443
No 106
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=2e-05 Score=85.42 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=50.0
Q ss_pred ccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-ChhccccCcEeecccC-CCcccccccccCCCCCEE
Q 036714 538 VYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEET-GIEEVPEGMEMLENLSHL 615 (932)
Q Consensus 538 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L 615 (932)
..+.+++.|++++|.++.+|. -..+|+.|.+++|..++.+| .+ ..+|++|++++| .+..+|.. |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceE
Confidence 446778888888888888772 23468888888888887777 34 257788888877 66666643 5555
Q ss_pred eCCCCC
Q 036714 616 YLSSPR 621 (932)
Q Consensus 616 ~l~~~~ 621 (932)
++.++.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 555443
No 107
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.98 E-value=2.2e-05 Score=84.64 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=63.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc--cCHHHHHHHHHHHHhccccccchHH-----HHH-H
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LYLIKLQTEIATALKQSLLENEDKV-----RRA-G 228 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~-~ 228 (932)
-..++|+|++|+|||||++.+++... ..+|+..+|+.+.+. ..+.++++.+...+-....+..... ..+ .
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 47799999999999999999999873 347999999998865 6888999888543322221211111 111 1
Q ss_pred HHHHHHhcCCeEEEEEecccc
Q 036714 229 ELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 229 ~l~~~l~~~kr~LlVlDdv~~ 249 (932)
........+++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 111222368999999999975
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.0001 Score=85.11 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=103.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 194 (932)
.+++|. +..++.+..++..+++ ..+.++|+.|+||||+|+.+++...-.. +.|.-++++
T Consensus 16 ~divGq--~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQ--EHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 678998 6677888888887765 4568999999999999999998763110 011122333
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivT 272 (932)
..+....+..+ +++.+.... .-..+++-++|+|+++... ....+...+......+.+|++
T Consensus 94 ~~~~~~~vd~i-r~l~~~~~~-----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 94 DAASNTQVDAM-RELLDNAQY-----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred eccccCCHHHH-HHHHHHHhh-----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 22222122211 122211110 0013566799999997532 233333333322345556655
Q ss_pred eCC-cccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 273 TRS-VGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 273 TR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
|.+ +.+..... +..+++.+++.++....+.+.+..... ....+....|++.++|.+.-+
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 543 33332111 222899999999999888876643322 123456788999999987533
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=7.8e-05 Score=85.25 Aligned_cols=177 Identities=14% Similarity=0.138 Sum_probs=99.5
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccC-C-----------------CcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-K-----------------FNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv 194 (932)
..++|+ +..++.+.+++..+. .+.+.++|+.|+||||+|+.+++....... . ...++++
T Consensus 16 ~dIIGQ--e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI 93 (605)
T PRK05896 16 KQIIGQ--ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL 93 (605)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence 688998 667888888887665 457889999999999999999988631110 0 0012222
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
..+....+.++ +++.+.+.. ... .+++-++|+|+++.. ..+..+...+......+.+|++
T Consensus 94 daas~igVd~I-ReIi~~~~~----------------~P~-~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~ 155 (605)
T PRK05896 94 DAASNNGVDEI-RNIIDNINY----------------LPT-TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFA 155 (605)
T ss_pred ccccccCHHHH-HHHHHHHHh----------------chh-hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEE
Confidence 22111111111 111111100 001 123446999999753 2333333333222334555554
Q ss_pred e-CCccccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHH
Q 036714 273 T-RSVGICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLA 333 (932)
Q Consensus 273 T-R~~~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 333 (932)
| ....+.... .+..+++.+++.++....+.+.+....... ..+.+..+++.++|.+.-
T Consensus 156 Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~ 216 (605)
T PRK05896 156 TTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRD 216 (605)
T ss_pred CCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHH
Confidence 4 333332211 122389999999999988888664332111 245678899999997653
No 110
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.93 E-value=8.4e-05 Score=76.69 Aligned_cols=172 Identities=12% Similarity=0.184 Sum_probs=95.2
Q ss_pred ccccccchHHHHHHHHHHhcC-CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
..|++...+.....+.++... .....+.|+|..|+|||+||+.+++.... ... ...+++..... ..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~~-~~~~i~~~~~~------~~---- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GGR-NARYLDAASPL------LA---- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCC-cEEEEehHHhH------HH----
Confidence 455532223445555555442 33567899999999999999999997632 222 34444432211 00
Q ss_pred HhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc--cccccCCCCC-CCCCc-EEEEEeCCccccc--------
Q 036714 213 LKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR--LEEVGIPEPS-EENGC-KLVVTTRSVGICR-------- 280 (932)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs-~iivTTR~~~v~~-------- 280 (932)
+ . . ....-+||+||+..... .+.+...+.. ...+. .||+|++......
T Consensus 85 ~------------------~-~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 85 F------------------D-F-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred H------------------h-h-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 0 0 1 11234788999965321 1122212211 12333 4666666432111
Q ss_pred ccc-ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhh
Q 036714 281 SMG-CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCM 341 (932)
Q Consensus 281 ~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 341 (932)
.+. ...++++++++++-..++.+.+..... .-.+++...+++.+.|.+..+..+...+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222 233899999998877777664432221 2235677888889999998877666554
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.92 E-value=7.8e-05 Score=82.72 Aligned_cols=170 Identities=16% Similarity=0.223 Sum_probs=94.4
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
..+.|. ++.++++.+.+. . ...+-|.++|++|+|||++|+++++... ..| +.+..
T Consensus 122 ~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~---~~~-----~~v~~-- 189 (364)
T TIGR01242 122 EDIGGL--EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATF-----IRVVG-- 189 (364)
T ss_pred HHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC---CCE-----Eecch--
Confidence 568887 556666665542 1 1245689999999999999999999762 222 22211
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------------ccccccCCCC--C
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------------RLEEVGIPEP--S 262 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~ 262 (932)
..+.... ++ .........++......+.+|++|+++... .+..+...+. .
T Consensus 190 --~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 11 111122333333334567899999987421 0111111111 1
Q ss_pred CCCCcEEEEEeCCccc-----ccccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 263 EENGCKLVVTTRSVGI-----CRSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 263 ~~~gs~iivTTR~~~v-----~~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
...+.+||.||+..+. .+...... +.++..+.++..++|..++..... .+. .....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l--~~~--~~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL--AED--VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC--Ccc--CCHHHHHHHcCCCC
Confidence 1245678888875322 22112223 889999999999999987654322 111 12466777777764
No 112
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.90 E-value=0.00012 Score=77.27 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=69.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
..-+.++|++|+||||+|+.+++..... ..-....++.++.. ++... ..+ ........++...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~----~l~~~---~~g-------~~~~~~~~~~~~a-- 104 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA----DLVGE---YIG-------HTAQKTREVIKKA-- 104 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH----Hhhhh---hcc-------chHHHHHHHHHhc--
Confidence 4567899999999999999999875321 11111123333221 11111 000 0111222233222
Q ss_pred CCeEEEEEeccccc----------cccccccCCCCCCCCCcEEEEEeCCccc----------cccccceeEeccCCCHHH
Q 036714 237 KEKFVLILDDMWEA----------FRLEEVGIPEPSEENGCKLVVTTRSVGI----------CRSMGCKEVRVQPLSNEE 296 (932)
Q Consensus 237 ~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTTR~~~v----------~~~~~~~~~~l~~L~~~~ 296 (932)
..-+|++|++... +.++.+...+........+|+++...+. ...+ ...+++++++.++
T Consensus 105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~e 182 (261)
T TIGR02881 105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEE 182 (261)
T ss_pred -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHH
Confidence 2348899999742 1223333333322233345555543322 1222 1228899999999
Q ss_pred HHHHHHHhhCCC
Q 036714 297 ALNLFLDKVGSS 308 (932)
Q Consensus 297 ~~~lf~~~~~~~ 308 (932)
-.+++.+.+...
T Consensus 183 l~~Il~~~~~~~ 194 (261)
T TIGR02881 183 LMEIAERMVKER 194 (261)
T ss_pred HHHHHHHHHHHc
Confidence 999998876543
No 113
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=1.7e-06 Score=97.81 Aligned_cols=122 Identities=28% Similarity=0.388 Sum_probs=79.9
Q ss_pred CCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCCChhccccCcEeecc
Q 036714 516 DILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLE 595 (932)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~ 595 (932)
..+..+.+..| .+..+-.. +..++.|..|++.+|.|..+...+..+.+|++|++++ +.++.+..+..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n-~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQN-LIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchh-hhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccchhhccchhhheec
Confidence 44444445555 33332211 3567777788888887777765567777888888877 446666667777778888888
Q ss_pred cCCCcccccccccCCCCCEEeCCCCCCcccCC-CccCCCCCcceEEee
Q 036714 596 ETGIEEVPEGMEMLENLSHLYLSSPRLKKFPT-GILPRLRNLYKLKLS 642 (932)
Q Consensus 596 ~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~-~~l~~l~~L~~L~l~ 642 (932)
+|.|..++ .+..+++|+.+++++|.+..+.. . +..+.+|+.+++.
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLG 194 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhcc
Confidence 88777663 45557777888888777766654 2 2556666666666
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00044 Score=79.70 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=106.8
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccC--C----------------CcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN--K----------------FNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~----------------f~~~~wv 194 (932)
.+++|. +..++.|...+..+. ...+.++|+.|+||||+|+.+++....... . ..-++++
T Consensus 16 ~dIiGQ--e~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 16 AEVAGQ--ETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred HHhcCC--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 678997 567777888887766 577889999999999999999988732100 0 0002233
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
.......+..+ +.|.+.+. ..-..+++-++|+|+++.. .....+...+........+|++
T Consensus 94 d~a~~~~Id~i-R~L~~~~~-----------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILa 155 (624)
T PRK14959 94 DGASNRGIDDA-KRLKEAIG-----------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLA 155 (624)
T ss_pred ecccccCHHHH-HHHHHHHH-----------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEe
Confidence 22111111111 11111110 0011355678999999753 3334443333322234556665
Q ss_pred eCC-cccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc-HHHHHHHhhh
Q 036714 273 TRS-VGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP-LAIVTVAGCM 341 (932)
Q Consensus 273 TR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~~L 341 (932)
|.. ..+..... +..+++.+++.++....+...+..... .-..+.++.|++.++|.+ .|+..+..++
T Consensus 156 Tt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 156 TTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred cCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 544 33332211 223899999999999888876644322 123467888999999965 5666665544
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00024 Score=83.32 Aligned_cols=178 Identities=11% Similarity=0.168 Sum_probs=106.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhh--------------------ccCCCcEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQK--------------------ETNKFNVVI 192 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~ 192 (932)
.+++|. +..++.|..++..+.+ +.+.++|+.|+||||+|+.+++...- ...+|+. .
T Consensus 17 ~~viGq--~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 17 ESVVGQ--EALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 678998 6778889899887765 55789999999999999999987621 1123432 2
Q ss_pred EEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEE
Q 036714 193 WVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLV 270 (932)
Q Consensus 193 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 270 (932)
.+..+....+.++. ++++++... -. .+++-++|+|++... .....+...+.....++.+|
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~----------------P~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIP----------------PQ-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhC----------------cc-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 23333222222222 222221110 01 234568899998763 23444443333223455555
Q ss_pred EEe-CCcccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 271 VTT-RSVGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 271 vTT-R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
++| +...+..... +..+++.+++.++....+.+.+..... ....+.+..|++.++|..--+.
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 544 4444443222 222899999999999888876644322 1224567889999999775443
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00018 Score=86.57 Aligned_cols=177 Identities=12% Similarity=0.106 Sum_probs=103.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc---------------------CCCcEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET---------------------NKFNVV 191 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~~f~~~ 191 (932)
.+++|. +..++.|..++..+++ +.+.++|+.|+||||+|+.+++...-.. .+++ +
T Consensus 15 ~eiiGq--e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v 91 (824)
T PRK07764 15 AEVIGQ--EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-V 91 (824)
T ss_pred HHhcCc--HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-E
Confidence 678998 6678888888887775 4578999999999999999998873111 0111 2
Q ss_pred EEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEE
Q 036714 192 IWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKL 269 (932)
Q Consensus 192 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~i 269 (932)
+++.......+.++ +++.+. ....-..+++-++|||+++.. ...+.|...+......+.+
T Consensus 92 ~eidaas~~~Vd~i-R~l~~~-----------------~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 92 TEIDAASHGGVDDA-RELRER-----------------AFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred EEecccccCCHHHH-HHHHHH-----------------HHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 22322111122222 111111 111111345667899999863 3333443333333345555
Q ss_pred EEEe-CCcccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 270 VVTT-RSVGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 270 ivTT-R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
|++| ....+..-+. +..|++..++.++....+.+.+..... ....+....|++.++|.+..+
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 5555 4344433222 233899999999998888876643322 123456678899999988443
No 117
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.86 E-value=0.00029 Score=73.12 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=116.5
Q ss_pred ccccccch-HHHHHHHHHHhcCC---CeeEEEEEeCCCChHHHHHHHHHHHHhhccCC---CcEEEEEEECCccCHHHHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLYLIKLQ 206 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~ 206 (932)
+..+|-+. .+.++++.+.+..+ ..+-+.|||.+|.|||++++++.+.+....+. --.++.|.....++...+-
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 34555543 45566666666543 46779999999999999999999887432211 1147778888889999999
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc-----c----cccccCCCCCCCCCcEEEEEeCCc-
Q 036714 207 TEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF-----R----LEEVGIPEPSEENGCKLVVTTRSV- 276 (932)
Q Consensus 207 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-----~----~~~l~~~~~~~~~gs~iivTTR~~- 276 (932)
..|+.+++.+................-+..-+--+||+|++.+.- . +..+. .+.+.-.-+-|.|-|++.
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A~ 192 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREAY 192 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHHH
Confidence 999999998875444333322222333333345688999997631 1 11111 112222334566666642
Q ss_pred -------cccccccceeEeccCCCHH-HHHHHHHHh---hCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 277 -------GICRSMGCKEVRVQPLSNE-EALNLFLDK---VGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 277 -------~v~~~~~~~~~~l~~L~~~-~~~~lf~~~---~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
+.++.... +.++.-..+ +...|+... +.-... ..-...++++.|...++|+.=-+..
T Consensus 193 ~al~~D~QLa~RF~~--~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 193 RALRTDPQLASRFEP--FELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHhccCHHHHhccCC--ccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHHHH
Confidence 22222211 555555543 444454332 111111 2234578999999999998754443
No 118
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00037 Score=79.34 Aligned_cols=182 Identities=12% Similarity=0.144 Sum_probs=106.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCee-EEEEEeCCCChHHHHHHHHHHHHhhccC-C----------------Cc-EEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVT-KIGVWGMGGIGKTTIMKEINNRLQKETN-K----------------FN-VVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~----------------f~-~~~wv 194 (932)
.+++|. +...+.+...+..+..+ +..++|+.|+||||+|+.+++..-.... . +. .++.+
T Consensus 14 deiiGq--e~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 14 DELIGQ--ESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 678997 66778888888777754 6689999999999999999987621110 0 00 12222
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVT 272 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 272 (932)
..+....+..+. ++++.... .-..+++-++|+|++... .....+...+......+++|++
T Consensus 92 daas~~gId~IR-elie~~~~-----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 92 DAASNRGIDDIR-ELIEQTKY-----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred ccccccCHHHHH-HHHHHHhh-----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 222111222221 11111100 000245668899999753 2233333333322345666766
Q ss_pred eCCc-cccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 273 TRSV-GICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 273 TR~~-~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
|.+. .+.... .+..+++.+++.++....+.+.+..... .-..+.+..|++.++|.+.-+....
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 6552 222211 1233999999999999888876644322 1234678899999999986555443
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00026 Score=82.79 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=101.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccCCCc---------------EEEEEEE
Q 036714 133 MATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFN---------------VVIWVTV 196 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---------------~~~wv~~ 196 (932)
-..++|. +..++.|..++..+++ +.+.++|+.|+||||+|+.+++..-....... .++++..
T Consensus 17 f~dIiGQ--e~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieida 94 (725)
T PRK07133 17 FDDIVGQ--DHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDA 94 (725)
T ss_pred HHHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEec
Confidence 3678998 6678888888887664 56689999999999999999987521111000 0111111
Q ss_pred CCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----hcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEE
Q 036714 197 SQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGML----KAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLV 270 (932)
Q Consensus 197 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 270 (932)
.....+. .++.+.... ..+++-++|+|++... ..+..+...+......+.+|
T Consensus 95 asn~~vd----------------------~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 95 ASNNGVD----------------------EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred cccCCHH----------------------HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 1111111 111221111 1355668899999753 23444433333223344444
Q ss_pred -EEeCCccccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 271 -VTTRSVGICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 271 -vTTR~~~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
+|++...+.... .+..+++.+++.++....+...+..... ....+.+..|++.++|.+.-+..
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 454444443221 1233999999999998888876533221 11245678899999997754333
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00035 Score=79.05 Aligned_cols=178 Identities=12% Similarity=0.160 Sum_probs=102.6
Q ss_pred cccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc--------------------CCCcEE
Q 036714 133 MATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET--------------------NKFNVV 191 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~ 191 (932)
-.+++|. +..++.+..++..+.+ ..+.++|+.|+||||+|+.+++...... .+++ .
T Consensus 16 ~~diiGq--~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 16 FSEILGQ--DAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred HHHhcCc--HHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 3788998 6678888888887765 6688999999999999999998763210 0112 1
Q ss_pred EEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEE
Q 036714 192 IWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKL 269 (932)
Q Consensus 192 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~i 269 (932)
+++.......+.++ +++.+.+. .... .+++-++|+|++... ...+.+...+......+.+
T Consensus 93 ~~i~g~~~~gid~i-r~i~~~l~----------------~~~~-~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 93 LEIDGASHRGIEDI-RQINETVL----------------FTPS-KSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred EEeeccccCCHHHH-HHHHHHHH----------------hhhh-cCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 12221111111211 11111110 0001 245678899998653 2233333333322345566
Q ss_pred EEEeCC-cccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 270 VVTTRS-VGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 270 ivTTR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
|++|.. ..+..... +..+++.++++++....+.+.+..... .-.++.++.|++.++|.+.-+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 666533 33332221 223899999999998888876543221 123567888999999976433
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00035 Score=80.78 Aligned_cols=181 Identities=13% Similarity=0.118 Sum_probs=103.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCee-EEEEEeCCCChHHHHHHHHHHHHhhccCC--------------------CcEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVT-KIGVWGMGGIGKTTIMKEINNRLQKETNK--------------------FNVVI 192 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--------------------f~~~~ 192 (932)
.+++|. +..++.|..++..+.+. .+.++|+.|+||||+|+.+++...-.... ...++
T Consensus 13 ~eivGq--~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 13 AEVVGQ--EHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 678998 67888899998887754 57899999999999999999876311000 00122
Q ss_pred EEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEE
Q 036714 193 WVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLV 270 (932)
Q Consensus 193 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 270 (932)
.+..+....+..+ ++|.+. ....-..+++-++|+|++... .....+...+........+|
T Consensus 91 eidaas~~gvd~i-Rel~~~-----------------~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fI 152 (584)
T PRK14952 91 ELDAASHGGVDDT-RELRDR-----------------AFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152 (584)
T ss_pred EeccccccCHHHH-HHHHHH-----------------HHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEE
Confidence 2222211122211 111111 100011245668899999752 33344433333223455555
Q ss_pred EEe-CCcccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH-HHHHH
Q 036714 271 VTT-RSVGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL-AIVTV 337 (932)
Q Consensus 271 vTT-R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 337 (932)
++| ....+..... +..+++.+++.++..+.+.+.+..... ....+.+..|++..+|.+. ++..+
T Consensus 153 L~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 153 FATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred EEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544 4444332211 333999999999998888876644322 1234567888999999875 44443
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.80 E-value=0.00016 Score=87.51 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=89.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccC---CCcEEEEEEECCccCHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN---KFNVVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~~~~~~~~~i~ 210 (932)
..++|| +++++++++.|......-+.++|++|+|||++|+.+++......- ..+..+|. + +...+..
T Consensus 182 ~~~igr--~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a--- 251 (731)
T TIGR02639 182 DPLIGR--EDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA--- 251 (731)
T ss_pred CcccCc--HHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh---
Confidence 579999 778889999887766667789999999999999999998632110 11233332 1 1111110
Q ss_pred HHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------ccccccCCCCCCCCC-cEEEEEeCCccc-
Q 036714 211 TALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------RLEEVGIPEPSEENG-CKLVVTTRSVGI- 278 (932)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~g-s~iivTTR~~~v- 278 (932)
. .. -..+....+..++..+...++.+|++|+++... +...+..+.- ..| -++|-+|...+.
T Consensus 252 -~--~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 252 -G--TK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEYK 324 (731)
T ss_pred -h--cc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHHH
Confidence 0 00 012233445555555544568999999987421 1122222221 223 344544443221
Q ss_pred ---------cccccceeEeccCCCHHHHHHHHHHhh
Q 036714 279 ---------CRSMGCKEVRVQPLSNEEALNLFLDKV 305 (932)
Q Consensus 279 ---------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 305 (932)
.+.+ ..+++++++.++..++++...
T Consensus 325 ~~~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRF--QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhC--ceEEeCCCCHHHHHHHHHHHH
Confidence 1212 238999999999999998654
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00032 Score=81.57 Aligned_cols=195 Identities=12% Similarity=0.145 Sum_probs=105.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccCCCc-EEEEEEECCccCHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLYLIKLQTEIAT 211 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~ 211 (932)
.+++|. +..++.|.+++..+++ ..+.++|+.|+||||+|+.+++...-....-. ...+ +.+..-.-.+.|..
T Consensus 24 ~dliGq--~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~ 97 (598)
T PRK09111 24 DDLIGQ--EAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIME 97 (598)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhc
Confidence 679998 6788888888887764 57899999999999999999987631110000 0000 00000001111111
Q ss_pred HHhcccc----ccchHHHHHHHHHHHH----hcCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEEe-CCccccc
Q 036714 212 ALKQSLL----ENEDKVRRAGELLGML----KAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVTT-RSVGICR 280 (932)
Q Consensus 212 ~l~~~~~----~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTT-R~~~v~~ 280 (932)
.-..+.. ......+.+++++... ..+++-++|+|++.... ..+.+...+.....++++|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 1000000 0000011122222111 12345678999997532 2333433333233456666555 3333322
Q ss_pred cc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 281 SM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 281 ~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
.. .+..+++.+++.++....+.+.+..... ....+.+..|++.++|.+.-+...
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 1223899999999999999887654322 123467788999999988665443
No 124
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.0029 Score=64.04 Aligned_cols=171 Identities=19% Similarity=0.224 Sum_probs=95.2
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTE 208 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 208 (932)
.+|+|. ++.++.+.-++. +..+--|.++|++|.||||||.-+++..... + .+.+.+.++
T Consensus 26 ~efiGQ--~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn---~------k~tsGp~le----- 89 (332)
T COG2255 26 DEFIGQ--EKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN---L------KITSGPALE----- 89 (332)
T ss_pred HHhcCh--HHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC---e------Eeccccccc-----
Confidence 789998 445555443332 3457889999999999999999999998321 1 111111100
Q ss_pred HHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc-c--------cccccCCC-CCCCCCc-----------
Q 036714 209 IATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF-R--------LEEVGIPE-PSEENGC----------- 267 (932)
Q Consensus 209 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-~--------~~~l~~~~-~~~~~gs----------- 267 (932)
.......++..+ + ..=++.+|.++... . .+++..-. -..++++
T Consensus 90 --------------K~gDlaaiLt~L-e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 90 --------------KPGDLAAILTNL-E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred --------------ChhhHHHHHhcC-C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 000111111222 1 22344556654310 0 11111000 0112222
Q ss_pred EEEEEeCCcccccccccee---EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHh
Q 036714 268 KLVVTTRSVGICRSMGCKE---VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAG 339 (932)
Q Consensus 268 ~iivTTR~~~v~~~~~~~~---~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 339 (932)
-|=.|||.-.+........ .+++--+.+|-.+...+.+..-+. .-.++.+.+|+++..|-|.-..-+.+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC---CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 3447898766655444333 688888899999999887644322 22356789999999999975544433
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=97.76 E-value=0.0005 Score=72.98 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=70.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAK 237 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 237 (932)
..+.++|++|+||||+|+.+++.... .+.-....|+.++.. ++. ..+... .. ......+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~~----~l~----~~~~g~----~~--~~~~~~l~~a--- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTRD----DLV----GQYIGH----TA--PKTKEVLKKA--- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecHH----HHH----HHHhcc----ch--HHHHHHHHHc---
Confidence 35889999999999999999887522 111111224444421 222 111111 00 1112223322
Q ss_pred CeEEEEEeccccc-----------cccccccCCCCCCCCCcEEEEEeCCccc----------cccccceeEeccCCCHHH
Q 036714 238 EKFVLILDDMWEA-----------FRLEEVGIPEPSEENGCKLVVTTRSVGI----------CRSMGCKEVRVQPLSNEE 296 (932)
Q Consensus 238 kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTTR~~~v----------~~~~~~~~~~l~~L~~~~ 296 (932)
..-+|++|++... +..+.+...+.....+.+||+++....+ .+.+ ...+.+++++.+|
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~~~i~F~~~t~~e 200 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-ANHVDFPDYTPEE 200 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-CceEEcCCcCHHH
Confidence 2348999998642 1122232233333345667777754332 1111 1128899999999
Q ss_pred HHHHHHHhhCC
Q 036714 297 ALNLFLDKVGS 307 (932)
Q Consensus 297 ~~~lf~~~~~~ 307 (932)
..+++...+..
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99988887644
No 126
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.76 E-value=0.00056 Score=77.19 Aligned_cols=179 Identities=18% Similarity=0.258 Sum_probs=100.3
Q ss_pred ccccchHHHHHHHHHHhcCC--CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 136 LAGEKTKKVVEEIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 136 ~vGr~~~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
++|..-......+..+.... ....+.|+|+.|+|||+|++++++..... ..-..+++++. .++..++...+
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~------~~~~~~~~~~~ 185 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSS------EKFTNDFVNAL 185 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEH------HHHHHHHHHHH
Confidence 45653333334444444332 23568999999999999999999987432 21234556642 33444454444
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc---cc-ccccCCCCC-CCCCcEEEEEeCCc---------ccc
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF---RL-EEVGIPEPS-EENGCKLVVTTRSV---------GIC 279 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTTR~~---------~v~ 279 (932)
... . .....+.+ + +.-+|||||+.... .. +.+...+.. ...+..+|+||... .+.
T Consensus 186 ~~~-----~----~~~~~~~~-~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~ 254 (405)
T TIGR00362 186 RNN-----K----MEEFKEKY-R-SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLR 254 (405)
T ss_pred HcC-----C----HHHHHHHH-H-hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhh
Confidence 321 1 11122222 1 23488999997421 11 112111110 12345688887641 122
Q ss_pred cccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 280 RSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 280 ~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
..+.... +.+++.+.++-..++.+.+....... .+++...|++.+.|..-.+.
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 3333333 88999999999999998875543212 35677888888888776543
No 127
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.75 E-value=0.00037 Score=85.00 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=98.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEE-EEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIW-VTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~w-v~~s~~~~~~~~~~~i 209 (932)
..++|| +.++.++++.|......-+.++|++|+||||+|+.+++...... ...+..+| +..+.-.
T Consensus 187 d~~iGr--~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~--------- 255 (852)
T TIGR03345 187 DPVLGR--DDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ--------- 255 (852)
T ss_pred CcccCC--HHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh---------
Confidence 678999 77899999998877767778999999999999999999863210 01222232 3222100
Q ss_pred HHHHhccccccchHHHHHHHHHHHHh-cCCeEEEEEecccccc---------ccccccCCCCCCCCC-cEEEEEeCCccc
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLK-AKEKFVLILDDMWEAF---------RLEEVGIPEPSEENG-CKLVVTTRSVGI 278 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~iivTTR~~~v 278 (932)
.......+...++..++.... .+++.+|++|++.... +...+..+.. ..| -++|-||...+.
T Consensus 256 -----ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 256 -----AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAEY 328 (852)
T ss_pred -----cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHHH
Confidence 000001122233444444443 2468999999986531 1111222222 233 456656654322
Q ss_pred cccc--------cceeEeccCCCHHHHHHHHHHhhCCCC-CCCChhhHHHHHHHHHHcCCC
Q 036714 279 CRSM--------GCKEVRVQPLSNEEALNLFLDKVGSST-LQIPTLDKKIINLVVEECAGL 330 (932)
Q Consensus 279 ~~~~--------~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~i~~~~~G~ 330 (932)
.... .-..+.+++++.+++.++++.....-. .....-..+....+++.+.+.
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 1111 112399999999999999764332111 001112244555666666543
No 128
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00055 Score=79.77 Aligned_cols=195 Identities=13% Similarity=0.184 Sum_probs=101.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEE-ECCccCHHHHHHHHH
Q 036714 133 MATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT-VSQPLYLIKLQTEIA 210 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~ 210 (932)
-.+++|. +..++.|.+++..+.+ ..+.++|+.|+||||+|+.+++...-. ...+.-.|.. +...++.-...+.+.
T Consensus 15 f~eivGQ--e~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~-~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 15 FADITAQ--EHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HHHhcCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC-CcCCccccccccCCCCccCHHHHHHh
Confidence 3789998 6677888888877765 558899999999999999999887321 1110000110 000000001111110
Q ss_pred HHHhccc---cc-cchHHHHHHHHHHHH----hcCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEEe-CCcccc
Q 036714 211 TALKQSL---LE-NEDKVRRAGELLGML----KAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVTT-RSVGIC 279 (932)
Q Consensus 211 ~~l~~~~---~~-~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTT-R~~~v~ 279 (932)
..-..+. .. .....+.+..+...+ ..+++-++|+|+++... ..+.+...+......+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 0000000 00 000011122222222 12445678999987632 2333433333223345555444 434443
Q ss_pred cccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHH
Q 036714 280 RSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLA 333 (932)
Q Consensus 280 ~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 333 (932)
.... +..+++.+++.++....+.+.+..... .-..+.+..|++.++|..--
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMRD 224 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHH
Confidence 2221 223899999999988888876543221 12356788899999996653
No 129
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=9.6e-05 Score=80.23 Aligned_cols=127 Identities=24% Similarity=0.368 Sum_probs=73.2
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCC-CCcccCcccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRT-NIKVLPSSVSDLMNLRSLLL 571 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~L 571 (932)
.+++|+++++.++.+|. + .++|++|.+++|..+..+|..+ ..+|++|++++| .+..+|.+ |+.|++
T Consensus 53 ~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred CCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEEe
Confidence 46678888888887762 2 2468888888887777777644 357888888888 57777764 444444
Q ss_pred cc--ccccCCCCChhccccCcEeecccCC-C--cccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 572 RW--CENLERVPSLAKLLALQYLDLEETG-I--EEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 572 ~~--~~~l~~lp~~~~l~~L~~L~l~~~~-i--~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
++ |..+..+|. +|+.|.+.+++ . ..+|.. -.++|++|++++|....+|.++ . .+|+.|.++
T Consensus 120 ~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~L-P--~SLk~L~ls 185 (426)
T PRK15386 120 KGSATDSIKNVPN-----GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKL-P--ESLQSITLH 185 (426)
T ss_pred CCCCCcccccCcc-----hHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccc-c--ccCcEEEec
Confidence 43 233455551 24444443221 1 111110 1135677777666654444432 2 456666655
No 130
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.73 E-value=0.00013 Score=77.47 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=69.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCC
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKE 238 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 238 (932)
-+.++|++|+|||++|+.+++..... +.....-|+.++. .++ ...+... .. ......++.. .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~-g~~~~~~~v~v~~----~~l----~~~~~g~---~~---~~~~~~~~~a---~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL-GYVRKGHLVSVTR----DDL----VGQYIGH---TA---PKTKEILKRA---M 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc-CCcccceEEEecH----HHH----hHhhccc---ch---HHHHHHHHHc---c
Confidence 58899999999999999888876321 2221123444442 122 1111111 00 1122333322 2
Q ss_pred eEEEEEeccccc-----------cccccccCCCCCCCCCcEEEEEeCCccccccc--c-------ceeEeccCCCHHHHH
Q 036714 239 KFVLILDDMWEA-----------FRLEEVGIPEPSEENGCKLVVTTRSVGICRSM--G-------CKEVRVQPLSNEEAL 298 (932)
Q Consensus 239 r~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~--~-------~~~~~l~~L~~~~~~ 298 (932)
.-+|+||++... ...+.+...+.....+.+||+++......... . ...+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368899998632 11222322333233455666666532221110 1 123899999999999
Q ss_pred HHHHHhhCC
Q 036714 299 NLFLDKVGS 307 (932)
Q Consensus 299 ~lf~~~~~~ 307 (932)
.++...+..
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 998887643
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00056 Score=80.44 Aligned_cols=194 Identities=14% Similarity=0.177 Sum_probs=106.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHH
Q 036714 133 MATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIAT 211 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 211 (932)
-.+++|. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++....... .. ....++.-...+.|..
T Consensus 15 ~~eiiGq--~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~-~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 15 FAELVGQ--EHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTN-DP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHHhcCC--HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCC-CC------CCCCCccCHHHHHHhc
Confidence 3689998 6678888888877664 56789999999999999999987621100 00 0001111112222222
Q ss_pred HHhcccc---c-cchHHHHHHHHHHHH----hcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCC-ccccc
Q 036714 212 ALKQSLL---E-NEDKVRRAGELLGML----KAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRS-VGICR 280 (932)
Q Consensus 212 ~l~~~~~---~-~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~ 280 (932)
....+.. . .....+.+..+...+ ..+++-++|+|++... ...+.+...+......+.+|++|.+ ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 1111100 0 000011111221111 1245678999999753 3344443333322345566665543 33322
Q ss_pred ccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 281 SMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 281 ~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
... +..+++..++.++....+...+..... .-..+.+..|++.++|.+..+....
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 111 122888999999988888877654322 1234678899999999886554443
No 132
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00064 Score=77.49 Aligned_cols=181 Identities=13% Similarity=0.129 Sum_probs=102.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 194 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 194 (932)
..++|. +.....+..++..+.+ +.+.++|+.|+||||+|+.++........ .+..++++
T Consensus 16 ~diiGq--~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQ--EIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 678897 6678888888887664 55678999999999999999987531000 11112222
Q ss_pred EECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-hcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEE
Q 036714 195 TVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGML-KAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVV 271 (932)
Q Consensus 195 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 271 (932)
..+....+..+ +.|.+ ..... ..+++-++|+|+++.. ...+.+...+........+|+
T Consensus 94 daas~~gvd~i-r~I~~------------------~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 94 DAASNRGIDDI-RALRD------------------AVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred eCccCCCHHHH-HHHHH------------------HHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 22111111111 11111 11110 1356779999998753 223333333332233445555
Q ss_pred Ee-CCccccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 272 TT-RSVGICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 272 TT-R~~~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
+| +...+.... .+..+++.+++.++....+.+.+..... ....+.+..|++.++|.+..+....
T Consensus 155 ~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 155 CTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 333332211 1223899999999988888876543322 1234667788899999776554443
No 133
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.71 E-value=3.3e-06 Score=86.93 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=42.2
Q ss_pred CCccEEEEecCCCCcc--cccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCc
Q 036714 752 HDLKVLRFDSCKNLKN--LFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLR 829 (932)
Q Consensus 752 ~~L~~L~L~~c~~l~~--l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 829 (932)
++|+.|+|.++..-.. ..-...++.+++|++|++++|.- +.-.... -.... -..+|+|+.|.+.++.
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll-~~~Ga~a----~~~al------~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL-ENEGAIA----FVDAL------KESAPSLEVLELAGNE 281 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc-ccccHHH----HHHHH------hccCCCCceeccCcch
Confidence 6666666666532221 11112345566777777777632 2111100 00000 1246777777777763
Q ss_pred ccccccC--CCCcccCCCccEEEecccC
Q 036714 830 EFKSFCS--NNGVLVCNSLQEIEVHRCP 855 (932)
Q Consensus 830 ~L~~i~~--~~~~~~~p~L~~L~i~~C~ 855 (932)
.-.+-.. ......-|.|++|++.+|.
T Consensus 282 It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 282 ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 2211000 0011124677777777763
No 134
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=2.5e-06 Score=95.31 Aligned_cols=126 Identities=25% Similarity=0.260 Sum_probs=85.8
Q ss_pred ceeEEEccCCCCcccCccccccccccccccccccccCCCCChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCC
Q 036714 542 GLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSP 620 (932)
Q Consensus 542 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 620 (932)
.|.+.+.++|.+..+-+++.-++.|+.|+|++|+ +.....+..|++|++|||+.|.+..+|.. ...++ |+.|++++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 4666677777777666677777888888888854 44444677788888888888877777642 22333 888888888
Q ss_pred CCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecCh
Q 036714 621 RLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 621 ~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
.++.+-. +.+|++|+.|+++++--.....+.-+..| ..|+.|.+.+|.+
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence 7776643 57888888888874433333445566666 7777777776644
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=2.9e-05 Score=55.97 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=32.3
Q ss_pred ccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCC
Q 036714 587 LALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPT 627 (932)
Q Consensus 587 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~ 627 (932)
++|++|++++|+|+.+|+.+++|++|+.|++++|.+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 36888888888888888878889999999998888776653
No 136
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=2.1e-05 Score=92.87 Aligned_cols=130 Identities=23% Similarity=0.251 Sum_probs=90.2
Q ss_pred cccceeecccccc--cccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccc
Q 036714 492 ANLERVSLMMNDI--EEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSL 569 (932)
Q Consensus 492 ~~~~~l~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L 569 (932)
.+++++++.+... ...+......+|.|++|.+.+-.....--.....++++|+.||+|+++++.+ ..++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 3577777766532 1122334557899999999875222111123457899999999999999988 679999999999
Q ss_pred ccccccccCCCC---ChhccccCcEeecccCCCccccc-------ccccCCCCCEEeCCCCCCc
Q 036714 570 LLRWCENLERVP---SLAKLLALQYLDLEETGIEEVPE-------GMEMLENLSHLYLSSPRLK 623 (932)
Q Consensus 570 ~L~~~~~l~~lp---~~~~l~~L~~L~l~~~~i~~lp~-------~~~~l~~L~~L~l~~~~l~ 623 (932)
.+++-. +..-+ .+-+|++|++||+|......-+. .-..|++|+.||.+++.+.
T Consensus 201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 998733 33322 47789999999999874333321 1134889999999987644
No 137
>PRK06620 hypothetical protein; Validated
Probab=97.69 E-value=0.00026 Score=71.66 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=89.1
Q ss_pred ccccccchHHHHHHHHHHhcCC--Ce--eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGD--KV--TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~--~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
.-++|..-+.....+.++-... .. +.+.|+|++|+|||+|++.+++... . .++. ..+.
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~-----~~~~--~~~~-------- 78 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN---A-----YIIK--DIFF-------- 78 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC---C-----EEcc--hhhh--------
Confidence 4456653344455555554321 12 6699999999999999999877641 1 1111 0000
Q ss_pred HHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc--cccccCCCCCCCCCcEEEEEeCCccc-------cc
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR--LEEVGIPEPSEENGCKLVVTTRSVGI-------CR 280 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iivTTR~~~v-------~~ 280 (932)
.. . .+ + ..-++++||++...+ +-.+...+. ..|..||+|++.... ..
T Consensus 79 -----------~~------~---~~-~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~S 134 (214)
T PRK06620 79 -----------NE------E---IL-E-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSS 134 (214)
T ss_pred -----------ch------h---HH-h-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHH
Confidence 00 0 01 1 235788999974322 111111111 346689999885322 22
Q ss_pred ccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 281 SMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 281 ~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
.+.... +++++++.++-..++.+.+..... .-.+++..-|++.+.|.--.+.
T Consensus 135 Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l---~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 135 RIKSVLSILLNSPDDELIKILIFKHFSISSV---TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHhCCceEeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHH
Confidence 233333 899999999988888877653221 1235677778888877655443
No 138
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.0006 Score=77.14 Aligned_cols=180 Identities=15% Similarity=0.208 Sum_probs=101.1
Q ss_pred ccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHh
Q 036714 136 LAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALK 214 (932)
Q Consensus 136 ~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 214 (932)
++|..-........++....+ ..-+.|+|++|+|||+||+++++..... ..-..++|++. .++..++...+.
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~ 180 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMK 180 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHh
Confidence 346433333444444444322 3459999999999999999999987422 11235666653 345555555543
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc---cc-ccccCCCCC-CCCCcEEEEEeCC-c--------cccc
Q 036714 215 QSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF---RL-EEVGIPEPS-EENGCKLVVTTRS-V--------GICR 280 (932)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTTR~-~--------~v~~ 280 (932)
.. . .......+ ..+.-+|++||+.... .. +.+...+.. ...|..||+||.. . .+..
T Consensus 181 ~~-----~----~~~f~~~~-~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S 250 (440)
T PRK14088 181 EG-----K----LNEFREKY-RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_pred cc-----c----HHHHHHHH-HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh
Confidence 21 1 11122222 2235589999997421 11 122111110 1234468888852 1 1122
Q ss_pred ccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 281 SMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 281 ~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
.+.... +++++.+.++-..++++.+....... .+++...|++.+.|..-.+.
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHhccccCHHHHH
Confidence 233333 78999999999999998875432222 35678888888887655444
No 139
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=4.2e-06 Score=93.50 Aligned_cols=105 Identities=24% Similarity=0.278 Sum_probs=81.5
Q ss_pred cccccccccccccCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 565 NLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 565 ~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
.|.+.+.++ +.+..+. ++.-++.|+.|||++|.+..+. .+..|++|+||||++|.+..+|.---..+. |+.|.+++
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 355556664 4466666 6888899999999999999885 788999999999999999988863223444 99999982
Q ss_pred CCchhhhcHHHHHHHHhccceeEEEecChhhhh
Q 036714 644 GNEALRETVEEAARLSDRLDTFEGIFSTLNDFN 676 (932)
Q Consensus 644 ~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~ 676 (932)
..-..+.++.+| ++|+.|++++|-+.+..
T Consensus 242 ---N~l~tL~gie~L-ksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 242 ---NALTTLRGIENL-KSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred ---cHHHhhhhHHhh-hhhhccchhHhhhhcch
Confidence 234556788899 99999999998766543
No 140
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.0008 Score=78.00 Aligned_cols=180 Identities=15% Similarity=0.186 Sum_probs=104.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhcc-------------------CCCcEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIW 193 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~w 193 (932)
.+++|. +..++.+..++..+.. +.+.++|+.|+||||+|+.+++...... .+++ +.+
T Consensus 16 ~diiGq--e~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~ 92 (563)
T PRK06647 16 NSLEGQ--DFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIE 92 (563)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEE
Confidence 689998 6678888888887664 5688999999999999999999863110 0111 112
Q ss_pred EEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEE
Q 036714 194 VTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVV 271 (932)
Q Consensus 194 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 271 (932)
+.......+.++. ++.+. +...-..+++-++|+|++... ..++.+...+......+.+|+
T Consensus 93 idgas~~~vddIr-~l~e~-----------------~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 93 IDGASNTSVQDVR-QIKEE-----------------IMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred ecCcccCCHHHHH-HHHHH-----------------HHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEE
Confidence 2111111111111 11110 000001345668899998753 334444444443334556665
Q ss_pred EeCC-cccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 272 TTRS-VGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 272 TTR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
+|.. ..+..... +..++..+++.++....+.+.+..... +-..+.+..|++.++|.+..+...
T Consensus 155 ~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 155 ATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5543 33322111 223889999999988888876643322 223567788999999988654433
No 141
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.66 E-value=0.00031 Score=71.64 Aligned_cols=185 Identities=16% Similarity=0.229 Sum_probs=111.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEE-EEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW-VTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~~ 212 (932)
.+++|. +.....+.+.+.....++...+|++|.|||+-|+.++..... .+-|.+++- .++|......-+-..+
T Consensus 36 de~~gQ--e~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderGisvvr~Ki--- 109 (346)
T KOG0989|consen 36 DELAGQ--EHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERGISVVREKI--- 109 (346)
T ss_pred Hhhcch--HHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhcccccccccchhhhh---
Confidence 678887 667777888887777899999999999999999999988732 344554333 3444433322110000
Q ss_pred HhccccccchHHHHHHHHHHHH---h--cCCe-EEEEEecccc--ccccccccCCCCCCCCCcEEEEEeCC-cccccccc
Q 036714 213 LKQSLLENEDKVRRAGELLGML---K--AKEK-FVLILDDMWE--AFRLEEVGIPEPSEENGCKLVVTTRS-VGICRSMG 283 (932)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~~l---~--~~kr-~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~~ 283 (932)
....++.... . .-++ -.+|||+++. .+.|..+..........++.|+.+.. ..+-....
T Consensus 110 ------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 110 ------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0000000000 0 1123 4889999986 45677666555544555665544443 33322222
Q ss_pred --ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHh
Q 036714 284 --CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAG 339 (932)
Q Consensus 284 --~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 339 (932)
+.+|+..+|.+++...-++..+..++. +-..+..+.|++.++|.-.-..++..
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v---~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGV---DIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 223899999999999888887755433 22456788899999986544444333
No 142
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.66 E-value=0.0005 Score=76.61 Aligned_cols=170 Identities=15% Similarity=0.235 Sum_probs=92.6
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
..+.|+ ++.++++.+.+. . ...+-|.++|++|+|||++|+++++... .. |+.++.
T Consensus 131 ~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~---~~-----~i~v~~-- 198 (389)
T PRK03992 131 EDIGGL--EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---AT-----FIRVVG-- 198 (389)
T ss_pred HHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC---CC-----EEEeeh--
Confidence 567888 556666655442 1 2356799999999999999999999762 12 222221
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc------------c----cccccCCCC--C
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF------------R----LEEVGIPEP--S 262 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~ 262 (932)
.++. .... .........++.......+.+|+|||++... . +..+...+. .
T Consensus 199 --~~l~----~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 --SELV----QKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --HHHh----Hhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 1110 0111223333333334567899999997421 0 111111111 1
Q ss_pred CCCCcEEEEEeCCccccc-cc----ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 263 EENGCKLVVTTRSVGICR-SM----GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 263 ~~~gs~iivTTR~~~v~~-~~----~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
...+..||.||...+... .. .-.. ++++..+.++-.++|+.++......... ....+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV----DLEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCCC
Confidence 123556777776543222 11 1122 8999999999999999876543221111 2455666776654
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.65 E-value=0.00027 Score=77.79 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=69.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
..+++. +...+.+...+.. .+.|.++|++|+|||++|+++++... ....++.+.||.++..++..+++..+.-.
T Consensus 175 ~d~~i~--e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~-~~~~~~~v~~VtFHpsySYeDFI~G~rP~- 248 (459)
T PRK11331 175 NDLFIP--ETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLT-GEKAPQRVNMVQFHQSYSYEDFIQGYRPN- 248 (459)
T ss_pred hcccCC--HHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhc-CCcccceeeEEeecccccHHHHhcccCCC-
Confidence 445665 6677888888765 36788899999999999999999873 33578889999999988877665322100
Q ss_pred hccccccchHHHHHHHHHHHHh--cCCeEEEEEeccccc
Q 036714 214 KQSLLENEDKVRRAGELLGMLK--AKEKFVLILDDMWEA 250 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 250 (932)
+......... ..+.++... .++++++|+|++...
T Consensus 249 ~vgy~~~~G~---f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 GVGFRRKDGI---FYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCeEecCch---HHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000000111 111111111 246899999999753
No 144
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.0038 Score=67.58 Aligned_cols=193 Identities=16% Similarity=0.246 Sum_probs=113.1
Q ss_pred CcccccccchHHHHHHHHHHhc----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHH
Q 036714 132 TMATLAGEKTKKVVEEIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQT 207 (932)
Q Consensus 132 ~~~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 207 (932)
++..++|| +.++..+.++.. ....+-+-|.|-+|.|||.+...++.+....... -.++++.+..-....++..
T Consensus 148 ~p~~l~gR--e~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGR--ELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccch--HHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHH
Confidence 34678999 667777777664 4467899999999999999999999987432222 2456776665556667777
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHhcCC-eEEEEEecccccc-----ccccccCCCCCCCCCcEEEEEeCC--ccc-
Q 036714 208 EIATALKQSLLENEDKVRRAGELLGMLKAKE-KFVLILDDMWEAF-----RLEEVGIPEPSEENGCKLVVTTRS--VGI- 278 (932)
Q Consensus 208 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTTR~--~~v- 278 (932)
.|...+...........+....+.+...+.+ .+|+|+|.++... .+-.+ ..++ .-+++++|+.--- -+.
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp-~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWP-KLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeee-hhcc-cCCcceeeeeeehhhhhHH
Confidence 7777773332222223333344444444444 7999999987521 11111 1111 1235555543211 011
Q ss_pred ----ccc---cccee--EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 279 ----CRS---MGCKE--VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 279 ----~~~---~~~~~--~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
.+. .+... +..+|-+.++..++|..++..... .......++.+++|+.|.-
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAPS 362 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccCc
Confidence 110 11112 777899999999999988754432 2233345555666665444
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0013 Score=77.31 Aligned_cols=194 Identities=13% Similarity=0.175 Sum_probs=104.3
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
..++|. +.....|..++..+. .+.+.++|+.|+||||+|+.+++..... ..+.. ....++.-...+.+...
T Consensus 16 ~~liGq--~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~--~~~~~----~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQ--EAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL--NSDKP----TPEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC--CcCCC----CCCCCcccHHHHHHhcC
Confidence 678897 667788888887765 3678899999999999999999986321 11000 00011111112222111
Q ss_pred Hhcccc----ccchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCC-cccccc
Q 036714 213 LKQSLL----ENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRS-VGICRS 281 (932)
Q Consensus 213 l~~~~~----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~ 281 (932)
...+.. ......+.++++..... .+++-++|+|+++.. .....+...+......+.+|++|.+ ..+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 111000 00011122222222111 245568899999753 2344443333322334455555543 333222
Q ss_pred cc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 282 MG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 282 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
.. +..+++..++.++....+.+.+....... ..+.+..|++.++|.+..+....
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 22388889999998888877664432211 23568889999999886554443
No 146
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.59 E-value=0.00045 Score=75.38 Aligned_cols=143 Identities=14% Similarity=0.161 Sum_probs=78.8
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
.+++|. ++..+.+..++..+. ..++.++|++|+||||+|+.+++... .. +..++.+. .....+...+. .
T Consensus 21 ~~~~~~--~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~---~~---~~~i~~~~-~~~~~i~~~l~-~ 90 (316)
T PHA02544 21 DECILP--AADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG---AE---VLFVNGSD-CRIDFVRNRLT-R 90 (316)
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC---cc---ceEeccCc-ccHHHHHHHHH-H
Confidence 678998 667788888887665 46777799999999999999998751 11 23444443 22211111111 1
Q ss_pred HhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cc-cccccCCCCCCCCCcEEEEEeCCccc-cccc--ccee
Q 036714 213 LKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FR-LEEVGIPEPSEENGCKLVVTTRSVGI-CRSM--GCKE 286 (932)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~-~~~l~~~~~~~~~gs~iivTTR~~~v-~~~~--~~~~ 286 (932)
.. ... .. .+.+-++|+||+... .. ...+...+.....++++|+||....- .... ....
T Consensus 91 ~~--------------~~~-~~-~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 FA--------------STV-SL-TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HH--------------Hhh-cc-cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 00 000 01 134567899999754 11 12222222223456788888865321 1111 1112
Q ss_pred EeccCCCHHHHHHHHH
Q 036714 287 VRVQPLSNEEALNLFL 302 (932)
Q Consensus 287 ~~l~~L~~~~~~~lf~ 302 (932)
+.++..+.++..+++.
T Consensus 155 i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 155 IDFGVPTKEEQIEMMK 170 (316)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 6666667777665554
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.002 Score=73.96 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=90.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAK 237 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 237 (932)
..+.|+|..|+|||.|++++++...... ....+++++ ..++..++...+... ......+.+ .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yit------aeef~~el~~al~~~---------~~~~f~~~y-~- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVS------SEEFTNEFINSIRDG---------KGDSFRRRY-R- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEee------HHHHHHHHHHHHHhc---------cHHHHHHHh-h-
Confidence 4589999999999999999999873221 223455654 333444444333211 011122222 2
Q ss_pred CeEEEEEeccccc---cccc-cccCCCCC-CCCCcEEEEEeCCc---------ccccccccee-EeccCCCHHHHHHHHH
Q 036714 238 EKFVLILDDMWEA---FRLE-EVGIPEPS-EENGCKLVVTTRSV---------GICRSMGCKE-VRVQPLSNEEALNLFL 302 (932)
Q Consensus 238 kr~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~-~~l~~L~~~~~~~lf~ 302 (932)
+.=+|||||+... ..++ .+...+.. ...|..|||||+.. .+...+.... ++|++.+.+.-..++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 2358899999642 1121 22111110 12355688888762 2223334444 8999999999999999
Q ss_pred HhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 303 DKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
+++....... .+++++-|++.+.+..-.+.
T Consensus 457 kka~~r~l~l---~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 457 KKAVQEQLNA---PPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHhcCCCC---CHHHHHHHHHhccCCHHHHH
Confidence 8875543222 35677778777776654443
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.58 E-value=0.00078 Score=77.02 Aligned_cols=201 Identities=17% Similarity=0.225 Sum_probs=110.8
Q ss_pred ccccchHHHHHHHHHHhcCC--CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 136 LAGEKTKKVVEEIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 136 ~vGr~~~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
++|..-.........+.... ...-+.|+|++|+|||+|++++++..... ..-..+++++.. ++..++...+
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~v~yi~~~------~~~~~~~~~~ 197 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEK-NPNAKVVYVTSE------KFTNDFVNAL 197 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEEHH------HHHHHHHHHH
Confidence 45653333444444444432 23568999999999999999999987432 112345566432 3334444444
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----ccccccCCCCC-CCCCcEEEEEeCCc---------ccc
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----RLEEVGIPEPS-EENGCKLVVTTRSV---------GIC 279 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~iivTTR~~---------~v~ 279 (932)
... . .......+ + +.-+|||||+.... ..+.+...+.. ...|..||+||... .+.
T Consensus 198 ~~~-----~----~~~~~~~~-~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 198 RNN-----T----MEEFKEKY-R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred HcC-----c----HHHHHHHH-h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 221 0 11222233 2 34589999996421 11222111110 12344588887652 122
Q ss_pred cccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhh-------cCCCchHHHH
Q 036714 280 RSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCM-------RGVDEIHEWR 351 (932)
Q Consensus 280 ~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L-------~~~~~~~~w~ 351 (932)
..+.... +++++.+.++-..++.+.+..... .-.+++..-|++.++|..-.+.-+-..+ ...-+....+
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~ 343 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEEEGI---DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAK 343 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 3343333 899999999999999988754322 2234678889999998876544332221 1223455566
Q ss_pred HHHHHH
Q 036714 352 NALNEL 357 (932)
Q Consensus 352 ~~l~~l 357 (932)
.++..+
T Consensus 344 ~~l~~~ 349 (450)
T PRK00149 344 EALKDL 349 (450)
T ss_pred HHHHHh
Confidence 666654
No 149
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.57 E-value=0.00026 Score=65.98 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=41.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCC-
Q 036714 160 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKE- 238 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k- 238 (932)
|.|+|++|+||||+|+.+++... + .++.++.+...+. ...+....+...++......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~-~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----F-PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----S-EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----c-ccccccccccccc----------------ccccccccccccccccccccc
Confidence 57999999999999999999862 1 2344443321100 11222333344444433333
Q ss_pred eEEEEEecccc
Q 036714 239 KFVLILDDMWE 249 (932)
Q Consensus 239 r~LlVlDdv~~ 249 (932)
+.+|++||++.
T Consensus 59 ~~vl~iDe~d~ 69 (132)
T PF00004_consen 59 PCVLFIDEIDK 69 (132)
T ss_dssp SEEEEEETGGG
T ss_pred ceeeeeccchh
Confidence 89999999974
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=5.6e-05 Score=76.12 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=43.6
Q ss_pred ccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCc
Q 036714 750 FSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLR 829 (932)
Q Consensus 750 ~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 829 (932)
.+||+..+.+..||. ++.........++.+-.|+++. .++.++..... +.+||.|.-|.+++.|
T Consensus 197 ~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~~~~LnL~~-~~idswasvD~--------------Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPL-KTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDA--------------LNGFPQLVDLRVSENP 260 (418)
T ss_pred hcccchheeeecCcc-cchhhcccCCCCCcchhhhhcc-cccccHHHHHH--------------HcCCchhheeeccCCc
Confidence 347888888888863 3332333344455666666655 45555543211 6688999999888887
Q ss_pred ccccccC
Q 036714 830 EFKSFCS 836 (932)
Q Consensus 830 ~L~~i~~ 836 (932)
-+..+..
T Consensus 261 l~d~l~~ 267 (418)
T KOG2982|consen 261 LSDPLRG 267 (418)
T ss_pred ccccccC
Confidence 6665543
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00087 Score=78.45 Aligned_cols=180 Identities=13% Similarity=0.190 Sum_probs=101.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccC-------------------CCcEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN-------------------KFNVVIW 193 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~w 193 (932)
.+++|. +..++.|.+++..+.+ +.+.++|+.|+||||+|+.+++....... +.+ ++.
T Consensus 16 ~~iiGq--~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~~e 92 (576)
T PRK14965 16 SDLTGQ--EHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-VFE 92 (576)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-eee
Confidence 689998 6678888888887765 56689999999999999999988631110 111 111
Q ss_pred EEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEE
Q 036714 194 VTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVV 271 (932)
Q Consensus 194 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 271 (932)
+.......+.++ ++|.+.+.. .-..+++-++|+|+++.. .....+...+......+.+|+
T Consensus 93 id~~s~~~v~~i-r~l~~~~~~-----------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl 154 (576)
T PRK14965 93 IDGASNTGVDDI-RELRENVKY-----------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154 (576)
T ss_pred eeccCccCHHHH-HHHHHHHHh-----------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 221111122221 112111110 001245567899999753 223333333322233555555
Q ss_pred Ee-CCcccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH-HHHHH
Q 036714 272 TT-RSVGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL-AIVTV 337 (932)
Q Consensus 272 TT-R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 337 (932)
+| ....+..... +..+++.+++.++....+...+..... .-..+.+..|++.++|..- |+..+
T Consensus 155 ~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 155 ATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 4444432221 222889999999988888776543322 1234667789999998664 44443
No 152
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=4.9e-05 Score=76.54 Aligned_cols=86 Identities=23% Similarity=0.284 Sum_probs=47.6
Q ss_pred ccCCceeEEEccCCCCcc---cCccccccccccccccccccccCCCCCh-hccccCcEeecccCCCc--ccccccccCCC
Q 036714 538 VYMHGLKVLNLSRTNIKV---LPSSVSDLMNLRSLLLRWCENLERVPSL-AKLLALQYLDLEETGIE--EVPEGMEMLEN 611 (932)
Q Consensus 538 ~~l~~L~~L~L~~~~~~~---lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~~l~~L~~L~l~~~~i~--~lp~~~~~l~~ 611 (932)
..+..++.|||.+|.|+. +-.-+.++++|++|+|+.|..-..+.++ -.+.+|++|-|.++.+. .....+..+++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345566666666666542 2223345666666666654432222222 34556777777766443 44445566777
Q ss_pred CCEEeCCCCCCc
Q 036714 612 LSHLYLSSPRLK 623 (932)
Q Consensus 612 L~~L~l~~~~l~ 623 (932)
++.|.++.|++.
T Consensus 148 vtelHmS~N~~r 159 (418)
T KOG2982|consen 148 VTELHMSDNSLR 159 (418)
T ss_pred hhhhhhccchhh
Confidence 777777766543
No 153
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0021 Score=74.87 Aligned_cols=174 Identities=12% Similarity=0.143 Sum_probs=100.5
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccC-------------------CCcEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-------------------KFNVVIW 193 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~w 193 (932)
..++|. +..++.+.+++..+. .+.+.++|+.|+||||+|+.+++....... +++ ++.
T Consensus 16 ~~viGq--~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~e 92 (559)
T PRK05563 16 EDVVGQ--EHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIE 92 (559)
T ss_pred HhccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEE
Confidence 689998 667888888887765 456778999999999999999987631110 111 112
Q ss_pred EEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----hcCCeEEEEEeccccc--cccccccCCCCCCCCCc
Q 036714 194 VTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGML----KAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGC 267 (932)
Q Consensus 194 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 267 (932)
+..+....+. .+..+.... ..+++-++|+|++... ..+..+...+.......
T Consensus 93 idaas~~~vd----------------------~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ 150 (559)
T PRK05563 93 IDAASNNGVD----------------------EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHV 150 (559)
T ss_pred eeccccCCHH----------------------HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCe
Confidence 2211111111 111111111 1356678899999753 23334433333222344
Q ss_pred EEEE-EeCCccccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 268 KLVV-TTRSVGICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 268 ~iiv-TTR~~~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
.+|+ ||....+.... .+..++..+++.++....+...+..... .-..+.+..|++.++|.+.-+.
T Consensus 151 ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 151 IFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred EEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 4454 44443333222 1223888999999988888876643322 1124567788889998776543
No 154
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.005 Score=61.70 Aligned_cols=182 Identities=20% Similarity=0.243 Sum_probs=106.5
Q ss_pred CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHhccccccc--hHHHHHHHH
Q 036714 154 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALKQSLLENE--DKVRRAGEL 230 (932)
Q Consensus 154 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l 230 (932)
.++-+++.++|.-|.|||.+.+.+..... -+.++-+.+.. ......+...|+..+..+..... -..+....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 34457999999999999999996665541 22223344443 34666777888887776322111 122333445
Q ss_pred HHHHhcCCe-EEEEEeccccc--ccccccc---CCCCCCCCCcEEEEEeCCc-------ccccccc--cee-EeccCCCH
Q 036714 231 LGMLKAKEK-FVLILDDMWEA--FRLEEVG---IPEPSEENGCKLVVTTRSV-------GICRSMG--CKE-VRVQPLSN 294 (932)
Q Consensus 231 ~~~l~~~kr-~LlVlDdv~~~--~~~~~l~---~~~~~~~~gs~iivTTR~~-------~v~~~~~--~~~-~~l~~L~~ 294 (932)
.....+++| ..+++||..+. ..++.+. ..-.+...--+|+..-.-+ .+.+..+ ..- |.+.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 555557777 99999998753 2222221 1111111111233322211 0111111 122 89999999
Q ss_pred HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhh
Q 036714 295 EEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGC 340 (932)
Q Consensus 295 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 340 (932)
++...+++..++......+--..+....|..+..|.|.+|..++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999888887755432122234567888999999999999887643
No 155
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=2e-05 Score=70.16 Aligned_cols=85 Identities=22% Similarity=0.236 Sum_probs=40.3
Q ss_pred CceeEEEccCCCCcccCcccccc-ccccccccccccccCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCC
Q 036714 541 HGLKVLNLSRTNIKVLPSSVSDL-MNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLS 618 (932)
Q Consensus 541 ~~L~~L~L~~~~~~~lp~~i~~l-~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 618 (932)
.+|...+|++|.+.++|+.+... +.+++|+|++ +.+.++| .+..++.|+.|+++.|.+...|.-+..|.+|-.|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 34444555555555555444322 2444455544 2244444 4444455555555555555455444445555555554
Q ss_pred CCCCcccC
Q 036714 619 SPRLKKFP 626 (932)
Q Consensus 619 ~~~l~~~p 626 (932)
+|.+..+|
T Consensus 132 ~na~~eid 139 (177)
T KOG4579|consen 132 ENARAEID 139 (177)
T ss_pred CCccccCc
Confidence 44444443
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.48 E-value=0.00037 Score=85.44 Aligned_cols=155 Identities=14% Similarity=0.192 Sum_probs=90.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccC---CCcEEEEEEECCccCHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN---KFNVVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~~~~~~~~~i~ 210 (932)
..++|| +++++++++.|......-+.++|++|+|||++|+.++.......- .-+..+|. + +...++.
T Consensus 179 ~~~igr--~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a--- 248 (821)
T CHL00095 179 DPVIGR--EKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA--- 248 (821)
T ss_pred CCCCCc--HHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc---
Confidence 568999 889999999998766666779999999999999999998632110 11233442 1 1111110
Q ss_pred HHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc---------ccccccCCCCCCCCCcEEEEEeCCccccc-
Q 036714 211 TALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF---------RLEEVGIPEPSEENGCKLVVTTRSVGICR- 280 (932)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTTR~~~v~~- 280 (932)
+.. -..+..+++..++..+...++.+|++|++.... +...+..+... ...-++|.+|...+...
T Consensus 249 ---g~~--~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 ---GTK--YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKH 322 (821)
T ss_pred ---cCC--CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHH
Confidence 111 112334455566666555678999999996321 12222222211 12235555555443211
Q ss_pred -----ccc--ceeEeccCCCHHHHHHHHHHh
Q 036714 281 -----SMG--CKEVRVQPLSNEEALNLFLDK 304 (932)
Q Consensus 281 -----~~~--~~~~~l~~L~~~~~~~lf~~~ 304 (932)
.+. ...+.+...+.++...+++..
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 111 112788888999988887753
No 157
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.46 E-value=0.0012 Score=69.32 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=98.7
Q ss_pred ccccccchHHHHHHHHHHhcCCC---eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK---VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 210 (932)
+.+.+| +..+..+...+-... +..|-|.|..|.|||.+.+++.+... . ..+|+++-+.++.+.++..|+
T Consensus 6 ~~v~~R--e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-~-----~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 6 PNVPCR--ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-L-----ENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred cCccch--HHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-C-----cceeeehHHhccHHHHHHHHH
Confidence 457788 667788877775443 45668999999999999999999862 1 358999999999999999999
Q ss_pred HHHhcccccc-chH--HHHHHH----HHH--HHh-cCCeEEEEEecccccccccccc--------CCCCCCCCCcEEEEE
Q 036714 211 TALKQSLLEN-EDK--VRRAGE----LLG--MLK-AKEKFVLILDDMWEAFRLEEVG--------IPEPSEENGCKLVVT 272 (932)
Q Consensus 211 ~~l~~~~~~~-~~~--~~~~~~----l~~--~l~-~~kr~LlVlDdv~~~~~~~~l~--------~~~~~~~~gs~iivT 272 (932)
.+++....+. ... .+.... +.+ ... +++.++||||+++...+.+... ..++ .+.. +|++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i-~iil 154 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTI-VIIL 154 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCce-EEEE
Confidence 9985221111 111 111111 111 111 2468999999997654433221 1111 2233 3343
Q ss_pred eCCc---ccccccccee---EeccCCCHHHHHHHHHHh
Q 036714 273 TRSV---GICRSMGCKE---VRVQPLSNEEALNLFLDK 304 (932)
Q Consensus 273 TR~~---~v~~~~~~~~---~~l~~L~~~~~~~lf~~~ 304 (932)
+-.. .....+++.. +..+.-+.+|...++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3321 1112233333 677888899988888664
No 158
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.45 E-value=0.00067 Score=78.95 Aligned_cols=197 Identities=17% Similarity=0.167 Sum_probs=99.7
Q ss_pred ccccccchHHHHHHHHHHhcCC-----CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEEC---CccCHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGD-----KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS---QPLYLIKL 205 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s---~~~~~~~~ 205 (932)
.+++|. ++.++++..++... ...++.|+|++|+||||+++.+++... ++..-|+.-. ...+...+
T Consensus 84 del~~~--~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~-----~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 84 HELAVH--KKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG-----IQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred HHhcCc--HHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh-----hHHHHHhhhhhhccccccccc
Confidence 678887 66777787777642 245799999999999999999998752 2223332100 00000011
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHH------H----hcCCeEEEEEeccccc-----cccccccC-CCCCCCCCcEE
Q 036714 206 QTEIATALKQSLLENEDKVRRAGELLGM------L----KAKEKFVLILDDMWEA-----FRLEEVGI-PEPSEENGCKL 269 (932)
Q Consensus 206 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~------l----~~~kr~LlVlDdv~~~-----~~~~~l~~-~~~~~~~gs~i 269 (932)
...+..++.... ........++.. . ..+++.+|+||++.+. ..+..+.. .....+.-.-|
T Consensus 157 ~~s~~~~~~~~~----s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI 232 (637)
T TIGR00602 157 TLSLESCFSNFQ----SQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLV 232 (637)
T ss_pred chhhhhcccccc----chHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEE
Confidence 111222221110 111111111111 0 1346789999999432 12333332 22212222345
Q ss_pred EEEeCCc-------------------cccccccceeEeccCCCHHHHHHHHHHhhCCCCCCCCh----hhHHHHHHHHHH
Q 036714 270 VVTTRSV-------------------GICRSMGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPT----LDKKIINLVVEE 326 (932)
Q Consensus 270 ivTTR~~-------------------~v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~----~~~~~~~~i~~~ 326 (932)
++||-.. ++.....+..+...+++.....+.+.+.+......... ...+....|+..
T Consensus 233 ~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~ 312 (637)
T TIGR00602 233 FIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG 312 (637)
T ss_pred EEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh
Confidence 5555221 11112233338999999999777777765432110111 123567777778
Q ss_pred cCCCcHHHHHHHhhh
Q 036714 327 CAGLPLAIVTVAGCM 341 (932)
Q Consensus 327 ~~G~Plai~~~~~~L 341 (932)
++|.-..+.......
T Consensus 313 s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 313 CSGDIRSAINSLQFS 327 (637)
T ss_pred CCChHHHHHHHHHHH
Confidence 888665544444443
No 159
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0027 Score=68.27 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=104.6
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhcc------------CCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET------------NKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~~s~~~ 200 (932)
..++|. +..++.+...+..+. .+...++|+.|+||+++|..+++..-... ....-..|+.-....
T Consensus 4 ~~iiGq--~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQ--PLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCH--HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 457887 667888888888777 48999999999999999999988763211 111223444211000
Q ss_pred CHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEe
Q 036714 201 YLIKLQTEIATALKQSLL-ENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTT 273 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTT 273 (932)
.-..+-..-++..+.... ...-..+.++.+.+.+. .+++-++|+|+++.. .....+...+.... .+.+|++|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 000000000111110000 00001122333333322 346778899998753 22333332332222 33455444
Q ss_pred -CCcccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 274 -RSVGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 274 -R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
+...+..-.. +..+++.+++.++..+.+.+....+.. ......++..++|.|..+...
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc------hhHHHHHHHHcCCCHHHHHHH
Confidence 4444433222 223999999999999999876432211 112457889999999765443
No 160
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=8.2e-05 Score=53.64 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=17.2
Q ss_pred ceeEEEccCCCCcccCccccccccccccccccc
Q 036714 542 GLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWC 574 (932)
Q Consensus 542 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (932)
+|++|++++|.|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555555555555555555554
No 161
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.42 E-value=0.00044 Score=65.15 Aligned_cols=89 Identities=21% Similarity=0.150 Sum_probs=48.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAK 237 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 237 (932)
..+.|+|++|+||||+|+.+++.... ....+++++.+........... ...........................
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP---PGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC---CCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999998632 2123555544433222211111 011111111122222333333333333
Q ss_pred CeEEEEEecccccc
Q 036714 238 EKFVLILDDMWEAF 251 (932)
Q Consensus 238 kr~LlVlDdv~~~~ 251 (932)
+..++++|++....
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 35999999998643
No 162
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.41 E-value=3.9e-05 Score=79.24 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=35.7
Q ss_pred ccCCCCCEEeCCCCCCcccCCC----ccCCCCCcceEEeecCCchhhhc---HHHHHHHHhccceeEEEecChh
Q 036714 607 EMLENLSHLYLSSPRLKKFPTG----ILPRLRNLYKLKLSFGNEALRET---VEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 607 ~~l~~L~~L~l~~~~l~~~p~~----~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
..-++|+.+....|++...+.. .+...+.|+++.+..+....... ...+... ++|+.|++..|.++
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft 226 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFT 226 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC-Ccceeeecccchhh
Confidence 3445677777776665544321 24556677777766332221111 2334444 77777777766554
No 163
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.41 E-value=0.0091 Score=60.16 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=37.8
Q ss_pred CCcccccccchHHHHHHH----HHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 131 LTMATLAGEKTKKVVEEI----WEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 131 ~~~~~~vGr~~~~~~~~l----~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
++...++|. +..++.| ..++.+....-+.++|..|+|||++++++.+...
T Consensus 24 ~~l~~L~Gi--e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 24 IRLDDLIGI--ERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred CCHHHhcCH--HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 444789998 4444444 3455565677788899999999999999999874
No 164
>PRK08181 transposase; Validated
Probab=97.40 E-value=0.0065 Score=63.51 Aligned_cols=83 Identities=19% Similarity=0.150 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHH
Q 036714 145 VEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKV 224 (932)
Q Consensus 145 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 224 (932)
+....+|+.. ..-+.++|++|+|||.||..+++.... ....+.|++ ..++...+..... ...
T Consensus 96 L~~~~~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~------~~~L~~~l~~a~~-----~~~-- 157 (269)
T PRK08181 96 IAAGDSWLAK--GANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTR------TTDLVQKLQVARR-----ELQ-- 157 (269)
T ss_pred HHHHHHHHhc--CceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeee------HHHHHHHHHHHHh-----CCc--
Confidence 3333356543 355999999999999999999987632 223455554 3445444433211 111
Q ss_pred HHHHHHHHHHhcCCeEEEEEecccc
Q 036714 225 RRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 225 ~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
..+.++.+. +.=||||||+..
T Consensus 158 --~~~~l~~l~--~~dLLIIDDlg~ 178 (269)
T PRK08181 158 --LESAIAKLD--KFDLLILDDLAY 178 (269)
T ss_pred --HHHHHHHHh--cCCEEEEecccc
Confidence 112233332 345999999953
No 165
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.39 E-value=0.0012 Score=73.85 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=80.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+-|.++|++|+|||++|+.+++... ..| +.+..+. +.. ... ......+..++.....
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~---~~f---i~V~~se------L~~----k~~------Ge~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETS---ATF---LRVVGSE------LIQ----KYL------GDGPKLVRELFRVAEE 274 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC---CCE---EEEecch------hhh----hhc------chHHHHHHHHHHHHHh
Confidence 45688999999999999999999762 233 2222111 111 100 0111223334444445
Q ss_pred CCeEEEEEeccccccc----------------cccccCCCC--CCCCCcEEEEEeCCcccccc-----cccee-EeccCC
Q 036714 237 KEKFVLILDDMWEAFR----------------LEEVGIPEP--SEENGCKLVVTTRSVGICRS-----MGCKE-VRVQPL 292 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iivTTR~~~v~~~-----~~~~~-~~l~~L 292 (932)
+.+.+|+||+++.... +..+...+. ....+.+||+||...+.... ..... ++++.-
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~P 354 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNP 354 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCC
Confidence 6788999999853210 011111111 11235678888875433221 12223 899999
Q ss_pred CHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 293 SNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 293 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+.++..++|..++......... ....++..+.|+-
T Consensus 355 d~~~R~~Il~~~~~k~~l~~dv----dl~~la~~t~g~s 389 (438)
T PTZ00361 355 DEKTKRRIFEIHTSKMTLAEDV----DLEEFIMAKDELS 389 (438)
T ss_pred CHHHHHHHHHHHHhcCCCCcCc----CHHHHHHhcCCCC
Confidence 9999999999776443221111 2344555555544
No 166
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.003 Score=71.33 Aligned_cols=151 Identities=15% Similarity=0.237 Sum_probs=85.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAK 237 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 237 (932)
.-+.|+|+.|+|||+|++++++.... . ...+++++ ...+...+...+... . ... ++...+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~-~~~v~yi~------~~~f~~~~~~~l~~~------~---~~~-f~~~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--S-GGKILYVR------SELFTEHLVSAIRSG------E---MQR-FRQFYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--c-CCCEEEee------HHHHHHHHHHHHhcc------h---HHH-HHHHcc-
Confidence 56889999999999999999998732 1 23345554 233444444444321 1 111 122212
Q ss_pred CeEEEEEeccccccc----cccccCCCCC-CCCCcEEEEEeCCc---------ccccccccee-EeccCCCHHHHHHHHH
Q 036714 238 EKFVLILDDMWEAFR----LEEVGIPEPS-EENGCKLVVTTRSV---------GICRSMGCKE-VRVQPLSNEEALNLFL 302 (932)
Q Consensus 238 kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~-~~l~~L~~~~~~~lf~ 302 (932)
+.-+|++||+..... .+.+...+.. ...|..||+||... .+...+.... +++.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 345888999864311 1222211110 02345688888542 2222333333 8999999999999999
Q ss_pred HhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 303 DKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+.+....... ..++..-|++.+.|.-
T Consensus 282 ~k~~~~~~~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALSIRI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcCCCC---CHHHHHHHHHhcCCCH
Confidence 8775432212 2455666777776543
No 167
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=8.6e-05 Score=87.77 Aligned_cols=126 Identities=20% Similarity=0.166 Sum_probs=82.1
Q ss_pred CCceEEEeecCCCc-cCCChhhhccCCceeEEEccCCCCc--ccCccccccccccccccccccccCCCCChhccccCcEe
Q 036714 516 DILSTLLLQANGNL-WTIPECFFVYMHGLKVLNLSRTNIK--VLPSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYL 592 (932)
Q Consensus 516 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 592 (932)
.+|+.|++++.... ...|..+...+|.|+.|.+++-.+. ++..-..++++|..||+++ ..++.+..+++|++||+|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhccccHHHH
Confidence 46788888775332 3345555567888888888886643 3333345678888888888 446666678888888888
Q ss_pred ecccCCCcccc--cccccCCCCCEEeCCCCCCcccCC------CccCCCCCcceEEee
Q 036714 593 DLEETGIEEVP--EGMEMLENLSHLYLSSPRLKKFPT------GILPRLRNLYKLKLS 642 (932)
Q Consensus 593 ~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~------~~l~~l~~L~~L~l~ 642 (932)
.+++=.+..-. ..+..|++|++||+|.......+. +.-..|++|+.|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 88765555322 356778888888888655222221 112347788888877
No 168
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.36 E-value=2.5e-05 Score=88.50 Aligned_cols=102 Identities=28% Similarity=0.340 Sum_probs=43.9
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLR 572 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 572 (932)
.+..+++..|.+..+... ...+++|++|++++| .+..+.. +..++.|+.|++++|.|..+.. +..+..|+.++++
T Consensus 96 ~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc--hhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 344445555544444221 233445555555554 4443332 2334445555555554444332 2234444555554
Q ss_pred cccccCCCCC--hhccccCcEeecccCCCc
Q 036714 573 WCENLERVPS--LAKLLALQYLDLEETGIE 600 (932)
Q Consensus 573 ~~~~l~~lp~--~~~l~~L~~L~l~~~~i~ 600 (932)
+|. +..++. ...+.+|+.+.+.+|.+.
T Consensus 171 ~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YNR-IVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cch-hhhhhhhhhhhccchHHHhccCCchh
Confidence 432 222222 344444444444444443
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.33 E-value=0.0046 Score=68.64 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=81.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+-|.++|++|+|||++|+++++... ..| +.+..+ .+.... ++ .....+..++.....
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~---~~f---i~i~~s------~l~~k~---~g-------e~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTT---ATF---IRVVGS------EFVQKY---LG-------EGPRMVRDVFRLARE 236 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC---CCE---EEEehH------HHHHHh---cc-------hhHHHHHHHHHHHHh
Confidence 57799999999999999999998752 222 222111 111110 11 111223344444445
Q ss_pred CCeEEEEEecccccc------------c----cccccCCCC--CCCCCcEEEEEeCCcccccc--c---ccee-EeccCC
Q 036714 237 KEKFVLILDDMWEAF------------R----LEEVGIPEP--SEENGCKLVVTTRSVGICRS--M---GCKE-VRVQPL 292 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~gs~iivTTR~~~v~~~--~---~~~~-~~l~~L 292 (932)
..+.+|++|+++... . +..+...+. ....+..||+||...+.... . .-.. ++++.-
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 678999999986320 0 111111111 11245678888875433221 1 2223 888888
Q ss_pred CHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH
Q 036714 293 SNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL 332 (932)
Q Consensus 293 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 332 (932)
+.++...+|............. ...++++.+.|.--
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~sg 352 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKISA 352 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCCCH
Confidence 8888888888765433221111 24556667766543
No 170
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.33 E-value=0.0017 Score=72.47 Aligned_cols=159 Identities=21% Similarity=0.225 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhccccccch
Q 036714 144 VVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQSLLENED 222 (932)
Q Consensus 144 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~ 222 (932)
-..++.+.+..... ++.|.|+-++||||+++.+..... +. .+++..-+.. +-.++ .+..
T Consensus 25 ~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l-~d~~------------ 84 (398)
T COG1373 25 LLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIEL-LDLL------------ 84 (398)
T ss_pred hhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhH-HHHH------------
Confidence 34555555544433 999999999999999977776642 11 4555433221 11111 1111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCcccc-----ccc-ccee-EeccCCCHH
Q 036714 223 KVRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGIC-----RSM-GCKE-VRVQPLSNE 295 (932)
Q Consensus 223 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~-----~~~-~~~~-~~l~~L~~~ 295 (932)
... ..+...++..++||.|.....|+.....+.+.++. +|++|+-+.... +.. |-.. +++.||+..
T Consensus 85 -----~~~-~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 85 -----RAY-IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred -----HHH-HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 111 11112267899999999999998876666655555 788888774432 222 2222 899999998
Q ss_pred HHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 296 EALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 296 ~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
|-..+-. ... ....... .-+---..||.|-++..
T Consensus 158 Efl~~~~-----~~~-~~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 158 EFLKLKG-----EEI-EPSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred HHHhhcc-----ccc-chhHHHH-HHHHHHHhCCCcHHHhC
Confidence 8765543 100 0011111 12222346899987654
No 171
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.003 Score=68.25 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=86.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCC------------------CcEEEEEEEC---CccCHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNK------------------FNVVIWVTVS---QPLYLIKLQTEIATALKQ 215 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~------------------f~~~~wv~~s---~~~~~~~~~~~i~~~l~~ 215 (932)
...+.++|+.|+||||+|+.+++..--.... ..-+.|+.-. +...+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~i------------- 88 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKV------------- 88 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCH-------------
Confidence 5678899999999999999999887321100 0112233211 11111
Q ss_pred cccccchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCc-cccccc--ccee
Q 036714 216 SLLENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSV-GICRSM--GCKE 286 (932)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~--~~~~ 286 (932)
+.++++...+. .+++-++|+|+++.. .....+...+.....++.+|+||.+. .+..-. .+..
T Consensus 89 ---------d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~ 159 (328)
T PRK05707 89 ---------DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQ 159 (328)
T ss_pred ---------HHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhcee
Confidence 22222222211 234445577999863 23333333333223466677777664 333222 2233
Q ss_pred EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 287 VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 287 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
+.+.+++.+++.+.+.+..... ..+.+..++..++|.|.....+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999888754211 1244567789999999765444
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.31 E-value=0.0024 Score=75.09 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=95.1
Q ss_pred ccccccch-HHHHHHHHHHhcCCC---------eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
..+.|.+. .+++.+++.++.... .+-|.++|++|+|||+||+.+++... .. |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~---~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE---VP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC-----eeeccHH----
Confidence 56788743 345566666655321 35689999999999999999998751 11 2222211
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------------ccccccCCCC--CCCC
Q 036714 204 KLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------------RLEEVGIPEP--SEEN 265 (932)
Q Consensus 204 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~ 265 (932)
++.... .+ .....+..++.......+.+|++||++... .+..+...+. ....
T Consensus 251 ~f~~~~---~g-------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 251 EFVEMF---VG-------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHHh---hh-------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 111000 00 011233444555556778999999996321 1122221111 1234
Q ss_pred CcEEEEEeCCccccc-----ccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 266 GCKLVVTTRSVGICR-----SMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 266 gs~iivTTR~~~v~~-----~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+..||.||...+... ...-.. +.+...+.++-.++++.++..... ........+++.+.|..
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPGFS 388 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCCC
Confidence 556676776543221 111122 788888888888899887754321 12334567888887733
No 173
>PRK08118 topology modulation protein; Reviewed
Probab=97.31 E-value=0.00014 Score=70.67 Aligned_cols=37 Identities=27% Similarity=0.631 Sum_probs=30.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEE
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 194 (932)
+.|.|+|++|+||||||+.+++......-+||.++|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 3589999999999999999999875444567877763
No 174
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.29 E-value=0.0023 Score=72.63 Aligned_cols=158 Identities=15% Similarity=0.217 Sum_probs=83.5
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCeeEEEEEeCCCChHHHHHHHHHHHHhhcc--CCCcEEEEEEECC
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKET--NKFNVVIWVTVSQ 198 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~ 198 (932)
..+.|. +..++++.+.+. . ...+-|.++|++|+|||++|+++++...... .......|+.+..
T Consensus 182 ~dIgGl--~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGL--DSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCCh--HHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 556776 455555555432 1 1246689999999999999999999873210 0122344444433
Q ss_pred ccCHHHHHHHHHHHHhccccccchHHHHHHHHHH----HHhcCCeEEEEEecccccc---------cc-----ccccCCC
Q 036714 199 PLYLIKLQTEIATALKQSLLENEDKVRRAGELLG----MLKAKEKFVLILDDMWEAF---------RL-----EEVGIPE 260 (932)
Q Consensus 199 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~~kr~LlVlDdv~~~~---------~~-----~~l~~~~ 260 (932)
.. ++. ... . .....+..++. ....+++.+|+||+++... +. ..+...+
T Consensus 260 ~e----Ll~----kyv----G--ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 PE----LLN----KYV----G--ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred hh----hcc----ccc----c--hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 21 111 000 0 00111111111 1123578999999997421 11 1121111
Q ss_pred CC--CCCCcEEEEEeCCccccc-----ccccee-EeccCCCHHHHHHHHHHhhCC
Q 036714 261 PS--EENGCKLVVTTRSVGICR-----SMGCKE-VRVQPLSNEEALNLFLDKVGS 307 (932)
Q Consensus 261 ~~--~~~gs~iivTTR~~~v~~-----~~~~~~-~~l~~L~~~~~~~lf~~~~~~ 307 (932)
.. ...+..||.||...+... ...-.. ++++..+.++..++|..++..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 123445666665543321 112223 899999999999999988754
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.28 E-value=0.0021 Score=78.81 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=86.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhcc--C--CCcEEEEEEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET--N--KFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~--~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
..++|| +.++.++++.|......-+.++|++|+|||++|+.++....... . .-..++++..+.- ..
T Consensus 178 ~~vigr--~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a-- 247 (857)
T PRK10865 178 DPVIGR--DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA-- 247 (857)
T ss_pred CcCCCC--HHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh--
Confidence 579999 77899999999877767777999999999999999999862110 0 0112333332221 00
Q ss_pred HHHHhccccccchHHHHHHHHHHHHh-cCCeEEEEEecccccc---------ccccccCCCCCCCCCcEEEEEeCCcccc
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLK-AKEKFVLILDDMWEAF---------RLEEVGIPEPSEENGCKLVVTTRSVGIC 279 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTTR~~~v~ 279 (932)
+.. ...+...++..++..+. .+++.+|++|++.... +...+..+... ...-++|-||...+..
T Consensus 248 ----g~~--~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 248 ----GAK--YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYR 320 (857)
T ss_pred ----ccc--hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHHH
Confidence 000 01112233444444432 3568999999997531 12233223221 1233555555544321
Q ss_pred cc------c--cceeEeccCCCHHHHHHHHHHhh
Q 036714 280 RS------M--GCKEVRVQPLSNEEALNLFLDKV 305 (932)
Q Consensus 280 ~~------~--~~~~~~l~~L~~~~~~~lf~~~~ 305 (932)
.. . .-..+.+..-+.++...+++...
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 10 0 11126666668888888887644
No 176
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00081 Score=80.41 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=88.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccC---CCcEEEEEEECCccCHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN---KFNVVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~~~~~~~~~i~ 210 (932)
..++|| ++++.++++.|......-+.++|++|+|||++|+.+++......- ..++.+|.. +...++ +
T Consensus 186 ~~liGR--~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ll---a 255 (758)
T PRK11034 186 DPLIGR--EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLL---A 255 (758)
T ss_pred CcCcCC--CHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHh---c
Confidence 468999 779999999887765556678999999999999999987522111 123344421 111111 0
Q ss_pred HHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc----------cccccccCCCCCCCCCcEEEEEeCCccc--
Q 036714 211 TALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA----------FRLEEVGIPEPSEENGCKLVVTTRSVGI-- 278 (932)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTTR~~~v-- 278 (932)
+.. -..+.......++..+.+.++.+|++|++... .+...+..++.. ...-+||-+|...++
T Consensus 256 ---G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 ---GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ---ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHH
Confidence 000 01122333444555454456789999999742 112122222221 122345555543332
Q ss_pred --------cccccceeEeccCCCHHHHHHHHHHhh
Q 036714 279 --------CRSMGCKEVRVQPLSNEEALNLFLDKV 305 (932)
Q Consensus 279 --------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 305 (932)
.+.. ..+.+++.+.+++..++....
T Consensus 330 ~~~~D~AL~rRF--q~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRF--QKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhC--cEEEeCCCCHHHHHHHHHHHH
Confidence 2222 128999999999999988643
No 177
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0046 Score=67.53 Aligned_cols=140 Identities=20% Similarity=0.291 Sum_probs=80.7
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
.-..+.|+|..|.|||.|++++.+..... ..-..+++++ .+....+++..+... .+.+..+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~-~~~a~v~y~~------se~f~~~~v~a~~~~---------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN-GPNARVVYLT------SEDFTNDFVKALRDN---------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh-CCCceEEecc------HHHHHHHHHHHHHhh---------hHHHHHHhh-
Confidence 36889999999999999999999987322 1112344432 233333444333221 112222222
Q ss_pred cCCeEEEEEecccccc---ccc-cccCCCCC-CCCCcEEEEEeCC---------cccccccccee-EeccCCCHHHHHHH
Q 036714 236 AKEKFVLILDDMWEAF---RLE-EVGIPEPS-EENGCKLVVTTRS---------VGICRSMGCKE-VRVQPLSNEEALNL 300 (932)
Q Consensus 236 ~~kr~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTTR~---------~~v~~~~~~~~-~~l~~L~~~~~~~l 300 (932)
.-=++++||++... .++ .+...++. ...|-.||+|++. +.+...+...- +++.+.+.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 23388999997521 122 22211110 1234489999865 22333445555 89999999999999
Q ss_pred HHHhhCCCCCCCCh
Q 036714 301 FLDKVGSSTLQIPT 314 (932)
Q Consensus 301 f~~~~~~~~~~~~~ 314 (932)
+.+++.......++
T Consensus 253 L~kka~~~~~~i~~ 266 (408)
T COG0593 253 LRKKAEDRGIEIPD 266 (408)
T ss_pred HHHHHHhcCCCCCH
Confidence 99877555443333
No 178
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0034 Score=68.56 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=92.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
...+.+.|++|+|||+||..++.. ..|..+--++..+-- |. .+...-..+...+....+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~mi-------------G~---sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMI-------------GL---SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHcc-------------Cc---cHHHHHHHHHHHHHHhhc
Confidence 567889999999999999999975 467655544321111 10 111222233333433334
Q ss_pred CCeEEEEEeccccccccccccCCCCC-------------CCCCcE--EEEEeCCcccccccccee-----EeccCCCH-H
Q 036714 237 KEKFVLILDDMWEAFRLEEVGIPEPS-------------EENGCK--LVVTTRSVGICRSMGCKE-----VRVQPLSN-E 295 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~~~~~l~~~~~~-------------~~~gs~--iivTTR~~~v~~~~~~~~-----~~l~~L~~-~ 295 (932)
..--.||+||+....+|-.++..+.+ ...|-| |+-||....+.+.|+... |.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 55678999999887776665543221 123334 444666677777766432 89999987 7
Q ss_pred HHHHHHHHhh-CCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhh
Q 036714 296 EALNLFLDKV-GSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGC 340 (932)
Q Consensus 296 ~~~~lf~~~~-~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 340 (932)
+..+.+...- +. +.+.+.++++.+.+| +-.+|+.+..+
T Consensus 677 ~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~--~~vgIKklL~l 715 (744)
T KOG0741|consen 677 QLLEVLEELNIFS-----DDEVRAIAEQLLSKK--VNVGIKKLLML 715 (744)
T ss_pred HHHHHHHHccCCC-----cchhHHHHHHHhccc--cchhHHHHHHH
Confidence 7777776532 22 334566777777776 33334444333
No 179
>PRK08116 hypothetical protein; Validated
Probab=97.24 E-value=0.00077 Score=70.83 Aligned_cols=101 Identities=30% Similarity=0.326 Sum_probs=56.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAK 237 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 237 (932)
..+.++|.+|+|||+||.++++..... ...+++++ ..+++..+........ ... ....++.+ .+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~------~~~ll~~i~~~~~~~~--~~~----~~~~~~~l-~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN------FPQLLNRIKSTYKSSG--KED----ENEIIRSL-VN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE------HHHHHHHHHHHHhccc--ccc----HHHHHHHh-cC
Confidence 458899999999999999999997422 33456664 3345555544432211 011 11233333 22
Q ss_pred CeEEEEEecccc--ccccc--cccCCCC-CCCCCcEEEEEeCC
Q 036714 238 EKFVLILDDMWE--AFRLE--EVGIPEP-SEENGCKLVVTTRS 275 (932)
Q Consensus 238 kr~LlVlDdv~~--~~~~~--~l~~~~~-~~~~gs~iivTTR~ 275 (932)
- =||||||+.. ..+|. .+...+. ....+..+||||..
T Consensus 179 ~-dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 A-DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2 3899999942 22222 1211111 01345569999974
No 180
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.23 E-value=0.0017 Score=79.89 Aligned_cols=152 Identities=15% Similarity=0.183 Sum_probs=87.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEE-EEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIW-VTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~w-v~~s~~~~~~~~~~~i 209 (932)
..++|| +.++.+++..|......-+.++|++|+|||++|+.+++...... ......+| +.. ..+.
T Consensus 173 ~~~igr--~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~--- 241 (852)
T TIGR03346 173 DPVIGR--DEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALI--- 241 (852)
T ss_pred CcCCCc--HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHh---
Confidence 569999 77899999998776666677999999999999999998862210 00122222 221 1111
Q ss_pred HHHHhccccccchHHHHHHHHHHHHhc-CCeEEEEEecccccc---------ccccccCCCCCCCCC-cEEEEEeCCccc
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLKA-KEKFVLILDDMWEAF---------RLEEVGIPEPSEENG-CKLVVTTRSVGI 278 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~iivTTR~~~v 278 (932)
+ +.. ...+....+..++..+.+ +++.+|++|++.... +...+..+.. ..| -++|-+|.....
T Consensus 242 a---~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 242 A---GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEY 314 (852)
T ss_pred h---cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHH
Confidence 0 000 011222344445554432 468999999997431 1122222222 223 345545543322
Q ss_pred ----------cccccceeEeccCCCHHHHHHHHHHhh
Q 036714 279 ----------CRSMGCKEVRVQPLSNEEALNLFLDKV 305 (932)
Q Consensus 279 ----------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 305 (932)
.+.+ ..+.+...+.++...++....
T Consensus 315 r~~~~~d~al~rRf--~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRF--QPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcC--CEEEeCCCCHHHHHHHHHHHH
Confidence 1111 127888889999999887653
No 181
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.19 E-value=0.0011 Score=67.09 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=30.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 196 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 196 (932)
-.++|+|..|+|||||+..+.... ...|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 468899999999999999999876 467888877754
No 182
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.11 E-value=0.012 Score=59.23 Aligned_cols=229 Identities=16% Similarity=0.183 Sum_probs=127.5
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhc---cCCCcEEEEEEECC----------c---
Q 036714 136 LAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQ----------P--- 199 (932)
Q Consensus 136 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~----------~--- 199 (932)
+.++ ++....+.+....++.+-..++|+.|.||-|.+..+.++.-.. +-.-+...|.+.|. +
T Consensus 15 l~~~--~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYH--EELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccH--HHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 4444 5566667776666778999999999999999888888876321 11233344432221 1
Q ss_pred --------cCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeE-EEEEeccccc--cccccccCCCCCCCCCcE
Q 036714 200 --------LYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKF-VLILDDMWEA--FRLEEVGIPEPSEENGCK 268 (932)
Q Consensus 200 --------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 268 (932)
..-+.+.++|++...+..+-+ ....+.| ++|+-.+++. +.-..++.....-...+|
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 123345566666555432110 0022344 4555555431 111112111111234567
Q ss_pred EEEEeCCc-ccccccccee--EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCC-
Q 036714 269 LVVTTRSV-GICRSMGCKE--VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGV- 344 (932)
Q Consensus 269 iivTTR~~-~v~~~~~~~~--~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~- 344 (932)
+|+...+. .+-....... +++..-+++|....+.+.+..+....+ ++++.+|+++++|.-.-...+...++-+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 76644431 1222222222 899999999999999988766544333 6889999999999765544444444321
Q ss_pred ---------CchHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCC
Q 036714 345 ---------DEIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLK 383 (932)
Q Consensus 345 ---------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 383 (932)
-..-+|+-++.++........ .++.+..+-..=|+-|.
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQ-s~~~L~~vR~~LYeLL~ 283 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARVILKEQ-SPAKLLEVRGRLYELLS 283 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHh
Confidence 124589998888765544322 23445544444455443
No 183
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.08 E-value=0.01 Score=68.75 Aligned_cols=172 Identities=15% Similarity=0.171 Sum_probs=90.6
Q ss_pred ccccccch-HHHHHHHHHHhcC---------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
.+++|.+. .+.+.+++.++.. ...+-+.++|++|+|||++|+.+++... -. ++.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---~~-----~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG---VP-----FFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC---CC-----eeeccH----H
Confidence 66788733 2334445554432 1245688999999999999999998751 11 222221 1
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----c------------cccccCCCC--CCCC
Q 036714 204 KLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----R------------LEEVGIPEP--SEEN 265 (932)
Q Consensus 204 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----~------------~~~l~~~~~--~~~~ 265 (932)
++.. .... .....+..++.......+.+|++||++... . +..+...+. ....
T Consensus 123 ~~~~----~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 DFVE----MFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHH----HHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111 1100 011223344444445567899999996421 0 111111111 1123
Q ss_pred CcEEEEEeCCccc-----ccccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 266 GCKLVVTTRSVGI-----CRSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 266 gs~iivTTR~~~v-----~~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+..||.||...+. .+...-.. +.++..+.++-.++|..++..... . .......+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~--~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--A--PDVDLKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--C--cchhHHHHHHhCCCCC
Confidence 4456666655332 11112223 888888888888888877654322 1 1123457788887744
No 184
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.08 E-value=0.00011 Score=65.48 Aligned_cols=80 Identities=25% Similarity=0.321 Sum_probs=58.1
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLR 572 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 572 (932)
.+..+++++|.++.+|..+..+++.+++|++.+| .+.++|.. +..++.||.|+++.|.+...|..+..|.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 3566778888888777776667777777777777 77777777 467777777777777777777777667777777666
Q ss_pred cc
Q 036714 573 WC 574 (932)
Q Consensus 573 ~~ 574 (932)
+|
T Consensus 132 ~n 133 (177)
T KOG4579|consen 132 EN 133 (177)
T ss_pred CC
Confidence 53
No 185
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.0035 Score=67.52 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=65.4
Q ss_pred HHHHHHHhcC-CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcE-EEEEEECCc-cCHHHHHHHHHHHHhccccccc
Q 036714 145 VEEIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-VIWVTVSQP-LYLIKLQTEIATALKQSLLENE 221 (932)
Q Consensus 145 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~ 221 (932)
..++++.+.. +.-.-+.|+|.+|+|||||++.+++.... .+-+. ++|+.+.+. ..+.++...+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~--~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA--NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3446666652 33467799999999999999999998732 23233 467666654 4677888888777665432222
Q ss_pred hHH-----HHHHHHHHH-HhcCCeEEEEEecccc
Q 036714 222 DKV-----RRAGELLGM-LKAKEKFVLILDDMWE 249 (932)
Q Consensus 222 ~~~-----~~~~~l~~~-l~~~kr~LlVlDdv~~ 249 (932)
... ..+...... ...+++++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 211 111122222 2368999999999864
No 186
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.02 E-value=0.028 Score=68.73 Aligned_cols=46 Identities=37% Similarity=0.361 Sum_probs=35.4
Q ss_pred ccccccchHHHHHHHHHHhc------CCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM------GDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|. ++.+++|.+++. ....+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~--~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGL--KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCCh--HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457786 566777776553 1234689999999999999999999987
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.02 E-value=0.0048 Score=62.90 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=37.5
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEE
Q 036714 135 TLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 194 (932)
.+.++ ......++.++.+. .+|.+.|+.|+|||+||.+++.+.-. .+.|+.++-.
T Consensus 56 ~i~p~--n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI~ 110 (262)
T PRK10536 56 PILAR--NEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIVT 110 (262)
T ss_pred cccCC--CHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEEe
Confidence 34555 44556666777653 59999999999999999999986421 2345544443
No 188
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.01 E-value=0.0019 Score=63.04 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=65.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
.++||- ++.++++.-...+++.+-+.|.||+|+||||-+..+++..-. ...-+.+.-.+.|+...+..+...|-.-.
T Consensus 27 ~dIVGN--e~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG-~~~ke~vLELNASdeRGIDvVRn~IK~FA 103 (333)
T KOG0991|consen 27 QDIVGN--EDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLG-DSYKEAVLELNASDERGIDVVRNKIKMFA 103 (333)
T ss_pred HHhhCC--HHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhC-hhhhhHhhhccCccccccHHHHHHHHHHH
Confidence 679998 777888877778888999999999999999999999887632 12334455555565555444433321110
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA 250 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 250 (932)
+..-.+-.++.-++|||..+..
T Consensus 104 ---------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 ---------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred ---------------HhhccCCCCceeEEEeeccchh
Confidence 0011122466678999998763
No 189
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.00099 Score=63.85 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=49.6
Q ss_pred eEEEccCCCCcccCccccccccccccccccccccCCCCChh-ccccCcEeecccCCCcccc--cccccCCCCCEEeCCCC
Q 036714 544 KVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSLA-KLLALQYLDLEETGIEEVP--EGMEMLENLSHLYLSSP 620 (932)
Q Consensus 544 ~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~ 620 (932)
-.+||++|.+..++. +..+..|.+|.|++|....--|.+. .+++|+.|.+.+|+|.++- ..+..+++|++|.+-+|
T Consensus 45 d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 344455554443332 3344455555555433222222332 2445666666666555442 23455666777776666
Q ss_pred CCcccC---CCccCCCCCcceEEee
Q 036714 621 RLKKFP---TGILPRLRNLYKLKLS 642 (932)
Q Consensus 621 ~l~~~p---~~~l~~l~~L~~L~l~ 642 (932)
.+..-. .-++..+++|++|++.
T Consensus 124 pv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 124 PVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred chhcccCceeEEEEecCcceEeehh
Confidence 644322 2235677777777776
No 190
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.021 Score=61.27 Aligned_cols=173 Identities=13% Similarity=0.140 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCC---------------CcEEEEEEE-CCccCHHH
Q 036714 142 KKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNK---------------FNVVIWVTV-SQPLYLIK 204 (932)
Q Consensus 142 ~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---------------f~~~~wv~~-s~~~~~~~ 204 (932)
+...+.+...+..++ ...+.++|+.|+||+++|..+++..--.... ..-+.|+.. .+..+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~-- 87 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD-- 87 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc--
Confidence 345666777777766 4568999999999999999999876321100 000222210 000000
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCC-cc
Q 036714 205 LQTEIATALKQSLLENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRS-VG 277 (932)
Q Consensus 205 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~ 277 (932)
.. ...-..+.++++.+.+. .+++-++|+|+++.. ..-..+...+.....++.+|++|.. ..
T Consensus 88 -----------k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 88 -----------KL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPAR 155 (319)
T ss_pred -----------cc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhh
Confidence 00 00001222333333222 345678899999763 2222333233322346666666664 34
Q ss_pred cccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 278 ICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 278 v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
+..-.. +..+.+.+++.+++.+.+... +. + .+.+..++..++|.|.....+
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHH
Confidence 433222 333899999999998888653 21 1 233667899999999866544
No 191
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.97 E-value=0.0052 Score=61.13 Aligned_cols=172 Identities=16% Similarity=0.202 Sum_probs=96.7
Q ss_pred ccccccch-HHHHHHHHHHhcCC------CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGD------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQ 206 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 206 (932)
.+++|.+. .....-|++.|.++ .++-|..+|++|.|||.+|+++++... ..| +.+. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k---vp~-----l~vk-------at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK---VPL-----LLVK-------AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC---Cce-----EEec-------hH
Confidence 67888743 22334566777764 378999999999999999999999762 122 1111 11
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc----------cc----cccccCCCC--CCCCCcEEE
Q 036714 207 TEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA----------FR----LEEVGIPEP--SEENGCKLV 270 (932)
Q Consensus 207 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~----------~~----~~~l~~~~~--~~~~gs~ii 270 (932)
+-|.+.. .+...++.++.....+..++++.+|.++-. .+ ...+..-+. ..+.|-..|
T Consensus 186 ~liGehV-------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHV-------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHh-------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 2222222 223344555665555667999999987531 11 111211111 135566667
Q ss_pred EEeCCccccccc-ccee---EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 271 VTTRSVGICRSM-GCKE---VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 271 vTTR~~~v~~~~-~~~~---~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
-.|...++.... .... ++..-=+++|-..++...+..-.. ....-.+.++++.+|+.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl----pv~~~~~~~~~~t~g~S 319 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL----PVDADLRYLAAKTKGMS 319 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC----ccccCHHHHHHHhCCCC
Confidence 777665554322 1111 555555678888888877644221 12222556666666653
No 192
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.89 E-value=0.019 Score=69.45 Aligned_cols=46 Identities=26% Similarity=0.269 Sum_probs=37.2
Q ss_pred ccccccchHHHHHHHHHHhcC------CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|. ++.+++|++++.. ....++.++|++|+||||+|+.++...
T Consensus 322 ~~~~g~--~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGL--ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCH--HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457887 6778888877652 235789999999999999999999876
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.016 Score=63.11 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=81.8
Q ss_pred cccc-cchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhcc-------------------CCCcEEEE
Q 036714 135 TLAG-EKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIW 193 (932)
Q Consensus 135 ~~vG-r~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~w 193 (932)
.++| . +..++.+...+..++ .+...++|+.|+||||+|+.+++..-... .|-|. .+
T Consensus 6 ~i~~~q--~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~ 82 (329)
T PRK08058 6 QLTALQ--PVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HL 82 (329)
T ss_pred HHHhhH--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EE
Confidence 4556 3 456777777777766 45669999999999999999988763111 01121 11
Q ss_pred EEE-CCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCC
Q 036714 194 VTV-SQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENG 266 (932)
Q Consensus 194 v~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~g 266 (932)
+.. +.... .+.+..+...+. .+++-++|+|++... .....+...+.....+
T Consensus 83 i~~~~~~i~----------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 83 VAPDGQSIK----------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred eccccccCC----------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 111 11111 112222222221 245567899998753 2233343344333456
Q ss_pred cEEEEEeCCc-ccccccc--ceeEeccCCCHHHHHHHHHH
Q 036714 267 CKLVVTTRSV-GICRSMG--CKEVRVQPLSNEEALNLFLD 303 (932)
Q Consensus 267 s~iivTTR~~-~v~~~~~--~~~~~l~~L~~~~~~~lf~~ 303 (932)
+.+|++|.+. .+..-.. +..+++.+++.++..+.+.+
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 6677777653 3332222 22389999999998887765
No 194
>PRK07261 topology modulation protein; Provisional
Probab=96.88 E-value=0.0016 Score=63.51 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=27.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEE
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 194 (932)
.|.|+|++|+||||||+++........-+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 489999999999999999987753222345656663
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=96.86 E-value=0.017 Score=60.49 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998875
No 196
>PRK12377 putative replication protein; Provisional
Probab=96.85 E-value=0.0014 Score=67.64 Aligned_cols=73 Identities=27% Similarity=0.342 Sum_probs=45.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
...+.++|.+|+|||+||.++++.... ....+.++++. +++..|-..... ... ....++.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~~------~l~~~l~~~~~~----~~~----~~~~l~~l-- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTVP------DVMSRLHESYDN----GQS----GEKFLQEL-- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEHH------HHHHHHHHHHhc----cch----HHHHHHHh--
Confidence 467999999999999999999998742 22335666543 344444333211 111 11233444
Q ss_pred CCeEEEEEeccc
Q 036714 237 KEKFVLILDDMW 248 (932)
Q Consensus 237 ~kr~LlVlDdv~ 248 (932)
.+-=||||||+.
T Consensus 162 ~~~dLLiIDDlg 173 (248)
T PRK12377 162 CKVDLLVLDEIG 173 (248)
T ss_pred cCCCEEEEcCCC
Confidence 346799999994
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.043 Score=59.00 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCC--CcE-----EEEEEECCccCHHHHHHHHHHHHhc
Q 036714 144 VVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNK--FNV-----VIWVTVSQPLYLIKLQTEIATALKQ 215 (932)
Q Consensus 144 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~~-----~~wv~~s~~~~~~~~~~~i~~~l~~ 215 (932)
.-+.+...+..+. ...+.++|+.|+||+++|+.+++..--.... -.| .-++..+..+|+..+. .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE--------P 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------c
Confidence 4456667776665 4677899999999999999999876321100 000 0000000011100000 0
Q ss_pred cccccchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCC-cccccccc--cee
Q 036714 216 SLLENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRS-VGICRSMG--CKE 286 (932)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~~--~~~ 286 (932)
. ....-..+.++++.+.+. .+++-++|+|+++.. .....+...+.....++.+|++|.+ ..+..-.. +..
T Consensus 82 ~-~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 I-DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred c-cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0 000011222333332221 356678889999863 2233333333333446666666655 34442222 333
Q ss_pred EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 287 VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 287 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
+.+.+++.++..+.+....+.. ...+...+..++|.|..+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 9999999999998888764221 123556788899999643
No 198
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.83 E-value=0.0046 Score=59.88 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=31.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY 201 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 201 (932)
++.|+|++|+||||++..++.... .....++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcchH
Confidence 468999999999999999999873 2455678887765543
No 199
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.82 E-value=0.0065 Score=60.50 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=55.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHhccccc---cchHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALKQSLLE---NEDKVRRAGELLG 232 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 232 (932)
++||.++|+.|+||||.+.+++...... -..+..++... .....+-++..++.++.+... ..+......+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4799999999999999999998887432 44567776543 234556667888888876432 2233344444444
Q ss_pred HHhcCCeEEEEEecc
Q 036714 233 MLKAKEKFVLILDDM 247 (932)
Q Consensus 233 ~l~~~kr~LlVlDdv 247 (932)
.+..++.=+|++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 443333347777865
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.021 Score=67.27 Aligned_cols=60 Identities=20% Similarity=0.353 Sum_probs=41.8
Q ss_pred ccccccchHHHHHHHHHHhc-------CC--CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC
Q 036714 134 ATLAGEKTKKVVEEIWEDLM-------GD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 198 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 198 (932)
..++|. +++++.+.+.+. ++ .+++...+|+.|||||.||++++... ++.-+..+-++-|+
T Consensus 491 ~rViGQ--d~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSE 559 (786)
T COG0542 491 KRVIGQ--DEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSE 559 (786)
T ss_pred cceeCh--HHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHH
Confidence 457887 667777766653 22 25788889999999999999999987 33334455554443
No 201
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.78 E-value=0.00023 Score=82.85 Aligned_cols=109 Identities=21% Similarity=0.098 Sum_probs=55.0
Q ss_pred cccccccccccccccCCCC---ChhccccCcEeecccC--CCccc----ccccccCCCCCEEeCCCCC-CcccCCCc-cC
Q 036714 563 LMNLRSLLLRWCENLERVP---SLAKLLALQYLDLEET--GIEEV----PEGMEMLENLSHLYLSSPR-LKKFPTGI-LP 631 (932)
Q Consensus 563 l~~L~~L~L~~~~~l~~lp---~~~~l~~L~~L~l~~~--~i~~l----p~~~~~l~~L~~L~l~~~~-l~~~p~~~-l~ 631 (932)
+++|+.|.+.+|..+.... ....+++|+.|++++| .+... +.....+++|+.|+++++. +++.--.. ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555565555554421 3445566666666552 11111 1122334566666666655 33221111 12
Q ss_pred CCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecC
Q 036714 632 RLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFST 671 (932)
Q Consensus 632 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~ 671 (932)
.+++|++|.+..|...+...+..+...+++|+.|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3666777765555545555555555544667777776553
No 202
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.75 E-value=0.0071 Score=61.43 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=36.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQT 207 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 207 (932)
-.++.|+|++|+|||++|.+++.... .....++|++... +...++.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 58999999999999999999988763 2346789998875 55555543
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.72 E-value=0.035 Score=58.42 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHH
Q 036714 142 KKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQ 206 (932)
Q Consensus 142 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 206 (932)
.+..+++..++..+ .-|.+.|++|+|||++|+.+++.. . ....++++....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---D---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---C---CCEEEEeCCccCCHHHHh
Confidence 34456666666543 355689999999999999999754 1 124555555555544443
No 204
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.71 E-value=0.0023 Score=63.44 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=32.7
Q ss_pred HHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEE
Q 036714 147 EIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 195 (932)
Q Consensus 147 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 195 (932)
..++.+. ...++.+.|++|+|||.||.+.+-+. ...+.|+.++++.
T Consensus 11 ~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 11 FALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred HHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 3344444 46899999999999999999999876 3447888888874
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.042 Score=59.63 Aligned_cols=166 Identities=13% Similarity=0.107 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCC------------------CcEEEEEEECCccCHH
Q 036714 143 KVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNK------------------FNVVIWVTVSQPLYLI 203 (932)
Q Consensus 143 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~------------------f~~~~wv~~s~~~~~~ 203 (932)
..-+++...+..++ ...+.+.|+.|+||+++|..++...--.... -.-+.++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~---- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG---- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc----
Confidence 34566777777665 5678899999999999999998876321100 000122211000
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCC-c
Q 036714 204 KLQTEIATALKQSLLENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRS-V 276 (932)
Q Consensus 204 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~ 276 (932)
...-..+.++++.+.+. .+++-++|+|+++.. .....+...+.....++.+|++|.+ .
T Consensus 85 ---------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 85 ---------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPA 149 (334)
T ss_pred ---------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 00001222223332221 356778899999763 2233333333333446666666655 4
Q ss_pred ccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHH
Q 036714 277 GICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIV 335 (932)
Q Consensus 277 ~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 335 (932)
.+..-.. +..+.+.+++.+++.+.+.+..+. + .+.+..++..++|.|....
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 4443222 223899999999998888654321 1 2346788999999996443
No 206
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.67 E-value=0.0023 Score=61.44 Aligned_cols=78 Identities=27% Similarity=0.335 Sum_probs=39.6
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC--cccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP--SSVSDLMNLRSLLL 571 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L~L 571 (932)
...+++++|++-.++ .++.++.|.+|.+..| .+..+.+.+-..+++|..|.|.+|++..+- ..+..|+.|++|.+
T Consensus 44 ~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhcc--cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344555555554432 2445556666666655 555555544444555666666665554332 12334455555555
Q ss_pred ccc
Q 036714 572 RWC 574 (932)
Q Consensus 572 ~~~ 574 (932)
-+|
T Consensus 121 l~N 123 (233)
T KOG1644|consen 121 LGN 123 (233)
T ss_pred cCC
Confidence 443
No 207
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.66 E-value=0.011 Score=57.08 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCCe-eEEEEEeCCCChHHHHHHHHHHHHhhccCC-----------------CcEEEEEEECCc---c
Q 036714 142 KKVVEEIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNK-----------------FNVVIWVTVSQP---L 200 (932)
Q Consensus 142 ~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-----------------f~~~~wv~~s~~---~ 200 (932)
++..+.|.+.+..+++ ..+.++|+.|+||+++|..+++..-..... ..-+.|+..... .
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i 82 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSI 82 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSB
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchh
Confidence 5567777778877774 578999999999999999999876322211 222334432221 2
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCcc
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVG 277 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~ 277 (932)
.++++. ++.+.+.... ..+++=++|+|+++.. .....+...+......+.+|++|++.+
T Consensus 83 ~i~~ir-~i~~~~~~~~-----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 83 KIDQIR-EIIEFLSLSP-----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SHHHHH-HHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hHHHHH-HHHHHHHHHH-----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 222222 3322222111 0245668899999863 333344333333346788888887653
No 208
>PRK06921 hypothetical protein; Provisional
Probab=96.66 E-value=0.0038 Score=65.51 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=29.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 196 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 196 (932)
....+.++|..|+|||+||.++++.... .....+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEH
Confidence 3577999999999999999999998732 21334566653
No 209
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.63 E-value=0.0018 Score=59.25 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
||.|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999975
No 210
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.034 Score=58.46 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=87.6
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
.++-|.++|++|+|||-||++|+++- ...| +.|..+ ++.+..- .+....+.++++-..
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS--------ElVqKYi------GEGaRlVRelF~lAr 241 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS--------ELVQKYI------GEGARLVRELFELAR 241 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH--------HHHHHHh------ccchHHHHHHHHHHh
Confidence 36789999999999999999999975 2233 332221 1121111 112234556666555
Q ss_pred cCCeEEEEEeccccc----------cc------cccccCCCCC--CCCCcEEEEEeCCcccccc-----cccee-EeccC
Q 036714 236 AKEKFVLILDDMWEA----------FR------LEEVGIPEPS--EENGCKLVVTTRSVGICRS-----MGCKE-VRVQP 291 (932)
Q Consensus 236 ~~kr~LlVlDdv~~~----------~~------~~~l~~~~~~--~~~gs~iivTTR~~~v~~~-----~~~~~-~~l~~ 291 (932)
.+.+.+|.+|.++.. .+ .-.+...+.. ....-|||..|...++... ..-+. ++++.
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 678999999998631 00 1112222221 2334589998887666432 22222 77774
Q ss_pred CCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc----HHHHHHHhhh
Q 036714 292 LSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP----LAIVTVAGCM 341 (932)
Q Consensus 292 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P----lai~~~~~~L 341 (932)
=+.+.-.++|+-+....+....-+ .+.+++.|.|.- .|+.+=|+++
T Consensus 322 Pd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 322 PDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred CCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 444445566666654433212222 445666666654 3444445543
No 211
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.069 Score=58.23 Aligned_cols=167 Identities=15% Similarity=0.169 Sum_probs=90.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAK 237 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 237 (932)
+--.++||+|+|||+++.++++.. .|+. .-+..+...+ ..+ .++++.. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydI-ydLeLt~v~~---------------------n~d-Lr~LL~~--t~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDI-YDLELTEVKL---------------------DSD-LRHLLLA--TP 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCce-EEeeeccccC---------------------cHH-HHHHHHh--CC
Confidence 445799999999999999999986 2331 1122221111 111 2222222 23
Q ss_pred CeEEEEEecccccccccc--------------------ccCCCC--CCCC-CcEEE-EEeCCccc-----ccccccee-E
Q 036714 238 EKFVLILDDMWEAFRLEE--------------------VGIPEP--SEEN-GCKLV-VTTRSVGI-----CRSMGCKE-V 287 (932)
Q Consensus 238 kr~LlVlDdv~~~~~~~~--------------------l~~~~~--~~~~-gs~ii-vTTR~~~v-----~~~~~~~~-~ 287 (932)
.+-+||+.|++...++.. +...+. +..+ +-||| .||...+- .+....+. +
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 577888899875322110 111111 1122 23555 56665332 22222333 8
Q ss_pred eccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhh-hcCCCc-hHHHHHHHHHHhcc
Q 036714 288 RVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGC-MRGVDE-IHEWRNALNELRGR 360 (932)
Q Consensus 288 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~-L~~~~~-~~~w~~~l~~l~~~ 360 (932)
.+.-=+.+.-..|+.+.++.+. ...++.+|.+...|.-+.=..++.. |+.+.+ ...-+.+.+.++..
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~ 434 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESK 434 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence 8888899999999999987753 1245666666666666655555554 454423 33444444444433
No 212
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.53 E-value=0.013 Score=66.61 Aligned_cols=151 Identities=18% Similarity=0.162 Sum_probs=78.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+-|.++|++|+|||.+|+.+++... -.| +-++.+. +. . .. .......+.++++....
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~---~~~---~~l~~~~------l~----~----~~--vGese~~l~~~f~~A~~ 316 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQ---LPL---LRLDVGK------LF----G----GI--VGESESRMRQMIRIAEA 316 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEEhHH------hc----c----cc--cChHHHHHHHHHHHHHh
Confidence 56789999999999999999999862 111 2222211 11 0 00 01112233344444444
Q ss_pred CCeEEEEEeccccccc--------------cccccCCCCCCCCCcEEEEEeCCccc-c----cccccee-EeccCCCHHH
Q 036714 237 KEKFVLILDDMWEAFR--------------LEEVGIPEPSEENGCKLVVTTRSVGI-C----RSMGCKE-VRVQPLSNEE 296 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~~--------------~~~l~~~~~~~~~gs~iivTTR~~~v-~----~~~~~~~-~~l~~L~~~~ 296 (932)
..+++|++|+++.... +..+...+.....+--||.||...+- - +...-.. +.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 5789999999974210 00011111112233345567765432 1 1112223 7777778888
Q ss_pred HHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 297 ALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 297 ~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
-.++|+.++........ .......+++.+.|.-
T Consensus 397 R~~Il~~~l~~~~~~~~--~~~dl~~La~~T~GfS 429 (489)
T CHL00195 397 REKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHhhcCCCcc--cccCHHHHHhhcCCCC
Confidence 88898877654321000 1122456666766655
No 213
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.0023 Score=66.44 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..-+.|+|++|+|||+||..+.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 35689999999999999999998763
No 214
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.017 Score=67.39 Aligned_cols=175 Identities=17% Similarity=0.196 Sum_probs=103.4
Q ss_pred ccccccch-HHHHHHHHHHhcCCC---------eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
.++.|-+. .+++.+++.+|..+. ++=+-++|++|+|||-||++++.... +=|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--------VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--------VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--------CceeeechH----
Confidence 56777643 467788888887642 57789999999999999999998752 223444442
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------cccccCCCCCCC--
Q 036714 204 KLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR-----------------LEEVGIPEPSEE-- 264 (932)
Q Consensus 204 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----------------~~~l~~~~~~~~-- 264 (932)
+..+.+... ...+++.+++......+.++.+|+++...- +..+........
T Consensus 379 ----EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ----EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ----HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 112211111 133556667666677899999999864211 111211112111
Q ss_pred CCcEEEEEeCCcccccc-----cccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHH
Q 036714 265 NGCKLVVTTRSVGICRS-----MGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLA 333 (932)
Q Consensus 265 ~gs~iivTTR~~~v~~~-----~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 333 (932)
.+--++-+|+..++... ..-+. +.++.=+.....++|.-++..... ..+..++.+ |+...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHH
Confidence 22233345555555322 11122 667666777788888877755432 234556666 88888888755
No 215
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.51 E-value=0.016 Score=60.19 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=53.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEEEEECCccCHHHHHHHHHHHHhcccc------------ccc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL------------ENE 221 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------~~~ 221 (932)
-.++.|+|.+|+|||+||.+++-...... +....++|++....++..++. ++++..+.... ...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 58999999999999999999986532111 113578999888777765553 33343332110 001
Q ss_pred hHHHHHHHHHHHHhcC-CeEEEEEecccc
Q 036714 222 DKVRRAGELLGMLKAK-EKFVLILDDMWE 249 (932)
Q Consensus 222 ~~~~~~~~l~~~l~~~-kr~LlVlDdv~~ 249 (932)
+.......+...+.+. +.-+||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1112223333334344 667888887743
No 216
>PRK04132 replication factor C small subunit; Provisional
Probab=96.50 E-value=0.036 Score=66.74 Aligned_cols=154 Identities=11% Similarity=0.098 Sum_probs=91.0
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEE
Q 036714 165 MGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLIL 244 (932)
Q Consensus 165 ~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVl 244 (932)
|.++||||+|..++++.-.. ..-..++-++.++..++..+. ++++....... +...+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCEEEEE
Confidence 78999999999999986211 111246677777765555443 33322211100 00224579999
Q ss_pred eccccc--cccccccCCCCCCCCCcEEEEEeCC-cccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHH
Q 036714 245 DDMWEA--FRLEEVGIPEPSEENGCKLVVTTRS-VGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKI 319 (932)
Q Consensus 245 Ddv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~ 319 (932)
|+++.. .....+...+......+++|++|.+ ..+..... +..+++.+++.++....+...+....... ..+.
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~e~ 713 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TEEG 713 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CHHH
Confidence 999864 2333343333322345666666655 33332222 23399999999998888877654322211 2457
Q ss_pred HHHHHHHcCCCcHHHHHHH
Q 036714 320 INLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 320 ~~~i~~~~~G~Plai~~~~ 338 (932)
...|++.++|.+..+..+.
T Consensus 714 L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 714 LQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 8899999999886554433
No 217
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0066 Score=66.47 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=62.4
Q ss_pred ccccccch-HHHHHHHHHHhcCCC---------eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
.++-|-+. ..++++|+++|.++. ++-|.++|++|.|||-||++++-.. .+ .+| + ..+..|+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~V-PFF----~-~sGSEFd-- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-GV-PFF----Y-ASGSEFD-- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-CC-CeE----e-ccccchh--
Confidence 45566543 567899999998752 5779999999999999999999875 22 222 1 1222222
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccc
Q 036714 204 KLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 204 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
++.-. -...+++.+++.....-+++|.+|.++.
T Consensus 375 ----Em~VG---------vGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 375 ----EMFVG---------VGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ----hhhhc---------ccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 11111 1134566777777677899999999863
No 218
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.078 Score=56.83 Aligned_cols=161 Identities=11% Similarity=0.149 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccC------------------CCcEEEEEEEC---Ccc
Q 036714 143 KVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWVTVS---QPL 200 (932)
Q Consensus 143 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~s---~~~ 200 (932)
...+.+...+..++ ...+-++|+.|+||+++|+.+++..--... |-| ..|+.-. +..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I 88 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcC
Confidence 34556666666665 568899999999999999999887632110 111 2222211 111
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeC
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTR 274 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR 274 (932)
. .+.++.+.+.+. .+++=++|+|+++.. .....+...+.....++.+|++|.
T Consensus 89 ~----------------------vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 89 T----------------------VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred C----------------------HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 1 112222222221 344568889999763 233333333333344566666655
Q ss_pred C-cccccccc--ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 275 S-VGICRSMG--CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 275 ~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
+ ..+..-.. +..+.+.+++.+++.+.+... +. . .+..+++.++|.|+....+
T Consensus 147 ~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~~-----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 147 NQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-GI-----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc-CC-----c-----hHHHHHHHcCCCHHHHHHH
Confidence 4 34443222 223899999999999888653 11 1 1356788999999876544
No 219
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.013 Score=66.27 Aligned_cols=186 Identities=16% Similarity=0.219 Sum_probs=105.7
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
.++||. +.....|...+..++ ..--...|+-|+||||+|+.++....-... ...++++.=...+.|...
T Consensus 16 ~evvGQ--e~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~--------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQ--EHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG--------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred HHhccc--HHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC--------CCCCcchhhhhhHhhhcC
Confidence 678998 557777888887765 456678999999999999999987632210 111112111222222211
Q ss_pred Hhcccc----ccchHHHHHHHHHHHHh----cCCeEEEEEecccc--ccccccccCCCCCCCCCcEEEEEeCC-cccccc
Q 036714 213 LKQSLL----ENEDKVRRAGELLGMLK----AKEKFVLILDDMWE--AFRLEEVGIPEPSEENGCKLVVTTRS-VGICRS 281 (932)
Q Consensus 213 l~~~~~----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~ 281 (932)
-..+.- ......+..+++..... .++.=+.|+|+|+- ...+..+...+...-...+.|+.|++ ..+..-
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 000000 01112233333433332 35566889999974 44555555444433345555555555 334321
Q ss_pred --ccceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH
Q 036714 282 --MGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL 332 (932)
Q Consensus 282 --~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 332 (932)
..+..|.+..++.++-...+...+..+.. ....+....|++..+|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCChh
Confidence 22333999999999999999888765543 2234566667777777554
No 220
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.1 Score=58.97 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=46.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
..+|+|+|++|+||||++..++..... ......+..++... .....+-++...+.++.......+ .......++.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l- 426 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERL- 426 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHh-
Confidence 479999999999999999999887632 22223455554321 111222233333344433222111 12233334444
Q ss_pred cCCeEEEEEeccc
Q 036714 236 AKEKFVLILDDMW 248 (932)
Q Consensus 236 ~~kr~LlVlDdv~ 248 (932)
. +.=+|++|..-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 2 34578888864
No 221
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.025 Score=64.41 Aligned_cols=64 Identities=23% Similarity=0.234 Sum_probs=46.2
Q ss_pred ccccccchHHHHHHHHHHhcC------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKL 205 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 205 (932)
..=+|. ++.+++|++++.- -+-+++..+|++|+|||++|+.++....+. + +.++|+.-.|+.+|
T Consensus 411 eDHYgm--~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F----fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGM--EDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F----FRFSVGGMTDVAEI 480 (906)
T ss_pred ccccch--HHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e----EEEeccccccHHhh
Confidence 344565 6678888888742 246899999999999999999999988432 2 33466666565554
No 222
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.39 E-value=0.024 Score=60.91 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=43.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhc---cCCCcEEEEEEECCccCHHHHHHHHHHHHhcc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLYLIKLQTEIATALKQS 216 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 216 (932)
-+++-|+|++|+|||+|+.+++-..+.. ...-..++|++....+..+++. ++++.++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 4788899999999999999877543211 1123478999999988888875 456666543
No 223
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.38 E-value=0.12 Score=56.59 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHH-HHHHHHHhhccCCCcEEEEEEECCc---cCHHHHHHHHHHHHhc--
Q 036714 142 KKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNVVIWVTVSQP---LYLIKLQTEIATALKQ-- 215 (932)
Q Consensus 142 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~-- 215 (932)
.+..+.|..||....-..|.|.||-|.||+.|+ .++.++.. .+..+++.+- .+-..++..++.++|-
T Consensus 2 ~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~-------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 2 KEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK-------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred chHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC-------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 456788999999888899999999999999999 77776531 1555554331 2233444455544431
Q ss_pred ----------------------cccccchHHHHHHHHH-------HH-----H--------------h---cCCeEEEEE
Q 036714 216 ----------------------SLLENEDKVRRAGELL-------GM-----L--------------K---AKEKFVLIL 244 (932)
Q Consensus 216 ----------------------~~~~~~~~~~~~~~l~-------~~-----l--------------~---~~kr~LlVl 244 (932)
...-..+....+..++ +. . + ..++=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0000011111111110 00 0 0 113568999
Q ss_pred eccccccc--------cccccCCCCCCCCCcEEEEEeCCccccc----cccce--e-EeccCCCHHHHHHHHHHhhCCCC
Q 036714 245 DDMWEAFR--------LEEVGIPEPSEENGCKLVVTTRSVGICR----SMGCK--E-VRVQPLSNEEALNLFLDKVGSST 309 (932)
Q Consensus 245 Ddv~~~~~--------~~~l~~~~~~~~~gs~iivTTR~~~v~~----~~~~~--~-~~l~~L~~~~~~~lf~~~~~~~~ 309 (932)
|+.-.... +.+....+- ..+-.+||++|-+..... .+... . +.|...+.+.|..+...++....
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 99754211 111112222 234457888887754433 33222 2 89999999999999999875431
Q ss_pred CC-------------C----ChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCch
Q 036714 310 LQ-------------I----PTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEI 347 (932)
Q Consensus 310 ~~-------------~----~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~ 347 (932)
.. . .....+-....++.+||--.-+..+++.++...++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 10 0 01244556678889999999999999999876553
No 224
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.38 E-value=0.0038 Score=60.42 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=75.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccc--hHHHHHHHHHHHHhcC
Q 036714 160 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENE--DKVRRAGELLGMLKAK 237 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~~ 237 (932)
+.|.|.+|+|||++|.++... ....++++.....++. ++.+.|...-........ .....+.+.+... .
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-
Confidence 679999999999999999764 2235677777766654 344444443222211111 1111222222222 1
Q ss_pred CeEEEEEecccc--ccc---------------cccccCCCCCCCCCcEEEEEeCCccccccccceeEeccCCCHHHHHHH
Q 036714 238 EKFVLILDDMWE--AFR---------------LEEVGIPEPSEENGCKLVVTTRSVGICRSMGCKEVRVQPLSNEEALNL 300 (932)
Q Consensus 238 kr~LlVlDdv~~--~~~---------------~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~l~~L~~~~~~~l 300 (932)
+.-.+++|.+.. ... +..+...+. ..+..+|++|.. +-.+..+.+..-..
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnE-----------vG~g~vp~~~~~r~ 139 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNE-----------VGLGVVPENALGRR 139 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECC-----------cCCCCCCCCHHHHH
Confidence 234799998731 100 111222222 345557777652 22334455666677
Q ss_pred HHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH
Q 036714 301 FLDKVGSSTLQIPTLDKKIINLVVEECAGLPL 332 (932)
Q Consensus 301 f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 332 (932)
|...+|.- ...+...+.++.....|+|+
T Consensus 140 f~d~lG~l----nq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 140 FRDELGRL----NQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHHH----HHHHHHHCCEEEEEECCcce
Confidence 77766542 23333444444444457775
No 225
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.34 E-value=0.017 Score=59.45 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=35.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKL 205 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 205 (932)
-.++.|+|.+|+|||++|.+++.... .....++|++.. .++..++
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 57999999999999999999998763 234678899877 5555544
No 226
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.26 Score=56.82 Aligned_cols=63 Identities=29% Similarity=0.304 Sum_probs=44.4
Q ss_pred cccccchHHHHHHHHHHhc------CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLM------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKL 205 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 205 (932)
.=+|- ++.+++|+++|. +-+-+++.+||++|+|||+|++.+++... ..| +-++++...|..++
T Consensus 324 dHYGL--ekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~---Rkf---vR~sLGGvrDEAEI 392 (782)
T COG0466 324 DHYGL--EKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG---RKF---VRISLGGVRDEAEI 392 (782)
T ss_pred cccCc--hhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC---CCE---EEEecCccccHHHh
Confidence 34555 678888988874 22358999999999999999999999873 223 34455554444443
No 227
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.33 E-value=0.018 Score=59.27 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=36.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEEEEECCccCHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLYLIKLQ 206 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 206 (932)
-.++.|+|.+|+|||+||.+++....... ..-..++|++....++..++.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 57999999999999999999987652110 011567899887777765553
No 228
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.31 E-value=0.00079 Score=78.41 Aligned_cols=87 Identities=22% Similarity=0.091 Sum_probs=60.2
Q ss_pred ccccCcEeecccC-CCcc--cccccccCCCCCEEeCCCC-C-CcccC---CCccCCCCCcceEEeecCCchhhhcHHHHH
Q 036714 585 KLLALQYLDLEET-GIEE--VPEGMEMLENLSHLYLSSP-R-LKKFP---TGILPRLRNLYKLKLSFGNEALRETVEEAA 656 (932)
Q Consensus 585 ~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~-~-l~~~p---~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 656 (932)
.+++|+.|.+.++ .+.. +-.....+++|+.|+++++ . ....+ ......+++|+.|+++++....+..+..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3678888888888 5554 4455677889999999873 2 11111 123466788999999877767777777777
Q ss_pred HHHhccceeEEEecC
Q 036714 657 RLSDRLDTFEGIFST 671 (932)
Q Consensus 657 ~l~~~L~~L~l~~~~ 671 (932)
..|++|+.|.+..|.
T Consensus 266 ~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCS 280 (482)
T ss_pred hhCCCcceEccCCCC
Confidence 755788888765443
No 229
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.12 Score=55.91 Aligned_cols=90 Identities=13% Similarity=0.188 Sum_probs=53.7
Q ss_pred CCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCC-ccccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCC
Q 036714 237 KEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRS-VGICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQ 311 (932)
Q Consensus 237 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~-~~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 311 (932)
+++-++|+|+++.. .....+...+....+++.+|++|.+ ..+..-. .+..+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 45568889999763 3333443334333456656655554 4444322 2334999999999999888764 21
Q ss_pred CChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 312 IPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 312 ~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
++ ...++..++|.|.....+
T Consensus 206 -~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755443
No 230
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.27 E-value=0.0084 Score=55.44 Aligned_cols=122 Identities=19% Similarity=0.300 Sum_probs=56.2
Q ss_pred cCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc-ccccccccccccccccccCCCC--Ch
Q 036714 507 IPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS-VSDLMNLRSLLLRWCENLERVP--SL 583 (932)
Q Consensus 507 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp--~~ 583 (932)
++...|.+|++|+.+.+.. .+..++...|.++..|+.+.+..+ +..++.. +..+.+|+.+.+.. .+..++ .+
T Consensus 3 i~~~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence 4455667777777777663 456677777777777777777764 5555442 44555677777753 233333 46
Q ss_pred hccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCc
Q 036714 584 AKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNL 636 (932)
Q Consensus 584 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L 636 (932)
..+.+|+.+++..+ +..++.. +... +|+.+.+.. .+..++...|.++++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66777777777553 5555433 3444 677777654 4555666666666555
No 231
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0028 Score=63.64 Aligned_cols=101 Identities=24% Similarity=0.247 Sum_probs=49.8
Q ss_pred ccccccccccccccCCCCChhccccCcEeecccC--CCc-ccccccccCCCCCEEeCCCCCCc---ccCCCccCCCCCcc
Q 036714 564 MNLRSLLLRWCENLERVPSLAKLLALQYLDLEET--GIE-EVPEGMEMLENLSHLYLSSPRLK---KFPTGILPRLRNLY 637 (932)
Q Consensus 564 ~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~l~---~~p~~~l~~l~~L~ 637 (932)
..|+.|++.++ .++.+.++-.|++|++|.++.| .+. .++.-...+++|++|++++|+++ .+++ +..+.+|.
T Consensus 43 ~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred cchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 34444444432 2333334445556666666665 333 34333444566777777766644 2322 45566666
Q ss_pred eEEeecCCchhhhcH--HHHHHHHhccceeEEE
Q 036714 638 KLKLSFGNEALRETV--EEAARLSDRLDTFEGI 668 (932)
Q Consensus 638 ~L~l~~~~~~~~~~~--~~l~~l~~~L~~L~l~ 668 (932)
.|+++.|........ ..+.-+ ++|+.|+-.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll-~~L~~LD~~ 151 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLL-PSLKYLDGC 151 (260)
T ss_pred hhhcccCCccccccHHHHHHHHh-hhhcccccc
Confidence 666665443322221 223334 666666654
No 232
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.02 Score=62.71 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=69.5
Q ss_pred ccccchHHHHHHHHHHhc-CCCee-EEEEEeCCCChHHHHHHHHHHHHhhccC------------------CCcEEEEEE
Q 036714 136 LAGEKTKKVVEEIWEDLM-GDKVT-KIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWVT 195 (932)
Q Consensus 136 ~vGr~~~~~~~~l~~~L~-~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~ 195 (932)
++|- +....++..+.. .++.+ .+.++|++|+||||+|..+++....... ....+..+.
T Consensus 3 ~~~~--~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 3 LVPW--QEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred cccc--hhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 4454 456666777766 33444 4999999999999999999998742111 123445555
Q ss_pred ECCccC---HHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEE
Q 036714 196 VSQPLY---LIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLV 270 (932)
Q Consensus 196 ~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 270 (932)
.++... ..+..+++.+....... .++.-++++|+++.. +....+...+......+.+|
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 444443 23333333333322110 356789999999863 22223332233334566777
Q ss_pred EEeCC
Q 036714 271 VTTRS 275 (932)
Q Consensus 271 vTTR~ 275 (932)
++|..
T Consensus 144 l~~n~ 148 (325)
T COG0470 144 LITND 148 (325)
T ss_pred EEcCC
Confidence 77763
No 233
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.24 E-value=0.043 Score=57.33 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=41.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhc---cCCCcEEEEEEECCccCHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLYLIKLQTEIATALK 214 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 214 (932)
-.+.=|+|.+|+|||.|+.+++-..... .+.-..++|++....+...++. +|++..+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4788999999999999999887654221 1234579999999999988885 5666543
No 234
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.23 E-value=0.01 Score=67.64 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=54.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-h
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGML-K 235 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 235 (932)
-+++.++|++|.||||||+-++++. .| .++-++.|+.-....+-..|...+.... .+ .
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l~a 384 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VLDA 384 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cccc
Confidence 5899999999999999999999874 33 3778888888877777666655543321 11 1
Q ss_pred cCCeEEEEEeccccc
Q 036714 236 AKEKFVLILDDMWEA 250 (932)
Q Consensus 236 ~~kr~LlVlDdv~~~ 250 (932)
.+++.-||+|.++-.
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 367889999998753
No 235
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.23 E-value=0.031 Score=58.15 Aligned_cols=167 Identities=19% Similarity=0.198 Sum_probs=93.4
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCH-HHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYL-IKLQTE 208 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~ 208 (932)
..++|- .++-.++-.++. .++..-|.|+|+.|.|||+|...+..+.+...++ .+-|........ .-.++.
T Consensus 24 ~~l~g~--~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGV--QDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeeh--HHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHH
Confidence 456776 445555555553 3456678899999999999999888874322333 344444333322 234466
Q ss_pred HHHHHhcccc----ccchHHHHHHHHHHHHhcC-----CeEEEEEeccccc-----cc-cccc-cCCCCCCCCCcEEEEE
Q 036714 209 IATALKQSLL----ENEDKVRRAGELLGMLKAK-----EKFVLILDDMWEA-----FR-LEEV-GIPEPSEENGCKLVVT 272 (932)
Q Consensus 209 i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~-----kr~LlVlDdv~~~-----~~-~~~l-~~~~~~~~~gs~iivT 272 (932)
|..++..... ...+..+....++..+..+ -+++.|+|.++-. +. +-.+ -..-....+-|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 6666544322 1222334455566666533 3688888887532 11 1111 1111123556778899
Q ss_pred eCCc-------ccccccccee-EeccCCCHHHHHHHHHHhh
Q 036714 273 TRSV-------GICRSMGCKE-VRVQPLSNEEALNLFLDKV 305 (932)
Q Consensus 273 TR~~-------~v~~~~~~~~-~~l~~L~~~~~~~lf~~~~ 305 (932)
||-. .|-....... +-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9963 2222333333 5566777888888888765
No 236
>PRK04296 thymidine kinase; Provisional
Probab=96.18 E-value=0.0058 Score=60.81 Aligned_cols=112 Identities=7% Similarity=-0.027 Sum_probs=59.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE--NEDKVRRAGELLGMLK 235 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 235 (932)
.++.|+|+.|.||||+|..++.+... ....++.+.- .++.......++++++..... ..........+.. .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh--h
Confidence 47789999999999999999988732 2233343421 111111122345555432221 1111112222211 2
Q ss_pred cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCccc
Q 036714 236 AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVGI 278 (932)
Q Consensus 236 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v 278 (932)
.++.-+||+|.+.-. +++.++...+. ..|..||+|.++.+.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 345568999999542 22333332222 457789999998654
No 237
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.17 E-value=0.0068 Score=65.12 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=38.8
Q ss_pred ccccccchHHHHHHHHHHhcC------CCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..++|. ++.++++++++.. ...+++.++|++|+||||||+.+++...
T Consensus 51 ~~~~G~--~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGM--EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCc--HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 378897 6778888887742 2458899999999999999999999883
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.0087 Score=64.54 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=28.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 196 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 196 (932)
.-+.++|.+|+|||+||.++++.... .. ..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~--~g-~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD--RG-KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH--CC-CeEEEEEH
Confidence 77999999999999999999998732 22 34666653
No 239
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.067 Score=60.01 Aligned_cols=70 Identities=23% Similarity=0.426 Sum_probs=48.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+-|.++|++|+|||.||++++++.. +-|+.++.+ +|..... ....+.+.+++.....
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~--------vPf~~isAp--------eivSGvS------GESEkkiRelF~~A~~ 280 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELG--------VPFLSISAP--------EIVSGVS------GESEKKIRELFDQAKS 280 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcC--------CceEeecch--------hhhcccC------cccHHHHHHHHHHHhc
Confidence 56788999999999999999999872 123344432 2222221 2234456677777767
Q ss_pred CCeEEEEEeccc
Q 036714 237 KEKFVLILDDMW 248 (932)
Q Consensus 237 ~kr~LlVlDdv~ 248 (932)
..++++++|+++
T Consensus 281 ~aPcivFiDeID 292 (802)
T KOG0733|consen 281 NAPCIVFIDEID 292 (802)
T ss_pred cCCeEEEeeccc
Confidence 789999999986
No 240
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.10 E-value=0.017 Score=61.76 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=52.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcccc-----ccchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL-----ENEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 231 (932)
-+++-|+|++|+||||||.+++..... .-..++|++....++.. .+++++.+.. ......+....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 479999999999999999998887632 34567888776655543 3444443211 1111222222222
Q ss_pred HHHhcCCeEEEEEecccc
Q 036714 232 GMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~~ 249 (932)
.....+..-+||+|.|..
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 222245567999999853
No 241
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.09 E-value=0.0095 Score=72.97 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=35.7
Q ss_pred ccccccchHHHHHHHHHHhc-------CC--CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM-------GD--KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. +..++.+.+.+. ++ ...++.++|++|+|||.+|+.++...
T Consensus 566 ~~v~GQ--~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQ--DHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcCh--HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 568888 567777766653 11 24688999999999999999999876
No 242
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.05 E-value=0.0074 Score=56.94 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=27.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEE
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 195 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 195 (932)
..||.|.|.+|.||||||+++.+.... ....+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~---~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA---RGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH---TTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEec
Confidence 368999999999999999999999842 234455554
No 243
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.04 E-value=0.04 Score=54.59 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=36.3
Q ss_pred CcccccccchH--HHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 132 TMATLAGEKTK--KVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 132 ~~~~~vGr~~~--~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
.-..++|.+.. ...+--..++.+-...-|.+||.-|+|||+|++++.+...
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH
Confidence 33678897442 2222333445555567789999999999999999999873
No 244
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.03 E-value=0.047 Score=66.66 Aligned_cols=172 Identities=15% Similarity=0.206 Sum_probs=87.4
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
..+.|. ++.++++.+.+. . ...+-|.++|++|+|||+||+.+++... ..| +.++.+
T Consensus 178 ~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~---~~~---i~i~~~--- 246 (733)
T TIGR01243 178 EDIGGL--KEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG---AYF---ISINGP--- 246 (733)
T ss_pred HHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC---CeE---EEEecH---
Confidence 457777 455555544432 1 1246788999999999999999998752 121 223221
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc-------------ccccccCCCCC-CCCC
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF-------------RLEEVGIPEPS-EENG 266 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~-~~~g 266 (932)
++.. .. ..........+++......+.+|++|+++... ....+...+.. ...+
T Consensus 247 ---~i~~----~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 247 ---EIMS----KY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred ---HHhc----cc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 1110 00 01112233444444445567899999985421 01111111111 1223
Q ss_pred cEEEE-EeCCcc-ccccc---c-cee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHH
Q 036714 267 CKLVV-TTRSVG-ICRSM---G-CKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLA 333 (932)
Q Consensus 267 s~iiv-TTR~~~-v~~~~---~-~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 333 (932)
..+|| ||.... +.... + -.. +.+...+.++-.+++......... . .......+++.+.|.--+
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l--~--~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL--A--EDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC--c--cccCHHHHHHhCCCCCHH
Confidence 34444 444322 21111 1 112 677777888888888755432211 1 112356688888886543
No 245
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.02 E-value=0.026 Score=59.39 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEE
Q 036714 144 VVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVV 191 (932)
Q Consensus 144 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~ 191 (932)
+-..-+++|.++++..|.+.|.+|.|||-||.+..=..-..+..|..+
T Consensus 232 eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 232 EQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred HHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 344457788999999999999999999999877654432233445443
No 246
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.02 E-value=0.057 Score=65.94 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=80.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+-|.++|++|+|||++|+++++... ..| +.+..+ ++ .... .......+..++.....
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~---~~f---i~v~~~------~l----~~~~------vGese~~i~~~f~~A~~ 544 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG---ANF---IAVRGP------EI----LSKW------VGESEKAIREIFRKARQ 544 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC---CCE---EEEehH------HH----hhcc------cCcHHHHHHHHHHHHHh
Confidence 45688999999999999999999752 222 222211 11 1111 01112234445555445
Q ss_pred CCeEEEEEecccccc---------c-----cccccCCCCC--CCCCcEEEEEeCCcccccc-----cccee-EeccCCCH
Q 036714 237 KEKFVLILDDMWEAF---------R-----LEEVGIPEPS--EENGCKLVVTTRSVGICRS-----MGCKE-VRVQPLSN 294 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~---------~-----~~~l~~~~~~--~~~gs~iivTTR~~~v~~~-----~~~~~-~~l~~L~~ 294 (932)
..+.+|++|+++... . ...+...+.. ...+--||.||...+.... ..-.. +.++..+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 678999999986320 0 1111111111 1234456667755443221 11223 78888888
Q ss_pred HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 295 EEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 295 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
++-.++|+.+......... .....+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~~~~~~----~~l~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAED----VDLEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCCCCCcc----CCHHHHHHHcCCCC
Confidence 8888898766543221111 12456777777755
No 247
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.01 E-value=0.21 Score=55.52 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=24.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...+|.++|+.|+||||+|..++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999998763
No 248
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.00 E-value=0.18 Score=57.90 Aligned_cols=198 Identities=16% Similarity=0.115 Sum_probs=111.7
Q ss_pred cccccchHHHHHHHHHHhc----C-CCeeEEEEEeCCCChHHHHHHHHHHHHhhc-----cCCCcEEEEEEECCccCHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLM----G-DKVTKIGVWGMGGIGKTTIMKEINNRLQKE-----TNKFNVVIWVTVSQPLYLIK 204 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~~wv~~s~~~~~~~ 204 (932)
.+-+| +.+..+|-.++. + +..+.+-|.|-+|+|||..+..|.+..+.. -..|+ .+.|+.-.-....+
T Consensus 397 sLpcR--e~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 397 SLPCR--ENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccch--hHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 45567 556666655553 3 335699999999999999999999976421 23453 34445444556778
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHh----cCCeEEEEEeccccc-----cccccccCCCCCCCCCcEEEEEeCC
Q 036714 205 LQTEIATALKQSLLENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA-----FRLEEVGIPEPSEENGCKLVVTTRS 275 (932)
Q Consensus 205 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTTR~ 275 (932)
+-..|..++......... .+..+-..+. ..+..+|++|+++.. +.+..+.. .+ ..++||++|.+=.
T Consensus 474 ~Y~~I~~~lsg~~~~~~~---al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-Wp-t~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDA---ALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-WP-TLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccCcccHHH---HHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc-CC-cCCCCceEEEEec
Confidence 888888888664322222 2222222222 345789999987531 22222211 11 2456776654421
Q ss_pred -----------ccccccccceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhh
Q 036714 276 -----------VGICRSMGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGC 340 (932)
Q Consensus 276 -----------~~v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 340 (932)
..++..++-..+..++-+.++-.++....+..-+.-.....+=++++|+.-.|-.-.|+.+.-++
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 12333444444777888888877777766544322122334445556665555555555544333
No 249
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.00 E-value=0.018 Score=66.93 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=37.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|. +..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGq--s~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQ--EEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCc--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 578998 5677777777766555667899999999999999998754
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.00 E-value=0.0016 Score=65.39 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=40.2
Q ss_pred ccccccccccccc--cccCCCC-ChhccccCcEeecccCCCcccc--cccccCCCCCEEeCCCCCCcccCC---CccCCC
Q 036714 562 DLMNLRSLLLRWC--ENLERVP-SLAKLLALQYLDLEETGIEEVP--EGMEMLENLSHLYLSSPRLKKFPT---GILPRL 633 (932)
Q Consensus 562 ~l~~L~~L~L~~~--~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~---~~l~~l 633 (932)
.|++|++|.++.| .....++ ...++++|++|++++|.|+.+. ..+..+.+|..|++..|....+.. .++.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4556666666655 3333344 3444566666666666544320 123445556666666655333221 224445
Q ss_pred CCcceEEee
Q 036714 634 RNLYKLKLS 642 (932)
Q Consensus 634 ~~L~~L~l~ 642 (932)
++|..|+-.
T Consensus 143 ~~L~~LD~~ 151 (260)
T KOG2739|consen 143 PSLKYLDGC 151 (260)
T ss_pred hhhcccccc
Confidence 555555433
No 251
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.95 E-value=0.042 Score=57.06 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=53.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhcc------ccccchHHHH---
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQS------LLENEDKVRR--- 226 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~--- 226 (932)
-.-++|+|..|+||||||+++++.... .+-+.++++-+++.. .+.++..++.+.-... ...+.....+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 467999999999999999999998742 223456666676654 3445555554321110 0011111111
Q ss_pred ---HHHHHHHHh-c-CCeEEEEEecccc
Q 036714 227 ---AGELLGMLK-A-KEKFVLILDDMWE 249 (932)
Q Consensus 227 ---~~~l~~~l~-~-~kr~LlVlDdv~~ 249 (932)
.....+.+. + ++.+|+++||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 111222221 3 8999999999865
No 252
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.93 E-value=0.016 Score=71.60 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=40.8
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 198 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 198 (932)
..++|. +..++.+...+.. . ...++.++|++|+|||++|+.+..... ......+.++.+.
T Consensus 565 ~~v~GQ--~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~---~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQ--DEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF---DDEDAMVRIDMSE 633 (852)
T ss_pred cccCCC--hHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc---CCCCcEEEEechh
Confidence 468887 5566777666642 1 146788999999999999999998762 2223344455443
No 253
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.86 E-value=0.023 Score=60.75 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=51.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcccc-----ccchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL-----ENEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 231 (932)
-+++-|+|++|+||||||.+++..... ....++|++....++.. .+++++.+.. ...+..+....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 478899999999999999998877632 34568899877766643 3344433211 1111222222222
Q ss_pred HHHhcCCeEEEEEeccc
Q 036714 232 GMLKAKEKFVLILDDMW 248 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~ 248 (932)
.....+..-+||+|.|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 22224556799999975
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.85 E-value=0.0085 Score=58.72 Aligned_cols=73 Identities=33% Similarity=0.404 Sum_probs=42.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
..-+.++|.+|+|||.||.++.+.... ..+ .+.|+. ..+++..+ ...... .. ..+.++.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~-~v~f~~------~~~L~~~l----~~~~~~-~~----~~~~~~~l~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KGY-SVLFIT------ASDLLDEL----KQSRSD-GS----YEELLKRLK- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEE------HHHHHHHH----HCCHCC-TT----HCHHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CCc-ceeEee------cCceeccc----cccccc-cc----hhhhcCccc-
Confidence 467999999999999999999998732 233 456664 33344443 322111 11 122334443
Q ss_pred CCeEEEEEecccc
Q 036714 237 KEKFVLILDDMWE 249 (932)
Q Consensus 237 ~kr~LlVlDdv~~ 249 (932)
+-=||||||+-.
T Consensus 108 -~~dlLilDDlG~ 119 (178)
T PF01695_consen 108 -RVDLLILDDLGY 119 (178)
T ss_dssp -TSSCEEEETCTS
T ss_pred -cccEecccccce
Confidence 345788999854
No 255
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.83 E-value=0.11 Score=56.76 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=42.5
Q ss_pred HHHHHHHhcC---CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEE----EECCccCHHHHHHHHHHHHh
Q 036714 145 VEEIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV----TVSQPLYLIKLQTEIATALK 214 (932)
Q Consensus 145 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv----~~s~~~~~~~~~~~i~~~l~ 214 (932)
.+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+........--.+++. ......-...++.+|..++.
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 3444455543 4688999999999999999999999884331111123333 22222234455556655553
No 256
>PRK06696 uridine kinase; Validated
Probab=95.82 E-value=0.014 Score=59.94 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhc---CCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 142 KKVVEEIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 142 ~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++.+++|.+.+. .+...+|+|.|.+|+||||||+.+.+..
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555553 4568899999999999999999999987
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.034 Score=57.93 Aligned_cols=82 Identities=26% Similarity=0.312 Sum_probs=49.8
Q ss_pred HHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHH
Q 036714 147 EIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRR 226 (932)
Q Consensus 147 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 226 (932)
.+..++. ...-+.++|.+|+|||.||.++.+... . ..-.+.+++ ..++..++...... ...
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~------~~el~~~Lk~~~~~-----~~~--- 157 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFIT------APDLLSKLKAAFDE-----GRL--- 157 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEE------HHHHHHHHHHHHhc-----Cch---
Confidence 3344444 567899999999999999999999984 2 233456664 34455555444332 111
Q ss_pred HHHHHHHHhcCCeEEEEEecccc
Q 036714 227 AGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 227 ~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
..++.+.+ .+-=||||||+-.
T Consensus 158 ~~~l~~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 158 EEKLLREL--KKVDLLIIDDIGY 178 (254)
T ss_pred HHHHHHHh--hcCCEEEEecccC
Confidence 11222222 2345899999853
No 258
>PRK09354 recA recombinase A; Provisional
Probab=95.81 E-value=0.028 Score=60.54 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=53.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcccc-----ccchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL-----ENEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 231 (932)
-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++.+.. ......+....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 47899999999999999999988763 234678899887776653 3444443311 1111222222222
Q ss_pred HHHhcCCeEEEEEecccc
Q 036714 232 GMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~~ 249 (932)
.....+..-+||+|.|-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 222245667999999853
No 259
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.81 E-value=0.044 Score=56.05 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=32.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY 201 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 201 (932)
-.++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 58899999999999999999998763 2334677887655443
No 260
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.80 E-value=0.0054 Score=59.53 Aligned_cols=151 Identities=18% Similarity=0.137 Sum_probs=73.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccch--HHHHHHHHHHHHhc
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENED--KVRRAGELLGMLKA 236 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~l~~~l~~ 236 (932)
+|.|.|.+|+||||+|..+...... .++++.....+ ..+..+.|............. ....+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~------~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL------QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC------CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 6899999999999999999876411 23445444433 334555554443322111111 01112233333222
Q ss_pred CCeEEEEEeccccc----------cccc----cccCCCCCCCCCcEEEEEeCCccccccccceeEeccCCCHHHHHHHHH
Q 036714 237 KEKFVLILDDMWEA----------FRLE----EVGIPEPSEENGCKLVVTTRSVGICRSMGCKEVRVQPLSNEEALNLFL 302 (932)
Q Consensus 237 ~kr~LlVlDdv~~~----------~~~~----~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~l~~L~~~~~~~lf~ 302 (932)
+.-++++|.+... ..+. .+...+. ..+..+|+|+... -.+..+.++.-..|.
T Consensus 76 -~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~Ev-----------g~g~vp~~~~~r~~~ 141 (170)
T PRK05800 76 -PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNEV-----------GMGIVPEYRLGRHFR 141 (170)
T ss_pred -CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcCC-----------cccccCCCHHHHHHH
Confidence 2337889987321 1111 1222222 3455577776532 222334445556676
Q ss_pred HhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 303 DKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
..+|.- ...+...+.++.....|+|+-+
T Consensus 142 d~lG~l----nq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAGRL----NQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHHHH----HHHHHHHCCEEEEEeCCCcEec
Confidence 665542 2233333444444445777643
No 261
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.80 E-value=0.018 Score=70.92 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=34.8
Q ss_pred ccccccchHHHHHHHHHHhcC-------CC--eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG-------DK--VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. +..++.+...+.. .+ ..++.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ--~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQ--DEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcCh--HHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 567887 6677777666531 11 3567799999999999999999876
No 262
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.79 E-value=0.052 Score=55.89 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=50.2
Q ss_pred HHHHHHHHhcC--CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccc
Q 036714 144 VVEEIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENE 221 (932)
Q Consensus 144 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 221 (932)
.+..+.++..+ .....+.++|.+|+|||+||.++++.... ....+++++ ..++...+-..... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it------~~~l~~~l~~~~~~---~~~ 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT------VADIMSAMKDTFSN---SET 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE------HHHHHHHHHHHHhh---ccc
Confidence 44444444432 22357899999999999999999998742 233456664 33444444333211 011
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEecccc
Q 036714 222 DKVRRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 222 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
. ...+++.+ . +.=+||+||+..
T Consensus 152 ~----~~~~l~~l-~-~~dlLvIDDig~ 173 (244)
T PRK07952 152 S----EEQLLNDL-S-NVDLLVIDEIGV 173 (244)
T ss_pred c----HHHHHHHh-c-cCCEEEEeCCCC
Confidence 1 11233334 2 345888999964
No 263
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.75 E-value=0.02 Score=61.08 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=24.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+..++|+|++|+|||.+|+++++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 36889999999999999999999987
No 264
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.75 E-value=0.057 Score=58.45 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=43.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhc---cCCCcEEEEEEECCccCHHHHHHHHHHHHhcc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLYLIKLQTEIATALKQS 216 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 216 (932)
-+++-|+|.+|+|||+|+.+++-..+.. ...-..++|++....|...++.+ +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4788899999999999999987543211 12235799999999999888754 56666543
No 265
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.74 E-value=0.037 Score=52.51 Aligned_cols=115 Identities=22% Similarity=0.155 Sum_probs=59.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC---ccCHHHHHHHHHHHH-----hcc--c--cccchHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLYLIKLQTEIATAL-----KQS--L--LENEDKVR 225 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~--~--~~~~~~~~ 225 (932)
+.|-|++..|.||||+|...+-+.. .+--.+.++..-. ...-..+++.+ ..+ +.. + .+......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 5788999999999999999888763 3333455543322 23333333332 000 000 0 00111111
Q ss_pred HH----HHHHHHHhcCCeEEEEEeccccc-----cccccccCCCCCCCCCcEEEEEeCCc
Q 036714 226 RA----GELLGMLKAKEKFVLILDDMWEA-----FRLEEVGIPEPSEENGCKLVVTTRSV 276 (932)
Q Consensus 226 ~~----~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTTR~~ 276 (932)
.. ....+.+..++-=|||||++-.. .+.+++...+.....+.-||+|.|+.
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11 11222233445569999998532 22333333333334567899999984
No 266
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.72 E-value=0.077 Score=57.55 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=42.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhc--c-CCCcEEEEEEECCccCHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKE--T-NKFNVVIWVTVSQPLYLIKLQTEIATALKQ 215 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 215 (932)
-.++-|+|.+|+|||+|+..++-..... . ..-..++|++....+..+++ .+|++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 5788899999999999999888543211 1 12237999999999988877 455666654
No 267
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.72 E-value=0.045 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHh
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
++.++|++|+||||++..++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998873
No 268
>PTZ00035 Rad51 protein; Provisional
Probab=95.71 E-value=0.097 Score=56.94 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=41.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhh---ccCCCcEEEEEEECCccCHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVSQPLYLIKLQTEIATALKQ 215 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 215 (932)
-.++.|+|.+|+|||+|+..++-..+. ....-..++|++....+...++ .++++.++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 588999999999999999998765421 1112346789988877777775 445555543
No 269
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.69 E-value=0.027 Score=68.42 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=33.7
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. +..++.+...+.. . ...++.++|+.|+|||+||+.+++..
T Consensus 454 ~~v~GQ--~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQ--DEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCc--HHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 457776 4566666555531 1 24578999999999999999999876
No 270
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.69 E-value=0.029 Score=69.03 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=33.8
Q ss_pred ccccccchHHHHHHHHHHhc-------CCC--eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM-------GDK--VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~-------~~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. +..++.+...+. +.+ ..++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ--~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQ--NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCC--HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467887 556666655543 111 3578999999999999999999876
No 271
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.67 E-value=0.052 Score=57.65 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=47.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-cCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
.++|+|+|++|+||||++..++...... ..-..+..++.... ....+-+....+.++.+.....+. ......++.+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~-~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~-~~l~~~l~~~- 270 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLE-HGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDP-KELRKALDRL- 270 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH-cCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCH-HHHHHHHHHc-
Confidence 5799999999999999999999877322 11134555554321 122333334444444443222222 2233344444
Q ss_pred cCCeEEEEEecc
Q 036714 236 AKEKFVLILDDM 247 (932)
Q Consensus 236 ~~kr~LlVlDdv 247 (932)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 22 346777753
No 272
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.039 Score=60.25 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=51.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
..++.++|+.|+||||++.+++...... .....+..++... .....+-++..++.++.+.....+..+ ....+..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~-l~~~l~~l- 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR-FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-LQLALAEL- 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc-HHHHHHHh-
Confidence 4799999999999999999999876322 1223556555322 223445556666666665432222111 22223333
Q ss_pred cCCeEEEEEeccc
Q 036714 236 AKEKFVLILDDMW 248 (932)
Q Consensus 236 ~~kr~LlVlDdv~ 248 (932)
.+ +=+|++|..-
T Consensus 214 ~~-~DlVLIDTaG 225 (374)
T PRK14722 214 RN-KHMVLIDTIG 225 (374)
T ss_pred cC-CCEEEEcCCC
Confidence 33 3556689874
No 273
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.021 Score=67.26 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=88.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccC-----CCcEEEEEEECCccCHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN-----KFNVVIWVTVSQPLYLIKLQTE 208 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~s~~~~~~~~~~~ 208 (932)
..++|| ++++.++++.|....-.--.++|.+|+|||++|.-++.+.. ..+ ....++-.+
T Consensus 170 DPvIGR--d~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv-~g~VP~~L~~~~i~sLD------------- 233 (786)
T COG0542 170 DPVIGR--DEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV-NGDVPESLKDKRIYSLD------------- 233 (786)
T ss_pred CCCcCh--HHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh-cCCCCHHHcCCEEEEec-------------
Confidence 578999 88999999999754433345789999999999998888762 111 011111111
Q ss_pred HHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------ccccccCCCCCCCCCcEEEEEeCCcc-
Q 036714 209 IATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------RLEEVGIPEPSEENGCKLVVTTRSVG- 277 (932)
Q Consensus 209 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~iivTTR~~~- 277 (932)
+..-.. ...-..+-.+++..++..+.+.++.+|++|.++..- +...+..|.-..+.--.|-.||-++.
T Consensus 234 ~g~LvA-GakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYR 312 (786)
T COG0542 234 LGSLVA-GAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYR 312 (786)
T ss_pred HHHHhc-cccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHH
Confidence 111111 111123445677777777776669999999987521 11222222221122223555665421
Q ss_pred --c----cccccceeEeccCCCHHHHHHHHHHh
Q 036714 278 --I----CRSMGCKEVRVQPLSNEEALNLFLDK 304 (932)
Q Consensus 278 --v----~~~~~~~~~~l~~L~~~~~~~lf~~~ 304 (932)
+ |-...-..+.+..-+.+++..+++..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 1 11111122888999999999988754
No 274
>PRK06547 hypothetical protein; Provisional
Probab=95.64 E-value=0.015 Score=56.47 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 148 IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 148 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+...+......+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556678999999999999999999999874
No 275
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.62 E-value=0.074 Score=57.67 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=41.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEEEEECCccCHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLYLIKLQTEIATALK 214 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 214 (932)
-.++-|+|.+|+|||+++.+++-...... ..-..++||+....++..++. ++++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 58889999999999999999987652110 112379999998888887764 4455444
No 276
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.61 E-value=0.063 Score=57.54 Aligned_cols=100 Identities=22% Similarity=0.240 Sum_probs=57.5
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
..+-+.++|..|+|||.||.++++.... ..+ .+.++++ .+++.++....... . ..+.+..+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~--~g~-~v~~~~~------~~l~~~lk~~~~~~-----~----~~~~l~~l- 215 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAK--KGV-SSTLLHF------PEFIRELKNSISDG-----S----VKEKIDAV- 215 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH--cCC-CEEEEEH------HHHHHHHHHHHhcC-----c----HHHHHHHh-
Confidence 3567999999999999999999999842 233 3555544 34555554443211 1 12233333
Q ss_pred cCCeEEEEEecccc--ccccc--cccCCC-CCC-CCCcEEEEEeCC
Q 036714 236 AKEKFVLILDDMWE--AFRLE--EVGIPE-PSE-ENGCKLVVTTRS 275 (932)
Q Consensus 236 ~~kr~LlVlDdv~~--~~~~~--~l~~~~-~~~-~~gs~iivTTR~ 275 (932)
.+-=||||||+.. ...|. ++...+ ... ..+-.+|+||.-
T Consensus 216 -~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 216 -KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 2456899999953 23343 232222 111 234458888873
No 277
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.11 Score=56.36 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+.++|+.|+||||+|+.+++..
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999886
No 278
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.59 E-value=0.053 Score=58.41 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=40.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhc--c-CCCcEEEEEEECCccCHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKE--T-NKFNVVIWVTVSQPLYLIKLQTEIATALKQ 215 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 215 (932)
-.++.|+|.+|+|||+|+..++...... . .....++|++....+...++ .++++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 5889999999999999999988643211 1 12246799998887777764 445555443
No 279
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.00067 Score=67.93 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=44.0
Q ss_pred CCceeEEEccCCCCcccCccccccccccccccccccccCCCCChhccccCcEeecccCCCccccc--ccccCCCCCEEeC
Q 036714 540 MHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPE--GMEMLENLSHLYL 617 (932)
Q Consensus 540 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l 617 (932)
+.+.+.|++-||.+..+.- ...++.|++|.|+- +.++.+..+..+++|+.|.|+.|.|..+.+ .+.++++|+.|-|
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3455566666666665432 23466666666665 335555556666666666666665554422 2344555555555
Q ss_pred CCCC
Q 036714 618 SSPR 621 (932)
Q Consensus 618 ~~~~ 621 (932)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 4443
No 280
>PHA00729 NTP-binding motif containing protein
Probab=95.59 E-value=0.016 Score=58.15 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=28.7
Q ss_pred HHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 147 EIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 147 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666789999999999999999999975
No 281
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.56 E-value=0.038 Score=54.35 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=28.0
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEE
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 194 (932)
...+|.++|+.|+||||+|+.+++... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~---~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK---LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEE
Confidence 357999999999999999999999873 234444444
No 282
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.56 E-value=0.019 Score=54.75 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
-..+.++|++|.|||||.+.+|...+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 46899999999999999999998863
No 283
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.035 Score=51.57 Aligned_cols=45 Identities=31% Similarity=0.348 Sum_probs=34.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccc
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSL 217 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 217 (932)
+|.|-|++|+||||+|+.++++..- .+ + +...+.++|++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl--~~------v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL--KL------V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC--ce------e------eccHHHHHHHHHcCCCH
Confidence 6899999999999999999998721 11 1 23357788888877654
No 284
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.019 Score=53.33 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=22.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
--|+|.|++|+||||+++.+.+..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4689999999999999999999884
No 285
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.52 E-value=0.095 Score=58.79 Aligned_cols=87 Identities=25% Similarity=0.265 Sum_probs=49.6
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHhcccccc---chHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALKQSLLEN---EDKVRRAGELL 231 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~ 231 (932)
.+.+|.++|.+|+||||+|..++..... ..+ .+.-|+... .....+.++.++++++.+.... .+....+...+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~--~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK--KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH--cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4689999999999999999999988742 223 344444322 1223444566666665543221 12222233333
Q ss_pred HHHhcCCeEEEEEecc
Q 036714 232 GMLKAKEKFVLILDDM 247 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv 247 (932)
+... +. =+||+|..
T Consensus 171 ~~~~-~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFK-KA-DVIIVDTA 184 (437)
T ss_pred HHhh-cC-CEEEEECC
Confidence 3332 22 56777876
No 286
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.52 E-value=0.079 Score=52.94 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=29.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCC-------cEEEEEEECCc
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKF-------NVVIWVTVSQP 199 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~s~~ 199 (932)
.++.|.|++|+||||++.+++.........+ ..++|++...+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5889999999999999999999875322222 36788876655
No 287
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.43 Score=54.57 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=44.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
..+-|..+|++|+|||++|+++++... -.| ++++.+ ++. .... .+....+.++++...
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~---~nF-----lsvkgp----EL~----sk~v------GeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAG---MNF-----LSVKGP----ELF----SKYV------GESERAIREVFRKAR 524 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhc---CCe-----eeccCH----HHH----HHhc------CchHHHHHHHHHHHh
Confidence 468899999999999999999999862 233 333321 111 1111 111223444454444
Q ss_pred cCCeEEEEEecccc
Q 036714 236 AKEKFVLILDDMWE 249 (932)
Q Consensus 236 ~~kr~LlVlDdv~~ 249 (932)
+-.+.+|.||.++.
T Consensus 525 ~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDA 538 (693)
T ss_pred hcCCeEEehhhHHh
Confidence 55678999998864
No 288
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.48 E-value=0.084 Score=57.31 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=41.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEEEEECCccCHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLYLIKLQTEIATALK 214 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 214 (932)
-.++-|+|++|+|||+++.+++-...... ..-..++|++....++..++. ++++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 57889999999999999999987642211 112479999998888887765 4445544
No 289
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.46 E-value=0.016 Score=65.45 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=39.6
Q ss_pred ccccccchHHHHHHHHHHh------cCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDL------MGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. ++.+++|++.+ .+..-+++.++|++|+||||||+.+++-.
T Consensus 76 ~d~yGl--ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGM--EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCc--HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 467888 78889998888 34456899999999999999999999987
No 290
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.2 Score=49.72 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=72.9
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
.++-+.++|++|.|||-||++|+++- ...|+.||...- +++-|. +. ...+.+++--..
T Consensus 180 QPKGvlLygppgtGktLlaraVahht--------~c~firvsgsel---vqk~ig---------eg--srmvrelfvmar 237 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSEL---VQKYIG---------EG--SRMVRELFVMAR 237 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHHH---HHHHhh---------hh--HHHHHHHHHHHH
Confidence 46778999999999999999999874 245566665321 111111 11 122333433333
Q ss_pred cCCeEEEEEeccccccc------------c----ccccCCCC--CCCCCcEEEEEeCCcccccc-----cccee-EeccC
Q 036714 236 AKEKFVLILDDMWEAFR------------L----EEVGIPEP--SEENGCKLVVTTRSVGICRS-----MGCKE-VRVQP 291 (932)
Q Consensus 236 ~~kr~LlVlDdv~~~~~------------~----~~l~~~~~--~~~~gs~iivTTR~~~v~~~-----~~~~~-~~l~~ 291 (932)
...+-+|..|.++.... . -++...+. ...+.-|||+.|..-++... ...+. ++.++
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 45688999998864210 0 01111222 12345688888876555432 22222 77777
Q ss_pred CCHHHHHHHHHHhh
Q 036714 292 LSNEEALNLFLDKV 305 (932)
Q Consensus 292 L~~~~~~~lf~~~~ 305 (932)
-+++.-.++++-+.
T Consensus 318 p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 318 PNEEARLDILKIHS 331 (404)
T ss_pred CCHHHHHHHHHHhh
Confidence 77777667776443
No 291
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.45 E-value=0.046 Score=62.71 Aligned_cols=49 Identities=35% Similarity=0.439 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcC-----CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEE
Q 036714 142 KKVVEEIWEDLMG-----DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 195 (932)
Q Consensus 142 ~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 195 (932)
.+.++++..||.. ...+++.+.|++|+||||.++.+++.. .|+.+-|.+
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 4456777777753 235799999999999999999999875 567777864
No 292
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.44 E-value=0.013 Score=54.17 Aligned_cols=22 Identities=59% Similarity=0.904 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|+|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999884
No 293
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.42 E-value=0.083 Score=55.65 Aligned_cols=89 Identities=25% Similarity=0.277 Sum_probs=48.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH--HHHHHHHHHHhcccc---ccchHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI--KLQTEIATALKQSLL---ENEDKVRRAGEL 230 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~---~~~~~~~~~~~l 230 (932)
..++|.++|++|+||||++..++..... ....+..++.. .+... +-+...++..+.... ...+........
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~---~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK---QGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3589999999999999999999987732 22355666533 23222 223344555543321 111222222222
Q ss_pred HHHHhcCCeEEEEEeccc
Q 036714 231 LGMLKAKEKFVLILDDMW 248 (932)
Q Consensus 231 ~~~l~~~kr~LlVlDdv~ 248 (932)
++....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 222223334577888763
No 294
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.39 E-value=0.014 Score=58.40 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=22.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHh
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
||+|.|++|+||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999999884
No 295
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.36 E-value=0.065 Score=48.15 Aligned_cols=50 Identities=28% Similarity=0.346 Sum_probs=34.8
Q ss_pred ccccccch--HHHHHHHHHHhcC---CCeeEEEEEeCCCChHHHHHHHHHHHHhh
Q 036714 134 ATLAGEKT--KKVVEEIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRLQK 183 (932)
Q Consensus 134 ~~~vGr~~--~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 183 (932)
..++|... +..+..|.+.+.. .++=|++.+|.+|+|||.+++.+++..-+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 46777633 2233444444443 34779999999999999999999998533
No 296
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.36 E-value=0.93 Score=49.56 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=40.0
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE-CCccCHHHHHHHHHHHHhcccc
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV-SQPLYLIKLQTEIATALKQSLL 218 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~ 218 (932)
.+.||-.+|.-|.||||-|-.+++.+.+ ..+. +.-|++ ...+...+-++.++++.+.+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK--KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH--cCCc-eEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 3689999999999999999999999843 2222 222221 2223344556777888776543
No 297
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.33 E-value=0.13 Score=53.38 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=34.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTE 208 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 208 (932)
-+++.|.|.+|+|||++|.++..... .....++|++... +..++.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHH
Confidence 58999999999999999999876642 2345688888765 34444444
No 298
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.043 Score=62.54 Aligned_cols=73 Identities=22% Similarity=0.162 Sum_probs=50.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc--CHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL--YLIKLQTEIATALKQSLLENEDKVRRAGELLGML 234 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 234 (932)
..-|.|.|+.|+|||+||+++++... ++...++.+|+++.-. .++.+++.+-.. +..-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v------------------fse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV------------------FSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHH------------------HHHH
Confidence 46789999999999999999999874 5677778888776543 233333332211 1111
Q ss_pred hcCCeEEEEEecccc
Q 036714 235 KAKEKFVLILDDMWE 249 (932)
Q Consensus 235 ~~~kr~LlVlDdv~~ 249 (932)
..-.+-+|||||++.
T Consensus 491 ~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDC 505 (952)
T ss_pred HhhCCcEEEEcchhh
Confidence 244689999999863
No 299
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.33 E-value=0.09 Score=62.75 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=67.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAK 237 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 237 (932)
+-|.++|++|+|||++|+.+++... ..| +.++.++ +.. +. .+ ........++......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~---~~f---~~is~~~------~~~-~~--~g-------~~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAK---VPF---FTISGSD------FVE-MF--VG-------VGASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcC---CCE---EEEehHH------hHH-hh--hc-------ccHHHHHHHHHHHHhc
Confidence 4599999999999999999988752 222 2222221 110 00 00 0111223333333345
Q ss_pred CeEEEEEeccccccc----------------cccccCCCCC--CCCCcEEEEEeCCccccccc-----ccee-EeccCCC
Q 036714 238 EKFVLILDDMWEAFR----------------LEEVGIPEPS--EENGCKLVVTTRSVGICRSM-----GCKE-VRVQPLS 293 (932)
Q Consensus 238 kr~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~iivTTR~~~v~~~~-----~~~~-~~l~~L~ 293 (932)
.+.+|++|+++.... +..+...+.. ...+.-||.||...+..... .-.. +.+..-+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 689999999865310 1111111111 12344555677665432211 1122 7777777
Q ss_pred HHHHHHHHHHhhCC
Q 036714 294 NEEALNLFLDKVGS 307 (932)
Q Consensus 294 ~~~~~~lf~~~~~~ 307 (932)
.++-.+++..++..
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 78888888777654
No 300
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.31 E-value=0.014 Score=47.00 Aligned_cols=23 Identities=35% Similarity=0.578 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 301
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.083 Score=57.39 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=46.8
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC--HHHHHHHHHHHHhccccccchHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY--LIKLQTEIATALKQSLLENEDKVRRAGELLGM 233 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 233 (932)
..++|+++|++|+||||++..++..... .. ..+..++.. ++. ..+-++..++.++.+.....+.. .+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~--~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~-~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG--KK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEA-AMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH--cC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHH-HHHHHHHH
Confidence 3579999999999999999999987632 22 234445432 222 22223344444444432222222 22233333
Q ss_pred HhcC-CeEEEEEeccc
Q 036714 234 LKAK-EKFVLILDDMW 248 (932)
Q Consensus 234 l~~~-kr~LlVlDdv~ 248 (932)
+... +.=+|++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23466778763
No 302
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.27 E-value=0.06 Score=56.38 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=62.2
Q ss_pred CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcccc-c------cchHHHH
Q 036714 154 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL-E------NEDKVRR 226 (932)
Q Consensus 154 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~------~~~~~~~ 226 (932)
..+..-++|+|+.|.|||||.+.++.... .....+++...+-... +-..+++.....-.+ . ..+....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchH
Confidence 34467899999999999999999998762 2222333321111000 111233322211000 0 0000111
Q ss_pred HHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCccc
Q 036714 227 AGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGI 278 (932)
Q Consensus 227 ~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v 278 (932)
...+........+=++++|.+...+.+..+...+. .|..||+||.+..+
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 22223333334688999999977665555543332 47789999987544
No 303
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.24 E-value=0.061 Score=52.90 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=64.9
Q ss_pred HHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHh----------ccc
Q 036714 148 IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALK----------QSL 217 (932)
Q Consensus 148 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~----------~~~ 217 (932)
++..+-+....-..|.|++|+|||||.+.+++-.+.....|-..--+-+... .+|+..+. .+.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer-------sEIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER-------SEIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc-------chhhccccCCchhhhhhhhhh
Confidence 5555555555557899999999999999999987544444443222211111 12222111 011
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCcc
Q 036714 218 LENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVG 277 (932)
Q Consensus 218 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~ 277 (932)
.+.....+.+-...+ .-.+=++|+|.+-..++...+...+ ..|-++|.|..-..
T Consensus 201 ld~cpk~~gmmmaIr---sm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ 254 (308)
T COG3854 201 LDPCPKAEGMMMAIR---SMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNG 254 (308)
T ss_pred cccchHHHHHHHHHH---hcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecccc
Confidence 111222222222233 3457799999998876655544333 46888877765433
No 304
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.22 E-value=0.11 Score=54.25 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=55.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH-Hhc---ccccc-chHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA-LKQ---SLLEN-EDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~---~~~~~-~~~~~~~~~l~ 231 (932)
-+++=|+|+.|.||||+|.+++-..+ .....++|++.-..+++..+. +++.. +.. ..... ......+..+.
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq---~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQ---KPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhh---cCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 47888999999999999999988763 233488999999999888774 34444 221 11111 12222233333
Q ss_pred HHHhcCCeEEEEEeccc
Q 036714 232 GMLKAKEKFVLILDDMW 248 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~ 248 (932)
+.. ..+--|+|+|.|-
T Consensus 136 ~~~-~~~i~LvVVDSva 151 (279)
T COG0468 136 RSG-AEKIDLLVVDSVA 151 (279)
T ss_pred Hhc-cCCCCEEEEecCc
Confidence 322 2235688888874
No 305
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.19 E-value=0.02 Score=57.52 Aligned_cols=43 Identities=33% Similarity=0.395 Sum_probs=25.6
Q ss_pred ChhccccCcEeecccCCCc-cccc----ccccCCCCCEEeCCCCCCcc
Q 036714 582 SLAKLLALQYLDLEETGIE-EVPE----GMEMLENLSHLYLSSPRLKK 624 (932)
Q Consensus 582 ~~~~l~~L~~L~l~~~~i~-~lp~----~~~~l~~L~~L~l~~~~l~~ 624 (932)
.+-++++|++.+||.|-+. +.|+ -+++-+.|.||.+++|.+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 3455667777777777443 3333 34555677777777766443
No 306
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.14 E-value=0.051 Score=51.00 Aligned_cols=42 Identities=29% Similarity=0.280 Sum_probs=31.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQT 207 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 207 (932)
|.++|++|+|||+||+.+++... ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEecccccccccee
Confidence 67899999999999999999861 2345567788777776653
No 307
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.14 E-value=0.019 Score=54.21 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
||.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 308
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.068 Score=58.80 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++.++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 309
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.12 E-value=0.11 Score=53.50 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=32.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
..++.|.|.+|+||||+|.+++....+ .. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ--NG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEeCCC--CHHHHHHHH
Confidence 469999999999999998777665422 22 3456666333 445555554
No 310
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.10 E-value=0.021 Score=58.04 Aligned_cols=27 Identities=41% Similarity=0.528 Sum_probs=24.4
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999876
No 311
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.10 E-value=0.11 Score=52.29 Aligned_cols=86 Identities=20% Similarity=0.348 Sum_probs=52.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-cCHHHHHHHHHHHHhc-------cccccchHH----
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LYLIKLQTEIATALKQ-------SLLENEDKV---- 224 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~---- 224 (932)
-.-++|.|.+|+|||+|+.++.+.. .-+.++++.+++. ..+.++.+++...-.. ...++....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 3678999999999999999999975 2344577777655 3455555555332111 111111111
Q ss_pred ----HHHHHHHHHHhcCCeEEEEEecccc
Q 036714 225 ----RRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 225 ----~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
-...+.++. +++.+|+++||+..
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhHH
Confidence 111222222 68999999999854
No 312
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.08 E-value=0.043 Score=60.05 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=33.3
Q ss_pred ccccccchHHHHHHHHHHhcCC--------------CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGD--------------KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. ++.++.+.-++... ..+-|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ--~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQ--DNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCH--HHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457787 55555554333321 24678999999999999999999986
No 313
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.07 E-value=0.049 Score=65.50 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=34.7
Q ss_pred ccccccchHHHHHHHHHHhcC--------C-CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG--------D-KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. ++.++.|...+.. + ....+.++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ--~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQ--DKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCc--HHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 457887 5566666666541 1 24678999999999999999999876
No 314
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.043 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|.|.|++|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 315
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.05 E-value=0.027 Score=57.48 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|.|+|++|+||||+|+.+++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 316
>PRK08233 hypothetical protein; Provisional
Probab=95.05 E-value=0.018 Score=56.97 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=23.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999876
No 317
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.04 E-value=0.098 Score=49.69 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999986
No 318
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.0025 Score=64.05 Aligned_cols=97 Identities=27% Similarity=0.229 Sum_probs=67.6
Q ss_pred CCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC---ChhccccCcE
Q 036714 515 CDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP---SLAKLLALQY 591 (932)
Q Consensus 515 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp---~~~~l~~L~~ 591 (932)
+.+.+.|++.+| .+.+|. +...|+.|.+|.||-|.|+.+-. +..|++|+.|.|+.|. +.++. -+.++++|++
T Consensus 18 l~~vkKLNcwg~-~L~DIs--ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS--ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCC-CccHHH--HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhh
Confidence 345666777777 666554 34688888888888888887753 6788888888888743 44444 3778888888
Q ss_pred eecccCCCcc-cc-----cccccCCCCCEEe
Q 036714 592 LDLEETGIEE-VP-----EGMEMLENLSHLY 616 (932)
Q Consensus 592 L~l~~~~i~~-lp-----~~~~~l~~L~~L~ 616 (932)
|.|..|.... -+ ..+.-|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888874431 11 1345678888876
No 319
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.07 Score=57.39 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=56.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLEN-EDKVRRAGELLGMLK 235 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~ 235 (932)
-.+|.|-|-+|+|||||..+++.+... .. .+.+|+..+...-. +--++.|+.....- --....+..+.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~---~~-~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAK---RG-KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHh---cC-cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 489999999999999999999999843 22 78888766654322 22355565432110 011223344555555
Q ss_pred cCCeEEEEEecccc
Q 036714 236 AKEKFVLILDDMWE 249 (932)
Q Consensus 236 ~~kr~LlVlDdv~~ 249 (932)
..++-++|+|-+..
T Consensus 166 ~~~p~lvVIDSIQT 179 (456)
T COG1066 166 QEKPDLVVIDSIQT 179 (456)
T ss_pred hcCCCEEEEeccce
Confidence 67899999999864
No 320
>PRK10867 signal recognition particle protein; Provisional
Probab=95.04 E-value=0.11 Score=58.01 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.7
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
.+.+|.++|++|+||||.|..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 368999999999999999999988763
No 321
>PRK06217 hypothetical protein; Validated
Probab=95.02 E-value=0.034 Score=55.01 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=26.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEE
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 194 (932)
.|.|.|.+|+||||+|+++.+......-+.|..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 489999999999999999998863211122445553
No 322
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.01 E-value=0.024 Score=56.84 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=54.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY--LIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
++|.|+|+.|.||||++..+..... ......++.- .++.. .... ..+..+-. . ..+ .......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t~-e~~~E~~~~~~-~~~i~q~~--v--g~~-~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILTI-EDPIEFVHESK-RSLINQRE--V--GLD-TLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEEE-cCCccccccCc-cceeeecc--c--CCC-ccCHHHHHHHHh
Confidence 5789999999999999999888763 2222233321 11110 0000 00110000 0 000 111222333333
Q ss_pred cCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCccc
Q 036714 236 AKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGI 278 (932)
Q Consensus 236 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v 278 (932)
+..+=++++|++.+.+.+..+.... ..|..++.|+-..++
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 4457799999998766544332221 235557777765443
No 323
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.98 E-value=0.11 Score=57.22 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=51.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc-CCCcEEEEEEECCc-cCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQP-LYLIKLQTEIATALKQSLLENEDKVRRAGELLGML 234 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 234 (932)
.++|.++|+.|+||||.+..++....... ..-..+..++.... ....+-++..++.++.+....... ......+..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~-~~l~~~L~~~ 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESF-KDLKEEITQS 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcH-HHHHHHHHHh
Confidence 57999999999999999999998764221 12234555554331 122233556666666654332222 2223333333
Q ss_pred hcCCeEEEEEeccc
Q 036714 235 KAKEKFVLILDDMW 248 (932)
Q Consensus 235 ~~~kr~LlVlDdv~ 248 (932)
.+.-+|++|..-
T Consensus 253 --~~~DlVLIDTaG 264 (388)
T PRK12723 253 --KDFDLVLVDTIG 264 (388)
T ss_pred --CCCCEEEEcCCC
Confidence 345688889874
No 324
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.97 E-value=0.11 Score=53.86 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=35.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTE 208 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 208 (932)
-+++.|+|.+|+|||++|.++..... ..-..++|++..+. ..++.+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHH
Confidence 58999999999999999999976542 23457888888654 3445444
No 325
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=0.12 Score=56.00 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=51.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-cCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
.+++.++|+.|+||||++..++..... ....+.+++.... ....+-++..++.++.+.....+..+ +...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~---~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~d-L~~al~~l~ 281 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLK---QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAE-LEEAVQYMT 281 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHH-HHHHHHHHH
Confidence 589999999999999999999987632 2235666665322 22344455566666654322222222 233333332
Q ss_pred c-CCeEEEEEeccc
Q 036714 236 A-KEKFVLILDDMW 248 (932)
Q Consensus 236 ~-~kr~LlVlDdv~ 248 (932)
. +..=+|++|-.-
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1 334577888764
No 326
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.95 E-value=0.11 Score=55.35 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=49.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc-----cchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE-----NEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 231 (932)
-+++-|+|+.|+||||||.++....+. ....++|++....++... +++++.+... .....+......
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 479999999999999999999987632 245789999888776543 3444443221 111222222222
Q ss_pred HHHhcCCeEEEEEecccc
Q 036714 232 GMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~~ 249 (932)
+.+..+.--++|+|.|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 223345556899998854
No 327
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.2 Score=58.02 Aligned_cols=92 Identities=20% Similarity=0.323 Sum_probs=61.4
Q ss_pred ccccccchHHHHHHHHHHhcC---------C---CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG---------D---KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY 201 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 201 (932)
.++=|- ++.+.+|.+-+.- . +.+-|.++|++|+|||-+|++|+.... ..|++|-.+
T Consensus 672 dDVGGL--eevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP-- 739 (953)
T KOG0736|consen 672 DDVGGL--EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP-- 739 (953)
T ss_pred hcccCH--HHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH--
Confidence 566665 6667777665431 1 245788999999999999999998762 455666554
Q ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccc
Q 036714 202 LIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 202 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
+++..- +| ..++.+++.+++....++++|.+|.++.
T Consensus 740 --ELLNMY---VG-------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 --ELLNMY---VG-------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --HHHHHH---hc-------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 232221 11 1234456666666677899999999874
No 328
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.94 E-value=0.099 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+|+|.|+.|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 329
>PRK14974 cell division protein FtsY; Provisional
Probab=94.92 E-value=0.13 Score=55.71 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=48.7
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC--HHHHHHHHHHHHhcccccc---chHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY--LIKLQTEIATALKQSLLEN---EDKVRRAGEL 230 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l 230 (932)
+..+|.++|++|+||||++..++..... ..+ .++.+. .+.+. ..+-++..+..++.+.... .+....+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~--~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK--NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 4689999999999999999999987632 233 344443 22222 2233455666666543211 1111212222
Q ss_pred HHHH-hcCCeEEEEEecccc
Q 036714 231 LGML-KAKEKFVLILDDMWE 249 (932)
Q Consensus 231 ~~~l-~~~kr~LlVlDdv~~ 249 (932)
.+.. ..+.. +|++|..-.
T Consensus 215 i~~~~~~~~D-vVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGID-VVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCC-EEEEECCCc
Confidence 2221 12333 888998743
No 330
>PRK06762 hypothetical protein; Provisional
Probab=94.91 E-value=0.023 Score=55.29 Aligned_cols=25 Identities=48% Similarity=0.629 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999875
No 331
>PTZ00301 uridine kinase; Provisional
Probab=94.91 E-value=0.022 Score=57.30 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|.+|.||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 332
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.90 E-value=0.042 Score=53.42 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=31.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY 201 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 201 (932)
..++.+.|+.|+|||.+|+.+++.... +.....+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~--~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV--GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc--CCccchHHHhhhcccc
Confidence 467899999999999999999998721 3445556666554333
No 333
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.87 E-value=0.13 Score=54.04 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=30.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 198 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 198 (932)
-+++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 47899999999999999999877642 2344678887764
No 334
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.83 E-value=0.1 Score=59.09 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=48.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC-HHHHHHHHHHHHhccccccchHH-----HHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY-LIKLQTEIATALKQSLLENEDKV-----RRAGEL 230 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~l 230 (932)
-.-+.|+|++|+|||||++.+++.........++ +.+-|.+... +.++...+-..+-....+..... ..+...
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~-ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHL-MVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEE-EEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999976432223222 2444555432 33332222111111111111111 111122
Q ss_pred HHHH-hcCCeEEEEEecccc
Q 036714 231 LGML-KAKEKFVLILDDMWE 249 (932)
Q Consensus 231 ~~~l-~~~kr~LlVlDdv~~ 249 (932)
.+.+ -.++.+||++|++-.
T Consensus 495 Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHcCCCEEEEEeCchH
Confidence 2222 268899999999854
No 335
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.80 E-value=0.029 Score=56.83 Aligned_cols=26 Identities=42% Similarity=0.581 Sum_probs=23.8
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999876
No 336
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.80 E-value=0.083 Score=52.43 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=28.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
++.|.|++|+|||+||.++..... ..-..++|++...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC
Confidence 367999999999999999988763 22345778876543
No 337
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.79 E-value=0.094 Score=57.75 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=49.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENE-DKVRRAGELLGMLK 235 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 235 (932)
-.++.|.|.+|+|||||+.+++..... ....++|++..+. ...+ ..-++.++....... ........+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 479999999999999999999987632 2346788876543 2222 222344443221100 00011222333333
Q ss_pred cCCeEEEEEecccc
Q 036714 236 AKEKFVLILDDMWE 249 (932)
Q Consensus 236 ~~kr~LlVlDdv~~ 249 (932)
..+.-+||+|.+..
T Consensus 156 ~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ELKPDLVIIDSIQT 169 (372)
T ss_pred hcCCcEEEEcchHH
Confidence 44566788888743
No 338
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.003 Score=60.71 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=18.8
Q ss_pred ccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCcc
Q 036714 816 TLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKR 859 (932)
Q Consensus 816 ~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~ 859 (932)
.+++++.|.+.+|..+.+++.......+|+|+.|+|++||++++
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 34444444444444444444322222344444444444444443
No 339
>PRK07667 uridine kinase; Provisional
Probab=94.78 E-value=0.036 Score=55.31 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=24.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...+|+|.|.+|+||||+|+.+.....
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999873
No 340
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.12 Score=58.06 Aligned_cols=128 Identities=17% Similarity=0.230 Sum_probs=74.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
..-|.++|++|+|||-||++|+|.. .-.| ++|..+ +++.... ......++.+++....
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV----------GESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV----------GESERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh----------hhHHHHHHHHHHHhhc
Confidence 5678899999999999999999986 2233 444433 2222211 1223345666776667
Q ss_pred CCeEEEEEeccccc-------cc------cccccCCCC--CCCCCcEEEEEeCCccccc-----ccccee-EeccCCCHH
Q 036714 237 KEKFVLILDDMWEA-------FR------LEEVGIPEP--SEENGCKLVVTTRSVGICR-----SMGCKE-VRVQPLSNE 295 (932)
Q Consensus 237 ~kr~LlVlDdv~~~-------~~------~~~l~~~~~--~~~~gs~iivTTR~~~v~~-----~~~~~~-~~l~~L~~~ 295 (932)
..+++|.||.++.. .. ...+..-+. ....|--||-.|...++-. ...-+. ..++.=+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 78999999998631 11 111111111 1234555666666555532 112222 555666677
Q ss_pred HHHHHHHHhhC
Q 036714 296 EALNLFLDKVG 306 (932)
Q Consensus 296 ~~~~lf~~~~~ 306 (932)
|-..+++....
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 77888887665
No 341
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.77 E-value=0.16 Score=56.61 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=36.4
Q ss_pred HHHHHHHHHhc-----CC--CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEE
Q 036714 143 KVVEEIWEDLM-----GD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194 (932)
Q Consensus 143 ~~~~~l~~~L~-----~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 194 (932)
+.++++..||. .+ +.+|+.|.|++|+||||.++.++... .+..+=|.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 34667777776 33 35699999999999999999998875 45566776
No 342
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.76 E-value=0.15 Score=56.97 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+.++.++|++|+||||.|..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999999999999875
No 343
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.75 E-value=0.73 Score=49.12 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhh--------ccCCCcEEEEEEE-CCccCHHHHHHHHHHHHh
Q 036714 145 VEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQK--------ETNKFNVVIWVTV-SQPLYLIKLQTEIATALK 214 (932)
Q Consensus 145 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~--------~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~ 214 (932)
++.+.+.+..+. .++..++|..|.||+++|..+.+..-. ....++ +.++.. +....++++. ++.+.+.
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n-~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPAN-IILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcc-eEEeccCCCcCCHHHHH-HHHHHhc
Confidence 455566666655 466679999999999999999988611 111222 223321 1222222222 2222221
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEEeC-Cccccccc--cceeEec
Q 036714 215 QSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVTTR-SVGICRSM--GCKEVRV 289 (932)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR-~~~v~~~~--~~~~~~l 289 (932)
.. ....+++=++|+|++.... ....+...+......+.+|++|. ...+..-. .+..+++
T Consensus 83 ~~----------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 83 FS----------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred cC----------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 11 0012467788899986532 23333333333345666666554 34444322 2333999
Q ss_pred cCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 290 QPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 290 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
.+++.++..+.+... +. + ++.+..++...+|.=.|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~~-----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-NK-----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-CC-----C---hhHHHHHHHHcCCHHHHHHH
Confidence 999999988777654 21 1 23456666666763344444
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.71 E-value=0.086 Score=51.53 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.+..-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4799999999999999999998764
No 345
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.70 E-value=0.022 Score=59.91 Aligned_cols=89 Identities=24% Similarity=0.337 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHH
Q 036714 145 VEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKV 224 (932)
Q Consensus 145 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 224 (932)
...+++.+...+. -+.++|+.|+|||++++...+... ...| .+.-++.+.......+++.|-..+.......
T Consensus 22 ~~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~---- 93 (272)
T PF12775_consen 22 YSYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRV---- 93 (272)
T ss_dssp HHHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEE----
T ss_pred HHHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCC----
Confidence 3455565555544 458999999999999999887542 1222 2334455554444443322211111100000
Q ss_pred HHHHHHHHHHhcCCeEEEEEeccc
Q 036714 225 RRAGELLGMLKAKEKFVLILDDMW 248 (932)
Q Consensus 225 ~~~~~l~~~l~~~kr~LlVlDdv~ 248 (932)
.. -..+|+.++.+||+.
T Consensus 94 ------~g-P~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 94 ------YG-PPGGKKLVLFIDDLN 110 (272)
T ss_dssp ------EE-EESSSEEEEEEETTT
T ss_pred ------CC-CCCCcEEEEEecccC
Confidence 00 014689999999985
No 346
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.69 E-value=0.07 Score=54.50 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=22.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|+|+.|.|||||.+.+..-.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999999844
No 347
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.69 E-value=0.058 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999999865
No 348
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.68 E-value=0.083 Score=52.12 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999864
No 349
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.65 E-value=0.1 Score=53.47 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=67.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEE--ECC--ccCHHHHHHHHHHHHhcccc------ccchHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT--VSQ--PLYLIKLQTEIATALKQSLL------ENEDKVRR 226 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~--~s~--~~~~~~~~~~i~~~l~~~~~------~~~~~~~~ 226 (932)
-.+++|+|..|+||||+++.+..-. ......+.|-. +.. .....+-..++++.++.... .+-+..++
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 4789999999999999999999865 33444444431 111 11222334455555553211 11111222
Q ss_pred HHHHHHHHhcCCeEEEEEeccccccc------cccccCCCCCCCCCcEEEEEeCCccccccccce
Q 036714 227 AGELLGMLKAKEKFVLILDDMWEAFR------LEEVGIPEPSEENGCKLVVTTRSVGICRSMGCK 285 (932)
Q Consensus 227 ~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~ 285 (932)
.+-.+.+.+.-++-++|.|..-...+ .-.+...+. ...|-..+..|-+-.+++.+...
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhccc
Confidence 22223333356789999998654322 111111111 12355677888877776665443
No 350
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.65 E-value=0.028 Score=55.97 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=23.3
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.++|.|+|++|+||||+|+.+++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999765
No 351
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.65 E-value=0.19 Score=52.20 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=56.0
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhh-ccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhccc------cccchHHHH-
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQK-ETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQSL------LENEDKVRR- 226 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~- 226 (932)
.-..++|.|..|+|||+|+.++.++... .+..-+.++++-+++.. .+.++..++.+.=.... ..++....+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999999887521 11235678888887764 45566555544311100 011111111
Q ss_pred -----HHHHHHHHh-c-CCeEEEEEeccccc
Q 036714 227 -----AGELLGMLK-A-KEKFVLILDDMWEA 250 (932)
Q Consensus 227 -----~~~l~~~l~-~-~kr~LlVlDdv~~~ 250 (932)
...+.+.+. + ++++|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 111222222 3 78999999999653
No 352
>PRK03839 putative kinase; Provisional
Probab=94.63 E-value=0.028 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999986
No 353
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.034 Score=55.22 Aligned_cols=26 Identities=50% Similarity=0.723 Sum_probs=24.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++-+|+|.|.+|.||||+|+.++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999987
No 354
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.61 E-value=0.035 Score=51.20 Aligned_cols=105 Identities=14% Similarity=0.272 Sum_probs=64.5
Q ss_pred CChhhhccCCceeEEEccCCCCcccCcc-ccccccccccccccccccCCCC--ChhccccCcEeecccCCCcccccc-cc
Q 036714 532 IPECFFVYMHGLKVLNLSRTNIKVLPSS-VSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEVPEG-ME 607 (932)
Q Consensus 532 ~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~ 607 (932)
++...|.++.+|+.+.+.. .+..++.. +..+.+|+.+.+.+. +..++ .+.++.+|+.+.+.. .+..++.. +.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccc
Confidence 5566788899999999985 56666554 566778999999863 67766 588888899999965 56666543 45
Q ss_pred cCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 608 MLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 608 ~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
.+++|+.+.+..+ +..++...+.++ +|+.+.+.
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 6889999999765 777777778887 88888765
No 355
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.60 E-value=0.099 Score=58.26 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=48.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHh-----ccccccchHHHH-----
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALK-----QSLLENEDKVRR----- 226 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~----- 226 (932)
-..++|+|..|+|||||++.++... .....+++....+..++.++......... .-...+.+...+
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999888653 22233445443334445544443333221 111112221111
Q ss_pred ----HHHHHHHHhcCCeEEEEEecccc
Q 036714 227 ----AGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 227 ----~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
+.+.++ -+++.+|+++||+-.
T Consensus 241 ~a~~iAEyfr--d~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFR--DRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHH--HcCCCEEEeccchHH
Confidence 122222 258899999999864
No 356
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.55 E-value=0.34 Score=52.69 Aligned_cols=101 Identities=18% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCC----CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-cCHHHHHHHHHHHHhcccc
Q 036714 144 VVEEIWEDLMGD----KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LYLIKLQTEIATALKQSLL 218 (932)
Q Consensus 144 ~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~ 218 (932)
....+..++.++ ..++|.++|+.|+||||-...++..... ...-..+..++...- -...+-++.-++-++.+..
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 344455555544 3799999999999997654445544421 233345666664332 2344455666777777655
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEEeccc
Q 036714 219 ENEDKVRRAGELLGMLKAKEKFVLILDDMW 248 (932)
Q Consensus 219 ~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 248 (932)
...+..+... .+..+ +.. =+|.+|-+-
T Consensus 265 vv~~~~el~~-ai~~l-~~~-d~ILVDTaG 291 (407)
T COG1419 265 VVYSPKELAE-AIEAL-RDC-DVILVDTAG 291 (407)
T ss_pred EecCHHHHHH-HHHHh-hcC-CEEEEeCCC
Confidence 4433333222 22333 222 344556553
No 357
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.55 E-value=0.069 Score=49.95 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=28.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 198 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 198 (932)
++|.|+|..|+|||||++.+.+.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~--~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR--RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH--cCCceEEEEEccC
Confidence 58999999999999999999999842 4555555555544
No 358
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.54 E-value=0.18 Score=53.25 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+.+|+|.|+.|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999887665
No 359
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.54 E-value=0.064 Score=58.79 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=46.1
Q ss_pred ccccccchHHHHHHHHHHhcC---------C-----CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE-CC
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG---------D-----KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV-SQ 198 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-s~ 198 (932)
..++|. ++.++.+..++.. + ..+.|.++|++|+|||++|+.++.......-.++...|... -.
T Consensus 15 ~~IiGQ--e~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQ--DDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCH--HHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcc
Confidence 457887 5566655555422 0 14678999999999999999999986322223333322221 11
Q ss_pred ccCHHHHHHHHHHHH
Q 036714 199 PLYLIKLQTEIATAL 213 (932)
Q Consensus 199 ~~~~~~~~~~i~~~l 213 (932)
..+.+.+.+.+....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 224555555555443
No 360
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.53 E-value=0.13 Score=50.38 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.8
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999999987
No 361
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.52 E-value=0.046 Score=57.32 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=20.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
+.|.|+|.+|+||||+|+++.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999874
No 362
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.50 E-value=0.028 Score=50.00 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHh
Q 036714 160 IGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
|-|+|++|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998874
No 363
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.48 E-value=0.07 Score=52.93 Aligned_cols=43 Identities=35% Similarity=0.462 Sum_probs=30.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
.|+|+|-||+||||+|..++.....+ +.| .+.-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~-~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK-GGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc-CCc-eEEEEeCCCCCChH
Confidence 68999999999999999977776332 223 35555555555543
No 364
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.48 E-value=0.18 Score=47.82 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=26.8
Q ss_pred hcCCCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 152 LMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 152 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
+...+..||.+.|.+|.||||+|.++++...
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 3445578999999999999999999999884
No 365
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.47 E-value=0.2 Score=48.19 Aligned_cols=117 Identities=20% Similarity=0.069 Sum_probs=60.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEE---EEECCccCHHHHHHHHH---HHHhcc--c--cccchHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW---VTVSQPLYLIKLQTEIA---TALKQS--L--LENEDKVRR 226 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w---v~~s~~~~~~~~~~~i~---~~l~~~--~--~~~~~~~~~ 226 (932)
.+.|-|++..|.||||.|..++-+.. .+--.++. +.......-...+..+. .+.+.. + .+.......
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~---~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL---GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 46888999999999999999988763 22223333 33332233333333220 000110 0 011111111
Q ss_pred H----HHHHHHHhcCCeEEEEEeccccc-----cccccccCCCCCCCCCcEEEEEeCCc
Q 036714 227 A----GELLGMLKAKEKFVLILDDMWEA-----FRLEEVGIPEPSEENGCKLVVTTRSV 276 (932)
Q Consensus 227 ~----~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTTR~~ 276 (932)
+ ....+.+..++-=+||||.+-.. -+.+++...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2 22223333455669999998532 22233333333334567899999974
No 366
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.17 Score=52.53 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=25.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKE 184 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 184 (932)
.++|.++||+|.|||+|.++++++...+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4889999999999999999999998543
No 367
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.28 Score=50.21 Aligned_cols=149 Identities=15% Similarity=0.244 Sum_probs=79.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+-|.++|++|.||+.||++|+.... .. |.+||.. ++. .+.++ .....+..+++-...
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn---ST-----FFSvSSS----DLv---SKWmG-------ESEkLVknLFemARe 223 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN---ST-----FFSVSSS----DLV---SKWMG-------ESEKLVKNLFEMARE 223 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC---Cc-----eEEeehH----HHH---HHHhc-------cHHHHHHHHHHHHHh
Confidence 57899999999999999999998751 22 2344432 111 11122 122344555555557
Q ss_pred CCeEEEEEeccccc---------cccccc----cC---CCCCCCCCcEEEEEeCCccccccccce---e-EeccCCCHHH
Q 036714 237 KEKFVLILDDMWEA---------FRLEEV----GI---PEPSEENGCKLVVTTRSVGICRSMGCK---E-VRVQPLSNEE 296 (932)
Q Consensus 237 ~kr~LlVlDdv~~~---------~~~~~l----~~---~~~~~~~gs~iivTTR~~~v~~~~~~~---~-~~l~~L~~~~ 296 (932)
.|+-+|.+|.|+.. +.-..+ .. .......|.-|+=.|...-+..+.-.. . |.+ ||.+..
T Consensus 224 ~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~ 302 (439)
T KOG0739|consen 224 NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAH 302 (439)
T ss_pred cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHH
Confidence 89999999998631 111111 11 112233455555566654433221111 1 222 455555
Q ss_pred HH-HHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 297 AL-NLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 297 ~~-~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
|. .+|+-++|.... ..-++..+++.++..|..
T Consensus 303 AR~~MF~lhlG~tp~---~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 303 ARARMFKLHLGDTPH---VLTEQDFKELARKTEGYS 335 (439)
T ss_pred HhhhhheeccCCCcc---ccchhhHHHHHhhcCCCC
Confidence 55 466667776432 223345666777776643
No 368
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.072 Score=52.20 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=32.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
..+|+|-||=|+||||||+.++++.. | .++.-.+.+++-++....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~-----~-~~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG-----F-KVFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC-----C-ceeeecccCChHHHHHHHhH
Confidence 47899999999999999999999872 2 23344455554444444443
No 369
>PRK04040 adenylate kinase; Provisional
Probab=94.40 E-value=0.037 Score=54.83 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|+|+|++|+||||+++.+.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999886
No 370
>PRK00625 shikimate kinase; Provisional
Probab=94.37 E-value=0.034 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.428 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|.++||+|+||||+++.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 371
>PRK04328 hypothetical protein; Provisional
Probab=94.37 E-value=0.16 Score=53.04 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=31.7
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
.-+++.|.|.+|+|||+||.++..... ......+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCC
Confidence 358999999999999999999877642 23456788887664
No 372
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.34 E-value=0.084 Score=54.25 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred ccccccchHHHHHHHHHHh----cCC---CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-cCHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDL----MGD---KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LYLIKL 205 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L----~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~ 205 (932)
..++|. .-.++.++..+ ..+ ++=|++.+|.+|+||..+++.+++........-+.|-....... +....+
T Consensus 82 ~~lfGQ--Hla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i 159 (344)
T KOG2170|consen 82 RALFGQ--HLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI 159 (344)
T ss_pred HHhhch--HHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH
Confidence 456776 33444444444 332 46799999999999999999999987432222211111111111 111111
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccc
Q 036714 206 QTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 206 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
+.-..+....+......-+|-|+|+|+|+.
T Consensus 160 --------------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DK 189 (344)
T KOG2170|consen 160 --------------EDYKEELKNRVRGTVQACQRSLFIFDEVDK 189 (344)
T ss_pred --------------HHHHHHHHHHHHHHHHhcCCceEEechhhh
Confidence 111223333444444456899999999986
No 373
>PF13245 AAA_19: Part of AAA domain
Probab=94.34 E-value=0.1 Score=42.81 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=19.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.+++.|.|++|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35788899999999995555554444
No 374
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.33 E-value=0.099 Score=50.74 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999865
No 375
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.33 E-value=0.03 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=17.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|.|+|.+|+||||+|+.++...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6789999999999999999986
No 376
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.32 E-value=0.13 Score=57.78 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=46.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
.+++.++|++|+||||++..++...... .....+..|+..... ...+-+...++.++.+.....+.. .....+..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~-~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPK-ELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHH-hHHHHHHHh-
Confidence 3689999999999999999998876311 223456666543211 112223334444544432222222 222223333
Q ss_pred cCCeEEEEEecc
Q 036714 236 AKEKFVLILDDM 247 (932)
Q Consensus 236 ~~kr~LlVlDdv 247 (932)
. ..=+|++|..
T Consensus 298 ~-~~DlVlIDt~ 308 (424)
T PRK05703 298 R-DCDVILIDTA 308 (424)
T ss_pred C-CCCEEEEeCC
Confidence 2 3457888865
No 377
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.34 Score=56.37 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=74.5
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
..+.+-++|++|.|||.||+++++.. ...| +.+... ++.. .. .......+..++....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~f-----i~v~~~----~l~s----k~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRF-----ISVKGS----ELLS----KW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeE-----EEeeCH----HHhc----cc------cchHHHHHHHHHHHHH
Confidence 35689999999999999999999964 1233 222211 1111 00 1122334555555555
Q ss_pred cCCeEEEEEeccccccc-------------cccccCCCC--CCCCCcEEEEEeCCccccccc-----ccee-EeccCCCH
Q 036714 236 AKEKFVLILDDMWEAFR-------------LEEVGIPEP--SEENGCKLVVTTRSVGICRSM-----GCKE-VRVQPLSN 294 (932)
Q Consensus 236 ~~kr~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs~iivTTR~~~v~~~~-----~~~~-~~l~~L~~ 294 (932)
+..+..|.+|+++.... ...+...+. ....+..||-||......... .-.. +.+..-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 67899999999864211 111211221 112333345555544333211 1122 78888889
Q ss_pred HHHHHHHHHhhCCC
Q 036714 295 EEALNLFLDKVGSS 308 (932)
Q Consensus 295 ~~~~~lf~~~~~~~ 308 (932)
++..+.|+.+....
T Consensus 413 ~~r~~i~~~~~~~~ 426 (494)
T COG0464 413 EERLEIFKIHLRDK 426 (494)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999887643
No 378
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.30 E-value=0.057 Score=58.48 Aligned_cols=51 Identities=16% Similarity=0.373 Sum_probs=43.1
Q ss_pred cCCcccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 130 TLTMATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 130 ~~~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..|-+.+||. ++.+..|...+.++.++-|.|.|..|+||||+|+.+++-..
T Consensus 13 ~~pf~~ivGq--~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 13 VFPFTAIVGQ--EEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCHHHHhCh--HHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4566889998 67788888888888888888999999999999999987763
No 379
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.26 E-value=0.075 Score=50.18 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|..|.|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4789999999999999999998865
No 380
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.26 E-value=0.07 Score=59.76 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=35.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|| ++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gr--e~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYER--SHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCc--HHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 357888 67777777776654 568899999999999999999876
No 381
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.25 E-value=0.034 Score=55.96 Aligned_cols=113 Identities=17% Similarity=0.106 Sum_probs=65.5
Q ss_pred ccccccccccccccccccCCCC-C----hhccccCcEeecccCCCcccc--------------cccccCCCCCEEeCCCC
Q 036714 560 VSDLMNLRSLLLRWCENLERVP-S----LAKLLALQYLDLEETGIEEVP--------------EGMEMLENLSHLYLSSP 620 (932)
Q Consensus 560 i~~l~~L~~L~L~~~~~l~~lp-~----~~~l~~L~~L~l~~~~i~~lp--------------~~~~~l~~L~~L~l~~~ 620 (932)
+-.|++|+..+|++|-.-...| . +++-..|.+|.+++|++..+. +....=+.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 3456677777777665533333 2 455566777777777554331 11234467888888877
Q ss_pred CCcccCCCc----cCCCCCcceEEeecCCchhhhcH-----HHHHHHHhccceeEEEecChhh
Q 036714 621 RLKKFPTGI----LPRLRNLYKLKLSFGNEALRETV-----EEAARLSDRLDTFEGIFSTLND 674 (932)
Q Consensus 621 ~l~~~p~~~----l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~l~~~L~~L~l~~~~~~~ 674 (932)
++...|... +..-.+|+++.+.. +.+.+.++ ..+.-+ .+|+.|++..|.++.
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~ 228 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTL 228 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHh-Ccceeeeccccchhh
Confidence 766555422 33345777777773 33333322 233344 788888888776543
No 382
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.20 E-value=0.18 Score=56.97 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=37.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHhccc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALKQSL 217 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 217 (932)
.+|++++|+.|+||||++.+++...... .....+..+.... .....+-++..++.++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~-~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR-HGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh-cCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 3799999999999999999999876322 2222455554322 1223344455556555443
No 383
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.20 E-value=0.13 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++++|+|+.|.|||||++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998654
No 384
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.19 E-value=0.66 Score=47.88 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHh
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
+|+|.|.+|+||||+|+.+.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998873
No 385
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.17 E-value=0.033 Score=55.18 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999875
No 386
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.15 E-value=0.072 Score=54.88 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=43.3
Q ss_pred HHHHHHhc--CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHH
Q 036714 146 EEIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQ 206 (932)
Q Consensus 146 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 206 (932)
.+++..+. .++..||+|.|.||+|||||.-.+...+. ..++--.++-|+-|.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~-~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR-ERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH-HCCcEEEEEEECCCCCCCCcccc
Confidence 34445443 35678999999999999999999999883 34555556666667777655554
No 387
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.11 E-value=0.47 Score=57.62 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=31.9
Q ss_pred ccccccchHHHHHHHHHHhc--CCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|+. ..+.++.+.+. .....-|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S--~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRS--EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecC--HHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4688874 34444433332 1223578899999999999999998865
No 388
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.11 E-value=0.033 Score=55.93 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+|+|.|++|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 389
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.10 E-value=0.074 Score=57.63 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=38.9
Q ss_pred CcccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 132 TMATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 132 ~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|-..+||. ++.+..++-.+.++...-|.|.|..|+|||||++.+..-.
T Consensus 2 pf~~ivgq--~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQ--DEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccH--HHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34578997 6677777777777667778899999999999999998765
No 390
>PRK05439 pantothenate kinase; Provisional
Probab=94.06 E-value=0.28 Score=52.33 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999998866
No 391
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.05 E-value=0.081 Score=54.47 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=25.3
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
+...+|+|.|+.|.|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999998873
No 392
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.03 E-value=0.17 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.6
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
....+|+|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999876
No 393
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.03 E-value=0.1 Score=53.62 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999999999999999854
No 394
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.02 E-value=0.085 Score=54.28 Aligned_cols=48 Identities=23% Similarity=0.200 Sum_probs=32.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTE 208 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 208 (932)
-+++.|.|.+|+|||++|.++....... .-..++|++..++. .++.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~--~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP--EELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H--HHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH--HHHHHH
Confidence 5899999999999999999977654222 13457888765543 444443
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.01 E-value=0.28 Score=54.65 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=36.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHhccc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALKQSL 217 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 217 (932)
..+|+++|+.|+||||++..++..... ....+.+..+.... .....+-+...++.++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~-~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVI-RHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 479999999999999999998876421 12223444443322 1223333455556665544
No 396
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.00 E-value=0.048 Score=53.45 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=23.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|.|+|++|+||||+|+.+++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 397
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.99 E-value=0.12 Score=52.51 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=32.6
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHH
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQ 206 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 206 (932)
++..+|+|.|+||+|||||..++...+.. .++--.++-|+-|.+++--.++
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---SS
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCccc
Confidence 45789999999999999999999998843 3333345555556666544443
No 398
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.99 E-value=0.039 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 399
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.96 E-value=0.068 Score=51.70 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||.+.++...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998764
No 400
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.95 E-value=0.25 Score=57.08 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=36.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALK 214 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 214 (932)
-+++.|.|++|+|||||+.+++.... ..-..+++++..++ ...+...+ +.++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcC
Confidence 58999999999999999999998763 23455677765544 34444432 3444
No 401
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.91 E-value=0.18 Score=60.11 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=54.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc-----cchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE-----NEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 231 (932)
-+++-|.|++|+||||||.+++.... ..-..++|++....++. ..+++++.+... .....+....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 57888999999999999988776653 23356799988777763 356666654321 112222222222
Q ss_pred HHHhcCCeEEEEEeccc
Q 036714 232 GMLKAKEKFVLILDDMW 248 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~ 248 (932)
.....++.-|||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 32334567799999985
No 402
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.89 E-value=0.14 Score=50.00 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998864
No 403
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.89 E-value=0.22 Score=55.96 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=55.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhcc------ccccchHHHH--
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQS------LLENEDKVRR-- 226 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~-- 226 (932)
.-..++|.|.+|+|||||+.++.+...+ .+-+.++++-+++.. .+.++..++...-... ...+.+...+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~--~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK--QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 3477999999999999999999988632 256777787776654 3445555554321110 0011111111
Q ss_pred ----HHHHHHHHh--cCCeEEEEEecccc
Q 036714 227 ----AGELLGMLK--AKEKFVLILDDMWE 249 (932)
Q Consensus 227 ----~~~l~~~l~--~~kr~LlVlDdv~~ 249 (932)
+..+.+.+. .++++|+++|++-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 111222221 37999999999954
No 404
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.14 Score=50.04 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++.-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999999999999865
No 405
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.88 E-value=0.024 Score=33.88 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=14.2
Q ss_pred ceeEEEccCCCCcccCccccc
Q 036714 542 GLKVLNLSRTNIKVLPSSVSD 562 (932)
Q Consensus 542 ~L~~L~L~~~~~~~lp~~i~~ 562 (932)
+|++|+|++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777765543
No 406
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.88 E-value=0.024 Score=33.92 Aligned_cols=18 Identities=33% Similarity=0.783 Sum_probs=9.1
Q ss_pred CcEeecccCCCccccccc
Q 036714 589 LQYLDLEETGIEEVPEGM 606 (932)
Q Consensus 589 L~~L~l~~~~i~~lp~~~ 606 (932)
|++|++++|.++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 407
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.87 E-value=0.088 Score=60.54 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=67.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccC-----CCcEEEEEEECC-c-c---CH------------HHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETN-----KFNVVIWVTVSQ-P-L---YL------------IKLQTEIATALK 214 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~s~-~-~---~~------------~~~~~~i~~~l~ 214 (932)
-..|+|+|+.|+|||||.+.+........+ ..-.+.++.-.. . . ++ ..-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 467999999999999999999776532111 111122222111 0 0 11 111122222222
Q ss_pred cccccc------chHHHHHHHHHHHHhcCCeEEEEEeccccc------cccccccCCCCCCCCCcEEEEEeCCccccccc
Q 036714 215 QSLLEN------EDKVRRAGELLGMLKAKEKFVLILDDMWEA------FRLEEVGIPEPSEENGCKLVVTTRSVGICRSM 282 (932)
Q Consensus 215 ~~~~~~------~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~~ 282 (932)
-..... -+.-++.+-.+..+.-.++=+||||.=-+. +.+++....++ |+ ||+.|.++......
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----Gt-vl~VSHDr~Fl~~v 502 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----GT-VLLVSHDRYFLDRV 502 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----Ce-EEEEeCCHHHHHhh
Confidence 111111 111233344445555667889999976543 33444333333 54 88889888776665
Q ss_pred cceeEeccC
Q 036714 283 GCKEVRVQP 291 (932)
Q Consensus 283 ~~~~~~l~~ 291 (932)
....+.+.+
T Consensus 503 a~~i~~~~~ 511 (530)
T COG0488 503 ATRIWLVED 511 (530)
T ss_pred cceEEEEcC
Confidence 544455543
No 408
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.85 E-value=0.05 Score=53.66 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|+|++|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 409
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.84 E-value=0.29 Score=54.54 Aligned_cols=86 Identities=10% Similarity=0.200 Sum_probs=50.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhccc------cccchHHHH---
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQSL------LENEDKVRR--- 226 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~--- 226 (932)
-..++|+|..|+|||||++++++.. .-+.++++-+++.. .+.++..+.+..-+... ..+.+...+
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 4778999999999999999999764 12345556565544 34455444433211110 011111111
Q ss_pred ------HHHHHHHHhcCCeEEEEEecccc
Q 036714 227 ------AGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 227 ------~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
+.+.++ -+++.+|+++||+-.
T Consensus 233 ~~~a~tiAEyfr--d~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFR--DQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHH--HCCCcEEEEEeCcHH
Confidence 122222 258899999999965
No 410
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.79 E-value=0.37 Score=57.37 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=50.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
.+||+++|+.|+||||.+.+++..... ......+..++... .....+-++...+.++.+.....+... +...++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~- 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAAL- 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHh-
Confidence 479999999999999999999987632 12223455554322 122445556666666654432222222 33334444
Q ss_pred cCCeEEEEEeccc
Q 036714 236 AKEKFVLILDDMW 248 (932)
Q Consensus 236 ~~kr~LlVlDdv~ 248 (932)
.++ =+|++|-.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 233 377778764
No 411
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.73 E-value=0.095 Score=48.11 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=23.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+|.+.|.-|+||||+++.+++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999986
No 412
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.68 E-value=0.052 Score=53.39 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=22.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHh
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998873
No 413
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.66 E-value=0.068 Score=51.62 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.3
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..++++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999998873
No 414
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.66 E-value=0.05 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 415
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.65 E-value=5 Score=43.26 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=33.8
Q ss_pred eEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 286 EVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 286 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
.+++++++.+|+..++.-....+-.......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 3789999999999998876544432122334556677777779998643
No 416
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.64 E-value=0.11 Score=61.09 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=54.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
..++|. ++.++.|...+... +.+.++|++|+||||+|+.+++... ...++..+|..-+. .+...+++.++.++
T Consensus 31 ~~vigq--~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np~-~~~~~~~~~v~~~~ 103 (637)
T PRK13765 31 DQVIGQ--EHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNPE-DPNNPKIRTVPAGK 103 (637)
T ss_pred HHcCCh--HHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCCC-cchHHHHHHHHHhc
Confidence 678897 66777777666655 4688999999999999999998762 34567788876533 35566666666655
Q ss_pred hc
Q 036714 214 KQ 215 (932)
Q Consensus 214 ~~ 215 (932)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 53
No 417
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.64 E-value=0.14 Score=57.31 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.|.++|++|+|||++|+.+++..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999765
No 418
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.63 E-value=0.08 Score=57.21 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=37.8
Q ss_pred cCCcccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 130 TLTMATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 130 ~~~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|.|-..++|. ++.++.+.-.+.+.+..-+.+.|.+|+||||+|+.+.+-.
T Consensus 4 ~~~f~~i~Gq--~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQ--EEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCH--HHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3445778998 5566666655544445669999999999999999998765
No 419
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.62 E-value=0.15 Score=53.52 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 146 EEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 146 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++...++...+..+|.|.|.+|.|||||+..+.+..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444555666779999999999999999999999986
No 420
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.58 E-value=0.22 Score=55.28 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=51.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC-HHHHHHHHHHHHhcc------ccccchHHHH---
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY-LIKLQTEIATALKQS------LLENEDKVRR--- 226 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~~--- 226 (932)
-..++|+|..|+|||||++.+++.. ..+.++.+-+++... +.++...++..-+.. ...+.+...+
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 4679999999999999999998643 224566666666543 445555543331110 0011111111
Q ss_pred ------HHHHHHHHhcCCeEEEEEecccc
Q 036714 227 ------AGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 227 ------~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
+.+.++. +++++|+++||+-.
T Consensus 237 ~~~A~tiAEyfrd--~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRD--QGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEEcChHH
Confidence 2222222 58999999999965
No 421
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.55 E-value=0.39 Score=51.81 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...+|+++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999998873
No 422
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.52 E-value=0.062 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=22.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 423
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.51 E-value=0.053 Score=51.68 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+|.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 424
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=0.011 Score=56.95 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=40.0
Q ss_pred CCccEEEEecCCCCcccccccccc-cCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcc
Q 036714 752 HDLKVLRFDSCKNLKNLFSLRLLP-ALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLRE 830 (932)
Q Consensus 752 ~~L~~L~L~~c~~l~~l~~~~~l~-~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~ 830 (932)
++++.|.+.+|..+.+- .+..+. -.++|+.|+|++|+.+++-.... +..|++|+.|.|.+++.
T Consensus 125 ~~i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~---------------L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCPRITDGGLAC---------------LLKLKNLRRLHLYDLPY 188 (221)
T ss_pred chhhhheeccccchhhH-HHHHhcccccchheeeccCCCeechhHHHH---------------HHHhhhhHHHHhcCchh
Confidence 67777777777766652 222111 34677777777777776553321 55677777777777654
Q ss_pred cc
Q 036714 831 FK 832 (932)
Q Consensus 831 L~ 832 (932)
..
T Consensus 189 v~ 190 (221)
T KOG3864|consen 189 VA 190 (221)
T ss_pred hh
Confidence 43
No 425
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.45 E-value=0.076 Score=53.75 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=27.7
Q ss_pred HHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 150 EDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 150 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.+.+.++++|+++|..|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556679999999999999999999999875
No 426
>PRK14530 adenylate kinase; Provisional
Probab=93.43 E-value=0.065 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.|.|+|++|+||||+|+.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 427
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.43 E-value=0.3 Score=54.60 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=55.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhcc------ccccchHHHH---
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQS------LLENEDKVRR--- 226 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~--- 226 (932)
-.-++|.|.+|+|||+|+.++.+... ..+-+.++++-+++.. .+.++.+++...-... ...+.+...+
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 46799999999999999999988753 2234678888877665 3445555554321110 0011111111
Q ss_pred ---HHHHHHHHh--cCCeEEEEEecccc
Q 036714 227 ---AGELLGMLK--AKEKFVLILDDMWE 249 (932)
Q Consensus 227 ---~~~l~~~l~--~~kr~LlVlDdv~~ 249 (932)
+..+.+.+. +++++|+++||+-.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 112223332 47899999999965
No 428
>PRK13949 shikimate kinase; Provisional
Probab=93.42 E-value=0.061 Score=52.30 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999986
No 429
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.41 E-value=0.22 Score=56.56 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=31.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
-.++.|.|.+|+|||||+.+++..... .-..++|++..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees 119 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEES 119 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcccc
Confidence 479999999999999999999987632 2345788876543
No 430
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.41 E-value=0.14 Score=56.64 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|++|.||||||+.+.--.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHccc
Confidence 3789999999999999999998655
No 431
>PRK13947 shikimate kinase; Provisional
Probab=93.40 E-value=0.063 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 432
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.083 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|..|+|||||++.++--.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhccc
Confidence 4789999999999999999999764
No 433
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.37 E-value=0.062 Score=50.73 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.9
Q ss_pred EEEEEeCCCChHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEIN 178 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~ 178 (932)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 434
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.29 E-value=0.24 Score=58.50 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=47.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
..++|. ++.++.+...+.... -+.++|++|+||||+|+.+++... ...|..++++.-+. .+...++..++.++
T Consensus 18 ~~viG~--~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~~-~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 18 DQVIGQ--EEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNPE-DPNMPRIVEVPAGE 90 (608)
T ss_pred hhccCH--HHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCCC-CCchHHHHHHHHhh
Confidence 778897 556666666665543 555999999999999999998863 22333333332222 23445566666665
Q ss_pred hc
Q 036714 214 KQ 215 (932)
Q Consensus 214 ~~ 215 (932)
+.
T Consensus 91 g~ 92 (608)
T TIGR00764 91 GR 92 (608)
T ss_pred ch
Confidence 53
No 435
>PRK05922 type III secretion system ATPase; Validated
Probab=93.29 E-value=0.38 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-..++|+|..|+|||||++.+.+..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC
Confidence 4679999999999999999998764
No 436
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.28 E-value=0.34 Score=62.23 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+-|.++|++|+|||.||++++.+.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4678899999999999999999985
No 437
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.27 E-value=0.1 Score=51.60 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=29.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 196 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 196 (932)
.++|.|+|+.|+|||||++++.... ...|...+..+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999976 356755555543
No 438
>PRK14527 adenylate kinase; Provisional
Probab=93.26 E-value=0.08 Score=52.79 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.6
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|.|+|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 439
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.19 E-value=0.064 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++|+|+|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999864
No 440
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.18 E-value=0.33 Score=54.10 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=49.9
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcc-------ccccchHHH---
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQS-------LLENEDKVR--- 225 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 225 (932)
.-..++|+|..|+|||||++.++.... . ...++.....+...+.++....+..-+.. ..+......
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 346889999999999999999988641 1 12233332233355656655444432211 011111111
Q ss_pred -----HHHHHHHHHhcCCeEEEEEeccccc
Q 036714 226 -----RAGELLGMLKAKEKFVLILDDMWEA 250 (932)
Q Consensus 226 -----~~~~l~~~l~~~kr~LlVlDdv~~~ 250 (932)
.+.+.++ -++++.|+++||+-..
T Consensus 231 ~~~a~~iAEyfr--~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFR--DQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHH--HcCCcEEEEecchHHH
Confidence 1111122 2578999999999653
No 441
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.17 E-value=0.51 Score=52.77 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=54.7
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhccc------cccchHHHH--
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQSL------LENEDKVRR-- 226 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~-- 226 (932)
.-..++|.|.+|+|||||+.++..... .++-+.++++-+++.. .+.++..++...=.... ..+.+...+
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 347799999999999999999988753 2233467777776654 45566665543211100 111111111
Q ss_pred ----HHHHHHHHh--cCCeEEEEEecccc
Q 036714 227 ----AGELLGMLK--AKEKFVLILDDMWE 249 (932)
Q Consensus 227 ----~~~l~~~l~--~~kr~LlVlDdv~~ 249 (932)
+..+.+.+. +++++|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 112222231 47899999999965
No 442
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.17 E-value=0.37 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHh
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
+..|+|++|+|||+||..++-...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987653
No 443
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.14 E-value=0.083 Score=53.55 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999853
No 444
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.14 E-value=0.13 Score=48.95 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 144 VVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 144 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|...+.+ +++.++|..|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45666677765 899999999999999999988763
No 445
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.13 E-value=0.11 Score=54.60 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=35.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
.-+++.|.|.+|+|||++|.++..... ..+..++||+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA---REGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH---hcCCcEEEEEecCC
Confidence 468999999999999999999999863 44788999988765
No 446
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.11 E-value=0.44 Score=51.16 Aligned_cols=86 Identities=12% Similarity=0.200 Sum_probs=48.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHhcc-------ccccchHH----
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALKQS-------LLENEDKV---- 224 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 224 (932)
-..++|+|..|+|||||++.+.+... -+.....-+.. ...+.++.......-+.. ..++....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 46789999999999999999987641 12333344433 334555554444332111 11111111
Q ss_pred ----HHHHHHHHHHhcCCeEEEEEecccc
Q 036714 225 ----RRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 225 ----~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
....+.++ -+++.+|+++||+-.
T Consensus 144 ~~~a~~~AEyfr--~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFR--DQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHH--HcCCCeEEEeccchH
Confidence 11122222 258899999999854
No 447
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.10 E-value=0.33 Score=55.16 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=30.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
-.++.|.|.+|+|||||+.+++..... .-..++|++..+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs 133 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES 133 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC
Confidence 479999999999999999999887632 2235778876543
No 448
>PLN02796 D-glycerate 3-kinase
Probab=93.08 E-value=0.55 Score=50.53 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.6
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..-+|+|.|..|+|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 449
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.19 Score=50.44 Aligned_cols=71 Identities=23% Similarity=0.377 Sum_probs=44.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
.++-|.++|++|.|||-+|++|+|+- ...| +.|-. .++.+.-- ......+.++++...
T Consensus 210 ppkgvllygppgtgktl~aravanrt---dacf-----irvig--------selvqkyv------gegarmvrelf~mar 267 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRT---DACF-----IRVIG--------SELVQKYV------GEGARMVRELFEMAR 267 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhccc---CceE-----Eeehh--------HHHHHHHh------hhhHHHHHHHHHHhc
Confidence 36778999999999999999999974 2222 22211 11111110 111233455666555
Q ss_pred cCCeEEEEEeccc
Q 036714 236 AKEKFVLILDDMW 248 (932)
Q Consensus 236 ~~kr~LlVlDdv~ 248 (932)
.+|-++|.+|.++
T Consensus 268 tkkaciiffdeid 280 (435)
T KOG0729|consen 268 TKKACIIFFDEID 280 (435)
T ss_pred ccceEEEEeeccc
Confidence 6778999999885
No 450
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.14 Score=58.91 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=59.3
Q ss_pred ccccccch-HHHHHHHHHHhcCCC---------eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
.+.-|.+. .+++.++++.|.++. ++-|.++|++|.|||.||++++... .+ ..| +.|.+.-++
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf------~iSGS~FVe 221 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFF------SISGSDFVE 221 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-Cce------eccchhhhh
Confidence 56778643 567788888888653 5778999999999999999999876 22 333 122111000
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccc
Q 036714 204 KLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 204 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
+. .+. ...+++.++....+.-++++++|.++.
T Consensus 222 -----mf--VGv-------GAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 222 -----MF--VGV-------GASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred -----hh--cCC-------CcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 00 000 122445555555566689999998863
No 451
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.03 E-value=0.23 Score=58.33 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=34.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 210 (932)
-++..|.|.+|+||||+++.+..........-...+.+.....-...++...+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 478999999999999999999887633211112345555444444445544443
No 452
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.03 E-value=0.08 Score=50.61 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 453
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.03 E-value=1.5 Score=49.24 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQK 183 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 183 (932)
-..|++||+.|+|||||.+-++-+...
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p 442 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQP 442 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhcccc
Confidence 467999999999999999999988743
No 454
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.99 E-value=0.35 Score=47.27 Aligned_cols=117 Identities=18% Similarity=0.052 Sum_probs=61.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC---ccCHHHHHHHHH--H--HHhcc--ccc-cc-hHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLYLIKLQTEIA--T--ALKQS--LLE-NE-DKVR 225 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~--~--~l~~~--~~~-~~-~~~~ 225 (932)
...|-|+|..|-||||.|..++-+.. .+--.+..+..-. ...-...++.+- . +.+.. +.. .. ....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 47899999999999999999988763 3333444443322 223333333210 0 00110 000 11 1111
Q ss_pred H----HHHHHHHHhcCCeEEEEEeccccc-----cccccccCCCCCCCCCcEEEEEeCCc
Q 036714 226 R----AGELLGMLKAKEKFVLILDDMWEA-----FRLEEVGIPEPSEENGCKLVVTTRSV 276 (932)
Q Consensus 226 ~----~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTTR~~ 276 (932)
. .....+.+..++-=+||||.+-.. .+.+++...+.....+.-||+|-|..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1 222233344556679999998532 22333333333334567899999974
No 455
>PRK06851 hypothetical protein; Provisional
Probab=92.99 E-value=0.65 Score=50.70 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=33.8
Q ss_pred CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 154 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 154 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
.+--+++.|.|++|+|||||++.++.... ...++..++-|.+++
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 44468899999999999999999999873 345666666555554
No 456
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.96 E-value=0.082 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.7
Q ss_pred EEEEeCCCChHHHHHHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~ 180 (932)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999975
No 457
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.93 E-value=0.086 Score=47.77 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999765
No 458
>PRK08149 ATP synthase SpaL; Validated
Probab=92.93 E-value=0.42 Score=53.27 Aligned_cols=86 Identities=15% Similarity=0.292 Sum_probs=49.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-cCHHHHHHHHHHHHhcc------ccccchHHH----
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LYLIKLQTEIATALKQS------LLENEDKVR---- 225 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~------~~~~~~~~~---- 225 (932)
-..++|+|..|+|||||++.+++.. .-+.++...+... ..+.++..+........ ...+.+...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 4789999999999999999998753 2233444444443 34445555554432211 001111111
Q ss_pred -----HHHHHHHHHhcCCeEEEEEecccc
Q 036714 226 -----RAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 226 -----~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
...+.++ .+++++|+++||+-.
T Consensus 226 ~~~a~tiAE~fr--~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFR--DQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHH--HcCCCEEEEccchHH
Confidence 1122222 258999999999965
No 459
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.89 E-value=0.32 Score=54.13 Aligned_cols=25 Identities=20% Similarity=0.559 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-..++|+|..|+|||||++.+....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~ 164 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT 164 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC
Confidence 4689999999999999999888754
No 460
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.89 E-value=0.088 Score=50.96 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHh
Q 036714 160 IGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
|.|.|.+|+|||||++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999874
No 461
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.89 E-value=0.13 Score=55.11 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=28.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY 201 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 201 (932)
++|.+.|-||+||||+|.+.+-..... -..+.-++.....+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~---G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR---GKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT---TS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC---CCCeeEeecCCCcc
Confidence 688999999999999999988877432 23355554444333
No 462
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.87 E-value=0.14 Score=53.67 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchH
Q 036714 144 VVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDK 223 (932)
Q Consensus 144 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 223 (932)
..+.+..++ ...-.+|.|.|+.|.||||+++.+.+... ..-..++.+.-........+ .++... .. .
T Consensus 68 ~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~~-----~q~~v~--~~--~ 134 (264)
T cd01129 68 NLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPGI-----NQVQVN--EK--A 134 (264)
T ss_pred HHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCCc-----eEEEeC--Cc--C
Confidence 334444444 33457899999999999999999887652 11122333321111111100 011100 00 0
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecccccccccc
Q 036714 224 VRRAGELLGMLKAKEKFVLILDDMWEAFRLEE 255 (932)
Q Consensus 224 ~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~ 255 (932)
.......++..++..+=.|+++++.+.+....
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 11233444555566788899999998765443
No 463
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.87 E-value=0.073 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|+|+|+.|+|||||++.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999864
No 464
>PTZ00494 tuzin-like protein; Provisional
Probab=92.87 E-value=3.7 Score=45.11 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=90.9
Q ss_pred cccccccch-HHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHH
Q 036714 133 MATLAGEKT-KKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIAT 211 (932)
Q Consensus 133 ~~~~vGr~~-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 211 (932)
...+|.|+. |.....++..+....++++.+.|.-|.||++|.+....... -..++|++....| -+..|.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~------~paV~VDVRg~ED---tLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG------VALVHVDVGGTED---TLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC------CCeEEEEecCCcc---hHHHHHH
Confidence 367888854 23344445555555689999999999999999998887641 2367788876544 4577788
Q ss_pred HHhccccc-cchHHHHHHHHHH---HHhcCCeEEEEEeccccccccccc---cCCCCCCCCCcEEEEEeCCcccccccc-
Q 036714 212 ALKQSLLE-NEDKVRRAGELLG---MLKAKEKFVLILDDMWEAFRLEEV---GIPEPSEENGCKLVVTTRSVGICRSMG- 283 (932)
Q Consensus 212 ~l~~~~~~-~~~~~~~~~~l~~---~l~~~kr~LlVlDdv~~~~~~~~l---~~~~~~~~~gs~iivTTR~~~v~~~~~- 283 (932)
+|+.+.-+ -.+..+-+.+... ....++.=+||+- +.+-..+..+ ...+.....-|.|++---.+.+.....
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhcc
Confidence 88875332 1233333322222 1123454455553 1111111111 001112234566776444433322111
Q ss_pred ---ceeEeccCCCHHHHHHHHHHhh
Q 036714 284 ---CKEVRVQPLSNEEALNLFLDKV 305 (932)
Q Consensus 284 ---~~~~~l~~L~~~~~~~lf~~~~ 305 (932)
-+.|-+++++.++|.+.-.+..
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhccc
Confidence 1228899999999998877653
No 465
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.85 E-value=0.097 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 466
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.85 E-value=0.084 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|+|++|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999875
No 467
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.84 E-value=0.47 Score=53.25 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=54.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhcc------ccccchHHHH--
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQS------LLENEDKVRR-- 226 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~-- 226 (932)
.-.-++|.|.+|+|||||+.++...... ++-+.++++-+++.. .+.++..++...=... ...+.+...+
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~--~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3477999999999999999999877632 222457777776654 3455555554431110 0011111111
Q ss_pred ----HHHHHHHH--hcCCeEEEEEecccc
Q 036714 227 ----AGELLGML--KAKEKFVLILDDMWE 249 (932)
Q Consensus 227 ----~~~l~~~l--~~~kr~LlVlDdv~~ 249 (932)
+..+.+.+ .+++++|+++|++-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 11122222 267999999999964
No 468
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.84 E-value=0.19 Score=52.85 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=38.8
Q ss_pred ccccccch-HHHHHHHHHHhcCCC--eeEEEEEeCCCChHHHHHHHHHHHHhhccCCC
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGDK--VTKIGVWGMGGIGKTTIMKEINNRLQKETNKF 188 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f 188 (932)
..+||... .++..-+++....++ -+.|.|+|++|.|||+||-.+.+... ..-.|
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG-~dvPF 95 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELG-EDVPF 95 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhC-CCCCc
Confidence 67899743 233444556665553 58999999999999999999999883 33344
No 469
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.83 E-value=0.071 Score=51.61 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 470
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.81 E-value=0.18 Score=54.10 Aligned_cols=48 Identities=25% Similarity=0.254 Sum_probs=34.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQT 207 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 207 (932)
.+++.+.|.||+||||+|.+.+-.... ....++-|++....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~---~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE---SGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH---cCCcEEEEEeCCCCchHhhhc
Confidence 478999999999999999997776632 224477777666666555543
No 471
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.81 E-value=0.38 Score=51.56 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=35.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEI 209 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 209 (932)
-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4689999999999999999999863 33578888777654 344555543
No 472
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.80 E-value=0.37 Score=50.05 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=51.5
Q ss_pred eeEEEEEeCCCChHHHHH-HHHHHHHhhccCCCcEE-EEEEECCcc-CHHHHHHHHHHHHhc-------cccccchHH--
Q 036714 157 VTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNVV-IWVTVSQPL-YLIKLQTEIATALKQ-------SLLENEDKV-- 224 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-- 224 (932)
-.-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. .+.++.+++.+.-.. ...++....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 467899999999999996 5566542 22333 666666654 455555555432111 011111111
Q ss_pred ------HHHHHHHHHHhcCCeEEEEEeccccc-cccccc
Q 036714 225 ------RRAGELLGMLKAKEKFVLILDDMWEA-FRLEEV 256 (932)
Q Consensus 225 ------~~~~~l~~~l~~~kr~LlVlDdv~~~-~~~~~l 256 (932)
..+.+.++. +++.+|+++||+-.. ..+.++
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHH
Confidence 112222222 578999999999653 334443
No 473
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.77 E-value=0.63 Score=49.34 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=35.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIAT 211 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 211 (932)
-.++.|.|.+|+||||++.+++..... .+-..++|++...+ ..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~--~~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT--QHGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH--hcCceEEEEEcccC--HHHHHHHHHH
Confidence 368889999999999999999887532 22456888877653 3445444433
No 474
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.70 E-value=0.1 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEIN 178 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~ 178 (932)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3679999999999999999976
No 475
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.70 E-value=0.073 Score=64.47 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=85.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc---cCHHHH------HHHHHHHHhccccccchHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP---LYLIKL------QTEIATALKQSLLENEDKVRRA 227 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~------~~~i~~~l~~~~~~~~~~~~~~ 227 (932)
..++.|+|+.|.||||+.+.+....-..... .+|.+... .....+ -+.+.+.+.. -.......
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LSt----fS~~m~~~ 393 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEIPYFEEIFADIGDEQSIEQNLST----FSGHMKNI 393 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccccchhheeeecChHhHHhhhhhH----HHHHHHHH
Confidence 4789999999999999999998662111111 01111000 000000 0111111110 11112222
Q ss_pred HHHHHHHhcCCeEEEEEeccccccc---cc----cccCCCCCCCCCcEEEEEeCCcccccccccee----EeccCCCHHH
Q 036714 228 GELLGMLKAKEKFVLILDDMWEAFR---LE----EVGIPEPSEENGCKLVVTTRSVGICRSMGCKE----VRVQPLSNEE 296 (932)
Q Consensus 228 ~~l~~~l~~~kr~LlVlDdv~~~~~---~~----~l~~~~~~~~~gs~iivTTR~~~v~~~~~~~~----~~l~~L~~~~ 296 (932)
..++... ..+-|+++|..-...+ -. .+...+. ..|+.+|+||...++........ ..+. ++.+
T Consensus 394 ~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~- 467 (771)
T TIGR01069 394 SAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE- 467 (771)
T ss_pred HHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-
Confidence 2333322 4689999999864322 11 1222222 35788999999876543221111 1111 1111
Q ss_pred HHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHhcc
Q 036714 297 ALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRGR 360 (932)
Q Consensus 297 ~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~ 360 (932)
.... .-.+-.+. + -...|-+|++++ |+|-.+..-|..+... ....+..++.++...
T Consensus 468 ~l~p-~Ykl~~G~---~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 468 TLSP-TYKLLKGI---P--GESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSAL 523 (771)
T ss_pred CCce-EEEECCCC---C--CCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 0000 00011110 1 124577787776 7888888877776552 334566666665433
No 476
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.69 E-value=0.17 Score=50.13 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=30.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. +..+..+.-...+ ..-|.++|++|+|||++|+.+..-.
T Consensus 3 ~dI~GQ--e~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQ--EEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSST--HHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCc--HHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 457887 5555555444444 3688999999999999999998654
No 477
>PRK13975 thymidylate kinase; Provisional
Probab=92.66 E-value=0.1 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..|+|.|+.|+||||+|+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.65 E-value=0.087 Score=52.27 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997754
No 479
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=0.95 Score=52.72 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=76.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
..++.++|.+|+||||+++.++.......-.+++.-.++-+...+ .......+.....
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~----------------------etkl~~~f~~a~~ 488 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT----------------------ETKLQAIFSRARR 488 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh----------------------HHHHHHHHHHHhh
Confidence 478899999999999999999998732111122111111111111 1111112222222
Q ss_pred CCeEEEEEecccc-------ccc------cccccC--CCCCCCCCcEEEEEeC-Ccccccccccee---EeccCCCHHHH
Q 036714 237 KEKFVLILDDMWE-------AFR------LEEVGI--PEPSEENGCKLVVTTR-SVGICRSMGCKE---VRVQPLSNEEA 297 (932)
Q Consensus 237 ~kr~LlVlDdv~~-------~~~------~~~l~~--~~~~~~~gs~iivTTR-~~~v~~~~~~~~---~~l~~L~~~~~ 297 (932)
-.+..|.|-+++- .++ ++.+.. ..+...++.-+|.||. .+++........ ++++.+++++-
T Consensus 489 ~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qR 568 (953)
T KOG0736|consen 489 CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQR 568 (953)
T ss_pred cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHH
Confidence 3455666555431 011 000000 1111233444444443 345443332222 88999999999
Q ss_pred HHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHH
Q 036714 298 LNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLA 333 (932)
Q Consensus 298 ~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 333 (932)
.++|+-.+..... ....--+.++++|.|.-++
T Consensus 569 l~iLq~y~~~~~~----n~~v~~k~~a~~t~gfs~~ 600 (953)
T KOG0736|consen 569 LEILQWYLNHLPL----NQDVNLKQLARKTSGFSFG 600 (953)
T ss_pred HHHHHHHHhcccc----chHHHHHHHHHhcCCCCHH
Confidence 9999987654321 1223345677888877654
No 480
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=0.29 Score=48.69 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.0
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.++-|.++|++|+|||-||++|+++-
T Consensus 187 dpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 346788999999999999999999975
No 481
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.59 E-value=0.44 Score=53.05 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=54.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc-CCCc---------EEEEEEECCccCHHHHHHHHHHHHh-ccc------cc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET-NKFN---------VVIWVTVSQPLYLIKLQTEIATALK-QSL------LE 219 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~------~~ 219 (932)
-.-++|.|..|+|||||+.++.+...... ...| .++++-+++.....+.+...+..-+ ... ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 46799999999999999999998753100 0012 5677777777555555544444433 110 01
Q ss_pred cchHHHH------HHHHHHHHh--cCCeEEEEEecccc
Q 036714 220 NEDKVRR------AGELLGMLK--AKEKFVLILDDMWE 249 (932)
Q Consensus 220 ~~~~~~~------~~~l~~~l~--~~kr~LlVlDdv~~ 249 (932)
+.+...+ +..+.+.+. +++++|+++||+-.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111111 111223332 47899999999954
No 482
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.56 E-value=0.42 Score=53.75 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=23.3
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..-..++|+|..|+|||||++.+....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 345789999999999999999888754
No 483
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.55 E-value=0.12 Score=48.37 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|+.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999998887764
No 484
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.53 E-value=0.1 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|.|+|+.|+||||+|+.+++..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999999875
No 485
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.50 E-value=0.1 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=22.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHh
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
|++|+|+.|+|||||+.++.....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999873
No 486
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.50 E-value=0.27 Score=49.29 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=22.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHh
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
+|+|.|+.|+||||+++.+++...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999873
No 487
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.50 E-value=0.093 Score=47.98 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+-|.|.|-+|+||||+|.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3568899999999999999999653
No 488
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.50 E-value=0.2 Score=53.69 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=35.1
Q ss_pred ccccccch-HHHHHHHHHHhcCCC--eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGDK--VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+||+.. .++..-+++.....+ -+.|.+.|++|.|||+||..+++..
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 67999744 244555666666654 5899999999999999999999987
No 489
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=92.49 E-value=0.56 Score=43.32 Aligned_cols=26 Identities=38% Similarity=0.472 Sum_probs=23.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..||.|.|.+|.||||+++++.+...
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhC
Confidence 35899999999999999999999873
No 490
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.48 E-value=0.1 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.|++|+|++|.|||||.+.+..-.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc
Confidence 4799999999999999999987653
No 491
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.46 E-value=0.12 Score=52.10 Aligned_cols=26 Identities=46% Similarity=0.616 Sum_probs=23.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...|.++||+|.||||+.+.++.+..
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHh
Confidence 56888999999999999999999874
No 492
>PRK14529 adenylate kinase; Provisional
Probab=92.45 E-value=0.42 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|.|.|++|+||||+|+.++...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999886
No 493
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.45 E-value=0.091 Score=29.11 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=9.5
Q ss_pred CCccEEEecccCCCcccc
Q 036714 844 NSLQEIEVHRCPKLKRLS 861 (932)
Q Consensus 844 p~L~~L~i~~C~~L~~lp 861 (932)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777777775 77665
No 494
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.44 E-value=0.22 Score=57.88 Aligned_cols=61 Identities=10% Similarity=0.290 Sum_probs=39.5
Q ss_pred ccccccchHHHHHHHHHHhc--CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 134 ATLAGEKTKKVVEEIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
..++|+. ..+.++.+.+. .....-|.|+|..|+|||++|+.+.+.... .-...+.|++..-
T Consensus 187 ~~iig~s--~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---~~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQS--PAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR---ADKPLVYLNCAAL 249 (509)
T ss_pred CceeecC--HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc---CCCCeEEEEcccC
Confidence 5688884 35555544443 123467889999999999999999987522 1223455665543
No 495
>PRK15453 phosphoribulokinase; Provisional
Probab=92.40 E-value=0.13 Score=53.30 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.7
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+..+|+|.|.+|+||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999766
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.35 E-value=0.11 Score=51.31 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 497
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.31 E-value=0.29 Score=48.89 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..|+|.|..|+||||+++.+++...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999873
No 498
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.28 E-value=0.47 Score=53.14 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=49.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccc------cccchHHHH---
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSL------LENEDKVRR--- 226 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~--- 226 (932)
.-..++|.|..|+|||||++.++.... . -..+++....+...+.++.+.+...-+... ..+.+...+
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQ---C-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---C-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 457899999999999999999987541 1 123444333334445555555443311100 011111111
Q ss_pred ------HHHHHHHHhcCCeEEEEEecccc
Q 036714 227 ------AGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 227 ------~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
+.+.++ -+++.+|+++||+-.
T Consensus 238 ~~~a~tiAEyfr--d~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFR--DRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHH--HcCCCEEEeccchhH
Confidence 122222 258899999999865
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.27 E-value=0.13 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++.|.|++|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678999999999999999999864
No 500
>PLN02200 adenylate kinase family protein
Probab=92.24 E-value=0.13 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|.|.|++|+||||+|+.+++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998865
Done!