Query 036714
Match_columns 932
No_of_seqs 562 out of 5462
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-44 6.7E-49 421.2 26.9 310 137-471 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 7.3E-38 2.5E-42 366.8 20.5 284 135-463 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6.6E-37 2.3E-41 397.4 28.3 313 130-470 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.4E-34 2.2E-38 338.0 25.3 309 131-468 121-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-23 3.6E-28 251.4 24.0 155 476-633 18-176 (606)
6 2z63_A TOLL-like receptor 4, v 99.9 1.2E-23 4.1E-28 249.2 21.6 156 477-636 15-175 (570)
7 4ecn_A Leucine-rich repeat pro 99.9 5.8E-24 2E-28 257.6 18.1 351 503-892 436-843 (876)
8 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-23 4.3E-28 250.8 20.0 111 491-602 55-168 (606)
9 4eco_A Uncharacterized protein 99.9 2.4E-23 8.3E-28 248.2 15.6 351 503-893 194-604 (636)
10 2z81_A CD282 antigen, TOLL-lik 99.9 2.5E-22 8.6E-27 236.5 23.1 193 478-675 14-211 (549)
11 3t6q_A CD180 antigen; protein- 99.9 2.5E-22 8.4E-27 239.6 22.2 163 477-643 20-188 (606)
12 3t6q_A CD180 antigen; protein- 99.9 1.4E-22 4.7E-27 241.8 18.8 179 492-673 129-363 (606)
13 4eco_A Uncharacterized protein 99.9 6.1E-23 2.1E-27 244.7 15.5 320 531-887 197-577 (636)
14 3o6n_A APL1; leucine-rich repe 99.9 6.2E-22 2.1E-26 222.2 22.1 306 514-890 43-353 (390)
15 4ecn_A Leucine-rich repeat pro 99.9 2.2E-22 7.4E-27 243.8 18.5 349 482-860 438-842 (876)
16 3j0a_A TOLL-like receptor 5; m 99.9 6.3E-22 2.2E-26 244.3 22.8 357 476-862 11-398 (844)
17 2z7x_B TOLL-like receptor 1, v 99.9 6.1E-22 2.1E-26 231.5 21.3 373 477-888 8-480 (520)
18 3v47_A TOLL-like receptor 5B a 99.9 5.5E-22 1.9E-26 227.8 20.2 357 477-889 18-408 (455)
19 2id5_A Lingo-1, leucine rich r 99.9 1.7E-21 5.8E-26 225.0 23.6 309 496-855 15-331 (477)
20 4fmz_A Internalin; leucine ric 99.9 1.1E-21 3.9E-26 216.4 20.8 168 492-672 44-211 (347)
21 1o6v_A Internalin A; bacterial 99.9 3E-21 1E-25 221.9 24.7 295 491-854 67-363 (466)
22 4g8a_A TOLL-like receptor 4; l 99.9 8.3E-22 2.8E-26 236.6 20.0 149 478-630 40-193 (635)
23 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-21 4.1E-26 223.3 19.3 163 492-674 42-205 (457)
24 3oja_B Anopheles plasmodium-re 99.9 1.9E-21 6.6E-26 230.5 21.8 305 514-889 49-358 (597)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.3E-21 2.5E-25 224.3 26.4 140 476-622 38-181 (562)
26 2id5_A Lingo-1, leucine rich r 99.9 2E-21 6.7E-26 224.4 19.0 305 477-829 19-331 (477)
27 3rgz_A Protein brassinosteroid 99.9 2.7E-21 9.3E-26 236.1 20.0 349 491-865 199-559 (768)
28 4fmz_A Internalin; leucine ric 99.9 6.2E-21 2.1E-25 210.5 20.8 288 480-855 55-344 (347)
29 3rgz_A Protein brassinosteroid 99.9 1.3E-21 4.4E-26 239.0 16.6 180 492-673 294-479 (768)
30 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-20 4.3E-25 227.9 25.1 163 477-643 12-180 (680)
31 3o6n_A APL1; leucine-rich repe 99.9 2.5E-21 8.4E-26 217.3 16.9 300 491-855 44-350 (390)
32 2z81_A CD282 antigen, TOLL-lik 99.9 3.9E-21 1.3E-25 226.3 19.3 359 489-888 47-509 (549)
33 1o6v_A Internalin A; bacterial 99.9 1.2E-20 4E-25 217.0 21.2 330 491-890 45-389 (466)
34 2z7x_B TOLL-like receptor 1, v 99.9 2.8E-20 9.7E-25 217.3 24.2 141 495-644 3-148 (520)
35 2z63_A TOLL-like receptor 4, v 99.8 4.9E-20 1.7E-24 218.0 24.6 173 495-674 10-191 (570)
36 3oja_B Anopheles plasmodium-re 99.8 7.6E-21 2.6E-25 225.3 16.8 299 492-855 51-356 (597)
37 3bz5_A Internalin-J, INLJ; leu 99.8 2E-20 6.9E-25 213.2 18.5 315 512-889 38-352 (457)
38 3v47_A TOLL-like receptor 5B a 99.8 2.2E-20 7.5E-25 214.4 17.7 340 495-885 13-380 (455)
39 3j0a_A TOLL-like receptor 5; m 99.8 1.7E-19 5.9E-24 222.5 23.6 256 610-888 266-559 (844)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.9E-19 6.6E-24 212.1 22.2 142 494-644 33-179 (562)
41 1ziw_A TOLL-like receptor 3; i 99.8 4.2E-19 1.5E-23 214.6 23.8 174 495-675 7-186 (680)
42 4fcg_A Uncharacterized protein 99.8 3E-20 1E-24 202.5 11.0 148 492-643 81-238 (328)
43 1xku_A Decorin; proteoglycan, 99.8 3.8E-19 1.3E-23 194.6 19.3 142 494-642 33-179 (330)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-19 6.1E-24 197.3 16.3 167 493-672 34-205 (332)
45 4fcg_A Uncharacterized protein 99.8 6.9E-19 2.4E-23 191.7 18.7 237 540-893 80-318 (328)
46 1ogq_A PGIP-2, polygalacturona 99.8 1E-19 3.4E-24 197.1 10.7 148 493-642 51-205 (313)
47 2ft3_A Biglycan; proteoglycan, 99.8 4.8E-19 1.6E-23 193.9 16.0 261 517-856 34-306 (332)
48 1jl5_A Outer protein YOPM; leu 99.8 3.1E-18 1.1E-22 194.9 22.0 278 491-854 90-367 (454)
49 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-19 4.6E-24 196.2 10.2 251 516-861 50-308 (313)
50 3g06_A SSPH2 (leucine-rich rep 99.8 2.8E-18 9.5E-23 201.3 20.8 154 493-673 41-194 (622)
51 1jl5_A Outer protein YOPM; leu 99.8 2.2E-18 7.6E-23 196.2 19.4 296 479-858 101-409 (454)
52 1xku_A Decorin; proteoglycan, 99.8 3.7E-18 1.2E-22 186.7 18.6 150 517-673 32-184 (330)
53 2z80_A TOLL-like receptor 2, v 99.8 2.7E-18 9.1E-23 189.7 16.4 189 479-673 41-235 (353)
54 2z80_A TOLL-like receptor 2, v 99.8 3.8E-18 1.3E-22 188.5 15.6 169 497-672 36-210 (353)
55 2z66_A Variable lymphocyte rec 99.8 1.2E-18 4E-23 188.5 11.1 142 496-642 11-158 (306)
56 4g8a_A TOLL-like receptor 4; l 99.7 2.6E-17 8.8E-22 197.4 21.0 143 496-643 35-182 (635)
57 3zyi_A Leucine-rich repeat-con 99.7 6.3E-18 2.2E-22 193.3 14.9 241 494-829 56-301 (452)
58 1ozn_A Reticulon 4 receptor; N 99.7 2.7E-18 9.1E-23 183.6 10.5 144 495-642 14-161 (285)
59 3zyi_A Leucine-rich repeat-con 99.7 8.8E-18 3E-22 192.1 15.5 188 477-672 62-254 (452)
60 3zyj_A Leucine-rich repeat-con 99.7 8.9E-18 3E-22 191.4 15.5 186 478-671 52-242 (440)
61 1ozn_A Reticulon 4 receptor; N 99.7 3.8E-18 1.3E-22 182.4 10.9 190 477-671 19-212 (285)
62 3zyj_A Leucine-rich repeat-con 99.7 9.8E-18 3.4E-22 191.0 14.5 241 494-829 45-290 (440)
63 3o53_A Protein LRIM1, AGAP0063 99.7 3.4E-19 1.2E-23 193.5 1.7 168 495-672 13-181 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.7 9.6E-17 3.3E-21 188.2 20.8 248 477-829 48-295 (622)
65 2z66_A Variable lymphocyte rec 99.7 4.1E-17 1.4E-21 176.3 12.6 187 477-670 15-209 (306)
66 2o6q_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 168.3 14.7 190 477-672 24-217 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.7 4.2E-18 1.4E-22 184.9 -0.7 146 517-673 11-157 (317)
68 3oja_A Leucine-rich immune mol 99.6 1.3E-17 4.5E-22 191.7 1.2 150 513-672 31-181 (487)
69 1wwl_A Monocyte differentiatio 99.6 2.5E-17 8.5E-22 178.3 3.2 153 514-672 41-213 (312)
70 1z7x_W Ribonuclease inhibitor; 99.6 2.6E-18 8.8E-23 197.5 -5.2 163 708-889 256-440 (461)
71 2o6q_A Variable lymphocyte rec 99.6 9.3E-16 3.2E-20 162.2 14.2 173 493-672 17-193 (270)
72 2xwt_C Thyrotropin receptor; s 99.6 3.1E-16 1.1E-20 162.7 9.5 133 504-642 23-164 (239)
73 3ogk_B Coronatine-insensitive 99.6 2.8E-16 9.6E-21 186.6 10.2 326 492-860 164-528 (592)
74 2z62_A TOLL-like receptor 4, v 99.6 3.7E-16 1.3E-20 166.0 9.9 134 492-626 28-165 (276)
75 2z62_A TOLL-like receptor 4, v 99.6 1.6E-15 5.4E-20 161.1 14.3 161 497-663 12-176 (276)
76 2qen_A Walker-type ATPase; unk 99.6 1.2E-14 4E-19 160.3 21.3 293 130-464 8-349 (350)
77 1p9a_G Platelet glycoprotein I 99.6 1.3E-15 4.3E-20 162.6 12.7 173 492-672 10-184 (290)
78 2xwt_C Thyrotropin receptor; s 99.6 2.3E-15 7.7E-20 156.1 13.1 157 481-642 23-187 (239)
79 1z7x_W Ribonuclease inhibitor; 99.6 2.1E-17 7.3E-22 189.8 -2.5 349 492-886 3-408 (461)
80 1h6u_A Internalin H; cell adhe 99.6 2.1E-15 7E-20 162.7 12.7 121 514-642 39-159 (308)
81 2fna_A Conserved hypothetical 99.6 2.6E-14 9E-19 157.9 21.8 292 131-463 10-356 (357)
82 1p9a_G Platelet glycoprotein I 99.6 1.7E-15 5.9E-20 161.6 11.6 187 477-672 18-207 (290)
83 3m19_A Variable lymphocyte rec 99.6 8.5E-15 2.9E-19 153.0 16.4 162 478-643 23-188 (251)
84 3ogk_B Coronatine-insensitive 99.6 8.4E-16 2.9E-20 182.5 9.3 133 728-885 375-522 (592)
85 2p1m_B Transport inhibitor res 99.6 2.6E-16 9E-21 187.0 4.1 340 493-856 106-518 (594)
86 3m19_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 155.3 12.8 174 493-673 15-192 (251)
87 3oja_A Leucine-rich immune mol 99.6 1.8E-15 6.1E-20 173.9 10.6 124 540-673 33-157 (487)
88 4ay9_X Follicle-stimulating ho 99.6 1.8E-15 6.1E-20 166.5 9.8 77 753-852 178-254 (350)
89 2p1m_B Transport inhibitor res 99.6 1.8E-16 6.1E-21 188.4 1.4 297 514-827 103-441 (594)
90 1h6u_A Internalin H; cell adhe 99.6 7.6E-15 2.6E-19 158.2 13.0 169 491-673 40-208 (308)
91 1w5s_A Origin recognition comp 99.6 2.3E-14 7.9E-19 161.8 15.7 291 134-447 22-371 (412)
92 3rfs_A Internalin B, repeat mo 99.6 1.2E-14 4E-19 153.8 12.3 172 492-671 41-216 (272)
93 2ast_B S-phase kinase-associat 99.6 2.5E-15 8.4E-20 164.7 7.0 248 517-860 48-308 (336)
94 4ay9_X Follicle-stimulating ho 99.5 1.2E-14 4E-19 159.9 11.0 191 477-672 17-214 (350)
95 1h6t_A Internalin B; cell adhe 99.5 3.7E-14 1.3E-18 151.4 12.1 170 491-674 45-214 (291)
96 1wwl_A Monocyte differentiatio 99.5 1.3E-15 4.4E-20 164.8 0.3 196 539-763 93-307 (312)
97 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 142.2 14.5 145 494-643 21-168 (229)
98 2ast_B S-phase kinase-associat 99.5 2.2E-15 7.5E-20 165.1 1.7 171 494-671 49-233 (336)
99 3rfs_A Internalin B, repeat mo 99.5 1.5E-13 5.1E-18 145.3 14.7 152 489-644 60-215 (272)
100 2v9t_B SLIT homolog 2 protein 99.5 1.7E-13 5.7E-18 139.7 13.5 144 495-643 14-161 (220)
101 2v70_A SLIT-2, SLIT homolog 2 99.5 2.1E-13 7.1E-18 139.0 13.2 144 495-643 14-162 (220)
102 4ezg_A Putative uncharacterize 99.5 1.7E-13 5.8E-18 137.2 11.9 145 491-643 43-190 (197)
103 2xot_A Amphoterin-induced prot 99.5 1E-13 3.5E-18 153.1 10.5 171 495-672 21-201 (361)
104 2xot_A Amphoterin-induced prot 99.4 1.9E-13 6.4E-18 151.0 11.6 164 477-643 26-198 (361)
105 1m9s_A Internalin B; cell inva 99.4 1.2E-13 4.2E-18 161.7 10.5 170 491-674 42-211 (605)
106 3goz_A Leucine-rich repeat-con 99.4 8.4E-14 2.9E-18 153.9 8.5 173 498-673 4-209 (362)
107 2o6s_A Variable lymphocyte rec 99.4 9.9E-13 3.4E-17 132.9 14.5 145 495-644 10-158 (208)
108 2v9t_B SLIT homolog 2 protein 99.4 7.2E-13 2.5E-17 135.0 12.8 144 477-623 19-165 (220)
109 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 134.6 14.2 143 477-623 27-172 (229)
110 1xeu_A Internalin C; cellular 99.4 9.1E-14 3.1E-18 145.9 6.1 166 493-673 20-185 (263)
111 2ca6_A RAN GTPase-activating p 99.4 2.5E-14 8.5E-19 159.9 0.8 178 492-672 32-256 (386)
112 2ca6_A RAN GTPase-activating p 99.4 3.2E-14 1.1E-18 159.0 1.7 40 584-623 91-135 (386)
113 1h6t_A Internalin B; cell adhe 99.4 1.7E-12 5.9E-17 138.4 14.9 152 481-643 58-209 (291)
114 4ezg_A Putative uncharacterize 99.4 3.3E-13 1.1E-17 135.1 8.6 151 513-673 41-194 (197)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 1.1E-12 3.7E-17 133.7 12.1 143 478-623 20-166 (220)
116 1m9s_A Internalin B; cell inva 99.4 2.2E-13 7.5E-18 159.6 7.6 168 494-675 23-190 (605)
117 2o6s_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 129.1 14.7 154 478-642 16-173 (208)
118 1xeu_A Internalin C; cellular 99.4 2.3E-12 7.8E-17 135.2 13.3 142 491-643 40-181 (263)
119 4b8c_D Glucose-repressible alc 99.4 5.7E-13 2E-17 160.2 8.9 161 492-658 173-339 (727)
120 4glp_A Monocyte differentiatio 99.4 5E-13 1.7E-17 144.3 7.4 173 491-672 116-306 (310)
121 3cvr_A Invasion plasmid antige 99.3 2.5E-12 8.5E-17 148.9 12.7 130 493-643 60-189 (571)
122 2ell_A Acidic leucine-rich nuc 99.3 1.6E-12 5.5E-17 126.4 8.8 124 516-642 24-155 (168)
123 2je0_A Acidic leucine-rich nuc 99.3 1.2E-12 4E-17 124.6 6.3 124 516-642 17-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.3 2.9E-12 9.9E-17 124.5 8.2 133 491-628 23-165 (168)
125 3cvr_A Invasion plasmid antige 99.3 6.6E-12 2.3E-16 145.3 12.4 168 480-674 70-244 (571)
126 3goz_A Leucine-rich repeat-con 99.3 8.4E-13 2.9E-17 145.9 4.1 181 491-674 21-239 (362)
127 2v1u_A Cell division control p 99.3 1.5E-10 5.1E-15 129.2 21.8 289 134-447 19-351 (387)
128 4glp_A Monocyte differentiatio 99.3 3.3E-12 1.1E-16 137.8 7.9 149 491-643 144-303 (310)
129 2wfh_A SLIT homolog 2 protein 99.3 1.7E-11 5.7E-16 121.9 12.0 120 519-643 13-135 (193)
130 2qby_A CDC6 homolog 1, cell di 99.3 1.2E-10 4E-15 129.9 20.3 291 134-447 20-348 (386)
131 1fnn_A CDC6P, cell division co 99.3 1.1E-10 3.8E-15 130.3 19.1 289 134-447 17-351 (389)
132 1a9n_A U2A', U2A'; complex (nu 99.2 9.5E-12 3.2E-16 121.9 8.1 129 512-644 15-150 (176)
133 2qby_B CDC6 homolog 3, cell di 99.2 1.1E-09 3.8E-14 121.9 25.5 282 134-447 20-339 (384)
134 1w8a_A SLIT protein; signaling 99.2 2.5E-11 8.4E-16 120.7 10.7 119 520-642 12-134 (192)
135 1w8a_A SLIT protein; signaling 99.2 2.7E-11 9.2E-16 120.4 10.9 125 495-623 11-139 (192)
136 1dce_A Protein (RAB geranylger 99.2 6E-12 2.1E-16 146.5 6.3 138 494-641 425-567 (567)
137 2wfh_A SLIT homolog 2 protein 99.2 6.6E-11 2.3E-15 117.5 12.1 123 495-623 13-139 (193)
138 3qfl_A MLA10; coiled-coil, (CC 99.2 3.5E-11 1.2E-15 106.8 8.5 78 2-86 3-80 (115)
139 2je0_A Acidic leucine-rich nuc 99.2 1.7E-11 5.9E-16 116.4 6.1 127 539-668 15-148 (149)
140 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 113.9 12.0 119 520-643 11-133 (177)
141 1a9n_A U2A', U2A'; complex (nu 99.2 5.1E-11 1.7E-15 116.6 8.6 134 537-674 15-154 (176)
142 4b8c_D Glucose-repressible alc 99.1 2.8E-11 9.6E-16 145.5 6.9 115 508-625 216-331 (727)
143 2o6r_A Variable lymphocyte rec 99.1 2.7E-10 9.3E-15 111.5 12.1 125 494-623 9-137 (177)
144 1ds9_A Outer arm dynein; leuci 99.1 1.3E-12 4.3E-17 130.9 -5.4 132 529-666 37-180 (198)
145 1njg_A DNA polymerase III subu 99.1 7.8E-10 2.7E-14 114.5 13.7 194 134-340 23-230 (250)
146 2chg_A Replication factor C sm 99.1 1E-09 3.4E-14 111.9 13.5 183 134-338 17-204 (226)
147 1dce_A Protein (RAB geranylger 99.0 3.6E-10 1.2E-14 131.5 10.4 119 493-617 442-567 (567)
148 1ds9_A Outer arm dynein; leuci 99.0 1.6E-11 5.6E-16 122.8 -2.2 134 503-641 36-181 (198)
149 2r9u_A Variable lymphocyte rec 99.0 1.8E-09 6E-14 105.2 10.2 97 544-642 15-113 (174)
150 3g39_A Variable lymphocyte rec 99.0 2E-09 6.7E-14 104.4 10.1 98 543-643 11-111 (170)
151 2r9u_A Variable lymphocyte rec 98.9 1.9E-09 6.6E-14 104.8 9.1 104 519-627 15-122 (174)
152 1hqc_A RUVB; extended AAA-ATPa 98.9 8.9E-09 3.1E-13 111.6 12.5 174 133-341 11-214 (324)
153 3g39_A Variable lymphocyte rec 98.8 6.1E-09 2.1E-13 100.9 9.1 102 519-625 12-117 (170)
154 3sb4_A Hypothetical leucine ri 98.8 2.8E-09 9.6E-14 115.8 6.1 165 506-676 83-313 (329)
155 4fdw_A Leucine rich hypothetic 98.8 3.3E-08 1.1E-12 109.7 14.0 154 504-670 124-281 (401)
156 1sxj_B Activator 1 37 kDa subu 98.8 1.9E-08 6.5E-13 108.9 11.0 184 134-338 21-210 (323)
157 4fdw_A Leucine rich hypothetic 98.7 3.2E-07 1.1E-11 101.8 18.4 267 513-889 110-383 (401)
158 3sb4_A Hypothetical leucine ri 98.7 2.7E-08 9.2E-13 107.9 9.5 169 491-666 100-327 (329)
159 1iqp_A RFCS; clamp loader, ext 98.7 4.1E-08 1.4E-12 106.5 10.6 185 134-340 25-214 (327)
160 3te6_A Regulatory protein SIR3 98.7 2.6E-07 9E-12 97.5 15.5 170 134-305 20-211 (318)
161 4fs7_A Uncharacterized protein 98.6 5.4E-07 1.9E-11 100.3 16.7 132 503-642 58-193 (394)
162 2ifg_A High affinity nerve gro 98.6 5.8E-08 2E-12 106.2 8.5 95 546-642 13-111 (347)
163 2chq_A Replication factor C sm 98.5 5.1E-07 1.8E-11 97.3 13.9 181 133-338 16-204 (319)
164 2ifg_A High affinity nerve gro 98.5 1.2E-07 4.2E-12 103.6 8.6 100 521-623 13-116 (347)
165 3un9_A NLR family member X1; l 98.5 2.6E-08 8.9E-13 109.5 0.7 61 493-554 73-139 (372)
166 3un9_A NLR family member X1; l 98.4 1.1E-08 3.7E-13 112.6 -2.5 156 516-675 72-254 (372)
167 1jbk_A CLPB protein; beta barr 98.4 6.4E-07 2.2E-11 88.4 8.8 47 134-182 22-68 (195)
168 1jr3_A DNA polymerase III subu 98.4 1.2E-06 4E-11 96.8 11.2 192 134-338 16-221 (373)
169 1d2n_A N-ethylmaleimide-sensit 98.3 2.5E-05 8.4E-10 81.8 19.9 177 154-360 61-264 (272)
170 1sxj_D Activator 1 41 kDa subu 98.3 2E-06 6.9E-11 94.1 10.8 192 134-338 37-235 (353)
171 3e4g_A ATP synthase subunit S, 98.3 5.1E-07 1.8E-11 86.0 4.9 92 752-861 61-156 (176)
172 3bos_A Putative DNA replicatio 98.2 4.9E-07 1.7E-11 93.0 3.4 173 134-338 28-217 (242)
173 2z4s_A Chromosomal replication 98.2 9E-06 3.1E-10 91.2 13.8 184 134-337 105-305 (440)
174 3h4m_A Proteasome-activating n 98.2 1.3E-05 4.3E-10 84.7 14.3 176 133-336 16-229 (285)
175 4fs7_A Uncharacterized protein 98.2 9.2E-06 3.1E-10 90.3 13.3 320 491-881 70-393 (394)
176 3pfi_A Holliday junction ATP-d 98.2 3.3E-05 1.1E-09 83.8 17.3 170 133-338 28-227 (338)
177 3pvs_A Replication-associated 98.1 2.2E-05 7.5E-10 87.8 15.1 175 134-338 26-215 (447)
178 1sxj_A Activator 1 95 kDa subu 98.1 7.2E-06 2.5E-10 94.2 11.4 187 134-337 39-252 (516)
179 1sxj_E Activator 1 40 kDa subu 98.1 1.2E-05 4.2E-10 87.8 11.4 195 134-339 14-238 (354)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.1 0.0001 3.5E-09 76.5 17.8 180 134-337 6-221 (262)
181 3d8b_A Fidgetin-like protein 1 98.1 8.3E-05 2.8E-09 81.0 17.6 179 133-338 83-295 (357)
182 3uk6_A RUVB-like 2; hexameric 98.0 1.9E-05 6.3E-10 86.9 11.8 48 134-181 44-94 (368)
183 3eie_A Vacuolar protein sortin 98.0 0.0001 3.6E-09 79.0 17.1 178 133-337 17-227 (322)
184 3syl_A Protein CBBX; photosynt 98.0 1.2E-05 4E-10 86.1 9.6 132 156-306 66-218 (309)
185 3u61_B DNA polymerase accessor 98.0 3.2E-05 1.1E-09 83.3 12.9 175 134-336 26-214 (324)
186 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00015 5.1E-09 77.6 17.9 180 133-338 11-223 (322)
187 3e4g_A ATP synthase subunit S, 98.0 3.5E-06 1.2E-10 80.3 4.1 86 732-834 62-155 (176)
188 1a5t_A Delta prime, HOLB; zinc 98.0 5E-05 1.7E-09 82.0 13.8 169 142-337 8-204 (334)
189 2p65_A Hypothetical protein PF 98.0 2.1E-05 7.3E-10 76.8 9.6 47 134-182 22-68 (187)
190 3b9p_A CG5977-PA, isoform A; A 97.9 0.00026 8.8E-09 75.0 18.5 178 133-337 20-232 (297)
191 3vfd_A Spastin; ATPase, microt 97.9 0.00019 6.3E-09 79.4 17.3 179 132-337 113-325 (389)
192 4gt6_A Cell surface protein; l 97.9 0.00012 4.1E-09 81.2 15.7 305 504-853 51-366 (394)
193 1sxj_C Activator 1 40 kDa subu 97.9 4.8E-05 1.6E-09 82.5 11.6 180 134-336 25-210 (340)
194 1l8q_A Chromosomal replication 97.9 7.9E-05 2.7E-09 80.2 12.7 176 134-334 11-204 (324)
195 2ra8_A Uncharacterized protein 97.9 1E-05 3.4E-10 88.0 5.4 13 660-672 307-319 (362)
196 3pxg_A Negative regulator of g 97.8 0.00014 4.9E-09 82.2 14.8 148 134-306 180-339 (468)
197 2qp9_X Vacuolar protein sortin 97.8 0.00026 8.9E-09 76.9 15.9 178 133-337 50-260 (355)
198 2ra8_A Uncharacterized protein 97.8 1.1E-05 3.9E-10 87.6 4.1 140 512-657 168-329 (362)
199 2zan_A Vacuolar protein sortin 97.8 0.00027 9.2E-09 79.3 15.4 179 133-337 133-344 (444)
200 3cf0_A Transitional endoplasmi 97.7 0.00048 1.6E-08 73.0 15.7 171 134-333 15-223 (301)
201 3pxi_A Negative regulator of g 97.5 0.00062 2.1E-08 82.2 14.7 148 134-306 180-339 (758)
202 4h09_A Hypothetical leucine ri 97.5 0.002 6.7E-08 70.9 17.7 54 492-549 46-99 (379)
203 1qvr_A CLPB protein; coiled co 97.5 0.00027 9.2E-09 86.4 11.4 151 134-304 170-344 (854)
204 4gt6_A Cell surface protein; l 97.5 0.0014 4.8E-08 72.5 16.1 309 529-885 51-366 (394)
205 4b4t_J 26S protease regulatory 97.5 0.0026 8.8E-08 68.8 16.9 171 134-332 148-355 (405)
206 2gno_A DNA polymerase III, gam 97.5 0.00039 1.3E-08 73.4 10.4 145 142-305 3-152 (305)
207 4b4t_L 26S protease subunit RP 97.5 0.0041 1.4E-07 68.4 18.7 149 157-331 215-387 (437)
208 3n70_A Transport activator; si 97.4 5.1E-05 1.7E-09 70.8 3.0 45 135-181 2-48 (145)
209 3ec2_A DNA replication protein 97.4 0.00011 3.7E-09 71.5 5.3 116 142-276 20-143 (180)
210 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0011 3.6E-08 80.3 15.2 152 134-305 186-362 (758)
211 4b4t_I 26S protease regulatory 97.4 0.0061 2.1E-07 66.1 19.1 149 157-331 216-388 (437)
212 4b4t_M 26S protease regulatory 97.4 0.0035 1.2E-07 68.9 17.0 170 134-331 181-387 (434)
213 1io0_A Tropomodulin; LRR prote 97.3 4.9E-05 1.7E-09 74.2 1.6 104 538-642 33-159 (185)
214 3hu3_A Transitional endoplasmi 97.3 0.0023 7.7E-08 72.2 15.4 169 134-330 204-406 (489)
215 4b4t_H 26S protease regulatory 97.3 0.0044 1.5E-07 67.9 16.8 150 156-331 242-415 (467)
216 4b4t_K 26S protease regulatory 97.3 0.0052 1.8E-07 67.5 17.4 170 134-331 172-379 (428)
217 1lv7_A FTSH; alpha/beta domain 97.3 0.0029 1E-07 65.2 14.7 177 133-335 11-222 (257)
218 1io0_A Tropomodulin; LRR prote 97.3 8.3E-05 2.8E-09 72.6 2.6 110 512-623 32-164 (185)
219 2w58_A DNAI, primosome compone 97.2 0.00072 2.5E-08 66.9 8.3 60 134-196 25-90 (202)
220 3rw6_A Nuclear RNA export fact 97.2 0.0002 6.8E-09 73.6 4.2 61 539-600 168-233 (267)
221 1in4_A RUVB, holliday junction 97.2 0.0039 1.3E-07 66.9 14.5 49 287-338 175-223 (334)
222 2ce7_A Cell division protein F 97.2 0.0055 1.9E-07 68.5 15.8 172 134-331 16-221 (476)
223 1ofh_A ATP-dependent HSL prote 97.1 0.00091 3.1E-08 71.2 8.9 46 134-181 15-74 (310)
224 4fcw_A Chaperone protein CLPB; 97.1 0.00043 1.5E-08 73.8 6.3 59 135-198 18-85 (311)
225 3rw6_A Nuclear RNA export fact 97.1 0.00046 1.6E-08 70.9 5.9 78 514-593 168-257 (267)
226 2r62_A Cell division protease 97.1 0.00033 1.1E-08 72.9 4.5 48 134-181 11-68 (268)
227 3t15_A Ribulose bisphosphate c 96.9 0.0059 2E-07 64.1 13.0 25 157-181 36-60 (293)
228 2bjv_A PSP operon transcriptio 96.9 0.00082 2.8E-08 69.8 5.4 46 134-181 6-53 (265)
229 3pxi_A Negative regulator of g 96.7 0.00091 3.1E-08 80.7 4.4 60 134-198 491-559 (758)
230 1ojl_A Transcriptional regulat 96.6 0.0018 6.3E-08 68.4 6.2 45 135-181 3-49 (304)
231 2cvh_A DNA repair and recombin 96.6 0.0067 2.3E-07 60.6 10.0 44 157-206 20-63 (220)
232 3cf2_A TER ATPase, transitiona 96.6 0.018 6.2E-07 68.3 14.6 173 134-333 204-409 (806)
233 1ixz_A ATP-dependent metallopr 96.5 0.032 1.1E-06 57.1 14.5 146 160-331 52-221 (254)
234 3m6a_A ATP-dependent protease 96.5 0.016 5.4E-07 66.5 13.0 46 134-181 81-132 (543)
235 1iy2_A ATP-dependent metallopr 96.3 0.047 1.6E-06 56.8 14.3 146 160-331 76-245 (278)
236 3io5_A Recombination and repai 96.2 0.018 6.2E-07 59.7 10.2 87 158-250 29-123 (333)
237 2kjq_A DNAA-related protein; s 96.2 0.0054 1.8E-07 57.0 5.7 40 156-198 35-74 (149)
238 2c9o_A RUVB-like 1; hexameric 96.2 0.0095 3.2E-07 67.0 8.8 46 134-181 37-87 (456)
239 1n0w_A DNA repair protein RAD5 96.2 0.022 7.7E-07 57.7 10.9 92 157-249 24-130 (243)
240 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0037 1.3E-07 65.2 4.5 23 158-180 124-146 (331)
241 2i1q_A DNA repair and recombin 96.1 0.023 7.8E-07 60.6 11.0 58 157-215 98-168 (322)
242 2z43_A DNA repair and recombin 96.1 0.019 6.6E-07 61.1 10.4 58 157-215 107-167 (324)
243 3hr8_A Protein RECA; alpha and 96.1 0.017 5.6E-07 61.9 9.7 85 157-249 61-150 (356)
244 1v5w_A DMC1, meiotic recombina 96.1 0.03 1E-06 60.2 11.7 58 157-215 122-182 (343)
245 2dhr_A FTSH; AAA+ protein, hex 96.1 0.045 1.6E-06 61.5 13.5 172 134-331 31-236 (499)
246 4h09_A Hypothetical leucine ri 96.0 0.014 4.9E-07 63.9 9.2 130 507-642 208-341 (379)
247 3ice_A Transcription terminati 95.9 0.011 3.7E-07 63.0 7.1 44 156-200 173-216 (422)
248 1ypw_A Transitional endoplasmi 95.9 0.017 5.9E-07 69.5 9.9 128 157-307 238-387 (806)
249 1g5t_A COB(I)alamin adenosyltr 95.7 0.012 4.1E-07 56.7 5.7 113 157-276 28-163 (196)
250 3c8u_A Fructokinase; YP_612366 95.6 0.011 3.6E-07 58.7 5.4 40 143-182 6-47 (208)
251 1r6b_X CLPA protein; AAA+, N-t 95.6 0.014 4.6E-07 70.5 7.1 46 134-181 458-512 (758)
252 4a74_A DNA repair and recombin 95.6 0.071 2.4E-06 53.4 11.5 46 157-202 25-73 (231)
253 2zr9_A Protein RECA, recombina 95.6 0.032 1.1E-06 59.8 9.2 85 157-249 61-150 (349)
254 2x8a_A Nuclear valosin-contain 95.5 0.031 1.1E-06 57.9 8.4 125 160-306 47-192 (274)
255 3lda_A DNA repair protein RAD5 95.5 0.054 1.8E-06 59.1 10.7 92 157-249 178-284 (400)
256 2qgz_A Helicase loader, putati 95.4 0.022 7.6E-07 60.1 7.1 49 134-182 124-177 (308)
257 1xp8_A RECA protein, recombina 95.3 0.045 1.5E-06 59.0 9.3 85 157-249 74-163 (366)
258 1u94_A RECA protein, recombina 95.3 0.04 1.4E-06 59.2 8.8 85 157-249 63-152 (356)
259 2ehv_A Hypothetical protein PH 95.3 0.0093 3.2E-07 61.0 3.7 24 157-180 30-53 (251)
260 3dm5_A SRP54, signal recogniti 95.2 0.074 2.5E-06 58.4 10.9 27 156-182 99-125 (443)
261 1qvr_A CLPB protein; coiled co 95.2 0.011 3.8E-07 72.1 4.8 45 135-181 559-612 (854)
262 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.041 1.4E-06 55.3 7.9 38 157-197 23-60 (235)
263 1sky_E F1-ATPase, F1-ATP synth 94.9 0.068 2.3E-06 58.9 9.4 90 158-249 152-256 (473)
264 1jr3_D DNA polymerase III, del 94.9 0.1 3.5E-06 56.0 10.9 156 156-337 17-184 (343)
265 1odf_A YGR205W, hypothetical 3 94.9 0.12 4E-06 53.8 10.8 28 155-182 29-56 (290)
266 3co5_A Putative two-component 94.8 0.006 2E-07 56.3 0.5 44 135-181 5-51 (143)
267 3kb2_A SPBC2 prophage-derived 94.7 0.017 6E-07 54.9 3.7 24 158-181 2-25 (173)
268 1rz3_A Hypothetical protein rb 94.7 0.032 1.1E-06 54.8 5.6 39 143-181 5-46 (201)
269 1vma_A Cell division protein F 94.6 0.12 4.1E-06 54.1 10.0 26 157-182 104-129 (306)
270 1qhx_A CPT, protein (chloramph 94.6 0.018 6.3E-07 55.2 3.6 24 158-181 4-27 (178)
271 3kl4_A SRP54, signal recogniti 94.6 0.12 4E-06 56.8 10.2 26 157-182 97-122 (433)
272 2px0_A Flagellar biosynthesis 94.6 0.078 2.7E-06 55.4 8.4 26 157-182 105-130 (296)
273 3vaa_A Shikimate kinase, SK; s 94.4 0.022 7.4E-07 55.9 3.7 25 157-181 25-49 (199)
274 3lw7_A Adenylate kinase relate 94.4 0.02 6.8E-07 54.7 3.3 22 158-180 2-23 (179)
275 3trf_A Shikimate kinase, SK; a 94.3 0.025 8.6E-07 54.6 3.7 25 157-181 5-29 (185)
276 1pzn_A RAD51, DNA repair and r 94.3 0.13 4.4E-06 55.2 9.6 55 157-212 131-188 (349)
277 1kgd_A CASK, peripheral plasma 94.2 0.024 8.2E-07 54.6 3.4 24 158-181 6-29 (180)
278 2xxa_A Signal recognition part 94.2 0.17 6E-06 55.7 10.7 27 156-182 99-125 (433)
279 1zp6_A Hypothetical protein AT 94.2 0.024 8.1E-07 55.1 3.3 24 157-180 9-32 (191)
280 3e70_C DPA, signal recognition 94.2 0.31 1.1E-05 51.6 12.1 57 155-214 127-184 (328)
281 3uie_A Adenylyl-sulfate kinase 94.2 0.029 1E-06 55.0 3.9 28 155-182 23-50 (200)
282 1ly1_A Polynucleotide kinase; 94.1 0.027 9.1E-07 54.1 3.5 22 158-179 3-24 (181)
283 1kag_A SKI, shikimate kinase I 94.1 0.023 7.8E-07 54.2 3.0 24 158-181 5-28 (173)
284 3l0o_A Transcription terminati 94.1 0.016 5.5E-07 61.5 1.9 52 147-199 164-216 (427)
285 2ck3_D ATP synthase subunit be 94.1 0.23 7.9E-06 54.5 11.1 54 157-212 153-207 (482)
286 3rfe_A Platelet glycoprotein I 94.0 0.066 2.3E-06 48.2 5.7 55 496-554 12-68 (130)
287 1nks_A Adenylate kinase; therm 94.0 0.032 1.1E-06 54.2 3.9 25 158-182 2-26 (194)
288 2r6a_A DNAB helicase, replicat 94.0 0.72 2.5E-05 51.4 15.5 50 157-210 203-252 (454)
289 2yvu_A Probable adenylyl-sulfa 94.0 0.038 1.3E-06 53.4 4.3 27 156-182 12-38 (186)
290 3t61_A Gluconokinase; PSI-biol 93.9 0.026 9E-07 55.4 3.1 25 157-181 18-42 (202)
291 4eun_A Thermoresistant glucoki 93.9 0.033 1.1E-06 54.6 3.8 26 156-181 28-53 (200)
292 2hf9_A Probable hydrogenase ni 93.9 0.047 1.6E-06 54.6 4.9 36 146-181 27-62 (226)
293 1ls1_A Signal recognition part 93.8 0.14 4.9E-06 53.4 8.7 26 157-182 98-123 (295)
294 2rhm_A Putative kinase; P-loop 93.8 0.04 1.4E-06 53.5 4.2 25 157-181 5-29 (193)
295 2dr3_A UPF0273 protein PH0284; 93.8 0.11 3.8E-06 52.6 7.7 39 157-198 23-61 (247)
296 2ze6_A Isopentenyl transferase 93.8 0.036 1.2E-06 56.6 3.8 24 158-181 2-25 (253)
297 1kht_A Adenylate kinase; phosp 93.8 0.036 1.2E-06 53.8 3.7 24 158-181 4-27 (192)
298 3iij_A Coilin-interacting nucl 93.7 0.031 1.1E-06 53.7 3.1 25 157-181 11-35 (180)
299 1j8m_F SRP54, signal recogniti 93.7 0.15 5.2E-06 53.2 8.6 88 157-247 98-189 (297)
300 1knq_A Gluconate kinase; ALFA/ 93.7 0.039 1.3E-06 52.7 3.8 25 157-181 8-32 (175)
301 2q6t_A DNAB replication FORK h 93.7 1.7 5.8E-05 48.2 17.8 51 157-211 200-250 (444)
302 2r44_A Uncharacterized protein 93.7 0.038 1.3E-06 59.1 4.0 44 134-181 27-70 (331)
303 3bh0_A DNAB-like replicative h 93.7 0.27 9.3E-06 51.9 10.6 51 157-212 68-118 (315)
304 2wsm_A Hydrogenase expression/ 93.6 0.044 1.5E-06 54.6 4.1 38 144-181 17-54 (221)
305 3tr0_A Guanylate kinase, GMP k 93.6 0.036 1.2E-06 54.5 3.4 25 157-181 7-31 (205)
306 1via_A Shikimate kinase; struc 93.6 0.034 1.2E-06 53.2 3.1 24 158-181 5-28 (175)
307 1zuh_A Shikimate kinase; alpha 93.6 0.04 1.4E-06 52.2 3.6 25 157-181 7-31 (168)
308 2j37_W Signal recognition part 93.5 0.42 1.4E-05 53.6 12.3 27 156-182 100-126 (504)
309 3hws_A ATP-dependent CLP prote 93.5 0.062 2.1E-06 58.3 5.4 45 135-181 16-75 (363)
310 3rfe_A Platelet glycoprotein I 93.5 0.095 3.3E-06 47.1 5.7 52 590-643 11-64 (130)
311 2jaq_A Deoxyguanosine kinase; 93.5 0.042 1.4E-06 53.9 3.7 23 159-181 2-24 (205)
312 1g8p_A Magnesium-chelatase 38 93.5 0.039 1.3E-06 59.5 3.6 46 134-181 24-69 (350)
313 3tau_A Guanylate kinase, GMP k 93.5 0.04 1.4E-06 54.5 3.4 26 156-181 7-32 (208)
314 2bdt_A BH3686; alpha-beta prot 93.4 0.043 1.5E-06 53.2 3.6 22 158-179 3-24 (189)
315 1fx0_B ATP synthase beta chain 93.4 0.29 1E-05 53.9 10.4 53 157-211 165-218 (498)
316 2iyv_A Shikimate kinase, SK; t 93.4 0.035 1.2E-06 53.5 2.9 24 158-181 3-26 (184)
317 2ga8_A Hypothetical 39.9 kDa p 93.4 0.08 2.7E-06 56.1 5.7 31 152-182 19-49 (359)
318 1tev_A UMP-CMP kinase; ploop, 93.4 0.048 1.6E-06 53.0 3.8 25 157-181 3-27 (196)
319 1y63_A LMAJ004144AAA protein; 93.4 0.045 1.6E-06 52.8 3.6 24 157-180 10-33 (184)
320 3a00_A Guanylate kinase, GMP k 93.4 0.035 1.2E-06 53.7 2.8 24 158-181 2-25 (186)
321 1cke_A CK, MSSA, protein (cyti 93.3 0.045 1.5E-06 54.8 3.7 24 158-181 6-29 (227)
322 3umf_A Adenylate kinase; rossm 93.3 0.051 1.7E-06 53.7 3.9 26 156-181 28-53 (217)
323 2c95_A Adenylate kinase 1; tra 93.3 0.048 1.6E-06 53.1 3.8 25 157-181 9-33 (196)
324 2qor_A Guanylate kinase; phosp 93.3 0.038 1.3E-06 54.4 3.0 25 157-181 12-36 (204)
325 2bwj_A Adenylate kinase 5; pho 93.3 0.05 1.7E-06 53.2 3.8 25 157-181 12-36 (199)
326 1uf9_A TT1252 protein; P-loop, 93.3 0.051 1.7E-06 53.2 3.9 25 156-180 7-31 (203)
327 1ye8_A Protein THEP1, hypothet 93.2 0.051 1.8E-06 52.0 3.7 23 159-181 2-24 (178)
328 3cm0_A Adenylate kinase; ATP-b 93.2 0.053 1.8E-06 52.3 3.8 25 157-181 4-28 (186)
329 1ukz_A Uridylate kinase; trans 93.2 0.057 1.9E-06 53.0 4.1 26 156-181 14-39 (203)
330 2if2_A Dephospho-COA kinase; a 93.2 0.047 1.6E-06 53.6 3.5 22 158-179 2-23 (204)
331 3fwy_A Light-independent proto 93.2 0.046 1.6E-06 57.6 3.5 40 155-197 46-85 (314)
332 1um8_A ATP-dependent CLP prote 93.2 0.078 2.7E-06 57.8 5.5 25 157-181 72-96 (376)
333 2j41_A Guanylate kinase; GMP, 93.2 0.047 1.6E-06 53.7 3.4 25 157-181 6-30 (207)
334 3asz_A Uridine kinase; cytidin 93.2 0.051 1.7E-06 53.7 3.7 26 156-181 5-30 (211)
335 1e6c_A Shikimate kinase; phosp 93.2 0.044 1.5E-06 52.2 3.1 24 158-181 3-26 (173)
336 4gp7_A Metallophosphoesterase; 93.1 0.039 1.3E-06 52.5 2.7 22 157-178 9-30 (171)
337 3cmu_A Protein RECA, recombina 93.1 0.13 4.5E-06 66.5 8.1 84 157-248 1427-1515(2050)
338 1xjc_A MOBB protein homolog; s 93.1 0.057 1.9E-06 50.9 3.7 26 157-182 4-29 (169)
339 3ney_A 55 kDa erythrocyte memb 93.1 0.053 1.8E-06 52.6 3.6 26 156-181 18-43 (197)
340 1qf9_A UMP/CMP kinase, protein 93.1 0.058 2E-06 52.3 3.9 25 157-181 6-30 (194)
341 2plr_A DTMP kinase, probable t 93.1 0.056 1.9E-06 53.4 3.8 24 158-181 5-28 (213)
342 4a1f_A DNAB helicase, replicat 93.1 0.47 1.6E-05 50.2 11.1 50 158-212 47-96 (338)
343 1tue_A Replication protein E1; 93.0 0.092 3.2E-06 50.8 5.0 37 145-181 45-82 (212)
344 1lvg_A Guanylate kinase, GMP k 93.0 0.043 1.5E-06 53.7 2.8 25 157-181 4-28 (198)
345 2bbw_A Adenylate kinase 4, AK4 93.0 0.055 1.9E-06 55.0 3.7 25 157-181 27-51 (246)
346 2qt1_A Nicotinamide riboside k 92.9 0.057 1.9E-06 53.2 3.6 25 157-181 21-45 (207)
347 2cdn_A Adenylate kinase; phosp 92.9 0.059 2E-06 52.8 3.7 25 157-181 20-44 (201)
348 2pt5_A Shikimate kinase, SK; a 92.9 0.06 2.1E-06 50.9 3.6 23 159-181 2-24 (168)
349 1gvn_B Zeta; postsegregational 92.9 0.08 2.7E-06 55.1 4.8 26 156-181 32-57 (287)
350 1ex7_A Guanylate kinase; subst 92.9 0.05 1.7E-06 52.3 3.0 24 158-181 2-25 (186)
351 2grj_A Dephospho-COA kinase; T 92.9 0.06 2E-06 52.2 3.6 26 156-181 11-36 (192)
352 2pbr_A DTMP kinase, thymidylat 92.9 0.061 2.1E-06 52.2 3.7 23 159-181 2-24 (195)
353 1jjv_A Dephospho-COA kinase; P 92.8 0.051 1.8E-06 53.5 3.1 22 158-179 3-24 (206)
354 3nbx_X ATPase RAVA; AAA+ ATPas 92.8 0.057 2E-06 60.7 3.7 43 135-181 23-65 (500)
355 2vli_A Antibiotic resistance p 92.7 0.047 1.6E-06 52.5 2.7 25 157-181 5-29 (183)
356 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.064 2.2E-06 55.0 3.8 25 157-181 4-28 (260)
357 2wwf_A Thymidilate kinase, put 92.7 0.068 2.3E-06 52.8 3.8 32 157-190 10-41 (212)
358 1znw_A Guanylate kinase, GMP k 92.6 0.064 2.2E-06 52.9 3.4 25 157-181 20-44 (207)
359 3fb4_A Adenylate kinase; psych 92.6 0.069 2.4E-06 53.0 3.7 23 159-181 2-24 (216)
360 1nn5_A Similar to deoxythymidy 92.5 0.075 2.6E-06 52.6 3.9 32 157-190 9-40 (215)
361 1rj9_A FTSY, signal recognitio 92.5 0.11 3.7E-06 54.5 5.1 27 156-182 101-127 (304)
362 1htw_A HI0065; nucleotide-bind 92.5 0.076 2.6E-06 49.6 3.6 26 156-181 32-57 (158)
363 2p5t_B PEZT; postsegregational 92.4 0.086 2.9E-06 53.8 4.2 26 156-181 31-56 (253)
364 1gtv_A TMK, thymidylate kinase 92.4 0.047 1.6E-06 54.0 2.2 25 158-182 1-25 (214)
365 2z0h_A DTMP kinase, thymidylat 92.4 0.076 2.6E-06 51.7 3.7 23 159-181 2-24 (197)
366 4e22_A Cytidylate kinase; P-lo 92.4 0.069 2.4E-06 54.5 3.5 26 156-181 26-51 (252)
367 2ffh_A Protein (FFH); SRP54, s 92.4 0.36 1.2E-05 52.8 9.3 26 157-182 98-123 (425)
368 1z6g_A Guanylate kinase; struc 92.3 0.06 2E-06 53.6 2.8 25 157-181 23-47 (218)
369 3aez_A Pantothenate kinase; tr 92.3 0.076 2.6E-06 55.9 3.8 27 156-182 89-115 (312)
370 2jeo_A Uridine-cytidine kinase 92.3 0.072 2.5E-06 54.1 3.4 25 157-181 25-49 (245)
371 1uj2_A Uridine-cytidine kinase 92.2 0.079 2.7E-06 54.0 3.7 26 156-181 21-46 (252)
372 1aky_A Adenylate kinase; ATP:A 92.2 0.083 2.8E-06 52.6 3.8 25 157-181 4-28 (220)
373 1zd8_A GTP:AMP phosphotransfer 92.2 0.079 2.7E-06 53.0 3.7 25 157-181 7-31 (227)
374 2f1r_A Molybdopterin-guanine d 92.2 0.061 2.1E-06 51.0 2.5 25 158-182 3-27 (171)
375 3dl0_A Adenylate kinase; phosp 92.1 0.082 2.8E-06 52.4 3.6 23 159-181 2-24 (216)
376 1zak_A Adenylate kinase; ATP:A 92.0 0.08 2.7E-06 52.8 3.4 25 157-181 5-29 (222)
377 1s96_A Guanylate kinase, GMP k 92.0 0.084 2.9E-06 52.4 3.4 25 157-181 16-40 (219)
378 3tqc_A Pantothenate kinase; bi 91.9 0.12 4.3E-06 54.3 4.9 26 156-181 91-116 (321)
379 3tlx_A Adenylate kinase 2; str 91.9 0.098 3.3E-06 53.0 3.9 26 156-181 28-53 (243)
380 1m7g_A Adenylylsulfate kinase; 91.9 0.099 3.4E-06 51.7 3.9 26 156-181 24-49 (211)
381 3vr4_D V-type sodium ATPase su 91.9 0.32 1.1E-05 53.1 7.9 89 158-249 152-259 (465)
382 2pez_A Bifunctional 3'-phospho 91.8 0.1 3.5E-06 49.9 3.8 25 157-181 5-29 (179)
383 3d3q_A TRNA delta(2)-isopenten 91.8 0.092 3.1E-06 55.5 3.6 24 158-181 8-31 (340)
384 3r20_A Cytidylate kinase; stru 91.8 0.099 3.4E-06 52.2 3.7 25 157-181 9-33 (233)
385 3sr0_A Adenylate kinase; phosp 91.8 0.1 3.4E-06 51.2 3.7 23 159-181 2-24 (206)
386 1g41_A Heat shock protein HSLU 91.8 0.092 3.1E-06 57.7 3.7 46 134-181 15-74 (444)
387 2v54_A DTMP kinase, thymidylat 91.8 0.086 2.9E-06 51.7 3.2 25 157-181 4-28 (204)
388 3nwj_A ATSK2; P loop, shikimat 91.7 0.085 2.9E-06 53.5 3.1 24 158-181 49-72 (250)
389 2i3b_A HCR-ntpase, human cance 91.7 0.089 3E-06 50.9 3.1 25 158-182 2-26 (189)
390 3p32_A Probable GTPase RV1496/ 91.6 0.28 9.7E-06 52.7 7.5 36 146-181 66-103 (355)
391 1np6_A Molybdopterin-guanine d 91.6 0.11 3.8E-06 49.4 3.7 25 157-181 6-30 (174)
392 3ake_A Cytidylate kinase; CMP 91.6 0.1 3.6E-06 51.2 3.7 24 158-181 3-26 (208)
393 1e4v_A Adenylate kinase; trans 91.4 0.12 4E-06 51.3 3.8 23 159-181 2-24 (214)
394 3be4_A Adenylate kinase; malar 91.4 0.12 3.9E-06 51.4 3.8 24 158-181 6-29 (217)
395 2f6r_A COA synthase, bifunctio 91.4 0.12 4.1E-06 53.6 4.0 24 156-179 74-97 (281)
396 3gqb_B V-type ATP synthase bet 91.2 0.31 1E-05 53.2 7.0 93 157-249 147-262 (464)
397 3lnc_A Guanylate kinase, GMP k 91.2 0.073 2.5E-06 53.5 2.1 25 157-181 27-52 (231)
398 2xb4_A Adenylate kinase; ATP-b 91.2 0.12 4.1E-06 51.5 3.7 23 159-181 2-24 (223)
399 1vht_A Dephospho-COA kinase; s 91.2 0.11 3.8E-06 51.6 3.4 23 157-179 4-26 (218)
400 2b8t_A Thymidine kinase; deoxy 91.2 0.064 2.2E-06 53.2 1.5 112 157-277 12-127 (223)
401 3crm_A TRNA delta(2)-isopenten 91.2 0.12 4.1E-06 54.2 3.7 24 158-181 6-29 (323)
402 2onk_A Molybdate/tungstate ABC 91.1 0.12 4.1E-06 52.1 3.5 24 158-181 25-48 (240)
403 3exa_A TRNA delta(2)-isopenten 91.1 0.11 3.8E-06 53.9 3.3 25 157-181 3-27 (322)
404 1sq5_A Pantothenate kinase; P- 91.1 0.13 4.4E-06 54.2 3.9 26 156-181 79-104 (308)
405 3b9q_A Chloroplast SRP recepto 91.0 0.16 5.5E-06 53.1 4.6 26 157-182 100-125 (302)
406 2c61_A A-type ATP synthase non 91.0 0.38 1.3E-05 52.9 7.5 93 157-249 152-260 (469)
407 2yhs_A FTSY, cell division pro 90.9 0.52 1.8E-05 52.3 8.6 26 157-182 293-318 (503)
408 2qe7_A ATP synthase subunit al 90.9 0.39 1.3E-05 53.1 7.5 88 157-249 162-265 (502)
409 1ak2_A Adenylate kinase isoenz 90.8 0.14 4.7E-06 51.5 3.7 25 157-181 16-40 (233)
410 2pcj_A ABC transporter, lipopr 90.8 0.11 3.6E-06 51.9 2.8 24 158-181 31-54 (224)
411 3k1j_A LON protease, ATP-depen 90.8 0.14 4.9E-06 59.5 4.3 44 134-181 41-84 (604)
412 1cr0_A DNA primase/helicase; R 90.8 0.31 1.1E-05 50.9 6.6 39 157-197 35-73 (296)
413 3a8t_A Adenylate isopentenyltr 90.8 0.12 3.9E-06 54.5 3.1 25 157-181 40-64 (339)
414 2r9v_A ATP synthase subunit al 90.8 0.39 1.3E-05 53.1 7.3 88 157-249 175-278 (515)
415 3tif_A Uncharacterized ABC tra 90.7 0.11 3.7E-06 52.3 2.7 25 157-181 31-55 (235)
416 1a7j_A Phosphoribulokinase; tr 90.7 0.084 2.9E-06 55.0 1.9 26 156-181 4-29 (290)
417 1zu4_A FTSY; GTPase, signal re 90.6 0.2 6.9E-06 52.8 4.9 27 156-182 104-130 (320)
418 3foz_A TRNA delta(2)-isopenten 90.6 0.15 5.1E-06 52.8 3.7 25 157-181 10-34 (316)
419 3b85_A Phosphate starvation-in 90.5 0.1 3.6E-06 51.3 2.4 24 157-180 22-45 (208)
420 1q57_A DNA primase/helicase; d 90.4 0.93 3.2E-05 51.3 10.6 51 157-211 242-292 (503)
421 1oix_A RAS-related protein RAB 90.4 0.15 5.2E-06 49.3 3.5 25 157-181 29-53 (191)
422 1u0j_A DNA replication protein 90.4 0.31 1.1E-05 49.4 5.7 40 142-181 87-128 (267)
423 1tf7_A KAIC; homohexamer, hexa 90.4 0.36 1.2E-05 55.0 7.1 25 157-181 281-305 (525)
424 2cbz_A Multidrug resistance-as 90.2 0.13 4.3E-06 51.9 2.7 25 157-181 31-55 (237)
425 3end_A Light-independent proto 90.2 0.29 9.8E-06 51.5 5.7 41 155-198 39-79 (307)
426 4eaq_A DTMP kinase, thymidylat 90.2 0.27 9.2E-06 49.2 5.2 25 157-181 26-50 (229)
427 3mfy_A V-type ATP synthase alp 90.1 0.67 2.3E-05 51.6 8.5 48 157-209 227-275 (588)
428 2d2e_A SUFC protein; ABC-ATPas 90.0 0.15 5.3E-06 51.7 3.3 23 158-180 30-52 (250)
429 1b0u_A Histidine permease; ABC 90.0 0.13 4.5E-06 52.6 2.7 25 157-181 32-56 (262)
430 3io3_A DEHA2D07832P; chaperone 90.0 0.34 1.2E-05 51.7 6.0 47 152-199 13-59 (348)
431 3lv8_A DTMP kinase, thymidylat 90.0 0.43 1.5E-05 47.7 6.4 36 157-194 27-62 (236)
432 3gfo_A Cobalt import ATP-bindi 89.9 0.13 4.5E-06 52.9 2.7 25 157-181 34-58 (275)
433 2og2_A Putative signal recogni 89.9 0.2 6.9E-06 53.6 4.1 26 157-182 157-182 (359)
434 4tmk_A Protein (thymidylate ki 89.9 0.47 1.6E-05 46.6 6.6 25 158-182 4-28 (213)
435 1yrb_A ATP(GTP)binding protein 89.8 0.2 6.8E-06 51.3 4.0 26 156-181 13-38 (262)
436 1ji0_A ABC transporter; ATP bi 89.8 0.14 4.9E-06 51.6 2.7 24 158-181 33-56 (240)
437 2eyu_A Twitching motility prot 89.8 0.18 6.2E-06 51.5 3.5 26 156-181 24-49 (261)
438 2r8r_A Sensor protein; KDPD, P 89.8 0.31 1E-05 48.0 4.9 24 159-182 8-31 (228)
439 1sgw_A Putative ABC transporte 89.8 0.12 4.2E-06 51.0 2.1 24 158-181 36-59 (214)
440 2v9p_A Replication protein E1; 89.7 0.17 5.9E-06 52.7 3.4 26 156-181 125-150 (305)
441 2zu0_C Probable ATP-dependent 89.7 0.17 5.7E-06 52.0 3.2 24 157-180 46-69 (267)
442 2pze_A Cystic fibrosis transme 89.7 0.15 5E-06 51.1 2.7 24 158-181 35-58 (229)
443 2olj_A Amino acid ABC transpor 89.7 0.14 4.9E-06 52.3 2.7 25 157-181 50-74 (263)
444 2ck3_A ATP synthase subunit al 89.7 0.6 2E-05 51.7 7.7 93 157-249 162-273 (510)
445 4g1u_C Hemin import ATP-bindin 89.7 0.14 4.9E-06 52.4 2.7 25 157-181 37-61 (266)
446 1g6h_A High-affinity branched- 89.7 0.15 5E-06 52.2 2.7 25 157-181 33-57 (257)
447 1ltq_A Polynucleotide kinase; 89.6 0.18 6.2E-06 52.9 3.5 23 158-180 3-25 (301)
448 1mv5_A LMRA, multidrug resista 89.6 0.15 5.3E-06 51.5 2.9 25 157-181 28-52 (243)
449 3eph_A TRNA isopentenyltransfe 89.6 0.21 7.1E-06 53.9 3.9 24 158-181 3-26 (409)
450 1cp2_A CP2, nitrogenase iron p 89.6 0.4 1.4E-05 49.2 6.1 37 158-197 2-38 (269)
451 2ff7_A Alpha-hemolysin translo 89.6 0.15 5.1E-06 51.7 2.7 24 158-181 36-59 (247)
452 3cmu_A Protein RECA, recombina 89.6 0.56 1.9E-05 60.9 8.4 84 157-249 383-472 (2050)
453 2qmh_A HPR kinase/phosphorylas 89.5 0.16 5.4E-06 48.8 2.6 24 158-181 35-58 (205)
454 2dyk_A GTP-binding protein; GT 89.5 0.21 7.2E-06 46.4 3.5 23 158-180 2-24 (161)
455 2f9l_A RAB11B, member RAS onco 89.5 0.19 6.6E-06 48.9 3.4 24 157-180 5-28 (199)
456 1vpl_A ABC transporter, ATP-bi 89.4 0.16 5.4E-06 51.8 2.7 25 157-181 41-65 (256)
457 3zvl_A Bifunctional polynucleo 89.4 0.17 5.9E-06 55.8 3.3 26 156-181 257-282 (416)
458 1nlf_A Regulatory protein REPA 89.4 0.18 6.3E-06 52.2 3.3 25 157-181 30-54 (279)
459 2wji_A Ferrous iron transport 89.4 0.2 6.7E-06 47.1 3.3 23 158-180 4-26 (165)
460 3ld9_A DTMP kinase, thymidylat 89.3 0.43 1.5E-05 47.2 5.8 29 154-182 18-46 (223)
461 3cmw_A Protein RECA, recombina 89.3 0.52 1.8E-05 60.4 7.8 84 157-249 383-472 (1706)
462 3iqw_A Tail-anchored protein t 89.3 0.41 1.4E-05 50.8 6.0 44 153-199 12-55 (334)
463 2ghi_A Transport protein; mult 89.2 0.17 5.7E-06 51.8 2.7 25 157-181 46-70 (260)
464 1q3t_A Cytidylate kinase; nucl 89.2 0.24 8.3E-06 49.8 3.9 25 157-181 16-40 (236)
465 2ixe_A Antigen peptide transpo 89.2 0.17 5.7E-06 52.1 2.7 25 157-181 45-69 (271)
466 2qi9_C Vitamin B12 import ATP- 89.2 0.17 5.8E-06 51.3 2.7 24 158-181 27-50 (249)
467 3sop_A Neuronal-specific septi 89.1 0.22 7.4E-06 51.2 3.5 23 159-181 4-26 (270)
468 2nq2_C Hypothetical ABC transp 89.0 0.18 6E-06 51.3 2.7 24 158-181 32-55 (253)
469 2yz2_A Putative ABC transporte 89.0 0.18 6.1E-06 51.8 2.7 25 157-181 33-57 (266)
470 2ihy_A ABC transporter, ATP-bi 88.9 0.18 6.2E-06 52.1 2.7 25 157-181 47-71 (279)
471 2ce2_X GTPase HRAS; signaling 88.8 0.23 7.9E-06 46.2 3.3 23 159-181 5-27 (166)
472 2zej_A Dardarin, leucine-rich 88.8 0.2 6.7E-06 48.1 2.8 22 159-180 4-25 (184)
473 3cmw_A Protein RECA, recombina 88.7 0.6 2.1E-05 59.8 7.8 84 157-248 1431-1519(1706)
474 4edh_A DTMP kinase, thymidylat 88.7 0.65 2.2E-05 45.7 6.6 32 157-190 6-37 (213)
475 1svm_A Large T antigen; AAA+ f 88.7 0.22 7.6E-06 53.7 3.4 27 155-181 167-193 (377)
476 3cf2_A TER ATPase, transitiona 88.7 0.4 1.4E-05 56.9 5.8 92 134-249 477-581 (806)
477 2ocp_A DGK, deoxyguanosine kin 88.6 0.28 9.5E-06 49.5 3.9 25 157-181 2-26 (241)
478 3oaa_A ATP synthase subunit al 88.5 0.87 3E-05 50.1 7.9 87 157-249 162-265 (513)
479 2ged_A SR-beta, signal recogni 88.5 0.46 1.6E-05 45.7 5.3 26 156-181 47-72 (193)
480 3f9v_A Minichromosome maintena 88.4 0.16 5.4E-06 58.8 2.1 23 159-181 329-351 (595)
481 3vr4_A V-type sodium ATPase ca 88.3 0.77 2.6E-05 51.4 7.4 48 156-208 231-279 (600)
482 1z2a_A RAS-related protein RAB 88.3 0.25 8.6E-06 46.2 3.2 25 157-181 5-29 (168)
483 2wjg_A FEOB, ferrous iron tran 88.2 0.25 8.4E-06 47.4 3.1 24 157-180 7-30 (188)
484 3gmt_A Adenylate kinase; ssgci 88.2 0.28 9.4E-06 48.7 3.4 24 158-181 9-32 (230)
485 3fvq_A Fe(3+) IONS import ATP- 88.1 0.26 8.9E-06 52.6 3.4 25 157-181 30-54 (359)
486 2www_A Methylmalonic aciduria 88.0 0.46 1.6E-05 50.8 5.4 26 156-181 73-98 (349)
487 3con_A GTPase NRAS; structural 87.9 0.27 9.2E-06 47.3 3.2 24 158-181 22-45 (190)
488 3kjh_A CO dehydrogenase/acetyl 87.9 0.6 2.1E-05 47.1 6.0 41 160-203 3-43 (254)
489 2afh_E Nitrogenase iron protei 87.9 0.49 1.7E-05 49.2 5.4 38 157-197 2-39 (289)
490 3nh6_A ATP-binding cassette SU 87.9 0.2 6.7E-06 52.4 2.2 25 157-181 80-104 (306)
491 2pjz_A Hypothetical protein ST 87.9 0.23 7.8E-06 50.8 2.7 23 158-180 31-53 (263)
492 2v3c_C SRP54, signal recogniti 87.8 0.21 7.3E-06 55.0 2.6 26 157-182 99-124 (432)
493 2yv5_A YJEQ protein; hydrolase 87.8 0.41 1.4E-05 50.1 4.7 33 145-181 156-188 (302)
494 2gj8_A MNME, tRNA modification 87.8 0.26 9E-06 46.6 2.9 23 158-180 5-27 (172)
495 2vp4_A Deoxynucleoside kinase; 87.7 0.19 6.4E-06 50.4 1.9 24 157-180 20-43 (230)
496 1r8s_A ADP-ribosylation factor 87.6 0.31 1.1E-05 45.3 3.3 22 160-181 3-24 (164)
497 3geh_A MNME, tRNA modification 87.5 1.4 4.8E-05 48.9 9.1 23 159-181 226-248 (462)
498 1moz_A ARL1, ADP-ribosylation 87.5 0.38 1.3E-05 45.8 3.9 34 146-179 6-40 (183)
499 1u8z_A RAS-related protein RAL 87.5 0.3 1E-05 45.5 3.2 24 158-181 5-28 (168)
500 2bbs_A Cystic fibrosis transme 87.5 0.26 8.8E-06 51.2 2.8 25 157-181 64-88 (290)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-44 Score=421.23 Aligned_cols=310 Identities=18% Similarity=0.202 Sum_probs=240.5
Q ss_pred cccchHHHHHHHHHHhcCC---CeeEEEEEeCCCChHHHHHHHHHH--HHhhccCCCcEEEEEEECCcc--CHHHHHHHH
Q 036714 137 AGEKTKKVVEEIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINN--RLQKETNKFNVVIWVTVSQPL--YLIKLQTEI 209 (932)
Q Consensus 137 vGr~~~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i 209 (932)
||| ++++++|.++|..+ ..+||+|+||||+||||||+++|+ +. ....+|+.++||++++.+ +...++..|
T Consensus 131 ~GR--~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIR--EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCC--HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699 77899999998643 589999999999999999999998 33 456899999999999985 789999999
Q ss_pred HHHHhcccc-------ccchHHHHHHHHHHHHhcCC-eEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCcccccc
Q 036714 210 ATALKQSLL-------ENEDKVRRAGELLGMLKAKE-KFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGICRS 281 (932)
Q Consensus 210 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~ 281 (932)
+.+++.... +..+.......+ +..++++ |+||||||||+..++ .+. ..+||+||||||++.++..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMI-CNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHH-HHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHH-HHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH
Confidence 999986421 111122233344 4444665 999999999997754 221 1269999999999999988
Q ss_pred cc-cee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHhc
Q 036714 282 MG-CKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRG 359 (932)
Q Consensus 282 ~~-~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~ 359 (932)
++ ... |+|++|+.++||+||.+.++... .++...+++++|+++|+|+||||+++|+.|+.+ + |+.. +.+..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH
Confidence 76 334 99999999999999999987543 246788899999999999999999999999875 3 4433 33333
Q ss_pred ccccCCCCchhHHhHhHhhhccCCchhhHHHHH-----------HhhcCCCCcccChHHHHHHHHHh--CCcccchhhhh
Q 036714 360 RVRSLNGVDTEVFGRLEFSYHRLKHEKVQQCFL-----------YCALYPEDFAIPKDELIDYWIAE--GFIEEVKDVQA 426 (932)
Q Consensus 360 ~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~a~fp~~~~i~~~~Li~~w~a~--g~~~~~~~~~~ 426 (932)
..... ...++..++.+||++|| +++|.||+ |||+||+++.|+ ++.|+|+ ||+........
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~-~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLA-MALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHH-HHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred Hhhcc--cHHHHHHHHhccccccc-HHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 22211 13568899999999999 79999999 999999999999 8899999 99976432334
Q ss_pred HHhHHHHHHHHHHHcccccccCC--CCEEEeCchhHHHHHHhhccCC
Q 036714 427 KYDRGHTILNRLVNCCLLESAKD--GRCVKMHDLIRDMALSITSESP 471 (932)
Q Consensus 427 ~~~~~~~~l~~L~~~~ll~~~~~--~~~~~mHdlv~d~a~~~~~~~~ 471 (932)
.++.++ +|++|+++||++.... ..+|+|||+||++|++++.+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 555666 9999999999998643 3689999999999999987764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.3e-38 Score=366.79 Aligned_cols=284 Identities=15% Similarity=0.196 Sum_probs=223.5
Q ss_pred cccccchHHHHHHHHHHhcC-CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcE-EEEEEECCccCHHHHHHHHHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-VIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
..||| ++++++|.++|.+ +..++|+|+||||+||||||+++|++. ....+|+. ++|+++++.++...++..|++.
T Consensus 129 ~~VGR--e~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 129 YNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp SCCCC--HHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCc--HHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35999 7788999998865 458999999999999999999999875 33467886 9999999999988888888876
Q ss_pred Hhccc---cc-------cchHHHHHHHHHHHHh---cCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCcccc
Q 036714 213 LKQSL---LE-------NEDKVRRAGELLGMLK---AKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGIC 279 (932)
Q Consensus 213 l~~~~---~~-------~~~~~~~~~~l~~~l~---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~ 279 (932)
++... .. .....+.....++.++ .++|+||||||||+.+.|+.+. +||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHH
Confidence 54321 00 0111122222223322 5799999999999988887652 689999999999988
Q ss_pred cccccee-Eecc------CCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCC-chHHHH
Q 036714 280 RSMGCKE-VRVQ------PLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVD-EIHEWR 351 (932)
Q Consensus 280 ~~~~~~~-~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~-~~~~w~ 351 (932)
..+.... |.++ +|+.+|||+||.+.++... .++..+| |+|+||||+++|+.|+.+. +..+|+
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 6544433 6666 8999999999999865431 1233333 9999999999999999874 577886
Q ss_pred HHHHHHhcccccCCCCchhHHhHhHhhhccCCchhh-HHHHHHhhcCCCCcccChHHHHHHHHHhCCcccchhhhhHHhH
Q 036714 352 NALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKV-QQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDR 430 (932)
Q Consensus 352 ~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~ 430 (932)
.. ....+..++.+||+.|| ++. |+||+|||+||+++.|+++.++.+|+++| ++.
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp-~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSC-TTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred cC-------------ChhHHHHHHHHHHHhCC-HHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 42 13689999999999999 677 99999999999999999999999998877 135
Q ss_pred HHHHHHHHHHcccccccCCCCEEEeCchhHHHH
Q 036714 431 GHTILNRLVNCCLLESAKDGRCVKMHDLIRDMA 463 (932)
Q Consensus 431 ~~~~l~~L~~~~ll~~~~~~~~~~mHdlv~d~a 463 (932)
++.+|++|+++||++......+|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 778999999999999864457899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.6e-37 Score=397.36 Aligned_cols=313 Identities=23% Similarity=0.350 Sum_probs=247.1
Q ss_pred cCCcccccccchHHHHHHHHHHhc--CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccC-CCcEEEEEEECCccC--HHH
Q 036714 130 TLTMATLAGEKTKKVVEEIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN-KFNVVIWVTVSQPLY--LIK 204 (932)
Q Consensus 130 ~~~~~~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~--~~~ 204 (932)
|.+...|||| ++++++|.+.|. +++.++|+|+||||+||||||+++|++...... +++.++||++++..+ ...
T Consensus 120 p~~~~~~vgR--~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 120 PQRPVIFVTR--KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCCCSSCCCC--HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCceeccH--HHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 3344679999 789999999985 456899999999999999999999998643333 567888999988543 445
Q ss_pred HHHHHHHHHhccccc---cchHHHHHHHHHHHHhcCC--eEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCcccc
Q 036714 205 LQTEIATALKQSLLE---NEDKVRRAGELLGMLKAKE--KFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGIC 279 (932)
Q Consensus 205 ~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~ 279 (932)
.+..++..+...... ...........++..+.++ |+||||||||+..+|+.+ ++||+||||||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 566777777653211 1122233344445555655 999999999998877764 4689999999999998
Q ss_pred cc-cccee-EeccC-CCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCchHHHHHHHHH
Q 036714 280 RS-MGCKE-VRVQP-LSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNE 356 (932)
Q Consensus 280 ~~-~~~~~-~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~ 356 (932)
.. ++... +++.+ |+.+||++||...++.. .+...+++++|+++|+|+||||+++|++|+.++ ..|+.+++.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~ 344 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQ 344 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHH
Confidence 54 34444 89986 99999999999988543 234456799999999999999999999999865 469999999
Q ss_pred HhcccccC-----CCCchhHHhHhHhhhccCCchhhHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccchhhhhHHhHH
Q 036714 357 LRGRVRSL-----NGVDTEVFGRLEFSYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRG 431 (932)
Q Consensus 357 l~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~ 431 (932)
+....... ......+..++.+||+.|| ++.|.||+|||+||+++.|+++.++.+|.++ .+.+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~ 411 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEV 411 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC-TTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHH
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCC-HHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHH
Confidence 87665432 1122579999999999999 7899999999999999999999999999543 3567
Q ss_pred HHHHHHHHHcccccccCCC--CEEEeCchhHHHHHHhhccC
Q 036714 432 HTILNRLVNCCLLESAKDG--RCVKMHDLIRDMALSITSES 470 (932)
Q Consensus 432 ~~~l~~L~~~~ll~~~~~~--~~~~mHdlv~d~a~~~~~~~ 470 (932)
+.++++|+++||++...++ .+|+||++||++|+..+.++
T Consensus 412 ~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 8899999999999976544 47999999999999997765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=337.99 Aligned_cols=309 Identities=21% Similarity=0.313 Sum_probs=232.4
Q ss_pred CCcccccccchHHHHHHHHHHhcC--CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCC-cEEEEEEECCccCHHHHHH
Q 036714 131 LTMATLAGEKTKKVVEEIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF-NVVIWVTVSQPLYLIKLQT 207 (932)
Q Consensus 131 ~~~~~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~ 207 (932)
.+...|||| +.++++|.+++.. +..++|+|+||||+||||||++++++......+| +.++|++++.. +...++.
T Consensus 121 ~~~~~~vGR--~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 121 QRPVVFVTR--KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCSSCCCC--HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCeeccc--HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 344679999 7789999999873 4689999999999999999999998752213567 58999999875 3333333
Q ss_pred H---HHHHHhccc----cccchHHHHHHHHHHHHhc-CCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCcccc
Q 036714 208 E---IATALKQSL----LENEDKVRRAGELLGMLKA-KEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGIC 279 (932)
Q Consensus 208 ~---i~~~l~~~~----~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v~ 279 (932)
. ++..++... ....+.......+...+.. .+++||||||||+...++.+ ++|++||||||+..++
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHH
Confidence 3 344444211 1112222333333333322 27899999999997766543 4689999999999887
Q ss_pred ccccceeEec---cCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhhcCCCchHHHHHHHHH
Q 036714 280 RSMGCKEVRV---QPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCMRGVDEIHEWRNALNE 356 (932)
Q Consensus 280 ~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~ 356 (932)
..+....+++ ++|+.+|+++||.+.++.. .....+.+.+|+++|+|+|+||.++|+.++.+. ..|..+++.
T Consensus 271 ~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~ 344 (591)
T 1z6t_A 271 DSVMGPKYVVPVESSLGKEKGLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQ 344 (591)
T ss_dssp TTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHH
T ss_pred HhcCCCceEeecCCCCCHHHHHHHHHHHhCCC----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHH
Confidence 7654333444 5899999999999988753 222346789999999999999999999998754 469999988
Q ss_pred HhcccccC-----CCCchhHHhHhHhhhccCCchhhHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccchhhhhHHhHH
Q 036714 357 LRGRVRSL-----NGVDTEVFGRLEFSYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRG 431 (932)
Q Consensus 357 l~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~ 431 (932)
+....... ......+..++..||+.|| ++.|.||++||+||+++.|+.+.+...|.++ .+.+
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~-~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~ 411 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEV 411 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC-TTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHH
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCC-HHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHH
Confidence 87654321 1223589999999999999 7899999999999999999999999999432 2356
Q ss_pred HHHHHHHHHcccccccCCC--CEEEeCchhHHHHHHhhc
Q 036714 432 HTILNRLVNCCLLESAKDG--RCVKMHDLIRDMALSITS 468 (932)
Q Consensus 432 ~~~l~~L~~~~ll~~~~~~--~~~~mHdlv~d~a~~~~~ 468 (932)
..++++|+++||++...++ .+|+||++||++++....
T Consensus 412 ~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 7889999999999865433 579999999999998844
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.1e-23 Score=251.41 Aligned_cols=155 Identities=23% Similarity=0.264 Sum_probs=128.2
Q ss_pred EcccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc
Q 036714 476 KAGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV 555 (932)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 555 (932)
..+..++.+|.. .+.+++++++++|.++.+++..+.++++|++|++++| .+..++...|.++++|++|+|++|.+..
T Consensus 18 c~~~~l~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 18 CMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp CTTSCCSSCCTT--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred ccCCCcccCCCC--CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccc
Confidence 345567778764 4578999999999999998888889999999999999 7777776667999999999999999987
Q ss_pred c-CccccccccccccccccccccCCCC-ChhccccCcEeecccCCCc--ccccccccCCCCCEEeCCCCCCcccCCCccC
Q 036714 556 L-PSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIE--EVPEGMEMLENLSHLYLSSPRLKKFPTGILP 631 (932)
Q Consensus 556 l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~ 631 (932)
+ |..++.+++|++|++++|......| .++++++|++|++++|.+. .+|..++.+++|++|++++|.+..+++..++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 7 7889999999999999976544444 6999999999999999887 4788899999999999999887776554333
Q ss_pred CC
Q 036714 632 RL 633 (932)
Q Consensus 632 ~l 633 (932)
.+
T Consensus 175 ~l 176 (606)
T 3vq2_A 175 FL 176 (606)
T ss_dssp HH
T ss_pred hh
Confidence 33
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=249.15 Aligned_cols=156 Identities=24% Similarity=0.293 Sum_probs=125.5
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..+..+|.. .+..++++++++|.++.+++..+.++++|++|++++| .+..++...|.++++|++|++++|.++.+
T Consensus 15 ~~~~l~~ip~~--l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 15 MELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp CSSCCSSCCSS--SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCccccCCC--ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCcc
Confidence 34456677763 4567899999999999888878889999999999998 77778777778999999999999998876
Q ss_pred C-ccccccccccccccccccccCCCC--ChhccccCcEeecccCCCcc--cccccccCCCCCEEeCCCCCCcccCCCccC
Q 036714 557 P-SSVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEE--VPEGMEMLENLSHLYLSSPRLKKFPTGILP 631 (932)
Q Consensus 557 p-~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~ 631 (932)
| ..++.+++|++|++++|. ++.+| .++++++|++|++++|.+.. +|..++.+++|++|++++|.+..+++..++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred CHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 5 678889999999999865 55555 48899999999999998875 688888899999999998887766554444
Q ss_pred CCCCc
Q 036714 632 RLRNL 636 (932)
Q Consensus 632 ~l~~L 636 (932)
.+++|
T Consensus 171 ~l~~L 175 (570)
T 2z63_A 171 VLHQM 175 (570)
T ss_dssp HHHTC
T ss_pred chhcc
Confidence 44444
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=5.8e-24 Score=257.56 Aligned_cols=351 Identities=15% Similarity=0.155 Sum_probs=241.8
Q ss_pred cccccCCCcCCCCCCceEEEeecCCCccC------------------CChhh-hccCCceeEEEccCCCCc-ccCccccc
Q 036714 503 DIEEIPSYMSPHCDILSTLLLQANGNLWT------------------IPECF-FVYMHGLKVLNLSRTNIK-VLPSSVSD 562 (932)
Q Consensus 503 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------~~~~~-~~~l~~L~~L~L~~~~~~-~lp~~i~~ 562 (932)
.+..+|. .+.++++|++|++++| .+.. +|..+ |.++++|++|+|++|.+. .+|..+++
T Consensus 436 ~L~~IP~-~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 436 RITFISK-AIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp EEEEECG-GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred cccchhH-HHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 3444554 3567889999999998 5555 77775 348899999999998854 78888899
Q ss_pred cccccccccccccccC--CCC-Chhccc-------cCcEeecccCCCccccc--ccccCCCCCEEeCCCCCCcccCCCcc
Q 036714 563 LMNLRSLLLRWCENLE--RVP-SLAKLL-------ALQYLDLEETGIEEVPE--GMEMLENLSHLYLSSPRLKKFPTGIL 630 (932)
Q Consensus 563 l~~L~~L~L~~~~~l~--~lp-~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~~p~~~l 630 (932)
+++|++|+|++|..++ .+| .++++. +|++|++++|.+..+|. .++.+++|++|++++|.+..+| . +
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~-~ 591 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-A-F 591 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-C-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-h-h
Confidence 9999999999876444 477 577776 89999999998888888 8889999999999999888888 3 7
Q ss_pred CCCCCcceEEeecCCchhhhcHHHHHHHHhc-cceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceee----
Q 036714 631 PRLRNLYKLKLSFGNEALRETVEEAARLSDR-LDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLIT---- 705 (932)
Q Consensus 631 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~---- 705 (932)
+++++|+.|+++.+ .+. ..+..+..+ .+ |+.|+++.|.+..++..+.......|+.+.+..+..........
T Consensus 592 ~~L~~L~~L~Ls~N-~l~-~lp~~l~~l-~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 592 GTNVKLTDLKLDYN-QIE-EIPEDFCAF-TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CTTSEESEEECCSS-CCS-CCCTTSCEE-CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred cCCCcceEEECcCC-ccc-cchHHHhhc-cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 88999999999843 333 344456677 77 99999998887766544433333345555554433221100000
Q ss_pred --cccceeEEEEeecccccccCcc-cCCcccceeeEeccCCcccccc-c----------cCCccEEEEecCCCCcccccc
Q 036714 706 --DLEVHKSIFLIDCKICEREETI-VLPEDVQFLQMFEVSDVASLND-F----------SHDLKVLRFDSCKNLKNLFSL 771 (932)
Q Consensus 706 --~~~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l~~-~----------~~~L~~L~L~~c~~l~~l~~~ 771 (932)
....+..+.+..+.+......+ ..+++|+.|+++++.-. .++. . +++|+.|+|++|. ++.+|..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-CccchHH
Confidence 1235777888887777544322 35678899998887532 2221 1 1289999999884 5566542
Q ss_pred cccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCc------ccccccCCCCcccCCC
Q 036714 772 RLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLR------EFKSFCSNNGVLVCNS 845 (932)
Q Consensus 772 ~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~------~L~~i~~~~~~~~~p~ 845 (932)
-....+++|+.|+|++| .++.++.. +..+++|+.|+|++++ -...++. ....+++
T Consensus 747 l~~~~l~~L~~L~Ls~N-~L~~lp~~----------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~ 807 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYN-CFSSFPTQ----------------PLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPS 807 (876)
T ss_dssp GSTTTCTTCCEEECCSS-CCSSCCCG----------------GGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSS
T ss_pred hhhccCCCcCEEEeCCC-CCCccchh----------------hhcCCCCCEEECCCCCCcccccccccChH--HHhcCCC
Confidence 11137889999999885 45555322 5688999999998743 2334444 4556889
Q ss_pred ccEEEecccCCCccccCCCcccCCCCCCCCCCcceEecchhhhhhcc
Q 036714 846 LQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVIKMEKELWESLE 892 (932)
Q Consensus 846 L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l~~~~~~~~~l~ 892 (932)
|+.|++++|. +..+|..+ +++|+.|++..+-+..+.
T Consensus 808 L~~L~Ls~N~-L~~Ip~~l----------~~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 808 LIQLQIGSND-IRKVDEKL----------TPQLYILDIADNPNISID 843 (876)
T ss_dssp CCEEECCSSC-CCBCCSCC----------CSSSCEEECCSCTTCEEE
T ss_pred CCEEECCCCC-CCccCHhh----------cCCCCEEECCCCCCCccC
Confidence 9999999984 58888653 247888888766554443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.2e-23 Score=250.80 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=64.5
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-cccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSL 569 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L 569 (932)
..+++++++++|.+..+++..+.++++|++|++++| .+..+++..|+++++|++|++++|.+..+| ..++.+++|++|
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 345666666666666665555566666666666666 455553333466666666666666665544 445666666666
Q ss_pred ccccccccC-CCC-ChhccccCcEeecccCCCccc
Q 036714 570 LLRWCENLE-RVP-SLAKLLALQYLDLEETGIEEV 602 (932)
Q Consensus 570 ~L~~~~~l~-~lp-~~~~l~~L~~L~l~~~~i~~l 602 (932)
++++|.... .+| .++++++|++|++++|.+..+
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 666654332 345 466666666666666555443
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.4e-23 Score=248.22 Aligned_cols=351 Identities=12% Similarity=0.135 Sum_probs=248.0
Q ss_pred cccccCCCcCCCCCCceEEEeecCCCccC------------------CChhhhc--cCCceeEEEccCCCCc-ccCcccc
Q 036714 503 DIEEIPSYMSPHCDILSTLLLQANGNLWT------------------IPECFFV--YMHGLKVLNLSRTNIK-VLPSSVS 561 (932)
Q Consensus 503 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------~~~~~~~--~l~~L~~L~L~~~~~~-~lp~~i~ 561 (932)
.++.+|. .+.++++|++|++++| .+.. +|..+ . ++++|++|++++|.+. .+|..++
T Consensus 194 ~l~~ip~-~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 194 NITFVSK-AVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp EEEEECG-GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCccCCH-HHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHh
Confidence 3444544 3567899999999998 4655 78765 5 8999999999999865 7888899
Q ss_pred ccccccccccccccccC--CCC-Chhcc------ccCcEeecccCCCccccc--ccccCCCCCEEeCCCCCCc-ccCCCc
Q 036714 562 DLMNLRSLLLRWCENLE--RVP-SLAKL------LALQYLDLEETGIEEVPE--GMEMLENLSHLYLSSPRLK-KFPTGI 629 (932)
Q Consensus 562 ~l~~L~~L~L~~~~~l~--~lp-~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~-~~p~~~ 629 (932)
++++|++|++++|..++ .+| .++++ ++|++|++++|.++.+|. .++.+++|++|++++|.+. .+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~- 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A- 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-
Confidence 99999999999987444 477 67776 899999999999889998 8999999999999999988 888 4
Q ss_pred cCCCCCcceEEeecCCchhhhcHHHHHHHHhc-cceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCC-ceee--
Q 036714 630 LPRLRNLYKLKLSFGNEALRETVEEAARLSDR-LDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGG-FLIT-- 705 (932)
Q Consensus 630 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~-- 705 (932)
++.+++|++|+++.+ .+. ..+..+..+ .+ |+.|+++.|.+..++..+.......|+.+.+......... ..+.
T Consensus 349 ~~~l~~L~~L~L~~N-~l~-~lp~~l~~l-~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 349 FGSEIKLASLNLAYN-QIT-EIPANFCGF-TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CEEEEEESEEECCSS-EEE-ECCTTSEEE-CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hCCCCCCCEEECCCC-ccc-cccHhhhhh-cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 788999999999843 333 334556777 77 9999999888876665443333335555554433322110 1111
Q ss_pred -----cccceeEEEEeecccccccCc-ccCCcccceeeEeccCCccccc-ccc----------CCccEEEEecCCCCccc
Q 036714 706 -----DLEVHKSIFLIDCKICEREET-IVLPEDVQFLQMFEVSDVASLN-DFS----------HDLKVLRFDSCKNLKNL 768 (932)
Q Consensus 706 -----~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~-~~~----------~~L~~L~L~~c~~l~~l 768 (932)
....++.+.+..+.+...... +..+++|+.|+++++... .++ ..+ ++|+.|+|++|. ++.+
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l 503 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKL 503 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCcc
Confidence 234678888888877754442 334678999999887633 222 111 289999999985 4566
Q ss_pred ccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCC------cccccccCCCCccc
Q 036714 769 FSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGL------REFKSFCSNNGVLV 842 (932)
Q Consensus 769 ~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~------~~L~~i~~~~~~~~ 842 (932)
|..-....+++|+.|+++++ .++.++.. +..+++|+.|+|+++ .-...++. ....
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~----------------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~ 564 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYN-SFSKFPTQ----------------PLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITL 564 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSCCCG----------------GGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGG
T ss_pred ChhhhhccCCCcCEEECCCC-CCCCcChh----------------hhcCCCCCEEECCCCcccccCcccccChH--HHhc
Confidence 54211137889999999985 45555432 568999999999653 33444554 5556
Q ss_pred CCCccEEEecccCCCccccCCCcccCCCCCCCCCCcceEecchhhhhhccc
Q 036714 843 CNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVIKMEKELWESLEW 893 (932)
Q Consensus 843 ~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l~~~~~~~~~l~~ 893 (932)
+++|+.|++++|. ++.+|..+ +++|+.+++..+-+.++..
T Consensus 565 l~~L~~L~Ls~N~-l~~ip~~~----------~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 565 CPSLTQLQIGSND-IRKVNEKI----------TPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CSSCCEEECCSSC-CCBCCSCC----------CTTCCEEECCSCTTCEEEC
T ss_pred CCCCCEEECCCCc-CCccCHhH----------hCcCCEEECcCCCCccccH
Confidence 8899999999984 58888652 2588999888776655443
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=2.5e-22 Score=236.55 Aligned_cols=193 Identities=22% Similarity=0.245 Sum_probs=158.1
Q ss_pred ccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC
Q 036714 478 GLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP 557 (932)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 557 (932)
+..+..+|.. ....++++++++|.+..+++..+..+++|++|++++| .+..++...|.++++|++|++++|.+..+|
T Consensus 14 ~~~l~~ip~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 14 SRSFTSIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TSCCSSCCSC--CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCcccccccc--CCCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccC
Confidence 3456677764 3468999999999999988878899999999999999 777777766799999999999999999887
Q ss_pred cc-ccccccccccccccccccC-CCC-ChhccccCcEeecccCC-Ccccc-cccccCCCCCEEeCCCCCCcccCCCccCC
Q 036714 558 SS-VSDLMNLRSLLLRWCENLE-RVP-SLAKLLALQYLDLEETG-IEEVP-EGMEMLENLSHLYLSSPRLKKFPTGILPR 632 (932)
Q Consensus 558 ~~-i~~l~~L~~L~L~~~~~l~-~lp-~~~~l~~L~~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~~ 632 (932)
.. ++.+++|++|++++|.... ..| .++++++|++|++++|. +..+| ..+..+++|++|++++|.+....+..++.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 65 8999999999999976433 345 69999999999999996 77786 47899999999999999988755555799
Q ss_pred CCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhh
Q 036714 633 LRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDF 675 (932)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 675 (932)
+++|++|+++.+. ........+..+ ++|+.|+++.|.+...
T Consensus 171 l~~L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 171 IRDIHHLTLHLSE-SAFLLEIFADIL-SSVRYLELRDTNLARF 211 (549)
T ss_dssp CSEEEEEEEECSB-STTHHHHHHHST-TTBSEEEEESCBCTTC
T ss_pred cccCceEecccCc-ccccchhhHhhc-ccccEEEccCCccccc
Confidence 9999999998443 322222334457 8999999999887654
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2.5e-22 Score=239.59 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=131.2
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..++.+|.. .+..++++++++|.++.+++..+.++++|++|++++| .+..++...|.++++|++|++++|.+..+
T Consensus 20 ~~~~l~~iP~~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 20 ENLGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TTSCCSSCCTT--SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCCcccCcCC--CCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCccccc
Confidence 34456677754 4567999999999999998888889999999999999 66667666678999999999999998865
Q ss_pred -CccccccccccccccccccccCCC-C-ChhccccCcEeecccCCCcccc-cccccCCCCCEEeCCCCCCcccCCCccCC
Q 036714 557 -PSSVSDLMNLRSLLLRWCENLERV-P-SLAKLLALQYLDLEETGIEEVP-EGMEMLENLSHLYLSSPRLKKFPTGILPR 632 (932)
Q Consensus 557 -p~~i~~l~~L~~L~L~~~~~l~~l-p-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~~ 632 (932)
|..++.+++|++|++++|. ++.+ | .++++++|++|++++|.+..++ +.+..+++|++|++++|.+..+++..++.
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred ChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence 6788899999999999876 4444 4 6889999999999999888762 33445889999999999888876666788
Q ss_pred CCCcc--eEEeec
Q 036714 633 LRNLY--KLKLSF 643 (932)
Q Consensus 633 l~~L~--~L~l~~ 643 (932)
+++|+ +|+++.
T Consensus 176 l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 176 LQQATNLSLNLNG 188 (606)
T ss_dssp TTTCCSEEEECTT
T ss_pred hcccceeEEecCC
Confidence 88888 666663
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.4e-22 Score=241.79 Aligned_cols=179 Identities=20% Similarity=0.208 Sum_probs=92.2
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCcee--EEEccCCCCcccCccccccc-----
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLK--VLNLSRTNIKVLPSSVSDLM----- 564 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~L~~~~~~~lp~~i~~l~----- 564 (932)
.+++.+++++|.+..++...+..+++|++|++++| .+..++...|..+++|+ .|++++|.+..++.......
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccc
Confidence 45566666666665543333334666666666666 45555555456666666 56666666554443333222
Q ss_pred -----------------------------------------------cccccccccccccCCCC--ChhccccCcEeecc
Q 036714 565 -----------------------------------------------NLRSLLLRWCENLERVP--SLAKLLALQYLDLE 595 (932)
Q Consensus 565 -----------------------------------------------~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~ 595 (932)
+|++|++++|. +..++ .++++++|++|+++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCEEecc
Confidence 23333444332 22233 25555666666666
Q ss_pred cCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChh
Q 036714 596 ETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 596 ~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
+|.++.+|..+..+++|++|++++|.+..+++..+.++++|++|+++.+..........+..+ ++|+.|+++.|.+.
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL-ENLRELDLSHDDIE 363 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC-TTCCEEECCSSCCC
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc-CcCCEEECCCCccc
Confidence 666656665555666666666666655555443355566666666653321111222224444 55666666555443
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=6.1e-23 Score=244.73 Aligned_cols=320 Identities=14% Similarity=0.168 Sum_probs=228.9
Q ss_pred CCChhhhccCCceeEEEccCCCCcc------------------cCcccc--ccccccccccccccccCCCC-ChhccccC
Q 036714 531 TIPECFFVYMHGLKVLNLSRTNIKV------------------LPSSVS--DLMNLRSLLLRWCENLERVP-SLAKLLAL 589 (932)
Q Consensus 531 ~~~~~~~~~l~~L~~L~L~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~~l~~lp-~~~~l~~L 589 (932)
.+|.. ++++++|++|+|++|.++. +|..++ ++++|++|+|++|.....+| .++++++|
T Consensus 197 ~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 36665 5899999999999999998 999999 99999999999999888899 79999999
Q ss_pred cEeecccCC-Ccc--cccccccC------CCCCEEeCCCCCCcccCC--CccCCCCCcceEEeecCCchhhhcHHHHHHH
Q 036714 590 QYLDLEETG-IEE--VPEGMEML------ENLSHLYLSSPRLKKFPT--GILPRLRNLYKLKLSFGNEALRETVEEAARL 658 (932)
Q Consensus 590 ~~L~l~~~~-i~~--lp~~~~~l------~~L~~L~l~~~~l~~~p~--~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 658 (932)
++|++++|. ++. +|..++.+ ++|++|++++|.+..+|. . ++++++|++|+++.+ .+.+..+ .+..+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~-l~~l~~L~~L~L~~N-~l~g~ip-~~~~l 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYN-QLEGKLP-AFGSE 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH-HTTCTTCCEEECCSC-CCEEECC-CCEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh-hccCCCCCEEeCcCC-cCccchh-hhCCC
Confidence 999999997 884 89988876 999999999999999987 5 699999999999943 4442333 67778
Q ss_pred HhccceeEEEecChhhhhhhhcccCCCC-cceEEEEecccccCCceeec--ccceeEEEEeecccccccC-ccc------
Q 036714 659 SDRLDTFEGIFSTLNDFNLYVKSTDGRG-LKNYCLLLSAYWMGGFLITD--LEVHKSIFLIDCKICEREE-TIV------ 728 (932)
Q Consensus 659 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~~~~~~~~~~~~~~~~~~--~~~l~~l~l~~~~~~~~~~-~~~------ 728 (932)
++|+.|+++.|.+..++..+.. ... |+.+.+.......-...... ...+..+.+..+.+.+... .+.
T Consensus 353 -~~L~~L~L~~N~l~~lp~~l~~--l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 353 -IKLASLNLAYNQITEIPANFCG--FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp -EEESEEECCSSEEEECCTTSEE--ECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred -CCCCEEECCCCccccccHhhhh--hcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 9999999999887755544322 223 55555543332211111111 2257788888877765332 222
Q ss_pred -CCcccceeeEeccCCcccc---ccccCCccEEEEecCCCCcccccccccc-------cCCCccEEEEeecccccccccc
Q 036714 729 -LPEDVQFLQMFEVSDVASL---NDFSHDLKVLRFDSCKNLKNLFSLRLLP-------ALQNLEVLEVEDCYSIEEIVAV 797 (932)
Q Consensus 729 -~~~~L~~L~l~~~~~~~~l---~~~~~~L~~L~L~~c~~l~~l~~~~~l~-------~L~~L~~L~l~~c~~l~~~~~~ 797 (932)
..++|+.|+++++....-. ...+++|+.|+|++|. ++.+|.. .+. ++++|+.|++++| .++.++..
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 506 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKN-SLKDENENFKNTYLLTSIDLRFN-KLTKLSDD 506 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSS-SSEETTEECTTGGGCCEEECCSS-CCCBCCGG
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHH-HhccccccccccCCccEEECcCC-cCCccChh
Confidence 3457888888887633211 1224789999999875 4465432 222 2338999999885 45555432
Q ss_pred ccchhhhhhhcccccccc--ccCccceeeccCCcccccccCCCCcccCCCccEEEecc------cCCCccccCCCcccCC
Q 036714 798 EDEETEKELATNTIINIV--TLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHR------CPKLKRLSLSLPLLDN 869 (932)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~--~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~------C~~L~~lp~~l~~l~~ 869 (932)
+. .+++|+.|+|+++. ++.++. ....+++|+.|++++ +.-...+|..+..
T Consensus 507 ----------------~~~~~l~~L~~L~Ls~N~-l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~--- 564 (636)
T 4eco_A 507 ----------------FRATTLPYLVGIDLSYNS-FSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL--- 564 (636)
T ss_dssp ----------------GSTTTCTTCCEEECCSSC-CSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG---
T ss_pred ----------------hhhccCCCcCEEECCCCC-CCCcCh--hhhcCCCCCEEECCCCcccccCcccccChHHHhc---
Confidence 33 78999999999974 666665 555688999999964 3335566665543
Q ss_pred CCCCCCCCcceEecchhh
Q 036714 870 GQPSPPPTLEVIKMEKEL 887 (932)
Q Consensus 870 ~~~~~~~~L~~l~~~~~~ 887 (932)
+++|+.+++..+-
T Consensus 565 -----l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 565 -----CPSLTQLQIGSND 577 (636)
T ss_dssp -----CSSCCEEECCSSC
T ss_pred -----CCCCCEEECCCCc
Confidence 4577787666443
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=6.2e-22 Score=222.23 Aligned_cols=306 Identities=14% Similarity=0.168 Sum_probs=217.5
Q ss_pred CCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-cccccccccccccccccccCCCC-ChhccccCcE
Q 036714 514 HCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRWCENLERVP-SLAKLLALQY 591 (932)
Q Consensus 514 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~ 591 (932)
.++++++|++++| .+..+|..+|..+++|++|++++|.+..+|. .+..+++|++|++++|......| .++++++|++
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4577888888887 7788888877888888888888888887654 67888888888888866433334 4788888888
Q ss_pred eecccCCCccccccc-ccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEec
Q 036714 592 LDLEETGIEEVPEGM-EMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFS 670 (932)
Q Consensus 592 L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 670 (932)
|++++|.+..+|..+ ..+++|++|++++|.+..+++..++++++|++|+++.+ .+.... +..+ ++|+.|+++.|
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l-~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLI-PSLFHANVSYN 196 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGC-TTCSEEECCSS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccc-cccceeecccc
Confidence 888888888887764 77888888888888888877766788888888888843 333322 3455 77888887766
Q ss_pred ChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCC--ccccc
Q 036714 671 TLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSD--VASLN 748 (932)
Q Consensus 671 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~l~ 748 (932)
.+..++ ....++.+.+..+.+..... ..+++|+.|+++++.. ...+.
T Consensus 197 ~l~~~~-----------------------------~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~l~ 245 (390)
T 3o6n_A 197 LLSTLA-----------------------------IPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLL 245 (390)
T ss_dssp CCSEEE-----------------------------CCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCGGGG
T ss_pred cccccC-----------------------------CCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcccHHHc
Confidence 543211 11224455555555544322 3356888888888762 22222
Q ss_pred cccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCC
Q 036714 749 DFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGL 828 (932)
Q Consensus 749 ~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 828 (932)
. +++|++|++++|. ++.+++ ..+..+++|+.|+++++ .++.++.. ...+|+|++|+++++
T Consensus 246 ~-l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~----------------~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 246 N-YPGLVEVDLSYNE-LEKIMY-HPFVKMQRLERLYISNN-RLVALNLY----------------GQPIPTLKVLDLSHN 305 (390)
T ss_dssp G-CTTCSEEECCSSC-CCEEES-GGGTTCSSCCEEECCSS-CCCEEECS----------------SSCCTTCCEEECCSS
T ss_pred C-CCCccEEECCCCc-CCCcCh-hHccccccCCEEECCCC-cCcccCcc----------------cCCCCCCCEEECCCC
Confidence 3 3899999999985 454433 35678899999999985 56665432 347899999999998
Q ss_pred cccccccCCCCcccCCCccEEEecccCCCccccCCCcccCCCCCCCCCCcceEecchhhhhh
Q 036714 829 REFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVIKMEKELWES 890 (932)
Q Consensus 829 ~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l~~~~~~~~~ 890 (932)
.++.++. ....+++|+.|++++|+ ++.+| ...+++|+.+++..+.|.+
T Consensus 306 -~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~----------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 306 -HLLHVER--NQPQFDRLENLYLDHNS-IVTLK----------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp -CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC----------CCTTCCCSEEECCSSCEEH
T ss_pred -cceecCc--cccccCcCCEEECCCCc-cceeC----------chhhccCCEEEcCCCCccc
Confidence 5777765 45567899999999974 67665 2346789999887765544
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=2.2e-22 Score=243.85 Aligned_cols=349 Identities=11% Similarity=0.072 Sum_probs=252.5
Q ss_pred ccCCCccccccccceeecccccccc------------------cCCCc-CCCCCCceEEEeecCCCccCCChhhhccCCc
Q 036714 482 QEFPGKQEWKANLERVSLMMNDIEE------------------IPSYM-SPHCDILSTLLLQANGNLWTIPECFFVYMHG 542 (932)
Q Consensus 482 ~~~~~~~~~~~~~~~l~l~~~~~~~------------------~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 542 (932)
..+|.......+++.|++++|.+.. +|... |.++++|++|++++|.....+|..+ .++++
T Consensus 438 ~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~ 516 (876)
T 4ecn_A 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPE 516 (876)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSS
T ss_pred cchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCC
Confidence 3366665566789999999999998 76654 3489999999999996678888654 89999
Q ss_pred eeEEEccCCC-Ccc--cCccccccc-------cccccccccccccCCCCC---hhccccCcEeecccCCCcccccccccC
Q 036714 543 LKVLNLSRTN-IKV--LPSSVSDLM-------NLRSLLLRWCENLERVPS---LAKLLALQYLDLEETGIEEVPEGMEML 609 (932)
Q Consensus 543 L~~L~L~~~~-~~~--lp~~i~~l~-------~L~~L~L~~~~~l~~lp~---~~~l~~L~~L~l~~~~i~~lp~~~~~l 609 (932)
|++|+|++|. ++. +|..++.+. +|++|+|++|... .+|. ++++++|++|++++|.+..+| .++.+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L 594 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN 594 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence 9999999998 874 888887776 9999999997654 7876 999999999999999999999 89999
Q ss_pred CCCCEEeCCCCCCcccCCCccCCCCC-cceEEeecCCchhhhcHHHHHHHH-hccceeEEEecChhhhhhhh----cccC
Q 036714 610 ENLSHLYLSSPRLKKFPTGILPRLRN-LYKLKLSFGNEALRETVEEAARLS-DRLDTFEGIFSTLNDFNLYV----KSTD 683 (932)
Q Consensus 610 ~~L~~L~l~~~~l~~~p~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~-~~L~~L~l~~~~~~~~~~~~----~~~~ 683 (932)
++|+.|++++|.+..+|.. +.++++ |+.|+++.+. +. ..+..+..+. .+|+.|+++.|.+......+ ....
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~-L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHNK-LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp SEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSSC-CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CcceEEECcCCccccchHH-HhhccccCCEEECcCCC-CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 9999999999999999887 688998 9999999543 33 2223333330 34999999998875432111 1112
Q ss_pred CCCcceEEEEecccccCCc-eeecccceeEEEEeecccccccCcccC--------CcccceeeEeccCCc--ccccc--c
Q 036714 684 GRGLKNYCLLLSAYWMGGF-LITDLEVHKSIFLIDCKICEREETIVL--------PEDVQFLQMFEVSDV--ASLND--F 750 (932)
Q Consensus 684 ~~~L~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~--~~l~~--~ 750 (932)
...|+.+.+..+....-.. .....+.+..+.+..+.+......... +++|+.|++++|.-. +.... .
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 2245555444333221111 111346688899998887754432221 128999999998632 22111 3
Q ss_pred cCCccEEEEecCCCCcccccccccccCCCccEEEEeecc-----ccccccccccchhhhhhhccccccccccCccceeec
Q 036714 751 SHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCY-----SIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYL 825 (932)
Q Consensus 751 ~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L 825 (932)
+++|+.|+|++|. ++.+|. .+..+++|+.|+|+++. .+....+.. +..+++|+.|+|
T Consensus 752 l~~L~~L~Ls~N~-L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~---------------l~~L~~L~~L~L 813 (876)
T 4ecn_A 752 LPYLSNMDVSYNC-FSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQWPTG---------------ITTCPSLIQLQI 813 (876)
T ss_dssp CTTCCEEECCSSC-CSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCCCTT---------------GGGCSSCCEEEC
T ss_pred CCCcCEEEeCCCC-CCccch--hhhcCCCCCEEECCCCCCcccccccccChHH---------------HhcCCCCCEEEC
Confidence 4899999999985 455643 45689999999998743 222222211 678999999999
Q ss_pred cCCcccccccCCCCcccCCCccEEEecccCCCccc
Q 036714 826 WGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRL 860 (932)
Q Consensus 826 ~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~l 860 (932)
++|. +..++. .. +++|+.|++++|+ +..+
T Consensus 814 s~N~-L~~Ip~--~l--~~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 814 GSND-IRKVDE--KL--TPQLYILDIADNP-NISI 842 (876)
T ss_dssp CSSC-CCBCCS--CC--CSSSCEEECCSCT-TCEE
T ss_pred CCCC-CCccCH--hh--cCCCCEEECCCCC-CCcc
Confidence 9985 588877 32 3699999999997 4444
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=6.3e-22 Score=244.27 Aligned_cols=357 Identities=18% Similarity=0.137 Sum_probs=236.9
Q ss_pred EcccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc
Q 036714 476 KAGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV 555 (932)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 555 (932)
..+..++.+|. .+.++++|++++|.++.+++..+.++++|++|++++|.....++...|.++++|++|+|++|.+..
T Consensus 11 cs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 11 YRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp ESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred ccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 34556777876 567899999999999999888889999999999999977777866667999999999999999986
Q ss_pred c-CccccccccccccccccccccCCCC-C--hhccccCcEeecccCCCcccc--cccccCCCCCEEeCCCCCCcccCCCc
Q 036714 556 L-PSSVSDLMNLRSLLLRWCENLERVP-S--LAKLLALQYLDLEETGIEEVP--EGMEMLENLSHLYLSSPRLKKFPTGI 629 (932)
Q Consensus 556 l-p~~i~~l~~L~~L~L~~~~~l~~lp-~--~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~~~ 629 (932)
+ |..++.+++|++|+|++|......| . ++++++|++|++++|.+..++ ..++.+++|++|++++|.+..+....
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 6 8889999999999999987655455 3 999999999999999998763 56899999999999999988766655
Q ss_pred cCCC--CCcceEEeecCCchhhhcHHHHHHH-----HhccceeEEEecChhh-hhhhhc-ccCCCCcceEEEEeccccc-
Q 036714 630 LPRL--RNLYKLKLSFGNEALRETVEEAARL-----SDRLDTFEGIFSTLND-FNLYVK-STDGRGLKNYCLLLSAYWM- 699 (932)
Q Consensus 630 l~~l--~~L~~L~l~~~~~~~~~~~~~l~~l-----~~~L~~L~l~~~~~~~-~~~~~~-~~~~~~L~~~~~~~~~~~~- 699 (932)
+..+ ++|+.|+++.+ ......+..+..+ ...|+.|+++.|.+.. .+..+. ......+..+.+.......
T Consensus 168 l~~l~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GHHHHHCSSCCCEECCS-BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred cccccCCccceEECCCC-ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 6666 89999999843 3332222222222 0238999998875542 111111 1111223333222000000
Q ss_pred ------CC---ceee--cccceeEEEEeeccccccc-CcccCCcccceeeEeccCCccc---cccccCCccEEEEecCCC
Q 036714 700 ------GG---FLIT--DLEVHKSIFLIDCKICERE-ETIVLPEDVQFLQMFEVSDVAS---LNDFSHDLKVLRFDSCKN 764 (932)
Q Consensus 700 ------~~---~~~~--~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---l~~~~~~L~~L~L~~c~~ 764 (932)
.+ ..+. ....++.+.+..+.+.... ..+..+++|+.|+++++..... ....+++|++|+|++|.
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~- 325 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL- 325 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-
Confidence 00 0000 1134666777666655432 2345567778888877753211 11223678888888774
Q ss_pred CcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCC
Q 036714 765 LKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCN 844 (932)
Q Consensus 765 l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p 844 (932)
++.+++ ..+..+++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.++. +|
T Consensus 326 l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~---------------~~~l~~L~~L~Ls~N~-l~~i~~------~~ 381 (844)
T 3j0a_A 326 LGELYS-SNFYGLPKVAYIDLQKN-HIAIIQDQT---------------FKFLEKLQTLDLRDNA-LTTIHF------IP 381 (844)
T ss_dssp CSCCCS-CSCSSCTTCCEEECCSC-CCCCCCSSC---------------SCSCCCCCEEEEETCC-SCCCSS------CC
T ss_pred CCccCH-HHhcCCCCCCEEECCCC-CCCccChhh---------------hcCCCCCCEEECCCCC-CCcccC------CC
Confidence 344322 34567778888888775 455544322 4567788888887753 444332 56
Q ss_pred CccEEEecccCCCccccC
Q 036714 845 SLQEIEVHRCPKLKRLSL 862 (932)
Q Consensus 845 ~L~~L~i~~C~~L~~lp~ 862 (932)
+|+.|.+++| +++.+|.
T Consensus 382 ~L~~L~l~~N-~l~~l~~ 398 (844)
T 3j0a_A 382 SIPDIFLSGN-KLVTLPK 398 (844)
T ss_dssp SCSEEEEESC-CCCCCCC
T ss_pred CcchhccCCC-Ccccccc
Confidence 6777777665 3445543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=6.1e-22 Score=231.45 Aligned_cols=373 Identities=16% Similarity=0.134 Sum_probs=223.7
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..++.+|.. ...+++++++++|.+..+++..+..+++|++|++++| .+..++...|.++++|++|+|++|.++.+
T Consensus 8 s~n~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 84 (520)
T 2z7x_B 8 SKNGLIHVPKD--LSQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKI 84 (520)
T ss_dssp TTSCCSSCCCS--CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccccc--ccccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeec
Confidence 34456677754 3378999999999999988777789999999999999 77777666679999999999999999999
Q ss_pred CccccccccccccccccccccC-CCC-ChhccccCcEeecccCCCcccccccccCCCC--CEEeCCCCCC--ccc-CC--
Q 036714 557 PSSVSDLMNLRSLLLRWCENLE-RVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENL--SHLYLSSPRL--KKF-PT-- 627 (932)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~~l~-~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L--~~L~l~~~~l--~~~-p~-- 627 (932)
|.. .+++|++|+|++|.... .+| .++++++|++|++++|.+.. ..+..+++| +.|++++|.+ ... |.
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccc
Confidence 886 89999999999977544 466 79999999999999998876 356777788 9999988876 221 11
Q ss_pred -----------------------CccCCCCCcceEEeecCC-----------------------------chhhhcHHHH
Q 036714 628 -----------------------GILPRLRNLYKLKLSFGN-----------------------------EALRETVEEA 655 (932)
Q Consensus 628 -----------------------~~l~~l~~L~~L~l~~~~-----------------------------~~~~~~~~~l 655 (932)
..+.++++|+.|+++.+. ......+..+
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHH
Confidence 112345666666666332 1111111111
Q ss_pred H---HHHhccceeEEEecChh-hhhhhhcc---cCCCCcceEEEEecccccC------------------------Cce-
Q 036714 656 A---RLSDRLDTFEGIFSTLN-DFNLYVKS---TDGRGLKNYCLLLSAYWMG------------------------GFL- 703 (932)
Q Consensus 656 ~---~l~~~L~~L~l~~~~~~-~~~~~~~~---~~~~~L~~~~~~~~~~~~~------------------------~~~- 703 (932)
. .. .+|+.|+++.|.+. .++..+.. .....|+.+.+........ ...
T Consensus 241 ~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 241 LQLVWH-TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHHHHT-SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHHhhh-CcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc
Confidence 1 12 47888888887665 34433321 1122333333322211000 000
Q ss_pred eecccceeEEEEeeccccc-ccCcccCCcccceeeEeccCCcc--cc---ccccCCccEEEEecCCCCcccccccccccC
Q 036714 704 ITDLEVHKSIFLIDCKICE-REETIVLPEDVQFLQMFEVSDVA--SL---NDFSHDLKVLRFDSCKNLKNLFSLRLLPAL 777 (932)
Q Consensus 704 ~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~l---~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L 777 (932)
....+.+..+.++.+.+.+ ....+..+++|+.|++++|.... .+ ...+++|+.|++++|.....+|. ..+..+
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l 398 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWT 398 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCC
T ss_pred hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc-chhccC
Confidence 0122334444444444443 12223334455555555444211 11 11224555555555432221322 223344
Q ss_pred CCccEEEEeeccccccccccccchhhhhhhcccccccccc-CccceeeccCCcccccccCCCCcccCCCccEEEecccCC
Q 036714 778 QNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTL-PRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPK 856 (932)
Q Consensus 778 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~ 856 (932)
++|+.|++++|. ++... ...+ ++|+.|+++++ .++.++. ....+++|+.|++++| +
T Consensus 399 ~~L~~L~Ls~N~-l~~~~------------------~~~l~~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~L~~N-~ 455 (520)
T 2z7x_B 399 KSLLSLNMSSNI-LTDTI------------------FRCLPPRIKVLDLHSN-KIKSIPK--QVVKLEALQELNVASN-Q 455 (520)
T ss_dssp TTCCEEECCSSC-CCGGG------------------GGSCCTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSS-C
T ss_pred ccCCEEECcCCC-CCcch------------------hhhhcccCCEEECCCC-cccccch--hhhcCCCCCEEECCCC-c
Confidence 555555555542 21111 1123 57888888886 4666665 4446788888888887 6
Q ss_pred CccccCCCcccCCCCCCCCCCcceEecchhhh
Q 036714 857 LKRLSLSLPLLDNGQPSPPPTLEVIKMEKELW 888 (932)
Q Consensus 857 L~~lp~~l~~l~~~~~~~~~~L~~l~~~~~~~ 888 (932)
++.+|.. . ...+++|+.+++..+.|
T Consensus 456 l~~l~~~--~-----~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 456 LKSVPDG--I-----FDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCCCCTT--T-----TTTCTTCCEEECCSSCB
T ss_pred CCccCHH--H-----hccCCcccEEECcCCCC
Confidence 7777754 1 12356888887776544
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=5.5e-22 Score=227.76 Aligned_cols=357 Identities=17% Similarity=0.163 Sum_probs=247.2
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..++.+|. .+.+++++++++|.++.+++..+.++++|++|++++|.....++...|.++++|++|+|++|.+..+
T Consensus 18 ~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 18 INRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred CCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 3445667775 4578999999999999988878889999999999999544577777779999999999999999865
Q ss_pred -CccccccccccccccccccccCCCC-C--hhccccCcEeecccCCCccc-ccc-cccCCCCCEEeCCCCCCcccCCCcc
Q 036714 557 -PSSVSDLMNLRSLLLRWCENLERVP-S--LAKLLALQYLDLEETGIEEV-PEG-MEMLENLSHLYLSSPRLKKFPTGIL 630 (932)
Q Consensus 557 -p~~i~~l~~L~~L~L~~~~~l~~lp-~--~~~l~~L~~L~l~~~~i~~l-p~~-~~~l~~L~~L~l~~~~l~~~p~~~l 630 (932)
|..++.+++|++|++++|......| . +.++++|++|++++|.+..+ |.. +..+++|++|++++|.+..+++..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 7789999999999999986544344 3 89999999999999999987 544 7899999999999999887766656
Q ss_pred CCC--CCcceEEeecCCchhhhcH--------HHHHHHHhccceeEEEecChhhh-hhhhcc-cCCCCcceEEEEecccc
Q 036714 631 PRL--RNLYKLKLSFGNEALRETV--------EEAARLSDRLDTFEGIFSTLNDF-NLYVKS-TDGRGLKNYCLLLSAYW 698 (932)
Q Consensus 631 ~~l--~~L~~L~l~~~~~~~~~~~--------~~l~~l~~~L~~L~l~~~~~~~~-~~~~~~-~~~~~L~~~~~~~~~~~ 698 (932)
..+ .+|+.|+++.+ ....... ..+..+ .+|+.|+++.|.+... +..+.. .....++.+
T Consensus 175 ~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L-------- 244 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL-------- 244 (455)
T ss_dssp GGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE--------
T ss_pred hccccccccccccccC-cccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhccccccceeeE--------
Confidence 665 67888888743 2222111 112234 6788899888866532 211111 111222222
Q ss_pred cCCceeecccceeEEEEeeccccccc-------------CcccCCcccceeeEeccCCccc---cccccCCccEEEEecC
Q 036714 699 MGGFLITDLEVHKSIFLIDCKICERE-------------ETIVLPEDVQFLQMFEVSDVAS---LNDFSHDLKVLRFDSC 762 (932)
Q Consensus 699 ~~~~~~~~~~~l~~l~l~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~---l~~~~~~L~~L~L~~c 762 (932)
.+..+...+.. -....+++|+.|+++++..... ....+++|+.|+|++|
T Consensus 245 ---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 245 ---------------ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp ---------------ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ---------------eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 22222111000 0011235788888888763322 1223389999999998
Q ss_pred CCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCccc
Q 036714 763 KNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLV 842 (932)
Q Consensus 763 ~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~ 842 (932)
. ++.+++ ..+..+++|+.|++++| .++.+.+.. +..+++|++|+|+++. ++.+.. .....
T Consensus 310 ~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~---------------~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~ 369 (455)
T 3v47_A 310 E-INKIDD-NAFWGLTHLLKLNLSQN-FLGSIDSRM---------------FENLDKLEVLDLSYNH-IRALGD-QSFLG 369 (455)
T ss_dssp C-CCEECT-TTTTTCTTCCEEECCSS-CCCEECGGG---------------GTTCTTCCEEECCSSC-CCEECT-TTTTT
T ss_pred c-ccccCh-hHhcCcccCCEEECCCC-ccCCcChhH---------------hcCcccCCEEECCCCc-ccccCh-hhccc
Confidence 5 444433 35677889999999986 455554322 5678999999999984 555532 14455
Q ss_pred CCCccEEEecccCCCccccCCCcccCCCCCCCCCCcceEecchhhhh
Q 036714 843 CNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVIKMEKELWE 889 (932)
Q Consensus 843 ~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l~~~~~~~~ 889 (932)
+++|++|++++| +++.+|... ...+++|+.+++..+.|.
T Consensus 370 l~~L~~L~L~~N-~l~~~~~~~-------~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 370 LPNLKELALDTN-QLKSVPDGI-------FDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CTTCCEEECCSS-CCSCCCTTT-------TTTCTTCCEEECCSSCBC
T ss_pred cccccEEECCCC-ccccCCHhH-------hccCCcccEEEccCCCcc
Confidence 789999999986 678877532 123567888877765443
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=225.00 Aligned_cols=309 Identities=17% Similarity=0.168 Sum_probs=175.1
Q ss_pred eeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-Cccccccccccccccccc
Q 036714 496 RVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLRWC 574 (932)
Q Consensus 496 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~ 574 (932)
.+..+++.+..+|.... +++++|++++| .+..++...|.++++|++|+|++|.+..+ |..+..+++|++|+|++|
T Consensus 15 ~v~c~~~~l~~ip~~~~---~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP---TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCSSCCSCCC---TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCcCCCCCC---CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45555566666665432 46777777777 66666655567777777777777777755 566777777777777775
Q ss_pred cccCCCC--ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhc
Q 036714 575 ENLERVP--SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRET 651 (932)
Q Consensus 575 ~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 651 (932)
. ++.+| .|.++++|++|++++|.+..+ |..+..+++|++|++++|.+..++...+.++++|++|+++. +.+....
T Consensus 91 ~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~ 168 (477)
T 2id5_A 91 R-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIP 168 (477)
T ss_dssp C-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCC
T ss_pred c-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccC
Confidence 4 45555 367777777787777777755 44567777788888777777776665577777788877773 3444555
Q ss_pred HHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeeccccccc-CcccCC
Q 036714 652 VEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICERE-ETIVLP 730 (932)
Q Consensus 652 ~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~ 730 (932)
...+..+ ++|+.|++..|.+..++.. .+.....++.+.+..+...+.. ......
T Consensus 169 ~~~l~~l-~~L~~L~l~~n~i~~~~~~------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 169 TEALSHL-HGLIVLRLRHLNINAIRDY------------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp HHHHTTC-TTCCEEEEESCCCCEECTT------------------------CSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred hhHhccc-CCCcEEeCCCCcCcEeChh------------------------hcccCcccceeeCCCCccccccCcccccC
Confidence 5566677 7777777776654332110 0111122333333333221111 111122
Q ss_pred cccceeeEeccCCcccc---ccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhh
Q 036714 731 EDVQFLQMFEVSDVASL---NDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELA 807 (932)
Q Consensus 731 ~~L~~L~l~~~~~~~~l---~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 807 (932)
.+|+.|+++++.--... ...+++|+.|+|++|. ++.+++ ..+..+++|+.|+++++ .++.+.+..
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~--------- 291 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGG-QLAVVEPYA--------- 291 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSS-CCSEECTTT---------
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh-hhccccccCCEEECCCC-ccceECHHH---------
Confidence 35666666655421111 1122566666666653 333322 23455566666666653 344433221
Q ss_pred ccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccC
Q 036714 808 TNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCP 855 (932)
Q Consensus 808 ~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~ 855 (932)
+..+++|+.|+|+++ .++.++.. ....+++|+.|+++++|
T Consensus 292 ------~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 292 ------FRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp ------BTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred ------hcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCCC
Confidence 445666666666665 34444331 11234566666665543
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.1e-21 Score=216.41 Aligned_cols=168 Identities=19% Similarity=0.276 Sum_probs=106.9
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLL 571 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L 571 (932)
+.++++++.++.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+..+| .+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccchh--hhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 456777777777666643 456677777777777 5666655 567777777777777776665 4667777777777
Q ss_pred ccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhc
Q 036714 572 RWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRET 651 (932)
Q Consensus 572 ~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 651 (932)
++|. +..+|.+..+++|++|++++|.....+..+..+++|++|++++|.+..++. +..+++|++|+++.+. .....
T Consensus 118 ~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~ 193 (347)
T 4fmz_A 118 NEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ-IEDIS 193 (347)
T ss_dssp TTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC-CCCCG
T ss_pred cCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc-ccccc
Confidence 7654 455555677777777777777333333346777777777777777666554 5677777777776432 22211
Q ss_pred HHHHHHHHhccceeEEEecCh
Q 036714 652 VEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 652 ~~~l~~l~~~L~~L~l~~~~~ 672 (932)
.+..+ ++|+.|+++.|.+
T Consensus 194 --~~~~l-~~L~~L~l~~n~l 211 (347)
T 4fmz_A 194 --PLASL-TSLHYFTAYVNQI 211 (347)
T ss_dssp --GGGGC-TTCCEEECCSSCC
T ss_pred --cccCC-CccceeecccCCC
Confidence 14455 6666666665544
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3e-21 Score=221.88 Aligned_cols=295 Identities=18% Similarity=0.254 Sum_probs=151.3
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
..+++++++++|.+..+++ +..+++|++|++++| .+..++. +.++++|++|++++|.+..+|. +..+++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEE
Confidence 3456666666666655544 455666666666665 4444444 4566666666666666655554 55666666666
Q ss_pred cccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 571 LRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 571 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
+++|. +..+|.+.++++|++|+++ +.+..++. +..+++|++|++++|.+..++. +..+++|++|+++.+. ....
T Consensus 141 l~~n~-l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~ 214 (466)
T 1o6v_A 141 LSSNT-ISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQ-ISDI 214 (466)
T ss_dssp EEEEE-ECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSC-CCCC
T ss_pred CCCCc-cCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCc-cccc
Confidence 66543 4444555556666666654 33333332 5566666666666666555543 4566666666666322 2211
Q ss_pred cHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCC
Q 036714 651 TVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLP 730 (932)
Q Consensus 651 ~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 730 (932)
.+ ++.+ ++|+.|+++.|.+..++. ....+.++.+.+.++.+.+... +..+
T Consensus 215 ~~--~~~l-~~L~~L~l~~n~l~~~~~--------------------------l~~l~~L~~L~l~~n~l~~~~~-~~~l 264 (466)
T 1o6v_A 215 TP--LGIL-TNLDELSLNGNQLKDIGT--------------------------LASLTNLTDLDLANNQISNLAP-LSGL 264 (466)
T ss_dssp GG--GGGC-TTCCEEECCSSCCCCCGG--------------------------GGGCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred cc--cccc-CCCCEEECCCCCcccchh--------------------------hhcCCCCCEEECCCCccccchh-hhcC
Confidence 11 3444 566666666555443211 1122334555555555443332 3444
Q ss_pred cccceeeEeccCC--ccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhc
Q 036714 731 EDVQFLQMFEVSD--VASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELAT 808 (932)
Q Consensus 731 ~~L~~L~l~~~~~--~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 808 (932)
++|+.|++++|.. ...+.. +++|+.|++++|. ++.+++ +..+++|+.|++++| .++.+.+
T Consensus 265 ~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~------------ 326 (466)
T 1o6v_A 265 TKLTELKLGANQISNISPLAG-LTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFN-NISDISP------------ 326 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGTT-CTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSS-CCSCCGG------------
T ss_pred CCCCEEECCCCccCccccccC-CCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCC-cCCCchh------------
Confidence 5566666655541 111122 2566666666653 333333 345556666666654 2333322
Q ss_pred cccccccccCccceeeccCCcccccccCCCCcccCCCccEEEeccc
Q 036714 809 NTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRC 854 (932)
Q Consensus 809 ~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C 854 (932)
+..+++|+.|++++| .+..++ ....+++|+.|++++|
T Consensus 327 -----~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 327 -----VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHN 363 (466)
T ss_dssp -----GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSS
T ss_pred -----hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCC
Confidence 235566666666655 334332 2233556666666655
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=8.3e-22 Score=236.55 Aligned_cols=149 Identities=24% Similarity=0.291 Sum_probs=130.2
Q ss_pred ccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC
Q 036714 478 GLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP 557 (932)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 557 (932)
+.+++.+|.. .+.++++|++++|.++.+++..|.++++|++|++++| .+..+++..|.++++|++|+|++|.++.+|
T Consensus 40 ~~~l~~vP~~--lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 40 ELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TSCCSSCCSS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcCccCCC--CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 4467788864 5678999999999999999988999999999999999 888999888899999999999999999988
Q ss_pred c-cccccccccccccccccccCCCC--ChhccccCcEeecccCCCcc--cccccccCCCCCEEeCCCCCCcccCCCcc
Q 036714 558 S-SVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEE--VPEGMEMLENLSHLYLSSPRLKKFPTGIL 630 (932)
Q Consensus 558 ~-~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~~p~~~l 630 (932)
. .+..+++|++|+|++|. ++.+| .|+++++|++|++++|.+.. +|..++.+++|++|++++|.++.++.+.+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred HHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 6 47899999999999975 56666 59999999999999998875 57788999999999999998877655433
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.2e-21 Score=223.33 Aligned_cols=163 Identities=17% Similarity=0.200 Sum_probs=113.0
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLL 571 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L 571 (932)
..++++++++|.++.+| .+..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccCh--hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 45777888877777765 3557778888888877 566665 467778888888888777765 677788888888
Q ss_pred ccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCC-CcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 572 RWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPR-LKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 572 ~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
++|. ++.+| ++.+++|++|++++|.++.+| ++.+++|++|++++|. +..++ ++.+++|++|+++.+ .+...
T Consensus 114 ~~N~-l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n-~l~~l 185 (457)
T 3bz5_A 114 DTNK-LTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN-KITEL 185 (457)
T ss_dssp CSSC-CSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS-CCCCC
T ss_pred CCCc-CCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC-cccee
Confidence 7754 44555 777778888888888777764 6677788888887774 44442 467777888877733 33332
Q ss_pred cHHHHHHHHhccceeEEEecChhh
Q 036714 651 TVEEAARLSDRLDTFEGIFSTLND 674 (932)
Q Consensus 651 ~~~~l~~l~~~L~~L~l~~~~~~~ 674 (932)
. +..+ ++|+.|+++.|.+..
T Consensus 186 ~---l~~l-~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 186 D---VSQN-KLLNRLNCDTNNITK 205 (457)
T ss_dssp C---CTTC-TTCCEEECCSSCCSC
T ss_pred c---cccC-CCCCEEECcCCcCCe
Confidence 2 4555 677777777665543
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.9e-21 Score=230.50 Aligned_cols=305 Identities=14% Similarity=0.169 Sum_probs=215.2
Q ss_pred CCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-cccccccccccccccccccCCCC-ChhccccCcE
Q 036714 514 HCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRWCENLERVP-SLAKLLALQY 591 (932)
Q Consensus 514 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~ 591 (932)
.+++++.|++++| .+..+|..+|..+++|++|+|++|.+..+|. .++.+++|++|+|++|......| .|+++++|++
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3567888888887 7777888877888888888888888886654 67888888888888866433333 4788888888
Q ss_pred eecccCCCccccccc-ccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEec
Q 036714 592 LDLEETGIEEVPEGM-EMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFS 670 (932)
Q Consensus 592 L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 670 (932)
|++++|.+..+|..+ +.+++|++|++++|.+..+++..++++++|++|+++.+ .+.... +..+ ++|+.|+++.|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l-~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLI-PSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGC-TTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhh-hhhhhhhcccC
Confidence 888888888887764 78888888888888888777766788888888888743 333332 3445 77788877766
Q ss_pred ChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCC--ccccc
Q 036714 671 TLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSD--VASLN 748 (932)
Q Consensus 671 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~l~ 748 (932)
.+..++ ....+..+.+..+.+..... ..+++|+.|++++|.. ...+.
T Consensus 203 ~l~~l~-----------------------------~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~l~ 251 (597)
T 3oja_B 203 LLSTLA-----------------------------IPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLL 251 (597)
T ss_dssp CCSEEE-----------------------------CCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCCCGGGG
T ss_pred cccccc-----------------------------CCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCCChhhc
Confidence 543211 11224455555555443332 2346788888888762 22233
Q ss_pred cccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCC
Q 036714 749 DFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGL 828 (932)
Q Consensus 749 ~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 828 (932)
. +++|+.|+|++|. ++.+++ ..+..+++|+.|++++| .++.++.. ...+|+|+.|+|++|
T Consensus 252 ~-l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~----------------~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 252 N-YPGLVEVDLSYNE-LEKIMY-HPFVKMQRLERLYISNN-RLVALNLY----------------GQPIPTLKVLDLSHN 311 (597)
T ss_dssp G-CTTCSEEECCSSC-CCEEES-GGGTTCSSCCEEECTTS-CCCEEECS----------------SSCCTTCCEEECCSS
T ss_pred c-CCCCCEEECCCCc-cCCCCH-HHhcCccCCCEEECCCC-CCCCCCcc----------------cccCCCCcEEECCCC
Confidence 3 3899999999985 444433 35678899999999985 56665432 446899999999998
Q ss_pred cccccccCCCCcccCCCccEEEecccCCCccccCCCcccCCCCCCCCCCcceEecchhhhh
Q 036714 829 REFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVIKMEKELWE 889 (932)
Q Consensus 829 ~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l~~~~~~~~ 889 (932)
. +..++. ....+++|+.|++++|+ ++.+| +..+++|+.|++..+-|.
T Consensus 312 ~-l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~----------~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 312 H-LLHVER--NQPQFDRLENLYLDHNS-IVTLK----------LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp C-CCCCGG--GHHHHTTCSEEECCSSC-CCCCC----------CCTTCCCSEEECCSSCEE
T ss_pred C-CCccCc--ccccCCCCCEEECCCCC-CCCcC----------hhhcCCCCEEEeeCCCCC
Confidence 4 667765 45568899999999974 66665 244678999887766554
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=7.3e-21 Score=224.28 Aligned_cols=140 Identities=19% Similarity=0.257 Sum_probs=112.1
Q ss_pred EcccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc
Q 036714 476 KAGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV 555 (932)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 555 (932)
..+..++.+|.. ...+++++++++|.+..+++..+.++++|++|++++| .+..++...|.++++|++|++++|.++.
T Consensus 38 ls~~~L~~ip~~--~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 114 (562)
T 3a79_B 38 YSNRNLTHVPKD--LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQN 114 (562)
T ss_dssp CTTSCCCSCCTT--SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cCCCCCccCCCC--CCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCc
Confidence 344566677754 3478899999999999888777889999999999998 7777766667889999999999999999
Q ss_pred cCccccccccccccccccccccC-CCC-ChhccccCcEeecccCCCcccccccccCCCC--CEEeCCCCCC
Q 036714 556 LPSSVSDLMNLRSLLLRWCENLE-RVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENL--SHLYLSSPRL 622 (932)
Q Consensus 556 lp~~i~~l~~L~~L~L~~~~~l~-~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L--~~L~l~~~~l 622 (932)
+|.. .+++|++|++++|.... ..| .++++++|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 115 lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 115 ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 8876 89999999999876433 234 689999999999999988753 45556666 8999888876
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=224.44 Aligned_cols=305 Identities=17% Similarity=0.146 Sum_probs=236.7
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..+..+|.. ....++.|++++|.+..+++..+.++++|++|++++| .+..++...|.++++|++|+|++|.++.+
T Consensus 19 ~~~~l~~ip~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 19 HRKRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp CSCCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCCcCcCCCC--CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 34556777764 4678999999999999998888899999999999999 77777666679999999999999999988
Q ss_pred Ccc-ccccccccccccccccccCCCC-ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcccCCCccCCC
Q 036714 557 PSS-VSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKKFPTGILPRL 633 (932)
Q Consensus 557 p~~-i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l 633 (932)
|.. +..+++|++|+|++|......| .+.++++|++|++++|.+..+ |..+..+++|++|++++|.+..++...+.++
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 865 6889999999999987655556 699999999999999999876 4578899999999999999999988778999
Q ss_pred CCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhh-hhhhhcccCCCCcceEEEEecccccCCceeecccceeE
Q 036714 634 RNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLND-FNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKS 712 (932)
Q Consensus 634 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 712 (932)
++|+.|+++. +.........+..+ .+|+.|+++.|.... ++.. ......+..
T Consensus 176 ~~L~~L~l~~-n~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~-------------------------~~~~~~L~~ 228 (477)
T 2id5_A 176 HGLIVLRLRH-LNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPN-------------------------CLYGLNLTS 228 (477)
T ss_dssp TTCCEEEEES-CCCCEECTTCSCSC-TTCCEEEEECCTTCCEECTT-------------------------TTTTCCCSE
T ss_pred CCCcEEeCCC-CcCcEeChhhcccC-cccceeeCCCCccccccCcc-------------------------cccCccccE
Confidence 9999999994 34444444556677 899999998764321 1100 001124667
Q ss_pred EEEeecccccccC-cccCCcccceeeEeccCCccc---cccccCCccEEEEecCCCCcccccccccccCCCccEEEEeec
Q 036714 713 IFLIDCKICEREE-TIVLPEDVQFLQMFEVSDVAS---LNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDC 788 (932)
Q Consensus 713 l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~---l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 788 (932)
+.+..+.+..... .+..+++|+.|+++++..... ....+++|+.|+|++|. ++.+.+ ..+..+++|+.|+++++
T Consensus 229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP-YAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECT-TTBTTCTTCCEEECCSS
T ss_pred EECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECH-HHhcCcccCCEEECCCC
Confidence 7787777765442 455678999999998863211 11233899999999985 555433 45778999999999985
Q ss_pred cccccccccccchhhhhhhccccccccccCccceeeccCCc
Q 036714 789 YSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLR 829 (932)
Q Consensus 789 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 829 (932)
.++.++... +..+++|++|+|++++
T Consensus 307 -~l~~~~~~~---------------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 307 -QLTTLEESV---------------FHSVGNLETLILDSNP 331 (477)
T ss_dssp -CCSCCCGGG---------------BSCGGGCCEEECCSSC
T ss_pred -cCceeCHhH---------------cCCCcccCEEEccCCC
Confidence 566665432 5578999999999876
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2.7e-21 Score=236.07 Aligned_cols=349 Identities=19% Similarity=0.124 Sum_probs=208.0
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc-cCcccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV-LPSSVSDLMNLRSL 569 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~L 569 (932)
..+++.+++++|.+....+. +.++++|++|++++| .+.......+..+++|++|++++|.+.. +|. . .+++|++|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCccCc-c-ccCCCCEE
Confidence 34566777777766654444 566777777777777 3432222334667777777777777653 333 2 66777777
Q ss_pred ccccccccCCCC-Chhc-cccCcEeecccCCCc-ccccccccCCCCCEEeCCCCCCc-ccCCCccCCCCCcceEEeecCC
Q 036714 570 LLRWCENLERVP-SLAK-LLALQYLDLEETGIE-EVPEGMEMLENLSHLYLSSPRLK-KFPTGILPRLRNLYKLKLSFGN 645 (932)
Q Consensus 570 ~L~~~~~l~~lp-~~~~-l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~~p~~~l~~l~~L~~L~l~~~~ 645 (932)
++++|.....+| .+.. +++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|...++++++|++|+++. +
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~-n 353 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF-N 353 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS-S
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC-C
Confidence 777766554666 4544 377777777777666 55666777777777777777765 56655456777777777773 3
Q ss_pred chhhhcHHHHHHHHh-ccceeEEEecChhh-hhhhhcccCCCCcceEEEEecccc-cCCceeecccceeEEEEeeccccc
Q 036714 646 EALRETVEEAARLSD-RLDTFEGIFSTLND-FNLYVKSTDGRGLKNYCLLLSAYW-MGGFLITDLEVHKSIFLIDCKICE 722 (932)
Q Consensus 646 ~~~~~~~~~l~~l~~-~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~ 722 (932)
......+..+..+ . +|+.|+++.|.+.. .+..+.......|+.+.+.-.... .....+.....++.+.+..+.+.+
T Consensus 354 ~l~~~~p~~l~~l-~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 354 EFSGELPESLTNL-SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp EEEECCCTTHHHH-TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ccCccccHHHHhh-hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 3443444556666 5 77777777665542 121221111234444443322211 001122334556777777776654
Q ss_pred cc-CcccCCcccceeeEeccCCccccc---cccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccc
Q 036714 723 RE-ETIVLPEDVQFLQMFEVSDVASLN---DFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVE 798 (932)
Q Consensus 723 ~~-~~~~~~~~L~~L~l~~~~~~~~l~---~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~ 798 (932)
.. ..+..+++|+.|++++|.....++ ..+++|+.|++++|.....+| ..+..+++|+.|++++|. ++...+..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~-l~~~~p~~ 509 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP--SGLSNCTNLNWISLSNNR-LTGEIPKW 509 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSC-CCSCCCGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC--HHHhcCCCCCEEEccCCc-cCCcCChH
Confidence 32 344556677778777776332221 223778888888875443433 245677788888888764 33222221
Q ss_pred cchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCccccCCCc
Q 036714 799 DEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLSLP 865 (932)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~l~ 865 (932)
++.+++|++|+|++|.-...++. ....+++|+.|++++|+--..+|..+.
T Consensus 510 ---------------~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 510 ---------------IGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp ---------------GGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred ---------------HhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCChHHh
Confidence 56788888888888765555655 555677888888888865557776443
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=6.2e-21 Score=210.50 Aligned_cols=288 Identities=19% Similarity=0.265 Sum_probs=222.0
Q ss_pred ccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc
Q 036714 480 RLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS 559 (932)
Q Consensus 480 ~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 559 (932)
.+..++. .....+++++++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+..+|.
T Consensus 55 ~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~- 127 (347)
T 4fmz_A 55 KVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNISDISP- 127 (347)
T ss_dssp CCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTSCCCCCGG-
T ss_pred ccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCCcccCchh-
Confidence 3344443 3446689999999999998876 679999999999999 7777763 6899999999999999998887
Q ss_pred ccccccccccccccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceE
Q 036714 560 VSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKL 639 (932)
Q Consensus 560 i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L 639 (932)
+..+++|++|++++|..+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 204 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCcccee
Confidence 889999999999999888888889999999999999999998876 8899999999999999988876 6899999999
Q ss_pred EeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecc
Q 036714 640 KLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCK 719 (932)
Q Consensus 640 ~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 719 (932)
+++.+ ....... +..+ ++|+.|+++.|.+...+.
T Consensus 205 ~l~~n-~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~------------------------------------------ 238 (347)
T 4fmz_A 205 TAYVN-QITDITP--VANM-TRLNSLKIGNNKITDLSP------------------------------------------ 238 (347)
T ss_dssp ECCSS-CCCCCGG--GGGC-TTCCEEECCSSCCCCCGG------------------------------------------
T ss_pred ecccC-CCCCCch--hhcC-CcCCEEEccCCccCCCcc------------------------------------------
Confidence 99954 3333222 6677 899999998776543221
Q ss_pred cccccCcccCCcccceeeEeccCC--ccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeecccccccccc
Q 036714 720 ICEREETIVLPEDVQFLQMFEVSD--VASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAV 797 (932)
Q Consensus 720 ~~~~~~~~~~~~~L~~L~l~~~~~--~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~ 797 (932)
+..+++|+.|++++|.. ++.+. .+++|+.|++++| .+++++ .+..+++|+.|++++|. +....+.
T Consensus 239 -------~~~l~~L~~L~l~~n~l~~~~~~~-~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~~ 305 (347)
T 4fmz_A 239 -------LANLSQLTWLEIGTNQISDINAVK-DLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQ-LGNEDME 305 (347)
T ss_dssp -------GTTCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSC-CCGGGHH
T ss_pred -------hhcCCCCCEEECCCCccCCChhHh-cCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCc-CCCcChh
Confidence 12334566666665531 11222 2289999999998 455553 45678899999999874 4443322
Q ss_pred ccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccC
Q 036714 798 EDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCP 855 (932)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~ 855 (932)
. +..+|+|++|++++|+ ++.++. ...+++|++|++++|+
T Consensus 306 ~---------------l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 306 V---------------IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp H---------------HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred H---------------hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 1 5678999999999986 666655 3457899999999885
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1.3e-21 Score=238.98 Aligned_cols=180 Identities=27% Similarity=0.273 Sum_probs=84.0
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCc-ccCccccccc-ccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIK-VLPSSVSDLM-NLRSL 569 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~-~L~~L 569 (932)
..++.+++++|.+....+..+..+++|++|++++|.....+|...+..+++|++|++++|.+. .+|..+..+. +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 344555555554443333334445555555555552222444443445555555555555544 4444444444 45555
Q ss_pred ccccccccCCCC-Chhc--cccCcEeecccCCCc-ccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCC
Q 036714 570 LLRWCENLERVP-SLAK--LLALQYLDLEETGIE-EVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGN 645 (932)
Q Consensus 570 ~L~~~~~l~~lp-~~~~--l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~ 645 (932)
++++|.....+| .+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+....+..++++++|+.|+++. +
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-n 452 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL-N 452 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS-S
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC-C
Confidence 555544333333 3333 445555555555444 3444555555555555555554432222245555555555552 2
Q ss_pred chhhhcHHHHHHHHhccceeEEEecChh
Q 036714 646 EALRETVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 646 ~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
......+..+..+ ++|+.|+++.|.+.
T Consensus 453 ~l~~~~p~~~~~l-~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 453 MLEGEIPQELMYV-KTLETLILDFNDLT 479 (768)
T ss_dssp CCCSCCCGGGGGC-TTCCEEECCSSCCC
T ss_pred cccCcCCHHHcCC-CCceEEEecCCccc
Confidence 2333333344444 55555555554443
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.3e-20 Score=227.95 Aligned_cols=163 Identities=25% Similarity=0.301 Sum_probs=128.8
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..+..+|.. .+.+++++++++|.+..+++..+.++++|++|++++| .+..++...|.++++|++|++++|.++.+
T Consensus 12 s~~~L~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 12 SHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CSSCCSSCCSC--SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCccccccc--cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCcc
Confidence 34456677754 3468999999999999888877888999999999998 67777666778899999999999999888
Q ss_pred Cc-cccccccccccccccccccCCCC--ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcccCCCccC-
Q 036714 557 PS-SVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKKFPTGILP- 631 (932)
Q Consensus 557 p~-~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~- 631 (932)
|. .++.+++|++|++++|.. ..+| .++++++|++|++++|.+... |..+..+++|++|++++|.+..++...+.
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred ChhhhccCCCCCEEECCCCcc-CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 86 588899999999998764 4444 588999999999999988765 45577888888888888887776654332
Q ss_pred -CCCCcceEEeec
Q 036714 632 -RLRNLYKLKLSF 643 (932)
Q Consensus 632 -~l~~L~~L~l~~ 643 (932)
.+++|++|+++.
T Consensus 168 ~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 168 FANSSLKKLELSS 180 (680)
T ss_dssp GTTCEESEEECTT
T ss_pred cccccccEEECCC
Confidence 457788888774
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.5e-21 Score=217.33 Aligned_cols=300 Identities=15% Similarity=0.167 Sum_probs=232.6
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-cccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSL 569 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L 569 (932)
..+++.+++.++.+..+|...+..+++|++|++++| .+..++...|..+++|++|++++|.+..+| ..++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 357899999999999999888888999999999999 788888777799999999999999999775 457899999999
Q ss_pred ccccccccCCCC-C-hhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCc
Q 036714 570 LLRWCENLERVP-S-LAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNE 646 (932)
Q Consensus 570 ~L~~~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 646 (932)
++++|. ++.+| . +.++++|++|++++|.+..++. .+..+++|++|++++|.+..++ ++.+++|+.|+++.+ .
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n-~ 197 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN-L 197 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS-C
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccc-c
Confidence 999965 66777 4 7999999999999999998754 5889999999999999988875 477899999999843 3
Q ss_pred hhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCc
Q 036714 647 ALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREET 726 (932)
Q Consensus 647 ~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 726 (932)
.... ... .+|+.|+++.|.+..++.. ....++.+.+..+.+.+. ..
T Consensus 198 l~~~-----~~~-~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~n~l~~~-~~ 243 (390)
T 3o6n_A 198 LSTL-----AIP-IAVEELDASHNSINVVRGP---------------------------VNVELTILKLQHNNLTDT-AW 243 (390)
T ss_dssp CSEE-----ECC-SSCSEEECCSSCCCEEECC---------------------------CCSSCCEEECCSSCCCCC-GG
T ss_pred cccc-----CCC-CcceEEECCCCeeeecccc---------------------------ccccccEEECCCCCCccc-HH
Confidence 3221 122 6889999987765443211 113466677777766654 34
Q ss_pred ccCCcccceeeEeccCCccc---cccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhh
Q 036714 727 IVLPEDVQFLQMFEVSDVAS---LNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETE 803 (932)
Q Consensus 727 ~~~~~~L~~L~l~~~~~~~~---l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~ 803 (932)
+..+++|+.|+++++..... ....+++|+.|+|++|. ++.++. ....+++|+.|++++| .++.++..
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~------ 313 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL--YGQPIPTLKVLDLSHN-HLLHVERN------ 313 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEEC--SSSCCTTCCEEECCSS-CCCCCGGG------
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCc--ccCCCCCCCEEECCCC-cceecCcc------
Confidence 56678999999999863222 12234899999999984 565543 3457889999999996 56655432
Q ss_pred hhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccC
Q 036714 804 KELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCP 855 (932)
Q Consensus 804 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~ 855 (932)
+..+++|++|++++++ ++.++ ...+++|+.|++++++
T Consensus 314 ----------~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 ----------QPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ----------HHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred ----------ccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 5579999999999985 66664 3457899999999874
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.9e-21 Score=226.33 Aligned_cols=359 Identities=18% Similarity=0.207 Sum_probs=240.8
Q ss_pred ccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc--cCccccccccc
Q 036714 489 EWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV--LPSSVSDLMNL 566 (932)
Q Consensus 489 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L 566 (932)
....+++++++++|.+..+++..+..+++|++|++++| .+..++...|+++++|++|++++|.+.. .|..++.+++|
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 34568999999999999998888889999999999999 7888888877999999999999999984 46788999999
Q ss_pred cccccccccccCCCC--ChhccccCcEeecccCCCcc-ccccccc------------------------CCCCCEEeCCC
Q 036714 567 RSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEE-VPEGMEM------------------------LENLSHLYLSS 619 (932)
Q Consensus 567 ~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~-lp~~~~~------------------------l~~L~~L~l~~ 619 (932)
++|++++|..+..+| .+.++++|++|++++|.+.. .|..+.. +++|++|++++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 999999988677776 58999999999999998875 4555554 45555555655
Q ss_pred CCCcccC---CCccCCCCCcceEEeecCCchhhhcHHHHH----HH----------------------------------
Q 036714 620 PRLKKFP---TGILPRLRNLYKLKLSFGNEALRETVEEAA----RL---------------------------------- 658 (932)
Q Consensus 620 ~~l~~~p---~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~----~l---------------------------------- 658 (932)
|.+..++ ..+...+++|+.|+++.+ ......+..+. .+
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred Cccccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 5554431 122233455555555421 22222222221 11
Q ss_pred ------------------------HhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCC----ceeecccce
Q 036714 659 ------------------------SDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGG----FLITDLEVH 710 (932)
Q Consensus 659 ------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~----~~~~~~~~l 710 (932)
..+|+.|+++.|.+..++..+. .....|+.+.+......... ......+.+
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS-QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH-HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH-hcCccccEEEccCCccccccccchhhhhccccC
Confidence 0334444444444333332221 11235555554433221100 012334678
Q ss_pred eEEEEeeccccccc---CcccCCcccceeeEeccCC--ccccccccCCccEEEEecCCCCcccccccccccCCCccEEEE
Q 036714 711 KSIFLIDCKICERE---ETIVLPEDVQFLQMFEVSD--VASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEV 785 (932)
Q Consensus 711 ~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~--~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l 785 (932)
+.+.+..+.+.+.. ..+..+++|+.|++++|.- ++.....+++|++|++++|. ++.++.. + .++|+.|++
T Consensus 364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~--~--~~~L~~L~L 438 (549)
T 2z81_A 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTC--I--PQTLEVLDV 438 (549)
T ss_dssp CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTT--S--CTTCSEEEC
T ss_pred cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccch--h--cCCceEEEC
Confidence 89999988876543 2356678999999999852 22222334899999999985 5555432 1 259999999
Q ss_pred eeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCccccCC-C
Q 036714 786 EDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLS-L 864 (932)
Q Consensus 786 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-l 864 (932)
++| .++.++ ..+|+|++|+|+++ .++.++. . ..+++|+.|++++| +++.+|.. +
T Consensus 439 s~N-~l~~~~-------------------~~l~~L~~L~Ls~N-~l~~ip~--~-~~l~~L~~L~Ls~N-~l~~~~~~~~ 493 (549)
T 2z81_A 439 SNN-NLDSFS-------------------LFLPRLQELYISRN-KLKTLPD--A-SLFPVLLVMKISRN-QLKSVPDGIF 493 (549)
T ss_dssp CSS-CCSCCC-------------------CCCTTCCEEECCSS-CCSSCCC--G-GGCTTCCEEECCSS-CCCCCCTTGG
T ss_pred CCC-Chhhhc-------------------ccCChhcEEECCCC-ccCcCCC--c-ccCccCCEEecCCC-ccCCcCHHHH
Confidence 986 455442 36899999999998 5777765 2 35789999999997 67777653 3
Q ss_pred cccCCCCCCCCCCcceEecchhhh
Q 036714 865 PLLDNGQPSPPPTLEVIKMEKELW 888 (932)
Q Consensus 865 ~~l~~~~~~~~~~L~~l~~~~~~~ 888 (932)
.. +++|+.+++..+-|
T Consensus 494 ~~--------l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 494 DR--------LTSLQKIWLHTNPW 509 (549)
T ss_dssp GG--------CTTCCEEECCSSCB
T ss_pred hc--------CcccCEEEecCCCc
Confidence 33 45788887776654
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=1.2e-20 Score=216.96 Aligned_cols=330 Identities=18% Similarity=0.230 Sum_probs=244.5
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
...++.+++.++.+..++. +..+++|++|++++| .+..++. +.++++|++|++++|.+..++. ++.+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcc--hhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 3568899999999888864 567899999999999 7777776 6899999999999999998887 89999999999
Q ss_pred cccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 571 LRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 571 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
+++|. ++.+|.+.++++|++|++++|.+..+| .+..+++|++|+++ +.+..++. ++++++|++|+++.+. ....
T Consensus 119 L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~ 192 (466)
T 1o6v_A 119 LFNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNK-VSDI 192 (466)
T ss_dssp CCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSC-CCCC
T ss_pred CCCCC-CCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCc-CCCC
Confidence 99864 667777999999999999999988886 48899999999996 44555554 6899999999999543 3222
Q ss_pred cHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCC
Q 036714 651 TVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLP 730 (932)
Q Consensus 651 ~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 730 (932)
..+..+ ++|+.|+++.|.+..... ....+.++.+.+.++.+... +.+..+
T Consensus 193 --~~l~~l-~~L~~L~l~~n~l~~~~~--------------------------~~~l~~L~~L~l~~n~l~~~-~~l~~l 242 (466)
T 1o6v_A 193 --SVLAKL-TNLESLIATNNQISDITP--------------------------LGILTNLDELSLNGNQLKDI-GTLASL 242 (466)
T ss_dssp --GGGGGC-TTCSEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCC-GGGGGC
T ss_pred --hhhccC-CCCCEEEecCCccccccc--------------------------ccccCCCCEEECCCCCcccc-hhhhcC
Confidence 346677 899999998876654321 11234466777777766554 245667
Q ss_pred cccceeeEeccCC--ccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhc
Q 036714 731 EDVQFLQMFEVSD--VASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELAT 808 (932)
Q Consensus 731 ~~L~~L~l~~~~~--~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 808 (932)
++|+.|++++|.. ...+ ..+++|+.|++++|. ++.+++ +..+++|+.|++++| .++.+++
T Consensus 243 ~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~------------ 304 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNEN-QLEDISP------------ 304 (466)
T ss_dssp TTCSEEECCSSCCCCCGGG-TTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSS-CCSCCGG------------
T ss_pred CCCCEEECCCCccccchhh-hcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCC-cccCchh------------
Confidence 8999999999863 2222 233899999999984 555554 567889999999986 4555543
Q ss_pred cccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCccccC--CCcccC----------CC-CCCCC
Q 036714 809 NTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSL--SLPLLD----------NG-QPSPP 875 (932)
Q Consensus 809 ~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~--~l~~l~----------~~-~~~~~ 875 (932)
+..+|+|+.|++++|. +..+.. ...+++|+.|++++| +++.++. .++.|+ .. ....+
T Consensus 305 -----~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l 374 (466)
T 1o6v_A 305 -----ISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTPLANL 374 (466)
T ss_dssp -----GGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTC
T ss_pred -----hcCCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccchhhcC
Confidence 4589999999999984 555433 346889999999987 4555532 111111 11 13456
Q ss_pred CCcceEecchhhhhh
Q 036714 876 PTLEVIKMEKELWES 890 (932)
Q Consensus 876 ~~L~~l~~~~~~~~~ 890 (932)
++|+.+++...-|..
T Consensus 375 ~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 375 TRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCCEEEEC
T ss_pred CCCCEEeccCCcccC
Confidence 778888776665554
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=2.8e-20 Score=217.31 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=123.0
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-Ccccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLRW 573 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 573 (932)
+++++++|.++.+|.... ++|++|++++| .+..++...|.++++|++|++++|.++.+ |..++.+++|++|+|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 578999999999987654 89999999999 78888877789999999999999999976 77899999999999999
Q ss_pred ccccCCCCChhccccCcEeecccCCCcc--cccccccCCCCCEEeCCCCCCcccCCCccCCCCCc--ceEEeecC
Q 036714 574 CENLERVPSLAKLLALQYLDLEETGIEE--VPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNL--YKLKLSFG 644 (932)
Q Consensus 574 ~~~l~~lp~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L--~~L~l~~~ 644 (932)
|. ++.+|.. .+++|++|++++|.+.. +|..++.+++|++|++++|.+... .+..+++| ++|+++.+
T Consensus 79 N~-l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 79 NK-LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp SC-CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEEC
T ss_pred Cc-eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecc
Confidence 65 6678844 89999999999999986 578999999999999999998763 25777888 99999854
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=4.9e-20 Score=218.02 Aligned_cols=173 Identities=22% Similarity=0.234 Sum_probs=138.6
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-cccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLLLRW 573 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~ 573 (932)
+.++.++.++..+|.... +++++|++++| .+..++...|.++++|++|++++|.+..++ ..+..+++|++|+|++
T Consensus 10 ~~~~c~~~~l~~ip~~l~---~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP---FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCSSCCSSSC---SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCccccCCCcc---ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 456666667888876442 57999999999 788887777799999999999999999775 5688999999999999
Q ss_pred ccccCCCC-ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcc--cCCCccCCCCCcceEEeecCCchhh
Q 036714 574 CENLERVP-SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKK--FPTGILPRLRNLYKLKLSFGNEALR 649 (932)
Q Consensus 574 ~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~~~~ 649 (932)
|......| .|+++++|++|++++|.+..+|. .++.+++|++|++++|.+.. +|.. ++++++|++|+++. +....
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~-n~l~~ 163 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSS-NKIQS 163 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTT-SCCCE
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcC-Cccce
Confidence 76444444 69999999999999999998876 68999999999999999876 4555 79999999999994 34444
Q ss_pred hcHHHHHHHHhcc----ceeEEEecChhh
Q 036714 650 ETVEEAARLSDRL----DTFEGIFSTLND 674 (932)
Q Consensus 650 ~~~~~l~~l~~~L----~~L~l~~~~~~~ 674 (932)
..+..++.+ .+| ..|+++.|.+..
T Consensus 164 ~~~~~~~~l-~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 164 IYCTDLRVL-HQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp ECGGGGHHH-HTCTTCCCEEECTTCCCCE
T ss_pred ecHHHccch-hccchhhhhcccCCCCcee
Confidence 445566666 777 677776665543
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=7.6e-21 Score=225.35 Aligned_cols=299 Identities=16% Similarity=0.178 Sum_probs=232.3
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-cccccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLL 570 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~ 570 (932)
.+++.+++.++.+..+|+..+..+++|++|++++| .+..++...|..+++|++|+|++|.+..+|. .++.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46788999999999999888888999999999999 7778877677999999999999999997765 468999999999
Q ss_pred cccccccCCCC-C-hhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCch
Q 036714 571 LRWCENLERVP-S-LAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEA 647 (932)
Q Consensus 571 L~~~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 647 (932)
|++|. ++.+| . |+++++|++|++++|.+..+|+ .+..+++|++|++++|.+..++ ++.+++|+.|+++.+ .+
T Consensus 130 L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n-~l 204 (597)
T 3oja_B 130 LERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN-LL 204 (597)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS-CC
T ss_pred eeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC-cc
Confidence 99975 56676 4 7999999999999999998755 6889999999999999998876 467899999999843 33
Q ss_pred hhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcc
Q 036714 648 LRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETI 727 (932)
Q Consensus 648 ~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 727 (932)
... ... .+|+.|+++.|.+..++... ...+..+.+.++.+.+. ..+
T Consensus 205 ~~l-----~~~-~~L~~L~ls~n~l~~~~~~~---------------------------~~~L~~L~L~~n~l~~~-~~l 250 (597)
T 3oja_B 205 STL-----AIP-IAVEELDASHNSINVVRGPV---------------------------NVELTILKLQHNNLTDT-AWL 250 (597)
T ss_dssp SEE-----ECC-TTCSEEECCSSCCCEEECSC---------------------------CSCCCEEECCSSCCCCC-GGG
T ss_pred ccc-----cCC-chhheeeccCCccccccccc---------------------------CCCCCEEECCCCCCCCC-hhh
Confidence 221 123 68899999887664332110 13466677777766653 345
Q ss_pred cCCcccceeeEeccCCccc---cccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhh
Q 036714 728 VLPEDVQFLQMFEVSDVAS---LNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEK 804 (932)
Q Consensus 728 ~~~~~L~~L~l~~~~~~~~---l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~ 804 (932)
..+++|+.|+++++..... ....+++|+.|+|++|. ++.++. ....+++|+.|+|++| .++.++..
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~~------- 319 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL--YGQPIPTLKVLDLSHN-HLLHVERN------- 319 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC--SSSCCTTCCEEECCSS-CCCCCGGG-------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCc--ccccCCCCcEEECCCC-CCCccCcc-------
Confidence 6678999999999873222 12233899999999984 565543 3456889999999996 45555432
Q ss_pred hhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccC
Q 036714 805 ELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCP 855 (932)
Q Consensus 805 ~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~ 855 (932)
+..+|+|+.|+|++|. +..++ ...+++|+.|+++++|
T Consensus 320 ---------~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 ---------QPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---------HHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred ---------cccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 5689999999999985 55553 3457899999999876
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=2e-20 Score=213.20 Aligned_cols=315 Identities=15% Similarity=0.146 Sum_probs=233.4
Q ss_pred CCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCCChhccccCcE
Q 036714 512 SPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQY 591 (932)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~ 591 (932)
+.++++|++|++++| .+..+| . +..+++|++|++++|.++.+| ++.+++|++|++++|. ++.+| ++++++|++
T Consensus 38 ~~~l~~L~~L~Ls~n-~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNS-SITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSS-CCCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCE
T ss_pred hhHcCCCCEEEccCC-CcccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCE
Confidence 456789999999999 777777 3 689999999999999999987 8899999999999976 56665 889999999
Q ss_pred eecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecC
Q 036714 592 LDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFST 671 (932)
Q Consensus 592 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~ 671 (932)
|++++|.++.+| ++.+++|++|++++|.++.++ ++++++|++|+++.+...... .+..+ ++|+.|+++.|.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l-~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQ-TQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTC-TTCCEEECCSSC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccC-CcCCEEECCCCc
Confidence 999999999986 889999999999999998875 689999999999965443333 35667 899999999887
Q ss_pred hhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCcccccccc
Q 036714 672 LNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASLNDFS 751 (932)
Q Consensus 672 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 751 (932)
+..++ ....+.++.+.+..+.+.+. .+..+++|+.|+++++.--.-....+
T Consensus 182 l~~l~---------------------------l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip~~~l 232 (457)
T 3bz5_A 182 ITELD---------------------------VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEIDVTPL 232 (457)
T ss_dssp CCCCC---------------------------CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred cceec---------------------------cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccCcccc
Confidence 65432 11123455666666666554 24566789999998886322112334
Q ss_pred CCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCccc
Q 036714 752 HDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREF 831 (932)
Q Consensus 752 ~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L 831 (932)
++|+.|++++|. ++.++ .+ .+++|+.|++++ +.++.+...... .... .....+++|+.|++++|+.+
T Consensus 233 ~~L~~L~l~~N~-l~~~~-~~---~l~~L~~L~l~~-n~L~~L~l~~n~-----~~~~--~~~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 233 TQLTYFDCSVNP-LTELD-VS---TLSKLTTLHCIQ-TDLLEIDLTHNT-----QLIY--FQAEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp TTCSEEECCSSC-CSCCC-CT---TCTTCCEEECTT-CCCSCCCCTTCT-----TCCE--EECTTCTTCCCCCCTTCTTC
T ss_pred CCCCEEEeeCCc-CCCcC-HH---HCCCCCEEeccC-CCCCEEECCCCc-----cCCc--ccccccccCCEEECCCCccc
Confidence 899999999984 55554 33 444555555443 233333211100 0000 01447899999999999988
Q ss_pred ccccCCCCcccCCCccEEEecccCCCccccCCCcccCCCCCCCCCCcceEecchhhhh
Q 036714 832 KSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVIKMEKELWE 889 (932)
Q Consensus 832 ~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l~~~~~~~~ 889 (932)
+.++. .+++|+.|++++|++|+.+..+-+.++.+....|++|+.+++..+...
T Consensus 300 ~~l~~-----~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 300 YLLDC-----QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CEEEC-----TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCC
T ss_pred ceecc-----CCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCCCC
Confidence 88875 346889999999999999988777887777888999999987655443
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=2.2e-20 Score=214.39 Aligned_cols=340 Identities=17% Similarity=0.185 Sum_probs=233.4
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCc-cc-Cccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIK-VL-PSSVSDLMNLRSLLLR 572 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~l-p~~i~~l~~L~~L~L~ 572 (932)
+.+...+++++.+|. . .++|++|++++| .+..++...|.++++|++|++++|.+. .+ |..+..+++|++|+|+
T Consensus 13 ~~~~c~~~~l~~lp~-l---~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L---PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCC-C---CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcccCCC-C---CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 456677778888876 2 278999999999 777776666799999999999999986 55 5678999999999999
Q ss_pred cccccCCCC-ChhccccCcEeecccCCCcc-cccc--cccCCCCCEEeCCCCCCcccCC-CccCCCCCcceEEeecCCch
Q 036714 573 WCENLERVP-SLAKLLALQYLDLEETGIEE-VPEG--MEMLENLSHLYLSSPRLKKFPT-GILPRLRNLYKLKLSFGNEA 647 (932)
Q Consensus 573 ~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~ 647 (932)
+|......| .++++++|++|++++|.+.. +|.. +..+++|++|++++|.+..+++ ..++++++|++|+++.+ .+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CB
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cc
Confidence 987655557 79999999999999999985 4444 8899999999999999988754 44789999999999943 44
Q ss_pred hhhcHHHHHHHH-hccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccC-
Q 036714 648 LRETVEEAARLS-DRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREE- 725 (932)
Q Consensus 648 ~~~~~~~l~~l~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~- 725 (932)
....+..+..+. .+|+.|+++.+.+..++....... ..........++.+.+.++.+.+...
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~----------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE----------------KCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH----------------HHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred cccChhhhhccccccccccccccCcccccchhhcccc----------------ccccccccceeeeEecCCCcccccchh
Confidence 443333343331 567888887766554321110000 00001112346666776665543221
Q ss_pred ---cccCCcccceeeEeccCCcccc--------------cc-ccCCccEEEEecCCCCcccccccccccCCCccEEEEee
Q 036714 726 ---TIVLPEDVQFLQMFEVSDVASL--------------ND-FSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVED 787 (932)
Q Consensus 726 ---~~~~~~~L~~L~l~~~~~~~~l--------------~~-~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~ 787 (932)
.....+.|+.|++.++...... .. ..++|+.|++++|.. ..+++ ..+..+++|+.|++++
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLK-SVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC-CEECT-TTTTTCTTCCEEECTT
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc-cccch-hhcccCCCCCEEECCC
Confidence 1122367888888877422111 00 126899999999864 44332 3577889999999998
Q ss_pred ccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCccc-cCCCcc
Q 036714 788 CYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRL-SLSLPL 866 (932)
Q Consensus 788 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~l-p~~l~~ 866 (932)
| .++.+.+.. +..+++|++|+++++. ++.+.. .....+++|+.|++++| +++.+ |..+..
T Consensus 309 n-~l~~~~~~~---------------~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 369 (455)
T 3v47_A 309 N-EINKIDDNA---------------FWGLTHLLKLNLSQNF-LGSIDS-RMFENLDKLEVLDLSYN-HIRALGDQSFLG 369 (455)
T ss_dssp S-CCCEECTTT---------------TTTCTTCCEEECCSSC-CCEECG-GGGTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred C-cccccChhH---------------hcCcccCCEEECCCCc-cCCcCh-hHhcCcccCCEEECCCC-cccccChhhccc
Confidence 6 455554322 6689999999999984 565533 13445789999999998 56666 433332
Q ss_pred cCCCCCCCCCCcceEecch
Q 036714 867 LDNGQPSPPPTLEVIKMEK 885 (932)
Q Consensus 867 l~~~~~~~~~~L~~l~~~~ 885 (932)
+++|+.+++..
T Consensus 370 --------l~~L~~L~L~~ 380 (455)
T 3v47_A 370 --------LPNLKELALDT 380 (455)
T ss_dssp --------CTTCCEEECCS
T ss_pred --------cccccEEECCC
Confidence 45666665543
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.7e-19 Score=222.50 Aligned_cols=256 Identities=16% Similarity=0.099 Sum_probs=131.4
Q ss_pred CCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcce
Q 036714 610 ENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKN 689 (932)
Q Consensus 610 ~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 689 (932)
++|+.|++++|.+..+++..++.+++|+.|+++. +.+....+..+..+ ++|+.|+++.|.+....... ......|+.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSN-FYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCS-CSSCTTCCE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCC-CcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHH-hcCCCCCCE
Confidence 5678888888877777666678888888888873 34444444556677 78888888877665431110 011224444
Q ss_pred EEEEecccccC-CceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCcccccc-------------------
Q 036714 690 YCLLLSAYWMG-GFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASLND------------------- 749 (932)
Q Consensus 690 ~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~------------------- 749 (932)
+.+..+..... ...+...+.++.+.+.++.+... ..+++|+.|.++++.-. .+..
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI----HFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLD 417 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC----SSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSST
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc----cCCCCcchhccCCCCcc-cccccccccceeecccCccccCc
Confidence 44433222111 11223345566677766665432 22455666666555421 1111
Q ss_pred ------ccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCcccee
Q 036714 750 ------FSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKF 823 (932)
Q Consensus 750 ------~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L 823 (932)
.+++|+.|+|++|. ++.+++...+..+++|+.|+++++ .++...... ... ..+..+++|+.|
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~-------~~~---~~~~~l~~L~~L 485 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETE-------LCW---DVFEGLSHLQVL 485 (844)
T ss_dssp THHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSC-------CCS---SCSSCBCCEECC
T ss_pred hhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCC-ccccccccc-------cch---hhhcCcccccEE
Confidence 12455555555543 222222112223445555555543 222111100 000 014466777777
Q ss_pred eccCCcccccccCCCCcccCCCccEEEecccCCCccccCCC------------cccCCCCCCCCCCcceEecchhhh
Q 036714 824 YLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLSL------------PLLDNGQPSPPPTLEVIKMEKELW 888 (932)
Q Consensus 824 ~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~l------------~~l~~~~~~~~~~L~~l~~~~~~~ 888 (932)
+|+++ .++.++.. ....+++|+.|+++++ +|+.+|.+. +.++...+..+++|+.+++..+-|
T Consensus 486 ~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 486 YLNHN-YLNSLPPG-VFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559 (844)
T ss_dssp CCCHH-HHTTCCTT-SSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECC
T ss_pred ECCCC-cccccChh-HccchhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCc
Confidence 77776 45555441 2234677888888776 566665421 122334445566777777665544
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.9e-19 Score=212.10 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=121.3
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-Cccccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLR 572 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~ 572 (932)
.++++++++.++.+|.... ++|++|++++| .+..++...|.++++|++|++++|.++.+ |..+..+++|++|+|+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP---PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC---TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCccCCCCCC---CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 4789999999999987653 79999999999 78888877789999999999999999977 6778999999999999
Q ss_pred cccccCCCCChhccccCcEeecccCCCcccc--cccccCCCCCEEeCCCCCCcccCCCccCCCCCc--ceEEeecC
Q 036714 573 WCENLERVPSLAKLLALQYLDLEETGIEEVP--EGMEMLENLSHLYLSSPRLKKFPTGILPRLRNL--YKLKLSFG 644 (932)
Q Consensus 573 ~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L--~~L~l~~~ 644 (932)
+|. ++.+|.. .+++|++|++++|.+..+| ..++.+++|++|++++|.+.... +..+++| ++|+++.+
T Consensus 109 ~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 109 HNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLV 179 (562)
T ss_dssp TSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEES
T ss_pred CCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecc
Confidence 965 6688844 8999999999999999764 78999999999999999987643 3555555 88888754
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=4.2e-19 Score=214.57 Aligned_cols=174 Identities=25% Similarity=0.272 Sum_probs=145.6
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-Ccccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLRW 573 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 573 (932)
+.++.++++++.+|.... +++++|++++| .+..++...|.++++|++|++++|.+..+ |..++.+++|++|+|++
T Consensus 7 ~~~~cs~~~L~~ip~~~~---~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP---TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCSC---TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccccccccC---CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 457778888888886543 78999999999 78888888789999999999999999866 66788999999999999
Q ss_pred ccccCCCC--ChhccccCcEeecccCCCcccc-cccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 574 CENLERVP--SLAKLLALQYLDLEETGIEEVP-EGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 574 ~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
|. ++.+| .|+++++|++|++++|.+..+| ..++.+++|++|++++|.+...+++.++++++|++|+++. +.+...
T Consensus 83 n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 160 (680)
T 1ziw_A 83 NE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQAL 160 (680)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCB
T ss_pred Cc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-Cccccc
Confidence 75 56666 4999999999999999999886 5689999999999999999888777789999999999994 344455
Q ss_pred cHHHHH--HHHhccceeEEEecChhhh
Q 036714 651 TVEEAA--RLSDRLDTFEGIFSTLNDF 675 (932)
Q Consensus 651 ~~~~l~--~l~~~L~~L~l~~~~~~~~ 675 (932)
....+. .+ .+|+.|+++.|.+...
T Consensus 161 ~~~~~~~~~~-~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 161 KSEELDIFAN-SSLKKLELSSNQIKEF 186 (680)
T ss_dssp CHHHHGGGTT-CEESEEECTTCCCCCB
T ss_pred CHHHhhcccc-ccccEEECCCCccccc
Confidence 555544 34 7899999988876543
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=3e-20 Score=202.46 Aligned_cols=148 Identities=29% Similarity=0.460 Sum_probs=129.6
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLL 571 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L 571 (932)
..++.+++++|.+..+|...+ .+++|++|++++| .+..+|..+ ..+++|++|+|++|.+..+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n-~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAA-GLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGG-GGTTCSEEEEESS-CCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhh-hCCCCCEEECCCC-CccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 357889999999998887654 5899999999999 666888765 8899999999999999999999999999999999
Q ss_pred ccccccCCCC-Chhc---------cccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEe
Q 036714 572 RWCENLERVP-SLAK---------LLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKL 641 (932)
Q Consensus 572 ~~~~~l~~lp-~~~~---------l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l 641 (932)
++|+.+..+| .+.. +++|++|++++|.++.+|..++.+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEEC
Confidence 9998888888 5654 9999999999999999999999999999999999998888876 688888888888
Q ss_pred ec
Q 036714 642 SF 643 (932)
Q Consensus 642 ~~ 643 (932)
+.
T Consensus 237 s~ 238 (328)
T 4fcg_A 237 RG 238 (328)
T ss_dssp TT
T ss_pred cC
Confidence 74
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=3.8e-19 Score=194.59 Aligned_cols=142 Identities=23% Similarity=0.329 Sum_probs=62.5
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-Cccccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLR 572 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~ 572 (932)
++.+++.++.++.+|.... +++++|++++| .+..++...|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 33 l~~l~~~~~~l~~lp~~~~---~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP---PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC---TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCccccCccCC---CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3444444444444443221 34444555544 34444443344445555555555544433 4444444555555554
Q ss_pred cccccCCCC-ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcc--cCCCccCCCCCcceEEee
Q 036714 573 WCENLERVP-SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKK--FPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 573 ~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~--~p~~~l~~l~~L~~L~l~ 642 (932)
+|. ++.+| .+. ++|++|++++|.+..++. .+..+++|++|++++|.+.. +....+.++++|++|+++
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 432 33333 222 345555555554444432 23444455555555444432 222224444555555444
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.8e-19 Score=197.28 Aligned_cols=167 Identities=22% Similarity=0.287 Sum_probs=108.6
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-Ccccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLL 571 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L 571 (932)
.++.++++++.++.+|.... ++|++|++++| .+..++...|.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC---TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCCC---CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 46677777777777765443 56777888777 56666655567777888888887777765 566777778888888
Q ss_pred ccccccCCCC-ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcc--cCCCccCCCCCcceEEeecCCch
Q 036714 572 RWCENLERVP-SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKK--FPTGILPRLRNLYKLKLSFGNEA 647 (932)
Q Consensus 572 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~~ 647 (932)
++|. ++.+| .+. ++|++|++++|.+..+|.. +..+++|++|++++|.+.. ++...++.+ +|+.|+++.+ .+
T Consensus 110 ~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l 184 (332)
T 2ft3_A 110 SKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KL 184 (332)
T ss_dssp CSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BC
T ss_pred CCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CC
Confidence 7754 45666 333 6778888888777777654 6777788888887777653 444445666 7777777733 22
Q ss_pred hhhcHHHHHHHHhccceeEEEecCh
Q 036714 648 LRETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 648 ~~~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
.... ..+ . ++|+.|+++.|.+
T Consensus 185 ~~l~-~~~--~-~~L~~L~l~~n~i 205 (332)
T 2ft3_A 185 TGIP-KDL--P-ETLNELHLDHNKI 205 (332)
T ss_dssp SSCC-SSS--C-SSCSCCBCCSSCC
T ss_pred CccC-ccc--c-CCCCEEECCCCcC
Confidence 2211 000 1 4666666665543
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=6.9e-19 Score=191.70 Aligned_cols=237 Identities=20% Similarity=0.330 Sum_probs=148.7
Q ss_pred CCceeEEEccCCCCcccCccccccccccccccccccccCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCC
Q 036714 540 MHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLS 618 (932)
Q Consensus 540 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 618 (932)
...++.|+|++|.++.+|..++.+++|++|+|++|. +..+| .++++++|++|++++|.+..+|..++.+++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 355666777777777777667677777777777654 33666 5777777777777777777777777777777777777
Q ss_pred CCC-CcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEeccc
Q 036714 619 SPR-LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAY 697 (932)
Q Consensus 619 ~~~-l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 697 (932)
+|. +..+|..+ +. ..+. ..+..+ ++|+.|+++.|.+..
T Consensus 159 ~n~~~~~~p~~~-~~------~~~~----------~~~~~l-~~L~~L~L~~n~l~~----------------------- 197 (328)
T 4fcg_A 159 ACPELTELPEPL-AS------TDAS----------GEHQGL-VNLQSLRLEWTGIRS----------------------- 197 (328)
T ss_dssp EETTCCCCCSCS-EE------EC-C----------CCEEES-TTCCEEEEEEECCCC-----------------------
T ss_pred CCCCccccChhH-hh------ccch----------hhhccC-CCCCEEECcCCCcCc-----------------------
Confidence 755 44455432 21 0000 001123 455555555443221
Q ss_pred ccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCccccccccCCccEEEEecCCCCcccccccccccC
Q 036714 698 WMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPAL 777 (932)
Q Consensus 698 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L 777 (932)
.|..+..+ ++|++|+|++|. ++.+++ .+..+
T Consensus 198 -------------------------------lp~~l~~l---------------~~L~~L~L~~N~-l~~l~~--~l~~l 228 (328)
T 4fcg_A 198 -------------------------------LPASIANL---------------QNLKSLKIRNSP-LSALGP--AIHHL 228 (328)
T ss_dssp -------------------------------CCGGGGGC---------------TTCCEEEEESSC-CCCCCG--GGGGC
T ss_pred -------------------------------chHhhcCC---------------CCCCEEEccCCC-CCcCch--hhccC
Confidence 11223333 677777777764 344443 35677
Q ss_pred CCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCC
Q 036714 778 QNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKL 857 (932)
Q Consensus 778 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L 857 (932)
++|+.|++++|.....++.. +..+++|++|+|++|..+..++. ....+++|+.|++++|+.+
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~----------------~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPI----------------FGGRAPLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCC----------------TTCCCCCCEEECTTCTTCCBCCT--TGGGCTTCCEEECTTCTTC
T ss_pred CCCCEEECcCCcchhhhHHH----------------hcCCCCCCEEECCCCCchhhcch--hhhcCCCCCEEeCCCCCch
Confidence 78888888877665554432 55788888888888887777776 4566788888888888888
Q ss_pred ccccCCCcccCCCCCCCCCCcceEecchhhhhhccc
Q 036714 858 KRLSLSLPLLDNGQPSPPPTLEVIKMEKELWESLEW 893 (932)
Q Consensus 858 ~~lp~~l~~l~~~~~~~~~~L~~l~~~~~~~~~l~~ 893 (932)
..+|..+.++ ++|+.+.+.......+.+
T Consensus 291 ~~iP~~l~~L--------~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 291 SRLPSLIAQL--------PANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp CCCCGGGGGS--------CTTCEEECCGGGSCC---
T ss_pred hhccHHHhhc--------cCceEEeCCHHHHHHHhh
Confidence 8888776665 467777777655554444
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1e-19 Score=197.12 Aligned_cols=148 Identities=18% Similarity=0.252 Sum_probs=80.2
Q ss_pred ccceeecccccccc--cCCCcCCCCCCceEEEeec-CCCccCCChhhhccCCceeEEEccCCCCc-ccCccccccccccc
Q 036714 493 NLERVSLMMNDIEE--IPSYMSPHCDILSTLLLQA-NGNLWTIPECFFVYMHGLKVLNLSRTNIK-VLPSSVSDLMNLRS 568 (932)
Q Consensus 493 ~~~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~ 568 (932)
++++++++++.+.. ..+..+.++++|++|++++ |.....+|..+ .++++|++|++++|.+. .+|..+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45566666665553 2222344556666666663 42223444433 55666666666666655 55555666666666
Q ss_pred cccccccccCCCC-ChhccccCcEeecccCCCc-ccccccccCC-CCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 569 LLLRWCENLERVP-SLAKLLALQYLDLEETGIE-EVPEGMEMLE-NLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 569 L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
|++++|.....+| .+.++++|++|++++|.+. .+|..+..++ +|++|++++|.+....+..+..++ |+.|+++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 6666654443455 4666666666666666655 5555565555 566666666655422222244444 5555555
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=4.8e-19 Score=193.89 Aligned_cols=261 Identities=19% Similarity=0.207 Sum_probs=174.9
Q ss_pred CceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-ccccccccccccccccccccCCCC-ChhccccCcEeec
Q 036714 517 ILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDL 594 (932)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l 594 (932)
+++.++++++ .+..+|..+ .++|++|++++|.+..++ ..+..+++|++|++++|......| .++++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 7899999998 788898765 468999999999999775 578999999999999976444446 6999999999999
Q ss_pred ccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCch-hhhcHHHHHHHHhccceeEEEecChh
Q 036714 595 EETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEA-LRETVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 595 ~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
++|.+..+|..+. ++|++|++++|.+..+|...++++++|++|+++.+.-. ....+..+..+ +|+.|+++.|.+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCC
Confidence 9999999998776 89999999999999999887899999999999843221 11222222221 5666666655543
Q ss_pred hhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCcc----cccc
Q 036714 674 DFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVA----SLND 749 (932)
Q Consensus 674 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~l~~ 749 (932)
.++. ..+++|+.|+++++.... .+..
T Consensus 186 ~l~~--------------------------------------------------~~~~~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 186 GIPK--------------------------------------------------DLPETLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp SCCS--------------------------------------------------SSCSSCSCCBCCSSCCCCCCTTSSTT
T ss_pred ccCc--------------------------------------------------cccCCCCEEECCCCcCCccCHHHhcC
Confidence 3211 111345555555443111 1112
Q ss_pred ccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCc
Q 036714 750 FSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLR 829 (932)
Q Consensus 750 ~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 829 (932)
+++|+.|++++|. ++.+++ ..+..+++|+.|+++++ .++.++.. +..+++|+.|+++++
T Consensus 216 -l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~----------------l~~l~~L~~L~l~~N- 274 (332)
T 2ft3_A 216 -YSKLYRLGLGHNQ-IRMIEN-GSLSFLPTLRELHLDNN-KLSRVPAG----------------LPDLKLLQVVYLHTN- 274 (332)
T ss_dssp -CTTCSCCBCCSSC-CCCCCT-TGGGGCTTCCEEECCSS-CCCBCCTT----------------GGGCTTCCEEECCSS-
T ss_pred -CCCCCEEECCCCc-CCcCCh-hHhhCCCCCCEEECCCC-cCeecChh----------------hhcCccCCEEECCCC-
Confidence 2677777777763 344332 24556677777777764 44544332 446777777777775
Q ss_pred ccccccCCCCc-----ccCCCccEEEecccCC
Q 036714 830 EFKSFCSNNGV-----LVCNSLQEIEVHRCPK 856 (932)
Q Consensus 830 ~L~~i~~~~~~-----~~~p~L~~L~i~~C~~ 856 (932)
.++.++..... ..+++|+.|++.++|-
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCccChhHccccccccccccccceEeecCcc
Confidence 35555432111 1145677777777663
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=3.1e-18 Score=194.90 Aligned_cols=278 Identities=22% Similarity=0.286 Sum_probs=164.9
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
..+++.+++++|.++.+|.. +++|++|++++| .+..+|. ..++|++|++++|.++.+| .++.+++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n-~l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCccccc----cCCCcEEECCCC-ccCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEE
Confidence 45678888888887776542 367888888877 5655553 1257888888888887777 477888888888
Q ss_pred cccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 571 LRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 571 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
+++|. ++.+|.. ..+|++|++++|.++.+| .++.+++|++|++++|.+..+|.. .++|++|+++.+ .....
T Consensus 160 l~~N~-l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n-~l~~l 230 (454)
T 1jl5_A 160 VDNNS-LKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNN-ILEEL 230 (454)
T ss_dssp CCSSC-CSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSSC
T ss_pred CCCCc-CcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCC-cCCcc
Confidence 88764 5556632 247888888888877776 577888888888888887776653 257778888743 33222
Q ss_pred cHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCC
Q 036714 651 TVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLP 730 (932)
Q Consensus 651 ~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 730 (932)
. .+..+ ++|+.|+++.|.+..++.. ...++.+.+..+.+.+... .+
T Consensus 231 p--~~~~l-~~L~~L~l~~N~l~~l~~~----------------------------~~~L~~L~l~~N~l~~l~~---~~ 276 (454)
T 1jl5_A 231 P--ELQNL-PFLTTIYADNNLLKTLPDL----------------------------PPSLEALNVRDNYLTDLPE---LP 276 (454)
T ss_dssp C--CCTTC-TTCCEEECCSSCCSSCCSC----------------------------CTTCCEEECCSSCCSCCCC---CC
T ss_pred c--ccCCC-CCCCEEECCCCcCCccccc----------------------------ccccCEEECCCCcccccCc---cc
Confidence 1 35666 7788888877665543211 0223344444444433221 23
Q ss_pred cccceeeEeccCCccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccc
Q 036714 731 EDVQFLQMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNT 810 (932)
Q Consensus 731 ~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 810 (932)
++|+.|+++++. +..+...+++|+.|++++|. ++.++. + .++|+.|+++++ .++.++.
T Consensus 277 ~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~-l~~i~~---~--~~~L~~L~Ls~N-~l~~lp~-------------- 334 (454)
T 1jl5_A 277 QSLTFLDVSENI-FSGLSELPPNLYYLNASSNE-IRSLCD---L--PPSLEELNVSNN-KLIELPA-------------- 334 (454)
T ss_dssp TTCCEEECCSSC-CSEESCCCTTCCEEECCSSC-CSEECC---C--CTTCCEEECCSS-CCSCCCC--------------
T ss_pred CcCCEEECcCCc-cCcccCcCCcCCEEECcCCc-CCcccC---C--cCcCCEEECCCC-ccccccc--------------
Confidence 456666665553 22222333566666666653 232211 1 135666666653 3443321
Q ss_pred cccccccCccceeeccCCcccccccCCCCcccCCCccEEEeccc
Q 036714 811 IINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRC 854 (932)
Q Consensus 811 ~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C 854 (932)
.+++|++|+++++ .++.++. .+++|++|++++|
T Consensus 335 -----~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N 367 (454)
T 1jl5_A 335 -----LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYN 367 (454)
T ss_dssp -----CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred -----cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCC
Confidence 2456666666665 3444433 2456666666655
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1.3e-19 Score=196.16 Aligned_cols=251 Identities=15% Similarity=0.117 Sum_probs=176.2
Q ss_pred CCceEEEeecCCCcc--CCChhhhccCCceeEEEccC-CCCc-ccCccccccccccccccccccccCCCC-ChhccccCc
Q 036714 516 DILSTLLLQANGNLW--TIPECFFVYMHGLKVLNLSR-TNIK-VLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQ 590 (932)
Q Consensus 516 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~-~~~~-~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~ 590 (932)
.+++.|++++|.-.. .+|..+ .++++|++|++++ |.+. .+|..++.+++|++|+|++|.....+| .+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999993333 577654 8899999999995 7776 789899999999999999987665788 799999999
Q ss_pred EeecccCCCc-ccccccccCCCCCEEeCCCCCCc-ccCCCccCCCC-CcceEEeecCCchhhhcHHHHHHHHhccceeEE
Q 036714 591 YLDLEETGIE-EVPEGMEMLENLSHLYLSSPRLK-KFPTGILPRLR-NLYKLKLSFGNEALRETVEEAARLSDRLDTFEG 667 (932)
Q Consensus 591 ~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~~p~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l 667 (932)
+|++++|.+. .+|..+..+++|++|++++|.+. .+|.. ++.++ +|++|+++. +.+....+..+..+ . |+.|++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l-~-L~~L~L 204 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISR-NRLTGKIPPTFANL-N-LAFVDL 204 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCS-SEEEEECCGGGGGC-C-CSEEEC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcC-CeeeccCChHHhCC-c-ccEEEC
Confidence 9999999888 68889999999999999999987 66665 57787 899999983 34443444445554 4 666666
Q ss_pred EecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCcccc
Q 036714 668 IFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASL 747 (932)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l 747 (932)
+.|.+... .+..+..+
T Consensus 205 s~N~l~~~-----------------------------------------------------~~~~~~~l----------- 220 (313)
T 1ogq_A 205 SRNMLEGD-----------------------------------------------------ASVLFGSD----------- 220 (313)
T ss_dssp CSSEEEEC-----------------------------------------------------CGGGCCTT-----------
T ss_pred cCCcccCc-----------------------------------------------------CCHHHhcC-----------
Confidence 65432210 11122222
Q ss_pred ccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccC
Q 036714 748 NDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWG 827 (932)
Q Consensus 748 ~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 827 (932)
++|+.|++++|......+. +..+++|+.|+++++. ++...+.. +..+++|+.|+|++
T Consensus 221 ----~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~p~~---------------l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 221 ----KNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNR-IYGTLPQG---------------LTQLKFLHSLNVSF 277 (313)
T ss_dssp ----SCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSSC-CEECCCGG---------------GGGCTTCCEEECCS
T ss_pred ----CCCCEEECCCCceeeecCc---ccccCCCCEEECcCCc-ccCcCChH---------------HhcCcCCCEEECcC
Confidence 6777777777654333222 4456788888887753 33222211 55778888888887
Q ss_pred CcccccccCCCCcccCCCccEEEecccCCCcccc
Q 036714 828 LREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLS 861 (932)
Q Consensus 828 ~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp 861 (932)
+.--..++. . ..+++|+.|++.+++.+...|
T Consensus 278 N~l~~~ip~--~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 278 NNLCGEIPQ--G-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SEEEEECCC--S-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcccccCCC--C-ccccccChHHhcCCCCccCCC
Confidence 754335554 2 446677777777777666554
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=2.8e-18 Score=201.29 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=106.1
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLR 572 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 572 (932)
.++.+++++|.++.+|.... ++|++|++++| .+..+|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 36677777787777776543 67888888887 6667775 46778888888888877776 66778888887
Q ss_pred cccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcH
Q 036714 573 WCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETV 652 (932)
Q Consensus 573 ~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 652 (932)
+|. ++.+|. .+.+|++|++++|.++.+|.. +++|++|++++|.+..+|. .+++|+.|+++.+ .+....
T Consensus 110 ~N~-l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N-~l~~l~- 177 (622)
T 3g06_A 110 SNP-LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNN-QLTSLP- 177 (622)
T ss_dssp SCC-CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCC-
T ss_pred CCc-CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCC-CCCCCc-
Confidence 753 555665 567788888888888777764 4778888888887777764 2456777777732 332222
Q ss_pred HHHHHHHhccceeEEEecChh
Q 036714 653 EEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 653 ~~l~~l~~~L~~L~l~~~~~~ 673 (932)
..+ ++|+.|+++.|.+.
T Consensus 178 ---~~~-~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 178 ---MLP-SGLQELSVSDNQLA 194 (622)
T ss_dssp ---CCC-TTCCEEECCSSCCS
T ss_pred ---ccC-CCCcEEECCCCCCC
Confidence 223 66777777766544
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=2.2e-18 Score=196.15 Aligned_cols=296 Identities=19% Similarity=0.197 Sum_probs=194.9
Q ss_pred cccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc
Q 036714 479 LRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS 558 (932)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 558 (932)
..+..+|. ....++.+++++|.+..++.. .++|++|++++| .+..+|. |+++++|++|++++|.++.+|.
T Consensus 101 n~l~~lp~---~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~ 170 (454)
T 1jl5_A 101 NSLTELPE---LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNNSLKKLPD 170 (454)
T ss_dssp SCCSSCCC---CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSCCCC
T ss_pred CcCCcccc---ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCCcc--cCCCCCCCEEECCCCcCcccCC
Confidence 34455553 246799999999999887542 268999999999 7777883 6999999999999999999886
Q ss_pred cccccccccccccccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcce
Q 036714 559 SVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYK 638 (932)
Q Consensus 559 ~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~ 638 (932)
.+ .+|++|++++|. ++.+|.++++++|++|++++|.+..+|... ++|++|++++|.+..+|. ++.+++|++
T Consensus 171 ~~---~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~--~~~l~~L~~ 241 (454)
T 1jl5_A 171 LP---PSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE--LQNLPFLTT 241 (454)
T ss_dssp CC---TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCE
T ss_pred Cc---ccccEEECcCCc-CCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc--cCCCCCCCE
Confidence 54 589999999974 667889999999999999999999887643 589999999999998884 789999999
Q ss_pred EEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeec
Q 036714 639 LKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDC 718 (932)
Q Consensus 639 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 718 (932)
|+++.+ .+.... . .. .+|+.|+++.|.+..++... ..++.+.+..+
T Consensus 242 L~l~~N-~l~~l~-~---~~-~~L~~L~l~~N~l~~l~~~~----------------------------~~L~~L~ls~N 287 (454)
T 1jl5_A 242 IYADNN-LLKTLP-D---LP-PSLEALNVRDNYLTDLPELP----------------------------QSLTFLDVSEN 287 (454)
T ss_dssp EECCSS-CCSSCC-S---CC-TTCCEEECCSSCCSCCCCCC----------------------------TTCCEEECCSS
T ss_pred EECCCC-cCCccc-c---cc-cccCEEECCCCcccccCccc----------------------------CcCCEEECcCC
Confidence 999953 333221 1 23 78999999988765533211 22445555555
Q ss_pred ccccccCcccCCcccceeeEeccCCccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccc
Q 036714 719 KICEREETIVLPEDVQFLQMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVE 798 (932)
Q Consensus 719 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~ 798 (932)
.+.+.. ..+++|+.|+++++. +..+...+++|+.|++++|. ++.+|. .+++|+.|++++| .++.++.
T Consensus 288 ~l~~l~---~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~-l~~lp~-----~~~~L~~L~L~~N-~l~~lp~-- 354 (454)
T 1jl5_A 288 IFSGLS---ELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNK-LIELPA-----LPPRLERLIASFN-HLAEVPE-- 354 (454)
T ss_dssp CCSEES---CCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSCCCC--
T ss_pred ccCccc---CcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCc-cccccc-----cCCcCCEEECCCC-ccccccc--
Confidence 544322 234677777777664 22333444578888887764 444443 2467888888775 4554431
Q ss_pred cchhhhhhhccccccccccCccceeeccCCcccc--cccCCCCcc-----------cCCCccEEEecccCCCc
Q 036714 799 DEETEKELATNTIINIVTLPRLKKFYLWGLREFK--SFCSNNGVL-----------VCNSLQEIEVHRCPKLK 858 (932)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~--~i~~~~~~~-----------~~p~L~~L~i~~C~~L~ 858 (932)
.+++|++|+++++.-.. .++...+.. .+++|+.|++++++ ++
T Consensus 355 -----------------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~ 409 (454)
T 1jl5_A 355 -----------------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LR 409 (454)
T ss_dssp -----------------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred -----------------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CC
Confidence 35778888887764222 233211111 12678888888764 44
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=3.7e-18 Score=186.72 Aligned_cols=150 Identities=18% Similarity=0.233 Sum_probs=115.6
Q ss_pred CceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-cccccccccccccccccccCCCC-ChhccccCcEeec
Q 036714 517 ILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDL 594 (932)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l 594 (932)
++++++++++ .+..+|..+ .+.|++|++++|.++.+|. .+..+++|++|++++|......| .+.++++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7888998887 777888654 3678999999999987765 68889999999999876544446 6889999999999
Q ss_pred ccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCch-hhhcHHHHHHHHhccceeEEEecChh
Q 036714 595 EETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEA-LRETVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 595 ~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
++|.++.+|..+. ++|++|++++|.+..++...+.++++|++|+++.+... .......+..+ ++|+.|+++.|.+.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCC
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCccc
Confidence 9999988887765 78999999999988888776788999999998843221 12333455666 77777777665543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=189.70 Aligned_cols=189 Identities=21% Similarity=0.220 Sum_probs=112.4
Q ss_pred cccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc
Q 036714 479 LRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS 558 (932)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 558 (932)
..++.+|.. ....++++++++|.++.++...+.++++|++|++++| .+..++...|.++++|++|++++|.++.+|.
T Consensus 41 ~~l~~iP~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 41 GSLNSIPSG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TTCSSCCTT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred CCccccccc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 344555542 3345666777776666666655666677777777666 5555555445666677777777776666665
Q ss_pred c-ccccccccccccccccccCCCCC---hhccccCcEeecccC-CCcccc-cccccCCCCCEEeCCCCCCcccCCCccCC
Q 036714 559 S-VSDLMNLRSLLLRWCENLERVPS---LAKLLALQYLDLEET-GIEEVP-EGMEMLENLSHLYLSSPRLKKFPTGILPR 632 (932)
Q Consensus 559 ~-i~~l~~L~~L~L~~~~~l~~lp~---~~~l~~L~~L~l~~~-~i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~~ 632 (932)
. +..+++|++|++++|. ++.+|. +.++++|++|++++| .+..++ ..+..+++|++|++++|.+..+++..++.
T Consensus 118 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 4 5666677777776653 344442 666667777777666 455553 35566666777777666666554444566
Q ss_pred CCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChh
Q 036714 633 LRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
+++|++|+++.+ .........+..+ ++|+.|+++.|.+.
T Consensus 197 l~~L~~L~l~~n-~l~~~~~~~~~~~-~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 197 IQNVSHLILHMK-QHILLLEIFVDVT-SSVECLELRDTDLD 235 (353)
T ss_dssp CSEEEEEEEECS-CSTTHHHHHHHHT-TTEEEEEEESCBCT
T ss_pred cccCCeecCCCC-ccccchhhhhhhc-ccccEEECCCCccc
Confidence 666777766632 2322222233344 66666666655443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=188.48 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=107.0
Q ss_pred eecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-Ccccccccccccccccccc
Q 036714 497 VSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLRWCE 575 (932)
Q Consensus 497 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 575 (932)
.+.+++.++.+|.... ++|++|++++| .+..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 36 c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 4556666777665443 46777777777 56666665567777777777777777755 3456677777777777654
Q ss_pred ccCCCC-C-hhccccCcEeecccCCCccccc--ccccCCCCCEEeCCCCC-CcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 576 NLERVP-S-LAKLLALQYLDLEETGIEEVPE--GMEMLENLSHLYLSSPR-LKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 576 ~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
++.+| . ++++++|++|++++|.+..+|. .+..+++|++|++++|. +..++...++++++|++|+++.+ .....
T Consensus 112 -l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 189 (353)
T 2z80_A 112 -LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSY 189 (353)
T ss_dssp -CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEE
T ss_pred -CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCcc
Confidence 44555 3 6677777777777777777665 56667777777777763 66665555666777777777632 23333
Q ss_pred cHHHHHHHHhccceeEEEecCh
Q 036714 651 TVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 651 ~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
.+..+..+ ++|+.|+++.|.+
T Consensus 190 ~~~~l~~l-~~L~~L~l~~n~l 210 (353)
T 2z80_A 190 EPKSLKSI-QNVSHLILHMKQH 210 (353)
T ss_dssp CTTTTTTC-SEEEEEEEECSCS
T ss_pred CHHHHhcc-ccCCeecCCCCcc
Confidence 33444455 5566666555543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.2e-18 Score=188.49 Aligned_cols=142 Identities=22% Similarity=0.287 Sum_probs=92.0
Q ss_pred eeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc---Cccccccccccccccc
Q 036714 496 RVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL---PSSVSDLMNLRSLLLR 572 (932)
Q Consensus 496 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l---p~~i~~l~~L~~L~L~ 572 (932)
.++..++.++.+|.... ++|+.|++++| .+..+|..+|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~---~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP---SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCC---TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCC---CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45555666666665432 46777777777 56667766667777777777777776644 4555566777777777
Q ss_pred cccccCCCC-ChhccccCcEeecccCCCccccc--ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 573 WCENLERVP-SLAKLLALQYLDLEETGIEEVPE--GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 573 ~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
+|. +..+| .+..+++|++|++++|.+..++. .+..+++|++|++++|.+...+...+..+++|++|+++
T Consensus 87 ~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 87 FNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp SCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 654 34455 56667777777777776666653 56667777777777777666555556666666666666
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=2.6e-17 Score=197.38 Aligned_cols=143 Identities=24% Similarity=0.308 Sum_probs=121.4
Q ss_pred eeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-cccccccccccccccc
Q 036714 496 RVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRWC 574 (932)
Q Consensus 496 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~ 574 (932)
..+-++.+++.+|...- +++++|++++| .+..+|...|.++++|++|+|++|.++.+|. .+.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~~vP~~lp---~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP---FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSSCCSSSC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCccCCCCC---cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 34455557888876542 47999999999 8999998878999999999999999998865 5889999999999997
Q ss_pred cccCCCC--ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccC-CCccCCCCCcceEEeec
Q 036714 575 ENLERVP--SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFP-TGILPRLRNLYKLKLSF 643 (932)
Q Consensus 575 ~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p-~~~l~~l~~L~~L~l~~ 643 (932)
. ++.+| .|.++++|++|++++|.++.+|. .++.+++|++|++++|.+..++ +..++.+++|++|+++.
T Consensus 111 ~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 111 P-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp C-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred c-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 5 66666 48999999999999999999976 4799999999999999987653 23468899999999984
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=6.3e-18 Score=193.32 Aligned_cols=241 Identities=22% Similarity=0.238 Sum_probs=158.5
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-ccccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLLLR 572 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~ 572 (932)
...++..++.+..+|.... ++++.|++++| .+..++...|.++++|++|+|++|.+..++ ..+..+++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP---SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC---TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCC---CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456666677777766443 57788888887 666666666678888888888888877654 567778888888888
Q ss_pred cccccCCCC--ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCC-CcccCCCccCCCCCcceEEeecCCchh
Q 036714 573 WCENLERVP--SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPR-LKKFPTGILPRLRNLYKLKLSFGNEAL 648 (932)
Q Consensus 573 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~~~ 648 (932)
+|. ++.+| .+.++++|++|++++|.+..+|. .+..+++|++|++++|+ +..++.+.+.++++|+.|+++.+ .+.
T Consensus 132 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~ 209 (452)
T 3zyi_A 132 DNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIK 209 (452)
T ss_dssp SSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCS
T ss_pred CCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccc
Confidence 754 45555 37778888888888887777765 46777888888887744 66777666777777777777733 221
Q ss_pred hhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCccc
Q 036714 649 RETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIV 728 (932)
Q Consensus 649 ~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 728 (932)
.. ..+..+ .+|+.|+++.|.+..+
T Consensus 210 ~~--~~~~~l-~~L~~L~Ls~N~l~~~----------------------------------------------------- 233 (452)
T 3zyi_A 210 DM--PNLTPL-VGLEELEMSGNHFPEI----------------------------------------------------- 233 (452)
T ss_dssp SC--CCCTTC-TTCCEEECTTSCCSEE-----------------------------------------------------
T ss_pred cc--cccccc-ccccEEECcCCcCccc-----------------------------------------------------
Confidence 11 123333 4444444443322110
Q ss_pred CCcccceeeEeccCCccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhc
Q 036714 729 LPEDVQFLQMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELAT 808 (932)
Q Consensus 729 ~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 808 (932)
.+..+..+ ++|+.|+|++|. ++.+++ ..+..+++|+.|+|+++ .++.++...
T Consensus 234 ~~~~~~~l---------------~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~---------- 285 (452)
T 3zyi_A 234 RPGSFHGL---------------SSLKKLWVMNSQ-VSLIER-NAFDGLASLVELNLAHN-NLSSLPHDL---------- 285 (452)
T ss_dssp CGGGGTTC---------------TTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCSCCCTTS----------
T ss_pred CcccccCc---------------cCCCEEEeCCCc-CceECH-HHhcCCCCCCEEECCCC-cCCccChHH----------
Confidence 11122222 788899998874 454433 45677889999999885 566665432
Q ss_pred cccccccccCccceeeccCCc
Q 036714 809 NTIINIVTLPRLKKFYLWGLR 829 (932)
Q Consensus 809 ~~~~~~~~~p~L~~L~L~~~~ 829 (932)
+..+++|+.|+|++++
T Consensus 286 -----~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 286 -----FTPLRYLVELHLHHNP 301 (452)
T ss_dssp -----STTCTTCCEEECCSSC
T ss_pred -----hccccCCCEEEccCCC
Confidence 4578899999998875
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=2.7e-18 Score=183.58 Aligned_cols=144 Identities=24% Similarity=0.335 Sum_probs=95.1
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-Ccccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLRW 573 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 573 (932)
+.++...+.++.+|... .++|+.|++++| .+..++...|..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555566666665432 356777777776 56666655556777777777777777655 55666777777777777
Q ss_pred ccccCCC-C-ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 574 CENLERV-P-SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 574 ~~~l~~l-p-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
|..++.+ | .+..+++|++|++++|.+..+ |..+..+++|++|++++|.+..++...++.+++|++|+++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 6545555 3 467777777777777777665 3446667777777777777776666656667777777766
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=8.8e-18 Score=192.12 Aligned_cols=188 Identities=29% Similarity=0.307 Sum_probs=159.0
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..+..+|.. ...+++.|++++|.+..+++..+.++++|+.|++++| .+..++...|.++++|++|+|++|.++.+
T Consensus 62 ~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 62 TRRGLSEVPQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp CSSCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCCCcCccCCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCcc
Confidence 34456777754 4578999999999999998888899999999999999 78888877789999999999999999988
Q ss_pred Ccc-ccccccccccccccccccCCCC--ChhccccCcEeecccC-CCccccc-ccccCCCCCEEeCCCCCCcccCCCccC
Q 036714 557 PSS-VSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEET-GIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILP 631 (932)
Q Consensus 557 p~~-i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~ 631 (932)
|.. +..+++|++|+|++|. ++.+| .+.++++|++|++++| .+..+|. .+..+++|++|++++|.+..+|. +.
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~ 215 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LT 215 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CT
T ss_pred ChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--cc
Confidence 765 7889999999999976 55555 5999999999999995 7777766 47899999999999999999875 68
Q ss_pred CCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecCh
Q 036714 632 RLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 632 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
.+++|++|+++. +.+....+..+..+ ++|+.|+++.|.+
T Consensus 216 ~l~~L~~L~Ls~-N~l~~~~~~~~~~l-~~L~~L~L~~n~l 254 (452)
T 3zyi_A 216 PLVGLEELEMSG-NHFPEIRPGSFHGL-SSLKKLWVMNSQV 254 (452)
T ss_dssp TCTTCCEEECTT-SCCSEECGGGGTTC-TTCCEEECTTSCC
T ss_pred ccccccEEECcC-CcCcccCcccccCc-cCCCEEEeCCCcC
Confidence 999999999994 45555656677778 8888888876654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=8.9e-18 Score=191.38 Aligned_cols=186 Identities=28% Similarity=0.305 Sum_probs=135.6
Q ss_pred ccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC
Q 036714 478 GLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP 557 (932)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 557 (932)
+..+..+|.. ...+++.+++++|.+..++...+.++++|++|++++| .+..++...|.++++|++|+|++|.++.+|
T Consensus 52 ~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 52 RKNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp SCCCSSCCSC--CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred CCCcCcCCCC--CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeC
Confidence 3455666653 4567888888888888887777788888888888888 677777666788888888888888888776
Q ss_pred c-cccccccccccccccccccCCCC--ChhccccCcEeecccC-CCccccc-ccccCCCCCEEeCCCCCCcccCCCccCC
Q 036714 558 S-SVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEET-GIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPR 632 (932)
Q Consensus 558 ~-~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~ 632 (932)
. .+..+++|++|+|++|. ++.+| .+.++++|++|++++| .+..+|. .+..+++|++|++++|.+..+|. +..
T Consensus 129 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~ 205 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTP 205 (440)
T ss_dssp TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTT
T ss_pred HhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCC
Confidence 5 47778888888888765 44444 4788888888888875 6666655 46778888888888888887775 577
Q ss_pred CCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecC
Q 036714 633 LRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFST 671 (932)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~ 671 (932)
+++|++|+++. +.+....+..+..+ .+|+.|+++.|.
T Consensus 206 l~~L~~L~Ls~-N~l~~~~~~~~~~l-~~L~~L~L~~n~ 242 (440)
T 3zyj_A 206 LIKLDELDLSG-NHLSAIRPGSFQGL-MHLQKLWMIQSQ 242 (440)
T ss_dssp CSSCCEEECTT-SCCCEECTTTTTTC-TTCCEEECTTCC
T ss_pred CcccCEEECCC-CccCccChhhhccC-ccCCEEECCCCc
Confidence 88888888873 34444444555556 666666665443
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=3.8e-18 Score=182.38 Aligned_cols=190 Identities=28% Similarity=0.363 Sum_probs=153.7
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCC-Ccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTN-IKV 555 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~ 555 (932)
.+..+..+|.. ....++++++++|.+..++...+..+++|++|++++| .+..++...|..+++|++|++++|. +..
T Consensus 19 ~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 19 PQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp CSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred CcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence 34456667653 4678999999999999998888899999999999999 7777766667999999999999997 887
Q ss_pred c-CccccccccccccccccccccCCCC-ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCC
Q 036714 556 L-PSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPR 632 (932)
Q Consensus 556 l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~ 632 (932)
+ |..+..+++|++|++++|......| .+.++++|++|++++|.+..+|.. +..+++|++|++++|.+..+|...+..
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence 7 6778999999999999976544445 699999999999999999988765 789999999999999999999877889
Q ss_pred CCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecC
Q 036714 633 LRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFST 671 (932)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~ 671 (932)
+++|++|+++.+ .+....+..+..+ ++|+.|+++.|.
T Consensus 176 l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n~ 212 (285)
T 1ozn_A 176 LHSLDRLLLHQN-RVAHVHPHAFRDL-GRLMTLYLFANN 212 (285)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTC-TTCCEEECCSSC
T ss_pred ccccCEEECCCC-cccccCHhHccCc-ccccEeeCCCCc
Confidence 999999999843 3333333444445 555555555443
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=9.8e-18 Score=191.01 Aligned_cols=241 Identities=22% Similarity=0.276 Sum_probs=165.3
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-ccccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLLLR 572 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~ 572 (932)
...++..++.++.+|.... ++++.|++++| .+..++...|.++++|++|+|++|.+..++ ..+..+++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS---TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC---TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC---CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456677777888876543 57888888888 677777666788888888888888888665 567778888888888
Q ss_pred cccccCCCC--ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCC-CcccCCCccCCCCCcceEEeecCCchh
Q 036714 573 WCENLERVP--SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPR-LKKFPTGILPRLRNLYKLKLSFGNEAL 648 (932)
Q Consensus 573 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~~~ 648 (932)
+|. ++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|+ +..++.+.+.++++|++|+++.+ .+.
T Consensus 121 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~ 198 (440)
T 3zyj_A 121 DNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLR 198 (440)
T ss_dssp SSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCS
T ss_pred CCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCc
Confidence 864 55555 47888888888888888887765 56778888888888744 67777766778888888888733 221
Q ss_pred hhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCccc
Q 036714 649 RETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIV 728 (932)
Q Consensus 649 ~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 728 (932)
.. ..+..+ .+|+.|+++.|.+.. .
T Consensus 199 ~~--~~~~~l-~~L~~L~Ls~N~l~~-----------------------------------------------------~ 222 (440)
T 3zyj_A 199 EI--PNLTPL-IKLDELDLSGNHLSA-----------------------------------------------------I 222 (440)
T ss_dssp SC--CCCTTC-SSCCEEECTTSCCCE-----------------------------------------------------E
T ss_pred cc--cccCCC-cccCEEECCCCccCc-----------------------------------------------------c
Confidence 11 123333 444444444332211 0
Q ss_pred CCcccceeeEeccCCccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhc
Q 036714 729 LPEDVQFLQMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELAT 808 (932)
Q Consensus 729 ~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 808 (932)
.+..+..+ ++|+.|+|++|. ++.+++ ..+..+++|+.|+|+++ .++.++...
T Consensus 223 ~~~~~~~l---------------~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~---------- 274 (440)
T 3zyj_A 223 RPGSFQGL---------------MHLQKLWMIQSQ-IQVIER-NAFDNLQSLVEINLAHN-NLTLLPHDL---------- 274 (440)
T ss_dssp CTTTTTTC---------------TTCCEEECTTCC-CCEECT-TSSTTCTTCCEEECTTS-CCCCCCTTT----------
T ss_pred ChhhhccC---------------ccCCEEECCCCc-eeEECh-hhhcCCCCCCEEECCCC-CCCccChhH----------
Confidence 11122222 788899998874 555433 45678889999999884 566665432
Q ss_pred cccccccccCccceeeccCCc
Q 036714 809 NTIINIVTLPRLKKFYLWGLR 829 (932)
Q Consensus 809 ~~~~~~~~~p~L~~L~L~~~~ 829 (932)
+..+++|+.|+|+++|
T Consensus 275 -----~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 275 -----FTPLHHLERIHLHHNP 290 (440)
T ss_dssp -----TSSCTTCCEEECCSSC
T ss_pred -----hccccCCCEEEcCCCC
Confidence 5578899999998876
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=3.4e-19 Score=193.46 Aligned_cols=168 Identities=17% Similarity=0.130 Sum_probs=128.6
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWC 574 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (932)
...+++.+.+...+...+..+++|+.|++++| .+..++...|..+++|++|++++|.+...+. +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 34455556666555555667789999999999 7888887777999999999999999987665 889999999999987
Q ss_pred cccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHH
Q 036714 575 ENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEE 654 (932)
Q Consensus 575 ~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 654 (932)
. ++.+| ..++|++|++++|.+..++.. .+++|++|++++|.+..++...++.+++|++|+++. +.+....+..
T Consensus 91 ~-l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~ 163 (317)
T 3o53_A 91 Y-VQELL---VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAE 163 (317)
T ss_dssp E-EEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGG
T ss_pred c-ccccc---CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC-CCCCcccHHH
Confidence 5 44443 448899999999999988654 478899999999999888776678899999999984 3444444444
Q ss_pred H-HHHHhccceeEEEecCh
Q 036714 655 A-ARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 655 l-~~l~~~L~~L~l~~~~~ 672 (932)
+ ..+ ++|+.|+++.|.+
T Consensus 164 ~~~~l-~~L~~L~L~~N~l 181 (317)
T 3o53_A 164 LAASS-DTLEHLNLQYNFI 181 (317)
T ss_dssp GGGGT-TTCCEEECTTSCC
T ss_pred Hhhcc-CcCCEEECCCCcC
Confidence 4 245 7788887776654
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=9.6e-17 Score=188.24 Aligned_cols=248 Identities=20% Similarity=0.203 Sum_probs=179.1
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..+..+|.. ...+++.|++++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.++.+
T Consensus 48 s~n~L~~lp~~--l~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~l 116 (622)
T 3g06_A 48 GESGLTTLPDC--LPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLTHL 116 (622)
T ss_dssp CSSCCSCCCSC--CCTTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSCCCCCC
T ss_pred cCCCcCccChh--hCCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCCcCCCC
Confidence 34455666654 23689999999999998876 5689999999999 7888886 679999999999999999
Q ss_pred CccccccccccccccccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCc
Q 036714 557 PSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNL 636 (932)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L 636 (932)
|. .+.+|++|++++|. ++.+|. .+++|++|++++|.++.+|.. +.+|+.|++++|.+..+| ..+++|
T Consensus 117 ~~---~l~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~----~~~~~L 183 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP----MLPSGL 183 (622)
T ss_dssp CC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC----CCCTTC
T ss_pred CC---CCCCcCEEECCCCC-CCcCCC--CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc----ccCCCC
Confidence 87 67899999999865 677774 248999999999999998864 568999999999999988 357899
Q ss_pred ceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEe
Q 036714 637 YKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLI 716 (932)
Q Consensus 637 ~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 716 (932)
+.|+++.+ .+..... .+ .+|+.|+++.|.+..++
T Consensus 184 ~~L~Ls~N-~l~~l~~----~~-~~L~~L~L~~N~l~~l~---------------------------------------- 217 (622)
T 3g06_A 184 QELSVSDN-QLASLPT----LP-SELYKLWAYNNRLTSLP---------------------------------------- 217 (622)
T ss_dssp CEEECCSS-CCSCCCC----CC-TTCCEEECCSSCCSSCC----------------------------------------
T ss_pred cEEECCCC-CCCCCCC----cc-chhhEEECcCCcccccC----------------------------------------
Confidence 99999943 3332211 23 67888888766544321
Q ss_pred ecccccccCcccCCcccceeeEeccCCccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccc
Q 036714 717 DCKICEREETIVLPEDVQFLQMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVA 796 (932)
Q Consensus 717 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~ 796 (932)
..+++|+.|++++|. +..++..+++|+.|+|++| .++.+|. .+++|+.|++++| .++.++.
T Consensus 218 -----------~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 218 -----------ALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp -----------CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCG
T ss_pred -----------CCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCH
Confidence 112455666665552 2223344467777777776 4555544 3467777777775 4555542
Q ss_pred cccchhhhhhhccccccccccCccceeeccCCc
Q 036714 797 VEDEETEKELATNTIINIVTLPRLKKFYLWGLR 829 (932)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 829 (932)
. +..+++|+.|+|++++
T Consensus 279 ~----------------l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 279 S----------------LIHLSSETTVNLEGNP 295 (622)
T ss_dssp G----------------GGGSCTTCEEECCSCC
T ss_pred H----------------HhhccccCEEEecCCC
Confidence 1 5567777888877765
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=4.1e-17 Score=176.29 Aligned_cols=187 Identities=21% Similarity=0.204 Sum_probs=145.6
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCC---ChhhhccCCceeEEEccCCCC
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTI---PECFFVYMHGLKVLNLSRTNI 553 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~L~~~~~ 553 (932)
.+..++.+|.. ...+++++++++|.++.++...+.++++|++|++++| .+..+ +..+ ..+++|++|++++|.+
T Consensus 15 ~~~~l~~ip~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 15 NSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYLDLSFNGV 90 (306)
T ss_dssp CSSCCSSCCSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEEECCSCSE
T ss_pred CCCCcccCCCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCccccc-ccccccCEEECCCCcc
Confidence 34456677763 4568999999999999999888899999999999999 56544 4444 5799999999999999
Q ss_pred cccCccccccccccccccccccccCCCC--ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcc--cCCC
Q 036714 554 KVLPSSVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKK--FPTG 628 (932)
Q Consensus 554 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~--~p~~ 628 (932)
..+|..+..+++|++|++++|......+ .+..+++|++|++++|.+... |..+..+++|++|++++|.+.. +|..
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 9999999999999999999976443333 589999999999999998855 5567889999999999999875 4544
Q ss_pred ccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEec
Q 036714 629 ILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFS 670 (932)
Q Consensus 629 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 670 (932)
+..+++|++|+++.+ .+....+..+..+ ++|+.|+++.|
T Consensus 171 -~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~L~~N 209 (306)
T 2z66_A 171 -FTELRNLTFLDLSQC-QLEQLSPTAFNSL-SSLQVLNMSHN 209 (306)
T ss_dssp -CTTCTTCCEEECTTS-CCCEECTTTTTTC-TTCCEEECTTS
T ss_pred -HhhCcCCCEEECCCC-CcCCcCHHHhcCC-CCCCEEECCCC
Confidence 789999999999833 3333333334444 55555555443
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.5e-16 Score=168.31 Aligned_cols=190 Identities=26% Similarity=0.415 Sum_probs=157.5
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..+..+|.. .+..+++|++++|.+..++...+..+++|++|++++| .+..++..+|..+++|++|++++|.+..+
T Consensus 24 ~~~~l~~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 24 SSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp TTSCCSSCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred cCCCCCccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcC
Confidence 34456666653 3467999999999999998888889999999999998 78889988889999999999999999988
Q ss_pred Ccc-ccccccccccccccccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCC
Q 036714 557 PSS-VSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPR 632 (932)
Q Consensus 557 p~~-i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~ 632 (932)
|.. +..+++|++|++++|. ++.+| .+..+++|++|++++|.+..+|.. +..+++|++|++++|.+..++...+.+
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 179 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence 754 5789999999999865 45554 489999999999999999988765 688999999999999999998887889
Q ss_pred CCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecCh
Q 036714 633 LRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
+++|++|+++. +.+.......+..+ ++|+.|+++.|.+
T Consensus 180 l~~L~~L~L~~-N~l~~~~~~~~~~l-~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 180 LTELKTLKLDN-NQLKRVPEGAFDSL-EKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCS-SCCSCCCTTTTTTC-TTCCEEECCSSCB
T ss_pred CCCcCEEECCC-CcCCcCCHHHhccc-cCCCEEEecCCCe
Confidence 99999999984 34544444456677 8899999987754
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=4.2e-18 Score=184.85 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=113.1
Q ss_pred CceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-ccccccccccccccccccccCCCCChhccccCcEeecc
Q 036714 517 ILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLE 595 (932)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~ 595 (932)
.+..++++.+ .+...+..++..+++|++|++++|.++.++ ..+..+++|++|+|++|.. ...+.+..+++|++|+++
T Consensus 11 ~l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEEETTCTTCCEEECC
T ss_pred ceeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-CcchhhhhcCCCCEEECc
Confidence 3455556655 566666677788889999999999999776 5789999999999999764 444458999999999999
Q ss_pred cCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChh
Q 036714 596 ETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 596 ~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
+|.++.+|. +++|++|++++|.+..++.. .+++|++|+++. +.+.......+..+ ++|+.|+++.|.+.
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~-N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLAN-NKITMLRDLDEGCR-SRVQYLDLKLNEID 157 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCS-SCCCSGGGBCTGGG-SSEEEEECTTSCCC
T ss_pred CCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCC-CCCCCccchhhhcc-CCCCEEECCCCCCC
Confidence 999888764 38999999999999888754 478899999984 34444444455666 78888888766543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.3e-17 Score=191.69 Aligned_cols=150 Identities=19% Similarity=0.144 Sum_probs=112.0
Q ss_pred CCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCCChhccccCcEe
Q 036714 513 PHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYL 592 (932)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 592 (932)
..+++|++|++++| .+..++...|..+++|++|+|++|.++..++ ++.+++|++|+|++|. ++.+| ..++|++|
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE---ECTTCCEE
T ss_pred ccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC---CCCCcCEE
Confidence 35568899999988 6777776667889999999999998886665 8888999999998864 44444 33788999
Q ss_pred ecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHH-HHHhccceeEEEecC
Q 036714 593 DLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAA-RLSDRLDTFEGIFST 671 (932)
Q Consensus 593 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~~L~~L~l~~~~ 671 (932)
++++|.+..+|.. .+++|+.|++++|.+..+++..++.+++|++|+++. +.+....+..+. .+ ++|+.|+++.|.
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l-~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASS-DTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGT-TTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhC-CcccEEecCCCc
Confidence 9999988887653 468899999999988877665578888888888883 344444444443 45 677777776554
Q ss_pred h
Q 036714 672 L 672 (932)
Q Consensus 672 ~ 672 (932)
+
T Consensus 181 l 181 (487)
T 3oja_A 181 I 181 (487)
T ss_dssp C
T ss_pred c
Confidence 3
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=2.5e-17 Score=178.34 Aligned_cols=153 Identities=20% Similarity=0.176 Sum_probs=105.6
Q ss_pred CCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCc--ccCcccc-------ccccccccccccccccCCCC-Ch
Q 036714 514 HCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIK--VLPSSVS-------DLMNLRSLLLRWCENLERVP-SL 583 (932)
Q Consensus 514 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~lp~~i~-------~l~~L~~L~L~~~~~l~~lp-~~ 583 (932)
..++|+.|++++| .+ .+|..+... |++|++++|.+. .+|..+. .+++|++|+|++|.....+| .+
T Consensus 41 ~~~~L~~l~l~~n-~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVD-TE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCC-TT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccc-cc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4456777777777 45 777766433 788888888775 4565554 68888888888877655677 44
Q ss_pred --hccccCcEeecccCCCcccccccccC-----CCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhh-cHHHH
Q 036714 584 --AKLLALQYLDLEETGIEEVPEGMEML-----ENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRE-TVEEA 655 (932)
Q Consensus 584 --~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l 655 (932)
..+++|++|++++|.+..+|..+..+ ++|++|++++|.+..+++..++++++|++|+++.+.-.... .+..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 78888888888888888777777666 88888888888888888666788888888888843211111 12222
Q ss_pred --HHHHhccceeEEEecCh
Q 036714 656 --ARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 656 --~~l~~~L~~L~l~~~~~ 672 (932)
..+ ++|+.|+++.|.+
T Consensus 196 ~~~~l-~~L~~L~L~~N~l 213 (312)
T 1wwl_A 196 CPLKF-PTLQVLALRNAGM 213 (312)
T ss_dssp CTTSC-TTCCEEECTTSCC
T ss_pred HhccC-CCCCEEECCCCcC
Confidence 344 5555555554443
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=2.6e-18 Score=197.50 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=90.4
Q ss_pred cceeEEEEeecccccc-----cCcccCCcccceeeEeccCCcc----cccc----ccCCccEEEEecCCCCcccc---cc
Q 036714 708 EVHKSIFLIDCKICER-----EETIVLPEDVQFLQMFEVSDVA----SLND----FSHDLKVLRFDSCKNLKNLF---SL 771 (932)
Q Consensus 708 ~~l~~l~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~----~l~~----~~~~L~~L~L~~c~~l~~l~---~~ 771 (932)
..++.+.+..+.+... ...+..+++|+.|+++++..-. .+.. ..++|++|++++|. ++... ..
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 334 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS 334 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH
Confidence 4566777777666542 2233346788889888875211 1111 12589999999986 34321 11
Q ss_pred cccccCCCccEEEEeeccccccccccccchhhhhhhcccccccc-ccCccceeeccCCcccc-----cccCCCCcccCCC
Q 036714 772 RLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIV-TLPRLKKFYLWGLREFK-----SFCSNNGVLVCNS 845 (932)
Q Consensus 772 ~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~p~L~~L~L~~~~~L~-----~i~~~~~~~~~p~ 845 (932)
..+..+++|+.|++++| .+.+..... .. .. +. ..++|++|++++|. ++ .++. ....+++
T Consensus 335 ~~l~~~~~L~~L~Ls~n-~i~~~~~~~-------l~-~~---l~~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~~~~~ 399 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNN-RLEDAGVRE-------LC-QG---LGQPGSVLRVLWLADCD-VSDSSCSSLAA--TLLANHS 399 (461)
T ss_dssp HHHHHCSSCCEEECCSS-BCHHHHHHH-------HH-HH---HTSTTCCCCEEECTTSC-CCHHHHHHHHH--HHHHCCC
T ss_pred HHHhhCCCccEEEccCC-ccccccHHH-------HH-HH---HcCCCCceEEEECCCCC-CChhhHHHHHH--HHHhCCC
Confidence 23556789999999886 444332110 00 00 11 26799999999984 44 3333 3345789
Q ss_pred ccEEEecccCCCccccCCCcccCCCCCCCCCCcceEecchhhhh
Q 036714 846 LQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVIKMEKELWE 889 (932)
Q Consensus 846 L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l~~~~~~~~ 889 (932)
|++|++++|+ ++... ...+....+...++|+.+.+.+..+.
T Consensus 400 L~~L~l~~N~-i~~~~--~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 400 LRELDLSNNC-LGDAG--ILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCEEECCSSS-CCHHH--HHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred ccEEECCCCC-CCHHH--HHHHHHHhccCCcchhheeecccccC
Confidence 9999999883 54321 11111000112335777766554443
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=9.3e-16 Score=162.20 Aligned_cols=173 Identities=26% Similarity=0.399 Sum_probs=141.5
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccc-ccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSV-SDLMNLRSLLL 571 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~L 571 (932)
..+.++++++.++.+|.... ++++.|++++| .+..++...|.++++|++|++++|.++.+|..+ ..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 45789999999998886543 68999999999 788888777799999999999999999888765 77999999999
Q ss_pred ccccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchh
Q 036714 572 RWCENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEAL 648 (932)
Q Consensus 572 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 648 (932)
++|. ++.+| .+.++++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.+.++.+++|++|+++. +.+.
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~ 170 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLK 170 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCS
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCc
Confidence 9965 55565 479999999999999999988654 68899999999999999999988889999999999984 3344
Q ss_pred hhcHHHHHHHHhccceeEEEecCh
Q 036714 649 RETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 649 ~~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
......+..+ ++|+.|+++.|.+
T Consensus 171 ~~~~~~~~~l-~~L~~L~L~~N~l 193 (270)
T 2o6q_A 171 RVPEGAFDKL-TELKTLKLDNNQL 193 (270)
T ss_dssp CCCTTTTTTC-TTCCEEECCSSCC
T ss_pred EeChhHhccC-CCcCEEECCCCcC
Confidence 4443445556 6777777765543
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=3.1e-16 Score=162.66 Aligned_cols=133 Identities=26% Similarity=0.367 Sum_probs=93.7
Q ss_pred ccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCC-CcccCc-cccccccccccccccccccCCCC
Q 036714 504 IEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTN-IKVLPS-SVSDLMNLRSLLLRWCENLERVP 581 (932)
Q Consensus 504 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp 581 (932)
++.+|. ++ ++|+.|++++| .+..+|...|.++++|++|++++|. ++.+|. .+..+++|++|++++|+.++.+|
T Consensus 23 l~~ip~--~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 555555 21 36777777777 6777776666777788888888775 776664 56677778888887745555555
Q ss_pred --ChhccccCcEeecccCCCcccccccccCCCCC---EEeCCCC-CCcccCCCccCCCCCcc-eEEee
Q 036714 582 --SLAKLLALQYLDLEETGIEEVPEGMEMLENLS---HLYLSSP-RLKKFPTGILPRLRNLY-KLKLS 642 (932)
Q Consensus 582 --~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~---~L~l~~~-~l~~~p~~~l~~l~~L~-~L~l~ 642 (932)
.+.++++|++|++++|.++.+|. +..+++|+ +|++++| .+..+|.+.+.++++|+ +|+++
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 47777778888888777777776 66677776 7777777 67777766666677776 66665
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=2.8e-16 Score=186.62 Aligned_cols=326 Identities=14% Similarity=0.054 Sum_probs=194.6
Q ss_pred cccceeecccccccccCC----CcCCCCCCceEEEeecCCCccCCC----hhhhccCCceeEEEccCCCCcccCcccccc
Q 036714 492 ANLERVSLMMNDIEEIPS----YMSPHCDILSTLLLQANGNLWTIP----ECFFVYMHGLKVLNLSRTNIKVLPSSVSDL 563 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l 563 (932)
+++++|++.+|.+..... .....+++|++|++++| .+..+. ..++.++++|++|++++|.+..+|..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 457777777776543311 12235677888888777 343222 123456778888888887777777777778
Q ss_pred cccccccccccccc---CCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccC-CCccCCCCCcce
Q 036714 564 MNLRSLLLRWCENL---ERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFP-TGILPRLRNLYK 638 (932)
Q Consensus 564 ~~L~~L~L~~~~~l---~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p-~~~l~~l~~L~~ 638 (932)
++|++|+++++... ...+ .+..+++|+.|+++++....+|..+..+++|++|++++|.+.... ..++.++++|++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 88888887753332 1222 466777888888877666677777777888888888887754221 122467888888
Q ss_pred EEeecCCchhhhcHHHHHHHHhccceeEEEe-----------cChhhhhhhhcccCCCCcceEEEEecccccCCceeecc
Q 036714 639 LKLSFGNEALRETVEEAARLSDRLDTFEGIF-----------STLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDL 707 (932)
Q Consensus 639 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 707 (932)
|+++ +......+..+..-+++|+.|++.. +.+......... ...
T Consensus 323 L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~-----------------------~~~ 377 (592)
T 3ogk_B 323 LETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA-----------------------QGC 377 (592)
T ss_dssp EEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH-----------------------HHC
T ss_pred Eecc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH-----------------------hhC
Confidence 8887 3444444444433227788888872 232221100000 112
Q ss_pred cceeEEEEeecccccccC-cc-cCCcccceeeEec---cCCcccc---------ccccCCccEEEEecCCC-Cccccccc
Q 036714 708 EVHKSIFLIDCKICEREE-TI-VLPEDVQFLQMFE---VSDVASL---------NDFSHDLKVLRFDSCKN-LKNLFSLR 772 (932)
Q Consensus 708 ~~l~~l~l~~~~~~~~~~-~~-~~~~~L~~L~l~~---~~~~~~l---------~~~~~~L~~L~L~~c~~-l~~l~~~~ 772 (932)
+.++.+.+....+.+... .+ ..+++|+.|++++ |..+... ...+++|+.|+++.|.+ +++.....
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 345555554433332111 11 2266888998885 3344432 22348999999988764 34322222
Q ss_pred ccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEec
Q 036714 773 LLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVH 852 (932)
Q Consensus 773 ~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~ 852 (932)
....+++|+.|++++|. +++..... . +.++++|++|+|++|+ ++..........+|+|+.|+++
T Consensus 458 ~~~~~~~L~~L~L~~n~-l~~~~~~~-----------~---~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVG-ESDEGLME-----------F---SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp HHHSCTTCCEEEECSCC-SSHHHHHH-----------H---HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEE
T ss_pred HHHhCccceEeeccCCC-CCHHHHHH-----------H---HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECc
Confidence 23357899999999864 33211000 0 3478999999999997 5432111123457899999999
Q ss_pred ccCCCccc
Q 036714 853 RCPKLKRL 860 (932)
Q Consensus 853 ~C~~L~~l 860 (932)
+|+ ++..
T Consensus 522 ~n~-it~~ 528 (592)
T 3ogk_B 522 GYR-ASMT 528 (592)
T ss_dssp SCB-CCTT
T ss_pred CCc-CCHH
Confidence 997 5543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=3.7e-16 Score=165.97 Aligned_cols=134 Identities=24% Similarity=0.266 Sum_probs=62.7
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-ccccccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLL 570 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~ 570 (932)
.+++++++++|.+..++...+.++++|++|++++| .+..++...|.++++|++|++++|.+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 34555555555555544444444555555555554 444444433444555555555555544333 3344455555555
Q ss_pred cccccccCCCC-ChhccccCcEeecccCCCcc--cccccccCCCCCEEeCCCCCCcccC
Q 036714 571 LRWCENLERVP-SLAKLLALQYLDLEETGIEE--VPEGMEMLENLSHLYLSSPRLKKFP 626 (932)
Q Consensus 571 L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~~p 626 (932)
+++|......+ .++++++|++|++++|.+.. +|..+..+++|++|++++|.+..++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 55433222222 34445555555555554443 3444444455555555544444433
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=1.6e-15 Score=161.10 Aligned_cols=161 Identities=23% Similarity=0.253 Sum_probs=123.3
Q ss_pred eecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-ccccccccccccccccc
Q 036714 497 VSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRWCE 575 (932)
Q Consensus 497 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~ 575 (932)
+...+..+..+|.... ++|++|++++| .+..++...|.++++|++|++++|.+..++. .+..+++|++|++++|.
T Consensus 12 ~~c~~~~l~~ip~~l~---~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP---FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCSSCCSSSC---TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCccccCCCCC---CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3444555666766432 57999999999 7877877667899999999999999987765 67889999999999976
Q ss_pred ccCCCC-ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccC-CCccCCCCCcceEEeecCCchhhhcH
Q 036714 576 NLERVP-SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFP-TGILPRLRNLYKLKLSFGNEALRETV 652 (932)
Q Consensus 576 ~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p-~~~l~~l~~L~~L~l~~~~~~~~~~~ 652 (932)
.....+ .+.++++|++|++++|.+..++. .+..+++|++|++++|.+..++ +..++++++|++|+++. +.+.....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCH
Confidence 544444 68999999999999999888765 6889999999999999987743 33378899999999984 34444444
Q ss_pred HHHHHHHhccc
Q 036714 653 EEAARLSDRLD 663 (932)
Q Consensus 653 ~~l~~l~~~L~ 663 (932)
..+..+ .+|+
T Consensus 167 ~~~~~l-~~L~ 176 (276)
T 2z62_A 167 TDLRVL-HQMP 176 (276)
T ss_dssp GGGHHH-HTCT
T ss_pred HHhhhh-hhcc
Confidence 445555 5555
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=1.2e-14 Score=160.26 Aligned_cols=293 Identities=14% Similarity=0.116 Sum_probs=172.1
Q ss_pred cCCcccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc------CHH
Q 036714 130 TLTMATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL------YLI 203 (932)
Q Consensus 130 ~~~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~------~~~ 203 (932)
+..+..++|| ++++++|.+++..+ +++.|+|++|+|||||++++++.. + .+|+++.... +..
T Consensus 8 ~~~~~~~~gR--~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 8 KTRREDIFDR--EEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITRE 75 (350)
T ss_dssp CCSGGGSCSC--HHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHH
T ss_pred CCChHhcCCh--HHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHH
Confidence 3445789999 77888888888654 799999999999999999999763 1 6777765432 555
Q ss_pred HHHHHHHHHHhc-----------------cccc-cchHHHHHHHHHHHHhcCCeEEEEEeccccccc---------cccc
Q 036714 204 KLQTEIATALKQ-----------------SLLE-NEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR---------LEEV 256 (932)
Q Consensus 204 ~~~~~i~~~l~~-----------------~~~~-~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l 256 (932)
.+...+.+.+.. .... ..........+.......++++|||||++.... +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 666666665432 0000 011112222222222112389999999976432 1212
Q ss_pred cCCCCCCCCCcEEEEEeCCccc-cc----------cc-c-ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHH
Q 036714 257 GIPEPSEENGCKLVVTTRSVGI-CR----------SM-G-CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLV 323 (932)
Q Consensus 257 ~~~~~~~~~gs~iivTTR~~~v-~~----------~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i 323 (932)
..... ...+.++|+|++...+ .. .. . ...+++.+|+.+|+.+++.+.+...... ...+.+..|
T Consensus 156 ~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i 231 (350)
T 2qen_A 156 AYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEA 231 (350)
T ss_dssp HHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHH
T ss_pred HHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHH
Confidence 11111 1246789999886432 11 01 1 1238999999999999998865432211 124578899
Q ss_pred HHHcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccC---CchhhHHHHHHhhcCCCC
Q 036714 324 VEECAGLPLAIVTVAGCMRGVDEIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRL---KHEKVQQCFLYCALYPED 400 (932)
Q Consensus 324 ~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~~k~cfl~~a~fp~~ 400 (932)
++.++|+|+++..++..+....+...+ ...+.. .+...+.-.+..+ + +..+..+..+|. +
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~~----------~~~~~~~~~l~~l~~~~-~~~~~~l~~la~---g 294 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTLE----------VAKGLIMGELEELRRRS-PRYVDILRAIAL---G 294 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHHH----------HHHHHHHHHHHHHHHHC-HHHHHHHHHHHT---T
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHH---HHHHHH----------HHHHHHHHHHHHHHhCC-hhHHHHHHHHHh---C
Confidence 999999999999988764321122211 111111 1111111111222 5 678899999987 2
Q ss_pred cccChHHHHHHHHHhCCcccchhhhhHHhHHHHHHHHHHHcccccccCCCCEEEeCchhHHHHH
Q 036714 401 FAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAKDGRCVKMHDLIRDMAL 464 (932)
Q Consensus 401 ~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~mHdlv~d~a~ 464 (932)
.++...+.....+.. - . ........+++.|++.+++...+ +.+...|.+++++.+
T Consensus 295 -~~~~~~l~~~~~~~~-~-~-----~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 -YNRWSLIRDYLAVKG-T-K-----IPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp -CCSHHHHHHHHHHTT-C-C-----CCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHh-C-C-----CCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 244455544332211 0 0 11245678899999999998753 334445778887754
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=1.3e-15 Score=162.65 Aligned_cols=173 Identities=27% Similarity=0.307 Sum_probs=134.3
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLL 571 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L 571 (932)
.+++.+++.++.++.+|.... ++++.|++++| .+..++...|..+++|++|+|++|.++.+|.. +.+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCCcCCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 357788888888888876553 67889999988 67777666678899999999999998887764 78889999999
Q ss_pred ccccccCCCC-ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhh
Q 036714 572 RWCENLERVP-SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALR 649 (932)
Q Consensus 572 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 649 (932)
++|. ++.+| .+..+++|++|++++|.++.+|. .+..+++|++|++++|.+..+|.+++..+++|+.|+++. +.+..
T Consensus 85 s~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~ 162 (290)
T 1p9a_G 85 SHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTE 162 (290)
T ss_dssp CSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSC
T ss_pred CCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCc
Confidence 9854 66777 68889999999999998888864 578889999999999998888888888888999998883 33433
Q ss_pred hcHHHHHHHHhccceeEEEecCh
Q 036714 650 ETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 650 ~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
.....+..+ ++|+.|+++.|.+
T Consensus 163 l~~~~~~~l-~~L~~L~L~~N~l 184 (290)
T 1p9a_G 163 LPAGLLNGL-ENLDTLLLQENSL 184 (290)
T ss_dssp CCTTTTTTC-TTCCEEECCSSCC
T ss_pred cCHHHhcCc-CCCCEEECCCCcC
Confidence 333334455 6666666665543
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=2.3e-15 Score=156.12 Aligned_cols=157 Identities=16% Similarity=0.237 Sum_probs=137.5
Q ss_pred cccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccC-CCCcccCc-
Q 036714 481 LQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSR-TNIKVLPS- 558 (932)
Q Consensus 481 l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~lp~- 558 (932)
++.+|. ....++.+++++|.++.++...+..+++|++|++++|..+..++...|.++++|++|++++ |.++.+|.
T Consensus 23 l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 666775 4568999999999999999888899999999999999448888887789999999999998 99998874
Q ss_pred cccccccccccccccccccCCCCChhccccCc---EeecccC-CCcccccc-cccCCCCC-EEeCCCCCCcccCCCccCC
Q 036714 559 SVSDLMNLRSLLLRWCENLERVPSLAKLLALQ---YLDLEET-GIEEVPEG-MEMLENLS-HLYLSSPRLKKFPTGILPR 632 (932)
Q Consensus 559 ~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~~~l~~~p~~~l~~ 632 (932)
.+..+++|++|++++|. ++.+|.+..+.+|+ +|++++| .+..+|.. +..+++|+ +|++++|.+..+|...+..
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 67899999999999965 66688888888888 9999999 99998765 78899999 9999999999999876555
Q ss_pred CCCcceEEee
Q 036714 633 LRNLYKLKLS 642 (932)
Q Consensus 633 l~~L~~L~l~ 642 (932)
++|++|+++
T Consensus 179 -~~L~~L~L~ 187 (239)
T 2xwt_C 179 -TKLDAVYLN 187 (239)
T ss_dssp -CEEEEEECT
T ss_pred -CCCCEEEcC
Confidence 788888887
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=2.1e-17 Score=189.82 Aligned_cols=349 Identities=15% Similarity=0.133 Sum_probs=208.1
Q ss_pred cccceeecccccccccCCC-cCCCCCCceEEEeecCCCccC-----CChhhhccCCceeEEEccCCCCcc-cCccc-ccc
Q 036714 492 ANLERVSLMMNDIEEIPSY-MSPHCDILSTLLLQANGNLWT-----IPECFFVYMHGLKVLNLSRTNIKV-LPSSV-SDL 563 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~~~~-lp~~i-~~l 563 (932)
..+++++++++.+...+.. .+..+++|++|++++| .+.. ++. .+..+++|++|++++|.+.. .+..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 3577888888877654322 2456788888998888 4442 232 34677889999998888764 22222 234
Q ss_pred c----cccccccccccccC----CCC-ChhccccCcEeecccCCCccc-cccc-----ccCCCCCEEeCCCCCCcccC--
Q 036714 564 M----NLRSLLLRWCENLE----RVP-SLAKLLALQYLDLEETGIEEV-PEGM-----EMLENLSHLYLSSPRLKKFP-- 626 (932)
Q Consensus 564 ~----~L~~L~L~~~~~l~----~lp-~~~~l~~L~~L~l~~~~i~~l-p~~~-----~~l~~L~~L~l~~~~l~~~p-- 626 (932)
. +|++|+|++|..-. .+| .+.++++|++|++++|.+... +..+ ...++|++|++++|.+....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 68888888876332 345 577888888999888877632 2222 23557888888888866432
Q ss_pred --CCccCCCCCcceEEeecCCchhhhcHHHHHHHH----hccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccC
Q 036714 627 --TGILPRLRNLYKLKLSFGNEALRETVEEAARLS----DRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMG 700 (932)
Q Consensus 627 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 700 (932)
...+..+++|++|+++.+ ......+..+.... ++|+.|+++.|.+.........
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~------------------- 220 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC------------------- 220 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH-------------------
T ss_pred HHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH-------------------
Confidence 122466788888888843 35554444444310 4888888887766542100000
Q ss_pred CceeecccceeEEEEeeccccccc-----C-cccCCcccceeeEeccCCccc----ccc---ccCCccEEEEecCCCCcc
Q 036714 701 GFLITDLEVHKSIFLIDCKICERE-----E-TIVLPEDVQFLQMFEVSDVAS----LND---FSHDLKVLRFDSCKNLKN 767 (932)
Q Consensus 701 ~~~~~~~~~l~~l~l~~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~----l~~---~~~~L~~L~L~~c~~l~~ 767 (932)
......+.++.+.+..+.+.... . ....++.|+.|++++|.--.. +.. .+++|++|++++|. +++
T Consensus 221 -~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~ 298 (461)
T 1z7x_W 221 -GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGD 298 (461)
T ss_dssp -HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHH
T ss_pred -HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-Cch
Confidence 00111234556666666554321 1 122467899999999852211 222 24899999999984 443
Q ss_pred ccccc----ccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCC---Cc
Q 036714 768 LFSLR----LLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNN---GV 840 (932)
Q Consensus 768 l~~~~----~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~---~~ 840 (932)
..... .....++|+.|++++|. ++...... . .. .+..+++|++|+++++ .+....... ..
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~-------l-~~---~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCS-FTAACCSH-------F-SS---VLAQNRFLLELQISNN-RLEDAGVRELCQGL 365 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH-------H-HH---HHHHCSSCCEEECCSS-BCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCccceeeEcCCCC-CchHHHHH-------H-HH---HHhhCCCccEEEccCC-ccccccHHHHHHHH
Confidence 21111 11123699999999875 33321100 0 00 0456799999999998 455432100 00
Q ss_pred -ccCCCccEEEecccCCCc-----cccCCCcccCCCCCCCCCCcceEecchh
Q 036714 841 -LVCNSLQEIEVHRCPKLK-----RLSLSLPLLDNGQPSPPPTLEVIKMEKE 886 (932)
Q Consensus 841 -~~~p~L~~L~i~~C~~L~-----~lp~~l~~l~~~~~~~~~~L~~l~~~~~ 886 (932)
...++|++|++++| +++ .+|..+.. +++|+.+++..+
T Consensus 366 ~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~--------~~~L~~L~l~~N 408 (461)
T 1z7x_W 366 GQPGSVLRVLWLADC-DVSDSSCSSLAATLLA--------NHSLRELDLSNN 408 (461)
T ss_dssp TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHH--------CCCCCEEECCSS
T ss_pred cCCCCceEEEECCCC-CCChhhHHHHHHHHHh--------CCCccEEECCCC
Confidence 12579999999998 566 56654433 457888866543
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2.1e-15 Score=162.68 Aligned_cols=121 Identities=29% Similarity=0.376 Sum_probs=75.0
Q ss_pred CCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCCChhccccCcEee
Q 036714 514 HCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLD 593 (932)
Q Consensus 514 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 593 (932)
.+++|+.|++++| .+..++. +..+++|++|++++|.+..+|. +..+++|++|++++|. ++.+|.+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEE
Confidence 3455666666666 5555542 3566666666666666666655 6666666666666644 45555666666666666
Q ss_pred cccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 594 LEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 594 l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
+++|.+..+|. +..+++|++|++++|.+..++. ++.+++|+.|+++
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG 159 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc
Confidence 66666666653 6666666666666666665554 4566666666665
No 81
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=2.6e-14 Score=157.88 Aligned_cols=292 Identities=14% Similarity=0.142 Sum_probs=168.9
Q ss_pred CCcccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-----cCHHHH
Q 036714 131 LTMATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-----LYLIKL 205 (932)
Q Consensus 131 ~~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~ 205 (932)
..+..++|| +++++.|.+ +.. +++.|+|++|+|||||++++++... . ..+|+++... .+...+
T Consensus 10 ~~~~~~~gR--~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 10 DNRKDFFDR--EKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN---L---PYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp CSGGGSCCC--HHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT---C---CEEEEEGGGGTTCSCCCHHHH
T ss_pred CCHHHhcCh--HHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC---C---CEEEEEchhhccccCCCHHHH
Confidence 344789999 778899988 765 7999999999999999999998752 1 2578877642 344555
Q ss_pred HHHHHHHHhc------------------cccc---cch----HHHHHHHHHHHHhc-C-CeEEEEEecccccc-----cc
Q 036714 206 QTEIATALKQ------------------SLLE---NED----KVRRAGELLGMLKA-K-EKFVLILDDMWEAF-----RL 253 (932)
Q Consensus 206 ~~~i~~~l~~------------------~~~~---~~~----~~~~~~~l~~~l~~-~-kr~LlVlDdv~~~~-----~~ 253 (932)
...+.+.+.. .... ... .......+...+.+ . ++++|||||++... ++
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhH
Confidence 5555544421 0000 000 00112223333322 1 48999999997632 22
Q ss_pred ccccCCCCCCCCCcEEEEEeCCccccc----------cc-cc--eeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHH
Q 036714 254 EEVGIPEPSEENGCKLVVTTRSVGICR----------SM-GC--KEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKII 320 (932)
Q Consensus 254 ~~l~~~~~~~~~gs~iivTTR~~~v~~----------~~-~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 320 (932)
..+...+.....+.++|+|++...... .. +. ..+++.+|+.+|+.+++.+.+..... .... .
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~----~ 232 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKD----Y 232 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCC----H
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCc----H
Confidence 111111111123678999998754211 11 11 23999999999999999886532111 0111 1
Q ss_pred HHHHHHcCCCcHHHHHHHhhhcCCCchHHHHH-HHHHHhcccccCCCCchhHHhHhH-hhh--ccCCchhhHHHHHHhhc
Q 036714 321 NLVVEECAGLPLAIVTVAGCMRGVDEIHEWRN-ALNELRGRVRSLNGVDTEVFGRLE-FSY--HRLKHEKVQQCFLYCAL 396 (932)
Q Consensus 321 ~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~cfl~~a~ 396 (932)
..|++.++|+|+++..++..+....+...|.. ..+... ..+..-+. +.+ ..|+ +..+..+..+|.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l~-~~~~~~l~~la~ 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIAR-KRYLNIMRTLSK 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGGH-HHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhcccccc-HHHHHHHHHHHc
Confidence 78999999999999999877643223323321 111110 01111111 111 1577 678899999988
Q ss_pred CCCCcccChHHHHHHHH-HhCCcccchhhhhHHhHHHHHHHHHHHcccccccCCCCEEEeCchhHHHH
Q 036714 397 YPEDFAIPKDELIDYWI-AEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAKDGRCVKMHDLIRDMA 463 (932)
Q Consensus 397 fp~~~~i~~~~Li~~w~-a~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~mHdlv~d~a 463 (932)
+. +...+....- ..|. .........+++.|++.++|...+ +.+...|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 21 4444432211 1121 011245677899999999998754 34444688888864
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=1.7e-15 Score=161.59 Aligned_cols=187 Identities=22% Similarity=0.182 Sum_probs=156.9
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..++.+|.. ....++.|++++|.+..+++..+..+++|+.|++++| .+..++.. ..+++|++|++++|.+..+
T Consensus 18 ~~~~l~~ip~~--~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~l~~L~~L~Ls~N~l~~l 92 (290)
T 1p9a_G 18 DKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD--GTLPVLGTLDLSHNQLQSL 92 (290)
T ss_dssp TTSCCSSCCSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC--SCCTTCCEEECCSSCCSSC
T ss_pred CCCCCCcCCCC--CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC--CCCCcCCEEECCCCcCCcC
Confidence 34456667654 4568999999999999988878889999999999999 67777653 6899999999999999999
Q ss_pred CccccccccccccccccccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCC
Q 036714 557 PSSVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRL 633 (932)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l 633 (932)
|..+..+++|++|++++|. ++.+| .|.++++|++|++++|.++.+|.. +..+++|+.|++++|.++.+|.+++.++
T Consensus 93 ~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 171 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (290)
T ss_dssp CCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred chhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence 9999999999999999975 55555 599999999999999999998775 4789999999999999999999988999
Q ss_pred CCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecCh
Q 036714 634 RNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 634 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
++|++|+++. +.+. ..+..+... .+|+.|++..|.+
T Consensus 172 ~~L~~L~L~~-N~l~-~ip~~~~~~-~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 172 ENLDTLLLQE-NSLY-TIPKGFFGS-HLLPFAFLHGNPW 207 (290)
T ss_dssp TTCCEEECCS-SCCC-CCCTTTTTT-CCCSEEECCSCCB
T ss_pred CCCCEEECCC-CcCC-ccChhhccc-ccCCeEEeCCCCc
Confidence 9999999994 3333 233445556 7899999987654
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=8.5e-15 Score=152.95 Aligned_cols=162 Identities=26% Similarity=0.369 Sum_probs=119.4
Q ss_pred ccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC
Q 036714 478 GLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP 557 (932)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 557 (932)
+..+..+|.. ....++.+++++|.+..++...+..+++|++|++++| .+..++...|..+++|++|++++|.++.+|
T Consensus 23 ~~~l~~~p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 23 GKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp TCCCSSCCSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCccccCCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccC
Confidence 3445556643 3456778888888887777767777888888888887 666676666677888888888888877666
Q ss_pred c-cccccccccccccccccccCCCC--ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccCCCccCCC
Q 036714 558 S-SVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPRL 633 (932)
Q Consensus 558 ~-~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l 633 (932)
. .+..+++|++|+|++|. ++.+| .+.++++|++|++++|.++.+|. .+..+++|++|++++|.+..++...+..+
T Consensus 100 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 4 45677888888888754 45555 36778888888888888877766 46777888888888888877777667778
Q ss_pred CCcceEEeec
Q 036714 634 RNLYKLKLSF 643 (932)
Q Consensus 634 ~~L~~L~l~~ 643 (932)
++|+.|+++.
T Consensus 179 ~~L~~L~l~~ 188 (251)
T 3m19_A 179 GKLQTITLFG 188 (251)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEEeeC
Confidence 8888888773
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=8.4e-16 Score=182.51 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=81.9
Q ss_pred cCCcccceeeEeccCCcc-----ccccccCCccEEEEec---CCCCcccccc----cccccCCCccEEEEeeccc-cccc
Q 036714 728 VLPEDVQFLQMFEVSDVA-----SLNDFSHDLKVLRFDS---CKNLKNLFSL----RLLPALQNLEVLEVEDCYS-IEEI 794 (932)
Q Consensus 728 ~~~~~L~~L~l~~~~~~~-----~l~~~~~~L~~L~L~~---c~~l~~l~~~----~~l~~L~~L~~L~l~~c~~-l~~~ 794 (932)
..+++|+.|++ +|..+. .+...+++|+.|++++ |+.+++.|.. ..+..+++|+.|++++|.+ +...
T Consensus 375 ~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 375 QGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred hhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 34689999999 444333 2334358999999984 5677764211 1245689999999998764 2221
Q ss_pred cccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCcc--ccCCCcccCCCCC
Q 036714 795 VAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKR--LSLSLPLLDNGQP 872 (932)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~--lp~~l~~l~~~~~ 872 (932)
.... . ...+|+|+.|+|++|. +...........+++|++|++++|+ ++. ++....
T Consensus 454 ~~~~--------~------~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~------- 510 (592)
T 3ogk_B 454 GLSY--------I------GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVT------- 510 (592)
T ss_dssp HHHH--------H------HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHH-------
T ss_pred HHHH--------H------HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHH-------
Confidence 1100 0 2258999999999885 4432111123457899999999998 543 221111
Q ss_pred CCCCCcceEecch
Q 036714 873 SPPPTLEVIKMEK 885 (932)
Q Consensus 873 ~~~~~L~~l~~~~ 885 (932)
.+++|+.+++..
T Consensus 511 -~l~~L~~L~ls~ 522 (592)
T 3ogk_B 511 -KLPSLRYLWVQG 522 (592)
T ss_dssp -HCSSCCEEEEES
T ss_pred -hcCccCeeECcC
Confidence 245677775553
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=2.6e-16 Score=186.97 Aligned_cols=340 Identities=13% Similarity=0.090 Sum_probs=175.6
Q ss_pred ccceeecccccccccCCCcC-CCCCCceEEEeecCCCccCC-ChhhhccCCceeEEEccCCCCcc-----cCcccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMS-PHCDILSTLLLQANGNLWTI-PECFFVYMHGLKVLNLSRTNIKV-----LPSSVSDLMN 565 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~-----lp~~i~~l~~ 565 (932)
.++++++.++.+.......+ ..+++|++|++++|..+... ...++.++++|++|++++|.++. ++.....+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 46666666665443221111 14667777777766333221 12333467777777777776442 2222335567
Q ss_pred ccccccccccccCCCC--C----hhccccCcEeecccC-CCcccccccccCCCCCEEeCCCCC-----------------
Q 036714 566 LRSLLLRWCENLERVP--S----LAKLLALQYLDLEET-GIEEVPEGMEMLENLSHLYLSSPR----------------- 621 (932)
Q Consensus 566 L~~L~L~~~~~l~~lp--~----~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~----------------- 621 (932)
|++|++++|. ..++ . +.++++|++|++++| .+..+|..+..+++|++|++.++.
T Consensus 186 L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 186 LVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 7777777664 1121 1 234567777777766 444555555666666666644331
Q ss_pred --------------CcccCCCccCCCCCcceEEeecCCchhhhcHHH-HHHHHhccceeEEEecChhhhhhhhcccCCCC
Q 036714 622 --------------LKKFPTGILPRLRNLYKLKLSFGNEALRETVEE-AARLSDRLDTFEGIFSTLNDFNLYVKSTDGRG 686 (932)
Q Consensus 622 --------------l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 686 (932)
...++. ++..+++|++|+++++. .....+.. +..+ ++|+.|++..| +..............
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~-~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYAT-VQSYDLVKLLCQC-PKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCC-CCHHHHHHHHTTC-TTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred CCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCC-CCHHHHHHHHhcC-CCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 111111 12356777777777554 43333333 3344 77777777766 221111111112345
Q ss_pred cceEEEEec-------ccccCCce----eecccceeEEEEeecccccccC-c-ccCCcccceeeEe-----ccCCcccc-
Q 036714 687 LKNYCLLLS-------AYWMGGFL----ITDLEVHKSIFLIDCKICEREE-T-IVLPEDVQFLQMF-----EVSDVASL- 747 (932)
Q Consensus 687 L~~~~~~~~-------~~~~~~~~----~~~~~~l~~l~l~~~~~~~~~~-~-~~~~~~L~~L~l~-----~~~~~~~l- 747 (932)
|+.+.+.-. .....+.. ....+.++.+.+....+.+... . ...+++|+.|++. +|..+...
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 555554210 00000000 0123456666554444432211 1 1235678888888 44444421
Q ss_pred --------ccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCc
Q 036714 748 --------NDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPR 819 (932)
Q Consensus 748 --------~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 819 (932)
...+++|+.|+|++ .+++.........+++|+.|++++|. +++..... . ...+|+
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~--------l------~~~~~~ 482 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHH--------V------LSGCDS 482 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHH--------H------HHHCTT
T ss_pred hhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHH--------H------HhcCCC
Confidence 12347888888865 44442221112237788999998875 32221100 0 246899
Q ss_pred cceeeccCCcccccccCCCCcccCCCccEEEecccCC
Q 036714 820 LKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPK 856 (932)
Q Consensus 820 L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~ 856 (932)
|++|+|++|+. ...........+++|+.|++++|+.
T Consensus 483 L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 483 LRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99999999975 4322211334578999999999975
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=4.2e-15 Score=155.26 Aligned_cols=174 Identities=26% Similarity=0.353 Sum_probs=148.6
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-ccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLL 571 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L 571 (932)
..++++++++.++.+|.... ++++.|++++| .+..++...|.++++|++|+|++|.+..++. .+..+++|++|+|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP---ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC---TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC---CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678999999999987654 68999999999 7777877777999999999999999997654 4789999999999
Q ss_pred ccccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchh
Q 036714 572 RWCENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEAL 648 (932)
Q Consensus 572 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 648 (932)
++|. ++.+| .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.+.++.+++|++|+++. +.+.
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 168 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQ 168 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCS
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCC
Confidence 9976 45555 589999999999999999999876 58899999999999999999987789999999999994 4555
Q ss_pred hhcHHHHHHHHhccceeEEEecChh
Q 036714 649 RETVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 649 ~~~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
......+..+ ++|+.|+++.|.+.
T Consensus 169 ~~~~~~~~~l-~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 SVPHGAFDRL-GKLQTITLFGNQFD 192 (251)
T ss_dssp CCCTTTTTTC-TTCCEEECCSCCBC
T ss_pred ccCHHHHhCC-CCCCEEEeeCCcee
Confidence 5555567778 99999999988654
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.8e-15 Score=173.92 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=98.7
Q ss_pred CCceeEEEccCCCCcccC-ccccccccccccccccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCC
Q 036714 540 MHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLS 618 (932)
Q Consensus 540 l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 618 (932)
+++|++|+|++|.+..+| ..++.+++|++|+|++|.. ...+.++.+++|++|++++|.+..+|.. ++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-EEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-CCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 448999999999999765 6789999999999999764 4344589999999999999999888753 899999999
Q ss_pred CCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChh
Q 036714 619 SPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 619 ~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
+|.+..++.. .+++|+.|+++. +.+....+..++.+ ++|+.|+++.|.+.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~-N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLAN-NKITMLRDLDEGCR-SRVQYLDLKLNEID 157 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCS-SCCCSGGGBCGGGG-SSEEEEECTTSCCC
T ss_pred CCcCCCCCcc---ccCCCCEEECCC-CCCCCCCchhhcCC-CCCCEEECCCCCCC
Confidence 9999888754 568899999984 44444444455666 78888888766543
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=1.8e-15 Score=166.51 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=39.5
Q ss_pred CccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcccc
Q 036714 753 DLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFK 832 (932)
Q Consensus 753 ~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~ 832 (932)
+|++|.+.+++.++.++. +.+..+++|+.|+++++ .++.++. ..|.+|+.|.+.++.+++
T Consensus 178 ~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N-~l~~lp~------------------~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPN-DVFHGASGPVILDISRT-RIHSLPS------------------YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp EEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTS-CCCCCCS------------------SSCTTCCEEECTTCTTCC
T ss_pred chhHHhhccCCcccCCCH-HHhccCcccchhhcCCC-CcCccCh------------------hhhccchHhhhccCCCcC
Confidence 455555555555555533 23445556666666552 4554442 135555555555555555
Q ss_pred cccCCCCcccCCCccEEEec
Q 036714 833 SFCSNNGVLVCNSLQEIEVH 852 (932)
Q Consensus 833 ~i~~~~~~~~~p~L~~L~i~ 852 (932)
.++. ...+++|+.+++.
T Consensus 238 ~lP~---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 238 KLPT---LEKLVALMEASLT 254 (350)
T ss_dssp CCCC---TTTCCSCCEEECS
T ss_pred cCCC---chhCcChhhCcCC
Confidence 5543 2234555555553
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=1.8e-16 Score=188.43 Aligned_cols=297 Identities=15% Similarity=0.088 Sum_probs=149.4
Q ss_pred CCCCceEEEeecCCCccCCChhhhccCCceeEEEccCC-CCcc--cCccccccccccccccccccccCC-----CC-Chh
Q 036714 514 HCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRT-NIKV--LPSSVSDLMNLRSLLLRWCENLER-----VP-SLA 584 (932)
Q Consensus 514 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~~~--lp~~i~~l~~L~~L~L~~~~~l~~-----lp-~~~ 584 (932)
.+++|+.|++++|.-....+..+...+++|++|++++| .+.. ++..+..+++|++|+|++|. ++. ++ ...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence 46777888887773222222233235777888888777 3443 44444567778888887766 222 22 123
Q ss_pred ccccCcEeecccCC--Cc--ccccccccCCCCCEEeCCCCC-CcccCCCccCCCCCcceEEeecCCc-h----hhhcHHH
Q 036714 585 KLLALQYLDLEETG--IE--EVPEGMEMLENLSHLYLSSPR-LKKFPTGILPRLRNLYKLKLSFGNE-A----LRETVEE 654 (932)
Q Consensus 585 ~l~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~-~----~~~~~~~ 654 (932)
.+++|++|++++|. +. .++..+..+++|++|++++|. +..++.. +.++++|++|+++.+.. . .......
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHH
Confidence 56678888887775 22 222333456778888887773 4444433 46677777777653321 1 1112234
Q ss_pred HHHHHhcccee-EEEecChhhhhhhhcccCCCCcceEEEEecccccCCc--eeecccceeEEEEeeccccccc-C-cccC
Q 036714 655 AARLSDRLDTF-EGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGF--LITDLEVHKSIFLIDCKICERE-E-TIVL 729 (932)
Q Consensus 655 l~~l~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~-~-~~~~ 729 (932)
+..+ ++|+.| .+.......++.... ...+|+.+.+........+. .....+.++.+.+.++ +.... . ....
T Consensus 261 l~~~-~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 261 LSGC-KELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHTC-TTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HhcC-CCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 5555 667666 222222222221111 12345555443322110000 0123455667777665 22110 0 1123
Q ss_pred CcccceeeEecc--------CCccc-----cccccCCccEEEEecCCCCcccccccccccCCCccEEEEe-----ecccc
Q 036714 730 PEDVQFLQMFEV--------SDVAS-----LNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVE-----DCYSI 791 (932)
Q Consensus 730 ~~~L~~L~l~~~--------~~~~~-----l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~-----~c~~l 791 (932)
+++|+.|++.+| ..+.. +...+++|+.|.+ +|..+++.........+++|+.|+++ +|+.+
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 567777777442 22221 1122477788844 44455543222222357788888888 56666
Q ss_pred ccccccccchhhhhhhccccccccccCccceeeccC
Q 036714 792 EEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWG 827 (932)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 827 (932)
+..+... +-. .. +..+++|+.|+|++
T Consensus 416 ~~~~~~~----~~~---~l---~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 416 TLEPLDI----GFG---AI---VEHCKDLRRLSLSG 441 (594)
T ss_dssp TCCCTHH----HHH---HH---HHHCTTCCEEECCS
T ss_pred cCCchhh----HHH---HH---HhhCCCccEEeecC
Confidence 6443211 000 00 33567777777765
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=7.6e-15 Score=158.23 Aligned_cols=169 Identities=20% Similarity=0.229 Sum_probs=140.5
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
..+++++++.++.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 3468899999999888763 567899999999999 7777776 689999999999999999886 588999999999
Q ss_pred cccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 571 LRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 571 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
+++|. ++.+|.+..+++|++|++++|.+..+|. +..+++|++|++++|.+..++. +..+++|++|+++.+ .....
T Consensus 114 l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~ 188 (308)
T 1h6u_A 114 LTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN-KISDI 188 (308)
T ss_dssp CTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC-ccCcC
Confidence 99965 6677789999999999999999998876 8899999999999999988876 689999999999843 33332
Q ss_pred cHHHHHHHHhccceeEEEecChh
Q 036714 651 TVEEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 651 ~~~~l~~l~~~L~~L~l~~~~~~ 673 (932)
. .+..+ ++|+.|+++.|.+.
T Consensus 189 ~--~l~~l-~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 189 S--PLASL-PNLIEVHLKNNQIS 208 (308)
T ss_dssp G--GGGGC-TTCCEEECTTSCCC
T ss_pred h--hhcCC-CCCCEEEccCCccC
Confidence 2 25666 78888888766543
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=2.3e-14 Score=161.76 Aligned_cols=291 Identities=15% Similarity=0.123 Sum_probs=171.5
Q ss_pred ccccccchHHHHHHHHHHh-c----C--CCeeEEEE--EeCCCChHHHHHHHHHHHHhhcc--CCCc-EEEEEEECCccC
Q 036714 134 ATLAGEKTKKVVEEIWEDL-M----G--DKVTKIGV--WGMGGIGKTTIMKEINNRLQKET--NKFN-VVIWVTVSQPLY 201 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~--~~f~-~~~wv~~s~~~~ 201 (932)
..++|| +++++++..++ . + ...+.+.| +|++|+||||||+++++...... ..++ .++|+.+....+
T Consensus 22 ~~l~gR--~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVR--RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSS--CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCh--HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 679999 66777777776 2 2 24556666 99999999999999998863211 1122 467777767778
Q ss_pred HHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHh-cCCeEEEEEecccccc--------ccccccCCC---CCCC--CC
Q 036714 202 LIKLQTEIATALKQSLLEN-EDKVRRAGELLGMLK-AKEKFVLILDDMWEAF--------RLEEVGIPE---PSEE--NG 266 (932)
Q Consensus 202 ~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--------~~~~l~~~~---~~~~--~g 266 (932)
...++..++.+++...... .+.......+...+. .+++++|||||++... .+..+...+ +..+ ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 8899999999987643211 112222233333332 3679999999998632 222221111 1012 34
Q ss_pred cEEEEEeCCccccc-----------cccceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcC------C
Q 036714 267 CKLVVTTRSVGICR-----------SMGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECA------G 329 (932)
Q Consensus 267 s~iivTTR~~~v~~-----------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~------G 329 (932)
..||+||+...+.. ..... +.+.+++.++++++|...+..... ......+.+..|++.++ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFK-LHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCC
Confidence 45888887654321 12222 899999999999999865421100 01122467888999999 9
Q ss_pred CcHHHHHHHhhh-----c-CC--CchHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCCchhhHHHHHHhhcCC--C
Q 036714 330 LPLAIVTVAGCM-----R-GV--DEIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKVQQCFLYCALYP--E 399 (932)
Q Consensus 330 ~Plai~~~~~~L-----~-~~--~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp--~ 399 (932)
.|..+..+.... . +. -+...+..++..... ...+.-++..|| +..+.++..++.+. .
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~-~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALS-IHELIILRLIAEATLGG 324 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSC-HHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCC-HHHHHHHHHHHHHHhcC
Confidence 997665554321 1 11 112333333322100 123445678899 78888888888653 2
Q ss_pred CcccChHHHHHHHH--H-h--CCcccchhhhhHHhHHHHHHHHHHHccccccc
Q 036714 400 DFAIPKDELIDYWI--A-E--GFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 447 (932)
Q Consensus 400 ~~~i~~~~Li~~w~--a-~--g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 447 (932)
+..++...+...+. + . |. .. ........+++.|++.+++...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNV-KP-----RGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCC-CC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHHHHHHhhcCC-CC-----CCHHHHHHHHHHHHhCCCEEee
Confidence 33566666555442 1 1 11 00 1124566789999999999765
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=1.2e-14 Score=153.83 Aligned_cols=172 Identities=26% Similarity=0.368 Sum_probs=107.9
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc-ccccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS-VSDLMNLRSLL 570 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~ 570 (932)
..++.+.+.++.+..++. +..+++|++|++++| .+..++ .+..+++|++|++++|.++.+|.. +..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 346666666666665543 345677777777776 455443 246677777777777777665543 46677777777
Q ss_pred cccccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCch
Q 036714 571 LRWCENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEA 647 (932)
Q Consensus 571 L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 647 (932)
+++|. ++.+| .++++++|++|++++|.++.+|.. +..+++|++|++++|.+..++...++.+++|++|+++. +.+
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l 193 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQL 193 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCC
T ss_pred CCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC-CcC
Confidence 77654 33443 366777777777777777666544 35667777777777777766666566777777777763 334
Q ss_pred hhhcHHHHHHHHhccceeEEEecC
Q 036714 648 LRETVEEAARLSDRLDTFEGIFST 671 (932)
Q Consensus 648 ~~~~~~~l~~l~~~L~~L~l~~~~ 671 (932)
.......+..+ ++|+.|+++.|.
T Consensus 194 ~~~~~~~~~~l-~~L~~L~l~~N~ 216 (272)
T 3rfs_A 194 KSVPDGVFDRL-TSLQYIWLHDNP 216 (272)
T ss_dssp SCCCTTTTTTC-TTCCEEECCSSC
T ss_pred CccCHHHHhCC-cCCCEEEccCCC
Confidence 34433445555 667777766554
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=2.5e-15 Score=164.70 Aligned_cols=248 Identities=19% Similarity=0.199 Sum_probs=165.0
Q ss_pred CceEEEeecCCCccCCChhhhccC--CceeEEEccCCCCcccCccccccccccccccccccccCC-CC-ChhccccCcEe
Q 036714 517 ILSTLLLQANGNLWTIPECFFVYM--HGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLER-VP-SLAKLLALQYL 592 (932)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~-lp-~~~~l~~L~~L 592 (932)
.++.++++++ .+. ...+..+ +.+++|++++|.+...+..+..+++|++|++++|..... +| .+..+++|++|
T Consensus 48 ~~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3678888877 332 3445666 889999999998887777778899999999998763322 56 57888999999
Q ss_pred ecccCCCc-ccccccccCCCCCEEeCCCC-CCcc--cCCCccCCCCCcceEEeecCCchhhh-cHHHHHHHHh-ccceeE
Q 036714 593 DLEETGIE-EVPEGMEMLENLSHLYLSSP-RLKK--FPTGILPRLRNLYKLKLSFGNEALRE-TVEEAARLSD-RLDTFE 666 (932)
Q Consensus 593 ~l~~~~i~-~lp~~~~~l~~L~~L~l~~~-~l~~--~p~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~-~L~~L~ 666 (932)
++++|.+. ..|..+..+++|++|++++| .++. ++.. +.++++|++|+++++...... ....+..+ + +|+.|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~~L~~L~ 201 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKHVQVAVAHV-SETITQLN 201 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHHHHHHHHHS-CTTCCEEE
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChHHHHHHHHhc-ccCCCEEE
Confidence 99998877 56777888899999999988 4653 4432 577888888888865344443 34456666 6 788887
Q ss_pred EEecCh--hhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCc
Q 036714 667 GIFSTL--NDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDV 744 (932)
Q Consensus 667 l~~~~~--~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 744 (932)
++.|.. ... ..+..+..+
T Consensus 202 l~~~~~~~~~~----------------------------------------------------~l~~~~~~~-------- 221 (336)
T 2ast_B 202 LSGYRKNLQKS----------------------------------------------------DLSTLVRRC-------- 221 (336)
T ss_dssp CCSCGGGSCHH----------------------------------------------------HHHHHHHHC--------
T ss_pred eCCCcccCCHH----------------------------------------------------HHHHHHhhC--------
Confidence 776531 100 001111122
Q ss_pred cccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceee
Q 036714 745 ASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFY 824 (932)
Q Consensus 745 ~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~ 824 (932)
++|+.|++++|..+++.. ...+..+++|+.|++++|..+....... +..+|+|+.|+
T Consensus 222 -------~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~---------------l~~~~~L~~L~ 278 (336)
T 2ast_B 222 -------PNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLE---------------LGEIPTLKTLQ 278 (336)
T ss_dssp -------TTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGG---------------GGGCTTCCEEE
T ss_pred -------CCCCEEeCCCCCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHHHHHH---------------HhcCCCCCEEe
Confidence 789999999987665432 2356678899999999986433221111 55799999999
Q ss_pred ccCCcccccccCCCCcccC-CCccEEEecccCCCccc
Q 036714 825 LWGLREFKSFCSNNGVLVC-NSLQEIEVHRCPKLKRL 860 (932)
Q Consensus 825 L~~~~~L~~i~~~~~~~~~-p~L~~L~i~~C~~L~~l 860 (932)
+++| +..- +...+ .+|+.|+++ |++++..
T Consensus 279 l~~~--i~~~----~~~~l~~~l~~L~l~-~n~l~~~ 308 (336)
T 2ast_B 279 VFGI--VPDG----TLQLLKEALPHLQIN-CSHFTTI 308 (336)
T ss_dssp CTTS--SCTT----CHHHHHHHSTTSEES-CCCSCCT
T ss_pred ccCc--cCHH----HHHHHHhhCcceEEe-cccCccc
Confidence 9998 2221 11111 235556664 5566654
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.2e-14 Score=159.95 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=139.1
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeE-EEccCCCCcc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKV-LNLSRTNIKV 555 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~L~~~~~~~ 555 (932)
.+..++++|.. .+.++++|++++|.++.++...|.++++|++|++++|...+.+|...|.+++.|.. +.+++|.+..
T Consensus 17 ~~~~Lt~iP~~--l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 17 QESKVTEIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp ESTTCCSCCTT--CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred cCCCCCccCcC--cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 44567777764 45678899999999999988888899999999999985456678777788887664 6667788887
Q ss_pred cC-ccccccccccccccccccccCCCC--ChhccccCcEeecccC-CCcccccc-cccC-CCCCEEeCCCCCCcccCCCc
Q 036714 556 LP-SSVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEET-GIEEVPEG-MEML-ENLSHLYLSSPRLKKFPTGI 629 (932)
Q Consensus 556 lp-~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~-~i~~lp~~-~~~l-~~L~~L~l~~~~l~~~p~~~ 629 (932)
+| ..+..+++|++|++++|. ++.+| .+....++..|++.++ .+..+|.. +..+ ..|+.|++++|.++.+|.++
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred cCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 74 557889999999999865 55555 4666777888888764 77777653 3444 46888999999999888875
Q ss_pred cCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecCh
Q 036714 630 LPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 630 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
....+|++|++..++.........+..+ .+|+.|+++.|.+
T Consensus 174 -f~~~~L~~l~l~~~n~l~~i~~~~f~~l-~~L~~LdLs~N~l 214 (350)
T 4ay9_X 174 -FNGTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRI 214 (350)
T ss_dssp -STTEEEEEEECTTCTTCCCCCTTTTTTE-ECCSEEECTTSCC
T ss_pred -ccccchhHHhhccCCcccCCCHHHhccC-cccchhhcCCCCc
Confidence 4566788888875554444444445555 6666666665543
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=3.7e-14 Score=151.37 Aligned_cols=170 Identities=24% Similarity=0.278 Sum_probs=144.4
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
...++.+++.+|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.+|. +..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 4568899999999988854 567899999999999 7777776 6899999999999999998775 88999999999
Q ss_pred cccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 571 LRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 571 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
+++|. ++.++.+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+++ +..+++|++|+++.+ .+...
T Consensus 119 L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i~~l 193 (291)
T 1h6t_A 119 LEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDL 193 (291)
T ss_dssp CTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBC
T ss_pred CCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cCCCC
Confidence 99965 66778899999999999999999988 578899999999999999988876 789999999999944 33332
Q ss_pred cHHHHHHHHhccceeEEEecChhh
Q 036714 651 TVEEAARLSDRLDTFEGIFSTLND 674 (932)
Q Consensus 651 ~~~~l~~l~~~L~~L~l~~~~~~~ 674 (932)
..+..+ ++|+.|+++.|.+..
T Consensus 194 --~~l~~l-~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 --RALAGL-KNLDVLELFSQECLN 214 (291)
T ss_dssp --GGGTTC-TTCSEEEEEEEEEEC
T ss_pred --hhhccC-CCCCEEECcCCcccC
Confidence 347777 899999999886543
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=1.3e-15 Score=164.83 Aligned_cols=196 Identities=17% Similarity=0.081 Sum_probs=99.3
Q ss_pred cCCceeEEEccCCCCc-ccCccc--cccccccccccccccccCCCC-Chhcc-----ccCcEeecccCCCcccc-ccccc
Q 036714 539 YMHGLKVLNLSRTNIK-VLPSSV--SDLMNLRSLLLRWCENLERVP-SLAKL-----LALQYLDLEETGIEEVP-EGMEM 608 (932)
Q Consensus 539 ~l~~L~~L~L~~~~~~-~lp~~i--~~l~~L~~L~L~~~~~l~~lp-~~~~l-----~~L~~L~l~~~~i~~lp-~~~~~ 608 (932)
++++|++|++++|.++ .+|..+ ..+++|++|+|++|. ++..| .++.+ ++|++|++++|.+..+| ..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4556666666666655 455544 556666666666544 33334 45555 56666666666666554 45556
Q ss_pred CCCCCEEeCCCCCCcc---cCCC-ccCCCCCcceEEeecCCchh---hhcHHHHHHHHhccceeEEEecChhhhhhhhcc
Q 036714 609 LENLSHLYLSSPRLKK---FPTG-ILPRLRNLYKLKLSFGNEAL---RETVEEAARLSDRLDTFEGIFSTLNDFNLYVKS 681 (932)
Q Consensus 609 l~~L~~L~l~~~~l~~---~p~~-~l~~l~~L~~L~l~~~~~~~---~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~ 681 (932)
+++|++|++++|.+.. +|.. .++.+++|++|+++.+ .+. ......+..+ ++|+.|+++.|.+......
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~--- 246 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGA--- 246 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCC---
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccch---
Confidence 6666666666665332 1211 1255666666666632 222 1111222344 5666666665544331100
Q ss_pred cCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccC--CccccccccCCccEEEE
Q 036714 682 TDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVS--DVASLNDFSHDLKVLRF 759 (932)
Q Consensus 682 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~l~~~~~~L~~L~L 759 (932)
........++.+.++.+.+......+. ++|+.|+++++. .++.+.. +++|+.|+|
T Consensus 247 --------------------~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~-l~~L~~L~L 303 (312)
T 1wwl_A 247 --------------------PSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDE-LPQVGNLSL 303 (312)
T ss_dssp --------------------SCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTT-SCEEEEEEC
T ss_pred --------------------hhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChhHhh-CCCCCEEec
Confidence 000011234455555555543332222 567777777765 2222222 378899999
Q ss_pred ecCC
Q 036714 760 DSCK 763 (932)
Q Consensus 760 ~~c~ 763 (932)
++++
T Consensus 304 ~~N~ 307 (312)
T 1wwl_A 304 KGNP 307 (312)
T ss_dssp TTCT
T ss_pred cCCC
Confidence 8875
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.1e-13 Score=142.16 Aligned_cols=145 Identities=26% Similarity=0.335 Sum_probs=126.9
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc-ccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS-VSDLMNLRSLLLR 572 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~L~ 572 (932)
.+.++.+++.+..+|.... ++|++|++++| .+..++...|..+++|++|+|++|.+..+|.. +..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3467788888888887543 78999999999 77777666779999999999999999988855 5889999999999
Q ss_pred cccccCCCC--ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 573 WCENLERVP--SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 573 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
+|. ++.+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.+..+|.+.+..+++|+.|+++.
T Consensus 97 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 97 TNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCc-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 975 56666 48999999999999999999999999999999999999999999988889999999999984
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=2.2e-15 Score=165.08 Aligned_cols=171 Identities=16% Similarity=0.098 Sum_probs=114.3
Q ss_pred cceeecccccccccCCCcCCCC--CCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc--cCcccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHC--DILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV--LPSSVSDLMNLRSL 569 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L 569 (932)
.++++++++.+.. ..+..+ ++++.|++.+| .+...+..+ ..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n-~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRS-FMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTC-EECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCCH---HHHHhhhhccceEEEcCCc-cccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3455665554431 122233 67778888777 444444443 467888888888887762 67777788888888
Q ss_pred ccccccccCCCC-ChhccccCcEeecccC-CCc--ccccccccCCCCCEEeCCCC-CCcc--cCCCccCCCC-CcceEEe
Q 036714 570 LLRWCENLERVP-SLAKLLALQYLDLEET-GIE--EVPEGMEMLENLSHLYLSSP-RLKK--FPTGILPRLR-NLYKLKL 641 (932)
Q Consensus 570 ~L~~~~~l~~lp-~~~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~-~l~~--~p~~~l~~l~-~L~~L~l 641 (932)
++++|......| .+.++++|++|++++| .++ .+|..+..+++|++|++++| .+.. ++.. +..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEe
Confidence 888875333445 5777888888888888 676 36766778888888888888 6664 3332 57788 8888888
Q ss_pred ecCC-chh-hhcHHHHHHHHhccceeEEEecC
Q 036714 642 SFGN-EAL-RETVEEAARLSDRLDTFEGIFST 671 (932)
Q Consensus 642 ~~~~-~~~-~~~~~~l~~l~~~L~~L~l~~~~ 671 (932)
+.+. ... ...+..+..+ ++|+.|+++.|.
T Consensus 203 ~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~ 233 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRC-PNLVHLDLSDSV 233 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHC-TTCSEEECTTCT
T ss_pred CCCcccCCHHHHHHHHhhC-CCCCEEeCCCCC
Confidence 8553 233 2233455666 888888887654
No 99
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=1.5e-13 Score=145.29 Aligned_cols=152 Identities=30% Similarity=0.442 Sum_probs=133.8
Q ss_pred ccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc-cccccccc
Q 036714 489 EWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS-VSDLMNLR 567 (932)
Q Consensus 489 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~ 567 (932)
.....++.+++++|.+..++ .+..+++|++|++++| .+..++...|..+++|++|++++|.++.+|.. +..+++|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 34568999999999998874 4678999999999999 78888888789999999999999999987765 68899999
Q ss_pred ccccccccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecC
Q 036714 568 SLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFG 644 (932)
Q Consensus 568 ~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~ 644 (932)
+|++++|. ++.+| .++++++|++|++++|.++.+|.. +..+++|++|++++|.+..+++..++.+++|+.|+++.+
T Consensus 137 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 137 YLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 99999975 55666 379999999999999999988765 588999999999999999999888899999999999843
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.7e-13 Score=139.74 Aligned_cols=144 Identities=26% Similarity=0.398 Sum_probs=124.4
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-Ccccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLRW 573 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 573 (932)
+.++..++.++.+|.... ++|+.|++++| .+..++...|..+++|++|+|++|.+..+ |..+..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 467778888888877543 68999999999 78888877779999999999999999876 77889999999999998
Q ss_pred ccccCCCC--ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 574 CENLERVP--SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 574 ~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
|. ++.+| .|.++++|++|++++|.+..+ |..+..+++|++|++++|.++.++.+.+..+++|+.|+++.
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred Cc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 65 56676 378999999999999999987 45688999999999999999999988789999999999984
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=139.01 Aligned_cols=144 Identities=20% Similarity=0.255 Sum_probs=123.2
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCC-ChhhhccCCceeEEEccCCCCcccCc-cccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTI-PECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLR 572 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~ 572 (932)
+.+++++|.++.+|.... +.++.|++++| .+..+ +..+|..+++|++|+|++|.++.++. .+..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP---QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC---CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 478888999998887543 46789999999 67666 45667899999999999999998765 78999999999999
Q ss_pred cccccCCCC--ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 573 WCENLERVP--SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 573 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
+|.. +.+| .+.++++|++|++++|.+..+ |..+..+++|++|++++|.++.+++..+..+++|+.|+++.
T Consensus 90 ~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 90 SNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp SSCC-CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCcc-CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 9764 5555 499999999999999999987 56788999999999999999999777789999999999984
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.7e-13 Score=137.17 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=116.5
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc-cCcccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV-LPSSVSDLMNLRSL 569 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~L 569 (932)
..+++++++++|.+..++ .+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .|..++.+++|++|
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 346888888888888776 3567889999999988 666554 35788899999999988874 67778889999999
Q ss_pred ccccccccCCCC-ChhccccCcEeecccCC-CcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 570 LLRWCENLERVP-SLAKLLALQYLDLEETG-IEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 570 ~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
++++|......| .++++++|++|++++|. +..+| .+..+++|++|++++|.+..++ . +..+++|++|++++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~-l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-G-IEDFPKLNQLYAFS 190 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-T-GGGCSSCCEEEECB
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-H-hccCCCCCEEEeeC
Confidence 999876544455 68888999999999986 88887 6888889999999998888876 3 68888888888883
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=1e-13 Score=153.05 Aligned_cols=171 Identities=23% Similarity=0.297 Sum_probs=110.0
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhc-cCCceeEEEccCCCCcccC-ccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFV-YMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLLLR 572 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~ 572 (932)
+.++++++.++.+|.... +.++.|++++| .+..++...|. .+++|++|+|++|.++.++ ..+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 356666666666665432 34667777777 66666665555 6777777777777777665 346677777777777
Q ss_pred cccccCCCC--ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcccCCCcc---CCCCCcceEEeecCCc
Q 036714 573 WCENLERVP--SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKKFPTGIL---PRLRNLYKLKLSFGNE 646 (932)
Q Consensus 573 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l---~~l~~L~~L~l~~~~~ 646 (932)
+|. ++.++ .|.++.+|++|++++|.|..+ |..+..+++|++|++++|.+..+|..++ ..+++|+.|+++ .+.
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~-~N~ 174 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS-SNK 174 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC-SSC
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC-CCC
Confidence 754 44444 367777777777777777765 4456677777777777777777776654 457777777777 344
Q ss_pred hhhhcHHHHHHHHhc--cceeEEEecCh
Q 036714 647 ALRETVEEAARLSDR--LDTFEGIFSTL 672 (932)
Q Consensus 647 ~~~~~~~~l~~l~~~--L~~L~l~~~~~ 672 (932)
+.......+..+ .. |+.|++..|.+
T Consensus 175 l~~l~~~~~~~l-~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 175 LKKLPLTDLQKL-PAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCHHHHHHS-CHHHHTTEECCSSCE
T ss_pred CCccCHHHhhhc-cHhhcceEEecCCCc
Confidence 555555556655 54 36677766544
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=1.9e-13 Score=150.97 Aligned_cols=164 Identities=28% Similarity=0.308 Sum_probs=139.9
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCC-CCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSP-HCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV 555 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 555 (932)
.+..+..+|.. ....++.|++++|.++.++...+. .+++|+.|++++| .+..++...|.++++|++|+|++|.++.
T Consensus 26 ~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 26 SKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp CSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCc
Confidence 44567777764 456789999999999999988887 8999999999999 8888887778999999999999999998
Q ss_pred cCc-cccccccccccccccccccCCCC-ChhccccCcEeecccCCCccccccc----ccCCCCCEEeCCCCCCcccCCCc
Q 036714 556 LPS-SVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGM----EMLENLSHLYLSSPRLKKFPTGI 629 (932)
Q Consensus 556 lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~----~~l~~L~~L~l~~~~l~~~p~~~ 629 (932)
+|. .+..+.+|++|+|++|......| .|.++++|++|++++|.+..+|..+ ..+++|++|++++|.+..+|...
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence 765 57889999999999977544445 6999999999999999999998876 57999999999999999998766
Q ss_pred cCCCCC--cceEEeec
Q 036714 630 LPRLRN--LYKLKLSF 643 (932)
Q Consensus 630 l~~l~~--L~~L~l~~ 643 (932)
+..++. |+.|++..
T Consensus 183 ~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHN 198 (361)
T ss_dssp HHHSCHHHHTTEECCS
T ss_pred hhhccHhhcceEEecC
Confidence 777877 48899883
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=1.2e-13 Score=161.70 Aligned_cols=170 Identities=24% Similarity=0.280 Sum_probs=138.3
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
...++.|++.+|.+..++. +..+++|+.|++++| .+..++. +..+++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 3467888888888888763 567899999999998 6777776 688999999999999988877 588899999999
Q ss_pred cccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhh
Q 036714 571 LRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRE 650 (932)
Q Consensus 571 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 650 (932)
|++|. +..++.+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+..+++ +..+++|+.|+++.+ .+...
T Consensus 116 Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~i~~l 190 (605)
T 1m9s_A 116 LEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDL 190 (605)
T ss_dssp CTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBC
T ss_pred ecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-CCCCC
Confidence 99865 56677888999999999999988888 568889999999999999888766 688999999999844 33332
Q ss_pred cHHHHHHHHhccceeEEEecChhh
Q 036714 651 TVEEAARLSDRLDTFEGIFSTLND 674 (932)
Q Consensus 651 ~~~~l~~l~~~L~~L~l~~~~~~~ 674 (932)
..+..+ ++|+.|+++.|.+..
T Consensus 191 --~~l~~l-~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 --RALAGL-KNLDVLELFSQECLN 211 (605)
T ss_dssp --GGGTTC-TTCSEEECCSEEEEC
T ss_pred --hHHccC-CCCCEEEccCCcCcC
Confidence 356777 889999998876654
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=8.4e-14 Score=153.93 Aligned_cols=173 Identities=18% Similarity=0.171 Sum_probs=102.5
Q ss_pred ecccccccccCCCcCCCCCCceEEEeecCCCccCCCh----hhhccCC-ceeEEEccCCCCccc-Ccccccc-----ccc
Q 036714 498 SLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPE----CFFVYMH-GLKVLNLSRTNIKVL-PSSVSDL-----MNL 566 (932)
Q Consensus 498 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~~~~l-p~~i~~l-----~~L 566 (932)
.++.|.++...+......++|+.|++++| .+...+. ..+..++ +|++|+|++|.+... +..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34455555444444444556888888888 5766665 4556777 788888888887744 4445554 778
Q ss_pred cccccccccccCCCC-Chhc----c-ccCcEeecccCCCccccc-c----ccc-CCCCCEEeCCCCCCccc-----CCCc
Q 036714 567 RSLLLRWCENLERVP-SLAK----L-LALQYLDLEETGIEEVPE-G----MEM-LENLSHLYLSSPRLKKF-----PTGI 629 (932)
Q Consensus 567 ~~L~L~~~~~l~~lp-~~~~----l-~~L~~L~l~~~~i~~lp~-~----~~~-l~~L~~L~l~~~~l~~~-----p~~~ 629 (932)
++|+|++|..-...+ .+.. + ++|++|++++|.+...+. . +.. .++|++|++++|.+... +..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~- 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI- 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-
Confidence 888888766333333 3333 3 678888888887775543 1 233 25788888888776632 221
Q ss_pred cCCCC-CcceEEeecCCchhhhcHHHHHH----HHhccceeEEEecChh
Q 036714 630 LPRLR-NLYKLKLSFGNEALRETVEEAAR----LSDRLDTFEGIFSTLN 673 (932)
Q Consensus 630 l~~l~-~L~~L~l~~~~~~~~~~~~~l~~----l~~~L~~L~l~~~~~~ 673 (932)
+..++ +|++|+++. +.+.......+.. .+++|+.|+++.|.+.
T Consensus 162 l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRG-NNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecC-CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 23443 777777773 3444444443332 2125666666655543
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=9.9e-13 Score=132.90 Aligned_cols=145 Identities=26% Similarity=0.395 Sum_probs=116.0
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc-cccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS-VSDLMNLRSLLLRW 573 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~ 573 (932)
+.+...++.+..+|... .++|+.|++++| .+..++...|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 35666667777776543 357888999988 77778877778889999999999988877765 47788999999988
Q ss_pred ccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecC
Q 036714 574 CENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFG 644 (932)
Q Consensus 574 ~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~ 644 (932)
|. ++.+| .+.++++|++|++++|.+..+|.. +..+++|++|++++|.+..++...+..+++|++|+++.+
T Consensus 86 n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 86 NQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred Cc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 65 55555 378899999999999988888765 578899999999999988888877788999999998843
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=7.2e-13 Score=134.96 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=123.7
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..+..+|.. ....++.|++.+|.++.++...+..+++|+.|++++| .+..++...|.++++|++|+|++|.++.+
T Consensus 19 ~~~~l~~iP~~--l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 19 RGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TTSCCSSCCSS--CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCCcCcCCCc--cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 44566777764 4468999999999999999888899999999999999 77777666679999999999999999999
Q ss_pred Ccc-ccccccccccccccccccCCCC-ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCc
Q 036714 557 PSS-VSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLK 623 (932)
Q Consensus 557 p~~-i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~ 623 (932)
|.. +..+++|++|+|++|..-...| .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 876 4789999999999976444445 699999999999999999988764 788999999999999754
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1.1e-12 Score=134.60 Aligned_cols=143 Identities=25% Similarity=0.394 Sum_probs=125.5
Q ss_pred cccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 477 AGLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
.+..+..+|.. ...+++.|++++|.+..+++..+..+++|+.|++++| .+..+|...|..+++|++|+|++|.++.+
T Consensus 27 ~~~~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 27 RSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TTSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCcCccCCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 34456677754 4578999999999999998888889999999999999 78899988889999999999999999988
Q ss_pred Ccc-ccccccccccccccccccCCCC-ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCc
Q 036714 557 PSS-VSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLK 623 (932)
Q Consensus 557 p~~-i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~ 623 (932)
|.. +..+++|++|+|++|. ++.+| .+..+++|++|++++|.+..+|. .+..+++|+.|++++|.+.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 765 5789999999999865 66888 79999999999999999999875 4788999999999999765
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=9.1e-14 Score=145.87 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=118.8
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLR 572 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 572 (932)
.+..+.+..+.++.++ .+..+++|++|++++| .+..++ . +..+++|++|++++|.++.+|. +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4556666777776665 2456778888888887 677776 2 4778888888888888887776 7788888888888
Q ss_pred cccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcH
Q 036714 573 WCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETV 652 (932)
Q Consensus 573 ~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 652 (932)
+|. ++.+|.+.. .+|++|++++|.++.+| .+..+++|++|++++|.++.++. ++.+++|++|+++.+ .+...
T Consensus 94 ~N~-l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~~N-~i~~~-- 165 (263)
T 1xeu_A 94 RNR-LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGN-EITNT-- 165 (263)
T ss_dssp SSC-CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG--GGGCTTCCEEECTTS-CCCBC--
T ss_pred CCc-cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH--HccCCCCCEEECCCC-cCcch--
Confidence 754 566664444 78888888888887775 47778888888888888777762 677888888888743 33332
Q ss_pred HHHHHHHhccceeEEEecChh
Q 036714 653 EEAARLSDRLDTFEGIFSTLN 673 (932)
Q Consensus 653 ~~l~~l~~~L~~L~l~~~~~~ 673 (932)
..+..+ ++|+.|+++.|.+.
T Consensus 166 ~~l~~l-~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRL-KKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTC-CCCCEEEEEEEEEE
T ss_pred HHhccC-CCCCEEeCCCCccc
Confidence 445666 78888888777654
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=2.5e-14 Score=159.87 Aligned_cols=178 Identities=15% Similarity=0.055 Sum_probs=98.0
Q ss_pred cccceeecccccccccCC----CcCCCCCCceEEEeecCCCcc----CCChhh------hccCCceeEEEccCCCCcc--
Q 036714 492 ANLERVSLMMNDIEEIPS----YMSPHCDILSTLLLQANGNLW----TIPECF------FVYMHGLKVLNLSRTNIKV-- 555 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~----~~~~~~------~~~l~~L~~L~L~~~~~~~-- 555 (932)
..+++|++++|.+..... ..+..+++|++|++++| .+. .+|..+ +..+++|++|+|++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 456677777776554311 12445677777777765 222 223332 3566777777777777654
Q ss_pred ---cCccccccccccccccccccccCC----CC-Chhcc---------ccCcEeecccCCCc--ccc---cccccCCCCC
Q 036714 556 ---LPSSVSDLMNLRSLLLRWCENLER----VP-SLAKL---------LALQYLDLEETGIE--EVP---EGMEMLENLS 613 (932)
Q Consensus 556 ---lp~~i~~l~~L~~L~L~~~~~l~~----lp-~~~~l---------~~L~~L~l~~~~i~--~lp---~~~~~l~~L~ 613 (932)
+|..+..+++|++|+|++|..-.. ++ .+..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 566666677777777776653211 12 13333 67777777777664 333 3455666777
Q ss_pred EEeCCCCCCcc-----cCCCccCCCCCcceEEeecCCchhh----hcHHHHHHHHhccceeEEEecCh
Q 036714 614 HLYLSSPRLKK-----FPTGILPRLRNLYKLKLSFGNEALR----ETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 614 ~L~l~~~~l~~-----~p~~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
+|++++|.+.. +.+..+..+++|++|+++.+ .+.. ..+..+..+ ++|+.|+++.|.+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~-~~L~~L~L~~n~i 256 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSW-PNLRELGLNDCLL 256 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGC-TTCCEEECTTCCC
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccC-CCcCEEECCCCCC
Confidence 77777776551 11112466677777777633 2321 122333444 5566665555543
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=3.2e-14 Score=158.99 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=21.8
Q ss_pred hccccCcEeecccCCCcc-----cccccccCCCCCEEeCCCCCCc
Q 036714 584 AKLLALQYLDLEETGIEE-----VPEGMEMLENLSHLYLSSPRLK 623 (932)
Q Consensus 584 ~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~ 623 (932)
..+++|++|++++|.+.. +|..+..+++|++|++++|.+.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 345555555555555543 4445555555666666555543
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=1.7e-12 Score=138.39 Aligned_cols=152 Identities=25% Similarity=0.369 Sum_probs=132.3
Q ss_pred cccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccc
Q 036714 481 LQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSV 560 (932)
Q Consensus 481 l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i 560 (932)
+..++. .....+++.+++++|.+..++. +..+++|+.|++++| .+..++. +..+++|++|++++|.+..++ .+
T Consensus 58 i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~i~~~~-~l 130 (291)
T 1h6t_A 58 IKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNGISDIN-GL 130 (291)
T ss_dssp CCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTSCCCCCG-GG
T ss_pred cccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCCcCCCCh-hh
Confidence 344433 3345689999999999998876 679999999999999 7777665 689999999999999999875 58
Q ss_pred cccccccccccccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEE
Q 036714 561 SDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLK 640 (932)
Q Consensus 561 ~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~ 640 (932)
..+++|++|++++|. ++.++.+.++++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|+
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~ 206 (291)
T 1h6t_A 131 VHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLE 206 (291)
T ss_dssp GGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred cCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hccCCCCCEEE
Confidence 899999999999865 6667889999999999999999999876 8999999999999999999875 78999999999
Q ss_pred eec
Q 036714 641 LSF 643 (932)
Q Consensus 641 l~~ 643 (932)
++.
T Consensus 207 l~~ 209 (291)
T 1h6t_A 207 LFS 209 (291)
T ss_dssp EEE
T ss_pred CcC
Confidence 994
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=3.3e-13 Score=135.07 Aligned_cols=151 Identities=18% Similarity=0.250 Sum_probs=125.4
Q ss_pred CCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-ChhccccCcE
Q 036714 513 PHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQY 591 (932)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~ 591 (932)
..+++|+.|++++| .+..+| . +..+++|++|++++|.++.++ .+..+++|++|++++|..-...| .++++++|++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 46788999999999 777888 3 589999999999999887765 68899999999999976544445 7999999999
Q ss_pred eecccCCCcc-cccccccCCCCCEEeCCCCC-CcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEe
Q 036714 592 LDLEETGIEE-VPEGMEMLENLSHLYLSSPR-LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIF 669 (932)
Q Consensus 592 L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~ 669 (932)
|++++|.+.. .|..+..+++|++|++++|. +..+|. +..+++|++|+++.+ .+.... .+..+ ++|+.|+++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n-~i~~~~--~l~~l-~~L~~L~l~~ 190 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFD-GVHDYR--GIEDF-PKLNQLYAFS 190 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTB-CCCCCT--TGGGC-SSCCEEEECB
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCC-CCcChH--HhccC-CCCCEEEeeC
Confidence 9999999985 67789999999999999998 888873 799999999999954 333322 67778 9999999998
Q ss_pred cChh
Q 036714 670 STLN 673 (932)
Q Consensus 670 ~~~~ 673 (932)
|.+.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 8654
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=133.66 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=122.2
Q ss_pred ccccccCCCccccccccceeecccccccccC-CCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc
Q 036714 478 GLRLQEFPGKQEWKANLERVSLMMNDIEEIP-SYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL 556 (932)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 556 (932)
+..+..+|.. ....++.|++++|.++.++ ...+..+++|++|++++| .+..++...|..+++|++|+|++|.++.+
T Consensus 20 ~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 96 (220)
T 2v70_A 20 NQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENV 96 (220)
T ss_dssp SSCCSSCCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcccCccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCcc
Confidence 4456667753 4556889999999999884 456789999999999999 78888887789999999999999999987
Q ss_pred Ccc-ccccccccccccccccccCCCC-ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCc
Q 036714 557 PSS-VSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLK 623 (932)
Q Consensus 557 p~~-i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~ 623 (932)
|.. +..+++|++|+|++|......| .+.++++|++|++++|.++.+ |..+..+++|+.|++++|.+.
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 654 7889999999999977554446 699999999999999999988 678899999999999999754
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=2.2e-13 Score=159.59 Aligned_cols=168 Identities=20% Similarity=0.328 Sum_probs=137.6
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRW 573 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (932)
+..+.+..+.+..+.. ...+++|+.|++++| .+..++. +..+++|+.|+|++|.+..+|. +..+++|++|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 4445555555555432 346788999999998 7887774 6899999999999999998887 89999999999999
Q ss_pred ccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHH
Q 036714 574 CENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVE 653 (932)
Q Consensus 574 ~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 653 (932)
|. +..+|.+..+++|+.|+|++|.+..+| .+..+++|+.|+|++|.+..++ .+..+++|+.|+++.+ .+....+
T Consensus 97 N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N-~l~~~~~- 170 (605)
T 1m9s_A 97 NK-IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN-QISDIVP- 170 (605)
T ss_dssp SC-CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGGSCTTCSEEECCSS-CCCCCGG-
T ss_pred CC-CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCch--hhcccCCCCEEECcCC-cCCCchh-
Confidence 64 677889999999999999999999885 5889999999999999998884 3799999999999944 4443333
Q ss_pred HHHHHHhccceeEEEecChhhh
Q 036714 654 EAARLSDRLDTFEGIFSTLNDF 675 (932)
Q Consensus 654 ~l~~l~~~L~~L~l~~~~~~~~ 675 (932)
+..+ ++|+.|+++.|.+..+
T Consensus 171 -l~~l-~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 171 -LAGL-TKLQNLYLSKNHISDL 190 (605)
T ss_dssp -GTTC-TTCCEEECCSSCCCBC
T ss_pred -hccC-CCCCEEECcCCCCCCC
Confidence 7777 9999999998876654
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=3.2e-12 Score=129.08 Aligned_cols=154 Identities=24% Similarity=0.355 Sum_probs=128.8
Q ss_pred ccccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC
Q 036714 478 GLRLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP 557 (932)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 557 (932)
+..+..+|.. ...+++++++++|.++.++...+..+++|++|++++| .+..++...|..+++|++|++++|.++.+|
T Consensus 16 ~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 16 SQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp SSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 3445566643 4568999999999999998888889999999999999 788898888899999999999999999887
Q ss_pred cc-ccccccccccccccccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCC
Q 036714 558 SS-VSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRL 633 (932)
Q Consensus 558 ~~-i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l 633 (932)
.. +..+++|++|++++|. ++.+| .+.++++|++|++++|.++.+|.. +..+++|++|++++|.+. +.+
T Consensus 93 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~ 164 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTC 164 (208)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCT
T ss_pred HhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCC
Confidence 65 5889999999999975 55665 389999999999999999988775 688999999999999643 345
Q ss_pred CCcceEEee
Q 036714 634 RNLYKLKLS 642 (932)
Q Consensus 634 ~~L~~L~l~ 642 (932)
++|+.|+++
T Consensus 165 ~~l~~L~~~ 173 (208)
T 2o6s_A 165 PGIRYLSEW 173 (208)
T ss_dssp TTTHHHHHH
T ss_pred CCHHHHHHH
Confidence 566666554
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=2.3e-12 Score=135.17 Aligned_cols=142 Identities=20% Similarity=0.226 Sum_probs=125.7
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLL 570 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 570 (932)
...++.+++.+|.+..++ .+..+++|+.|++++| .+..++. +..+++|++|++++|.++.+|.... .+|++|+
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred cCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 457899999999999887 3568899999999999 7888877 6899999999999999999886444 9999999
Q ss_pred cccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 571 LRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 571 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
+++| .++.++.+.++++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|+.|+++.
T Consensus 113 L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~--~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 113 LDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCT--TSTTCCCCCEEEEEE
T ss_pred ccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchH--HhccCCCCCEEeCCC
Confidence 9996 4677788999999999999999999996 6899999999999999998883 379999999999994
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=5.7e-13 Score=160.19 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=105.3
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEE-----eecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLL-----LQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNL 566 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L 566 (932)
..++++++..|.+...+.... ....|+.+. +..| .+. ++...|..++.|+.|+|++|.+..+|..++.+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n-~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIEN-RMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHh-hcCccCcccccCcccccc-cee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 347778887777766544332 222333332 3333 233 44556689999999999999999999999999999
Q ss_pred cccccccccccCCCC-ChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCC
Q 036714 567 RSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGN 645 (932)
Q Consensus 567 ~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~ 645 (932)
++|+|++|. ++.+| .+++|++|++|+|++|.|+.+|..++.|++|++|+|++|.+..+|.+ +++|++|++|+++ .+
T Consensus 250 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~-~N 326 (727)
T 4b8c_D 250 TRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVE-GN 326 (727)
T ss_dssp SCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECT-TS
T ss_pred CEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCC-CC
Confidence 999999975 56888 79999999999999999999999999999999999999999999988 7999999999999 44
Q ss_pred chhhhcHHHHHHH
Q 036714 646 EALRETVEEAARL 658 (932)
Q Consensus 646 ~~~~~~~~~l~~l 658 (932)
.+....+..+..+
T Consensus 327 ~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 327 PLEKQFLKILTEK 339 (727)
T ss_dssp CCCSHHHHHHHHH
T ss_pred ccCCCChHHHhhc
Confidence 5555555555544
No 120
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=5e-13 Score=144.26 Aligned_cols=173 Identities=19% Similarity=0.108 Sum_probs=93.1
Q ss_pred ccccceeecccccccccCC----CcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc---cC--cccc
Q 036714 491 KANLERVSLMMNDIEEIPS----YMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV---LP--SSVS 561 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~---lp--~~i~ 561 (932)
..+++.+++++|.+..... ..+..+++|++|++++| .+..++...|..+++|++|+|++|.+.. ++ ..+.
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 3456666666666554211 11224566666666666 4555555445666666666666666432 22 2224
Q ss_pred ccccccccccccccccCCCCC-----hhccccCcEeecccCCCccc-ccccccC---CCCCEEeCCCCCCcccCCCccCC
Q 036714 562 DLMNLRSLLLRWCENLERVPS-----LAKLLALQYLDLEETGIEEV-PEGMEML---ENLSHLYLSSPRLKKFPTGILPR 632 (932)
Q Consensus 562 ~l~~L~~L~L~~~~~l~~lp~-----~~~l~~L~~L~l~~~~i~~l-p~~~~~l---~~L~~L~l~~~~l~~~p~~~l~~ 632 (932)
.+++|++|+|++|. ++.+|. ++.+++|++|++++|.+..+ |..+..+ ++|++|++++|.++.+|..+ .
T Consensus 195 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P- 271 (310)
T ss_dssp SSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C-
T ss_pred cCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-c-
Confidence 56666666666653 333331 34556666666666666654 5555444 46666666666666666543 1
Q ss_pred CCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecCh
Q 036714 633 LRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTL 672 (932)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 672 (932)
++|++|+++.+ .+.... .+..+ ++|+.|+++.|.+
T Consensus 272 -~~L~~L~Ls~N-~l~~~~--~~~~l-~~L~~L~L~~N~l 306 (310)
T 4glp_A 272 -AKLRVLDLSSN-RLNRAP--QPDEL-PEVDNLTLDGNPF 306 (310)
T ss_dssp -SCCSCEECCSC-CCCSCC--CTTSC-CCCSCEECSSTTT
T ss_pred -CCCCEEECCCC-cCCCCc--hhhhC-CCccEEECcCCCC
Confidence 56666666632 222211 13444 5666666655543
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=2.5e-12 Score=148.89 Aligned_cols=130 Identities=21% Similarity=0.382 Sum_probs=102.8
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLR 572 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 572 (932)
+++.+++.+|.++.+|...+ ++|++|++++| .+..+| ..+++|++|++++|.++.+|. ++. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 57788888888888776553 67888899888 677777 346888889999888888887 655 88888888
Q ss_pred cccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 573 WCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 573 ~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
+|. ++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|+.|+++.
T Consensus 129 ~N~-l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 129 NNQ-LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVST 189 (571)
T ss_dssp SSC-CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCS
T ss_pred CCc-CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcC
Confidence 864 555776 67888888888888888876 57788888888888888877 34 7788888873
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1.6e-12 Score=126.39 Aligned_cols=124 Identities=20% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCceEEEeecCCCcc--CCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-ChhccccCcEe
Q 036714 516 DILSTLLLQANGNLW--TIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYL 592 (932)
Q Consensus 516 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 592 (932)
++|+.|++++| .+. .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.....+| .+.++++|++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCC-CCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45555555555 333 44443 35556666666666665555 445556666666666554333345 34456666666
Q ss_pred ecccCCCcccc--cccccCCCCCEEeCCCCCCcccCC---CccCCCCCcceEEee
Q 036714 593 DLEETGIEEVP--EGMEMLENLSHLYLSSPRLKKFPT---GILPRLRNLYKLKLS 642 (932)
Q Consensus 593 ~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~---~~l~~l~~L~~L~l~ 642 (932)
++++|.++.+| ..+..+++|++|++++|.+..+|. ..+..+++|+.|+++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 66666666554 455566666666666666655554 234556666666555
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=1.2e-12 Score=124.55 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=90.1
Q ss_pred CCceEEEeecCCCcc--CCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-ChhccccCcEe
Q 036714 516 DILSTLLLQANGNLW--TIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYL 592 (932)
Q Consensus 516 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 592 (932)
++|+.|++++| .+. .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.....+| .+.++++|++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCC-cCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 56667777776 444 55553 36777788888888877766 567778888888888765444466 46668888888
Q ss_pred ecccCCCcccc--cccccCCCCCEEeCCCCCCcccCC---CccCCCCCcceEEee
Q 036714 593 DLEETGIEEVP--EGMEMLENLSHLYLSSPRLKKFPT---GILPRLRNLYKLKLS 642 (932)
Q Consensus 593 ~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~---~~l~~l~~L~~L~l~ 642 (932)
++++|.++.+| ..+..+++|++|++++|.+..+|. ..++.+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888888765 677888888888888888877776 456778888887765
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=2.9e-12 Score=124.54 Aligned_cols=133 Identities=23% Similarity=0.201 Sum_probs=114.9
Q ss_pred ccccceeeccccccc--ccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc-cCcccccccccc
Q 036714 491 KANLERVSLMMNDIE--EIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV-LPSSVSDLMNLR 567 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~ 567 (932)
+..++++++++|.+. .+|.. +..+++|++|++++| .+..+ ..+..+++|++|++++|.+.. +|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 356999999999998 67654 578999999999999 67776 346899999999999999997 777777799999
Q ss_pred ccccccccccCCCC---ChhccccCcEeecccCCCccccc----ccccCCCCCEEeCCCCCCcccCCC
Q 036714 568 SLLLRWCENLERVP---SLAKLLALQYLDLEETGIEEVPE----GMEMLENLSHLYLSSPRLKKFPTG 628 (932)
Q Consensus 568 ~L~L~~~~~l~~lp---~~~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~~~l~~~p~~ 628 (932)
+|++++|. ++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.+.++|.+
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999975 56654 58899999999999999999887 788999999999999998888764
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=6.6e-12 Score=145.32 Aligned_cols=168 Identities=21% Similarity=0.249 Sum_probs=119.7
Q ss_pred ccccCCCccccccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc
Q 036714 480 RLQEFPGKQEWKANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS 559 (932)
Q Consensus 480 ~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 559 (932)
.+..+|.. ...+++.|++++|.++.+| ..+++|++|++++| .+..+|. + .. +|++|+|++|.++.+|.
T Consensus 70 ~L~~lp~~--l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~- 137 (571)
T 3cvr_A 70 NLSSLPDN--LPPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-L-PA--SLKHLDVDNNQLTMLPE- 137 (571)
T ss_dssp CCSCCCSC--CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-C-CT--TCCEEECCSSCCSCCCC-
T ss_pred CCCccCHh--HcCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-h-hc--CCCEEECCCCcCCCCCC-
Confidence 34445543 2356888888888888776 24678888888888 6666776 3 33 78888888888888876
Q ss_pred ccccccccccccccccccCCCCChhccccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCc---
Q 036714 560 VSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNL--- 636 (932)
Q Consensus 560 i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L--- 636 (932)
.+++|++|+|++|. ++.+|. .+++|++|++++|.++.+|. +. ++|++|++++|.++.+|. + .. +|
T Consensus 138 --~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~-~~--~L~~~ 205 (571)
T 3cvr_A 138 --LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V-PV--RNHHS 205 (571)
T ss_dssp --CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C-C--------
T ss_pred --cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H-HH--hhhcc
Confidence 67888888888755 556775 56788888888888888877 55 788888888888888777 3 33 56
Q ss_pred ----ceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhh
Q 036714 637 ----YKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLND 674 (932)
Q Consensus 637 ----~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 674 (932)
+.|+++. +.+.. .+..+..+ ++|+.|+++.|.+..
T Consensus 206 ~~~L~~L~Ls~-N~l~~-lp~~l~~l-~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 206 EETEIFFRCRE-NRITH-IPENILSL-DPTCTIILEDNPLSS 244 (571)
T ss_dssp --CCEEEECCS-SCCCC-CCGGGGGS-CTTEEEECCSSSCCH
T ss_pred cccceEEecCC-Cccee-cCHHHhcC-CCCCEEEeeCCcCCC
Confidence 8888873 33332 33455566 888888888887653
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=8.4e-13 Score=145.87 Aligned_cols=181 Identities=15% Similarity=0.208 Sum_probs=133.6
Q ss_pred ccccceeecccccccccCC----CcCCCCC-CceEEEeecCCCccCCChhhhccC-----CceeEEEccCCCCcccC-cc
Q 036714 491 KANLERVSLMMNDIEEIPS----YMSPHCD-ILSTLLLQANGNLWTIPECFFVYM-----HGLKVLNLSRTNIKVLP-SS 559 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~~~~lp-~~ 559 (932)
..+++++++++|.+...+. ..+..++ +|++|++++| .+.......+..+ ++|++|+|++|.++..+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3459999999999988765 5556777 8999999999 7776655444554 99999999999988554 33
Q ss_pred ----cccc-ccccccccccccccCCCC--Chhc-----cccCcEeecccCCCc-----ccccccccCC-CCCEEeCCCCC
Q 036714 560 ----VSDL-MNLRSLLLRWCENLERVP--SLAK-----LLALQYLDLEETGIE-----EVPEGMEMLE-NLSHLYLSSPR 621 (932)
Q Consensus 560 ----i~~l-~~L~~L~L~~~~~l~~lp--~~~~-----l~~L~~L~l~~~~i~-----~lp~~~~~l~-~L~~L~l~~~~ 621 (932)
+..+ ++|++|+|++|. ++..+ .+.. ..+|++|++++|.+. .++..+..++ +|++|++++|.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 3444 899999999977 45444 3433 369999999999888 4556666666 99999999999
Q ss_pred CcccCCC----ccCCC-CCcceEEeecCCchhhhcHH----HHHHHHhccceeEEEecChhh
Q 036714 622 LKKFPTG----ILPRL-RNLYKLKLSFGNEALRETVE----EAARLSDRLDTFEGIFSTLND 674 (932)
Q Consensus 622 l~~~p~~----~l~~l-~~L~~L~l~~~~~~~~~~~~----~l~~l~~~L~~L~l~~~~~~~ 674 (932)
+...... .+..+ ++|++|+++. +.+...... .+..+.++|+.|+++.|.+..
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCC-CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 8766542 23455 5999999994 445554433 344432589999999887654
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.28 E-value=1.5e-10 Score=129.16 Aligned_cols=289 Identities=16% Similarity=0.161 Sum_probs=173.0
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEEEEECCccCHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLYLIKLQ 206 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 206 (932)
..++|| +++++++..++. ....+.+.|+|++|+||||+|+.+++...... +.-..++|+++....+...+.
T Consensus 19 ~~~~gr--~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHR--EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTC--HHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCH--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 679999 778888888774 34567899999999999999999998863221 112356778888878888899
Q ss_pred HHHHHHHhccccccc-hHHHHHHHHHHHHh-cCCeEEEEEeccccccc-------cccccCCCCCC--CCCcEEEEEeCC
Q 036714 207 TEIATALKQSLLENE-DKVRRAGELLGMLK-AKEKFVLILDDMWEAFR-------LEEVGIPEPSE--ENGCKLVVTTRS 275 (932)
Q Consensus 207 ~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~-------~~~l~~~~~~~--~~gs~iivTTR~ 275 (932)
..++.+++....... ........+...+. .+++.+|||||++.... +..+....... ..+..+|+||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 999999876432211 12223334444443 35689999999976321 11111111111 345678888876
Q ss_pred cccc--------ccccceeEeccCCCHHHHHHHHHHhhCC--CCCCCChhhHHHHHHHHHHcC---CCcHHH-HHHHhhh
Q 036714 276 VGIC--------RSMGCKEVRVQPLSNEEALNLFLDKVGS--STLQIPTLDKKIINLVVEECA---GLPLAI-VTVAGCM 341 (932)
Q Consensus 276 ~~v~--------~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Plai-~~~~~~L 341 (932)
.... ..+....+.+++++.++..+++...+.. .....+ .++.+.+++.++ |.|..+ ..+..+.
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5321 2222234899999999999999987532 111122 245667777777 999433 3332221
Q ss_pred c-----C--CCchHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCCchhhHHHHHHhh-cCCCCcccChHHHHHHHH
Q 036714 342 R-----G--VDEIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKVQQCFLYCA-LYPEDFAIPKDELIDYWI 413 (932)
Q Consensus 342 ~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a-~fp~~~~i~~~~Li~~w~ 413 (932)
. + .-+.+.++.++.... ...+.-++..|+ ++.+..+..++ ++.....+....+.+...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~-~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLP-LHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSC-HHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCC-HHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 123555666555432 123455677888 56666666555 443222455554444321
Q ss_pred H----hCCcccchhhhhHHhHHHHHHHHHHHccccccc
Q 036714 414 A----EGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 447 (932)
Q Consensus 414 a----~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 447 (932)
. .| ... .....+..+++.|...|+++..
T Consensus 320 ~~~~~~~-~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LEH-----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCeEEE
Confidence 1 12 111 1235677889999999999874
No 128
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=137.81 Aligned_cols=149 Identities=24% Similarity=0.227 Sum_probs=123.5
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccC--CC-hhhhccCCceeEEEccCCCCcccCcc----cccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWT--IP-ECFFVYMHGLKVLNLSRTNIKVLPSS----VSDL 563 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~~~l~~L~~L~L~~~~~~~lp~~----i~~l 563 (932)
..+++++++++|.+..++...+..+++|++|++++|..... ++ ...+..+++|++|++++|.++.+|.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 45799999999999999888888999999999999942221 21 22236789999999999999877653 4678
Q ss_pred ccccccccccccccCCCC-Chhcc---ccCcEeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceE
Q 036714 564 MNLRSLLLRWCENLERVP-SLAKL---LALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKL 639 (932)
Q Consensus 564 ~~L~~L~L~~~~~l~~lp-~~~~l---~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L 639 (932)
++|++|+|++|......| .+..+ ++|++|++++|.++.+|..+. ++|++|++++|.++.+|. +..+++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch--hhhCCCccEE
Confidence 999999999987555546 56666 699999999999999998875 799999999999998876 5889999999
Q ss_pred Eeec
Q 036714 640 KLSF 643 (932)
Q Consensus 640 ~l~~ 643 (932)
+++.
T Consensus 300 ~L~~ 303 (310)
T 4glp_A 300 TLDG 303 (310)
T ss_dssp ECSS
T ss_pred ECcC
Confidence 9983
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.7e-11 Score=121.87 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=87.2
Q ss_pred eEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC--ChhccccCcEeeccc
Q 036714 519 STLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEE 596 (932)
Q Consensus 519 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~ 596 (932)
++++++++ .+..+|..+ .+.|++|++++|.++.+|..+..+++|++|+|++|. ++.++ .|.++++|++|++++
T Consensus 13 ~~l~~~~~-~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC
Confidence 34555555 555666543 246777777777777777777777777777777754 34444 477888888888888
Q ss_pred CCCccccc-ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 597 TGIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 597 ~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
|.++.+|. .+..+++|++|++++|.+..+|.+.+..+++|+.|+++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 88887764 577888888888888888888887778888888888873
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=1.2e-10 Score=129.92 Aligned_cols=291 Identities=14% Similarity=0.145 Sum_probs=166.9
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
..++|| +++++.+.+++. ......+.|+|++|+||||||+.+++...........++|+.+....+...+...+
T Consensus 20 ~~~~gr--~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHR--EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTC--HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 679999 778888888876 44567999999999999999999999874321112356788776666777777887
Q ss_pred HHHHhccccccc-hHHHHHHHHHHHHh-cCCeEEEEEecccccc------ccccccCCCCC-CCCCcEEEEEeCCccccc
Q 036714 210 ATALKQSLLENE-DKVRRAGELLGMLK-AKEKFVLILDDMWEAF------RLEEVGIPEPS-EENGCKLVVTTRSVGICR 280 (932)
Q Consensus 210 ~~~l~~~~~~~~-~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~iivTTR~~~v~~ 280 (932)
+.+++....... +.......+...+. .+++.+||||+++... .+..+...... ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 777754322111 12222333333333 3458999999997532 22222111110 134556788887654322
Q ss_pred c--------ccceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcC---CCcHHHHHHH-hhhc-----C
Q 036714 281 S--------MGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECA---GLPLAIVTVA-GCMR-----G 343 (932)
Q Consensus 281 ~--------~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Plai~~~~-~~L~-----~ 343 (932)
. +....+.+++++.++..+++.+.+..... ......++.+.+++.++ |.|..+..+. .+.. +
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 1 22224999999999999999986531100 01122455666777777 9998444332 2211 1
Q ss_pred --CCchHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCCchhhHHHHHHhhcCCC-C-cccChHHHHHHHH--H--h
Q 036714 344 --VDEIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKVQQCFLYCALYPE-D-FAIPKDELIDYWI--A--E 415 (932)
Q Consensus 344 --~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~-~-~~i~~~~Li~~w~--a--~ 415 (932)
.-+.+.++.++.... ...+.-++..+| ...+..+..++...+ + ..+....+.+... + .
T Consensus 257 ~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~-~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE-------------RDRVRDIILTLP-FHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp CSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSC-HHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------------hchHHHHHHcCC-HHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 123445555544332 123455667788 566666665653211 1 1233333332221 1 1
Q ss_pred CCcccchhhhhHHhHHHHHHHHHHHccccccc
Q 036714 416 GFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 447 (932)
Q Consensus 416 g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 447 (932)
|. .. ........+++.|...|+++..
T Consensus 323 g~-~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 GV-EA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp TC-CC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CC-CC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 21 11 1124567789999999999763
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=1.1e-10 Score=130.32 Aligned_cols=289 Identities=15% Similarity=0.135 Sum_probs=171.1
Q ss_pred ccccccchHHHHHHHHHHhcC----CCee--EEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG----DKVT--KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQT 207 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 207 (932)
..++|| +++++++..++.. .... .+.|+|++|+||||||+.+++.... ..-..+++++++...+...+..
T Consensus 17 ~~l~gr--~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHR--EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD--KTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTC--HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT--SCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh--hcCeeEEEEeCccCCCHHHHHH
Confidence 679999 6677777777653 3334 8999999999999999999998631 1123567788777778888888
Q ss_pred HHHHHHhccccccc-hHHHHHHHHHHHHh-cCCeEEEEEeccccc--cccccccCCCCCC-C---CCcEEEEEeCCcccc
Q 036714 208 EIATALKQSLLENE-DKVRRAGELLGMLK-AKEKFVLILDDMWEA--FRLEEVGIPEPSE-E---NGCKLVVTTRSVGIC 279 (932)
Q Consensus 208 ~i~~~l~~~~~~~~-~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~-~---~gs~iivTTR~~~v~ 279 (932)
.++..++....... ........+...+. .+++.+||||+++.. ..+..+...+... . .+..||+||+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99888865432211 22222222222222 356899999999764 2233332222111 1 366788888765332
Q ss_pred cc--------ccceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHc---------CCCcHHHHHHHhhhc
Q 036714 280 RS--------MGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEEC---------AGLPLAIVTVAGCMR 342 (932)
Q Consensus 280 ~~--------~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Plai~~~~~~L~ 342 (932)
.. +....+.+.+++.++..+++...+..... ...-..+..+.|++.+ +|.|..+..+.....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 21 22223899999999999999886532100 0122346778888888 788765544433211
Q ss_pred ------CCC--chHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCCchhhHHHHHHhhcCC---CCcccChHHHHHH
Q 036714 343 ------GVD--EIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKVQQCFLYCALYP---EDFAIPKDELIDY 411 (932)
Q Consensus 343 ------~~~--~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp---~~~~i~~~~Li~~ 411 (932)
+.. +.+....++.... ...+.-.+..|+ .+.+.++..++.+. .+..++...+...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~-~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLP-LHEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSC-HHHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCC-HHHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 111 2223333333221 112233456787 67777777677553 2224555666554
Q ss_pred HHH----hCCcccchhhhhHHhHHHHHHHHHHHccccccc
Q 036714 412 WIA----EGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 447 (932)
Q Consensus 412 w~a----~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 447 (932)
+.. .|... ........++++|...+++...
T Consensus 318 ~~~~~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 318 YKIVCEEYGERP------RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHTTCCC------CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHcCCCC------CCHHHHHHHHHHHHhCCCeEEe
Confidence 432 12111 1124567889999999999874
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=9.5e-12 Score=121.86 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=102.3
Q ss_pred CCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-C-hhccccC
Q 036714 512 SPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-S-LAKLLAL 589 (932)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~-~~~l~~L 589 (932)
+.++++|+.|++++| .+..+|. +....++|++|++++|.++.+ ..+..+++|++|++++|. ++.+| . +..+++|
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 346778899999988 6777754 333444899999999998887 568889999999999865 55566 4 5889999
Q ss_pred cEeecccCCCccccc--ccccCCCCCEEeCCCCCCcccCCC---ccCCCCCcceEEeecC
Q 036714 590 QYLDLEETGIEEVPE--GMEMLENLSHLYLSSPRLKKFPTG---ILPRLRNLYKLKLSFG 644 (932)
Q Consensus 590 ~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~~p~~---~l~~l~~L~~L~l~~~ 644 (932)
++|++++|.+..+|. .+..+++|++|++++|.+..+|.. ++..+++|+.|+++.+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999999988887 788899999999999988887764 4577888888887743
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=1.1e-09 Score=121.92 Aligned_cols=282 Identities=12% Similarity=0.071 Sum_probs=165.7
Q ss_pred ccccccchHHHHHHHHHHh----cCCCeeEEEEEeCCCChHHHHHHHHHHHHhhcc----CC-CcEEEEEEECCcc-CHH
Q 036714 134 ATLAGEKTKKVVEEIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET----NK-FNVVIWVTVSQPL-YLI 203 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~-f~~~~wv~~s~~~-~~~ 203 (932)
..++|| +++++++..++ .+...+.+.|+|++|+||||+|+.+++...... .. ...++|++++... +..
T Consensus 20 ~~l~gr--~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFR--EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTC--HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 679999 66666666554 344567999999999999999999999863321 11 3457788877766 788
Q ss_pred HHHHHHHHHHhcc-ccc-cchHHHHHHHHHHHHhcCCeEEEEEeccccccc-------cccccCCCCCCCCCcEEEEEeC
Q 036714 204 KLQTEIATALKQS-LLE-NEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR-------LEEVGIPEPSEENGCKLVVTTR 274 (932)
Q Consensus 204 ~~~~~i~~~l~~~-~~~-~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTTR 274 (932)
.+...++.++... ... ..........+...+ ..++.+|||||++.... +..+.... .+..||+||+
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~ 172 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-RNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-SSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECS
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-ccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEEC
Confidence 8888888887321 111 111122333444444 34444999999976321 22222111 5778999998
Q ss_pred Ccccc----c----cccceeEeccCCCHHHHHHHHHHhhCC--CCCCCChhhHHHHHHHHHHcC---CCcH-HHHHHHhh
Q 036714 275 SVGIC----R----SMGCKEVRVQPLSNEEALNLFLDKVGS--STLQIPTLDKKIINLVVEECA---GLPL-AIVTVAGC 340 (932)
Q Consensus 275 ~~~v~----~----~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Pl-ai~~~~~~ 340 (932)
..... . ..+. .+.+++++.++..+++...+.. .....+ .+..+.|++.++ |.|. ++..+-.+
T Consensus 173 ~~~~~~~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp STTTTTTSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 75321 1 1112 4999999999999999987531 111122 345667777777 9887 44333332
Q ss_pred h--c---CCCchHHHHHHHHHHhcccccCCCCchhHHhHhHhhhccCCchhhHHHHHHhhcCCCCcccChHHHHHHHHHh
Q 036714 341 M--R---GVDEIHEWRNALNELRGRVRSLNGVDTEVFGRLEFSYHRLKHEKVQQCFLYCALYPEDFAIPKDELIDYWIAE 415 (932)
Q Consensus 341 L--~---~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~ 415 (932)
. . ..-+.+.++.++++.. ...+.-++..|+ +..+..+..++....+-.+. +......-..
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~-~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~ 313 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE-------------QERLIEAVKALP-FHYKLALRSLIESEDVMSAH-KMYTDLCNKF 313 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH-------------HHHHHHHHHSSC-HHHHHHHHHHHTCCBHHHHH-HHHHHHHHHT
T ss_pred HHHhcCCCccCHHHHHHHHHHHh-------------cchHHHHHHcCC-HHHHHHHHHHHHhcccChHH-HHHHHHHHHc
Confidence 2 1 1234566666666542 133556678888 56666666566511100110 0111111111
Q ss_pred CCcccchhhhhHHhHHHHHHHHHHHccccccc
Q 036714 416 GFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 447 (932)
Q Consensus 416 g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 447 (932)
| ... ........+++.|+..|+++..
T Consensus 314 g-~~~-----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 314 K-QKP-----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp T-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred C-CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 2 111 1235667889999999999864
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=2.5e-11 Score=120.70 Aligned_cols=119 Identities=23% Similarity=0.224 Sum_probs=63.7
Q ss_pred EEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc--ccccccccccccccccccCCCC-ChhccccCcEeeccc
Q 036714 520 TLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS--VSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEE 596 (932)
Q Consensus 520 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~--i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~ 596 (932)
+++++++ .+..+|..+ ...|++|++++|.+..+|.. +..+++|++|+|++|..-...| .+.++++|++|++++
T Consensus 12 ~l~~s~~-~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGR-GLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTS-CCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCC-CcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3444444 344444432 12455555555555554432 4555555555555544332334 455666666666666
Q ss_pred CCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 597 TGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 597 ~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
|.++.++.. +..+++|++|++++|.++.+++..+..+++|++|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 666655433 5566666666666666665544445666666666665
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=2.7e-11 Score=120.41 Aligned_cols=125 Identities=26% Similarity=0.298 Sum_probs=107.2
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChh-hhccCCceeEEEccCCCCccc-Cccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPEC-FFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLR 572 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~ 572 (932)
+.++++++.++.+|.... ++|++|++++| .+..++.. +|..+++|++|+|++|.++.+ |..+..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 678899999999887554 38999999999 77777764 578999999999999999976 7789999999999999
Q ss_pred cccccCCCC-ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCc
Q 036714 573 WCENLERVP-SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLK 623 (932)
Q Consensus 573 ~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~ 623 (932)
+|......| .+.++++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 976444444 599999999999999999976 677899999999999999864
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=6e-12 Score=146.51 Aligned_cols=138 Identities=20% Similarity=0.160 Sum_probs=113.4
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcccccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRW 573 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (932)
+..+.+.+|.+..++. ..|++|++++| .+..+|. ++.+++|++|+|++|.++.+|..++.+++|++|+|++
T Consensus 425 L~~l~l~~n~i~~l~~------~~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY------ADVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHH------TTCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhhcccccccCc------cCceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence 4455556666665543 24889999998 7888886 6889999999999999999999999999999999998
Q ss_pred ccccCCCCChhccccCcEeecccCCCccc--ccccccCCCCCEEeCCCCCCcccCCCc---cCCCCCcceEEe
Q 036714 574 CENLERVPSLAKLLALQYLDLEETGIEEV--PEGMEMLENLSHLYLSSPRLKKFPTGI---LPRLRNLYKLKL 641 (932)
Q Consensus 574 ~~~l~~lp~~~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~l~~~p~~~---l~~l~~L~~L~l 641 (932)
|. ++.+|.++++++|++|++++|.++.+ |..++.+++|+.|++++|.+..+|+.. +..+++|+.|++
T Consensus 496 N~-l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NA-LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SC-CCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CC-CCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 64 66688899999999999999999988 889999999999999999988887643 234778888753
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=6.6e-11 Score=117.53 Aligned_cols=123 Identities=27% Similarity=0.423 Sum_probs=106.0
Q ss_pred ceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-cccccccccccccccc
Q 036714 495 ERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLLLRW 573 (932)
Q Consensus 495 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~ 573 (932)
+.++++++.++.+|.... ++|++|++++| .+..+|. .|.++++|++|+|++|.++.++ ..+..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n-~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGN-QFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSS-CCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCC-cCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 467888899999887543 68999999999 7888985 4599999999999999999876 4588999999999999
Q ss_pred ccccCCCC--ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCCCCCc
Q 036714 574 CENLERVP--SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSSPRLK 623 (932)
Q Consensus 574 ~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~ 623 (932)
|. ++.++ .|.++++|++|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred Cc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 76 55554 599999999999999999999875 788999999999998754
No 138
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.19 E-value=3.5e-11 Score=106.79 Aligned_cols=78 Identities=13% Similarity=0.268 Sum_probs=67.7
Q ss_pred HHHHHHhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 036714 2 ILEFFKCAGPPIHQYVRRHRKLSEIMRNLERALQELNSKKGDIEATLKVECDLGKKQPSNEVNDWLKNVERINNEAQSIE 81 (932)
Q Consensus 2 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~l~~a~~~~~~~~~~~v~~Wl~~v~~~~~~~~~~~ 81 (932)
+-.+++|+++.+.+|+.++.++++++++|+++|+.|++++.+++ .+.....+++|+.|+++||+++||+||++
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~-------~~~~~~~d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIG-------EVPREQLDSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-------HhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999998865 21112358899999999999999999999
Q ss_pred HHHhc
Q 036714 82 EEVKK 86 (932)
Q Consensus 82 d~~~~ 86 (932)
|+|..
T Consensus 76 D~f~~ 80 (115)
T 3qfl_A 76 DKFLV 80 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99853
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1.7e-11 Score=116.36 Aligned_cols=127 Identities=25% Similarity=0.253 Sum_probs=106.8
Q ss_pred cCCceeEEEccCCCCc--ccCccccccccccccccccccccCCCCChhccccCcEeecccCCCcc-cccccccCCCCCEE
Q 036714 539 YMHGLKVLNLSRTNIK--VLPSSVSDLMNLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEE-VPEGMEMLENLSHL 615 (932)
Q Consensus 539 ~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L 615 (932)
..++|+.|++++|.+. .+|..+..+++|++|++++|. ++.++.++++++|++|++++|.+.. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 899988999999999999975 5666789999999999999999998 78777889999999
Q ss_pred eCCCCCCcccCC-CccCCCCCcceEEeecCCchhhhcH---HHHHHHHhccceeEEE
Q 036714 616 YLSSPRLKKFPT-GILPRLRNLYKLKLSFGNEALRETV---EEAARLSDRLDTFEGI 668 (932)
Q Consensus 616 ~l~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~~L~~L~l~ 668 (932)
++++|.+..++. ..++.+++|++|+++.+ .+..... ..+..+ ++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l-~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLL-PQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHC-TTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHC-CCcccccCC
Confidence 999999988652 33799999999999944 4444443 567788 899988764
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1.3e-10 Score=113.95 Aligned_cols=119 Identities=28% Similarity=0.455 Sum_probs=69.9
Q ss_pred EEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc-ccccccccccccccccccCCCC--ChhccccCcEeeccc
Q 036714 520 TLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS-VSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEE 596 (932)
Q Consensus 520 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~ 596 (932)
.++++++ .+..+|..+ .++|++|++++|.+..+|.. +..+++|++|++++|. ++.+| .+..+++|++|++++
T Consensus 11 ~l~~~~~-~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 11 EIRCNSK-GLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEECCSS-CCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCC-CCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCC
Confidence 3444444 344444322 24455555555555544432 3455556666665543 33443 256666777777777
Q ss_pred CCCcccccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 597 TGIEEVPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 597 ~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
|.++.+|.. +..+++|++|++++|.+..+|..++..+++|++|+++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 777766554 46677777777777777777776666777777777763
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=5.1e-11 Score=116.62 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=110.6
Q ss_pred hccCCceeEEEccCCCCcccCccccccc-cccccccccccccCCCCChhccccCcEeecccCCCccccccc-ccCCCCCE
Q 036714 537 FVYMHGLKVLNLSRTNIKVLPSSVSDLM-NLRSLLLRWCENLERVPSLAKLLALQYLDLEETGIEEVPEGM-EMLENLSH 614 (932)
Q Consensus 537 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~ 614 (932)
+.++.+|+.|++++|.++.+|. +..+. +|++|++++|. ++.++.+..+++|++|++++|.++.+|..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3578899999999999998875 55555 99999999975 556678999999999999999999998766 89999999
Q ss_pred EeCCCCCCcccCC-CccCCCCCcceEEeecCCchhhhcH---HHHHHHHhccceeEEEecChhh
Q 036714 615 LYLSSPRLKKFPT-GILPRLRNLYKLKLSFGNEALRETV---EEAARLSDRLDTFEGIFSTLND 674 (932)
Q Consensus 615 L~l~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~~L~~L~l~~~~~~~ 674 (932)
|++++|.+..+|. ..+..+++|++|+++.+ .+..... ..+..+ ++|+.|+++.+....
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l-~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKV-PQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHC-TTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHC-CccceeCCCcCCHHH
Confidence 9999999998886 23789999999999943 3333221 247788 999999999887654
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=2.8e-11 Score=145.48 Aligned_cols=115 Identities=24% Similarity=0.314 Sum_probs=86.1
Q ss_pred CCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-Chhcc
Q 036714 508 PSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKL 586 (932)
Q Consensus 508 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l 586 (932)
++..+..+++|++|++++| .+..+|..++ .+++|++|+|++|.++.+|..++.+++|++|+|++|. ++.+| .+++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNL-QIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTS-CCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCC-CCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 3445667778888888887 6667777764 6788888888888888888888888888888888765 45777 68888
Q ss_pred ccCcEeecccCCCcccccccccCCCCCEEeCCCCCCccc
Q 036714 587 LALQYLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKF 625 (932)
Q Consensus 587 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~ 625 (932)
.+|++|+|++|.+..+|..++.|++|++|+|++|.+...
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 888888888888888888888888888888888877643
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=2.7e-10 Score=111.54 Aligned_cols=125 Identities=25% Similarity=0.431 Sum_probs=107.1
Q ss_pred cceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCcc-ccccccccccccc
Q 036714 494 LERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSS-VSDLMNLRSLLLR 572 (932)
Q Consensus 494 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~L~ 572 (932)
.+.+++.++++..+|.... ++|+.|++++| .+..++...|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP---SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC---TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCCC---CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4578888888988876543 68999999999 78888888789999999999999999988765 5889999999999
Q ss_pred cccccCCCC--ChhccccCcEeecccCCCccccccc-ccCCCCCEEeCCCCCCc
Q 036714 573 WCENLERVP--SLAKLLALQYLDLEETGIEEVPEGM-EMLENLSHLYLSSPRLK 623 (932)
Q Consensus 573 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~ 623 (932)
+|. ++.+| .+.++++|++|++++|.++.+|..+ ..+++|++|++++|.+.
T Consensus 85 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 965 55665 3789999999999999999998764 77999999999999754
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=1.3e-12 Score=130.93 Aligned_cols=132 Identities=26% Similarity=0.316 Sum_probs=79.7
Q ss_pred ccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC-ChhccccCcEeecccCCCcccccccc
Q 036714 529 LWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGME 607 (932)
Q Consensus 529 ~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~ 607 (932)
+..+|.. +..+++|++|++++|.++.+| .+..+++|++|++++|. ++.+| .+..+++|++|++++|.+..+| .+.
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 3444443 366667777777776666666 56666777777776653 44566 3555667777777777666665 466
Q ss_pred cCCCCCEEeCCCCCCcccCC-CccCCCCCcceEEeecCCchhhh----------cHHHHHHHHhccceeE
Q 036714 608 MLENLSHLYLSSPRLKKFPT-GILPRLRNLYKLKLSFGNEALRE----------TVEEAARLSDRLDTFE 666 (932)
Q Consensus 608 ~l~~L~~L~l~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~----------~~~~l~~l~~~L~~L~ 666 (932)
.+++|++|++++|.+..++. ..+..+++|++|+++.+ .+... ....+..+ ++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l-~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRL-PNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHC-SSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhC-CCcEEEC
Confidence 66677777777766665543 22566677777777632 22221 11235555 7777765
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.07 E-value=7.8e-10 Score=114.53 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=112.3
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
..++|| +..++.+..++..+. .+.+.|+|++|+||||+|+.+++..... ..+.. ..+ ...... ..+...
T Consensus 23 ~~~~g~--~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~-~~~~~---~~~---~~~~~~-~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQ--EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGITA---TPC---GVCDNC-REIEQG 92 (250)
T ss_dssp GGCCSC--HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT-TCSCS---SCC---SCSHHH-HHHHTT
T ss_pred HHHhCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCCC---CCC---cccHHH-HHHhcc
Confidence 679999 678888888886544 4689999999999999999999886321 11100 000 000000 000000
Q ss_pred Hhcc----ccccchHHHHHHHHHHHH----hcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCccc-ccc
Q 036714 213 LKQS----LLENEDKVRRAGELLGML----KAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVGI-CRS 281 (932)
Q Consensus 213 l~~~----~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~ 281 (932)
.... .............+...+ ..+++.+||+||++.. ..++.+...+.....+..+|+||+.... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 000001111122222222 1346799999999763 3344443333223456788888876432 111
Q ss_pred c--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhh
Q 036714 282 M--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGC 340 (932)
Q Consensus 282 ~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 340 (932)
. ....+++++++.++..+++...+..... ....+..+.|++.++|.|..+..+...
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1223999999999999999987643221 122456788999999999998876643
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.06 E-value=1e-09 Score=111.92 Aligned_cols=183 Identities=13% Similarity=0.159 Sum_probs=112.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
..++|+ ++.++.+..++.....+.+.|+|++|+|||++|+.+++..... ..-...+.+..+.......+...+....
T Consensus 17 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 17 DEVVGQ--DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp GGCCSC--HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HHHcCc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHHHHHHHHHh
Confidence 678999 7788889898887766669999999999999999999876321 1111233444444333332222111111
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCccc-cccc--cceeEe
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVGI-CRSM--GCKEVR 288 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~v-~~~~--~~~~~~ 288 (932)
... ....+++.+||+||++.. ...+.+...+.....+.++|+||+...- .... ....++
T Consensus 94 ~~~----------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 94 RTA----------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp TSC----------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ccc----------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 000 011357899999999763 2233332222222456788888876432 1111 112389
Q ss_pred ccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 289 VQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 289 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
+.+++.++..+++.+.+..... .-..+..+.|++.++|.|..+..+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999987642211 1124567788999999998655443
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=3.6e-10 Score=131.55 Aligned_cols=119 Identities=22% Similarity=0.277 Sum_probs=105.0
Q ss_pred ccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccc
Q 036714 493 NLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLR 572 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 572 (932)
.++.|++++|.++.+|. +..+++|+.|++++| .+..+|..+ +.+++|++|+|++|.++.+| .++.+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 47889999999999875 678999999999999 788999865 89999999999999999999 89999999999999
Q ss_pred cccccCCC--C-ChhccccCcEeecccCCCcccccccc----cCCCCCEEeC
Q 036714 573 WCENLERV--P-SLAKLLALQYLDLEETGIEEVPEGME----MLENLSHLYL 617 (932)
Q Consensus 573 ~~~~l~~l--p-~~~~l~~L~~L~l~~~~i~~lp~~~~----~l~~L~~L~l 617 (932)
+|. ++.+ | .++++++|++|++++|.++.+|+.+. .+++|+.|++
T Consensus 517 ~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 976 4554 7 79999999999999999998876543 4889999874
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1.6e-11 Score=122.75 Aligned_cols=134 Identities=25% Similarity=0.304 Sum_probs=112.0
Q ss_pred cccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCCC
Q 036714 503 DIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVPS 582 (932)
Q Consensus 503 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 582 (932)
.++.+|. .+..+++|++|++++| .+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++| .++.+|.
T Consensus 36 ~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~ 110 (198)
T 1ds9_A 36 PIEKMDA-TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG 110 (198)
T ss_dssp TCCCCHH-HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH
T ss_pred cHhhhhH-HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc
Confidence 3444433 4567899999999999 777788 358899999999999999999988888999999999997 4667788
Q ss_pred hhccccCcEeecccCCCccccc--ccccCCCCCEEeCCCCCCcccCCC----------ccCCCCCcceEEe
Q 036714 583 LAKLLALQYLDLEETGIEEVPE--GMEMLENLSHLYLSSPRLKKFPTG----------ILPRLRNLYKLKL 641 (932)
Q Consensus 583 ~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~~p~~----------~l~~l~~L~~L~l 641 (932)
+.++++|++|++++|.+..+|. .+..+++|++|++++|.+...++. ++..+++|+.|+-
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 9999999999999999998765 788999999999999997554322 3678999999973
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=1.8e-09 Score=105.15 Aligned_cols=97 Identities=23% Similarity=0.411 Sum_probs=61.1
Q ss_pred eEEEccCCCCcccCccccccccccccccccccccCCCC-ChhccccCcEeecccCCCccccccc-ccCCCCCEEeCCCCC
Q 036714 544 KVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP-SLAKLLALQYLDLEETGIEEVPEGM-EMLENLSHLYLSSPR 621 (932)
Q Consensus 544 ~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~ 621 (932)
+.++++++.+..+|..+. .+|++|+|++|..-...| .|.++++|++|++++|.++.+|..+ ..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665443 566666666644322223 4666667777777777666666543 566777777777777
Q ss_pred CcccCCCccCCCCCcceEEee
Q 036714 622 LKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 622 l~~~p~~~l~~l~~L~~L~l~ 642 (932)
+..+|.+.+..+++|++|+++
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECC
T ss_pred cceeCHHHhccccCCCEEEeC
Confidence 776666656667777777766
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=2e-09 Score=104.41 Aligned_cols=98 Identities=23% Similarity=0.429 Sum_probs=71.3
Q ss_pred eeEEEccCCCCcccCccccccccccccccccccccCCC-C-ChhccccCcEeecccCCCcccccc-cccCCCCCEEeCCC
Q 036714 543 LKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERV-P-SLAKLLALQYLDLEETGIEEVPEG-MEMLENLSHLYLSS 619 (932)
Q Consensus 543 L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l-p-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~ 619 (932)
.+.++++++.++.+|..+. .+|++|+|++|. ++.+ | .|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567777777777776553 677777777754 3444 4 477788888888888888777665 36788888888888
Q ss_pred CCCcccCCCccCCCCCcceEEeec
Q 036714 620 PRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 620 ~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
|.++.+|.+.+..+++|++|+++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCC
Confidence 888888777677888888888873
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=1.9e-09 Score=104.85 Aligned_cols=104 Identities=26% Similarity=0.401 Sum_probs=76.5
Q ss_pred eEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-CccccccccccccccccccccCCCC-C-hhccccCcEeecc
Q 036714 519 STLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLRWCENLERVP-S-LAKLLALQYLDLE 595 (932)
Q Consensus 519 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp-~-~~~l~~L~~L~l~ 595 (932)
+.++++++ .+..+|..+ .++|++|+|++|.++.+ |..+..+++|++|+|++| .++.+| . |.++++|++|+++
T Consensus 15 ~~l~~~~n-~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCC-CCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 45666666 666677644 26677788888877766 456677888888888875 455566 3 6788888888888
Q ss_pred cCCCcccccc-cccCCCCCEEeCCCCCCcccCC
Q 036714 596 ETGIEEVPEG-MEMLENLSHLYLSSPRLKKFPT 627 (932)
Q Consensus 596 ~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~ 627 (932)
+|.++.+|.. +..+++|++|++++|.+...+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8888888775 7888889999998887665443
No 152
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.86 E-value=8.9e-09 Score=111.57 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=101.9
Q ss_pred cccccccchHHHHHHHHHHhc-----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHH
Q 036714 133 MATLAGEKTKKVVEEIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQT 207 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 207 (932)
...++|+ +..+..+..++. ......|.|+|++|+|||++|+.+++... . ...++..+......++..
T Consensus 11 ~~~~ig~--~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~---~---~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 11 LDEYIGQ--ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG---V---NLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp TTTCCSC--HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT---C---CEEEECTTTCCSHHHHHH
T ss_pred HHHhhCH--HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC---C---CEEEEeccccCChHHHHH
Confidence 3679998 556666665553 23346788999999999999999998762 1 233444333222211111
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCC--------CCC----------CCCCc
Q 036714 208 EIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIP--------EPS----------EENGC 267 (932)
Q Consensus 208 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~--------~~~----------~~~gs 267 (932)
.+ ... ..++.+|+||++.... ....+... ... ...+.
T Consensus 83 ----~l------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 83 ----IL------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ----HH------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ----HH------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 11 000 1345688999997532 11111000 000 01245
Q ss_pred EEEEEeCCcc-c----cccccceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhhh
Q 036714 268 KLVVTTRSVG-I----CRSMGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGCM 341 (932)
Q Consensus 268 ~iivTTR~~~-v----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 341 (932)
.+|.||.... + ...+ ...+.+.+++.++...++.+.+....... ..+....+++.++|.|..+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~-~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRF-GIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTC-SCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcc-cEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6777766432 2 1222 12389999999999999988765432212 24667889999999998887665543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=6.1e-09 Score=100.93 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=59.9
Q ss_pred eEEEeecCCCccCCChhhhccCCceeEEEccCCCCccc-CccccccccccccccccccccCCCC--ChhccccCcEeecc
Q 036714 519 STLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVL-PSSVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLE 595 (932)
Q Consensus 519 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~ 595 (932)
+++++++| .+..+|..+ .+.|++|+|++|.++.+ |..+..+++|++|+|++|. ++.+| .|.++++|++|+++
T Consensus 12 ~~l~~s~n-~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 34555554 445555433 24556666666666655 3445566666666666543 44444 25666677777777
Q ss_pred cCCCcccccc-cccCCCCCEEeCCCCCCccc
Q 036714 596 ETGIEEVPEG-MEMLENLSHLYLSSPRLKKF 625 (932)
Q Consensus 596 ~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~ 625 (932)
+|.++.+|.. +..+++|++|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7777766653 56677777777777765543
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=2.8e-09 Score=115.75 Aligned_cols=165 Identities=17% Similarity=0.202 Sum_probs=112.9
Q ss_pred ccCCCcCCC--------CCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-ccccccccccccccc---
Q 036714 506 EIPSYMSPH--------CDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRW--- 573 (932)
Q Consensus 506 ~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~--- 573 (932)
.+|...|.+ |++|+.|.+.+ .+..++...|.++++|+.|++++|.+..++. .+..+.++.++.+..
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence 456667777 88888888876 5677777778888888888888887765543 344455555554432
Q ss_pred --------------ccccC---------CCC----------------------------Ch-hccccCcEeecccCCCcc
Q 036714 574 --------------CENLE---------RVP----------------------------SL-AKLLALQYLDLEETGIEE 601 (932)
Q Consensus 574 --------------~~~l~---------~lp----------------------------~~-~~l~~L~~L~l~~~~i~~ 601 (932)
|..++ .++ .+ ..+.+|+.+++++|.++.
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce
Confidence 11111 000 00 126789999999888888
Q ss_pred cccc-cccCCCCCEEeCCCCCCcccCCCccCCCCCcc-eEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhh
Q 036714 602 VPEG-MEMLENLSHLYLSSPRLKKFPTGILPRLRNLY-KLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFN 676 (932)
Q Consensus 602 lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~-~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~ 676 (932)
+|.. +..+.+|+.|++..| +..++.+.|.++++|+ .+.+.. ....+....+..+ .+|+.+++..+.+..++
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c-~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGC-DNLRYVLATGDKITTLG 313 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTC-TTEEEEEECSSCCCEEC
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCC-ccCCEEEeCCCccCccc
Confidence 8764 678888999999887 8888888888999998 888872 4445555566676 88888888766655443
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=3.3e-08 Score=109.73 Aligned_cols=154 Identities=12% Similarity=0.154 Sum_probs=75.5
Q ss_pred ccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccC-ccccccccccccccccccccCCCC-
Q 036714 504 IEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLP-SSVSDLMNLRSLLLRWCENLERVP- 581 (932)
Q Consensus 504 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp- 581 (932)
++.++...|.+| +|+.+.+..+ +..++...|.++ .|+.+.+.. .+..++ ..+..|.+|+.+++.+| .++.+|
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~ 197 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPA 197 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECT
T ss_pred cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEech
Confidence 445555555554 4555555443 455555555553 455555554 344443 23445555666665542 344444
Q ss_pred -ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHH
Q 036714 582 -SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLS 659 (932)
Q Consensus 582 -~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 659 (932)
.|. ..+|+.+.+.. .++.++. .+..+++|+.+.+..+ +..++...|.+ .+|+.+.+. +.........+..+
T Consensus 198 ~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~aF~~c- 270 (401)
T 4fdw_A 198 STFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP--NGVTNIASRAFYYC- 270 (401)
T ss_dssp TTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE--TTCCEECTTTTTTC-
T ss_pred hhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC--CCccEEChhHhhCC-
Confidence 233 35555555543 2444432 3445555666665542 45555554544 455555554 22222333334444
Q ss_pred hccceeEEEec
Q 036714 660 DRLDTFEGIFS 670 (932)
Q Consensus 660 ~~L~~L~l~~~ 670 (932)
.+|+.+.+..+
T Consensus 271 ~~L~~l~l~~~ 281 (401)
T 4fdw_A 271 PELAEVTTYGS 281 (401)
T ss_dssp TTCCEEEEESS
T ss_pred CCCCEEEeCCc
Confidence 55666655543
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=1.9e-08 Score=108.88 Aligned_cols=184 Identities=16% Similarity=0.202 Sum_probs=110.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
..++|+ +..++.+..++..+..+.+.|+|++|+||||+|+.+++...... ....+++++.++......+ .++++.+
T Consensus 21 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGN--KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp GGCCSC--THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred HHHHCC--HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChHHH-HHHHHHH
Confidence 679999 66888898888877665699999999999999999998863211 1112344443333232222 2222211
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCcc-ccccc--cceeEe
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVG-ICRSM--GCKEVR 288 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~--~~~~~~ 288 (932)
..... .+..+++.++|+||++.. ...+.+...+.....++.+|+||+... +.... ....++
T Consensus 97 ~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 97 AQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred Hhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 10000 000345889999999863 223333222222235678888886632 21111 122389
Q ss_pred ccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHH-HHHHH
Q 036714 289 VQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLA-IVTVA 338 (932)
Q Consensus 289 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla-i~~~~ 338 (932)
+.+++.++..+++...+..... .-..+.+..|++.++|.|.. +..+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999886542211 11245678899999999954 44443
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=3.2e-07 Score=101.78 Aligned_cols=267 Identities=12% Similarity=0.096 Sum_probs=168.8
Q ss_pred CCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCccccccccccccccccccccCCCC--ChhccccCc
Q 036714 513 PHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPSSVSDLMNLRSLLLRWCENLERVP--SLAKLLALQ 590 (932)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~ 590 (932)
..+..++.+.+.. .+..++...|.++ +|+.+.+..+ ++.++.....-.+|+.+.+.. .++.++ .|.++.+|+
T Consensus 110 ~~~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred EecCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCC
Confidence 3456777777765 4777888888886 7999999876 777765433335799999985 566666 599999999
Q ss_pred EeecccCCCcccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEec
Q 036714 591 YLDLEETGIEEVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFS 670 (932)
Q Consensus 591 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 670 (932)
.+++.+|.++.+|.......+|+.+.+..+ +..++...|.++++|+.+.+.. +........+.. .+|+.+.+.
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~--~~L~~i~lp-- 256 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE--SGITTVKLP-- 256 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT--CCCSEEEEE--
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc--CCccEEEeC--
Confidence 999999999999887666789999999844 8888888899999999998871 111111111111 122222221
Q ss_pred ChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCccccccc
Q 036714 671 TLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASLNDF 750 (932)
Q Consensus 671 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~ 750 (932)
.+++.+. ......
T Consensus 257 ------------------------------------------------------------~~i~~I~-------~~aF~~ 269 (401)
T 4fdw_A 257 ------------------------------------------------------------NGVTNIA-------SRAFYY 269 (401)
T ss_dssp ------------------------------------------------------------TTCCEEC-------TTTTTT
T ss_pred ------------------------------------------------------------CCccEEC-------hhHhhC
Confidence 0111110 000011
Q ss_pred cCCccEEEEecCCCC----cccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeecc
Q 036714 751 SHDLKVLRFDSCKNL----KNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLW 826 (932)
Q Consensus 751 ~~~L~~L~L~~c~~l----~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~ 826 (932)
+++|+.+.+.++... ..++ ...+..|++|+.+.+.+ .++.+.... +.++++|+.+.|.
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~-~~aF~~c~~L~~l~l~~--~i~~I~~~a---------------F~~c~~L~~l~lp 331 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIH-PYCLEGCPKLARFEIPE--SIRILGQGL---------------LGGNRKVTQLTIP 331 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEEC-TTTTTTCTTCCEECCCT--TCCEECTTT---------------TTTCCSCCEEEEC
T ss_pred CCCCCEEEeCCccccCCcccEEC-HHHhhCCccCCeEEeCC--ceEEEhhhh---------------hcCCCCccEEEEC
Confidence 267777777664321 1232 34567888999888873 466665432 5678899999996
Q ss_pred CCcccccccCCCCcccCCCccEEEecccCCCccccCCCcccCCCCCCCC-CCcceEecchhhhh
Q 036714 827 GLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPP-PTLEVIKMEKELWE 889 (932)
Q Consensus 827 ~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~-~~L~~l~~~~~~~~ 889 (932)
+ +++.+... ....+ +|+.+.+.+. .+..++.+. -..+ ..+..|++.....+
T Consensus 332 ~--~l~~I~~~-aF~~~-~L~~l~l~~n-~~~~l~~~~-------F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 332 A--NVTQINFS-AFNNT-GIKEVKVEGT-TPPQVFEKV-------WYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T--TCCEECTT-SSSSS-CCCEEEECCS-SCCBCCCSS-------CCCSCTTCCEEEECGGGHH
T ss_pred c--cccEEcHH-hCCCC-CCCEEEEcCC-CCccccccc-------ccCCCCCccEEEeCHHHHH
Confidence 5 47776552 23345 8999998875 444444321 1123 25677777665443
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=2.7e-08 Score=107.94 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=118.7
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCC-------c---------
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNI-------K--------- 554 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-------~--------- 554 (932)
..+++.+.+.. .++.++...|.+|++|+.|.+.+| .+..++...|.++..+..+.+..+.. .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 45788888887 788888888999999999999988 66677777777777777776554110 0
Q ss_pred -----------ccCccc----------------------------cccccccccccccccccCCCC--ChhccccCcEee
Q 036714 555 -----------VLPSSV----------------------------SDLMNLRSLLLRWCENLERVP--SLAKLLALQYLD 593 (932)
Q Consensus 555 -----------~lp~~i----------------------------~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~ 593 (932)
.+|..+ ..+++|+.|+|++|. ++.+| .|.++.+|+.++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEE
Confidence 000000 026788888888754 66666 588888888888
Q ss_pred cccCCCccccc-ccccCCCCC-EEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeE
Q 036714 594 LEETGIEEVPE-GMEMLENLS-HLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFE 666 (932)
Q Consensus 594 l~~~~i~~lp~-~~~~l~~L~-~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~ 666 (932)
+.++ ++.++. .+..+.+|+ .+++.. .+..++.+.|.+|++|+.+++. .+.........+..+ .+|+.+.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~-~n~i~~I~~~aF~~~-~~L~~ly 327 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT-GDKITTLGDELFGNG-VPSKLIY 327 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC-SSCCCEECTTTTCTT-CCCCEEE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC-CCccCccchhhhcCC-cchhhhc
Confidence 8876 777754 467788888 888877 6778887778888888888885 234444444455555 6776654
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=4.1e-08 Score=106.45 Aligned_cols=185 Identities=13% Similarity=0.158 Sum_probs=110.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATAL 213 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 213 (932)
..++|+ ++.++.+..++..+..+.+.|+|++|+||||+|+.+++..... ..-...+.+..++......+. ......
T Consensus 25 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 100 (327)
T 1iqp_A 25 DDIVGQ--EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEF 100 (327)
T ss_dssp TTCCSC--HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTH-HHHHHH
T ss_pred HHhhCC--HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHHHH-HHHHHH
Confidence 679998 6788888888877766669999999999999999999986211 100113333333211111110 000000
Q ss_pred hccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCcc-ccccc--cceeEe
Q 036714 214 KQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVG-ICRSM--GCKEVR 288 (932)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~--~~~~~~ 288 (932)
... ..+..+++.++|+||++.. .....+...+.....++++|+||+... +.... ....++
T Consensus 101 ~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 101 ART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred Hhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 000 0011256889999999863 223333222222245678888887643 21111 112389
Q ss_pred ccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHhh
Q 036714 289 VQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAGC 340 (932)
Q Consensus 289 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 340 (932)
+.+++.++...++...+..... .-..+..+.|++.++|.|..+..+...
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999887654322 123466788999999999876554443
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.6e-07 Score=97.54 Aligned_cols=170 Identities=9% Similarity=0.093 Sum_probs=102.8
Q ss_pred ccccccchHHHHHHHHHHh----cCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCC--C--cEEEEEEECCccCHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK--F--NVVIWVTVSQPLYLIKL 205 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f--~~~~wv~~s~~~~~~~~ 205 (932)
..+.|| ++++++|...| .++..+.+.|+|++|+|||++|+.+++........ . -.++.+++....+...+
T Consensus 20 ~~L~~R--e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQ--VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred cccCCH--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 347888 66777766555 45678899999999999999999999998432211 1 13566676677778888
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHH--hcCCeEEEEEeccccccc---cccccCCCCCCCCCcEEEEEeCCcccc-
Q 036714 206 QTEIATALKQSLLENEDKVRRAGELLGML--KAKEKFVLILDDMWEAFR---LEEVGIPEPSEENGCKLVVTTRSVGIC- 279 (932)
Q Consensus 206 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~iivTTR~~~v~- 279 (932)
...|++++.................+... ..+++++++||+++...+ +..+............||.++...+..
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 89999998543211111223334444433 245789999999976421 111110000011122344445443221
Q ss_pred --------ccccceeEeccCCCHHHHHHHHHHhh
Q 036714 280 --------RSMGCKEVRVQPLSNEEALNLFLDKV 305 (932)
Q Consensus 280 --------~~~~~~~~~l~~L~~~~~~~lf~~~~ 305 (932)
..++...+.+.+.+.++-.+++.+++
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 23333348999999999999998865
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=5.4e-07 Score=100.28 Aligned_cols=132 Identities=18% Similarity=0.276 Sum_probs=83.6
Q ss_pred cccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-cccccccccccccccccccCCCC
Q 036714 503 DIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRWCENLERVP 581 (932)
Q Consensus 503 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp 581 (932)
.+.++....|.+|.+|+.+.+.. .+..++...|.++.+|+.+++..+ ++.++. .+..+.+|+.+.+..+ +..++
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeec
Confidence 35667778888999999999874 477888888899999999998754 555543 4566777777766532 33333
Q ss_pred --ChhccccCcEeecccCCCccc-ccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 582 --SLAKLLALQYLDLEETGIEEV-PEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 582 --~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
.|.++..+....... +..+ ...+..+++|+.+.+..+ +..++.+.+.++.+|+.+.+.
T Consensus 133 ~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcC
Confidence 344444333332221 2222 124556677777777543 455666666777777776664
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=5.8e-08 Score=106.25 Aligned_cols=95 Identities=25% Similarity=0.311 Sum_probs=56.4
Q ss_pred EEccCC-CCcccCccccccccccccccccccccCCCC--ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCC
Q 036714 546 LNLSRT-NIKVLPSSVSDLMNLRSLLLRWCENLERVP--SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPR 621 (932)
Q Consensus 546 L~L~~~-~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 621 (932)
++++++ .++.+|. +..+.+|++|+|++++.++.+| .|++|.+|++|+|++|.|+.+|+ .+..|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 355555 5555665 5556666666665423344444 36666666666666666665544 34666666666666666
Q ss_pred CcccCCCccCCCCCcceEEee
Q 036714 622 LKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 622 l~~~p~~~l~~l~~L~~L~l~ 642 (932)
+..+|.+++..++ |+.|++.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECC
T ss_pred cceeCHHHcccCC-ceEEEee
Confidence 6666666555554 6666666
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.54 E-value=5.1e-07 Score=97.32 Aligned_cols=181 Identities=12% Similarity=0.176 Sum_probs=110.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCc-EEEEEEECCccCHHHHHHHHHH
Q 036714 133 MATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLYLIKLQTEIAT 211 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~ 211 (932)
...++|+ +..++.+..++..+..+.+.++|++|+|||++|+.+++.... ..+. .++.++.+.......+.. +
T Consensus 16 ~~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~-~-- 88 (319)
T 2chq_A 16 LDEVVGQ--DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG--ENWRDNFIEMNASDERGIDVVRH-K-- 88 (319)
T ss_dssp GGGSCSC--HHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT--TCHHHHCEEEETTSTTCTTTSSH-H--
T ss_pred HHHHhCC--HHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC--CcccCCeEEEeCccccChHHHHH-H--
Confidence 3679998 678888888888776666999999999999999999987521 1111 123333333211111100 0
Q ss_pred HHhccccccchHHHHHHHHHHH--HhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCcc-ccccc--cc
Q 036714 212 ALKQSLLENEDKVRRAGELLGM--LKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVG-ICRSM--GC 284 (932)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~l~~~--l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~--~~ 284 (932)
....... +..+++.++|+|+++.. ...+.+...+.....++++|+||.... +.... ..
T Consensus 89 ---------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 89 ---------------IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp ---------------HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred ---------------HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 0000000 11256889999999763 223334433433345677888876543 21111 12
Q ss_pred eeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 285 KEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 285 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
..+++.+++.++...++...+..... .-..+....+++.++|.+..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23899999999999999887654322 1234567888899999997654443
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=1.2e-07 Score=103.61 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=61.4
Q ss_pred EEeecCCCccCCChhhhccCCceeEEEccC-CCCcccC-ccccccccccccccccccccCCC-C-ChhccccCcEeeccc
Q 036714 521 LLLQANGNLWTIPECFFVYMHGLKVLNLSR-TNIKVLP-SSVSDLMNLRSLLLRWCENLERV-P-SLAKLLALQYLDLEE 596 (932)
Q Consensus 521 L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~l-p-~~~~l~~L~~L~l~~ 596 (932)
++++++..+..+|. +..+.+|++|+|++ |.+..+| ..++.+.+|++|+|++|. ++.+ | .|.+|++|++|+|++
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 34444334555665 45666666666664 6666655 346666677777776654 3333 3 467777777777777
Q ss_pred CCCcccccccccCCCCCEEeCCCCCCc
Q 036714 597 TGIEEVPEGMEMLENLSHLYLSSPRLK 623 (932)
Q Consensus 597 ~~i~~lp~~~~~l~~L~~L~l~~~~l~ 623 (932)
|.+..+|..+....+|+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 777777665544334777777777654
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=2.6e-08 Score=109.46 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=25.8
Q ss_pred ccceeecccccccccC-----CCcCCCCCCceEEEeecCCCccCC-ChhhhccCCceeEEEccCCCCc
Q 036714 493 NLERVSLMMNDIEEIP-----SYMSPHCDILSTLLLQANGNLWTI-PECFFVYMHGLKVLNLSRTNIK 554 (932)
Q Consensus 493 ~~~~l~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~ 554 (932)
.++.+++++|.+.... ......+++|+.|++++| .+... ...+...+++|+.|+|++|.+.
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 3555666555544321 111112245555555555 22211 1122223445555555555544
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=1.1e-08 Score=112.55 Aligned_cols=156 Identities=20% Similarity=0.206 Sum_probs=97.9
Q ss_pred CCceEEEeecCCCccCCChhhhc-----cCCceeEEEccCCCCcc--cCccccccccccccccccccccCCCC--Ch---
Q 036714 516 DILSTLLLQANGNLWTIPECFFV-----YMHGLKVLNLSRTNIKV--LPSSVSDLMNLRSLLLRWCENLERVP--SL--- 583 (932)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~L~~~~~l~~lp--~~--- 583 (932)
++|+.|++++| .+.......+. ..++|+.|+|++|.+.. +..-...+.+|++|+|++|. ++..+ .+
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 56788888888 44433222222 23688888888888763 22222346778888888864 33222 22
Q ss_pred --hccccCcEeecccCCCcc-----cccccccCCCCCEEeCCCCCCcccC----CCccCCCCCcceEEeecCCchhhhcH
Q 036714 584 --AKLLALQYLDLEETGIEE-----VPEGMEMLENLSHLYLSSPRLKKFP----TGILPRLRNLYKLKLSFGNEALRETV 652 (932)
Q Consensus 584 --~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~~~p----~~~l~~l~~L~~L~l~~~~~~~~~~~ 652 (932)
...++|++|++++|.+.. ++..+..+++|++|++++|.+.... ...+...++|++|++++| .+.....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHH
Confidence 234678888888887764 4555567788888888888866422 112466778888888843 4444333
Q ss_pred H----HHHHHHhccceeEEEecChhhh
Q 036714 653 E----EAARLSDRLDTFEGIFSTLNDF 675 (932)
Q Consensus 653 ~----~l~~l~~~L~~L~l~~~~~~~~ 675 (932)
. .+... ++|+.|+++.|.+...
T Consensus 229 ~~l~~~L~~~-~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 229 LALARAAREH-PSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHC-SSCCEEECTTSSCCHH
T ss_pred HHHHHHHHhC-CCCCEEeccCCCCCHH
Confidence 2 33344 7788888888877543
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.38 E-value=6.4e-07 Score=88.42 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=41.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..++|| ++.++++.+.+.....+.+.|+|++|+|||++|+.+++...
T Consensus 22 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 22 DPVIGR--DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccc--hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 568999 77889999998877677889999999999999999999863
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.36 E-value=1.2e-06 Score=96.81 Aligned_cols=192 Identities=16% Similarity=0.213 Sum_probs=105.4
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
..++|+ +..++.+...+..+. .+.+.|+|++|+||||+|+.+++...... .+. ..++..-.....+...
T Consensus 16 ~~~vg~--~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~-------~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 16 ADVVGQ--EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GIT-------ATPCGVCDNCREIEQG 85 (373)
T ss_dssp TTSCSC--HHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSC-------SSCCSSSHHHHHHHTS
T ss_pred hhccCc--HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCC-------CCCCcccHHHHHHhcc
Confidence 569999 677888888876554 46789999999999999999998763211 110 0000000000011000
Q ss_pred Hhccc---c-ccchHHHHHHHHHHHHh----cCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCcc-cccc
Q 036714 213 LKQSL---L-ENEDKVRRAGELLGMLK----AKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVG-ICRS 281 (932)
Q Consensus 213 l~~~~---~-~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~ 281 (932)
-..+. . ...........+...+. .+++.++|+||++.. ...+.+...+.....+..+|++|.... +...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 00000 0 00000011122222221 346789999999753 223333222222234566777776432 2111
Q ss_pred c--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 282 M--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 282 ~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
. ....+++.+++.++...++.+.+..... ....+.+..|++.++|.|..+..+.
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 1223899999999999999876532211 1124567889999999998876554
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.33 E-value=2.5e-05 Score=81.81 Aligned_cols=177 Identities=13% Similarity=0.137 Sum_probs=93.5
Q ss_pred CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Q 036714 154 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGM 233 (932)
Q Consensus 154 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 233 (932)
....+.+.|+|++|+|||++|+.+++... .. .+.+..+... .+. ............+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~---~~---~~~i~~~~~~------------~g~---~~~~~~~~~~~~~~~ 119 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN---FP---FIKICSPDKM------------IGF---SETAKCQAMKKIFDD 119 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT---CS---EEEEECGGGC------------TTC---CHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC---CC---EEEEeCHHHh------------cCC---chHHHHHHHHHHHHH
Confidence 44578899999999999999999999751 12 1222222110 000 001111222333443
Q ss_pred HhcCCeEEEEEeccccc---------------cccccccCCCCCCCCCcEEEEEeCCcccccc---cc--ceeEeccCCC
Q 036714 234 LKAKEKFVLILDDMWEA---------------FRLEEVGIPEPSEENGCKLVVTTRSVGICRS---MG--CKEVRVQPLS 293 (932)
Q Consensus 234 l~~~kr~LlVlDdv~~~---------------~~~~~l~~~~~~~~~gs~iivTTR~~~v~~~---~~--~~~~~l~~L~ 293 (932)
....+..+|+|||++.. ..+..+............||.||...+.... .+ ...+.+++++
T Consensus 120 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 120 AYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp HHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE
T ss_pred HHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc
Confidence 43467899999998652 1111222111112233456667776532211 11 1228899998
Q ss_pred H-HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCC------CcHHHHHHHhhhcCCCchHHHHHHHHHHhcc
Q 036714 294 N-EEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAG------LPLAIVTVAGCMRGVDEIHEWRNALNELRGR 360 (932)
Q Consensus 294 ~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G------~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~ 360 (932)
. ++...++.+... . ..+....|++.+.| +.-++..+-.+. .......+..++..+...
T Consensus 200 ~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~-~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 200 TGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL-QMDPEYRVRKFLALLREE 264 (272)
T ss_dssp EHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT-TSCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh-hhchHHHHHHHHHHHHHc
Confidence 8 666666655321 1 23557778888887 334444433332 223345666666665543
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=2e-06 Score=94.11 Aligned_cols=192 Identities=13% Similarity=0.157 Sum_probs=108.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhc-cCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKE-TNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
..++|+ ++.++.+..++..+..+.+.|+|++|+||||+|+.+++..... ...+ .+..+..++......+. +....
T Consensus 37 ~~i~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~ 112 (353)
T 1sxj_D 37 DEVTAQ--DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVR-EKVKN 112 (353)
T ss_dssp TTCCSC--CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHT-THHHH
T ss_pred HHhhCC--HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHH-HHHHH
Confidence 678998 5578888888887765559999999999999999999885311 0111 23334444333333222 11111
Q ss_pred Hhcc-ccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCCCCCCCCCcEEEEEeCCcc-cccccc--cee
Q 036714 213 LKQS-LLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIPEPSEENGCKLVVTTRSVG-ICRSMG--CKE 286 (932)
Q Consensus 213 l~~~-~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~~--~~~ 286 (932)
.... ....... .......+++-+|++|++.... ....+...+.......++|++|.... +..... ...
T Consensus 113 ~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 113 FARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred Hhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 1110 0000000 0001112356799999987531 22222222211223556777775432 222111 123
Q ss_pred EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 287 VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 287 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
+.+.+++.++....+...+....... ..+..+.|++.++|.|..+..+.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKC---DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999988764432212 24677889999999998754443
No 171
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=5.1e-07 Score=86.04 Aligned_cols=92 Identities=10% Similarity=0.118 Sum_probs=69.1
Q ss_pred CCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccc----cCccceeeccC
Q 036714 752 HDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVT----LPRLKKFYLWG 827 (932)
Q Consensus 752 ~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~p~L~~L~L~~ 827 (932)
.+|++|++++|. +++. .+..+..+++|+.|+|++|..+++..... +.. .++|++|+|++
T Consensus 61 ~~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~---------------L~~~~~~~~~L~~L~Ls~ 123 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLER---------------LSQLENLQKSMLEMEIIS 123 (176)
T ss_dssp CCEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHH---------------HHTCHHHHHHCCEEEEES
T ss_pred ceEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHH---------------HHhcccccCCCCEEEcCC
Confidence 479999999997 6663 34456789999999999998877643211 222 36899999999
Q ss_pred CcccccccCCCCcccCCCccEEEecccCCCcccc
Q 036714 828 LREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLS 861 (932)
Q Consensus 828 ~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp 861 (932)
|+++++-... ....+++|++|++++|++++...
T Consensus 124 C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 124 CGNVTDKGII-ALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp CTTCCHHHHH-HGGGCTTCCEEEEESCTTCCCHH
T ss_pred CCcCCHHHHH-HHhcCCCCCEEECCCCCCCCchH
Confidence 9998874331 12358999999999999998753
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.21 E-value=4.9e-07 Score=93.04 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=101.2
Q ss_pred ccccccc-hHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEK-TKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~-~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
..++|.+ .+..++.+..+...+..+.+.|+|++|+||||+|+.+++..... ...+.|+.+++.... +
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~------~--- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI------S--- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS------C---
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH------H---
Confidence 5677742 24566677777666567889999999999999999999987322 234566665432110 0
Q ss_pred HhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc----cccccCCCCC-CCCC-cEEEEEeCCcc-----c---
Q 036714 213 LKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR----LEEVGIPEPS-EENG-CKLVVTTRSVG-----I--- 278 (932)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~g-s~iivTTR~~~-----v--- 278 (932)
.. ..+.+ .++.+||+||++.... .+.+...+.. ...+ .++|+||+... .
T Consensus 96 -----~~----------~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 96 -----TA----------LLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp -----GG----------GGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred -----HH----------HHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 00 00111 3457899999975321 1212111100 0112 24788776432 1
Q ss_pred -cccccc-eeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 279 -CRSMGC-KEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 279 -~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
...+.. ..+++.+++.++..+++...+..... .-..+..+.+++.++|.+..+..+.
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 111111 23899999999999999887643221 1234567788899999887665443
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.20 E-value=9e-06 Score=91.17 Aligned_cols=184 Identities=15% Similarity=0.218 Sum_probs=105.1
Q ss_pred cccc-ccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHH
Q 036714 134 ATLA-GEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIAT 211 (932)
Q Consensus 134 ~~~v-Gr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 211 (932)
..|+ |.........+........ ...+.|+|++|+||||||+.+++......... .+++++.. .+..++..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~-~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS-CEEEEEHH------HHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-eEEEeeHH------HHHHHHHH
Confidence 4565 7544444555555554433 67899999999999999999999874321122 34555432 23344444
Q ss_pred HHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----ccccccCCCCC-CCCCcEEEEEeCCcc-----c---
Q 036714 212 ALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----RLEEVGIPEPS-EENGCKLVVTTRSVG-----I--- 278 (932)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~iivTTR~~~-----v--- 278 (932)
.+.... .......+ ..+.-+|++||++... ..+.+...+.. ...|..||+||.... +
T Consensus 178 ~~~~~~---------~~~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 178 SMKEGK---------LNEFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHTTC---------HHHHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHccc---------HHHHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 433210 11122222 3256799999997532 11222211110 134677888887621 1
Q ss_pred -ccccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 279 -CRSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 279 -~~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
...+.... +.+++++.++...++.+.+.......+ .++...|++.++|.+-.+.-+
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 11232223 889999999999999887642221122 234677888999988655443
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=1.3e-05 Score=84.72 Aligned_cols=176 Identities=15% Similarity=0.168 Sum_probs=98.7
Q ss_pred cccccccchHHHHHHHHHHhcC-------------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 133 MATLAGEKTKKVVEEIWEDLMG-------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
...++|. ++.++.|.+.+.. ...+-+.|+|++|+|||+||+.+++... . ..+.+..+.-
T Consensus 16 ~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~---~---~~~~v~~~~~ 87 (285)
T 3h4m_A 16 YEDIGGL--EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN---A---TFIRVVGSEL 87 (285)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT---C---EEEEEEGGGG
T ss_pred HHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---C---CEEEEehHHH
Confidence 3678998 6666666665532 3456799999999999999999998752 1 2233332221
Q ss_pred cCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------------ccccccCCCC--
Q 036714 200 LYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------------RLEEVGIPEP-- 261 (932)
Q Consensus 200 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~-- 261 (932)
.. .. ...........+......++.+|+|||++... .+..+...+.
T Consensus 88 ~~--------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 VK--------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CC--------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HH--------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 11 00 01111223333344445567899999996420 1111111110
Q ss_pred CCCCCcEEEEEeCCccccc-----ccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCC-cHHH
Q 036714 262 SEENGCKLVVTTRSVGICR-----SMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGL-PLAI 334 (932)
Q Consensus 262 ~~~~gs~iivTTR~~~v~~-----~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai 334 (932)
....+..||.||...+... ...... +.++..+.++..+++...+......... ....+++.+.|. |-.+
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV----NLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTTCCHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCCCCHHHH
Confidence 1234567777887543322 112222 8999999999999999877543321111 245677777773 4344
Q ss_pred HH
Q 036714 335 VT 336 (932)
Q Consensus 335 ~~ 336 (932)
..
T Consensus 228 ~~ 229 (285)
T 3h4m_A 228 KA 229 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 175
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.18 E-value=9.2e-06 Score=90.26 Aligned_cols=320 Identities=13% Similarity=0.089 Sum_probs=180.6
Q ss_pred ccccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-ccccccccccc
Q 036714 491 KANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSL 569 (932)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L 569 (932)
..+++.+.+.. .++.++...|.+|++|+.+.+..+ +..++...|.++..|+.+.+..+ +..+.. .+..+..+...
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 35688888864 488888899999999999999764 77888888899999998777654 333332 23334333322
Q ss_pred ccccccccCCCC--ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCc
Q 036714 570 LLRWCENLERVP--SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNE 646 (932)
Q Consensus 570 ~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 646 (932)
... .+..++ .|.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++...+.++..|+.+.+.....
T Consensus 146 ~~~---~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 146 IPE---GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp CCT---TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred cCc---cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 222 223333 5888899999998654 444543 4567888999988765 6777777788888888877652111
Q ss_pred hhhhcHHHHHHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCc
Q 036714 647 ALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREET 726 (932)
Q Consensus 647 ~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 726 (932)
. ... ..... .+|+.+.+... ...+ . .........+..+.+......-....
T Consensus 221 ~--i~~-~~~~~-~~l~~i~ip~~-~~~i----~--------------------~~~f~~~~~l~~~~~~~~~~~i~~~~ 271 (394)
T 4fs7_A 221 Y--LGD-FALSK-TGVKNIIIPDS-FTEL----G--------------------KSVFYGCTDLESISIQNNKLRIGGSL 271 (394)
T ss_dssp E--ECT-TTTTT-CCCCEEEECTT-CCEE----C--------------------SSTTTTCSSCCEEEECCTTCEECSCT
T ss_pred E--eeh-hhccc-CCCceEEECCC-ceec----c--------------------cccccccccceeEEcCCCcceeeccc
Confidence 1 110 01111 45555554311 0000 0 00011111122222221111101112
Q ss_pred ccCCcccceeeEeccCCccccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhh
Q 036714 727 IVLPEDVQFLQMFEVSDVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKEL 806 (932)
Q Consensus 727 ~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 806 (932)
+..+..++................+.+|+.+.+.+. ++.+.. ..+..+.+|+.++|.+ .++.+....
T Consensus 272 F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~--i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~a-------- 338 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS--VKFIGE-EAFESCTSLVSIDLPY--LVEEIGKRS-------- 338 (394)
T ss_dssp TTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT--CCEECT-TTTTTCTTCCEECCCT--TCCEECTTT--------
T ss_pred cccccccceeccCceeeccccccccccccccccccc--cceech-hhhcCCCCCCEEEeCC--cccEEhHHh--------
Confidence 233344444433222111111223378888888653 555533 4567888999988853 466664332
Q ss_pred hccccccccccCccceeeccCCcccccccCCCCcccCCCccEEEecccCCCccccCCCcccCCCCCCCCCCcceE
Q 036714 807 ATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVI 881 (932)
Q Consensus 807 ~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l 881 (932)
+.++.+|+.+.+.. +++.+.. .....|++|+.+.+.+ .++.+.... ..|++|+.|
T Consensus 339 -------F~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~--~~~~~~~~F--------~~c~~L~~I 393 (394)
T 4fs7_A 339 -------FRGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELPK--RLEQYRYDF--------EDTTKFKWI 393 (394)
T ss_dssp -------TTTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEEG--GGGGGGGGB--------CTTCEEEEE
T ss_pred -------ccCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEECC--CCEEhhhee--------cCCCCCcEE
Confidence 55788899998864 3666654 1233467888888754 344443222 236677765
No 176
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.17 E-value=3.3e-05 Score=83.76 Aligned_cols=170 Identities=13% Similarity=0.102 Sum_probs=98.1
Q ss_pred cccccccchHHHHHHHHHHhc-----CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHH
Q 036714 133 MATLAGEKTKKVVEEIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQT 207 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 207 (932)
...++|+ +..++.+..++. ......|.|+|++|+|||++|+.+++... .. .+.++.+.......
T Consensus 28 ~~~iiG~--~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~---~~---~~~~~~~~~~~~~~--- 96 (338)
T 3pfi_A 28 FDGYIGQ--ESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS---AN---IKTTAAPMIEKSGD--- 96 (338)
T ss_dssp GGGCCSC--HHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT---CC---EEEEEGGGCCSHHH---
T ss_pred HHHhCCh--HHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC---CC---eEEecchhccchhH---
Confidence 3679998 556666666664 23456789999999999999999988751 22 22333222111111
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCC------------------CCCCCCCc
Q 036714 208 EIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIP------------------EPSEENGC 267 (932)
Q Consensus 208 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~------------------~~~~~~gs 267 (932)
....... ..+..+|+||++.... ....+... .....++.
T Consensus 97 -------------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 97 -------------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -------------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -------------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 1111111 2356788999997531 11111000 00011235
Q ss_pred EEEEEeCCccc-----cccccceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 268 KLVVTTRSVGI-----CRSMGCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 268 ~iivTTR~~~v-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
.+|.||..... ...+ ...+.+.+++.++...++.+.+..... ....+..+.|++.+.|.|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRF-GMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhc-CEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66666665322 1111 123899999999999999887643321 2234667888889999996655443
No 177
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.14 E-value=2.2e-05 Score=87.83 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=101.2
Q ss_pred ccccccchHHHH---HHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-cCHHHHHHHH
Q 036714 134 ATLAGEKTKKVV---EEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i 209 (932)
..++|. +..+ ..+...+..+..+.+.|+|++|+||||+|+.+++... .. ++.++.. .....+ +.+
T Consensus 26 ~~ivGq--~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~---~~-----f~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 26 AQYIGQ--QHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN---AD-----VERISAVTSGVKEI-REA 94 (447)
T ss_dssp TTCCSC--HHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT---CE-----EEEEETTTCCHHHH-HHH
T ss_pred HHhCCc--HHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC---CC-----eEEEEeccCCHHHH-HHH
Confidence 678998 4455 5667777777778899999999999999999998752 11 2222222 222222 111
Q ss_pred HHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEE-EeCCcc--ccccc--
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVV-TTRSVG--ICRSM-- 282 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TTR~~~--v~~~~-- 282 (932)
.. ........+++.+|++|+++.. ...+.+...+.. ....+|. ||.+.. +....
T Consensus 95 ~~-----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 IE-----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HH-----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHT
T ss_pred HH-----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhC
Confidence 11 1111112467899999999763 223333322221 2234444 444432 21111
Q ss_pred cceeEeccCCCHHHHHHHHHHhhCCCCC----CCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 283 GCKEVRVQPLSNEEALNLFLDKVGSSTL----QIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 283 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~----~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
....+.+.+++.++...++.+.+..... ....-..+..+.|++.++|.+..+..+.
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1123889999999999999887643110 0112245677888889999887665443
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=7.2e-06 Score=94.20 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=102.4
Q ss_pred ccccccchHHHHHHHHHHhcC-----------------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG-----------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 196 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 196 (932)
..++|+ +..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. .+ .++.++.
T Consensus 39 ~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~ 110 (516)
T 1sxj_A 39 QQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNA 110 (516)
T ss_dssp GGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECT
T ss_pred HHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeC
Confidence 679999 6778888888764 134789999999999999999999875 12 2444555
Q ss_pred CCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc-----cccccCCCCCCCCCcEEEE
Q 036714 197 SQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR-----LEEVGIPEPSEENGCKLVV 271 (932)
Q Consensus 197 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~iiv 271 (932)
+...... +....+........ .......... .....+++.+||+|+++.... +..+...+. ..+..||+
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIl 184 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLIL 184 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEE
T ss_pred CCcchHH-HHHHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEE
Confidence 5444332 22221111110000 0000000000 001135688999999975311 122211111 12334666
Q ss_pred EeCCcc---cccccc-ceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc-HHHHHH
Q 036714 272 TTRSVG---ICRSMG-CKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP-LAIVTV 337 (932)
Q Consensus 272 TTR~~~---v~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~ 337 (932)
++.... +..... ...+.+.+++.++..+.+.+.+.......+ .+....|++.++|.+ .++..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 655432 222111 123899999999999988876543222122 235778889999955 445444
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=1.2e-05 Score=87.82 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=102.4
Q ss_pred ccccccchHHHHHHHHHHh-cCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCC---Cc--------------------
Q 036714 134 ATLAGEKTKKVVEEIWEDL-MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FN-------------------- 189 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~-------------------- 189 (932)
..++|. +..++.+..++ ..+..+.+.|+|+.|+||||+|+.+++........ ++
T Consensus 14 ~~~vg~--~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHN--EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSC--HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCC--HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 678998 67888888888 66655459999999999999999999864211100 00
Q ss_pred EEEEEEECCcc-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--ccccccCCCCCCCCC
Q 036714 190 VVIWVTVSQPL-YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--RLEEVGIPEPSEENG 266 (932)
Q Consensus 190 ~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~g 266 (932)
..+.+..+... ......+++++.+.....-. .. . . ...+ .+++-++|+|++.... ....+...+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~---~-~-ls~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-FQ---D-S-KDGL-AHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcccc-cc---c-c-cccc-CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 01111111100 00001122222221110000 00 0 0 0001 2356799999997621 112222111111235
Q ss_pred cEEEEEeCCc-cccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHHh
Q 036714 267 CKLVVTTRSV-GICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVAG 339 (932)
Q Consensus 267 s~iivTTR~~-~v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 339 (932)
..+|++|... .+.... ....+++.+++.++....+...+.......+ ..+.+..|++.++|.+..+..+..
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6777777653 232211 1233899999999999999876633221111 035678899999999876655443
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.06 E-value=0.0001 Score=76.52 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=93.7
Q ss_pred ccccccch-HHHHHHHHHHhcC---------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
..++|.+. .+.+.+++.++.. ...+.|.|+|++|+|||++|+.+++... .. .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~---~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ---VP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT---CC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC---EEEechHHHHhh-
Confidence 56888733 2223333444332 2245688999999999999999999762 12 334444332110
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc-------------c----cccccCCCC--CCC
Q 036714 204 KLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF-------------R----LEEVGIPEP--SEE 264 (932)
Q Consensus 204 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~----~~~l~~~~~--~~~ 264 (932)
. ..........++.......+.+|++|+++... . +..+...+. ...
T Consensus 79 -------------~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 -------------I--GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp -------------S--TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred -------------c--cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 00111122233333334567899999997530 0 111111111 012
Q ss_pred CCcEEEEEeCCcccc-cc-c---ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH-HHHHH
Q 036714 265 NGCKLVVTTRSVGIC-RS-M---GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL-AIVTV 337 (932)
Q Consensus 265 ~gs~iivTTR~~~v~-~~-~---~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 337 (932)
.+..||.||...... .. . .... +.++..+.++-.+++...+..... ..........+++.+.|.+- .+..+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 345666677553321 11 1 1122 788899999999998876643221 12222345778888888764 44433
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.06 E-value=8.3e-05 Score=81.02 Aligned_cols=179 Identities=14% Similarity=0.130 Sum_probs=98.7
Q ss_pred cccccccchHHHHHHHHHHhc------------CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 133 MATLAGEKTKKVVEEIWEDLM------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
...++|. +..++.+.+.+. ....+.|.|+|++|+|||++|+.+++... ...+.++.+.-.
T Consensus 83 ~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~i~~~~l~ 154 (357)
T 3d8b_A 83 WEDIAGV--EFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG------ATFFSISASSLT 154 (357)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT------CEEEEEEGGGGC
T ss_pred HHHhCCh--HHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC------CeEEEEehHHhh
Confidence 3678998 556666666552 12357899999999999999999998751 123444443221
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc-------------ccccccCCC----CCC
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF-------------RLEEVGIPE----PSE 263 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~~----~~~ 263 (932)
.. . ..........++......++.+|+||+++... ....+...+ ...
T Consensus 155 ~~--------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 155 SK--------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp CS--------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred cc--------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 10 0 00111122233333334567899999995320 011111111 111
Q ss_pred CCCcEEEEEeCCcc-ccccc--ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCC-CcHHHHHHH
Q 036714 264 ENGCKLVVTTRSVG-ICRSM--GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAG-LPLAIVTVA 338 (932)
Q Consensus 264 ~~gs~iivTTR~~~-v~~~~--~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~ 338 (932)
..+..||.||.... +.... .... +.+...+.++..+++...+....... ..+....|++.+.| .+-.|..+.
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23445665665432 21111 1122 78888888998888887664332211 23567888999998 444555543
No 182
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.03 E-value=1.9e-05 Score=86.92 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=36.5
Q ss_pred ccccccchH-HHHHHHHHHhcCCCe--eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTK-KVVEEIWEDLMGDKV--TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~-~~~~~l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|++.. +.+..+...+..+.. +.+.|+|++|+|||++|+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 679998431 234445666665543 589999999999999999999987
No 183
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.02 E-value=0.0001 Score=79.05 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=100.7
Q ss_pred cccccccchHHHHHHHHHHhc----------C--CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 133 MATLAGEKTKKVVEEIWEDLM----------G--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
...++|. +..++.|.+.+. . ...+-|.++|++|+|||+||+++++... .. .+.++.+
T Consensus 17 ~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~~---~~~v~~~--- 85 (322)
T 3eie_A 17 WEDVAGL--EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---ST---FFSVSSS--- 85 (322)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT---CE---EEEEEHH---
T ss_pred HHHhcCh--HHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC---CC---EEEEchH---
Confidence 3678998 666777766651 1 1246799999999999999999998752 11 2333221
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc-------------ccccc---CCCCCCC
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR-------------LEEVG---IPEPSEE 264 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~---~~~~~~~ 264 (932)
++ . ... ..........++......++.+|+||+++.... ...+. ..+....
T Consensus 86 ---~l----~----~~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 86 ---DL----V----SKW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ---HH----H----TTT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ---HH----h----hcc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 11 1 110 011222333444444456778999999974211 11111 1111123
Q ss_pred CCcEEEEEeCCccccc-cc--ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCC-cHHHHHH
Q 036714 265 NGCKLVVTTRSVGICR-SM--GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGL-PLAIVTV 337 (932)
Q Consensus 265 ~gs~iivTTR~~~v~~-~~--~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~ 337 (932)
.+..||.||....... .. .... +.+...+.++-.+++...+....... .......|++.+.|. +-.|..+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 4556666776532221 11 1112 78888899999999998876543211 234567888898884 4344443
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.01 E-value=1.2e-05 Score=86.11 Aligned_cols=132 Identities=15% Similarity=0.161 Sum_probs=71.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
....+.|+|++|+|||++|+.+++..... ......-++.++... +..... ..........+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~------------l~~~~~--g~~~~~~~~~~~~~- 129 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRL-GYVRKGHLVSVTRDD------------LVGQYI--GHTAPKTKEVLKRA- 129 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHT-TSSSSCCEEEECGGG------------TCCSST--TCHHHHHHHHHHHH-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhc-CCcCCCcEEEEcHHH------------hhhhcc--cccHHHHHHHHHhc-
Confidence 35579999999999999999999887332 221111223332110 000000 01111122223222
Q ss_pred cCCeEEEEEeccccc-----------cccccccCCCCCCCCCcEEEEEeCCc----------cccccccceeEeccCCCH
Q 036714 236 AKEKFVLILDDMWEA-----------FRLEEVGIPEPSEENGCKLVVTTRSV----------GICRSMGCKEVRVQPLSN 294 (932)
Q Consensus 236 ~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTTR~~----------~v~~~~~~~~~~l~~L~~ 294 (932)
+.-+|++|+++.. .....+...+.....+..||+||... .+...+. ..+.+++++.
T Consensus 130 --~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~ 206 (309)
T 3syl_A 130 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYSD 206 (309)
T ss_dssp --TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCCH
T ss_pred --CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCH
Confidence 2359999999732 11222222222223456788887542 2222221 2289999999
Q ss_pred HHHHHHHHHhhC
Q 036714 295 EEALNLFLDKVG 306 (932)
Q Consensus 295 ~~~~~lf~~~~~ 306 (932)
++...++...+.
T Consensus 207 ~~~~~il~~~l~ 218 (309)
T 3syl_A 207 EELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.01 E-value=3.2e-05 Score=83.34 Aligned_cols=175 Identities=13% Similarity=0.119 Sum_probs=98.2
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
..++|. +..++.+..++..+. ..++.+.|++|+|||++|+.+++... ..++.++.+.. ....+ ..++..
T Consensus 26 ~~ivg~--~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~~~~i-~~~~~~ 95 (324)
T 3u61_B 26 DECILP--AFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-KIDFV-RGPLTN 95 (324)
T ss_dssp TTSCCC--HHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-CHHHH-HTHHHH
T ss_pred HHHhCc--HHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-CHHHH-HHHHHH
Confidence 679998 667888888887665 46777788899999999999998751 22444554332 22222 211111
Q ss_pred HhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc---ccccccCCCCCCCCCcEEEEEeCCcc-ccccc--ccee
Q 036714 213 LKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF---RLEEVGIPEPSEENGCKLVVTTRSVG-ICRSM--GCKE 286 (932)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~--~~~~ 286 (932)
...... ..+++-++++||++... ..+.+...+.....+.++|+||.... +.... ....
T Consensus 96 ~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 96 FASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 110000 02368899999998643 22222221111123567888887643 21111 1123
Q ss_pred EeccCCCHHHHHHHH-------HHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 287 VRVQPLSNEEALNLF-------LDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 287 ~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
+++.+++.++-.+++ .+.+.......++ .+....|++.++|.+..+..
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 899999988743332 2222221111111 26677888889887765443
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.00 E-value=0.00015 Score=77.62 Aligned_cols=180 Identities=12% Similarity=0.190 Sum_probs=98.6
Q ss_pred cccccccchHHHHHHHHHHhc----------C--CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 133 MATLAGEKTKKVVEEIWEDLM----------G--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
...++|. +..++.|.+.+. + ...+.|.++|++|+|||+||+++++... . ...+.++.+.-.
T Consensus 11 ~~di~G~--~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~-~~~~~i~~~~l~ 83 (322)
T 1xwi_A 11 WSDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----N-STFFSISSSDLV 83 (322)
T ss_dssp GGGSCSC--HHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT----S-CEEEEEECCSSC
T ss_pred HHHhcCH--HHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC----C-CcEEEEEhHHHH
Confidence 3678887 445555554431 1 1247899999999999999999998751 1 123334433221
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc-------------cccccC---CCCCCC
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR-------------LEEVGI---PEPSEE 264 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~---~~~~~~ 264 (932)
. .... ........++......++.+|++|+++.... ...+.. .+....
T Consensus 84 ~--------------~~~g--~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 84 S--------------KWLG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp C--------------SSCC--SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred h--------------hhhh--HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 1 0000 1112233333333345788999999975310 011111 111113
Q ss_pred CCcEEEEEeCCccccc-cc--ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc-HHHHHHH
Q 036714 265 NGCKLVVTTRSVGICR-SM--GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP-LAIVTVA 338 (932)
Q Consensus 265 ~gs~iivTTR~~~v~~-~~--~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~ 338 (932)
.+..||.||....... .. .... +.++..+.++-.+++...+....... .......|++.+.|.. -.|..+.
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3455665665432211 10 1222 78888889999999988775432211 2356778999999874 3354443
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=3.5e-06 Score=80.30 Aligned_cols=86 Identities=15% Similarity=0.265 Sum_probs=60.5
Q ss_pred ccceeeEeccC----CccccccccCCccEEEEecCCCCcccccccccccC----CCccEEEEeeccccccccccccchhh
Q 036714 732 DVQFLQMFEVS----DVASLNDFSHDLKVLRFDSCKNLKNLFSLRLLPAL----QNLEVLEVEDCYSIEEIVAVEDEETE 803 (932)
Q Consensus 732 ~L~~L~l~~~~----~~~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L----~~L~~L~l~~c~~l~~~~~~~~~~~~ 803 (932)
.|+.|++++|. ++..+. .+++|++|+|++|..+++- .+..+..+ ++|++|+|++|..+++-....
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~----- 134 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIA----- 134 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence 46677777665 222332 2389999999999988873 23333332 479999999998887653321
Q ss_pred hhhhccccccccccCccceeeccCCcccccc
Q 036714 804 KELATNTIINIVTLPRLKKFYLWGLREFKSF 834 (932)
Q Consensus 804 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i 834 (932)
+..+|+|++|+|++|+.+++.
T Consensus 135 ----------L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 135 ----------LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ----------GGGCTTCCEEEEESCTTCCCH
T ss_pred ----------HhcCCCCCEEECCCCCCCCch
Confidence 557899999999999988874
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.98 E-value=5e-05 Score=81.97 Aligned_cols=169 Identities=11% Similarity=0.136 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEEeCCCChHHHHHHHHHHHHhhccC-------------------CCcEEEEEEEC---C
Q 036714 142 KKVVEEIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-------------------KFNVVIWVTVS---Q 198 (932)
Q Consensus 142 ~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~s---~ 198 (932)
++..+.+...+..++ .+.+.++|+.|+|||++|+.+++....... +++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 455677777777666 467999999999999999999988632111 122 2233221 1
Q ss_pred ccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCc
Q 036714 199 PLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSV 276 (932)
Q Consensus 199 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~ 276 (932)
...+..+ +++.+.+.... ..+++-++|+|+++.. .....+...+.....++.+|++|...
T Consensus 87 ~~~i~~i-r~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1222211 12222221100 0246788999999863 22233322232223466777777654
Q ss_pred c-ccccc--cceeEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 277 G-ICRSM--GCKEVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 277 ~-v~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
+ +.... .+..+++.+++.++..+.+.+... . ..+.+..+++.++|.|..+..+
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 32211 122389999999999999887751 1 1345678999999999766544
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.96 E-value=2.1e-05 Score=76.84 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=41.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..++|| +.+++.+.+.+.....+.+.|+|++|+|||++|+.+++...
T Consensus 22 ~~~~g~--~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 22 DPVIGR--DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred chhhcc--hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 578999 77889999998877677789999999999999999999863
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.95 E-value=0.00026 Score=75.05 Aligned_cols=178 Identities=11% Similarity=0.136 Sum_probs=96.7
Q ss_pred cccccccchHHHHHHHHHHhcC------------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 133 MATLAGEKTKKVVEEIWEDLMG------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
-..++|. +..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++... ...+.++.+.-.
T Consensus 20 ~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~------~~~~~i~~~~l~ 91 (297)
T 3b9p_A 20 WTDIAGQ--DVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS------ATFLNISAASLT 91 (297)
T ss_dssp GGGSCCC--HHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT------CEEEEEESTTTS
T ss_pred HHHhCCh--HHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEeeHHHHh
Confidence 3678998 5566666665521 2357889999999999999999998751 123344433321
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc-------------ccccc---CCCCC--
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR-------------LEEVG---IPEPS-- 262 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~---~~~~~-- 262 (932)
. .. ..........++......++.+|++|++..... ...+. ...+.
T Consensus 92 ~--------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 92 S--------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp S--------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred h--------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 1 00 001112222233333345678999999965311 00010 01111
Q ss_pred CCCCcEEEEEeCCcc-ccccc--ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH-HHHHH
Q 036714 263 EENGCKLVVTTRSVG-ICRSM--GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL-AIVTV 337 (932)
Q Consensus 263 ~~~gs~iivTTR~~~-v~~~~--~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 337 (932)
.+.+..||.||.... +.... .... +.+...+.++...++...+..... ....+....+++.+.|.+- ++..+
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 123455666776543 21111 1112 677777788888888776543221 1123567788899999875 44443
No 191
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.92 E-value=0.00019 Score=79.36 Aligned_cols=179 Identities=12% Similarity=0.143 Sum_probs=97.3
Q ss_pred CcccccccchHHHHHHHHHHhc------------CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 132 TMATLAGEKTKKVVEEIWEDLM------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 132 ~~~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
....++|. +..++.+..++. ....+-|.|+|++|+|||++|+.+++... ..++.++.+.-
T Consensus 113 ~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~------~~~~~v~~~~l 184 (389)
T 3vfd_A 113 KFDDIAGQ--DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN------ATFFNISAASL 184 (389)
T ss_dssp CGGGSCSC--HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEECSCCC
T ss_pred ChHHhCCH--HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc------CcEEEeeHHHh
Confidence 34789998 667777776662 12246899999999999999999988741 12333433322
Q ss_pred cCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--------c-----cccccCCC---C-C
Q 036714 200 LYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--------R-----LEEVGIPE---P-S 262 (932)
Q Consensus 200 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~-----~~~l~~~~---~-~ 262 (932)
.. .. .+ .. ......++......++.+|+||+++... . ...+...+ . .
T Consensus 185 ~~--~~-------~g-----~~--~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 185 TS--KY-------VG-----EG--EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp ---------------------C--HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred hc--cc-------cc-----hH--HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 11 00 00 00 1112223333334456899999996430 0 01111000 1 0
Q ss_pred CCCCcEEEEEeCCcccc-ccc--ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH-HHHHH
Q 036714 263 EENGCKLVVTTRSVGIC-RSM--GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL-AIVTV 337 (932)
Q Consensus 263 ~~~gs~iivTTR~~~v~-~~~--~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 337 (932)
......||.||....-. ... .... +.+...+.++...++...+....... ..+....|++.+.|..- ++..+
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 12234556566543221 111 1222 78888899999999988775532212 23467789999988655 45444
No 192
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.91 E-value=0.00012 Score=81.20 Aligned_cols=305 Identities=10% Similarity=0.134 Sum_probs=153.1
Q ss_pred ccccCCCcCCCCC-CceEEEeecCCCccCCChhhhccCCceeEEEccCCC---CcccCc-cccccccccccccccccccC
Q 036714 504 IEEIPSYMSPHCD-ILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTN---IKVLPS-SVSDLMNLRSLLLRWCENLE 578 (932)
Q Consensus 504 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~---~~~lp~-~i~~l~~L~~L~L~~~~~l~ 578 (932)
++.+....|.+|+ .|+++.+.. .+..++...|.++.+|+.+.++.+. ++.++. .+..+.+|+.+.+.. .++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCS
T ss_pred eeEcCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccc
Confidence 4556667777774 488888865 3677777778888888888887653 455543 355677777777654 355
Q ss_pred CCC--ChhccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHH
Q 036714 579 RVP--SLAKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEA 655 (932)
Q Consensus 579 ~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 655 (932)
.++ .|..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..+....+.. .+|+.+.+.. .........+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~--~~~~i~~~af 201 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPA--KVTRIGTNAF 201 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECT--TCCEECTTTT
T ss_pred eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECC--cccccccchh
Confidence 555 4777788888887543 344432 3456777887777644 55555554443 4577766651 1111111122
Q ss_pred HHHHhccceeEEEecChhhhhhhhcccCCCCcceEEEEecccccCCceeecccceeEEEEeecccccc-cCcccCCcccc
Q 036714 656 ARLSDRLDTFEGIFSTLNDFNLYVKSTDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICER-EETIVLPEDVQ 734 (932)
Q Consensus 656 ~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~ 734 (932)
... .++................+.... ........... .......+.+-+ .+... ...+..+..|+
T Consensus 202 ~~c-~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~ 268 (394)
T 4gt6_A 202 SEC-FALSTITSDSESYPAIDNVLYEKS--ANGDYALIRYP---------SQREDPAFKIPN-GVARIETHAFDSCAYLA 268 (394)
T ss_dssp TTC-TTCCEEEECCSSSCBSSSCEEEEC--TTSCEEEEECC---------TTCCCSEEECCT-TEEEECTTTTTTCSSCC
T ss_pred hhc-cccceecccccccccccceeeccc--ccccccccccc---------cccccceEEcCC-cceEcccceeeeccccc
Confidence 222 444443332211111000000000 00000000000 000000111000 00000 01223344555
Q ss_pred eeeEeccCC-cc-ccccccCCccEEEEecCCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccc
Q 036714 735 FLQMFEVSD-VA-SLNDFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTII 812 (932)
Q Consensus 735 ~L~l~~~~~-~~-~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 812 (932)
.+.+..... +. .....+++|+.+.+.. .++.++. ..+..+.+|+.+.|.+ .++.+....
T Consensus 269 ~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~a-------------- 329 (394)
T 4gt6_A 269 SVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPE-SVFAGCISLKSIDIPE--GITQILDDA-------------- 329 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEECCT--TCCEECTTT--------------
T ss_pred EEecccccceecCcccccccccccccCCC--cccccCc-eeecCCCCcCEEEeCC--cccEehHhH--------------
Confidence 554432210 00 0011236788888753 4555543 4567788888888863 455554332
Q ss_pred cccccCccceeeccCCcccccccCCCCcccCCCccEEEecc
Q 036714 813 NIVTLPRLKKFYLWGLREFKSFCSNNGVLVCNSLQEIEVHR 853 (932)
Q Consensus 813 ~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~p~L~~L~i~~ 853 (932)
+.++.+|+++.|.+ +++.+.. .....|++|+.+.+.+
T Consensus 330 -F~~C~~L~~i~ip~--sv~~I~~-~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 330 -FAGCEQLERIAIPS--SVTKIPE-SAFSNCTALNNIEYSG 366 (394)
T ss_dssp -TTTCTTCCEEEECT--TCCBCCG-GGGTTCTTCCEEEESS
T ss_pred -hhCCCCCCEEEECc--ccCEEhH-hHhhCCCCCCEEEECC
Confidence 55788888888854 3555543 1223467788877764
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.89 E-value=4.8e-05 Score=82.51 Aligned_cols=180 Identities=13% Similarity=0.193 Sum_probs=101.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCc-EEEEEEECCccCHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
..++|. +..++.+...+..++.+.+.++|++|+||||+|+.+++.... ..+. .+..++.+.......+. +++..
T Consensus 25 ~~~~g~--~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~~~~~~~~~~ir-~~i~~ 99 (340)
T 1sxj_C 25 DEVYGQ--NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG--KNYSNMVLELNASDDRGIDVVR-NQIKD 99 (340)
T ss_dssp GGCCSC--HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT--TSHHHHEEEECTTSCCSHHHHH-THHHH
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC--CCccceEEEEcCcccccHHHHH-HHHHH
Confidence 567887 667788888888777655999999999999999999998631 1111 12222222222222221 11111
Q ss_pred HhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCcc-ccccc--cceeE
Q 036714 213 LKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVG-ICRSM--GCKEV 287 (932)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~--~~~~~ 287 (932)
+.... ....+.+-++|+|+++.. ...+.+...+......+++|++|.... +.... .+..+
T Consensus 100 ~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 100 FASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 11000 001234678999998652 122222211111123556777765432 21111 12238
Q ss_pred eccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHH
Q 036714 288 RVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVT 336 (932)
Q Consensus 288 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 336 (932)
++.+++.++..+.+.+.+....... ..+..+.|++.++|.+.-+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 8999999999888887663322111 245677889999998875433
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.86 E-value=7.9e-05 Score=80.15 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=97.5
Q ss_pred cccc-ccchHHHHHHHHHHhcCC--CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHH
Q 036714 134 ATLA-GEKTKKVVEEIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 134 ~~~v-Gr~~~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 210 (932)
..|+ |.........+...+..+ ....+.|+|++|+||||||+.+++..... . ..+++++. .++...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~------~~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSA------DDFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEH------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEH------HHHHHHHH
Confidence 4454 654444455555555543 35678999999999999999999987322 2 23445543 23333333
Q ss_pred HHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----ccccccCCCCC-CCCCcEEEEEeCCcc-----c--
Q 036714 211 TALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----RLEEVGIPEPS-EENGCKLVVTTRSVG-----I-- 278 (932)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~iivTTR~~~-----v-- 278 (932)
..+... ........+ . +.-+|++||+.... ..+.+...+.. ...+..||+||.... +
T Consensus 82 ~~~~~~---------~~~~~~~~~-~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 82 EHLKKG---------TINEFRNMY-K-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHHT---------CHHHHHHHH-H-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHHcC---------cHHHHHHHh-c-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 333211 011112222 2 36799999997532 11222211110 123557888886431 1
Q ss_pred --ccccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHH
Q 036714 279 --CRSMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAI 334 (932)
Q Consensus 279 --~~~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 334 (932)
...+.... +++++ +.++...++...+.......+ .++...|++.+ |..-.+
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHH
Confidence 11222223 89999 999999999887643222122 45677788888 776543
No 195
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=1e-05 Score=88.04 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=6.8
Q ss_pred hccceeEEEecCh
Q 036714 660 DRLDTFEGIFSTL 672 (932)
Q Consensus 660 ~~L~~L~l~~~~~ 672 (932)
++|+.|+++.|.+
T Consensus 307 ~~L~~L~L~~n~i 319 (362)
T 2ra8_A 307 KHLKFINMKYNYL 319 (362)
T ss_dssp TTCSEEECCSBBC
T ss_pred CcceEEECCCCcC
Confidence 5555555554443
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.84 E-value=0.00014 Score=82.15 Aligned_cols=148 Identities=12% Similarity=0.151 Sum_probs=82.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccC----CCcEEEEEEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN----KFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
..++|| +.++..+...+......-+.|+|++|+|||++|+.+++....... .-..++.++.+.
T Consensus 180 d~iiGr--~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 180 DPVIGR--SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CCCCCC--HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCc--HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 569999 778899999987665666789999999999999999998632110 011122233220
Q ss_pred HHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCccc------cccc-
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGI------CRSM- 282 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v------~~~~- 282 (932)
..... .......++......++.+|++| ...+....+...+. ....++|.+|..... ....
T Consensus 247 --~~~g~------~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 247 --KYRGE------FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --cccch------HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00000 00122333444444567899999 22222222332332 223466666655431 1111
Q ss_pred c-ceeEeccCCCHHHHHHHHHHhhC
Q 036714 283 G-CKEVRVQPLSNEEALNLFLDKVG 306 (932)
Q Consensus 283 ~-~~~~~l~~L~~~~~~~lf~~~~~ 306 (932)
. ...+.+.+.+.++...++...+.
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHH
Confidence 1 11289999999999999997654
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.82 E-value=0.00026 Score=76.91 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=96.5
Q ss_pred cccccccchHHHHHHHHHHhc----------C--CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 133 MATLAGEKTKKVVEEIWEDLM----------G--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
...++|. +..++.|.+.+. . ...+-|.|+|++|+|||+||+.+++... . ..+.+..+
T Consensus 50 ~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---~---~~~~v~~~--- 118 (355)
T 2qp9_X 50 WEDVAGL--EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---S---TFFSVSSS--- 118 (355)
T ss_dssp GGGSCCG--GGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT---C---EEEEEEHH---
T ss_pred HHHhCCH--HHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC---C---CEEEeeHH---
Confidence 3678998 445566655541 1 1235688999999999999999999862 1 12333222
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc-------------cccccCC---CCCCC
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR-------------LEEVGIP---EPSEE 264 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~---~~~~~ 264 (932)
++.. ..... .......++......++.+|+||+++.... ...+... +....
T Consensus 119 ---~l~~--------~~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 ---DLVS--------KWMGE--SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---HHHS--------CC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ---HHhh--------hhcch--HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 1111 00000 111223333333345789999999975310 1111111 11112
Q ss_pred CCcEEEEEeCCccccc-cc--ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCC-cHHHHHH
Q 036714 265 NGCKLVVTTRSVGICR-SM--GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGL-PLAIVTV 337 (932)
Q Consensus 265 ~gs~iivTTR~~~v~~-~~--~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~ 337 (932)
.+..||.||....... .. .... +.+...+.++-.+++...+....... .......|++.+.|. +-.|..+
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 3455666666542211 11 1222 78888899999999988776442211 234567888999884 4345444
No 198
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.77 E-value=1.1e-05 Score=87.56 Aligned_cols=140 Identities=18% Similarity=0.248 Sum_probs=93.6
Q ss_pred CCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcc-cCcccc--ccccccccccccccc-------cCCCC
Q 036714 512 SPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKV-LPSSVS--DLMNLRSLLLRWCEN-------LERVP 581 (932)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~i~--~l~~L~~L~L~~~~~-------l~~lp 581 (932)
...+|+|+.|.+++|..+ .++. + .+++|+.|+|..+.+.. ....++ .+++|++|+|+.+.. +..+.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 356789999999987333 3443 2 37899999999887652 222333 689999999863211 22222
Q ss_pred -C--hhccccCcEeecccCCCcc-ccccc---ccCCCCCEEeCCCCCCcc-----cCCCccCCCCCcceEEeecCCchhh
Q 036714 582 -S--LAKLLALQYLDLEETGIEE-VPEGM---EMLENLSHLYLSSPRLKK-----FPTGILPRLRNLYKLKLSFGNEALR 649 (932)
Q Consensus 582 -~--~~~l~~L~~L~l~~~~i~~-lp~~~---~~l~~L~~L~l~~~~l~~-----~p~~~l~~l~~L~~L~l~~~~~~~~ 649 (932)
. ...+++|++|++++|.+.. .+..+ ..+++|++|+++.|.+.. ++.+ +..+++|+.|+++.+ .+..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT-HHHHTTCSEEECCSB-BCCH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh-cccCCcceEEECCCC-cCCH
Confidence 1 2357899999999998763 22222 357899999999998765 3444 367899999999843 4555
Q ss_pred hcHHHHHH
Q 036714 650 ETVEEAAR 657 (932)
Q Consensus 650 ~~~~~l~~ 657 (932)
.....+..
T Consensus 322 ~~~~~l~~ 329 (362)
T 2ra8_A 322 EMKKELQK 329 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.76 E-value=0.00027 Score=79.28 Aligned_cols=179 Identities=14% Similarity=0.200 Sum_probs=97.0
Q ss_pred cccccccchHHHHHHHHHHhc------------CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 133 MATLAGEKTKKVVEEIWEDLM------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 133 ~~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
...++|. +..++.|.+.+. ....+.|.|+|++|+|||+||+.+++... . .. ++.++...
T Consensus 133 ~~di~G~--~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~-~~--~~~v~~~~ 203 (444)
T 2zan_A 133 WSDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----N-ST--FFSISSSD 203 (444)
T ss_dssp GGGSCSC--HHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----S-SE--EEEECCC-
T ss_pred HHHhcCH--HHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----C-CC--EEEEeHHH
Confidence 3678998 556666665542 12347899999999999999999998751 1 12 23333221
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc-------------ccccccCCCCC---CC
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF-------------RLEEVGIPEPS---EE 264 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~---~~ 264 (932)
+.... .+.. .. ....++......++.+|+||+++... ....+...+.. ..
T Consensus 204 ----l~~~~---~g~~---~~----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 ----LVSKW---LGES---EK----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ---------------C---CC----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ----HHhhh---cchH---HH----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 11110 1110 01 12223333334568899999997530 01112222221 23
Q ss_pred CCcEEEEEeCCcccccc---cccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc-HHHHHH
Q 036714 265 NGCKLVVTTRSVGICRS---MGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP-LAIVTV 337 (932)
Q Consensus 265 ~gs~iivTTR~~~v~~~---~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~ 337 (932)
.+..||.||........ -.... +.+...+.++...+|...+....... .......|++.+.|.. -.|..+
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 45567767765422110 01222 77888888888889988775432211 2355678899999854 344443
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.72 E-value=0.00048 Score=72.99 Aligned_cols=171 Identities=16% Similarity=0.192 Sum_probs=92.7
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDLM-------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
..++|. +..++.+.+++. -...+.|.|+|++|+|||+||+.+++... . ..+.+ +
T Consensus 15 ~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~---~~i~v--~--- 81 (301)
T 3cf0_A 15 EDIGGL--EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---A---NFISI--K--- 81 (301)
T ss_dssp GGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---C---EEEEE--C---
T ss_pred HHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---C---CEEEE--E---
Confidence 678887 445555554432 12356799999999999999999998752 1 12222 2
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccc----------------cccccC---CCC
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFR----------------LEEVGI---PEP 261 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~---~~~ 261 (932)
..++.... .+.. . .....++.......+.+|++|++..... ...+.. .+.
T Consensus 82 -~~~l~~~~---~g~~----~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 -GPELLTMW---FGES----E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp -HHHHHHHH---HTTC----T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred -hHHHHhhh---cCch----H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 12222211 1111 1 1122333333345689999999974100 111111 111
Q ss_pred CCCCCcEEEEEeCCcccc-cc-c---ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHH
Q 036714 262 SEENGCKLVVTTRSVGIC-RS-M---GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLA 333 (932)
Q Consensus 262 ~~~~gs~iivTTR~~~v~-~~-~---~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 333 (932)
...+..||.||...+.. .. . .-.. +.+...+.++-.+++...+.......... ...+++.+.|.|-+
T Consensus 151 -~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 -TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp -TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred -CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 12345677777654322 11 1 1223 88889999998888887765432211111 24566677777754
No 201
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.52 E-value=0.00062 Score=82.21 Aligned_cols=148 Identities=12% Similarity=0.148 Sum_probs=83.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCC---Cc-EEEEEEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FN-VVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~-~~~wv~~s~~~~~~~~~~~i 209 (932)
..++|| +++++++...+......-+.++|++|+|||++|+.+++........ .+ .++.++.
T Consensus 180 d~iiG~--~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGR--SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCC--HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCc--hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 569999 7789999999877666668899999999999999999986221100 11 1222222
Q ss_pred HHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccccccccccCCCCCCCCCcEEEEEeCCccc------cccc-
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAFRLEEVGIPEPSEENGCKLVVTTRSVGI------CRSM- 282 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTTR~~~v------~~~~- 282 (932)
+... ..........++......++.+|++| ...+....+...+. ....++|.||..... ....
T Consensus 245 ----g~~~--~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 ----GTKY--RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ----cccc--cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 0000 00011122334444445678899999 22222222332332 234566766665441 1111
Q ss_pred -cceeEeccCCCHHHHHHHHHHhhC
Q 036714 283 -GCKEVRVQPLSNEEALNLFLDKVG 306 (932)
Q Consensus 283 -~~~~~~l~~L~~~~~~~lf~~~~~ 306 (932)
....+.++..+.++..+++.....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 112289999999999999987653
No 202
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.52 E-value=0.002 Score=70.87 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=31.5
Q ss_pred cccceeecccccccccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEcc
Q 036714 492 ANLERVSLMMNDIEEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLS 549 (932)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 549 (932)
.+++.+.+. ..++.++...|.+|.+|+.+.+.. .+..++...|.++ .|..+.+.
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~ 99 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGM 99 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEEC
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECC
Confidence 455566654 336666666677777777777654 3556666666655 34444443
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.51 E-value=0.00027 Score=86.39 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=83.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccC----CCcEEEEEEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN----KFNVVIWVTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i 209 (932)
..++|| ++++.++++.+......-+.++|++|+||||+|+.+++....... .-..+++++.+.-..
T Consensus 170 d~viGr--~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 170 DPVIGR--DEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CCCCSC--HHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred cccCCc--HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 568999 778999999887766667889999999999999999998632110 112344443322110
Q ss_pred HHHHhccccccchHHHHHHHHHHHHhc-CCeEEEEEecccccc---------ccc-cccCCCCCCCCCcEEEEEeCCcc-
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLKA-KEKFVLILDDMWEAF---------RLE-EVGIPEPSEENGCKLVVTTRSVG- 277 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~---------~~~-~l~~~~~~~~~gs~iivTTR~~~- 277 (932)
+.. ...........++..... +++.+|++|++.... +.. .+...+. ..+..+|.+|....
T Consensus 240 ----g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 ----GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHH
T ss_pred ----cCc--cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHH
Confidence 000 001122233344444433 368999999997532 111 1111111 12334555554321
Q ss_pred --------ccccccceeEeccCCCHHHHHHHHHHh
Q 036714 278 --------ICRSMGCKEVRVQPLSNEEALNLFLDK 304 (932)
Q Consensus 278 --------v~~~~~~~~~~l~~L~~~~~~~lf~~~ 304 (932)
+.+.+. .+.+++.+.++..+++...
T Consensus 312 ~~~~~d~aL~rRf~--~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 312 REIEKDPALERRFQ--PVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHTTCTTTCSCCC--CEEECCCCHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCc--eEEeCCCCHHHHHHHHHhh
Confidence 222221 2889999999999988754
No 204
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.0014 Score=72.47 Aligned_cols=309 Identities=11% Similarity=0.112 Sum_probs=163.5
Q ss_pred ccCCChhhhccCC-ceeEEEccCCCCcccCc-cccccccccccccccc--cccCCCC--ChhccccCcEeecccCCCccc
Q 036714 529 LWTIPECFFVYMH-GLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRWC--ENLERVP--SLAKLLALQYLDLEETGIEEV 602 (932)
Q Consensus 529 ~~~~~~~~~~~l~-~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~--~~l~~lp--~~~~l~~L~~L~l~~~~i~~l 602 (932)
+..++...|.+++ .|+.+.+..+ ++.+.. .+.++.+|+.+.+..+ ..++.++ .|.++.+|+.+.+.. .++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-cccee
Confidence 4567777788875 5999999764 666644 5678999999998764 3466666 588889999887754 35555
Q ss_pred cc-ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeecCCchhhhcHHHHHHHHhccceeEEEecChhhhhhhhcc
Q 036714 603 PE-GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDRLDTFEGIFSTLNDFNLYVKS 681 (932)
Q Consensus 603 p~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~ 681 (932)
+. .+..+.+|+.+.+..+ +..++...+..+.+|+.+.+. ..........+. - .+|+.+.+..+. ........
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~--~~~~~I~~~aF~-~-~~l~~i~ip~~~-~~i~~~af- 201 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP--DSVTAIEERAFT-G-TALTQIHIPAKV-TRIGTNAF- 201 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC--TTCCEECTTTTT-T-CCCSEEEECTTC-CEECTTTT-
T ss_pred hhhhhhhhcccccccccce-eeeecccceeccccccccccc--ceeeEecccccc-c-cceeEEEECCcc-cccccchh-
Confidence 43 4577889999999643 567777778899999999886 222222222222 1 556666653211 00000000
Q ss_pred cCCCCcceEEEEecccccCCceeecccceeEEEEeecccccccCcccCCcccceeeEeccCCccccccccCCccEEEEec
Q 036714 682 TDGRGLKNYCLLLSAYWMGGFLITDLEVHKSIFLIDCKICEREETIVLPEDVQFLQMFEVSDVASLNDFSHDLKVLRFDS 761 (932)
Q Consensus 682 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~L~~ 761 (932)
..+..+.............+.............+....-......+..|..++... ......+.+|+.+.+.+
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~-------~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIE-------THAFDSCAYLASVKMPD 274 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEEC-------TTTTTTCSSCCEEECCT
T ss_pred hhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcc-------cceeeecccccEEeccc
Confidence 01112222211111100000000000000000000000000001112222222210 00011226778877754
Q ss_pred CCCCcccccccccccCCCccEEEEeeccccccccccccchhhhhhhccccccccccCccceeeccCCcccccccCCCCcc
Q 036714 762 CKNLKNLFSLRLLPALQNLEVLEVEDCYSIEEIVAVEDEETEKELATNTIINIVTLPRLKKFYLWGLREFKSFCSNNGVL 841 (932)
Q Consensus 762 c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~ 841 (932)
. +..+. ...+.++.+|+.+.+. ..++.+.... +.++++|+++.|.+ +++.+.. ....
T Consensus 275 ~--~~~I~-~~aF~~c~~L~~i~l~--~~i~~I~~~a---------------F~~c~~L~~i~lp~--~v~~I~~-~aF~ 331 (394)
T 4gt6_A 275 S--VVSIG-TGAFMNCPALQDIEFS--SRITELPESV---------------FAGCISLKSIDIPE--GITQILD-DAFA 331 (394)
T ss_dssp T--CCEEC-TTTTTTCTTCCEEECC--TTCCEECTTT---------------TTTCTTCCEEECCT--TCCEECT-TTTT
T ss_pred c--cceec-CcccccccccccccCC--CcccccCcee---------------ecCCCCcCEEEeCC--cccEehH-hHhh
Confidence 3 23332 2456678888888775 3555554432 56788999999864 4666654 1233
Q ss_pred cCCCccEEEecccCCCccccCCCcccCCCCCCCCCCcceEecch
Q 036714 842 VCNSLQEIEVHRCPKLKRLSLSLPLLDNGQPSPPPTLEVIKMEK 885 (932)
Q Consensus 842 ~~p~L~~L~i~~C~~L~~lp~~l~~l~~~~~~~~~~L~~l~~~~ 885 (932)
.|.+|+.+.|.+ +++.++.. . -..|.+|+.|....
T Consensus 332 ~C~~L~~i~ip~--sv~~I~~~--a-----F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 332 GCEQLERIAIPS--SVTKIPES--A-----FSNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEECT--TCCBCCGG--G-----GTTCTTCCEEEESS
T ss_pred CCCCCCEEEECc--ccCEEhHh--H-----hhCCCCCCEEEECC
Confidence 467788887743 45555431 1 13477888886553
No 205
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0026 Score=68.83 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=95.6
Q ss_pred ccccccchHHHHHHHHHHh----cC---------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDL----MG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L----~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
..+.|- ++.+++|.+.+ .. ...+-|.++|++|+|||.||+++++... .. .+.+..+.-.
T Consensus 148 ~dIgGl--~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~---~~---f~~v~~s~l~ 219 (405)
T 4b4t_J 148 DMVGGL--TKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD---CK---FIRVSGAELV 219 (405)
T ss_dssp GGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT---CE---EEEEEGGGGS
T ss_pred HHhCCH--HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC---CC---ceEEEhHHhh
Confidence 567776 44555444433 21 2357789999999999999999999862 12 3444443321
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------c------cccccCCCC--C
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------R------LEEVGIPEP--S 262 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~------~~~l~~~~~--~ 262 (932)
+ .. .......+..++.......+++|++|+++... + +..+...+. .
T Consensus 220 s--------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 220 Q--------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp C--------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred c--------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 1 00 11223334445555545679999999987420 0 111111111 1
Q ss_pred CCCCcEEEEEeCCcccccc-----cccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcH
Q 036714 263 EENGCKLVVTTRSVGICRS-----MGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPL 332 (932)
Q Consensus 263 ~~~gs~iivTTR~~~v~~~-----~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 332 (932)
...+..||.||...+.... ..-.. +.++.-+.++-.++|+.+.........-+ ...|++.+.|.-=
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SG 355 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSG 355 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCH
Confidence 2334456777766544321 12223 88888888888889887765432211112 4667788887653
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.00039 Score=73.43 Aligned_cols=145 Identities=14% Similarity=0.046 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhcc-CCCcEEEEEEECC-ccCHHHHHHHHHHHHhccccc
Q 036714 142 KKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQ-PLYLIKLQTEIATALKQSLLE 219 (932)
Q Consensus 142 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 219 (932)
++.++.+...+..++.+...++|++|+||||+|+.+++....-. .+.+ +.++..+. ...+..+ +++.+.+....
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p-- 78 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP-- 78 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC--
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc--
Confidence 34566777777776678999999999999999999998531111 2333 34454432 2333333 23333332111
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCc-cccccccceeEeccCCCHHH
Q 036714 220 NEDKVRRAGELLGMLKAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSV-GICRSMGCKEVRVQPLSNEE 296 (932)
Q Consensus 220 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~l~~L~~~~ 296 (932)
..+++-++|+|+++.. ...+.+...+....+.+.+|++|.+. .+........+++.++++++
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~ 143 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE 143 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHH
Confidence 0245678899999763 22333332232223566777776543 33221111158999999999
Q ss_pred HHHHHHHhh
Q 036714 297 ALNLFLDKV 305 (932)
Q Consensus 297 ~~~lf~~~~ 305 (932)
..+.+.+.+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998876
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0041 Score=68.38 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=83.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+-|.++|++|+|||+||+++++... - ..+.++.+.-.+ .. .......+..++.....
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~---~---~~~~v~~s~l~s--------------k~--~Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG---A---NFIFSPASGIVD--------------KY--IGESARIIREMFAYAKE 272 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT---C---EEEEEEGGGTCC--------------SS--SSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC---C---CEEEEehhhhcc--------------cc--chHHHHHHHHHHHHHHh
Confidence 57899999999999999999999862 1 234444433211 00 11122233444444445
Q ss_pred CCeEEEEEecccccc-------c---------cccccCCCC--CCCCCcEEEEEeCCccccc-----ccccee-EeccCC
Q 036714 237 KEKFVLILDDMWEAF-------R---------LEEVGIPEP--SEENGCKLVVTTRSVGICR-----SMGCKE-VRVQPL 292 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~-------~---------~~~l~~~~~--~~~~gs~iivTTR~~~v~~-----~~~~~~-~~l~~L 292 (932)
..+.+|++|+++... . +..+...+. ....+..||.||...+... ...-.. +.++.-
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lP 352 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP 352 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCC
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCc
Confidence 679999999996320 0 011111111 1234556777887644322 111223 788777
Q ss_pred CHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 293 SNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 293 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+.++-.++|+.++........-+ ...|++.+.|.-
T Consensus 353 d~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 353 NEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 88888888887664322211112 456777887765
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.44 E-value=5.1e-05 Score=70.78 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=30.3
Q ss_pred cccccchHHHHHHHHHHhc--CCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|+ ...+.++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~--s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGR--SEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCS--SHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeC--CHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46787 345555555442 1222446799999999999999999865
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.43 E-value=0.00011 Score=71.47 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcC---CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcccc
Q 036714 142 KKVVEEIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL 218 (932)
Q Consensus 142 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 218 (932)
++..+.+.+++.+ .....+.|+|++|+||||||+.+++..... ..+ .++++ +..++...+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~-~~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGI-RGYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCC-CCCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCC-eEEEE------EHHHHHHHHHHHhcCchH
Confidence 3445555555433 235789999999999999999999987322 222 12333 234444444433322111
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEEecccc--ccccc--cccCCCC-CCCCCcEEEEEeCCc
Q 036714 219 ENEDKVRRAGELLGMLKAKEKFVLILDDMWE--AFRLE--EVGIPEP-SEENGCKLVVTTRSV 276 (932)
Q Consensus 219 ~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~--~~~~~--~l~~~~~-~~~~gs~iivTTR~~ 276 (932)
. .....+. +.-+|||||++. .+.+. .+...+. ....|..||+||...
T Consensus 92 --~-------~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 --T-------KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --S-------HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred --H-------HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 1222222 456899999973 22221 1111111 012466788888753
No 210
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.43 E-value=0.0011 Score=80.25 Aligned_cols=152 Identities=17% Similarity=0.219 Sum_probs=89.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccC---CCcEEEE-EEECCccCHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN---KFNVVIW-VTVSQPLYLIKLQTEI 209 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~w-v~~s~~~~~~~~~~~i 209 (932)
..++|| +.++.++.+.+......-+.|+|++|+|||++|+.+++......- ..+..+| +..+.-
T Consensus 186 d~~iGr--~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGR--EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCC--HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 578999 778899999988766677889999999999999999987632110 1222222 221110
Q ss_pred HHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc----------cc-cccccCCCCCCCCCcEEEEEeCCcc-
Q 036714 210 ATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA----------FR-LEEVGIPEPSEENGCKLVVTTRSVG- 277 (932)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~----------~~-~~~l~~~~~~~~~gs~iivTTR~~~- 277 (932)
+... ............++..+...++.+|++|++... .+ ...+...+. ..+..+|.+|....
T Consensus 254 ---~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 ---LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_dssp ----CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHH
T ss_pred ---hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHH
Confidence 0000 011122333445555554556799999999743 11 112222232 23456666665432
Q ss_pred ---------ccccccceeEeccCCCHHHHHHHHHHhh
Q 036714 278 ---------ICRSMGCKEVRVQPLSNEEALNLFLDKV 305 (932)
Q Consensus 278 ---------v~~~~~~~~~~l~~L~~~~~~~lf~~~~ 305 (932)
+.+.+. .+.+...+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~--~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQ--KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEE--EEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCce--EEEcCCCCHHHHHHHHHHHH
Confidence 122211 28899999999888887643
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0061 Score=66.14 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=83.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
.+-|.++|++|+|||.||+++++... .. .+.++.++-.+ .. .......+..++.....
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~---~~---fi~v~~s~l~s--------------k~--vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS---AT---FLRIVGSELIQ--------------KY--LGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT---CE---EEEEESGGGCC--------------SS--SSHHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC---CC---EEEEEHHHhhh--------------cc--CchHHHHHHHHHHHHHh
Confidence 57899999999999999999999862 11 23343332111 10 11222334444444445
Q ss_pred CCeEEEEEeccccccc----------------cccccCCCC--CCCCCcEEEEEeCCcccccc-----cccee-EeccCC
Q 036714 237 KEKFVLILDDMWEAFR----------------LEEVGIPEP--SEENGCKLVVTTRSVGICRS-----MGCKE-VRVQPL 292 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iivTTR~~~v~~~-----~~~~~-~~l~~L 292 (932)
..+.+|++|+++.... +..+...+. ....+..||.||...+.... ..-.. +.++.-
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence 6789999999863200 001111010 12334466777766443221 12223 777777
Q ss_pred CHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 293 SNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 293 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+.++-.++|+.++........-+ ...|++.+.|.-
T Consensus 354 d~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 354 DLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 88888888887765432211112 456777777754
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0035 Score=68.85 Aligned_cols=170 Identities=13% Similarity=0.140 Sum_probs=92.2
Q ss_pred ccccccchHHHHHHHHHHh----cC---------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDL----MG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L----~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
..+.|- ++.+++|.+.+ .. ...+-|.++|++|+|||.||+++++... . ..+.++.+.-.
T Consensus 181 ~digGl--~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~---~---~f~~v~~s~l~ 252 (434)
T 4b4t_M 181 SDVGGL--DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN---A---TFLKLAAPQLV 252 (434)
T ss_dssp GGSCSC--HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---C---EEEEEEGGGGC
T ss_pred HhcCcH--HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC---C---CEEEEehhhhh
Confidence 567776 55555555443 22 2357899999999999999999999862 1 23444433211
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEeccccc-------cc---------cccccCCCC--C
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEA-------FR---------LEEVGIPEP--S 262 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-------~~---------~~~l~~~~~--~ 262 (932)
+ .. .......+..++.......+++|++|+++.. .. +..+...+. .
T Consensus 253 ~--------------~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 253 Q--------------MY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp S--------------SC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred h--------------cc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 1 10 1112223334444333456899999998631 00 011111111 1
Q ss_pred CCCCcEEEEEeCCccccc-----ccccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 263 EENGCKLVVTTRSVGICR-----SMGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 263 ~~~gs~iivTTR~~~v~~-----~~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
...+-.||.||...+... ...-.. +.++.-+.++-.++|+.++........-. ...|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 223445666776654322 112233 78888888888888876553221111111 456777887754
No 213
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=4.9e-05 Score=74.23 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=51.7
Q ss_pred ccCCceeEEEccCC-CCcc-----cCccccccccccccccccccccC----CCC-ChhccccCcEeecccCCCcc-----
Q 036714 538 VYMHGLKVLNLSRT-NIKV-----LPSSVSDLMNLRSLLLRWCENLE----RVP-SLAKLLALQYLDLEETGIEE----- 601 (932)
Q Consensus 538 ~~l~~L~~L~L~~~-~~~~-----lp~~i~~l~~L~~L~L~~~~~l~----~lp-~~~~l~~L~~L~l~~~~i~~----- 601 (932)
...+.|+.|+|++| .+.. +...+...++|++|+|++|..-. .+. .+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 44555666666665 5431 23334444555555555543211 111 23334556666666666553
Q ss_pred cccccccCCCCCEEeC--CCCCCcc-----cCCCccCCCCCcceEEee
Q 036714 602 VPEGMEMLENLSHLYL--SSPRLKK-----FPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 602 lp~~~~~l~~L~~L~l--~~~~l~~-----~p~~~l~~l~~L~~L~l~ 642 (932)
+...+...++|++|++ ++|.+.. +.. .+...++|++|+++
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECC
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEecc
Confidence 3445555566666666 5555442 111 13344555666655
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.34 E-value=0.0023 Score=72.25 Aligned_cols=169 Identities=13% Similarity=0.139 Sum_probs=91.9
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDLM-------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
..++|. +..++++.+.+. .....-|.|+|++|+|||++|+.+++.. .. ..+.++++.
T Consensus 204 ~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~~-- 273 (489)
T 3hu3_A 204 DDIGGC--RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPE-- 273 (489)
T ss_dssp GGCCSC--HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHHH--
T ss_pred HHcCCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEchH--
Confidence 467887 556666655543 2335678999999999999999998864 11 233343211
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc-------------ccccccCCCC--CCCC
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF-------------RLEEVGIPEP--SEEN 265 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~ 265 (932)
+ . .... ..........+.....+++.+|+||+++... ....+...+. ....
T Consensus 274 ----l----~----~~~~--g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 274 ----I----M----SKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp ----H----H----TSCT--THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred ----h----h----hhhc--chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 1 1 1110 1112223334444445678899999994210 0111111111 1123
Q ss_pred CcEEEEEeCCcc-ccccc----ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCC
Q 036714 266 GCKLVVTTRSVG-ICRSM----GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGL 330 (932)
Q Consensus 266 gs~iivTTR~~~-v~~~~----~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 330 (932)
+..||.||.... +.... .... +.+...+.++-.+++...+.......... ..++++.+.|.
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~ 406 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGH 406 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTC
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCC
Confidence 445666666542 22111 2222 88889999999999988765432211112 35566677775
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0044 Score=67.93 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=84.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
..+-|.++|++|+|||.||+++++... . ..+.++.+.-.+ .. .......+..++....
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~---~---~fi~vs~s~L~s--------------k~--vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD---A---TFIRVIGSELVQ--------------KY--VGEGARMVRELFEMAR 299 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT---C---EEEEEEGGGGCC--------------CS--SSHHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC---C---CeEEEEhHHhhc--------------cc--CCHHHHHHHHHHHHHH
Confidence 367899999999999999999999862 1 234444332111 10 1122233444444444
Q ss_pred cCCeEEEEEeccccccc----------------cccccCCCC--CCCCCcEEEEEeCCcccccc-----cccee-EeccC
Q 036714 236 AKEKFVLILDDMWEAFR----------------LEEVGIPEP--SEENGCKLVVTTRSVGICRS-----MGCKE-VRVQP 291 (932)
Q Consensus 236 ~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iivTTR~~~v~~~-----~~~~~-~~l~~ 291 (932)
...+++|++|+++.... ...+...+. ....+..||.||...+.... ..-.. +.++.
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 56799999999863210 000111111 12234456667765433221 12223 78888
Q ss_pred CCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 292 LSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 292 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
-+.++-.++|+.++........-. ...|++.+.|.-
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 888888889987765432211112 456778888764
No 216
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0052 Score=67.47 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=89.4
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
..+.|- ++.+++|.+.+. . ...+-|.++|++|+|||+||+++++... - ..+.++.++-.
T Consensus 172 ~digGl--~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~---~---~~~~v~~~~l~ 243 (428)
T 4b4t_K 172 ADVGGL--DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK---A---AFIRVNGSEFV 243 (428)
T ss_dssp GGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT---C---EEEEEEGGGTC
T ss_pred HHhccH--HHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---C---CeEEEecchhh
Confidence 567776 445555544332 1 2356799999999999999999999862 1 23444443321
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------c------cccccCCCC--C
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------R------LEEVGIPEP--S 262 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~------~~~l~~~~~--~ 262 (932)
+ .. .......+..++.......+.++++|+++... + +..+...+. .
T Consensus 244 ~--------------~~--~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 244 H--------------KY--LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp C--------------SS--CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred c--------------cc--cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 1 00 11222334444444445678999999986310 0 111111111 1
Q ss_pred CCCCcEEEEEeCCccccc-----ccccee-EeccCCCHHH-HHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 263 EENGCKLVVTTRSVGICR-----SMGCKE-VRVQPLSNEE-ALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 263 ~~~gs~iivTTR~~~v~~-----~~~~~~-~~l~~L~~~~-~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
...+..||.||...+... ...-.. +++..++..+ -..+|..++........-+ ...|++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 233456777776544322 112222 7777675544 4556655543322111111 456777787754
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=0.0029 Score=65.17 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=89.0
Q ss_pred cccccccch-HHHHHHHHHHhcCC---------CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCH
Q 036714 133 MATLAGEKT-KKVVEEIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYL 202 (932)
Q Consensus 133 ~~~~vGr~~-~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 202 (932)
-..++|.+. .+.+.+++.++... ..+-|.|+|++|+||||+|+.+++... .. .+.++.+.-...
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~---~~---~~~i~~~~~~~~ 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK---VP---FFTISGSDFVEM 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT---CC---EEEECSCSSTTS
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---CC---EEEEeHHHHHHH
Confidence 367889743 23334444444321 134588999999999999999998762 12 233332221110
Q ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------------ccccccCCCC--CCC
Q 036714 203 IKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------------RLEEVGIPEP--SEE 264 (932)
Q Consensus 203 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~ 264 (932)
.... .......+++......+.++++|+++... .+..+...+. ...
T Consensus 85 --------------~~~~--~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 85 --------------FVGV--GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------------CCCC--CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------------hhhh--hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0000 01122333444434567899999985311 0011110010 012
Q ss_pred CCcEEEEEeCCcc-ccccc----ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCC-CcHHHH
Q 036714 265 NGCKLVVTTRSVG-ICRSM----GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAG-LPLAIV 335 (932)
Q Consensus 265 ~gs~iivTTR~~~-v~~~~----~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~ 335 (932)
.+..||.||...+ +.... .-.. +.+...+.++-.+++...+..... .++ .....+++.+.| .+--+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l--~~~--~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL--APD--IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTT--CCHHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC--Ccc--ccHHHHHHHcCCCCHHHHH
Confidence 3456677776543 21111 1122 677777888877888776543221 111 113456677777 554444
No 218
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=8.3e-05 Score=72.57 Aligned_cols=110 Identities=14% Similarity=0.006 Sum_probs=77.4
Q ss_pred CCCCCCceEEEeecCCCccC-----CChhhhccCCceeEEEccCCCCcc-----cCccccccccccccccccccccCC--
Q 036714 512 SPHCDILSTLLLQANGNLWT-----IPECFFVYMHGLKVLNLSRTNIKV-----LPSSVSDLMNLRSLLLRWCENLER-- 579 (932)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~l~~-- 579 (932)
...+++|++|++++|..+.. +.. .+...+.|++|+|++|.+.. +...+...++|++|+|++|.. ..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i-~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI-SGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC-CHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC-CHHH
Confidence 34567888888887723322 112 23567889999999998763 445556667899999998753 32
Q ss_pred ---CC-ChhccccCcEeec--ccCCCcc-----cccccccCCCCCEEeCCCCCCc
Q 036714 580 ---VP-SLAKLLALQYLDL--EETGIEE-----VPEGMEMLENLSHLYLSSPRLK 623 (932)
Q Consensus 580 ---lp-~~~~l~~L~~L~l--~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~ 623 (932)
+. .+...++|++|++ ++|.|.. +...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33 4666788999999 7888773 4455667789999999988754
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.20 E-value=0.00072 Score=66.93 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=38.9
Q ss_pred ccccccch--HHHHHHHHHHhcCC----CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEE
Q 036714 134 ATLAGEKT--KKVVEEIWEDLMGD----KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 196 (932)
Q Consensus 134 ~~~vGr~~--~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 196 (932)
..+++.+. ...++.+..++... ....+.|+|++|+|||+||+.+++... .....++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh
Confidence 45665431 33455555555432 127899999999999999999999873 22334566654
No 220
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.19 E-value=0.0002 Score=73.61 Aligned_cols=61 Identities=31% Similarity=0.261 Sum_probs=27.9
Q ss_pred cCCceeEEEccCCCCcccC---ccccccccccccccccccccCCCCChhccc--cCcEeecccCCCc
Q 036714 539 YMHGLKVLNLSRTNIKVLP---SSVSDLMNLRSLLLRWCENLERVPSLAKLL--ALQYLDLEETGIE 600 (932)
Q Consensus 539 ~l~~L~~L~L~~~~~~~lp---~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~--~L~~L~l~~~~i~ 600 (932)
++++|+.|+|++|.++.++ ..+..+++|++|+|++|. ++.+..+..+. +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCc
Confidence 4555555555555554332 333445555555555432 22222222222 5555555555544
No 221
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.17 E-value=0.0039 Score=66.95 Aligned_cols=49 Identities=6% Similarity=0.198 Sum_probs=36.0
Q ss_pred EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHHH
Q 036714 287 VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTVA 338 (932)
Q Consensus 287 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 338 (932)
+.+++.+.++-.+++.+.+..... ....+.+..|+++++|.|..+..+.
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 789999999999999886532211 2235678899999999997654443
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.16 E-value=0.0055 Score=68.52 Aligned_cols=172 Identities=15% Similarity=0.180 Sum_probs=92.1
Q ss_pred ccccccch-HHHHHHHHHHhcCC---------CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
..++|.+. .+++.+++..+... -.+-|.|+|++|+|||+||+.+++... .. .+.+++++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~---~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN---VP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT---CC---EEEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC---CC---eeeCCHHHHHHH-
Confidence 67888733 23344444444321 134588999999999999999999762 12 233443322110
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------------ccccccCCCC--CCCC
Q 036714 204 KLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------------RLEEVGIPEP--SEEN 265 (932)
Q Consensus 204 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~ 265 (932)
. ..........++.......+.+|+||+++... .+..+...+. ....
T Consensus 89 -------------~--~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 -------------F--VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp -------------C--TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred -------------H--hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 00111223334444445678999999996421 1111111110 0123
Q ss_pred CcEEEEEeCCcccccc--c---cce-eEeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 266 GCKLVVTTRSVGICRS--M---GCK-EVRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 266 gs~iivTTR~~~v~~~--~---~~~-~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+..||.||...+.... . .-. .+.++..+.++-.+++..++..... .++. ....|++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--AEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTTC--CHHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--cchh--hHHHHHHhcCCCc
Confidence 5567777766543221 1 112 2778888887877888776644322 1111 1345788888877
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.13 E-value=0.00091 Score=71.20 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=34.6
Q ss_pred ccccccchHHHHHHHHHHhcC--------------CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG--------------DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|+ +..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQ--ADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSC--HHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCCh--HHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457888 5566666655532 234568899999999999999999876
No 224
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.13 E-value=0.00043 Score=73.81 Aligned_cols=59 Identities=15% Similarity=0.328 Sum_probs=38.3
Q ss_pred cccccchHHHHHHHHHHhcCC---------CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC
Q 036714 135 TLAGEKTKKVVEEIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 198 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 198 (932)
.++|. +..++.+...+... ....+.++|++|+|||++|+.+++.... .-...+.+.++.
T Consensus 18 ~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~---~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQ--DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRIDMTE 85 (311)
T ss_dssp TCCSC--HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS---CGGGEEEEEGGG
T ss_pred hcCCH--HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC---CCcceEEeeccc
Confidence 46676 44555555544321 1358999999999999999999998632 222345555543
No 225
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.10 E-value=0.00046 Score=70.89 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=49.4
Q ss_pred CCCCceEEEeecCCCccCCCh--hhhccCCceeEEEccCCCCcccCccccccc--cccccccccccccCCCCC-------
Q 036714 514 HCDILSTLLLQANGNLWTIPE--CFFVYMHGLKVLNLSRTNIKVLPSSVSDLM--NLRSLLLRWCENLERVPS------- 582 (932)
Q Consensus 514 ~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~------- 582 (932)
++++|++|+|++| .+..++. ..+..+++|++|+|++|.+..+. .+..+. +|++|+|++|......|.
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3456777777777 4544432 33467888888888888887662 344444 888888888775444431
Q ss_pred -hhccccCcEee
Q 036714 583 -LAKLLALQYLD 593 (932)
Q Consensus 583 -~~~l~~L~~L~ 593 (932)
+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 34455555554
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.06 E-value=0.00033 Score=72.94 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=32.9
Q ss_pred ccccccch-HHHHHHHHHHhcC---------CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|.+. .+.+.+++.++.. ...+-+.|+|++|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 67888744 2334444444321 113447899999999999999999976
No 227
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.95 E-value=0.0059 Score=64.13 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+..+.++|++|+|||+||+.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999999999999987
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.86 E-value=0.00082 Score=69.77 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=28.8
Q ss_pred ccccccchHHHHHHHHHHhc--CCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|++ ..+.++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 6 ~~~ig~~--~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEA--NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCC--HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCC--HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3577873 34444443332 1123567799999999999999999875
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.65 E-value=0.00091 Score=80.70 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=39.9
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 198 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 198 (932)
..++|. +..++.+...+.. . ....+.++|++|+|||++|+.+++... ......+.++.+.
T Consensus 491 ~~viGq--~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQ--DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSC--HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcCh--HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 468888 5566566555431 1 123799999999999999999999862 2223345555543
No 230
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.65 E-value=0.0018 Score=68.44 Aligned_cols=45 Identities=11% Similarity=0.277 Sum_probs=31.1
Q ss_pred cccccchHHHHHHHHHHhcC--CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|++ ..+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s--~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSS--PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCS--HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECC--HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 477873 344444444321 223457799999999999999999865
No 231
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.63 E-value=0.0067 Score=60.64 Aligned_cols=44 Identities=23% Similarity=0.144 Sum_probs=33.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQ 206 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 206 (932)
-.++.|+|++|+||||||..++. . . -..++|++.....+..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHH
Confidence 46899999999999999999998 2 1 2467888876655555443
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.59 E-value=0.018 Score=68.26 Aligned_cols=173 Identities=13% Similarity=0.133 Sum_probs=94.2
Q ss_pred ccccccch-HHHHHHHHHH-hcCC---------CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCH
Q 036714 134 ATLAGEKT-KKVVEEIWED-LMGD---------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYL 202 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~-L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 202 (932)
..+.|-+. .+.+.+++.+ |... .++-|.++|++|+|||+||+++++... . ..+.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg---~---~~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---A---FFFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT---C---EEEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---C---eEEEEEhHH----
Confidence 45667633 2344444444 3321 257899999999999999999998752 1 234443221
Q ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc--------c-----cccccC---CCCCCCCC
Q 036714 203 IKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF--------R-----LEEVGI---PEPSEENG 266 (932)
Q Consensus 203 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~-----~~~l~~---~~~~~~~g 266 (932)
+ .... .......+..++.......+.+|++|+++... . ...+.. .+. ...+
T Consensus 274 --l--------~sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-~~~~ 340 (806)
T 3cf2_A 274 --I--------MSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAH 340 (806)
T ss_dssp --H--------HSSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-GGGC
T ss_pred --h--------hccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-ccCC
Confidence 1 1111 12223345555665556779999999986421 0 011111 111 1223
Q ss_pred cEEEEEeCCcc-ccccc----ccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCcHH
Q 036714 267 CKLVVTTRSVG-ICRSM----GCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLPLA 333 (932)
Q Consensus 267 s~iivTTR~~~-v~~~~----~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 333 (932)
..||.||...+ +-... .-.. +++..-+.++-.++|+.+......... .....|++++.|.--|
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d----vdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD----VDLEQVANETHGHVGA 409 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT----CCHHHHHHHCCSCCHH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc----cCHHHHHHhcCCCCHH
Confidence 34555665432 22211 1222 888888888888888876643321111 1245678888887543
No 233
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.52 E-value=0.032 Score=57.13 Aligned_cols=146 Identities=12% Similarity=0.152 Sum_probs=73.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCe
Q 036714 160 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEK 239 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr 239 (932)
+.|+|++|+||||||+.+++... .. .+.+... .+ .... ..........+.+......+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~---~~---~i~~~~~------~~----~~~~------~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR---VP---FITASGS------DF----VEMF------VGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---CC---EEEEEHH------HH----HHSC------TTHHHHHHHHHHHHHTTSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CC---EEEeeHH------HH----HHHH------hhHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999998752 11 2333211 11 1000 01111223334444433456
Q ss_pred EEEEEecccccc----------------ccccccCCCCC--CCCCcEEEEEeCCcccccc-----cccee-EeccCCCHH
Q 036714 240 FVLILDDMWEAF----------------RLEEVGIPEPS--EENGCKLVVTTRSVGICRS-----MGCKE-VRVQPLSNE 295 (932)
Q Consensus 240 ~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~gs~iivTTR~~~v~~~-----~~~~~-~~l~~L~~~ 295 (932)
.++++|++.... ....+...+.. ......++.||...++... ..... +.++..+.+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 189 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHH
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHH
Confidence 899999995310 01111111111 1122344456665444321 12222 788888888
Q ss_pred HHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 296 EALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 296 ~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+-.+++...+..... .++ .....+++.+.|.-
T Consensus 190 ~r~~il~~~~~~~~~--~~~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 190 GREQILRIHARGKPL--AED--VDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHHTTSCB--CTT--CCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHcCCCC--Ccc--cCHHHHHHHcCCCC
Confidence 888888766532211 111 11345666776654
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.47 E-value=0.016 Score=66.53 Aligned_cols=46 Identities=35% Similarity=0.376 Sum_probs=32.2
Q ss_pred ccccccchHHHHHHHHHHhc------CCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLM------GDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. ++..+.+.+.+. ......+.++|++|+||||||+.++...
T Consensus 81 ~di~G~--~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGL--EKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSC--HHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccH--HHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 456776 444444433221 2235689999999999999999999986
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.28 E-value=0.047 Score=56.76 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=73.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCe
Q 036714 160 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEK 239 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr 239 (932)
+.|+|++|+||||||+.++.... . ..+.+... .+. ... ..........+.+......+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~---~---~~i~~~~~------~~~----~~~------~~~~~~~i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR---V---PFITASGS------DFV----EMF------VGVGAARVRDLFETAKRHAP 133 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---C---CEEEEEHH------HHH----HST------TTHHHHHHHHHHHHHHTSCS
T ss_pred EEEECCCcChHHHHHHHHHHHcC---C---CEEEecHH------HHH----HHH------hhHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999998752 1 12333211 111 000 00111223334444333456
Q ss_pred EEEEEecccccc----------------ccccccCCCCCC--CCCcEEEEEeCCcccccc-----cccee-EeccCCCHH
Q 036714 240 FVLILDDMWEAF----------------RLEEVGIPEPSE--ENGCKLVVTTRSVGICRS-----MGCKE-VRVQPLSNE 295 (932)
Q Consensus 240 ~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~iivTTR~~~v~~~-----~~~~~-~~l~~L~~~ 295 (932)
.++++|++.... .+..+...+... .....++.||...++... ..... +.++..+.+
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 213 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHH
Confidence 899999995310 011111111111 122344556665544321 11222 788888888
Q ss_pred HHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 296 EALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 296 ~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+-.+++...+..... .++ .....+++.+.|..
T Consensus 214 ~r~~il~~~~~~~~~--~~~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 214 GREQILRIHARGKPL--AED--VDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHHHTTSCB--CTT--CCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHccCCC--Ccc--cCHHHHHHHcCCCC
Confidence 888888766533211 111 11345666776654
No 236
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.21 E-value=0.018 Score=59.72 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=56.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc-----cchHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE-----NEDKVRRAGELLG 232 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 232 (932)
.++-|.|++|+||||||.+++...... ..-..++|++....++.. .+++++.+... ..+..+....+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 378999999999999999998876432 123578999988877754 36667654321 1122222122333
Q ss_pred HH---hcCCeEEEEEeccccc
Q 036714 233 ML---KAKEKFVLILDDMWEA 250 (932)
Q Consensus 233 ~l---~~~kr~LlVlDdv~~~ 250 (932)
.+ ..++.-+||+|-|...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 33 3567889999998653
No 237
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.20 E-value=0.0054 Score=57.04 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=29.7
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 198 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 198 (932)
.-..++|+|+.|+|||||++.+++.... ..+ .++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCC-cEEEEcHHH
Confidence 4578999999999999999999998732 222 255665443
No 238
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.17 E-value=0.0095 Score=66.97 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=34.2
Q ss_pred ccccccchHHHHH---HHHHHhcCCC--eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVE---EIWEDLMGDK--VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~---~l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. ++.++ .++..+..+. .+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~--~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQ--ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESC--HHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCH--HHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 679998 44433 4444444433 3578899999999999999999986
No 239
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.17 E-value=0.022 Score=57.73 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=53.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEEEEECCccCHHHHHHHHHHHHhcccc---------ccch--
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL---------ENED-- 222 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~-- 222 (932)
-.++.|+|++|+|||||+..++....... ..-..++|++....+...++. ++++.++.... ...+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 37999999999999999999998531110 023578888877655554443 34444443210 0111
Q ss_pred -HHHHHHHHHHHHhcCCeEEEEEecccc
Q 036714 223 -KVRRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 223 -~~~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
.......+...+...+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 111122233333335677888888754
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.12 E-value=0.0037 Score=65.21 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
+++.|+|++|+|||+||.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 57789999999999999999886
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.12 E-value=0.023 Score=60.61 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=41.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc---------CCC----cEEEEEEECCccCHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET---------NKF----NVVIWVTVSQPLYLIKLQTEIATALKQ 215 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~ 215 (932)
-.++.|+|.+|+|||+||.+++....... ... ..++|++....++..++.+ +++.++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 47899999999999999999987632110 111 5789999888877776653 4455544
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.11 E-value=0.019 Score=61.13 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=41.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEEEEECCccCHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLYLIKLQTEIATALKQ 215 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 215 (932)
-.++.|+|++|+||||||.+++....... ..-..++|++....++..++. ++++.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 47899999999999999999998642110 013578999988877776664 34555543
No 243
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.10 E-value=0.017 Score=61.91 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=52.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc-----cchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE-----NEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 231 (932)
-.++.|.|++|+||||||.+++..... .-..++|++....++.. .++.++..... ..+..+....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 379999999999999999999988632 22357888877766644 45555543211 112222222222
Q ss_pred HHHhcCCeEEEEEecccc
Q 036714 232 GMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~~ 249 (932)
......+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 222234556889998754
No 244
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.08 E-value=0.03 Score=60.16 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=41.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccC---CCcEEEEEEECCccCHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETN---KFNVVIWVTVSQPLYLIKLQTEIATALKQ 215 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 215 (932)
-.++.|+|++|+||||||.+++........ .-..++|++....++..++. +++..++.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 478999999999999999999987422110 23578999988877776654 34455543
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.06 E-value=0.045 Score=61.48 Aligned_cols=172 Identities=14% Similarity=0.157 Sum_probs=86.4
Q ss_pred ccccccch-HHHHHHHHHHhcCC---------CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 134 ATLAGEKT-KKVVEEIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 134 ~~~vGr~~-~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
..++|.+. ...+.++...+... -.+-|.|+|++|+||||||+.+++... . ..+.++.++-...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---~---~~i~i~g~~~~~~- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---V---PFITASGSDFVEM- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT---C---CEEEEEGGGGTSS-
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---C---CEEEEehhHHHHh-
Confidence 67889743 23344455544321 123489999999999999999998752 1 2334443321110
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccccc----------------ccccccCCCC--CCCC
Q 036714 204 KLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWEAF----------------RLEEVGIPEP--SEEN 265 (932)
Q Consensus 204 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~ 265 (932)
. .......+..+++......+.++++|++.... .+..+...+. ....
T Consensus 104 -------------~--~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 104 -------------F--VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp -------------C--TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred -------------h--hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc
Confidence 0 00011112222222112235799999995321 0111111111 1123
Q ss_pred CcEEEEEeCCcccccc-----cccee-EeccCCCHHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHHcCCCc
Q 036714 266 GCKLVVTTRSVGICRS-----MGCKE-VRVQPLSNEEALNLFLDKVGSSTLQIPTLDKKIINLVVEECAGLP 331 (932)
Q Consensus 266 gs~iivTTR~~~v~~~-----~~~~~-~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 331 (932)
+..|+.||+..++... ..... +.+...+.++-.+++..++..... .++ .....|++.+.|..
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l--~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--AED--VDLALLAKRTPGFV 236 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC--CCS--STTHHHHTTSCSCC
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC--ChH--HHHHHHHHhcCCCC
Confidence 4455566666544221 11222 788888888888888766532211 111 11345677777765
No 246
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.04 E-value=0.014 Score=63.87 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=84.2
Q ss_pred cCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCcccCc-cccccccccccccccccccCCCC--Ch
Q 036714 507 IPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIKVLPS-SVSDLMNLRSLLLRWCENLERVP--SL 583 (932)
Q Consensus 507 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp--~~ 583 (932)
+....+..+.+|+.+.+..+ +..++...|.++..|+.+.+..+ ++.+.. .+..+.+|+.+.+.. .++.++ .|
T Consensus 208 i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF 282 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLC 282 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTT
T ss_pred Eeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccc
Confidence 33445556677777776543 55566666677777777777654 444433 345566777777753 355555 47
Q ss_pred hccccCcEeecccCCCccccc-ccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEee
Q 036714 584 AKLLALQYLDLEETGIEEVPE-GMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLS 642 (932)
Q Consensus 584 ~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 642 (932)
.++.+|+.+.+.++.++.++. .+..+.+|+.+.+..+ ++.+....|.++++|+.+.+.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 777778887777777776643 4566777887777543 666766667777777776664
No 247
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.94 E-value=0.011 Score=62.98 Aligned_cols=44 Identities=9% Similarity=0.103 Sum_probs=32.8
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
.-..++|+|++|+|||||++.+.+........+.++ ++-+++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence 457899999999999999999988764433445444 56677654
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.93 E-value=0.017 Score=69.52 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=68.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKA 236 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 236 (932)
...|.|+|++|+||||||+.+++... .. .+.++.++ +.... ..........+++....
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~---~~---~i~v~~~~--------------l~~~~--~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETG---AF---FFLINGPE--------------IMSKL--AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTT---CE---EEEEEHHH--------------HSSSS--TTHHHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC---Cc---EEEEEchH--------------hhhhh--hhhHHHHHHHHHHHHHh
Confidence 46799999999999999999988651 11 23333211 10000 11112233334444434
Q ss_pred CCeEEEEEecccccc----------------ccccccCCCCCCCCCcEEEEEeCCcc-ccccc----ccee-EeccCCCH
Q 036714 237 KEKFVLILDDMWEAF----------------RLEEVGIPEPSEENGCKLVVTTRSVG-ICRSM----GCKE-VRVQPLSN 294 (932)
Q Consensus 237 ~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~~~gs~iivTTR~~~-v~~~~----~~~~-~~l~~L~~ 294 (932)
..+.++++|++.... .+-.+..... ...+..+|.||...+ +.... .-.. +.+...+.
T Consensus 296 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCH
T ss_pred cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHHhcccccccccccCCCCH
Confidence 467899999995321 0111111111 123445666665532 22111 1112 67888888
Q ss_pred HHHHHHHHHhhCC
Q 036714 295 EEALNLFLDKVGS 307 (932)
Q Consensus 295 ~~~~~lf~~~~~~ 307 (932)
++-.+++...+..
T Consensus 375 ~~r~~il~~~~~~ 387 (806)
T 1ypw_A 375 TGRLEILQIHTKN 387 (806)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhc
Confidence 8888888876543
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.68 E-value=0.012 Score=56.69 Aligned_cols=113 Identities=19% Similarity=0.042 Sum_probs=58.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC---ccCHHHHHHHHHHHHhcc---------ccccc--h
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLYLIKLQTEIATALKQS---------LLENE--D 222 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~~~---------~~~~~--~ 222 (932)
-..|-|++..|.||||.|-..+-+.. .+--.+.++..-. ......++. .+... +.... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l~----~L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLLE----PHGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHHG----GGTCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHHH----hCCcEEEEcccccccCCCCcHH
Confidence 35677777788999999999988763 3334566664333 222333333 33210 00100 0
Q ss_pred HHH----HHHHHHHHHhcCCeEEEEEeccccc-----cccccccCCCCCCCCCcEEEEEeCCc
Q 036714 223 KVR----RAGELLGMLKAKEKFVLILDDMWEA-----FRLEEVGIPEPSEENGCKLVVTTRSV 276 (932)
Q Consensus 223 ~~~----~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTTR~~ 276 (932)
... ......+.+..++-=|||||++-.. ...+++...+........||+|+|..
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 111 1222333333455569999998431 22222222222223456799999984
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.62 E-value=0.011 Score=58.67 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcC--CCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 143 KVVEEIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 143 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
+..++|.+.+.. ....+|+|+|+.|.|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445566666653 4568999999999999999999998763
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.58 E-value=0.014 Score=70.54 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=33.6
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. +..++.+...+.. . ....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~--~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQ--DKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSC--HHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCH--HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 457887 5566555554431 1 23479999999999999999999876
No 252
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.57 E-value=0.071 Score=53.41 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=32.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEEEEECCccCH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLYL 202 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~ 202 (932)
-.+++|+|+.|+|||||++.++....... .....++|+........
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 47999999999999999999987542110 12345788876554443
No 253
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.56 E-value=0.032 Score=59.83 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=52.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc----cchHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE----NEDKVRRAGELLG 232 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 232 (932)
-.++.|.|++|+||||||.+++..... .-..++|++....++.. .++.++..... ..........+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 478999999999999999999987632 23468899887766543 24555543211 0111222222333
Q ss_pred HHh-cCCeEEEEEecccc
Q 036714 233 MLK-AKEKFVLILDDMWE 249 (932)
Q Consensus 233 ~l~-~~kr~LlVlDdv~~ 249 (932)
.+. ..+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 333 34466999999854
No 254
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.47 E-value=0.031 Score=57.89 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=65.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCe
Q 036714 160 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEK 239 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr 239 (932)
+.++|++|+||||||+.++.... . ..+.+..++-.+.. .......+..+.+......+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~---~---~~i~i~g~~l~~~~----------------~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG---L---NFISVKGPELLNMY----------------VGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT---C---EEEEEETTTTCSST----------------THHHHHHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcC---C---CEEEEEcHHHHhhh----------------hhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998752 1 23444433221100 00011122233333223457
Q ss_pred EEEEEeccccccc---------cc----cccCCCC--CCCCCcEEEEEeCCccccccc-----ccee-EeccCCCHHHHH
Q 036714 240 FVLILDDMWEAFR---------LE----EVGIPEP--SEENGCKLVVTTRSVGICRSM-----GCKE-VRVQPLSNEEAL 298 (932)
Q Consensus 240 ~LlVlDdv~~~~~---------~~----~l~~~~~--~~~~gs~iivTTR~~~v~~~~-----~~~~-~~l~~L~~~~~~ 298 (932)
.++++|++..... .. .+...+. ......-++.+|...++.... .-.. +.++.-+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 8999999864210 00 0000011 012233455666665543221 1222 677777888888
Q ss_pred HHHHHhhC
Q 036714 299 NLFLDKVG 306 (932)
Q Consensus 299 ~lf~~~~~ 306 (932)
++|+....
T Consensus 185 ~il~~~~~ 192 (274)
T 2x8a_A 185 AILKTITK 192 (274)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88877653
No 255
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.47 E-value=0.054 Score=59.09 Aligned_cols=92 Identities=11% Similarity=0.151 Sum_probs=54.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc---CCCcEEEEEEECCccCHHHHHHHHHHHHhcccc---------cc---c
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL---------EN---E 221 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~---~ 221 (932)
-.++.|+|++|+|||||+..++-...... ..-..++|++....+...++ ..+++.++.... .. .
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 37999999999999999998764431111 13456888887776665554 335555553211 00 1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEecccc
Q 036714 222 DKVRRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 222 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
.......+....+...+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 1122223333333345677888888643
No 256
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.38 E-value=0.022 Score=60.09 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=33.0
Q ss_pred ccccccch--HHHHHHHHHHhcCC---CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 134 ATLAGEKT--KKVVEEIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 134 ~~~vGr~~--~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..|++... ....+.+.+++... ....+.|+|++|+|||+||..+++...
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45554321 23344444555431 247889999999999999999999873
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.30 E-value=0.045 Score=58.98 Aligned_cols=85 Identities=22% Similarity=0.205 Sum_probs=52.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc----cchHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE----NEDKVRRAGELLG 232 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 232 (932)
-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++.+... ..+..+.......
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 368889999999999999999887632 22468999888766643 24445443210 1111222223333
Q ss_pred HHhc-CCeEEEEEecccc
Q 036714 233 MLKA-KEKFVLILDDMWE 249 (932)
Q Consensus 233 ~l~~-~kr~LlVlDdv~~ 249 (932)
.+.+ .+.-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 3333 4456899998853
No 258
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.29 E-value=0.04 Score=59.18 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=51.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc----cchHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE----NEDKVRRAGELLG 232 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 232 (932)
-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .+..++.+... ..+.........+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 478999999999999999999987642 22368899887776643 24445443211 0111122222333
Q ss_pred HHh-cCCeEEEEEecccc
Q 036714 233 MLK-AKEKFVLILDDMWE 249 (932)
Q Consensus 233 ~l~-~~kr~LlVlDdv~~ 249 (932)
.+. ..+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 332 24456899998753
No 259
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.27 E-value=0.0093 Score=60.95 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
-.+++|+|+.|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 478999999999999999999843
No 260
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.25 E-value=0.074 Score=58.41 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...||.++|.+|+||||++..++....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999998874
No 261
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.24 E-value=0.011 Score=72.12 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=33.1
Q ss_pred cccccchHHHHHHHHHHhcC-------C--CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|. +..++.+...+.. . ....+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~--~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQ--DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSC--HHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCc--HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46887 5555555554421 1 13588999999999999999999986
No 262
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.10 E-value=0.041 Score=55.31 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=28.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEEC
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 197 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 197 (932)
-.+++|+|++|+|||||++.++...... -..+.|+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcc
Confidence 3689999999999999999999765322 1246666543
No 263
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.92 E-value=0.068 Score=58.85 Aligned_cols=90 Identities=18% Similarity=0.319 Sum_probs=50.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhc-------cccccchHHHH---
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQ-------SLLENEDKVRR--- 226 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~--- 226 (932)
..++|+|.+|+|||||++.+....... ..+..+++.+++.. ...++..++.+.-.. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 468999999999999999999876332 22345666666654 334444444322000 01111111111
Q ss_pred --HHHHHHHHh--cCCeEEEEEecccc
Q 036714 227 --AGELLGMLK--AKEKFVLILDDMWE 249 (932)
Q Consensus 227 --~~~l~~~l~--~~kr~LlVlDdv~~ 249 (932)
...+.+.+. +++++|+++||+..
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 112222222 58999999999954
No 264
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.91 E-value=0.1 Score=55.99 Aligned_cols=156 Identities=10% Similarity=-0.020 Sum_probs=92.9
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLENEDKVRRAGELLGMLK 235 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 235 (932)
-.++..++|+.|.||++.|+.+.+.... ..|+....+.+....++.++...+. ...+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~--------------------~~pl- 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAA--QGFEEHHTFSIDPNTDWNAIFSLCQ--------------------AMSL- 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHH--HTCCEEEEEECCTTCCHHHHHHHHH--------------------HHHH-
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHh--CCCCeeEEEEecCCCCHHHHHHHhc--------------------CcCC-
Confidence 4689999999999999999999987632 2343222223333344444332210 0112
Q ss_pred cCCeEEEEEecccc-c--cccccccCCCCCCCCCcEEEEEeCCc-------cccccc--cceeEeccCCCHHHHHHHHHH
Q 036714 236 AKEKFVLILDDMWE-A--FRLEEVGIPEPSEENGCKLVVTTRSV-------GICRSM--GCKEVRVQPLSNEEALNLFLD 303 (932)
Q Consensus 236 ~~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~iivTTR~~-------~v~~~~--~~~~~~l~~L~~~~~~~lf~~ 303 (932)
-+++-++|+|+++. . ...+.+...+....+++.+|++|... .+.... .+..++..+++.++....+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 34567888999865 2 33343433333234577777766431 222221 122388899999998888887
Q ss_pred hhCCCCCCCChhhHHHHHHHHHHcCCCcHHHHHH
Q 036714 304 KVGSSTLQIPTLDKKIINLVVEECAGLPLAIVTV 337 (932)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 337 (932)
.+..... .-..+.+..+++.++|.+..+...
T Consensus 154 ~~~~~g~---~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLNL---ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTTC---EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcCC---CCCHHHHHHHHHHhchHHHHHHHH
Confidence 6643221 223567888999999988877653
No 265
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.89 E-value=0.12 Score=53.81 Aligned_cols=28 Identities=29% Similarity=0.140 Sum_probs=24.9
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
....+|+|+|+.|+||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999998774
No 266
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.80 E-value=0.006 Score=56.34 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=28.0
Q ss_pred cccccchHHHHHHHHHHhc---CCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|++ ..++++.+.+. ... .-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s--~~~~~l~~~~~~~~~~~-~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNS--AAIQEMNREVEAAAKRT-SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCC--HHHHHHHHHHHHHHTCS-SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCC--HHHHHHHHHHHHHhCCC-CcEEEECCCCccHHHHHHHHHHhC
Confidence 467773 34444444432 222 347799999999999999988754
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.73 E-value=0.017 Score=54.94 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=22.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 268
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.72 E-value=0.032 Score=54.83 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcC---CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 143 KVVEEIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 143 ~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.++.+.+.+.. ....+|+|+|+.|+||||+++.+....
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345556555543 346899999999999999999999876
No 269
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.62 E-value=0.12 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..+|+|+|++|+||||++..++....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 57999999999999999999998874
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.61 E-value=0.018 Score=55.18 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=22.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999875
No 271
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.57 E-value=0.12 Score=56.79 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=24.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..+|.++|++|+||||++..++....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998874
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.56 E-value=0.078 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..+|+|+|++|+||||++..++....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998873
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.45 E-value=0.022 Score=55.91 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=23.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|.|+|++|+||||+|+.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.43 E-value=0.02 Score=54.70 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
.+|+|.|++|+||||+|+.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 44
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.29 E-value=0.025 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+.|.|+|++|+||||+|+.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.27 E-value=0.13 Score=55.23 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=36.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCC---CcEEEEEEECCccCHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
-.++.|+|++|+|||||+.+++......... -..++|++....+...++ ..+++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~ 188 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQN 188 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHH
Confidence 4799999999999999999999875211111 135688887665443333 334443
No 277
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.24 E-value=0.024 Score=54.58 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=22.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999999864
No 278
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.22 E-value=0.17 Score=55.72 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..++|.++|.+|+||||++..++....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999998874
No 279
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.18 E-value=0.024 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
..+|+|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.17 E-value=0.31 Score=51.57 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=36.0
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC-ccCHHHHHHHHHHHHh
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLYLIKLQTEIATALK 214 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~ 214 (932)
....+++|+|+.|+||||+++.++..... ... .+.++...- .....+-+....+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g-~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGF-SVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTC-CEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCC-EEEEEeecccccchHHHHHHHHHHcC
Confidence 34689999999999999999999987732 222 344443321 1223333444555555
No 281
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.16 E-value=0.029 Score=55.01 Aligned_cols=28 Identities=36% Similarity=0.407 Sum_probs=25.0
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
....+|+|+|+.|+||||+|+.++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999998873
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.14 E-value=0.027 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINN 179 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~ 179 (932)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.12 E-value=0.023 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999875
No 284
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.11 E-value=0.016 Score=61.54 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=35.4
Q ss_pred HHHHHhcC-CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 147 EIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 147 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
++++.+.. ..-..++|+|.+|+|||+|+.++.+........+.+ +++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 34455442 345789999999999999999999876433344443 45666654
No 285
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.11 E-value=0.23 Score=54.53 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=39.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATA 212 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~ 212 (932)
-..++|+|..|+|||+|+.++.+... +.+-+.++++-+++.. .+.++.+++.+.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 47799999999999999999998752 2344667778777765 345666666543
No 286
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.04 E-value=0.066 Score=48.20 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=36.1
Q ss_pred eeeccccccc--ccCCCcCCCCCCceEEEeecCCCccCCChhhhccCCceeEEEccCCCCc
Q 036714 496 RVSLMMNDIE--EIPSYMSPHCDILSTLLLQANGNLWTIPECFFVYMHGLKVLNLSRTNIK 554 (932)
Q Consensus 496 ~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 554 (932)
.++.++++++ .+|..+. ++|+.|+|++| .+..+|...|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 4555566665 6654322 35777777777 677777777777777777777777653
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.04 E-value=0.032 Score=54.21 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
.+|.|.|++|+||||+|+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999873
No 288
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.01 E-value=0.72 Score=51.41 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=35.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIA 210 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 210 (932)
-.++.|.|.+|+||||||.+++...... .-..++|++... +...+...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHH
Confidence 3689999999999999999999887422 223577776544 3455555443
No 289
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.97 E-value=0.038 Score=53.42 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=24.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...+|.|.|++|+||||+++.++....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999873
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.94 E-value=0.026 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 291
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.93 E-value=0.033 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.481 Sum_probs=23.5
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|+|+.|+||||+++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999999865
No 292
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.86 E-value=0.047 Score=54.59 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 146 EEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 146 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344444444567899999999999999999999875
No 293
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.84 E-value=0.14 Score=53.39 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..+++|+|.+|+||||++..++....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999998874
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.81 E-value=0.04 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999875
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.80 E-value=0.11 Score=52.56 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=29.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 198 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 198 (932)
-.++.|.|++|+||||||.+++..... .-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 368999999999999999988876532 223577776554
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.76 E-value=0.036 Score=56.62 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=22.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999999875
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.76 E-value=0.036 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999976
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.75 E-value=0.031 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|.|+|++|+||||+|+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999875
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.74 E-value=0.15 Score=53.15 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=47.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc-cCHHHHHHHHHHHHhccccc---cchHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LYLIKLQTEIATALKQSLLE---NEDKVRRAGELLG 232 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 232 (932)
..+|+++|.+|+||||++..++..... .-..+.++..... ....+.+....+..+.+... ..+........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 478999999999999999999988742 2234555554322 22223334444444433211 1223333334444
Q ss_pred HHhcCCeEEEEEecc
Q 036714 233 MLKAKEKFVLILDDM 247 (932)
Q Consensus 233 ~l~~~kr~LlVlDdv 247 (932)
.+..+..=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443223336777864
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.73 E-value=0.039 Score=52.66 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 301
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.73 E-value=1.7 Score=48.24 Aligned_cols=51 Identities=12% Similarity=-0.054 Sum_probs=36.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIAT 211 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 211 (932)
-.++.|.|.+|+||||||.+++..... ..-..++|++... +...+...+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCC--CHHHHHHHHHH
Confidence 368999999999999999999988642 1233577776553 45566655543
No 302
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.67 E-value=0.038 Score=59.14 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=34.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|+ ++.++.+...+..+ .-+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~--~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQ--KYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSC--HHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCc--HHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 357787 55667676666543 468899999999999999999875
No 303
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.67 E-value=0.27 Score=51.87 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=37.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
-.++.|.|.+|+||||||.+++..... .. ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~--~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD--ND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT--TT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 378999999999999999999977632 22 577887755 4455666655543
No 304
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.63 E-value=0.044 Score=54.60 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 144 VVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 144 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444444444467899999999999999999999875
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.62 E-value=0.036 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.61 E-value=0.034 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 307
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.61 E-value=0.04 Score=52.18 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999876
No 308
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.54 E-value=0.42 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.3
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...+|+|+|.+|+||||++..++....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999998874
No 309
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.52 E-value=0.062 Score=58.28 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=33.2
Q ss_pred cccccchHHHHHHHHHHhc-------------C--CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLM-------------G--DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|. +..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQ--EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSC--HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCH--HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46787 556666655551 1 124678999999999999999999875
No 310
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.50 E-value=0.095 Score=47.12 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=41.9
Q ss_pred cEeecccCCCc--ccccccccCCCCCEEeCCCCCCcccCCCccCCCCCcceEEeec
Q 036714 590 QYLDLEETGIE--EVPEGMEMLENLSHLYLSSPRLKKFPTGILPRLRNLYKLKLSF 643 (932)
Q Consensus 590 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 643 (932)
..++-++++++ .+|..+ ..+|++|+|++|.++.+|.+.|..+++|+.|+|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 36777777887 888654 24789999999999999988888899999998883
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.49 E-value=0.042 Score=53.93 Aligned_cols=23 Identities=48% Similarity=0.796 Sum_probs=21.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 312
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.46 E-value=0.039 Score=59.53 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=32.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. +..+..+..........-|.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~--~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQ--EDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSC--HHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccCh--HHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 678998 4344444333333333448999999999999999999876
No 313
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.45 E-value=0.04 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.3
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999865
No 314
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.44 E-value=0.043 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINN 179 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~ 179 (932)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 315
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.43 E-value=0.29 Score=53.95 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=39.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC-HHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY-LIKLQTEIAT 211 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~ 211 (932)
-..++|.|..|+|||+|+.++.+... +.+-+.++++-+++... ..++..++.+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 46799999999999999999998752 23456788888877653 5566666654
No 316
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.43 E-value=0.035 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 317
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.41 E-value=0.08 Score=56.08 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.1
Q ss_pred hcCCCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 152 LMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 152 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
+..+....|.|+|++|+||||+++.++....
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3455677899999999999999999998763
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.36 E-value=0.048 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|++|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.35 E-value=0.045 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
...|+|+|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999986
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.35 E-value=0.035 Score=53.68 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999875
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.34 E-value=0.045 Score=54.80 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=22.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999865
No 322
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.34 E-value=0.051 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=24.0
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.+||.|.|++|+||||.|+.+++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999876
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.34 E-value=0.048 Score=53.09 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|++|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 324
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.31 E-value=0.038 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|.|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4789999999999999999998875
No 325
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.29 E-value=0.05 Score=53.15 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|++|+||||+|+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 326
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.27 E-value=0.051 Score=53.25 Aligned_cols=25 Identities=28% Similarity=0.354 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
...+|+|+|+.|+||||+|+.+.+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999874
No 327
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.24 E-value=0.051 Score=52.03 Aligned_cols=23 Identities=52% Similarity=0.725 Sum_probs=21.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.22 E-value=0.053 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|+|.|++|+||||+|+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999865
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.21 E-value=0.057 Score=53.01 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999999764
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.20 E-value=0.047 Score=53.63 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINN 179 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~ 179 (932)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 331
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.18 E-value=0.046 Score=57.65 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=29.8
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEEC
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 197 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 197 (932)
++.+||+|.|-|||||||.|..++--.... -..+.-|+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~---GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL---GKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 357999999999999999999999887432 2235555544
No 332
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.18 E-value=0.078 Score=57.83 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999875
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.16 E-value=0.047 Score=53.73 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 334
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.15 E-value=0.051 Score=53.74 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999999875
No 335
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.15 E-value=0.044 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=22.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 336
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.14 E-value=0.039 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEIN 178 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~ 178 (932)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 337
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.12 E-value=0.13 Score=66.54 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=54.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcccc-----ccchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL-----ENEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 231 (932)
.++|.|+|++|+|||+||.++..... ..-..++|+++...++... ++.++.+.. ...+..+....+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 57999999999999999999998763 2344678888877766554 445552211 1111222222222
Q ss_pred HHHhcCCeEEEEEeccc
Q 036714 232 GMLKAKEKFVLILDDMW 248 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~ 248 (932)
+.....+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 22234567899999995
No 338
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.11 E-value=0.057 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
.++++|+|..|+|||||+..+.....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 57999999999999999999998873
No 339
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.09 E-value=0.053 Score=52.57 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=23.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 35789999999999999999999765
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.09 E-value=0.058 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.07 E-value=0.056 Score=53.39 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 342
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.06 E-value=0.47 Score=50.20 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=36.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATA 212 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 212 (932)
.++.|.|.+|+||||||..++..... .-..++|++.. .+..++...++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 68999999999999999999988743 33467777654 4456666665543
No 343
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.99 E-value=0.092 Score=50.76 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=27.9
Q ss_pred HHHHHHHhcC-CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 145 VEEIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 145 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+..+..++.+ +....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555543 123479999999999999999999986
No 344
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.99 E-value=0.043 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3679999999999999999998865
No 345
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.97 E-value=0.055 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=23.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|+|+.|+|||||++.+++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999999775
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.92 E-value=0.057 Score=53.22 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|+|++|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999998753
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.91 E-value=0.059 Score=52.82 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|.|.|++|+||||+|+.+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.89 E-value=0.06 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 349
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.88 E-value=0.08 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998764
No 350
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.88 E-value=0.05 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998765
No 351
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.87 E-value=0.06 Score=52.25 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36799999999999999999998863
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.86 E-value=0.061 Score=52.25 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=21.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.80 E-value=0.051 Score=53.48 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINN 179 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~ 179 (932)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 354
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.77 E-value=0.057 Score=60.71 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=33.5
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 135 TLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 135 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|+ ++.++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq--~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYER--SHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSC--HHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHH--HHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 46787 55666666665543 468899999999999999999865
No 355
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.75 E-value=0.047 Score=52.50 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=18.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998865
No 356
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.74 E-value=0.064 Score=55.04 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 357
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.68 E-value=0.068 Score=52.78 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=26.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcE
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV 190 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 190 (932)
..+|+|.|+.|+||||+|+.+.+... ..+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~--~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK--NNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999998863 235555
No 358
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.58 E-value=0.064 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999865
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.56 E-value=0.069 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 360
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.54 E-value=0.075 Score=52.57 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=26.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcE
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV 190 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 190 (932)
..+|+|.|+.|+||||+|+.+.+... ..+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~--~~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC--AAGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999999863 234554
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.48 E-value=0.11 Score=54.52 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.1
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...+|+|+|++|+||||+++.++....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999998873
No 362
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.46 E-value=0.076 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.5
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34799999999999999999999875
No 363
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.42 E-value=0.086 Score=53.82 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999999875
No 364
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.42 E-value=0.047 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=22.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
.+|+|.|+.|+||||+|+.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998873
No 365
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.41 E-value=0.076 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999986
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.37 E-value=0.069 Score=54.47 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=23.3
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|+|+.|+||||+++.+++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34799999999999999999999775
No 367
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.37 E-value=0.36 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..+|.|+|++|+||||++..++....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999874
No 368
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.33 E-value=0.06 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999864
No 369
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.32 E-value=0.076 Score=55.91 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=24.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...+|+|+|+.|+|||||++.+..-..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 467999999999999999999998763
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.26 E-value=0.072 Score=54.11 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|+.|+|||||++.+....
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998865
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.25 E-value=0.079 Score=54.05 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.5
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998865
No 372
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.24 E-value=0.083 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|.|.|++|+||||+|+.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 373
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.22 E-value=0.079 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|.|.|++|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999864
No 374
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.17 E-value=0.061 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
++++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999998873
No 375
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.09 E-value=0.082 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.05 E-value=0.08 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|.|.|++|+||||+|+.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.96 E-value=0.084 Score=52.44 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|+|||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999999999999999865
No 378
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.95 E-value=0.12 Score=54.26 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.3
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|.|+.|+||||+|+.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999998876
No 379
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.93 E-value=0.098 Score=53.01 Aligned_cols=26 Identities=19% Similarity=0.136 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 380
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.89 E-value=0.099 Score=51.65 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.6
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|.|.|+.|+||||+|+.+....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999876
No 381
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.86 E-value=0.32 Score=53.13 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=51.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCc----EEEEEEECCcc-CHHHHHHHHHHH--Hhc-----cccccchHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFN----VVIWVTVSQPL-YLIKLQTEIATA--LKQ-----SLLENEDKVR 225 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~~ 225 (932)
.-++|.|..|+|||+|+.++++... .+.+ .++++-+++.. .+.++..++.+. +.. ...++.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~---~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQAT---VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCB---CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHH---hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 5578999999999999999998752 2223 56666666543 455565555443 110 1111111111
Q ss_pred -----HHHHHHHHHh--cCCeEEEEEecccc
Q 036714 226 -----RAGELLGMLK--AKEKFVLILDDMWE 249 (932)
Q Consensus 226 -----~~~~l~~~l~--~~kr~LlVlDdv~~ 249 (932)
....+.+.+. .++.+|+++||+-.
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1122223333 37999999999854
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.84 E-value=0.1 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 383
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.81 E-value=0.092 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999875
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.79 E-value=0.099 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 385
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.79 E-value=0.1 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=21.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+|.|.|++|+||||.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 386
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.78 E-value=0.092 Score=57.75 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=32.9
Q ss_pred ccccccchHHHHHHHHHHhcC--------------CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG--------------DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. ++.++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGq--e~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQ--ADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSC--HHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCH--HHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 457887 5555555444311 124568999999999999999999876
No 387
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.78 E-value=0.086 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998864
No 388
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.69 E-value=0.085 Score=53.50 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=22.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+|+|+|+.|+||||+++.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999876
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.67 E-value=0.089 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998873
No 390
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.64 E-value=0.28 Score=52.73 Aligned_cols=36 Identities=22% Similarity=0.565 Sum_probs=28.2
Q ss_pred HHHHHHhc--CCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 146 EEIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 146 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+...+. .....+|+|+|.+|+|||||+..+....
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 3457899999999999999999999876
No 391
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.64 E-value=0.11 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=23.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++++|+|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999876
No 392
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.63 E-value=0.1 Score=51.18 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=22.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999875
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.44 E-value=0.12 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.44 E-value=0.12 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=22.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..|.|.|++|+||||+|+.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 395
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.41 E-value=0.12 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINN 179 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~ 179 (932)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 396
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.24 E-value=0.31 Score=53.22 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=51.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhcc-------CCCc-EEEEEEECCcc-CHHHHHHHHHHH--Hhc-----ccccc
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKET-------NKFN-VVIWVTVSQPL-YLIKLQTEIATA--LKQ-----SLLEN 220 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~ 220 (932)
-.-++|.|..|+|||+|+.++++...... ++-+ .++++-+++.. .+.++..++.+. +.. ...++
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 35678999999999999999998752110 1111 56666666543 344555554332 110 11111
Q ss_pred chHHH-----HHHHHHHHHh--cCCeEEEEEecccc
Q 036714 221 EDKVR-----RAGELLGMLK--AKEKFVLILDDMWE 249 (932)
Q Consensus 221 ~~~~~-----~~~~l~~~l~--~~kr~LlVlDdv~~ 249 (932)
..... ......+.+. .++.+|+++||+-.
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11111 1122223333 37899999999854
No 397
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.24 E-value=0.073 Score=53.50 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=16.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHH-HHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEIN-NRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 181 (932)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 398
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.21 E-value=0.12 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.20 E-value=0.11 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINN 179 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~ 179 (932)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 400
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.17 E-value=0.064 Score=53.24 Aligned_cols=112 Identities=16% Similarity=-0.004 Sum_probs=57.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcccccc--chHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLEN--EDKVRRAGELLGML 234 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l 234 (932)
-.++.|+|..|.||||++..++++... ... .++.+....... -...++..++...... ....+....+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~--~g~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY--ADV-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--TTC-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh--cCC-EEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 478899999999999999999988732 222 334443322211 1123344444322110 11111111111111
Q ss_pred hcCCeEEEEEeccccc--cccccccCCCCCCCCCcEEEEEeCCcc
Q 036714 235 KAKEKFVLILDDMWEA--FRLEEVGIPEPSEENGCKLVVTTRSVG 277 (932)
Q Consensus 235 ~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTTR~~~ 277 (932)
..++.-+||+|.+... +.++.+.. +. ..|..||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEecccc
Confidence 1233559999999752 22222211 11 12678999998654
No 401
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.15 E-value=0.12 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++|.|+|+.|+||||||+.+++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999875
No 402
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.09 E-value=0.12 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|+|+.|.|||||++.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999988653
No 403
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.08 E-value=0.11 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999999765
No 404
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.06 E-value=0.13 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|+|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999865
No 405
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.04 E-value=0.16 Score=53.11 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..+++|+|+.|+||||+++.++....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999998873
No 406
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.95 E-value=0.38 Score=52.85 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=53.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccC-CCcEEEEEEECCcc-CHHHHHHHHHHHHhcc-------ccccchHH---
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETN-KFNVVIWVTVSQPL-YLIKLQTEIATALKQS-------LLENEDKV--- 224 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 224 (932)
-.-++|.|..|+|||+|+.++++....... .-+.++++-+++.. .+.++..++...=... ..++....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 456788999999999999999987631111 12456677666554 4556666655431111 11111111
Q ss_pred --HHHHHHHHHHh--cCCeEEEEEecccc
Q 036714 225 --RRAGELLGMLK--AKEKFVLILDDMWE 249 (932)
Q Consensus 225 --~~~~~l~~~l~--~~kr~LlVlDdv~~ 249 (932)
.....+.+.+. +++.+|+++||+..
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 11112223332 57999999999843
No 407
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.95 E-value=0.52 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..+++|+|..|+|||||++.++....
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 57999999999999999999998763
No 408
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.94 E-value=0.39 Score=53.07 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=49.5
Q ss_pred eeEEEEEeCCCChHHHHH-HHHHHHHhhccCCCc-EEEEEEECCcc-CHHHHHHHHHHHHhc-------cccccchHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFN-VVIWVTVSQPL-YLIKLQTEIATALKQ-------SLLENEDKVRR 226 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~ 226 (932)
-.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+++.. .+.++.+.+.+.=.. ...++......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 467899999999999995 5777753 234 34677777654 344555555432111 11111111111
Q ss_pred -----HHHHHHHHh-cCCeEEEEEecccc
Q 036714 227 -----AGELLGMLK-AKEKFVLILDDMWE 249 (932)
Q Consensus 227 -----~~~l~~~l~-~~kr~LlVlDdv~~ 249 (932)
...+-+.+. +++.+|+++||+..
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 111112121 57899999999854
No 409
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.85 E-value=0.14 Score=51.54 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|.|.|++|+||||+|+.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 410
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.82 E-value=0.11 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|+|+.|+|||||++.++.-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999988653
No 411
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.81 E-value=0.14 Score=59.51 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=36.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 134 ATLAGEKTKKVVEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..++|. +..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~--~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQ--EHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSC--HHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECc--hhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 678997 56677776666655 588999999999999999999875
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.80 E-value=0.31 Score=50.89 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=29.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEEC
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 197 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 197 (932)
-.+++|+|++|+|||||++.++...... .-..++|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence 3689999999999999999999886322 12246666543
No 413
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.76 E-value=0.12 Score=54.52 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|.|+|+.|+||||||..+++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999865
No 414
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.75 E-value=0.39 Score=53.07 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=49.6
Q ss_pred eeEEEEEeCCCChHHHHH-HHHHHHHhhccCCCc-EEEEEEECCcc-CHHHHHHHHHHHHhc-------cccccchHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFN-VVIWVTVSQPL-YLIKLQTEIATALKQ-------SLLENEDKVRR 226 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~ 226 (932)
-.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+++.. .+.++.+.+.+.=.. ...++......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 366899999999999995 5777653 234 35677777654 344555555432111 11111111111
Q ss_pred -----HHHHHHHHh-cCCeEEEEEecccc
Q 036714 227 -----AGELLGMLK-AKEKFVLILDDMWE 249 (932)
Q Consensus 227 -----~~~l~~~l~-~~kr~LlVlDdv~~ 249 (932)
...+-+.+. +++.+|+++||+..
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 111112221 57899999999854
No 415
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.72 E-value=0.11 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|+|||||++.+..-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3689999999999999999988654
No 416
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.65 E-value=0.084 Score=55.02 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=20.3
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+..+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999865
No 417
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.65 E-value=0.2 Score=52.82 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.2
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
...+|+|+|.+|+||||++..++....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999998874
No 418
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.57 E-value=0.15 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|.|.|+.|+||||||..+++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5789999999999999999999875
No 419
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.52 E-value=0.1 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
-.+++|+|+.|.|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999876
No 420
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.43 E-value=0.93 Score=51.33 Aligned_cols=51 Identities=10% Similarity=-0.019 Sum_probs=36.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIAT 211 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 211 (932)
-.++.|.|.+|+||||||.+++..... ..-..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccC--CHHHHHHHHHH
Confidence 368899999999999999999988632 2234577776644 35566655543
No 421
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.40 E-value=0.15 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 5678999999999999999998754
No 422
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.38 E-value=0.31 Score=49.41 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCC-C-eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 142 KKVVEEIWEDLMGD-K-VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 142 ~~~~~~l~~~L~~~-~-~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
......+..++... . ...|.++|++|+|||.+|.++++..
T Consensus 87 ~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 87 QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34456677788764 2 4679999999999999999999863
No 423
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.36 E-value=0.36 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=23.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|.|..|+|||||++.++...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999876
No 424
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.22 E-value=0.13 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998764
No 425
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.22 E-value=0.29 Score=51.52 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECC
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 198 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 198 (932)
...++|+|+|-||+||||+|..++...... -..++-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL---GKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 357899999999999999999999988532 22456665543
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.20 E-value=0.27 Score=49.15 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=23.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|+|.|+.|+||||+++.+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 427
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.10 E-value=0.67 Score=51.64 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=36.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccC-HHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLY-LIKLQTEI 209 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 209 (932)
-..++|.|..|+|||+|+.++++.. +-+.++++-+++... +.++..++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4779999999999999999998753 335788888887665 44554443
No 428
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.04 E-value=0.15 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
.+++|+|+.|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 429
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.03 E-value=0.13 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999988754
No 430
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.02 E-value=0.34 Score=51.69 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=33.1
Q ss_pred hcCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 152 LMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 152 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
+.+...+++.+.|.||+||||+|..++...... ..-..+.-|+....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~ 59 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPA 59 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSS
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCC
Confidence 334557899999999999999999999887310 22334566655433
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.98 E-value=0.43 Score=47.74 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=28.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEE
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 194 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 194 (932)
...|.|.|+.|+||||+++.+.+... ..++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence 46899999999999999999999874 2455534443
No 432
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.94 E-value=0.13 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999998643
No 433
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.91 E-value=0.2 Score=53.59 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..+++|+|+.|+||||+++.++....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 47999999999999999999999873
No 434
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.89 E-value=0.47 Score=46.63 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=23.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..|.|.|+.|+||||+++.+.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999874
No 435
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.81 E-value=0.2 Score=51.26 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.5
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999999876
No 436
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.80 E-value=0.14 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|+|+.|.|||||.+.++.-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999988753
No 437
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.77 E-value=0.18 Score=51.52 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.-.+++|+|+.|+|||||++.+....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 35799999999999999999999875
No 438
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.76 E-value=0.31 Score=48.04 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHh
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
.|.+.|.||+||||+|..++....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478899999999999999998874
No 439
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.75 E-value=0.12 Score=50.95 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|+|+.|.|||||++.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 679999999999999999988653
No 440
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.74 E-value=0.17 Score=52.71 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.3
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45799999999999999999999864
No 441
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.74 E-value=0.17 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
-.+++|+|+.|.|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 442
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.72 E-value=0.15 Score=51.12 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|+|+.|.|||||++.++.-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998764
No 443
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.71 E-value=0.14 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++.-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3689999999999999999988653
No 444
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.71 E-value=0.6 Score=51.68 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=50.8
Q ss_pred eeEEEEEeCCCChHHHHH-HHHHHHHhhc---cCCCc-EEEEEEECCcc-CHHHHHHHHHHHHhc-------cccccchH
Q 036714 157 VTKIGVWGMGGIGKTTIM-KEINNRLQKE---TNKFN-VVIWVTVSQPL-YLIKLQTEIATALKQ-------SLLENEDK 223 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~---~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~ 223 (932)
-.-++|+|..|+|||+|| ..+.+..... ..+-+ .++++-+++.. .+.++.+.+.+.=.. ...++...
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 467899999999999994 5777765210 01223 46777777654 344555555432111 11111111
Q ss_pred HHH-----HHHHHHHHh-cCCeEEEEEecccc
Q 036714 224 VRR-----AGELLGMLK-AKEKFVLILDDMWE 249 (932)
Q Consensus 224 ~~~-----~~~l~~~l~-~~kr~LlVlDdv~~ 249 (932)
... ...+-+.+. .++.+|+++||+..
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 111 111112221 57899999999854
No 445
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.70 E-value=0.14 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 446
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.70 E-value=0.15 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998654
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.64 E-value=0.18 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=21.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 448
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.64 E-value=0.15 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998654
No 449
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.63 E-value=0.21 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=22.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 689999999999999999999876
No 450
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.61 E-value=0.4 Score=49.23 Aligned_cols=37 Identities=24% Similarity=0.519 Sum_probs=28.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEEC
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 197 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 197 (932)
++|+|.|-||+||||+|..++..... .-..++-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~---~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA---MGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH---CCCcEEEEcCC
Confidence 57888999999999999999998842 22345666543
No 451
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.60 E-value=0.15 Score=51.66 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|+|+.|.|||||++.++.-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999988754
No 452
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.58 E-value=0.56 Score=60.89 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=53.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhcccc-----ccchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLL-----ENEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 231 (932)
-.++.|.|++|+||||||.+++..... .-..++|++.....+... ++.++.+.. ...+..+ +....
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~-il~~~ 453 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQ-ALEIC 453 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHH-HHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHH-HHHHH
Confidence 479999999999999999999988742 234688888777766432 555654321 1112222 22222
Q ss_pred HHHh-cCCeEEEEEecccc
Q 036714 232 GMLK-AKEKFVLILDDMWE 249 (932)
Q Consensus 232 ~~l~-~~kr~LlVlDdv~~ 249 (932)
+.+. ..+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 2222 34566999999853
No 453
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.50 E-value=0.16 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
+.|.|.|++|+||||||.++....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999999998764
No 454
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.50 E-value=0.21 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
+.|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999875
No 455
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.46 E-value=0.19 Score=48.87 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 456
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.42 E-value=0.16 Score=51.77 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++.-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998653
No 457
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.41 E-value=0.17 Score=55.75 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|.|+|++|+||||+|+.++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.39 E-value=0.18 Score=52.18 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.++.|+|++|+|||||+.+++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999999765
No 459
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.39 E-value=0.2 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.500 Sum_probs=20.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 460
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.33 E-value=0.43 Score=47.19 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCeeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 154 GDKVTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 154 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
......|.|.|+.|+||||+++.+.+...
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34567899999999999999999999874
No 461
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.32 E-value=0.52 Score=60.36 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=53.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc-----cchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE-----NEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 231 (932)
-+++.|.|++|+||||||.+++..... .-..++|++.....+.. .++.++.+... ..+..+ +....
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~-~l~~l 453 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQ-ALEIC 453 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHH-HHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHH-HHHHH
Confidence 479999999999999999999988743 23468899887776653 25556543221 112222 22222
Q ss_pred HHHh-cCCeEEEEEecccc
Q 036714 232 GMLK-AKEKFVLILDDMWE 249 (932)
Q Consensus 232 ~~l~-~~kr~LlVlDdv~~ 249 (932)
+.+. ..+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 2222 34566999999854
No 462
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.30 E-value=0.41 Score=50.76 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=32.5
Q ss_pred cCCCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCc
Q 036714 153 MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 199 (932)
Q Consensus 153 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 199 (932)
.+...+++.+.|.||+||||+|..++.... .....++-|+....
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~ 55 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPA 55 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSS
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCC
Confidence 344568888999999999999999998874 23345666665533
No 463
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.23 E-value=0.17 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++.-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999998753
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.19 E-value=0.24 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
..+|+|.|+.|+||||+++.+....
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999865
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.18 E-value=0.17 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++.-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 466
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.15 E-value=0.17 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|+|+.|.|||||++.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 689999999999999999998754
No 467
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.06 E-value=0.22 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 468
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.97 E-value=0.18 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.+++|+|+.|.|||||++.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999988754
No 469
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.95 E-value=0.18 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999988653
No 470
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.85 E-value=0.18 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999998754
No 471
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.79 E-value=0.23 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998653
No 472
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.75 E-value=0.2 Score=48.11 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998863
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.73 E-value=0.6 Score=59.77 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=57.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHHHHHHHHHHHHhccccc-----cchHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLIKLQTEIATALKQSLLE-----NEDKVRRAGELL 231 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 231 (932)
-++|-|+|+.|+||||||.++....++ .-...+|++.....+..- ++.++.+... .....+.+....
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~---~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 479999999999999999999987632 345688888877777553 6777765432 122233333333
Q ss_pred HHHhcCCeEEEEEeccc
Q 036714 232 GMLKAKEKFVLILDDMW 248 (932)
Q Consensus 232 ~~l~~~kr~LlVlDdv~ 248 (932)
.....+..-+||+|-|.
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 33445667799999874
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.73 E-value=0.65 Score=45.68 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=26.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcE
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV 190 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 190 (932)
...|.|.|+.|+||||+++.+.+... ...+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCc
Confidence 36899999999999999999999873 234554
No 475
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.72 E-value=0.22 Score=53.69 Aligned_cols=27 Identities=22% Similarity=0.008 Sum_probs=23.6
Q ss_pred CCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 155 DKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 155 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345799999999999999999999764
No 476
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.70 E-value=0.4 Score=56.88 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=54.6
Q ss_pred ccccccchHHHHHHHHHHhcC-------------CCeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc
Q 036714 134 ATLAGEKTKKVVEEIWEDLMG-------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 200 (932)
Q Consensus 134 ~~~vGr~~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 200 (932)
..+.|- ++.+++|.+.+.- ...+-|.++|++|+|||.+|+++++... + -++.++.
T Consensus 477 ~diggl--~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~-----~---~f~~v~~-- 544 (806)
T 3cf2_A 477 EDIGGL--EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----A---NFISIKG-- 544 (806)
T ss_dssp TTCCSC--HHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT-----C---EEEECCH--
T ss_pred HHhCCH--HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC-----C---ceEEecc--
Confidence 456665 5555555544321 1245688999999999999999999762 1 1222221
Q ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhcCCeEEEEEecccc
Q 036714 201 YLIKLQTEIATALKQSLLENEDKVRRAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 201 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
.++ + .....+ ....+.+++....+..+.+|++|+++.
T Consensus 545 --~~l----~----s~~vGe--se~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 --PEL----L----TMWFGE--SEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp --HHH----H----TTTCSS--CHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred --chh----h----ccccch--HHHHHHHHHHHHHHcCCceeechhhhH
Confidence 111 1 111111 123455666666566799999999864
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.57 E-value=0.28 Score=49.50 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...|+|.|..|+||||+++.+++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999876
No 478
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.52 E-value=0.87 Score=50.15 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=50.1
Q ss_pred eeEEEEEeCCCChHHHHH-HHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHHHHHHHhc-------cccccchHHH--
Q 036714 157 VTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTEIATALKQ-------SLLENEDKVR-- 225 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 225 (932)
-.-++|.|..|+|||+|| ..+.+.. ..-..++++-+++.. .+.++...+.+.=.. ...++.....
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 467899999999999996 5666642 222246778887764 344555554432111 0111111111
Q ss_pred ------HHHHHHHHHhcCCeEEEEEecccc
Q 036714 226 ------RAGELLGMLKAKEKFVLILDDMWE 249 (932)
Q Consensus 226 ------~~~~l~~~l~~~kr~LlVlDdv~~ 249 (932)
.+.+.++. +++.+||++||+..
T Consensus 238 a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 11222222 58999999999854
No 479
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.47 E-value=0.46 Score=45.70 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999998753
No 480
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.38 E-value=0.16 Score=58.77 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-|.++|++|+|||+||+.+++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999998765
No 481
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.34 E-value=0.77 Score=51.37 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=35.3
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCcc-CHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-YLIKLQTE 208 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~ 208 (932)
+-..++|.|..|+|||+|+.++++.. +-+.++++-+++.. .+.++..+
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred CCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 34789999999999999999998863 33577888777653 34444444
No 482
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.31 E-value=0.25 Score=46.18 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.-.|.|+|.+|+|||||+..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.21 E-value=0.25 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 484
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.19 E-value=0.28 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.++|.|++|+||||+|+.+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 485
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.07 E-value=0.26 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 486
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.02 E-value=0.46 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.7
Q ss_pred CeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 156 KVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 156 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
...+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999999865
No 487
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.91 E-value=0.27 Score=47.27 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 488
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.90 E-value=0.6 Score=47.14 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=29.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEECCccCHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLYLI 203 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 203 (932)
|+|.|-||+||||+|..++..... .-..++-|+.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~---~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS---DYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT---TCSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCcChH
Confidence 667999999999999999998842 22456666655444444
No 489
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.90 E-value=0.49 Score=49.20 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=28.4
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHhhccCCCcEEEEEEEC
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 197 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 197 (932)
.++|+|.|.||+||||+|..++...... . ..+.-|+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G-~rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--G-KKVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--T-CCEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--C-CeEEEEecC
Confidence 3688889999999999999999987432 2 245555543
No 490
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.89 E-value=0.2 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.+..-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4789999999999999999988654
No 491
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.87 E-value=0.23 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
.+++|+|+.|.|||||++.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 492
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.80 E-value=0.21 Score=55.00 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.6
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHHh
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRLQ 182 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 182 (932)
..+|.|+|.+|+||||++..++....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999998874
No 493
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.78 E-value=0.41 Score=50.07 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCeeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 145 VEEIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 145 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
++++.+.+.+ .+++|+|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3455565543 689999999999999999999 54
No 494
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.76 E-value=0.26 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 495
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.70 E-value=0.19 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNR 180 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~ 180 (932)
..+|+|.|+.|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 479999999999999999998764
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.58 E-value=0.31 Score=45.35 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 036714 160 IGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 160 i~I~G~gGiGKTtLa~~v~~~~ 181 (932)
|+|+|.+|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998653
No 497
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=87.54 E-value=1.4 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHH
Q 036714 159 KIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 159 vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
.|+|+|.+|+|||||...+....
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998864
No 498
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.53 E-value=0.38 Score=45.80 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=25.5
Q ss_pred HHHHHHhcC-CCeeEEEEEeCCCChHHHHHHHHHH
Q 036714 146 EEIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINN 179 (932)
Q Consensus 146 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~ 179 (932)
.++.+.+.. .....|+|+|.+|+|||||...+..
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 344444444 4567789999999999999988764
No 499
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.52 E-value=0.3 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHH
Q 036714 158 TKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 158 ~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
--|+|+|.+|+|||||+..+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998753
No 500
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.46 E-value=0.26 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCChHHHHHHHHHHHH
Q 036714 157 VTKIGVWGMGGIGKTTIMKEINNRL 181 (932)
Q Consensus 157 ~~vi~I~G~gGiGKTtLa~~v~~~~ 181 (932)
-.+++|+|+.|.|||||++.++.-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3689999999999999999998754
Done!