BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036715
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V6Y|A Chain A, Crystal Structure Of Chimeric Xylanase Between
Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas
Fimi Cex
Length = 324
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 18/266 (6%)
Query: 27 LGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANK 86
G+AIAS LG+ Y + FN ENE+K ATE ++G+ N++ D++ + N
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 87 LIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD 146
VRGH + W + + P W+++L+G L+ A+ I +M YK + WDV NE D
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNEAFSDD 133
Query: 147 FYE-------QRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLR 199
QR G F+TA +DP A L N+YN+ + + +R
Sbjct: 134 GSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTW---AKTQGVYNMVR 190
Query: 200 ELRRSGVSTDGIGLQGHFTVPNLPL-MRAIIDKMTTLKLPIWLTEVDISSKLSKEK---- 254
+ ++ GV D +G Q H V +P R + + L + + +TE+DI + +
Sbjct: 191 DFKQRGVPIDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDATKLA 250
Query: 255 -QAVYLEQVLREGFSHPSVSGIMLWA 279
QA ++V++ G+ +W
Sbjct: 251 TQAADYKKVVQACMQVTRCQGVTVWG 276
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 112/240 (46%), Gaps = 14/240 (5%)
Query: 27 LGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANK 86
G+AIAS LG+ Y + FN ENE+K ATE ++G+ N++ D++ + N
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 87 LIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD 146
VRGH + W + + P W+++L+G L+ A+ I +M YK + WDV NE D
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNEAFSDD 133
Query: 147 FYE-------QRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLR 199
QR G F+TA +DP A L N+YN+ + + +R
Sbjct: 134 GSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENW---TWAKTQGVYNMVR 190
Query: 200 ELRRSGVSTDGIGLQGHFT--VPNLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAV 257
+ ++ GV D +G Q HF P R + L + + +TE+DI S AV
Sbjct: 191 DFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGASSSTYAAV 250
>pdb|2G3I|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G3J|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|B Chain B, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
Length = 313
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 112/240 (46%), Gaps = 14/240 (5%)
Query: 27 LGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANK 86
G+AIAS LG+ Y + FN ENE+K ATE ++G+ N++ D++ + N
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 87 LIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD 146
VRGH + W + + P W+++L+G L+ A+ I +M YK + WDV NE D
Sbjct: 76 KQVRGHTLAWHSAQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNEAFSDD 133
Query: 147 FYE-------QRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLR 199
QR G F+TA +DP A L N+YN+ + + +R
Sbjct: 134 GSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTW---AKTQGVYNMVR 190
Query: 200 ELRRSGVSTDGIGLQGHFT--VPNLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAV 257
+ ++ GV D +G Q HF P R + L + + +TE+DI S AV
Sbjct: 191 DFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGASSSTYAAV 250
>pdb|1NQ6|A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A
From Streptomyces Halstedii Jm8
Length = 302
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 123/264 (46%), Gaps = 20/264 (7%)
Query: 27 LGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANK 86
G+A+A+ LG Y +F + ENE+KW A E+ + +++ AD+++ ++
Sbjct: 15 FGAAVAANHLGEAAYASTLDAQFGSVTPENEMKWDAVESSRNSFSFSAADRIVSHAQSKG 74
Query: 87 LIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILH-- 144
+ VRGH + W + P WV L L+SA+N+ I +M YK + WDV NE
Sbjct: 75 MKVRGHTLVWHSQL--PGWVSPLAATDLRSAMNNHITQVMTHYKGKIHSWDVVNEAFQDG 132
Query: 145 ------FDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRL 198
++ +LG F+TA D A L N+YN N+ ++ +
Sbjct: 133 GSGARRSSPFQDKLGNGFIEEAFRTARTVDADAKLCYNDYNT----DGQNAKSNAVYEMV 188
Query: 199 RELRRSGVSTDGIGLQGHFTVPNLPL---MRAIIDKMTTLKLPIWLTEVDISSKLSKEKQ 255
++ ++ GV D +G Q HF N P+ +A + + L + + +TE+DI S Q
Sbjct: 189 KDFKQRGVPIDCVGFQSHFN-SNSPVPSDFQANLQRFADLGVDVQITELDIEG--SGSAQ 245
Query: 256 AVYLEQVLREGFSHPSVSGIMLWA 279
A +V+ + +GI +W
Sbjct: 246 AANYTKVVNACLAVTRCTGITVWG 269
>pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure
At 1.2 Angstrom Resolution
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1OD8|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine Lactam
pdb|1V0K|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Deoxynojirimycin At Ph 5.8
pdb|1V0L|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-isofagomine At Ph 5.8
pdb|1V0M|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-deoxynojirimycin At Ph 7.5
pdb|1V0N|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine At Ph 7.5
Length = 313
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 16/230 (6%)
Query: 27 LGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANK 86
G+AIAS L + Y + FN ENE+K ATE ++G+ N++ AD++ + N
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 87 LIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEIL--- 143
VRGH + W + + P W+++L+G L+ A+ I +M YK + + WDV NE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNEAFADG 133
Query: 144 ----HFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVE-TCSDVNSMVDSYISRL 198
D QR G F+TA +DP A L N+YNV T + +M + +
Sbjct: 134 SSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWAKTQAMYN----MV 189
Query: 199 RELRRSGVSTDGIGLQGHFT--VPNLPLMRAIIDKMTTLKLPIWLTEVDI 246
R+ ++ GV D +G Q HF P R + L + + +TE+DI
Sbjct: 190 RDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDI 239
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 16/230 (6%)
Query: 27 LGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANK 86
G+AIAS L + Y + FN ENE+K ATE ++G+ N++ AD++ + N
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 87 LIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEIL--- 143
VRGH + W + + P W+++L+G L+ A+ I +M YK + + WDV NE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNEAFADG 133
Query: 144 ----HFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVE-TCSDVNSMVDSYISRL 198
D QR G F+TA +DP A L N+YNV T + +M + +
Sbjct: 134 SSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWAKTQAMYN----MV 189
Query: 199 RELRRSGVSTDGIGLQGHFT--VPNLPLMRAIIDKMTTLKLPIWLTEVDI 246
R+ ++ GV D +G Q HF P R + L + + +TE+DI
Sbjct: 190 RDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDI 239
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 14/240 (5%)
Query: 27 LGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANK 86
G+AIAS LG+ Y + FN ENE+K ATE ++G+ N++ D++ + N
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 87 LIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD 146
VRGH + W + + P W+++L+G L+ A+ I +M YK + WDV + D
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVSHAFSDD 133
Query: 147 FYE-------QRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLR 199
QR G F+TA +DP A L N+YN+ + + +R
Sbjct: 134 GSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENW---TWAKTQGVYNMVR 190
Query: 200 ELRRSGVSTDGIGLQGHFT--VPNLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAV 257
+ ++ GV D +G Q HF P R + L + + +TE+DI S AV
Sbjct: 191 DFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGASSSTYAAV 250
>pdb|1XAS|A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The
Streptomyces Lividans Xylanase A, A Member Of The F
Family Of Beta-1,4-D-Glycanses
Length = 299
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 16/230 (6%)
Query: 27 LGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANK 86
G+AIAS L + Y + FN ENE+K ATE ++G+ N++ AD++ + N
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 87 LIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEIL--- 143
VRGH + W + + P W+++L+G L+ A+ I +M YK + + WDV NE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGRPLRQAMIDHINGVMAHYKGKIVQWDVVNEAFADG 133
Query: 144 ----HFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVE-TCSDVNSMVDSYISRL 198
D QR G F+TA +DP A L N+YNV T + +M + +
Sbjct: 134 SSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWAKTQAMYN----MV 189
Query: 199 RELRRSGVSTDGIGLQGHFT--VPNLPLMRAIIDKMTTLKLPIWLTEVDI 246
R+ ++ GV D +G Q HF P R + L + + +TE+DI
Sbjct: 190 RDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDI 239
>pdb|1TUX|A Chain A, High Resolution Crystal Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 301
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 21/272 (7%)
Query: 49 FNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN 108
F EN +KW ATE QG N+ AD ++ + + N ++RGH + W + P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQL--PSWVVS 97
Query: 109 LTGFQ-LQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD------FYEQRLGPKAALHFF 161
+T L + + + I ++M +Y + WDV NE + D + +G F
Sbjct: 98 ITDKNTLTNVMKNHITTIMTRYIGKIRAWDVVNEAFNEDGSLRQTVFNNVIGEDYIPIAF 157
Query: 162 QTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPN 221
+TA +DP A L++N+YN+ S + + R+++ R +GV DGIG Q H +
Sbjct: 158 RTARAADPNAKLYINDYNLDSASKPKTSAI---VKRVKKWRAAGVPIDGIGSQTHLSAGQ 214
Query: 222 LPLMRAIIDKMTTLKLP-IWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAA 280
+ A + + + P + +TE+DI+ S + Y++ V+ S GI +W
Sbjct: 215 GASIDAALPNLASAGTPEVAITELDIAGATSTD----YVD-VVNACLDVDSCIGITVWGV 269
Query: 281 LHPN---GCYQMCLTDNNLQNLPAGDVVDKLL 309
P+ L D N PA + + +LL
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQLL 301
>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
Length = 328
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 22/249 (8%)
Query: 47 KRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWV 106
+ FN EN++KW E+ + N+T A++ +EF N +IV GH + W N P W+
Sbjct: 40 REFNILTPENQMKWDTIHPERDRYNFTPAEKHVEFAEENDMIVHGHTLVWHNQL--PGWI 97
Query: 107 --RNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEIL------HFDFYEQRLGPKAAL 158
R T +L + + I+++++ +K WDV NE + + + +GP+
Sbjct: 98 TGREWTKEELLNVLEDHIKTVVSHFKGRVKIWDVVNEAVSDSGTYRESVWYKTIGPEYIE 157
Query: 159 HFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGH-- 216
F+ A ++DP A L N+Y++ E +N+ + + ++EL+ GV DGIG Q H
Sbjct: 158 KAFRWAKEADPDAILIYNDYSIEE----INAKSNFVYNMIKELKEKGVPVDGIGFQMHID 213
Query: 217 FTVPNLPLMRAIIDKMTTLKLPIWLTEVDISSKLSK------EKQAVYLEQVLREGFSHP 270
+ N R +++ L L I++TE+D+ LS +KQA ++ +P
Sbjct: 214 YRGLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSGSEEYYLKKQAEVCAKIFDICLDNP 273
Query: 271 SVSGIMLWA 279
+V I W
Sbjct: 274 AVKAIQFWG 282
>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
Length = 341
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 22/249 (8%)
Query: 47 KRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWV 106
+ FN EN++KW E+ + N+T A++ +EF N +IV GH + W N P W+
Sbjct: 56 REFNILTPENQMKWDTIHPERDRYNFTPAEKHVEFAEENNMIVHGHTLVWHNQL--PGWI 113
Query: 107 --RNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEIL------HFDFYEQRLGPKAAL 158
R T +L + + I+++++ +K WDV NE + + + +GP+
Sbjct: 114 TGREWTKEELLNVLEDHIKTVVSHFKGRVKIWDVVNEAVSDSGTYRESVWYKTIGPEYIE 173
Query: 159 HFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGH-- 216
F+ ++DP A L N+Y++ E +N+ + + ++EL+ GV DGIG Q H
Sbjct: 174 KAFRWTKEADPDAILIYNDYSIEE----INAKSNFVYNMIKELKEKGVPVDGIGFQMHID 229
Query: 217 FTVPNLPLMRAIIDKMTTLKLPIWLTEVDISSKLSK------EKQAVYLEQVLREGFSHP 270
+ N R +++ L L I++TE+D+ LS +KQA ++ +P
Sbjct: 230 YRGLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSGSEDYYLKKQAEICAKIFDICLDNP 289
Query: 271 SVSGIMLWA 279
+V I W
Sbjct: 290 AVKAIQFWG 298
>pdb|1I1W|A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
pdb|1I1X|A Chain A, 1.11 A Atomic Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 303
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 21/274 (7%)
Query: 49 FNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN 108
F EN +KW ATE QG N+ AD ++ + + N ++RGH + W + P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQL--PSWVSS 97
Query: 109 LTGFQ-LQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD------FYEQRLGPKAALHFF 161
+T L + + + I +LM +YK + WDV NE + D + +G F
Sbjct: 98 ITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAF 157
Query: 162 QTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPN 221
QTA +DP A L++N+YN+ S + ++R+++ R +GV DGIG Q H +
Sbjct: 158 QTARAADPNAKLYINDYNL---DSASYPKTQAIVNRVKKWRAAGVPIDGIGSQTHLSAGQ 214
Query: 222 LPLMRAIIDKMTTLKLP-IWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAA 280
+ + + + P + +TE+D++ S + Y+ V+ + S GI +W
Sbjct: 215 GASVLQALPLLASAGTPEVAITELDVAGASSTD----YVN-VVNACLNVSSCVGITVWGV 269
Query: 281 LHPN---GCYQMCLTDNNLQNLPAGDVVDKLLKE 311
P+ L D N PA + + + L++
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQNLQQ 303
>pdb|1XYZ|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
pdb|1XYZ|B Chain B, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 347
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 124/258 (48%), Gaps = 25/258 (9%)
Query: 41 YQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPK 100
Y + F+ V ENE+K+ A + Q +++ DQ++ F N + +RGH + W N
Sbjct: 55 YNSILQREFSMVVCENEMKFDALQPRQNVFDFSKGDQLLAFAERNGMQMRGHTLIWHN-- 112
Query: 101 YNPTWVR--NLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEI-------LHFDFYEQR 151
NP+W+ N L + + + I ++M YK + + WDV+NE L +
Sbjct: 113 QNPSWLTNGNWNRDSLLAVMKNHITTVMTHYKGKIVEWDVANECMDDSGNGLRSSIWRNV 172
Query: 152 LGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGI 211
+G + F+ A ++DP A LF N+YN+ D+ ++ + ++ ++ GV DG+
Sbjct: 173 IGQDYLDYAFRYAREADPDALLFYNDYNI----EDLGPKSNAVFNMIKSMKERGVPIDGV 228
Query: 212 GLQGHFTVPNLPLMRAIID----KMTTLKLPIWLTEVDISSKLSK------EKQAVYLEQ 261
G Q HF P A ID + + + + TE+DI S+ + QA ++
Sbjct: 229 GFQCHFINGMSPEYLASIDQNIKRYAEIGVIVSFTEIDIRIPQSENPATAFQVQANNYKE 288
Query: 262 VLREGFSHPSVSGIMLWA 279
+++ ++P+ + ++W
Sbjct: 289 LMKICLANPNCNTFVMWG 306
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 21/274 (7%)
Query: 49 FNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN 108
F EN +KW ATE QG N+ AD ++ + + N ++RGH + W + P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQL--PSWVSS 97
Query: 109 LTGFQ-LQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD------FYEQRLGPKAALHFF 161
+T L + + + I +LM +YK + WDV NE + D + +G F
Sbjct: 98 ITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAF 157
Query: 162 QTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPN 221
QTA +DP A L++N+YN+ S + ++R+++ R +GV DGIG Q H +
Sbjct: 158 QTARAADPNAKLYINDYNL---DSASYPKTQAIVNRVKKWRAAGVPIDGIGSQTHLSAGQ 214
Query: 222 LPLMRAIIDKMTTLKLP-IWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAA 280
+ + + + P + +TE+D++ + Y+ V+ + S GI +W
Sbjct: 215 GAGVLQALPLLASAGTPEVAITELDVAGASPTD----YVN-VVNACLNVSSCVGITVWGV 269
Query: 281 LHPN---GCYQMCLTDNNLQNLPAGDVVDKLLKE 311
P+ L D N PA + + + L++
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQNLQQ 303
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 21/274 (7%)
Query: 49 FNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN 108
F EN +KW ATE QG N+ AD ++ + + N ++RGH + W + P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQL--PSWVSS 97
Query: 109 LTGFQ-LQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD------FYEQRLGPKAALHFF 161
+T L + + + I +LM +YK + WDV NE + D + +G F
Sbjct: 98 ITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAF 157
Query: 162 QTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPN 221
QTA +DP A L++N+YN+ S + ++R+++ R +GV DGIG Q H +
Sbjct: 158 QTARAADPNAKLYINDYNL---DSASYPKTQAIVNRVKQWRAAGVPIDGIGSQTHLSAGQ 214
Query: 222 LPLMRAIIDKMTTLKLP-IWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAA 280
+ + + + P + +TE+D++ + Y+ V+ + S GI +W
Sbjct: 215 GAGVLQALPLLASAGTPEVAITELDVAGASPTD----YVN-VVNACLNVQSCVGITVWGV 269
Query: 281 LHPN---GCYQMCLTDNNLQNLPAGDVVDKLLKE 311
P+ L D N PA + + + L++
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQDLQQ 303
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 21/274 (7%)
Query: 49 FNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN 108
F EN +KW ATE QG N+ AD ++ + + N ++RGH + W + P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQL--PSWVSS 97
Query: 109 LTGFQ-LQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD------FYEQRLGPKAALHFF 161
+T L + + + I +LM +YK + WDV NE + D + +G F
Sbjct: 98 ITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAF 157
Query: 162 QTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPN 221
QTA +DP A L++N+YN+ S + ++R+++ R +GV DGIG Q H +
Sbjct: 158 QTARAADPNAKLYINDYNL---DSASYPKTQAIVNRVKQWRAAGVPIDGIGSQTHLSAGQ 214
Query: 222 LPLMRAIIDKMTTLKLP-IWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAA 280
+ + + + P + +TE+D++ + Y+ V+ + S GI +W
Sbjct: 215 GAGVLQALPLLASAGTPEVAITELDVAGASPTD----YVN-VVNACLNVQSCVGITVWGV 269
Query: 281 LHPN---GCYQMCLTDNNLQNLPAGDVVDKLLKE 311
P+ L D N PA + + + L++
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQDLQQ 303
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 22/240 (9%)
Query: 55 ENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQ- 113
EN +KW ATE +G+ ++ +D ++ F ++N ++RGH + W + P WV ++T
Sbjct: 47 ENSMKWDATEPNRGQFTFSGSDYLVNFAQSNGKLIRGHTLVWHSQL--PGWVSSITDKNT 104
Query: 114 LQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD-------FYEQRLGPKAALHFFQTAHQ 166
L S + + I ++M +YK + WDV NEI + D FY +G F+TA
Sbjct: 105 LISVLKNHITTVMTRYKGKIYAWDVLNEIFNEDGSLRNSVFY-NVIGEDYVRIAFETARS 163
Query: 167 SDPLATLFMNEYNVVETC-SDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLM 225
DP A L++N+YN+ S VN MV S +++ +G+ DGIG Q H +
Sbjct: 164 VDPNAKLYINDYNLDSAGYSKVNGMV----SHVKKWLAAGIPIDGIGSQTHLGAGAGSAV 219
Query: 226 RAIIDKMTTLKLP-IWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAALHPN 284
++ + + I +TE+DI+ S + Y+ V+ + GI +W P+
Sbjct: 220 AGALNALASAGTKEIAITELDIAGASSTD----YV-NVVNACLNQAKCVGITVWGVADPD 274
>pdb|3CUF|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellobiose-Like Isofagomine
pdb|3CUG|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotetraose-Like Isofagomine
pdb|3CUH|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotriose-Like Isofagomine
pdb|3CUI|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylotetraose
pdb|3CUJ|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylopentaose
Length = 315
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 21/271 (7%)
Query: 21 VSKDFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMME 80
+DF G A+ L Y+ FN V EN +KW ATE Q ++ D++
Sbjct: 11 AGRDF--GFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVAS 68
Query: 81 FVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSN 140
+ + GH + W + P W +NL G +SA+ + + + + ++ + WDV N
Sbjct: 69 YAADTGKELYGHTLVWHSQL--PDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVN 126
Query: 141 EIL-------HFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDS 193
E ++Q+LG F+ A +DP A L +N+YNV +N+ +S
Sbjct: 127 EAFADGGGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNV----EGINAKSNS 182
Query: 194 YISRLRELRRSGVSTDGIGLQGHFTVPNLPL-MRAIIDKMTTLKLPIWLTEVDISSKLSK 252
+++ + GV D +G Q H V +P R + + L + + +TE+DI +
Sbjct: 183 LYDLVKDFKARGVPLDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPS 242
Query: 253 EK-----QAVYLEQVLREGFSHPSVSGIMLW 278
+ QA ++V++ G+ +W
Sbjct: 243 DATKLATQAADYKKVVQACMQVTRCQGVTVW 273
>pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1EXP|A Chain A, Beta-1,4-Glycanase Cex-Cd
pdb|2EXO|A Chain A, Crystal Structure Of The Catalytic Domain Of The Beta-1,4-
Glycanase Cex From Cellulomonas Fimi
pdb|2XYL|A Chain A, Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy- 2-Fluoro-Xylobiose
Length = 312
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 21/271 (7%)
Query: 21 VSKDFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMME 80
+DF G A+ L Y+ FN V EN +KW ATE Q ++ D++
Sbjct: 11 AGRDF--GFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVAS 68
Query: 81 FVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSN 140
+ + GH + W + P W +NL G +SA+ + + + + ++ + WDV N
Sbjct: 69 YAADTGKELYGHTLVWHSQL--PDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVN 126
Query: 141 EIL-------HFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDS 193
E ++Q+LG F+ A +DP A L +N+YNV +N+ +S
Sbjct: 127 EAFADGGGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNV----EGINAKSNS 182
Query: 194 YISRLRELRRSGVSTDGIGLQGHFTVPNLPL-MRAIIDKMTTLKLPIWLTEVDISSKLSK 252
+++ + GV D +G Q H V +P R + + L + + +TE+DI +
Sbjct: 183 LYDLVKDFKARGVPLDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPS 242
Query: 253 EK-----QAVYLEQVLREGFSHPSVSGIMLW 278
+ QA ++V++ G+ +W
Sbjct: 243 DATKLATQAADYKKVVQACMQVTRCQGVTVW 273
>pdb|1TA3|B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
Length = 303
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 22/264 (8%)
Query: 27 LGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANK 86
G+ +L N + +F EN +KW A E QG ++ AD ++++ +
Sbjct: 17 FGTCSDQALLQNSQNEAIVASQFGVITPENSMKWDALEPSQGNFGWSGADYLVDYATQHN 76
Query: 87 LIVRGHNIFWENPKYNPTWVRNL-TGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHF 145
VRGH + W + P+WV ++ L+S + + I ++ +YK + +HWDV NEI +
Sbjct: 77 KKVRGHTLVWHSQL--PSWVSSIGDANTLRSVMTNHINEVVGRYKGKIMHWDVVNEIFNE 134
Query: 146 D-------FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRL 198
D FY LG F+TA +DP A L++N+YN+ + SY+
Sbjct: 135 DGTFRNSVFY-NLLGEDFVRIAFETARAADPDAKLYINDYNLDSASYAKTQAMASYV--- 190
Query: 199 RELRRSGVSTDGIGLQGHFTVPNLPLMR---AIIDKMTTLKLPIWLTEVDISSKLSKEKQ 255
++ GV DGIG Q H++ + A+ T + +TE+DI+ S +
Sbjct: 191 KKWLAEGVPIDGIGSQAHYSSSHWSSTEAAGALSSLANTGVSEVAITELDIAGAASSD-- 248
Query: 256 AVYLEQVLREGFSHPSVSGIMLWA 279
YL +L + GI +W
Sbjct: 249 --YL-NLLNACLNEQKCVGITVWG 269
>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 25/242 (10%)
Query: 22 SKDFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEF 81
+ DF +G+A+ + ++ + N+ EN +K+ + E+GK + AD++++F
Sbjct: 13 ANDFRIGAAVNPVTIEM--QKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDF 70
Query: 82 VRANKLIVRGHNIFWENPKYNPTWVRN------LTGFQLQSAVNSRIQSLMNKYKEEFIH 135
++++ VRGH + W N P WV ++ L + I +++ +YK +
Sbjct: 71 ACSHRMAVRGHTLVWHN--QTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYC 128
Query: 136 WDV--------SNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDV 187
WDV NE+L + Q +G F A+++DP A LF N+YN C
Sbjct: 129 WDVINEAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN---EC--F 183
Query: 188 NSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLKLPIWLTEVD 245
+ + ++ LR G+ GIG+Q H+ T P+L +RA I++ +L + + +TE+D
Sbjct: 184 PEKREKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITELD 243
Query: 246 IS 247
+S
Sbjct: 244 VS 245
>pdb|2HIS|A Chain A, Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTANT
E127aH205N WITH COVALENT CELLOBIOSE
Length = 312
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 118/271 (43%), Gaps = 21/271 (7%)
Query: 21 VSKDFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMME 80
+DF G A+ L Y+ FN V EN +KW ATE Q ++ D++
Sbjct: 11 AGRDF--GFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVAS 68
Query: 81 FVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSN 140
+ + GH + W + P W +NL G +SA+ + + + + ++ + WDV N
Sbjct: 69 YAADTGKELYGHTLVWHSQL--PDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVN 126
Query: 141 EIL-------HFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDS 193
++Q+LG F+ A +DP A L +N+YNV +N+ +S
Sbjct: 127 AAFADGGGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNV----EGINAKSNS 182
Query: 194 YISRLRELRRSGVSTDGIGLQGHFTVPNLPL-MRAIIDKMTTLKLPIWLTEVDISSKLSK 252
+++ + GV D +G Q + V +P R + + L + + +TE+DI +
Sbjct: 183 LYDLVKDFKARGVPLDCVGFQSNLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPS 242
Query: 253 EK-----QAVYLEQVLREGFSHPSVSGIMLW 278
+ QA ++V++ G+ +W
Sbjct: 243 DATKLATQAADYKKVVQACMQVTRCQGVTVW 273
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 119/239 (49%), Gaps = 25/239 (10%)
Query: 25 FPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRA 84
F +G+A+ + +L ++ K +N+ EN++K+ + + + AD++++F A
Sbjct: 15 FKIGAAVHTRMLQT--EGEFIAKHYNSVTAENQMKFEEVHPREHEYTFEAADEIVDFAVA 72
Query: 85 NKLIVRGHNIFWENPKYNPTWV-RNLTG-----FQLQSAVNSRIQSLMNKYKEEFIHWDV 138
+ VRGH + W N P W+ + +G + S + I +++ +YK++ WDV
Sbjct: 73 RGIGVRGHTLVWHNQ--TPAWMFEDASGGTASREMMLSRLKQHIDTVVGRYKDQIYAWDV 130
Query: 139 SNE--------ILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSM 190
NE I+ + + LG + F AH++DP A LF N+YN +
Sbjct: 131 VNEAIEDKTDLIMRDTKWLRLLGEDYLVQAFNMAHEADPNALLFYNDYNETDPVKR---- 186
Query: 191 VDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKMTTLKLPIWLTEVDIS 247
+ + +R L G GIG+QGH+ + P++ +R I++ +L + + +TE+D+S
Sbjct: 187 -EKIYNLVRSLLDQGAPVHGIGMQGHWNIHGPSMDEIRQAIERYASLDVQLHVTELDLS 244
>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 25/242 (10%)
Query: 22 SKDFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEF 81
+ DF +G+A+ + ++ + N+ EN +K+ + E+GK + AD++++F
Sbjct: 13 ANDFRIGAAVNPVTIEM--QKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDF 70
Query: 82 VRANKLIVRGHNIFWENPKYNPTWVRN------LTGFQLQSAVNSRIQSLMNKYKEEFIH 135
++++ VRGH + W N P WV ++ L + I +++ +YK +
Sbjct: 71 ACSHRMAVRGHTLVWHN--QTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYC 128
Query: 136 WDVSN--------EILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDV 187
WDV N E+L + Q +G F A+++DP A LF N+YN C
Sbjct: 129 WDVINEAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN---EC--F 183
Query: 188 NSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLKLPIWLTEVD 245
+ + ++ LR G+ GIG+Q H+ T P+L +RA I++ +L + + +TE+D
Sbjct: 184 PEKREKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITELD 243
Query: 246 IS 247
+S
Sbjct: 244 VS 245
>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
Hg-1
Length = 317
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 128/276 (46%), Gaps = 24/276 (8%)
Query: 56 NELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQ-L 114
N +KW ATE QG N+ AD ++ + + N ++RGH + Y P+WV ++T L
Sbjct: 48 NSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVGH--FYLPSWVSSITDKNTL 105
Query: 115 QSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD------FYEQRLGPKAALHFFQTAHQSD 168
+ + + I +LM +YK + WDV NE + D + +G FQTA +D
Sbjct: 106 TNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAAD 165
Query: 169 PLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAI 228
P A L++N+YN+ S + ++R+++ R +GV DGIG Q H + +
Sbjct: 166 PNAKLYINDYNL---DSASYPKTQAIVNRVKQWRAAGVPIDGIGSQTHLSAGQGAGVLQA 222
Query: 229 IDKMTTLKLP-IWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAALHPN--- 284
+ + + P + +TE++++ + Y+ V+ + S GI + P+
Sbjct: 223 LPLLASAGTPEVAITELNVAGASPTD----YVN-VVNACLNVQSCVGITVAGVADPDSWR 277
Query: 285 GCYQMCLTDNNLQNLPAGDVVDKLLKECQTGEVTGH 320
L D N PA + ++++ Q G + G
Sbjct: 278 ASTTPLLFDGNFNPKPA---YNAIVQDLQQGSIEGR 310
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 28/248 (11%)
Query: 24 DFPLGSAIAST------ILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQ 77
DFP+G A+++T +L N Q K FN N +K + +G N+T AD
Sbjct: 174 DFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADA 233
Query: 78 MMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGF--QLQSAVNSRIQSLMNKY--KEEF 133
+++ N + V GH + W + P +++N G +A+++ I ++++ Y K
Sbjct: 234 FVDWATENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNL 293
Query: 134 IHWDVSNEILHFD-----------FYEQRLGPKAALH-FFQTAHQSDPLATLFMNEYNVV 181
+ WDV NE + + FY + + FQTA +DP L+ N+YN+
Sbjct: 294 VSWDVVNEAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAADPAVILYYNDYNIE 353
Query: 182 ETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKMTTLKLPI 239
+ + MVD +++ + + DG+G Q H + P++ + A + K+ L L +
Sbjct: 354 QNNAKTTKMVD----MVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMKKVVDLGLLV 409
Query: 240 WLTEVDIS 247
+TE+D++
Sbjct: 410 KITELDVA 417
>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 25/242 (10%)
Query: 22 SKDFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEF 81
+ DF +G+A+ + ++ + N+ EN +K+ + E+GK + AD++++F
Sbjct: 13 ANDFRIGAAVNPVTIEM--QKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDF 70
Query: 82 VRANKLIVRGHNIFWENPKYNPTWVRN------LTGFQLQSAVNSRIQSLMNKYKEEFIH 135
++++ VRGH + W N P WV ++ L + I +++ +YK +
Sbjct: 71 ACSHRMAVRGHTLVWHN--QTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYC 128
Query: 136 WDV--------SNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDV 187
WDV NE+L + Q +G F A+++DP A LF N+YN C
Sbjct: 129 WDVINEAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN---EC--F 183
Query: 188 NSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLKLPIWLTEVD 245
+ + ++ LR G+ GIG+Q H+ T P+L +RA I++ +L + + +T +D
Sbjct: 184 PEKREKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITALD 243
Query: 246 IS 247
+S
Sbjct: 244 VS 245
>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 25/242 (10%)
Query: 22 SKDFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEF 81
+ DF +G+A+ + ++ + N+ EN +K+ + E+GK + AD++++F
Sbjct: 13 ANDFRIGAAVNPVTIEM--QKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDF 70
Query: 82 VRANKLIVRGHNIFWENPKYNPTWVRN------LTGFQLQSAVNSRIQSLMNKYKEEFIH 135
++++ VRGH + W N P WV ++ L + I +++ +YK +
Sbjct: 71 ACSHRMAVRGHTLVWHN--QTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYC 128
Query: 136 WDVSN--------EILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDV 187
WDV N E+L + Q +G F A+++DP A LF N+YN C
Sbjct: 129 WDVINEAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN---EC--F 183
Query: 188 NSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLKLPIWLTEVD 245
+ + ++ LR G+ GIG+Q H+ T P+L +RA I++ +L + + +T +D
Sbjct: 184 PEKREKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITALD 243
Query: 246 IS 247
+S
Sbjct: 244 VS 245
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 28/248 (11%)
Query: 24 DFPLGSAIAST------ILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQ 77
DFP+G A+++T +L N Q K FN N +K + +G N+T AD
Sbjct: 174 DFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADA 233
Query: 78 MMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGF--QLQSAVNSRIQSLMNKY--KEEF 133
+++ N + V GH + W + P +++N G +A+++ I ++++ Y K
Sbjct: 234 FVDWATENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNL 293
Query: 134 IHWDVSNEILHFD-----------FYEQRLGPKAALH-FFQTAHQSDPLATLFMNEYNVV 181
+ WDV N + + FY + + FQTA +DP L+ N+YN+
Sbjct: 294 VSWDVVNAAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAADPAVILYYNDYNIE 353
Query: 182 ETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKMTTLKLPI 239
+ + MVD +++ + + DG+G Q H + P++ + A + K+ L L +
Sbjct: 354 QNNAKTTKMVD----MVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMKKVVDLGLLV 409
Query: 240 WLTEVDIS 247
+TE+D++
Sbjct: 410 KITELDVA 417
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Query: 55 ENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQ- 113
EN +KW ATE QG N+ AD ++ + + N ++ G + W + P+WV ++T
Sbjct: 46 ENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIGGGMLVWHSQL--PSWVSSITDKNT 103
Query: 114 LQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD------FYEQRLGPKAALHFFQTAHQS 167
L + + + I +LM +YK + WDV E + D + +G FQTA +
Sbjct: 104 LTNVMKNHITTLMTRYKGKIRAWDVVGEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAA 163
Query: 168 DPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV 219
DP A L++ +YN+ S + ++R+++ R +GV DGIG Q H +
Sbjct: 164 DPNAKLYIMDYNL---DSASYPKTQAIVNRVKQWRAAGVPIDGIGSQTHLSA 212
>pdb|3MMD|A Chain A, Crystal Structure Of The W241a Mutant Of Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6) Complexed With
Hydrolyzed Xylopentaose
Length = 379
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 121/252 (48%), Gaps = 37/252 (14%)
Query: 24 DFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVR 83
+F +G+A+ L N + + FN+ V EN +K + + E+GK N+ AD++++F +
Sbjct: 27 EFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAK 86
Query: 84 ANKLIVRGHNIFWENPKYNPTWV-----------------RNLTGFQLQSAVNSRIQSLM 126
AN + +R H + W + P W R L + + I++++
Sbjct: 87 ANGMDIRFHTLVWHSQV--PQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKTIV 144
Query: 127 NKYKEEFIHWDVSNEILHFDFYEQRLGP---KAALHFFQTAHQS------DPLATLFMNE 177
+YK++ +WDV NE++ D + R P A + + + A Q+ D + L+MN+
Sbjct: 145 ERYKDDIKYWDVVNEVVGDDG-KLRNSPWYQIAGIDYIKVAFQAARKYGGDNI-KLYMND 202
Query: 178 YNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKMTTL 235
YN ++V + + +++L+ GV DGIG Q H + P+ + I+ L
Sbjct: 203 YN-----TEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQIGAPSEAEIEKTINMFAAL 257
Query: 236 KLPIWLTEVDIS 247
L +TE+D+S
Sbjct: 258 GLDNQITELDVS 269
>pdb|3U7B|A Chain A, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|B Chain B, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|C Chain C, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|D Chain D, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|E Chain E, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
Length = 327
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 36/225 (16%)
Query: 55 ENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN--LTGF 112
EN +KW A + +G+ N+ ADQ + +R H + W + P+WV N
Sbjct: 45 ENAMKWEAIQPNRGQFNWGPADQHAAAATSRGYELRCHTLVWHSQL--PSWVANGNWNNQ 102
Query: 113 QLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD------FYEQRLGPKAALHFFQTAHQ 166
LQ+ + I ++M +Y+ + HWDV NE L+ D + + +G F+ A
Sbjct: 103 TLQAVMRDHINAVMGRYRGKCTHWDVVNEALNEDGTYRDSVFLRVIGEAYIPIAFRMALA 162
Query: 167 SDPLATLFMNEYNV------VETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFT-- 218
+DP L+ N+YN+ E + +V SY G+ DGIGLQ H T
Sbjct: 163 ADPTTKLYYNDYNLEYGNAKTEGAKRIARLVKSY----------GLRIDGIGLQAHMTSE 212
Query: 219 --------VPNLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQ 255
P+ + +++ + L + + TE+DI +Q
Sbjct: 213 STPTQNTPTPSRAKLASVLQGLADLGVDVAYTELDIRMNTPATQQ 257
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
pdb|1R85|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6): The Wt Enzyme
(Monoclinic Form) At 1.45a Resolution
pdb|1R87|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The Complex Of The Wt Enzyme With Xylopentaose At
1.67a Resolution
Length = 379
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 121/252 (48%), Gaps = 37/252 (14%)
Query: 24 DFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVR 83
+F +G+A+ L N + + FN+ V EN +K + + E+GK N+ AD++++F +
Sbjct: 27 EFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAK 86
Query: 84 ANKLIVRGHNIFWENPKYNPTWV-----------------RNLTGFQLQSAVNSRIQSLM 126
AN + +R H + W + P W R L + + I++++
Sbjct: 87 ANGMDIRFHTLVWHSQV--PQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKTIV 144
Query: 127 NKYKEEFIHWDVSNEILHFDFYEQRLGP---KAALHFFQTAHQS------DPLATLFMNE 177
+YK++ +WDV NE++ D + R P A + + + A Q+ D + L+MN+
Sbjct: 145 ERYKDDIKYWDVVNEVVGDDG-KLRNSPWYQIAGIDYIKVAFQAARKYGGDNI-KLYMND 202
Query: 178 YNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKMTTL 235
YN ++V + + +++L+ GV DGIG Q H + P+ + I+ L
Sbjct: 203 YN-----TEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINMFAAL 257
Query: 236 KLPIWLTEVDIS 247
L +TE+D+S
Sbjct: 258 GLDNQITELDVS 269
>pdb|2CNC|A Chain A, Family 10 Xylanase
Length = 386
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 22/246 (8%)
Query: 18 IKQVSKD-FPLGSAIASTILGNLPYQ--KWFVKRFNAAVFENELKWYATEAEQGKVNYTV 74
+K KD F +G+A+ +TI + K FN+ EN +KW QG+ N+
Sbjct: 36 LKSAYKDNFLIGAALNATIASGADERLNTLIAKEFNSITPENCMKWGVLRDAQGQWNWKD 95
Query: 75 ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTG-----FQLQSAVNSRIQSLMNKY 129
AD + F + L + GH + W + ++ + +N G LQ + I +L +Y
Sbjct: 96 ADAFVAFGTKHNLHMVGHTLVWHSQIHDEVF-KNADGSYISKAALQKKMEEHITTLAGRY 154
Query: 130 KEEFIHWDVSNEILHFDF------YEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVET 183
K + WDV NE + D + + +G + F A++ DP A L N+YN+ T
Sbjct: 155 KGKLAAWDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLANEVDPKAHLMYNDYNIERT 214
Query: 184 CSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPL--MRAIIDKMTTLKLPIWL 241
++ + + L++ G+ G+G+QGH + P+ + I L L +
Sbjct: 215 GKR-----EATVEMIERLQKRGMPIHGLGIQGHLGIDTPPIAEIEKSIIAFAKLGLRVHF 269
Query: 242 TEVDIS 247
T +D+
Sbjct: 270 TSLDVD 275
>pdb|1UQY|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Xylopentaose
pdb|1UQZ|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With 4-O-Methyl Glucuronic Acid
pdb|1UR1|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha-1,3 Linked To
Xylobiose
pdb|1UR2|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha 1,3 Linked To
Xylotriose
Length = 378
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 22/246 (8%)
Query: 18 IKQVSKD-FPLGSAIASTILGNLPYQ--KWFVKRFNAAVFENELKWYATEAEQGKVNYTV 74
+K KD F +G+A+ +TI + K FN+ EN +KW QG+ N+
Sbjct: 27 LKSAYKDNFLIGAALNATIASGADERLNTLIAKEFNSITPENCMKWGVLRDAQGQWNWKD 86
Query: 75 ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTG-----FQLQSAVNSRIQSLMNKY 129
AD + F + L + GH + W + ++ + +N G LQ + I +L +Y
Sbjct: 87 ADAFVAFGTKHNLHMVGHTLVWHSQIHDEVF-KNADGSYISKAALQKKMEEHITTLAGRY 145
Query: 130 KEEFIHWDVSNEILHFDF------YEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVET 183
K + WDV NE + D + + +G + F A++ DP A L N+YN+ T
Sbjct: 146 KGKLAAWDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLANEVDPKAHLMYNDYNIERT 205
Query: 184 CSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPL--MRAIIDKMTTLKLPIWL 241
++ + + L++ G+ G+G+QGH + P+ + I L L +
Sbjct: 206 GKR-----EATVEMIERLQKRGMPIHGLGIQGHLGIDTPPIAEIEKSIIAFAKLGLRVHF 260
Query: 242 TEVDIS 247
T +D+
Sbjct: 261 TSLDVD 266
>pdb|2UWF|A Chain A, Crystal Structure Of Family 10 Xylanase From Bacillus
Halodurans
Length = 356
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 119/255 (46%), Gaps = 34/255 (13%)
Query: 19 KQVSKDFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQM 78
++ + F +G+A+ L Q +N+ V EN +K + + +G+ N+ AD++
Sbjct: 13 ERYQEQFDIGAAVEPYQLEGRQAQI-LKHHYNSLVAENAMKPVSLQPREGEWNWEGADKI 71
Query: 79 MEFVRANKLIVRGHNIFWENPKYNPTWV-----------------RNLTGFQLQSAVNSR 121
+EF R + + +R H + W + P W R L + +
Sbjct: 72 VEFARKHNMELRFHTLVWHSQV--PEWFFIDENGNRMVDETDPEKRKANKQLLLERMENH 129
Query: 122 IQSLMNKYKEEFIHWDVSNEILHFD------FYEQRLGPKAALHFFQTAHQ-SDPLATLF 174
I++++ +YK++ WDV NE++ D + Q G F+TA + A L+
Sbjct: 130 IKTVVERYKDDVTSWDVVNEVIDDDGGLRESEWYQITGTDYIKVAFETARKYGGEEAKLY 189
Query: 175 MNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKM 232
+N+YN ++V S D + +++L GV DG+G Q H + P++ RA +K
Sbjct: 190 INDYN-----TEVPSKRDDLYNLVKDLLEQGVPIDGVGHQSHIQIGWPSIEDTRASFEKF 244
Query: 233 TTLKLPIWLTEVDIS 247
T+L L +TE+D+S
Sbjct: 245 TSLGLDNQVTELDMS 259
>pdb|1R86|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The E159aE265A MUTANT AT 1.8A RESOLUTION
Length = 379
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 119/252 (47%), Gaps = 37/252 (14%)
Query: 24 DFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVR 83
+F +G+A+ L N + + FN+ V EN +K + + E+GK N+ AD++++F +
Sbjct: 27 EFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAK 86
Query: 84 ANKLIVRGHNIFWENPKYNPTWV-----------------RNLTGFQLQSAVNSRIQSLM 126
AN + +R H + W + P W R L + + I++++
Sbjct: 87 ANGMDIRFHTLVWHSQV--PQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKTIV 144
Query: 127 NKYKEEFIHWDVSNEILHFDFYEQRLGP---KAALHFFQTAHQS------DPLATLFMNE 177
+YK++ +WDV N ++ D + R P A + + + A Q+ D + L+MN+
Sbjct: 145 ERYKDDIKYWDVVNAVVGDDG-KLRNSPWYQIAGIDYIKVAFQAARKYGGDNI-KLYMND 202
Query: 178 YNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKMTTL 235
YN ++V + + +++L+ GV DGIG Q H + P+ + I+ L
Sbjct: 203 YN-----TEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINMFAAL 257
Query: 236 KLPIWLTEVDIS 247
L +T +D+S
Sbjct: 258 GLDNQITALDVS 269
>pdb|1W3H|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W3H|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 359
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 36/251 (14%)
Query: 24 DFPLGSAIAST-----ILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQM 78
DFP+G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 19 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 77
Query: 79 MEFVRANKLIVRGHNIFWENPKYN-PTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWD 137
+ + N V GH + W P Y P W + + + I ++ + + WD
Sbjct: 78 VSWAAQNGQTVHGHTLVWH-PSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWD 135
Query: 138 VSNEILHFD------------------FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179
V NE L FD FY Q GP+ F+ A +DP A L+ N++N
Sbjct: 136 VVNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFN 194
Query: 180 VVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLK- 236
E + ++V+ ++ L +GV DG+G Q H P++ +R + K+ L
Sbjct: 195 TEENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSP 250
Query: 237 -LPIWLTEVDI 246
L I +TE+D+
Sbjct: 251 TLKIKITELDV 261
>pdb|1W2V|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W2V|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 36/251 (14%)
Query: 24 DFPLGSAIAST-----ILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQM 78
DFP+G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 8 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 66
Query: 79 MEFVRANKLIVRGHNIFWENPKYN-PTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWD 137
+ + N V GH + W P Y P W + + + I ++ + + WD
Sbjct: 67 VSWAAQNGQTVHGHTLVWH-PSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWD 124
Query: 138 VSNEILHFD------------------FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179
V NE L FD FY Q GP+ F+ A +DP A L+ N++N
Sbjct: 125 VVNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFN 183
Query: 180 VVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLK- 236
E + ++V+ ++ L +GV DG+G Q H P++ +R + K+ L
Sbjct: 184 TEENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSP 239
Query: 237 -LPIWLTEVDI 246
L I +TE+D+
Sbjct: 240 TLKIKITELDV 250
>pdb|1CLX|A Chain A, Catalytic Core Of Xylanase A
pdb|1CLX|B Chain B, Catalytic Core Of Xylanase A
pdb|1CLX|C Chain C, Catalytic Core Of Xylanase A
pdb|1CLX|D Chain D, Catalytic Core Of Xylanase A
Length = 347
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 36/251 (14%)
Query: 24 DFPLGSAIAST-----ILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQM 78
DFP+G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 7 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 65
Query: 79 MEFVRANKLIVRGHNIFWENPKYN-PTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWD 137
+ + N V GH + W P Y P W + + + I ++ + + WD
Sbjct: 66 VSWAAQNGQTVHGHALVWH-PSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWD 123
Query: 138 VSNEILHFD------------------FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179
V NE L FD FY Q GP+ F+ A +DP A L+ N++N
Sbjct: 124 VVNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFN 182
Query: 180 VVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLK- 236
E + ++V+ ++ L +GV DG+G Q H P++ +R + K+ L
Sbjct: 183 TEENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSP 238
Query: 237 -LPIWLTEVDI 246
L I +TE+D+
Sbjct: 239 TLKIKITELDV 249
>pdb|1W2P|A Chain A, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
pdb|1W2P|B Chain B, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
Length = 348
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 36/251 (14%)
Query: 24 DFPLGSAIAST-----ILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQM 78
DFP+G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 8 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 66
Query: 79 MEFVRANKLIVRGHNIFWENPKYN-PTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWD 137
+ + N V GH + W P Y P W + + + I ++ + + WD
Sbjct: 67 VSWAAQNGQTVHGHALVWH-PSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWD 124
Query: 138 VSNEILHFD------------------FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179
V NE L FD FY Q GP+ F+ A +DP A L+ N++N
Sbjct: 125 VVNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFN 183
Query: 180 VVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLK- 236
E + ++V+ ++ L +GV DG+G Q H P++ +R + K+ L
Sbjct: 184 TEENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSP 239
Query: 237 -LPIWLTEVDI 246
L I +TE+D+
Sbjct: 240 TLKIKITELDV 250
>pdb|1W32|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W32|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 36/251 (14%)
Query: 24 DFPLGSAIAST-----ILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQM 78
DFP+G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 8 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 66
Query: 79 MEFVRANKLIVRGHNIFWENPKYN-PTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWD 137
+ + N V GH + W P Y P W + + + I ++ + + WD
Sbjct: 67 VSWAAQNGQTVHGHALVWH-PSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWD 124
Query: 138 VSNEILHFD------------------FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179
V NE L FD FY Q GP+ F+ A +DP A L+ N++N
Sbjct: 125 VVNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFN 183
Query: 180 VVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLK- 236
E + ++V+ ++ L +GV DG+G Q H P++ +R + K+ L
Sbjct: 184 TEENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSP 239
Query: 237 -LPIWLTEVDI 246
L I +TE+D+
Sbjct: 240 TLKIKITELDV 250
>pdb|2F8Q|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2F8Q|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 353
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 38/253 (15%)
Query: 25 FPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRA 84
F +G+A+ L N K +N+ V EN +K + + E+G + AD ++EF R
Sbjct: 18 FDIGAAVEPHQL-NGRQGKVLKHHYNSIVAENAMKPISLQPEEGVFTWDGADAIVEFARK 76
Query: 85 NKLIVRGHNIFWENPKYNPTWV-----------------RNLTGFQLQSAVNSRIQSLMN 127
N + +R H + W N P W R L + + I++++
Sbjct: 77 NNMNLRFHTLVWHNQV--PDWFFLDEEGNPMVEETNEAKRQANKELLLERLETHIKTVVE 134
Query: 128 KYKEEFIHWDVSNEI----------LHFDFYEQRLGPKAALHFFQTAHQ-SDPLATLFMN 176
+YK++ WDV NE+ L + Q G + F+TA + + A LF+N
Sbjct: 135 RYKDDVTAWDVVNEVVDDGTPNERGLRESVWYQITGDEYIRVAFETARKYAGEDAKLFIN 194
Query: 177 EYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKMTT 234
+YN ++V D + +++L GV DG+G Q H + P + +R ++
Sbjct: 195 DYN-----TEVTPKRDHLYNLVQDLLADGVPIDGVGHQAHIQIDWPTIDEIRTSMEMFAG 249
Query: 235 LKLPIWLTEVDIS 247
L L +TE+D+S
Sbjct: 250 LGLDNQVTELDVS 262
>pdb|2FGL|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2FGL|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 354
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 38/253 (15%)
Query: 25 FPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRA 84
F +G+A+ L N K +N+ V EN +K + + E+G + AD ++EF R
Sbjct: 19 FDIGAAVEPHQL-NGRQGKVLKHHYNSIVAENAMKPISLQPEEGVFTWDGADAIVEFARK 77
Query: 85 NKLIVRGHNIFWENPKYNPTWV-----------------RNLTGFQLQSAVNSRIQSLMN 127
N + +R H + W N P W R L + + I++++
Sbjct: 78 NNMNLRFHTLVWHNQV--PDWFFLDEEGNPMVEETNEAKRQANKELLLERLETHIKTVVE 135
Query: 128 KYKEEFIHWDVSNEI----------LHFDFYEQRLGPKAALHFFQTAHQ-SDPLATLFMN 176
+YK++ WDV NE+ L + Q G + F+TA + + A LF+N
Sbjct: 136 RYKDDVTAWDVVNEVVDDGTPNERGLRESVWYQITGDEYIRVAFETARKYAGEDAKLFIN 195
Query: 177 EYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKMTT 234
+YN ++V D + +++L GV DG+G Q H + P + +R ++
Sbjct: 196 DYN-----TEVTPKRDHLYNLVQDLLADGVPIDGVGHQAHIQIDWPTIDEIRTSMEMFAG 250
Query: 235 LKLPIWLTEVDIS 247
L L +TE+D+S
Sbjct: 251 LGLDNQVTELDVS 263
>pdb|1XYS|A Chain A, Catalytic Core Of Xylanase A E246c Mutant
pdb|1XYS|B Chain B, Catalytic Core Of Xylanase A E246c Mutant
Length = 347
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 36/251 (14%)
Query: 24 DFPLGSAIAST-----ILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQM 78
DFP+G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 7 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 65
Query: 79 MEFVRANKLIVRGHNIFWENPKYN-PTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWD 137
+ + N V GH + W P Y P W + + + I ++ + + WD
Sbjct: 66 VSWAAQNGQTVHGHALVWH-PSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWD 123
Query: 138 VSNEILHFD------------------FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179
V NE L FD FY Q GP+ F+ A +DP A L+ N++N
Sbjct: 124 VVNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFN 182
Query: 180 VVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLK- 236
E + ++V+ ++ L +GV DG+G Q H P++ +R + K+ L
Sbjct: 183 TEENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSP 238
Query: 237 -LPIWLTEVDI 246
L I +T +D+
Sbjct: 239 TLKIKITCLDV 249
>pdb|1E5N|A Chain A, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
pdb|1E5N|B Chain B, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
Length = 348
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 36/251 (14%)
Query: 24 DFPLGSAIAST-----ILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQM 78
DFP+G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 8 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 66
Query: 79 MEFVRANKLIVRGHNIFWENPKYN-PTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWD 137
+ + N V GH + W P Y P W + + + I ++ + + WD
Sbjct: 67 VSWAAQNGQTVHGHALVWH-PSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWD 124
Query: 138 VSNEILHFD------------------FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179
V NE L FD FY Q GP+ F+ A +DP A L+ N++N
Sbjct: 125 VVNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFN 183
Query: 180 VVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF--TVPNLPLMRAIIDKMTTLK- 236
E + ++V+ ++ L +GV DG+G Q H P++ +R + K+ L
Sbjct: 184 TEENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSP 239
Query: 237 -LPIWLTEVDI 246
L I +T +D+
Sbjct: 240 TLKIKITCLDV 250
>pdb|4F8X|A Chain A, Penicillium Canescens Endo-1,4-Beta-Xylanase Xyle
Length = 335
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 121/298 (40%), Gaps = 42/298 (14%)
Query: 38 NLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWE 97
+ Y K + F N +K+ TE EQ N+T +Q +E VR HN+ W
Sbjct: 30 DAAYLKVLKQNFGEITPANAMKFMYTETEQNVFNFTEGEQFLEVAERFGSKVRCHNLVWA 89
Query: 98 NPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD------FYEQR 151
+ + + T +L + + + I + + WDV NE L+ D +
Sbjct: 90 SQVSDFVTSKTWTAKELTAVMKNHIFKTVQHFGRRCYSWDVVNEALNGDGTFSSSVWYDT 149
Query: 152 LGPKAALHFFQTAHQSDPLA-------TLFMNEYNVVETCSDVNSMVDSYISRLRELRRS 204
+G + F+ A ++ LA L+ N+Y + + + + + + LR+
Sbjct: 150 IGEEYFYLAFKYAQEA--LAQIGANDVKLYYNDYGI----ENPGTKSTAVLQLVSNLRKR 203
Query: 205 GVSTDGIGLQGHFTVPNLP-LMRAIIDKMTTLK--LPIWLTEVDI--------SSKLSKE 253
G+ DG+GL+ HF V P L + K +K L + +TE+D+ ++ K+
Sbjct: 204 GIRIDGVGLESHFIVGETPSLADQLATKQAYIKANLDVAVTELDVRFSTVPYYTAAAQKQ 263
Query: 254 KQAVYLEQVLREGFSHPSVSGIMLW----------AALHPNGCYQMCLTDNNLQNLPA 301
+ Y V + P G+++W +A G CL +N L+ PA
Sbjct: 264 QAEDYYVSVASCMNAGPRCIGVVVWDFDDAYSWVPSAFAGQG--GACLFNNTLEAKPA 319
>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
Length = 356
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 109/254 (42%), Gaps = 42/254 (16%)
Query: 25 FPLGSAI-ASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVR 83
FP+G+AI G + + + K N V EN +K + + +G + AD++++F +
Sbjct: 16 FPIGAAIEPGYTTGQI--AELYKKHVNMLVAENAMKPASLQPTEGNFQWADADRIVQFAK 73
Query: 84 ANKLIVRGHNIFWENPKYNPTWV-----------------RNLTGFQLQSAVNSRIQSLM 126
N + +R H + W N P W R L + + I++++
Sbjct: 74 ENGMELRFHTLVWHN--QTPDWFFLDKEGKPMVEETDPQKREENRKLLLQRLENYIRAVV 131
Query: 127 NKYKEEFIHWDVSNEILHF-DFYEQRLGP----------KAALHFFQTAHQSDPLATLFM 175
+YK++ WDV NE++ D R P + A + A SD L++
Sbjct: 132 LRYKDDIKSWDVVNEVIEPNDPGGMRNSPWYQITGTEYIEVAFRATREAGGSD--IKLYI 189
Query: 176 NEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAI--IDKMT 233
N+YN +D D ++ L GV DG+G Q H + N P+ R I I K
Sbjct: 190 NDYN-----TDDPVKRDILYELVKNLLEKGVPIDGVGHQTHIDIYNPPVERIIESIKKFA 244
Query: 234 TLKLPIWLTEVDIS 247
L L +TE+D+S
Sbjct: 245 GLGLDNIITELDMS 258
>pdb|3RDK|A Chain A, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|3RDK|B Chain B, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|4E4P|A Chain A, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|4E4P|B Chain B, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|3RO8|A Chain A, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|B Chain B, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|C Chain C, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|D Chain D, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|E Chain E, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|F Chain F, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|G Chain G, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|H Chain H, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
Length = 341
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 118/265 (44%), Gaps = 38/265 (14%)
Query: 18 IKQVSK-DFPLGSAIASTILGNLPYQKWFVKRFNAAVFE-NELKWYATEAEQGKVNYTVA 75
+K V K DF +G+AI++ L + +K + V N +K A + +G +T A
Sbjct: 7 LKDVYKNDFLIGNAISAEDLEGTRLE--LLKMHHDVVTAGNAMKPDALQPTKGNFTFTAA 64
Query: 76 DQMMEFVRANKLIVRGHNIFWENPKYNPTWV-------RNLTGFQLQSAVN---SRIQSL 125
D M++ V A + + GH + W + +P W+ N A++ + IQ++
Sbjct: 65 DAMIDKVLAEGMKMHGHVLVWH--QQSPAWLNTKKDDNNNTVPLGRDEALDNLRTHIQTV 122
Query: 126 MNKYKEEFIHWDVSNEILH------FDF--------YEQRLGPKAALHFFQTAHQ---SD 168
M + + I WDV NE ++ D+ + Q +G F A + +
Sbjct: 123 MKHFGNKVISWDVVNEAMNDNPSNPADYKASLRQTPWYQAIGSDYVEQAFLAAREVLDEN 182
Query: 169 PL--ATLFMNEYNV--VETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPL 224
P L+ N+YN + + +MV R + DG+G+QGH+ + P
Sbjct: 183 PSWNIKLYYNDYNEDNQNKATAIYNMVKDINDRYAAAHNGKLLIDGVGMQGHYNINTNPD 242
Query: 225 -MRAIIDKMTTLKLPIWLTEVDISS 248
++ ++K +L + + ++E+D+++
Sbjct: 243 NVKLSLEKFISLGVEVSVSELDVTA 267
>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
Length = 540
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 134/357 (37%), Gaps = 78/357 (21%)
Query: 25 FPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTV------ADQM 78
F +GS + S + N + ++ FN+ ENE+K AT + G N + A +
Sbjct: 192 FRVGSVLNSGTVNNSSIKALILREFNSITCENEMKPDATLVQSGSTNTNIRVSLNRAASI 251
Query: 79 MEFVRANKLIVRGHNIFW----------ENPKYNPTWVRNLTGFQLQSAVNSRIQSL--- 125
+ F N + VRGH + W +N + N WV QS ++ R++S
Sbjct: 252 LNFCAQNNIAVRGHTLVWHSQTPQWFFKDNFQDNGNWVS-------QSVMDQRLESYIKN 304
Query: 126 -----------MNKYKEEFIHWDVSNEILHFDFYEQRLGP----------------KAAL 158
+N Y + ++ VS++ +Y P K
Sbjct: 305 MFAEIQRQYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIE 364
Query: 159 HFFQTAHQSDPL-ATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF 217
F A + P L+ N+YN + D S L G+ DG+G+Q H
Sbjct: 365 KAFTYARKYAPANCKLYYNDYNEY-----WDHKRDCIASICANLYNKGL-LDGVGMQSHI 418
Query: 218 TV-----PNLPLMRAIIDKMTTLKLPIWLTEVDISS---KLSKEKQAVYLEQVLREGF-- 267
+ +A + K + + +TE+DIS+ K S ++QA + V +
Sbjct: 419 NADMNGFSGIQNYKAALQKYINIGCDVQITELDISTENGKFSLQQQADKYKAVFQAAVDI 478
Query: 268 ----SHPSVSGIMLWAALHPN---GCYQMCLTDN-NLQNLPAGDVVDKLLKECQTGE 316
S V+ + +W N G L N N Q PA + V ++ + + G+
Sbjct: 479 NRTSSKGKVTAVCVWGPNDANTWLGSQNAPLLFNANNQPKPAYNAVASIIPQSEWGD 535
>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
Length = 540
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 134/350 (38%), Gaps = 64/350 (18%)
Query: 25 FPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTV------ADQM 78
F +GS + S + N + ++ FN+ ENE K AT + G N + A +
Sbjct: 192 FRVGSVLNSGTVNNSSIKALILREFNSITCENEXKPDATLVQSGSTNTNIRVSLNRAASI 251
Query: 79 MEFVRANKLIVRGHNIFW----------ENPKYNPTWV-RNLTGFQLQSAVNSRIQSL-- 125
+ F N + VRGH + W +N + N WV +++ +L+S + + +
Sbjct: 252 LNFCAQNNIAVRGHTLVWHSQTPQWFFKDNFQDNGNWVSQSVXDQRLESYIKNXFAEIQR 311
Query: 126 ----MNKYKEEFIHWDVSNEILHFDFYEQRLGP----------------KAALHFFQTAH 165
+N Y + ++ VS++ +Y P K F A
Sbjct: 312 QYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAFTYAR 371
Query: 166 QSDPL-ATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV----- 219
+ P L+ N+YN + D S L G+ DG+G Q H
Sbjct: 372 KYAPANCKLYYNDYNEY-----WDHKRDCIASICANLYNKGL-LDGVGXQSHINADXNGF 425
Query: 220 PNLPLMRAIIDKMTTLKLPIWLTEVDISS---KLSKEKQAVYLEQVLREGF------SHP 270
+ +A + K + + +TE+DIS+ K S ++QA + V + S
Sbjct: 426 SGIQNYKAALQKYINIGCDVQITELDISTENGKFSLQQQADKYKAVFQAAVDINRTSSKG 485
Query: 271 SVSGIMLWAALHPN---GCYQMCLTDN-NLQNLPAGDVVDKLLKECQTGE 316
V+ + +W N G L N N Q PA + V ++ + + G+
Sbjct: 486 KVTAVCVWGPNDANTWLGSQNAPLLFNANNQPKPAYNAVASIIPQSEWGD 535
>pdb|2YIB|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 770
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 60 WYATEAEQGKVNYTVA--DQMMEFVRANKLIVRGHNIFWEN----PKYNPTWVRNLTGFQ 113
WY+ + E+G+ N T MM + L+ RG W N P+YNPTW F
Sbjct: 398 WYSIDLEKGEANCTPQHMQAMMYY-----LLTRG----WTNEDGSPRYNPTWAT----FA 444
Query: 114 LQSAVNSRIQS---LMNKYKEEFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPL 170
+ A + + S LMN + + + F F L + + A + +P+
Sbjct: 445 MNVAPSMVVDSSCLLMNLQLKTYGQGSGN----AFTFLNNHLMSTIVVAEWVKAGKPNPM 500
Query: 171 ATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVST---DGIGLQGHFTVPNLPLMR 226
FM+ +E + +N ++ + LRE V T DG G +LP +R
Sbjct: 501 TKEFMD----LEEKTGINFKIERELKNLRETIVEAVETAPQDGYLADGS----DLPPIR 551
>pdb|2YI8|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI9|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YIA|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|F Chain F, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|G Chain G, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|H Chain H, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 799
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 60 WYATEAEQGKVNYTVA--DQMMEFVRANKLIVRGHNIFWEN----PKYNPTWVRNLTGFQ 113
WY+ + E+G+ N T MM + L+ RG W N P+YNPTW F
Sbjct: 398 WYSIDLEKGEANCTPQHMQAMMYY-----LLTRG----WTNEDGSPRYNPTWAT----FA 444
Query: 114 LQSAVNSRIQS---LMNKYKEEFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPL 170
+ A + + S LMN + + + F F L + + A + +P+
Sbjct: 445 MNVAPSMVVDSSCLLMNLQLKTYGQGSGN----AFTFLNNHLMSTIVVAEWVKAGKPNPM 500
Query: 171 ATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVST---DGIGLQGHFTVPNLPLMR 226
FM+ +E + +N ++ + LRE V T DG G +LP +R
Sbjct: 501 TKEFMD----LEEKTGINFKIERELKNLRETIVEAVETAPQDGYLADGS----DLPPIR 551
>pdb|2YIB|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|3ZED|A Chain A, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|B Chain B, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|C Chain C, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
Length = 853
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 60 WYATEAEQGKVNYTVA--DQMMEFVRANKLIVRGHNIFWEN----PKYNPTWVRNLTGFQ 113
WY+ + E+G+ N T MM + L+ RG W N P+YNPTW F
Sbjct: 398 WYSIDLEKGEANCTPQHMQAMMYY-----LLTRG----WTNEDGSPRYNPTWAT----FA 444
Query: 114 LQSAVNSRIQS---LMNKYKEEFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPL 170
+ A + + S LMN + + + F F L + + A + +P+
Sbjct: 445 MNVAPSMVVDSSCLLMNLQLKTYGQGSGN----AFTFLNNHLMSTIVVAEWVKAGKPNPM 500
Query: 171 ATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVST---DGIGLQGHFTVPNLPLMR 226
FM+ +E + +N ++ + LRE V T DG G +LP +R
Sbjct: 501 TKEFMD----LEEKTGINFKIERELKNLRETIVEAVETAPQDGYLADGS----DLPPIR 551
>pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 123 QSLMNKYKEEFIHWDVSNEILHFDFYEQRLG----------PKAALH-FFQTAHQSDPLA 171
+ L NK F+ W + +EI Y+QR A LH F Q D L
Sbjct: 543 RGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIDMLQ 602
Query: 172 TLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRA---I 228
+ ++ ++ DV+S V S +L++ + + L F VP P ++A +
Sbjct: 603 KVTIDIKSLSAEKYDVSSQVIS------QLKQKLENLQNLNLPQSFRVPYDPGLKAGALV 656
Query: 229 IDK---MTTLKLPIWL 241
I+K M + K P+WL
Sbjct: 657 IEKCKVMASKKKPLWL 672
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 123 QSLMNKYKEEFIHWDVSNEILHFDFYEQRLG----------PKAALH-FFQTAHQSDPLA 171
+ L NK F+ W + +EI Y+QR A LH F Q D L
Sbjct: 543 RGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIDMLQ 602
Query: 172 TLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRA---I 228
+ ++ ++ DV+S V S +L++ + + L F VP P ++A +
Sbjct: 603 KVTIDIKSLSAEKYDVSSQVIS------QLKQKLENLQNLNLPQSFRVPYDPGLKAGALV 656
Query: 229 IDK---MTTLKLPIWL 241
I+K M + K P+WL
Sbjct: 657 IEKCKVMASKKKPLWL 672
>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor
Length = 966
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 21/135 (15%)
Query: 123 QSLMNKYKEEFIHWDVSNEILHFDFYEQRLGP--KAALHFFQTAHQSDPLATLFMNEYNV 180
+ L NK F+ W + +EI Y+QR +A L TA D F + V
Sbjct: 542 RGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHD-----FTQQVQV 596
Query: 181 VETCSDVNSMVDSYISR--------LRELRRSGVSTDGIGLQGHFTVPNLPLMRA---II 229
+E V + S + + +L++ + + L F VP P ++A I
Sbjct: 597 IEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNLNLPESFRVPYDPGLKAGALAI 656
Query: 230 DK---MTTLKLPIWL 241
+K M + K P+WL
Sbjct: 657 EKCKVMASKKKPLWL 671
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,091,651
Number of Sequences: 62578
Number of extensions: 452133
Number of successful extensions: 1227
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 60
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)