Query 036715
Match_columns 362
No_of_seqs 225 out of 1461
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00331 Glyco_hydro_10: Glyco 100.0 6.5E-71 1.4E-75 529.2 24.4 281 20-307 5-318 (320)
2 COG3693 XynA Beta-1,4-xylanase 100.0 1.3E-63 2.7E-68 459.3 26.3 282 20-309 28-341 (345)
3 smart00633 Glyco_10 Glycosyl h 100.0 1.1E-61 2.4E-66 451.9 26.9 242 58-305 1-254 (254)
4 PF07745 Glyco_hydro_53: Glyco 99.8 5E-16 1.1E-20 148.6 26.5 248 43-305 31-332 (332)
5 PF00150 Cellulase: Cellulase 99.6 1.5E-13 3.2E-18 128.9 19.7 244 4-281 1-278 (281)
6 PF01229 Glyco_hydro_39: Glyco 99.6 2.8E-13 6.1E-18 137.5 22.6 280 38-333 38-389 (486)
7 PF02449 Glyco_hydro_42: Beta- 99.6 6.1E-13 1.3E-17 130.8 21.8 249 45-313 20-372 (374)
8 TIGR03356 BGL beta-galactosida 99.5 4.2E-12 9.1E-17 126.7 23.5 243 47-297 66-414 (427)
9 PF00232 Glyco_hydro_1: Glycos 99.4 3E-11 6.4E-16 121.8 18.7 257 47-310 70-451 (455)
10 PF11790 Glyco_hydro_cc: Glyco 99.3 9E-11 1.9E-15 108.5 18.4 166 130-305 63-239 (239)
11 PLN02998 beta-glucosidase 99.3 4.6E-10 1E-14 113.7 24.7 255 48-310 95-486 (497)
12 PRK13511 6-phospho-beta-galact 99.3 1.7E-09 3.8E-14 109.2 26.8 258 47-311 66-465 (469)
13 PRK10150 beta-D-glucuronidase; 99.2 3.4E-09 7.4E-14 110.6 25.7 228 47-309 325-592 (604)
14 PRK09852 cryptic 6-phospho-bet 99.2 4.6E-09 1E-13 106.0 25.7 258 47-310 83-467 (474)
15 PRK15014 6-phospho-beta-glucos 99.2 6.2E-09 1.3E-13 105.2 25.9 259 47-311 81-472 (477)
16 PLN02814 beta-glucosidase 99.2 4.6E-09 1E-13 106.7 24.4 256 48-311 90-482 (504)
17 PRK09589 celA 6-phospho-beta-g 99.2 1E-08 2.2E-13 103.7 26.6 257 47-310 79-470 (476)
18 PRK09593 arb 6-phospho-beta-gl 99.2 9.4E-09 2E-13 104.0 26.0 258 47-311 85-472 (478)
19 TIGR01233 lacG 6-phospho-beta- 99.2 1.4E-08 2.9E-13 102.6 26.9 258 47-311 65-463 (467)
20 PLN02849 beta-glucosidase 99.1 1.8E-08 4E-13 102.3 24.3 256 47-311 91-482 (503)
21 COG3867 Arabinogalactan endo-1 99.0 8.3E-08 1.8E-12 88.7 19.3 279 17-307 31-393 (403)
22 COG2723 BglB Beta-glucosidase/ 98.9 3.4E-07 7.3E-12 90.7 21.2 265 40-310 60-451 (460)
23 PF01301 Glyco_hydro_35: Glyco 98.7 9.3E-06 2E-10 78.2 24.1 260 24-311 9-318 (319)
24 PF02836 Glyco_hydro_2_C: Glyc 98.5 9.8E-06 2.1E-10 77.3 19.6 215 46-309 47-293 (298)
25 PRK10340 ebgA cryptic beta-D-g 98.2 0.00055 1.2E-08 75.7 26.4 205 46-310 366-600 (1021)
26 PF02055 Glyco_hydro_30: O-Gly 98.0 0.00059 1.3E-08 69.5 19.1 305 9-333 58-447 (496)
27 PF12876 Cellulase-like: Sugar 97.8 3.1E-05 6.8E-10 60.2 4.9 53 125-177 1-64 (88)
28 PLN03059 beta-galactosidase; P 97.8 0.00045 9.8E-09 73.4 14.1 149 24-177 44-222 (840)
29 COG1874 LacA Beta-galactosidas 97.7 0.00018 3.9E-09 75.1 9.1 117 21-142 12-161 (673)
30 PF14587 Glyco_hydr_30_2: O-Gl 97.6 0.0041 9E-08 60.7 17.0 215 63-284 91-360 (384)
31 PRK09525 lacZ beta-D-galactosi 97.6 0.025 5.4E-07 62.8 24.4 213 46-310 382-626 (1027)
32 COG3664 XynB Beta-xylosidase [ 97.3 0.0035 7.5E-08 61.1 12.2 232 48-305 18-288 (428)
33 COG3934 Endo-beta-mannanase [C 96.2 0.023 5.1E-07 56.5 8.6 223 71-313 65-323 (587)
34 COG5520 O-Glycosyl hydrolase [ 95.4 0.51 1.1E-05 45.6 14.0 186 82-284 111-313 (433)
35 COG2730 BglC Endoglucanase [Ca 95.4 0.19 4.1E-06 50.2 12.0 119 46-171 84-219 (407)
36 PF13204 DUF4038: Protein of u 95.0 0.083 1.8E-06 50.3 7.6 226 24-277 13-280 (289)
37 PF01373 Glyco_hydro_14: Glyco 94.3 0.032 6.9E-07 54.9 3.0 88 42-133 23-144 (402)
38 PLN00197 beta-amylase; Provisi 94.2 0.43 9.3E-06 48.6 10.7 62 44-108 136-207 (573)
39 PLN02161 beta-amylase 94.0 0.43 9.3E-06 48.2 10.2 63 43-108 125-197 (531)
40 PLN02801 beta-amylase 93.9 0.23 5.1E-06 50.0 8.1 63 43-108 45-117 (517)
41 PLN02803 beta-amylase 93.6 0.56 1.2E-05 47.7 10.1 63 43-108 115-187 (548)
42 TIGR01370 cysRS possible cyste 93.2 2.9 6.2E-05 40.3 14.0 156 77-248 85-276 (315)
43 PLN02705 beta-amylase 92.4 0.96 2.1E-05 46.7 10.0 63 43-108 276-348 (681)
44 PF13620 CarboxypepD_reg: Carb 92.2 0.47 1E-05 35.5 5.9 45 317-362 30-81 (82)
45 PLN02905 beta-amylase 92.1 1.1 2.5E-05 46.3 10.1 62 44-108 295-366 (702)
46 KOG0626 Beta-glucosidase, lact 91.9 0.75 1.6E-05 46.8 8.4 91 48-144 104-204 (524)
47 PF00332 Glyco_hydro_17: Glyco 91.9 0.4 8.6E-06 46.1 6.3 77 223-299 214-305 (310)
48 KOG0496 Beta-galactosidase [Ca 91.4 0.42 9.1E-06 49.6 6.1 117 24-143 34-176 (649)
49 PF14488 DUF4434: Domain of un 88.7 15 0.00033 31.8 13.1 134 36-179 17-163 (166)
50 PF02638 DUF187: Glycosyl hydr 88.5 17 0.00037 34.9 14.5 179 46-233 30-280 (311)
51 PF02057 Glyco_hydro_59: Glyco 87.6 20 0.00044 37.9 15.0 173 77-282 116-295 (669)
52 PF13547 GTA_TIM: GTA TIM-barr 87.4 1.2 2.6E-05 41.8 5.4 33 236-268 206-265 (299)
53 PF05688 DUF824: Salmonella re 86.6 0.64 1.4E-05 31.5 2.4 21 1-21 19-39 (47)
54 PF12891 Glyco_hydro_44: Glyco 86.0 2.1 4.6E-05 39.4 6.2 59 117-175 105-177 (239)
55 COG1453 Predicted oxidoreducta 84.6 34 0.00073 33.6 13.9 199 48-280 17-252 (391)
56 PF13620 CarboxypepD_reg: Carb 82.5 1.1 2.4E-05 33.4 2.4 26 2-27 5-30 (82)
57 smart00634 BID_1 Bacterial Ig- 79.6 1.6 3.5E-05 33.7 2.6 24 1-24 24-47 (92)
58 PF01120 Alpha_L_fucos: Alpha- 76.8 23 0.00049 34.5 10.2 92 73-176 138-244 (346)
59 PF13715 DUF4480: Domain of un 75.5 13 0.00028 28.0 6.6 36 317-352 27-67 (88)
60 KOG0626 Beta-glucosidase, lact 75.2 14 0.0003 37.9 8.3 90 222-311 391-508 (524)
61 PF03662 Glyco_hydro_79n: Glyc 72.4 8.2 0.00018 37.2 5.7 20 71-90 107-126 (319)
62 PRK07534 methionine synthase I 66.9 53 0.0011 32.0 10.1 83 155-242 85-176 (336)
63 smart00812 Alpha_L_fucos Alpha 66.6 58 0.0012 32.3 10.5 92 73-177 128-233 (384)
64 COG5016 Pyruvate/oxaloacetate 65.7 1.1E+02 0.0023 30.7 11.6 106 117-242 99-205 (472)
65 PF02574 S-methyl_trans: Homoc 65.5 32 0.00069 32.7 8.2 117 154-277 81-219 (305)
66 PF02369 Big_1: Bacterial Ig-l 63.1 4.3 9.3E-05 32.0 1.5 17 2-18 30-46 (100)
67 PF08308 PEGA: PEGA domain; I 63.0 16 0.00035 26.4 4.5 32 330-362 34-67 (71)
68 PF00775 Dioxygenase_C: Dioxyg 62.0 6.8 0.00015 34.7 2.7 23 1-23 34-56 (183)
69 PF13715 DUF4480: Domain of un 61.7 6.7 0.00015 29.6 2.3 21 2-22 5-26 (88)
70 PF00701 DHDPS: Dihydrodipicol 61.5 1.2E+02 0.0026 28.4 11.4 47 193-241 84-132 (289)
71 COG3250 LacZ Beta-galactosidas 60.7 88 0.0019 34.3 11.2 98 47-177 333-433 (808)
72 cd00421 intradiol_dioxygenase 60.6 9.6 0.00021 32.3 3.3 23 2-24 17-39 (146)
73 PRK09485 mmuM homocysteine met 60.5 68 0.0015 30.6 9.5 47 191-242 139-187 (304)
74 TIGR02423 protocat_alph protoc 60.2 9.4 0.0002 34.1 3.2 23 2-24 45-67 (193)
75 cd03459 3,4-PCD Protocatechuat 59.9 9.8 0.00021 32.8 3.2 23 2-24 21-43 (158)
76 cd03464 3,4-PCD_beta Protocate 59.7 9.8 0.00021 34.7 3.3 23 2-24 71-93 (220)
77 COG3485 PcaH Protocatechuate 3 59.6 10 0.00022 34.8 3.4 23 2-24 78-100 (226)
78 COG3534 AbfA Alpha-L-arabinofu 58.9 30 0.00066 34.8 6.7 80 132-219 164-247 (501)
79 PF03198 Glyco_hydro_72: Gluca 58.9 1.5E+02 0.0034 28.5 11.3 225 48-309 66-310 (314)
80 PRK12331 oxaloacetate decarbox 58.2 1.7E+02 0.0038 29.6 12.3 105 117-241 97-202 (448)
81 cd03463 3,4-PCD_alpha Protocat 58.1 11 0.00023 33.5 3.2 23 2-24 42-64 (185)
82 TIGR02422 protocat_beta protoc 58.0 11 0.00024 34.4 3.3 23 2-24 66-88 (220)
83 PRK14041 oxaloacetate decarbox 58.0 2.2E+02 0.0048 29.1 13.0 26 117-142 96-121 (467)
84 PF13115 YtkA: YtkA-like 57.9 8.6 0.00019 29.0 2.3 21 4-24 28-48 (86)
85 COG2342 Predicted extracellula 57.8 1.7E+02 0.0037 27.7 14.8 209 36-280 31-280 (300)
86 PRK14042 pyruvate carboxylase 57.4 1.6E+02 0.0035 31.1 12.2 92 117-219 97-208 (596)
87 PF03746 LamB_YcsF: LamB/YcsF 56.9 75 0.0016 29.4 8.6 93 72-176 41-143 (242)
88 cd03869 M14_CPX_like Peptidase 56.8 9.4 0.0002 38.1 2.9 25 2-26 334-358 (405)
89 PRK09936 hypothetical protein; 56.3 1.9E+02 0.0041 27.6 12.4 157 37-214 36-214 (296)
90 cd03863 M14_CPD_II The second 56.2 32 0.00069 34.0 6.5 45 317-362 324-373 (375)
91 TIGR01235 pyruv_carbox pyruvat 55.6 1.6E+02 0.0034 33.8 12.5 28 116-143 625-652 (1143)
92 COG5309 Exo-beta-1,3-glucanase 55.5 1.9E+02 0.0041 27.4 14.0 119 132-268 133-271 (305)
93 TIGR02465 chlorocat_1_2 chloro 55.3 11 0.00025 34.9 3.0 23 2-24 104-126 (246)
94 cd03462 1,2-CCD chlorocatechol 55.2 12 0.00025 34.8 3.1 23 2-24 105-127 (247)
95 PRK09282 pyruvate carboxylase 55.1 2.4E+02 0.0051 29.8 13.0 56 154-219 153-208 (592)
96 cd03458 Catechol_intradiol_dio 54.9 12 0.00026 34.9 3.1 23 2-24 110-132 (256)
97 PRK12330 oxaloacetate decarbox 54.4 2.6E+02 0.0056 28.9 12.8 27 117-143 98-124 (499)
98 TIGR01531 glyc_debranch glycog 51.4 1.5E+02 0.0031 34.6 11.2 87 75-176 451-545 (1464)
99 PRK12999 pyruvate carboxylase; 51.4 1.6E+02 0.0036 33.6 11.8 25 118-142 629-653 (1146)
100 cd06245 M14_CPD_III The third 51.1 45 0.00098 32.8 6.7 44 318-362 313-361 (363)
101 PRK03170 dihydrodipicolinate s 50.9 2.2E+02 0.0047 26.7 12.1 21 67-87 16-36 (292)
102 TIGR02439 catechol_proteo cate 50.8 15 0.00033 34.8 3.1 23 2-24 134-156 (285)
103 cd03866 M14_CPM Peptidase M14 50.2 13 0.00028 36.7 2.7 21 2-22 300-320 (376)
104 cd03865 M14_CPE_H Peptidase M1 49.0 14 0.00031 36.8 2.8 22 2-23 331-352 (402)
105 TIGR02438 catachol_actin catec 49.0 18 0.00039 34.3 3.3 23 2-24 138-160 (281)
106 cd00952 CHBPH_aldolase Trans-o 49.0 2.4E+02 0.0053 26.8 11.6 88 67-178 23-113 (309)
107 cd03460 1,2-CTD Catechol 1,2 d 49.0 17 0.00036 34.5 3.1 23 2-24 130-152 (282)
108 cd00954 NAL N-Acetylneuraminic 48.9 2.3E+02 0.005 26.5 12.6 21 67-87 15-36 (288)
109 cd03865 M14_CPE_H Peptidase M1 48.7 49 0.0011 33.1 6.5 44 318-362 353-401 (402)
110 PF14871 GHL6: Hypothetical gl 48.3 44 0.00095 27.8 5.2 90 40-130 4-124 (132)
111 COG2040 MHT1 Homocysteine/sele 48.0 49 0.0011 31.4 6.0 47 195-247 137-183 (300)
112 cd03864 M14_CPN Peptidase M14 47.8 15 0.00033 36.5 2.8 22 2-23 321-342 (392)
113 cd03461 1,2-HQD Hydroxyquinol 47.6 17 0.00038 34.3 3.0 23 2-24 126-148 (277)
114 KOG2649 Zinc carboxypeptidase 47.6 14 0.00031 37.3 2.5 25 2-26 383-407 (500)
115 TIGR01108 oadA oxaloacetate de 47.1 3.7E+02 0.0079 28.4 12.9 25 118-142 93-117 (582)
116 COG5266 CbiK ABC-type Co2+ tra 46.9 14 0.0003 34.3 2.2 21 1-22 176-196 (264)
117 PF00682 HMGL-like: HMGL-like 46.8 2.2E+02 0.0047 25.6 12.5 125 73-219 67-192 (237)
118 PF08400 phage_tail_N: Prophag 46.7 23 0.00049 29.7 3.2 21 3-23 9-29 (134)
119 PLN02489 homocysteine S-methyl 46.1 2E+02 0.0044 27.9 10.3 48 191-243 166-215 (335)
120 COG4124 ManB Beta-mannanase [C 45.6 1.4E+02 0.0031 29.1 8.8 120 115-248 160-299 (355)
121 PRK14040 oxaloacetate decarbox 45.2 4E+02 0.0086 28.2 13.1 132 64-219 56-209 (593)
122 PF07210 DUF1416: Protein of u 45.0 23 0.00049 27.1 2.7 23 2-25 13-35 (85)
123 cd00408 DHDPS-like Dihydrodipi 45.0 2.6E+02 0.0056 25.9 12.1 21 67-87 12-32 (281)
124 PF03659 Glyco_hydro_71: Glyco 44.8 1E+02 0.0022 30.6 8.1 76 191-271 16-92 (386)
125 PF07611 DUF1574: Protein of u 43.9 30 0.00064 33.8 4.0 62 72-141 251-312 (345)
126 PF11974 MG1: Alpha-2-macroglo 43.7 29 0.00063 27.2 3.3 27 6-32 23-49 (97)
127 PRK12569 hypothetical protein; 43.5 2.1E+02 0.0045 26.6 9.2 93 72-176 46-148 (245)
128 cd03868 M14_CPD_I The first ca 43.0 21 0.00046 35.1 3.0 21 2-22 301-321 (372)
129 cd00953 KDG_aldolase KDG (2-ke 42.9 2.9E+02 0.0062 25.9 12.2 20 68-87 15-34 (279)
130 cd06547 GH85_ENGase Endo-beta- 42.8 63 0.0014 31.5 6.1 94 77-175 50-146 (339)
131 PRK08645 bifunctional homocyst 42.8 2.3E+02 0.005 30.0 10.8 83 155-242 83-171 (612)
132 cd06810 PLPDE_III_ODC_DapDC_li 42.8 1.7E+02 0.0036 28.3 9.3 51 192-246 148-207 (368)
133 cd03858 M14_CP_N-E_like Carbox 42.8 88 0.0019 30.7 7.3 46 317-362 324-374 (374)
134 cd03863 M14_CPD_II The second 42.7 21 0.00045 35.3 2.8 22 2-23 302-324 (375)
135 COG2160 AraA L-arabinose isome 42.6 77 0.0017 31.6 6.5 65 209-279 11-80 (497)
136 PRK12581 oxaloacetate decarbox 42.4 3.9E+02 0.0085 27.3 12.3 62 69-143 69-132 (468)
137 PF14701 hDGE_amylase: glucano 42.0 98 0.0021 31.1 7.4 81 75-170 338-422 (423)
138 cd03864 M14_CPN Peptidase M14 41.9 51 0.0011 32.8 5.5 44 317-362 342-391 (392)
139 COG3233 Predicted deacetylase 41.3 2.1E+02 0.0045 26.2 8.6 76 155-241 18-114 (233)
140 COG1540 Uncharacterized protei 41.3 2.2E+02 0.0047 26.3 8.8 91 73-175 44-144 (252)
141 TIGR02313 HpaI-NOT-DapA 2,4-di 41.3 2.8E+02 0.006 26.2 10.2 60 66-136 14-73 (294)
142 cd03867 M14_CPZ Peptidase M14- 41.1 21 0.00046 35.5 2.6 21 2-22 323-343 (395)
143 cd06563 GH20_chitobiase-like T 40.9 49 0.0011 32.3 5.2 67 64-132 77-167 (357)
144 PF02383 Syja_N: SacI homology 40.4 86 0.0019 30.0 6.7 49 87-139 216-271 (319)
145 COG1060 ThiH Thiamine biosynth 40.1 2.1E+02 0.0045 28.3 9.4 123 151-282 119-257 (370)
146 TIGR02873 spore_ylxY probable 39.5 1.2E+02 0.0025 28.5 7.3 57 148-218 91-147 (268)
147 cd06599 GH31_glycosidase_Aec37 39.3 70 0.0015 30.7 5.9 53 191-243 28-93 (317)
148 PF01026 TatD_DNase: TatD rela 38.5 2.6E+02 0.0057 25.6 9.4 15 253-267 107-121 (255)
149 cd06564 GH20_DspB_LnbB-like Gl 38.5 38 0.00081 32.7 3.9 33 65-97 74-112 (326)
150 KOG2499 Beta-N-acetylhexosamin 38.4 66 0.0014 32.8 5.5 61 71-131 248-327 (542)
151 KOG1579 Homocysteine S-methylt 38.3 1.1E+02 0.0023 29.5 6.7 49 192-245 148-198 (317)
152 PF02126 PTE: Phosphotriestera 37.6 1.8E+02 0.0039 27.9 8.3 166 74-268 66-249 (308)
153 PRK05926 hypothetical protein; 37.6 1.2E+02 0.0027 29.9 7.3 125 152-282 128-265 (370)
154 cd06604 GH31_glucosidase_II_Ma 37.4 70 0.0015 30.9 5.6 52 191-242 23-83 (339)
155 PRK09875 putative hydrolase; P 36.9 3.8E+02 0.0081 25.5 11.9 137 74-230 62-201 (292)
156 PRK10425 DNase TatD; Provision 36.6 3.5E+02 0.0076 25.1 11.6 10 233-242 118-127 (258)
157 COG1038 PycA Pyruvate carboxyl 36.2 3.2E+02 0.0069 30.1 10.2 86 157-247 659-748 (1149)
158 TIGR02764 spore_ybaN_pdaB poly 36.1 1.4E+02 0.0029 26.0 6.8 55 150-218 14-68 (191)
159 PRK10785 maltodextrin glucosid 35.5 2.2E+02 0.0048 29.9 9.3 63 112-177 305-372 (598)
160 cd06245 M14_CPD_III The third 35.4 29 0.00062 34.2 2.5 20 2-21 292-311 (363)
161 PF00763 THF_DHG_CYH: Tetrahyd 34.4 2.5E+02 0.0053 22.6 8.0 82 193-280 15-96 (117)
162 PRK05406 LamB/YcsF family prot 34.3 2.9E+02 0.0062 25.7 8.7 93 72-176 43-145 (246)
163 cd06602 GH31_MGAM_SI_GAA This 34.1 77 0.0017 30.7 5.3 52 191-242 23-85 (339)
164 PRK08445 hypothetical protein; 32.8 4.7E+02 0.01 25.4 10.5 126 152-282 103-240 (348)
165 PRK10076 pyruvate formate lyas 32.6 3.5E+02 0.0075 24.4 8.9 99 154-264 53-155 (213)
166 COG5520 O-Glycosyl hydrolase [ 32.2 95 0.002 30.5 5.3 54 77-137 157-215 (433)
167 cd06565 GH20_GcnA-like Glycosy 31.9 86 0.0019 29.9 5.1 108 67-177 54-186 (301)
168 COG0646 MetH Methionine syntha 31.9 3.9E+02 0.0086 25.6 9.3 83 156-243 94-195 (311)
169 PF05751 FixH: FixH; InterPro 31.5 47 0.001 27.6 2.9 23 1-23 73-95 (146)
170 TIGR03212 uraD_N-term-dom puta 31.1 4.6E+02 0.01 24.9 9.9 46 196-242 232-282 (297)
171 PLN02417 dihydrodipicolinate s 30.9 4.5E+02 0.0097 24.6 15.2 93 66-179 15-107 (280)
172 cd06570 GH20_chitobiase-like_1 30.6 87 0.0019 30.1 4.9 62 68-131 63-148 (311)
173 COG4981 Enoyl reductase domain 30.2 3.4E+02 0.0073 28.4 9.0 41 196-238 112-152 (717)
174 cd06594 GH31_glucosidase_YihQ 30.0 88 0.0019 30.0 4.9 52 191-242 22-90 (317)
175 TIGR02884 spore_pdaA delta-lac 29.9 1.9E+02 0.0042 26.0 6.9 51 154-218 49-99 (224)
176 PF05738 Cna_B: Cna protein B- 29.7 2E+02 0.0044 20.2 5.8 37 318-354 20-66 (70)
177 cd02742 GH20_hexosaminidase Be 29.5 1.1E+02 0.0023 29.2 5.3 31 66-96 65-101 (303)
178 cd06830 PLPDE_III_ADC Type III 29.3 1.1E+02 0.0024 30.4 5.6 56 191-248 168-232 (409)
179 PRK07188 nicotinate phosphorib 29.3 1.5E+02 0.0032 29.1 6.3 41 164-219 273-315 (352)
180 PF03644 Glyco_hydro_85: Glyco 28.9 1E+02 0.0022 29.7 5.0 94 77-176 46-142 (311)
181 cd00951 KDGDH 5-dehydro-4-deox 28.5 5E+02 0.011 24.3 12.4 89 66-179 14-105 (289)
182 TIGR00977 LeuA_rel 2-isopropyl 28.3 6.9E+02 0.015 25.9 14.0 122 75-218 83-208 (526)
183 PF05089 NAGLU: Alpha-N-acetyl 28.0 1.6E+02 0.0035 28.6 6.2 100 75-177 97-218 (333)
184 PLN02746 hydroxymethylglutaryl 27.7 5.5E+02 0.012 25.1 9.9 60 151-219 193-252 (347)
185 PRK15036 hydroxyisourate hydro 27.5 61 0.0013 27.2 2.9 21 2-22 32-53 (137)
186 KOG0622 Ornithine decarboxylas 27.5 6.5E+02 0.014 25.4 12.7 104 162-269 158-283 (448)
187 cd03858 M14_CP_N-E_like Carbox 27.3 45 0.00098 32.8 2.4 18 2-19 303-320 (374)
188 COG0646 MetH Methionine syntha 27.2 2.9E+02 0.0063 26.5 7.5 99 155-265 169-285 (311)
189 cd06603 GH31_GANC_GANAB_alpha 27.2 1.2E+02 0.0026 29.4 5.3 53 191-243 23-84 (339)
190 TIGR00674 dapA dihydrodipicoli 26.4 5.3E+02 0.012 24.0 11.7 58 66-134 12-69 (285)
191 COG1182 AcpD Acyl carrier prot 26.3 4.1E+02 0.0088 23.9 8.0 108 115-247 19-128 (202)
192 PRK05437 isopentenyl pyrophosp 25.9 5.9E+02 0.013 24.8 9.9 104 153-279 104-218 (352)
193 PF01060 DUF290: Transthyretin 25.8 1E+02 0.0022 23.0 3.6 16 318-333 32-47 (80)
194 cd06568 GH20_SpHex_like A subg 25.6 1.1E+02 0.0023 29.7 4.6 30 67-96 69-104 (329)
195 cd00950 DHDPS Dihydrodipicolin 25.5 5.5E+02 0.012 23.8 11.3 58 66-134 14-71 (284)
196 PRK04147 N-acetylneuraminate l 25.3 5.7E+02 0.012 24.0 11.8 90 66-179 17-110 (293)
197 PRK00110 hypothetical protein; 25.1 2.9E+02 0.0063 25.6 7.1 56 221-276 174-232 (245)
198 TIGR01033 DNA-binding regulato 25.0 2.6E+02 0.0056 25.8 6.8 55 222-276 177-234 (238)
199 TIGR02660 nifV_homocitr homoci 24.8 6.6E+02 0.014 24.5 11.3 56 152-218 139-195 (365)
200 cd00954 NAL N-Acetylneuraminic 24.7 4.7E+02 0.01 24.5 8.8 24 152-175 110-133 (288)
201 cd06828 PLPDE_III_DapDC Type I 24.6 4.4E+02 0.0095 25.4 8.9 27 191-219 151-178 (373)
202 cd06562 GH20_HexA_HexB-like Be 24.5 1.3E+02 0.0028 29.3 5.1 64 67-132 64-151 (348)
203 cd00945 Aldolase_Class_I Class 24.4 4.4E+02 0.0095 22.3 10.3 77 192-276 65-147 (201)
204 TIGR02962 hdxy_isourate hydrox 24.4 88 0.0019 25.3 3.2 22 2-23 6-28 (112)
205 cd06598 GH31_transferase_CtsZ 24.2 1.7E+02 0.0036 28.1 5.6 53 191-243 23-90 (317)
206 cd03457 intradiol_dioxygenase_ 24.1 51 0.0011 29.2 1.9 23 1-23 31-54 (188)
207 COG3804 Uncharacterized conser 24.0 1.3E+02 0.0029 28.6 4.6 49 39-93 82-131 (350)
208 PF07364 DUF1485: Protein of u 23.9 3.9E+02 0.0084 25.5 7.9 58 191-249 77-143 (292)
209 cd06808 PLPDE_III Type III Pyr 23.7 4.8E+02 0.01 22.5 9.4 60 157-219 93-153 (211)
210 cd06600 GH31_MGAM-like This fa 23.6 1.4E+02 0.0029 28.7 4.9 53 191-243 23-84 (317)
211 PRK08508 biotin synthase; Prov 23.4 4.5E+02 0.0098 24.5 8.4 75 154-241 74-155 (279)
212 cd06589 GH31 The enzymes of gl 23.2 1.9E+02 0.0041 26.8 5.7 76 191-274 23-109 (265)
213 TIGR02635 RhaI_grampos L-rhamn 23.0 7.3E+02 0.016 24.6 9.9 93 75-175 71-175 (378)
214 cd03867 M14_CPZ Peptidase M14- 23.0 2.3E+02 0.005 28.2 6.5 46 317-362 344-395 (395)
215 cd06597 GH31_transferase_CtsY 22.7 1.8E+02 0.0039 28.2 5.6 51 191-241 23-103 (340)
216 cd03868 M14_CPD_I The first ca 22.6 2.5E+02 0.0055 27.5 6.7 44 318-362 323-372 (372)
217 TIGR03527 selenium_YedF seleni 22.6 1.8E+02 0.0039 25.9 5.1 61 151-217 101-163 (194)
218 PRK09358 adenosine deaminase; 22.5 6.8E+02 0.015 23.8 14.4 45 197-241 154-200 (340)
219 COG0420 SbcD DNA repair exonuc 22.0 2.1E+02 0.0045 28.1 6.0 53 157-211 29-81 (390)
220 PRK13753 dihydropteroate synth 21.9 1.4E+02 0.0031 28.3 4.5 51 191-241 150-207 (279)
221 PF06953 ArsD: Arsenical resis 21.7 1.5E+02 0.0033 24.4 4.1 57 190-246 25-82 (123)
222 PF02784 Orn_Arg_deC_N: Pyrido 21.6 1.8E+02 0.0039 26.5 5.2 71 194-268 143-232 (251)
223 PF01055 Glyco_hydro_31: Glyco 21.6 2E+02 0.0044 28.7 5.9 53 191-243 42-103 (441)
224 PRK10812 putative DNAse; Provi 21.5 6.6E+02 0.014 23.3 9.8 50 195-244 77-132 (265)
225 PF11340 DUF3142: Protein of u 21.4 3.4E+02 0.0074 24.0 6.5 75 155-242 58-133 (181)
226 KOG3020 TatD-related DNase [Re 21.2 6.8E+02 0.015 23.9 8.9 64 205-268 71-146 (296)
227 cd06842 PLPDE_III_Y4yA_like Ty 21.0 6.2E+02 0.013 25.2 9.2 55 192-248 151-212 (423)
228 KOG2566 Beta-glucocerebrosidas 21.0 8.6E+02 0.019 24.4 16.5 182 85-285 192-410 (518)
229 COG0084 TatD Mg-dependent DNas 20.9 2.8E+02 0.0062 25.8 6.3 50 193-242 74-131 (256)
230 TIGR02082 metH 5-methyltetrahy 20.9 5.9E+02 0.013 29.4 9.8 47 191-242 147-199 (1178)
231 cd00952 CHBPH_aldolase Trans-o 20.9 7.3E+02 0.016 23.6 9.5 24 152-175 117-140 (309)
232 cd00840 MPP_Mre11_N Mre11 nucl 20.5 3.4E+02 0.0073 23.6 6.6 52 155-208 28-79 (223)
233 TIGR03006 pepcterm_polyde poly 20.4 3.5E+02 0.0075 25.3 6.8 71 155-239 28-107 (265)
234 PF04914 DltD_C: DltD C-termin 20.3 3.8E+02 0.0082 22.2 6.2 74 70-150 33-107 (130)
235 cd01822 Lysophospholipase_L1_l 20.0 5.1E+02 0.011 21.4 11.1 74 135-213 36-109 (177)
No 1
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=100.00 E-value=6.5e-71 Score=529.19 Aligned_cols=281 Identities=34% Similarity=0.630 Sum_probs=248.1
Q ss_pred eccCCCceEEeecCCCCCCh-hHHHHHHhcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeecCC
Q 036715 20 QVSKDFPLGSAIASTILGNL-PYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWEN 98 (362)
Q Consensus 20 ~~~~~f~fG~a~~~~~~~~~-~y~~~~~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~ 98 (362)
+.++.|.||||++...+.++ .|++++.++||.+|+||+|||..+||++|+|+|+.+|++++||+++||+||||+|+||.
T Consensus 5 ~~~~~f~~G~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~ 84 (320)
T PF00331_consen 5 AAKHKFPFGAAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLVWHS 84 (320)
T ss_dssp HHCTTTEEEEEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESS
T ss_pred HHhccCCEEEEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEEEcc
Confidence 46899999999998876654 89999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccccCC---ChHH---HHHHHHHHHHHHHHHcc--CceeEEEEeccccccc---------ccccccChHHHHHHH
Q 036715 99 PKYNPTWVRNL---TGFQ---LQSAVNSRIQSLMNKYK--EEFIHWDVSNEILHFD---------FYEQRLGPKAALHFF 161 (362)
Q Consensus 99 ~~~~P~W~~~~---~~~~---~~~~~~~~i~~vv~ry~--g~v~~WDV~NE~~~~~---------~~~~~lG~~~~~~af 161 (362)
+ +|+|+... ++++ +++.+.+||+++++||+ |+|.+|||||||++.+ .|.+.+|++|+..||
T Consensus 85 ~--~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF 162 (320)
T PF00331_consen 85 Q--TPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAF 162 (320)
T ss_dssp S--S-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHH
T ss_pred c--ccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHH
Confidence 4 99999876 4444 99999999999999999 8999999999999865 588999999999999
Q ss_pred HHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCC-CHHHHHHHHHHHHhCCCcEE
Q 036715 162 QTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVP-NLPLMRAIIDKMTTLKLPIW 240 (362)
Q Consensus 162 ~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p-~~~~~~~~L~~~a~~glpI~ 240 (362)
+.||+++|+++||||||++.. + .+...|+++|+.|+++|+||||||+|+|+... .+..+.+.|++|+++|+||+
T Consensus 163 ~~A~~~~P~a~L~~NDy~~~~-~----~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~~~~i~~~l~~~~~~Gl~i~ 237 (320)
T PF00331_consen 163 RAAREADPNAKLFYNDYNIES-P----AKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYPPEQIWNALDRFASLGLPIH 237 (320)
T ss_dssp HHHHHHHTTSEEEEEESSTTS-T----HHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSSHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHhCCCcEEEeccccccc-h----HHHHHHHHHHHHHHhCCCccceechhhccCCCCCHHHHHHHHHHHHHcCCceE
Confidence 999999999999999999853 3 46789999999999999999999999999652 36899999999999999999
Q ss_pred EeeeecCCCC------ChHHHHHHHHHHHHHHhcCC--CeeEEEEEeeecCCCCCc------ccccCCCCCcchHHHHHH
Q 036715 241 LTEVDISSKL------SKEKQAVYLEQVLREGFSHP--SVSGIMLWAALHPNGCYQ------MCLTDNNLQNLPAGDVVD 306 (362)
Q Consensus 241 iTE~dv~~~~------~~~~QA~~~~~~~~~~~s~p--~v~gi~~Wg~~d~~g~~~------~gL~d~d~~~KPa~~~~~ 306 (362)
|||+||.... .++.||+++++++++|++|| +|+||++||++|..+|.+ ++|||.|++|||||.++.
T Consensus 238 ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa~~~~~ 317 (320)
T PF00331_consen 238 ITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPAYDAIV 317 (320)
T ss_dssp EEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HHHHHHH
T ss_pred EEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHHHHHHH
Confidence 9999998742 16789999999999999999 999999999999988753 699999999999999987
Q ss_pred H
Q 036715 307 K 307 (362)
Q Consensus 307 ~ 307 (362)
+
T Consensus 318 ~ 318 (320)
T PF00331_consen 318 D 318 (320)
T ss_dssp H
T ss_pred h
Confidence 5
No 2
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-63 Score=459.33 Aligned_cols=282 Identities=29% Similarity=0.527 Sum_probs=235.9
Q ss_pred eccCCCceEEeecCCCC--CChhHHHHHHhcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeecC
Q 036715 20 QVSKDFPLGSAIASTIL--GNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWE 97 (362)
Q Consensus 20 ~~~~~f~fG~a~~~~~~--~~~~y~~~~~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~ 97 (362)
+...+.+|+..+..... +.+.|+ ...++||.+|+||+|||..++|++|+|||+.+|++++||++|||++|||+|+||
T Consensus 28 ~k~~~~~f~~~~aa~~~~~~~e~~~-~~~re~n~iTpenemKwe~i~p~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~ 106 (345)
T COG3693 28 AKLDDIPFAGLAAAGNKPSDSETYK-YYARECNQITPENEMKWEAIEPERGRFNFEAADAIANFARKHNMPLHGHTLVWH 106 (345)
T ss_pred hhccCcchHHHHhccCCcccchHHH-HHHhhhcccccccccccccccCCCCccCccchHHHHHHHHHcCCeeccceeeec
Confidence 34455566543332211 223343 347899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccC--CChHHHHHHHHHHHHHHHHHccCceeEEEEecccccc------ccccc-ccChHHHHHHHHHHHhhC
Q 036715 98 NPKYNPTWVRN--LTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHF------DFYEQ-RLGPKAALHFFQTAHQSD 168 (362)
Q Consensus 98 ~~~~~P~W~~~--~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~------~~~~~-~lG~~~~~~af~~Ar~ad 168 (362)
++ .|+|+.. ++++.+.+.+++||.+|++||+|++.+||||||+++. +.|.+ ..|+||++.+|+.||++|
T Consensus 107 ~q--~P~W~~~~e~~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~Aread 184 (345)
T COG3693 107 SQ--VPDWLFGDELSKEALAKMVEEHIKTVVGRYKGSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREAD 184 (345)
T ss_pred cc--CCchhhccccChHHHHHHHHHHHHHHHHhccCceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhC
Confidence 96 9999998 8899999999999999999999999999999999974 46777 778999999999999999
Q ss_pred CCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC--CCHHHHHHHHHHHHhCCCcEEEeeeec
Q 036715 169 PLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PNLPLMRAIIDKMTTLKLPIWLTEVDI 246 (362)
Q Consensus 169 P~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~--p~~~~~~~~L~~~a~~glpI~iTE~dv 246 (362)
|+|+|++|||++ +... +++..++++|+.|+++|+||||||+|+||+. |+...++..|.+++..|+||+|||+|+
T Consensus 185 P~AkL~~NDY~i-e~~~---~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~Gl~i~VTELD~ 260 (345)
T COG3693 185 PDAKLVINDYSI-EGNP---AKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLGLPIYVTELDM 260 (345)
T ss_pred CCceEEeecccc-cCCh---HHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHHHhhcCCCceEEEeee
Confidence 999999999995 4332 4678888999999999999999999999965 688899999999999999999999999
Q ss_pred CC--CCC--h----HHHHHHHHHHHHHHhcCCC-eeEEEEEeeecCCCC----------CcccccCCCCCcchHHHHHHH
Q 036715 247 SS--KLS--K----EKQAVYLEQVLREGFSHPS-VSGIMLWAALHPNGC----------YQMCLTDNNLQNLPAGDVVDK 307 (362)
Q Consensus 247 ~~--~~~--~----~~QA~~~~~~~~~~~s~p~-v~gi~~Wg~~d~~g~----------~~~gL~d~d~~~KPa~~~~~~ 307 (362)
+. +.+ + ..|+. ....+..+...|+ |++|++||+.|.+.| ..+.|+|.+++|||+|.++.+
T Consensus 261 ~~~~P~~~~p~~~~~~~~~-~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D~n~~pKPa~~aI~e 339 (345)
T COG3693 261 SDYTPDSGAPRLYLQKAAS-RAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFDDNYQPKPAYKAIAE 339 (345)
T ss_pred eccCCCCccHHHHHHHHHH-HHHHHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCcccCCCCCcchHHHHHHH
Confidence 86 211 1 12233 3444556666777 999999999887653 137899999999999999986
Q ss_pred HH
Q 036715 308 LL 309 (362)
Q Consensus 308 li 309 (362)
.+
T Consensus 340 ~l 341 (345)
T COG3693 340 VL 341 (345)
T ss_pred Hh
Confidence 54
No 3
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=100.00 E-value=1.1e-61 Score=451.90 Aligned_cols=242 Identities=35% Similarity=0.613 Sum_probs=223.9
Q ss_pred ccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEE
Q 036715 58 LKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWD 137 (362)
Q Consensus 58 ~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WD 137 (362)
|||+.+||++|+|||+.+|++++||+++||+++||+|+|+.+ .|+|+..++++++++++.+||+++++||+|+|..||
T Consensus 1 ~kW~~~ep~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~~--~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wd 78 (254)
T smart00633 1 MKWDSTEPSRGQFNFSGADAIVNFAKENGIKVRGHTLVWHSQ--TPDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWD 78 (254)
T ss_pred CCcccccCCCCccChHHHHHHHHHHHHCCCEEEEEEEeeccc--CCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 799999999999999999999999999999999999999984 999999888889999999999999999999999999
Q ss_pred Eeccccccc-------ccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccE
Q 036715 138 VSNEILHFD-------FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDG 210 (362)
Q Consensus 138 V~NE~~~~~-------~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDg 210 (362)
|||||++.+ +|.+.+|++|+..+|++||++||+++|++|||++.. +. .+...|+++++.|+++|+||||
T Consensus 79 V~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~-~~---~k~~~~~~~v~~l~~~g~~iDg 154 (254)
T smart00633 79 VVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEE-PN---AKRQAIYELVKKLKAKGVPIDG 154 (254)
T ss_pred EeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcC-cc---HHHHHHHHHHHHHHHCCCccce
Confidence 999998764 788999999999999999999999999999999753 32 3467899999999999999999
Q ss_pred EEeeccCCC--CCHHHHHHHHHHHHhCCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEeeecCCCCC-
Q 036715 211 IGLQGHFTV--PNLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAALHPNGCY- 287 (362)
Q Consensus 211 IG~q~H~~~--p~~~~~~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~g~~- 287 (362)
||+|+|+.. |+++.+.+.|++++++|+||+|||+|++...+++.||++++++++++++||+|.||++||++|..+|.
T Consensus 155 iGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~d~~~W~~ 234 (254)
T smart00633 155 IGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVTDKYSWLD 234 (254)
T ss_pred eeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCccCCcccC
Confidence 999999864 67889999999999999999999999997544589999999999999999999999999999988764
Q ss_pred --cccccCCCCCcchHHHHH
Q 036715 288 --QMCLTDNNLQNLPAGDVV 305 (362)
Q Consensus 288 --~~gL~d~d~~~KPa~~~~ 305 (362)
.++|+|.|++|||||+++
T Consensus 235 ~~~~~L~d~~~~~kpa~~~~ 254 (254)
T smart00633 235 GGAPLLFDANYQPKPAYWAV 254 (254)
T ss_pred CCCceeECCCCCCChhhhcC
Confidence 468999999999999864
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.76 E-value=5e-16 Score=148.58 Aligned_cols=248 Identities=20% Similarity=0.251 Sum_probs=175.7
Q ss_pred HHHH-hcCCeeeeCCCccccccccCC-CcccchhHHHHHHHHHhcCcEEEEEEee----cCCCC--CCC-ccccCCChHH
Q 036715 43 KWFV-KRFNAAVFENELKWYATEAEQ-GKVNYTVADQMMEFVRANKLIVRGHNIF----WENPK--YNP-TWVRNLTGFQ 113 (362)
Q Consensus 43 ~~~~-~~Fn~~t~en~~kW~~~Ep~~-G~~~~~~~D~~v~~a~~~gi~v~GH~L~----W~~~~--~~P-~W~~~~~~~~ 113 (362)
++++ ..+|+++++ + | ..|.. |..+.+..-++.+-++++||+|.- .+. |.++. ..| .|.. ++.++
T Consensus 31 ~ilk~~G~N~vRlR--v-w--v~P~~~g~~~~~~~~~~akrak~~Gm~vll-dfHYSD~WaDPg~Q~~P~aW~~-~~~~~ 103 (332)
T PF07745_consen 31 QILKDHGVNAVRLR--V-W--VNPYDGGYNDLEDVIALAKRAKAAGMKVLL-DFHYSDFWADPGKQNKPAAWAN-LSFDQ 103 (332)
T ss_dssp HHHHHTT--EEEEE--E----SS-TTTTTTSHHHHHHHHHHHHHTT-EEEE-EE-SSSS--BTTB-B--TTCTS-SSHHH
T ss_pred HHHHhcCCCeEEEE--e-c--cCCcccccCCHHHHHHHHHHHHHCCCeEEE-eecccCCCCCCCCCCCCccCCC-CCHHH
Confidence 4443 689999998 4 5 56777 889999999999999999999872 222 32221 234 4553 58899
Q ss_pred HHHHHHHHHHHHHHHcc--C-ceeEEEEecccccccccccccCh------HHHHHHHHHHHhhCCCceEEeecCCCccCC
Q 036715 114 LQSAVNSRIQSLMNKYK--E-EFIHWDVSNEILHFDFYEQRLGP------KAALHFFQTAHQSDPLATLFMNEYNVVETC 184 (362)
Q Consensus 114 ~~~~~~~~i~~vv~ry~--g-~v~~WDV~NE~~~~~~~~~~lG~------~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~ 184 (362)
+.+++.+|.+.+++.++ | .+..+.|-||...+-.|...-.. .++..+++++|+.+|++++.+. ++.+
T Consensus 104 l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH----~~~~ 179 (332)
T PF07745_consen 104 LAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLH----LANG 179 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEE----ES-T
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEE----ECCC
Confidence 99999999999999887 3 57889999998766556322222 3577889999999999999998 3444
Q ss_pred CccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC-CCHHHHHHHHHHHH-hCCCcEEEeeeecCCC-------------
Q 036715 185 SDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV-PNLPLMRAIIDKMT-TLKLPIWLTEVDISSK------------- 249 (362)
Q Consensus 185 ~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~-p~~~~~~~~L~~~a-~~glpI~iTE~dv~~~------------- 249 (362)
.+ ...+..+.+.|.++|+.+|.||+..|..- ..+..++..|+.++ ++|+||.|+|.+++..
T Consensus 180 ~~----~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~ 255 (332)
T PF07745_consen 180 GD----NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGA 255 (332)
T ss_dssp TS----HHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSS
T ss_pred Cc----hHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCcc
Confidence 33 24566667889999999999999888643 46888999999985 6899999999998752
Q ss_pred --------CChHHHHHHHHHHHHHHhcCC--CeeEEEEEee-ec----------CCCCCcccccCCCCCcchHHHHH
Q 036715 250 --------LSKEKQAVYLEQVLREGFSHP--SVSGIMLWAA-LH----------PNGCYQMCLTDNNLQNLPAGDVV 305 (362)
Q Consensus 250 --------~~~~~QA~~~~~~~~~~~s~p--~v~gi~~Wg~-~d----------~~g~~~~gL~d~d~~~KPa~~~~ 305 (362)
.+.+-|++++++++..+.++| .+.||++|.. |- +..|.+.+|||.++++.|+.+++
T Consensus 256 ~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~~lFD~~g~~l~sl~~f 332 (332)
T PF07745_consen 256 TSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWIPVENGWDWGGGSSWDNQALFDFNGNALPSLDVF 332 (332)
T ss_dssp STGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBGSSB-TTSBB-GGGGHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccccCCcccccCCCCCccccccCCCCCCCchHhhcC
Confidence 145789999999999999986 6999999975 32 12366889999999999998775
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.58 E-value=1.5e-13 Score=128.92 Aligned_cols=244 Identities=14% Similarity=0.129 Sum_probs=152.0
Q ss_pred ecCCCCcCCCCeEEEEeccCCCceEEeecCC--CCCChhHHHHHHhcCCeeeeCCCccccccc-cCCCc-c---cchhHH
Q 036715 4 TNGHGDILQGAVIKIKQVSKDFPLGSAIAST--ILGNLPYQKWFVKRFNAAVFENELKWYATE-AEQGK-V---NYTVAD 76 (362)
Q Consensus 4 ~d~~g~p~~~a~v~v~~~~~~f~fG~a~~~~--~~~~~~y~~~~~~~Fn~~t~en~~kW~~~E-p~~G~-~---~~~~~D 76 (362)
||.+|+|| -.+|...+.. ...++.++.+-..+||.++++ +.|..++ +.++. + -+...|
T Consensus 1 ~~~~G~~v-------------~~~G~n~~w~~~~~~~~~~~~~~~~G~n~VRi~--v~~~~~~~~~~~~~~~~~~~~~ld 65 (281)
T PF00150_consen 1 VDQNGKPV-------------NWRGFNTHWYNPSITEADFDQLKALGFNTVRIP--VGWEAYQEPNPGYNYDETYLARLD 65 (281)
T ss_dssp ECTTSEBE-------------EEEEEEETTSGGGSHHHHHHHHHHTTESEEEEE--EESTSTSTTSTTTSBTHHHHHHHH
T ss_pred CCCCCCeE-------------EeeeeecccCCCCCHHHHHHHHHHCCCCEEEeC--CCHHHhcCCCCCccccHHHHHHHH
Confidence 58888877 2445555421 112223333445689999999 9997666 55543 2 356789
Q ss_pred HHHHHHHhcCcEEEEEEeecCCCCCCCccccCC----ChHHHHHHHHHHHHHHHHHccC--ceeEEEEecccccccc---
Q 036715 77 QMMEFVRANKLIVRGHNIFWENPKYNPTWVRNL----TGFQLQSAVNSRIQSLMNKYKE--EFIHWDVSNEILHFDF--- 147 (362)
Q Consensus 77 ~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~----~~~~~~~~~~~~i~~vv~ry~g--~v~~WDV~NE~~~~~~--- 147 (362)
++|++|+++||.|. |.+|. .|.|...- ......+.+.++++.+++||++ .|..||++|||.....
T Consensus 66 ~~v~~a~~~gi~vi---ld~h~---~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~ 139 (281)
T PF00150_consen 66 RIVDAAQAYGIYVI---LDLHN---APGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDAN 139 (281)
T ss_dssp HHHHHHHHTT-EEE---EEEEE---STTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTT
T ss_pred HHHHHHHhCCCeEE---EEecc---CccccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccc
Confidence 99999999999984 44443 37784321 2344667788899999999965 6889999999986432
Q ss_pred cccccCh---HHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCC----
Q 036715 148 YEQRLGP---KAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVP---- 220 (362)
Q Consensus 148 ~~~~lG~---~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p---- 220 (362)
|...... +++..+++++|+++|+..+++.+.+. ... .... ...+-......+.+.+|.+....
T Consensus 140 w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~-~~~------~~~~---~~~~P~~~~~~~~~~~H~Y~~~~~~~~ 209 (281)
T PF00150_consen 140 WNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGW-GAD------PDGA---AADNPNDADNNDVYSFHFYDPYDFSDQ 209 (281)
T ss_dssp TSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHH-HTB------HHHH---HHHSTTTTTTSEEEEEEEETTTCHHTT
T ss_pred cccccchhhhhHHHHHHHHHHhcCCcceeecCCCcc-ccc------cchh---hhcCcccccCceeEEeeEeCCCCcCCc
Confidence 4111112 56788999999999999999987331 110 1110 01110112356677777665321
Q ss_pred -C----------HHHHHHHHHHHHhCCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEeee
Q 036715 221 -N----------LPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAAL 281 (362)
Q Consensus 221 -~----------~~~~~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~ 281 (362)
. ...+...+..+...|+||+++|+++.... .....++...++..+.++ . .|.++|.+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~pv~~gE~G~~~~~-~~~~~~~~~~~~~~~~~~-~-~g~~~W~~~ 278 (281)
T PF00150_consen 210 WNPGNWGDASALESSFRAALNWAKKNGKPVVVGEFGWSNND-GNGSTDYADAWLDYLEQN-G-IGWIYWSWK 278 (281)
T ss_dssp TSTCSHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTT-SCHHHHHHHHHHHHHHHT-T-CEEEECEES
T ss_pred cccccchhhhHHHHHHHHHHHHHHHcCCeEEEeCcCCcCCC-CCcCHHHHHHHHHHHHHC-C-CeEEEEecC
Confidence 1 12355666666788999999999998532 212333334445555554 3 477888874
No 6
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.58 E-value=2.8e-13 Score=137.52 Aligned_cols=280 Identities=15% Similarity=0.109 Sum_probs=148.9
Q ss_pred ChhHHHHHH-----hcCCeeeeCCCc--ccccccc--CCCc--ccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccc
Q 036715 38 NLPYQKWFV-----KRFNAAVFENEL--KWYATEA--EQGK--VNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWV 106 (362)
Q Consensus 38 ~~~y~~~~~-----~~Fn~~t~en~~--kW~~~Ep--~~G~--~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~ 106 (362)
++.+++.+. -+|..+++.|-| .+..... ..|. |||+..|++++++.++||+..-- |. ..|.++
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~ve-l~-----f~p~~~ 111 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVE-LG-----FMPMAL 111 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEE-E------SB-GGG
T ss_pred hHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEE-EE-----echhhh
Confidence 345554442 369999998877 5544332 2332 99999999999999999988422 21 244433
Q ss_pred cC-----------CChHHHHHHHHHHHHHHHHHccC-----cee--EEEEecccccccccccccChHH---HHHHHHHHH
Q 036715 107 RN-----------LTGFQLQSAVNSRIQSLMNKYKE-----EFI--HWDVSNEILHFDFYEQRLGPKA---ALHFFQTAH 165 (362)
Q Consensus 107 ~~-----------~~~~~~~~~~~~~i~~vv~ry~g-----~v~--~WDV~NE~~~~~~~~~~lG~~~---~~~af~~Ar 165 (362)
.+ .+|+...+.|.+.|+++++||.+ .|. .|||||||....+|....-.+| .+.+++++|
T Consensus 112 ~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK 191 (486)
T PF01229_consen 112 ASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIK 191 (486)
T ss_dssp BSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHH
T ss_pred cCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 21 23444456666666666665543 244 6799999987776654333444 567889999
Q ss_pred hhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC-----C--------CHH----HHHHH
Q 036715 166 QSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV-----P--------NLP----LMRAI 228 (362)
Q Consensus 166 ~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~-----p--------~~~----~~~~~ 228 (362)
+++|++++.--.+.. . ...-..++++.+.++++|+|-|.+|.+-.. + ... .+...
T Consensus 192 ~~~p~~~vGGp~~~~-~-------~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (486)
T PF01229_consen 192 AVDPELKVGGPAFAW-A-------YDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFPELKET 263 (486)
T ss_dssp HH-TTSEEEEEEEET-T--------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHHHHHHH
T ss_pred HhCCCCcccCccccc-c-------HHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhhhHHHHHHHHHHH
Confidence 999999964321111 0 012233445667788899999999876532 1 111 12222
Q ss_pred HHHHH---hCCCcEEEeeeecCCCC-----ChHHHHHHHHH-HHHHHhcCCCeeEEEEEeeecCC---C------CCccc
Q 036715 229 IDKMT---TLKLPIWLTEVDISSKL-----SKEKQAVYLEQ-VLREGFSHPSVSGIMLWAALHPN---G------CYQMC 290 (362)
Q Consensus 229 L~~~a---~~glpI~iTE~dv~~~~-----~~~~QA~~~~~-~~~~~~s~p~v~gi~~Wg~~d~~---g------~~~~g 290 (362)
.+.+. ..++|+++||...+... +...+|.++-+ ++... .-.+.++..|.+.|-- + ...+|
T Consensus 264 ~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~--~~~l~~~sywt~sD~Fee~~~~~~pf~ggfG 341 (486)
T PF01229_consen 264 RPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAKNLLSND--GAFLDSFSYWTFSDRFEENGTPRKPFHGGFG 341 (486)
T ss_dssp HHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHG--GGT-SEEEES-SBS---TTSS-SSSSSS-S-
T ss_pred HHHHhhccCCCCceeecccccccCCCcchhccccchhhHHHHHHHhh--hhhhhhhhccchhhhhhccCCCCCceecchh
Confidence 22232 33678999998886531 22356666544 33221 1247899999986521 1 23689
Q ss_pred ccCCCCCcchHHHHHHHHH--H-h--hcCCCceeeeCCCcEEEEeeEE
Q 036715 291 LTDNNLQNLPAGDVVDKLL--K-E--CQTGEVTGHTDAHGSYSFYGFL 333 (362)
Q Consensus 291 L~d~d~~~KPa~~~~~~li--~-e--w~t~~~~~~td~~G~~~~~gf~ 333 (362)
|+..++-+||+|.++.-|= . + ..+.....+++.+|.+.+-.+.
T Consensus 342 Llt~~gI~KPa~~A~~~L~~lg~~~~~~~~~~~vt~~~~~~~~il~~n 389 (486)
T PF01229_consen 342 LLTKLGIPKPAYYAFQLLNKLGDRLVAKGDHYIVTSKDDGSVQILVWN 389 (486)
T ss_dssp SEECCCEE-HHHHHHHHHTT--SEEEEEETTEEEEE-TTS-EEEEEEE
T ss_pred hhhccCCCchHHHHHHHHHhhCceeEecCCCceeEEcCCCeEEEEEec
Confidence 9999999999999875442 1 1 2222223345567777776666
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.55 E-value=6.1e-13 Score=130.83 Aligned_cols=249 Identities=16% Similarity=0.208 Sum_probs=141.9
Q ss_pred HHhcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC----------------
Q 036715 45 FVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN---------------- 108 (362)
Q Consensus 45 ~~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~---------------- 108 (362)
-..+||.+++. .+.|..+||++|+|||+..|++++.|.++||+|-- .... ...|.|+..
T Consensus 20 ~~~G~n~vri~-~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL---~~~~-~~~P~Wl~~~~Pe~~~~~~~g~~~~ 94 (374)
T PF02449_consen 20 KEAGFNTVRIG-EFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVIL---GTPT-AAPPAWLYDKYPEILPVDADGRRRG 94 (374)
T ss_dssp HHHT-SEEEE--CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEE---EECT-TTS-HHHHCCSGCCC-B-TTTSBEE
T ss_pred HHcCCCEEEEE-EechhhccCCCCeeecHHHHHHHHHHHhccCeEEE---Eecc-cccccchhhhcccccccCCCCCcCc
Confidence 35699999962 49999999999999999999999999999999863 3322 357888753
Q ss_pred --------CChHHHHHHHHHHHHHHHHHccC--ceeEEEEeccccc-c------------------------------cc
Q 036715 109 --------LTGFQLQSAVNSRIQSLMNKYKE--EFIHWDVSNEILH-F------------------------------DF 147 (362)
Q Consensus 109 --------~~~~~~~~~~~~~i~~vv~ry~g--~v~~WDV~NE~~~-~------------------------------~~ 147 (362)
.+.+..++.+.+++++++.||++ .|..|+|.||+-. . .+
T Consensus 95 ~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ 174 (374)
T PF02449_consen 95 FGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYGTIEALNRAWGTAF 174 (374)
T ss_dssp CCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTG
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCc
Confidence 12356788999999999999997 4899999999743 1 12
Q ss_pred -------ccccc-----C----h---------------HHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHH
Q 036715 148 -------YEQRL-----G----P---------------KAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYIS 196 (362)
Q Consensus 148 -------~~~~l-----G----~---------------~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~ 196 (362)
|.+.. + + +++....+.+|+.+|+..+..|-+...-. ..++.+
T Consensus 175 ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~-------~~d~~~ 247 (374)
T PF02449_consen 175 WSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFN-------GIDYFK 247 (374)
T ss_dssp GG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT----------SS-HHH
T ss_pred ccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccC-------cCCHHH
Confidence 22211 0 0 22344567889999999998886553000 112322
Q ss_pred HHHHHHHcCCcccEEEeeccCC-----C---CCHHHHHHHHHHHHhCCCcEEEeeeecCCC-C---ChHHHHHHHHHHHH
Q 036715 197 RLRELRRSGVSTDGIGLQGHFT-----V---PNLPLMRAIIDKMTTLKLPIWLTEVDISSK-L---SKEKQAVYLEQVLR 264 (362)
Q Consensus 197 ~i~~l~~~G~~iDgIG~q~H~~-----~---p~~~~~~~~L~~~a~~glpI~iTE~dv~~~-~---~~~~QA~~~~~~~~ 264 (362)
+ .-.+|.+|...+.. . +....+..-|-|-.+.|+|.|++|.-.... + ........++...-
T Consensus 248 ~-------a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~~ 320 (374)
T PF02449_consen 248 W-------AKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWSW 320 (374)
T ss_dssp H-------GGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTHHHHHHH
T ss_pred H-------HhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHHHHHHH
Confidence 1 12578888887765 1 111122222222225799999999966521 1 11111123333333
Q ss_pred HHhcCCCeeEEEEEeeecC-CC--CCcccccCCCC-CcchHHHHHHHHHHhhc
Q 036715 265 EGFSHPSVSGIMLWAALHP-NG--CYQMCLTDNNL-QNLPAGDVVDKLLKECQ 313 (362)
Q Consensus 265 ~~~s~p~v~gi~~Wg~~d~-~g--~~~~gL~d~d~-~~KPa~~~~~~li~ew~ 313 (362)
.+++| +..||.+|..... .| ....||++.|+ ++.+.|..+.++-++..
T Consensus 321 ~~~A~-Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~~~~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 321 QAIAH-GADGILFWQWRQSRFGAEQFHGGLVDHDGREPTRRYREVAQLGRELK 372 (374)
T ss_dssp HHHHT-T-S-EEEC-SB--SSSTTTTS--SB-TTS--B-HHHHHHHHHHHHHH
T ss_pred HHHHH-hCCeeEeeeccCCCCCchhhhcccCCccCCCCCcHHHHHHHHHHHHh
Confidence 44555 7889999987543 23 24789999999 99999999999977643
No 8
>TIGR03356 BGL beta-galactosidase.
Probab=99.50 E-value=4.2e-12 Score=126.72 Aligned_cols=243 Identities=15% Similarity=0.142 Sum_probs=159.2
Q ss_pred hcCCeeeeCCCccccccccC-CCccc---chhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC---CChHHHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAE-QGKVN---YTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN---LTGFQLQSAVN 119 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~-~G~~~---~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~---~~~~~~~~~~~ 119 (362)
-.||..++. +.|..++|+ +|.+| ++..|++++.|+++||.+.- +| .|- .+|.|+.. +..++..+.+.
T Consensus 66 ~G~~~~R~s--i~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~piv-tL-~Hf--d~P~~l~~~gGw~~~~~~~~f~ 139 (427)
T TIGR03356 66 LGVDAYRFS--IAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFV-TL-YHW--DLPQALEDRGGWLNRDTAEWFA 139 (427)
T ss_pred cCCCeEEcc--cchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEE-ee-ccC--CccHHHHhcCCCCChHHHHHHH
Confidence 589999998 999999999 78888 46789999999999998863 33 232 27888752 33456778999
Q ss_pred HHHHHHHHHccCceeEEEEecccccccc-------cccc-cC-h-HH---------HHHHHHHHHhhCCCceEEeecCCC
Q 036715 120 SRIQSLMNKYKEEFIHWDVSNEILHFDF-------YEQR-LG-P-KA---------ALHFFQTAHQSDPLATLFMNEYNV 180 (362)
Q Consensus 120 ~~i~~vv~ry~g~v~~WDV~NE~~~~~~-------~~~~-lG-~-~~---------~~~af~~Ar~adP~a~L~~Ndy~~ 180 (362)
+|++.+++||+++|+.|..+|||..... +.+. .. . -| -+.|+++.|+..|++++-+.-...
T Consensus 140 ~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~ 219 (427)
T TIGR03356 140 EYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLT 219 (427)
T ss_pred HHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 9999999999999999999999974321 1110 11 1 11 246788889999998876643221
Q ss_pred ccCCCccch--hH-----HHHH-H-H------------HHH--------------HHHcCCcccEEEeeccCCC------
Q 036715 181 VETCSDVNS--MV-----DSYI-S-R------------LRE--------------LRRSGVSTDGIGLQGHFTV------ 219 (362)
Q Consensus 181 ~~~~~~~~~--~~-----~~y~-~-~------------i~~--------------l~~~G~~iDgIG~q~H~~~------ 219 (362)
.-.|..... .. ..+. . + +++ ++ +| .+|-||++.+...
T Consensus 220 ~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~p~~~~~d~~~l-~~-~~DFiGiNyY~~~~v~~~~ 297 (427)
T TIGR03356 220 PVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGDAPFVQDGDLETI-AQ-PLDFLGINYYTRSVVAADP 297 (427)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhccCCCCCHHHHHHh-cC-CCCEEEEeccccceeccCC
Confidence 111211000 00 0010 0 0 011 11 22 5699999876421
Q ss_pred -------------C--------CHHHHHHHHHHH-HhCCC-cEEEeeeecCCC-------CChHHHHHHHHHHHHHHh--
Q 036715 220 -------------P--------NLPLMRAIIDKM-TTLKL-PIWLTEVDISSK-------LSKEKQAVYLEQVLREGF-- 267 (362)
Q Consensus 220 -------------p--------~~~~~~~~L~~~-a~~gl-pI~iTE~dv~~~-------~~~~~QA~~~~~~~~~~~-- 267 (362)
+ .+..|+..|..+ .+.++ ||.|||.++... ..+..+.+|+++.+..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~A 377 (427)
T TIGR03356 298 GTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARA 377 (427)
T ss_pred CCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHH
Confidence 1 145689999887 46787 799999999742 124567777777665443
Q ss_pred -cC-CCeeEEEEEeeecCC----C-CCcccccCCCCC
Q 036715 268 -SH-PSVSGIMLWAALHPN----G-CYQMCLTDNNLQ 297 (362)
Q Consensus 268 -s~-p~v~gi~~Wg~~d~~----g-~~~~gL~d~d~~ 297 (362)
+. =.|.|.+.|.+.|.- | ...+||+--|+.
T Consensus 378 i~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~ 414 (427)
T TIGR03356 378 IEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYE 414 (427)
T ss_pred HHCCCCEEEEEecccccccchhcccccccceEEECCC
Confidence 22 248999999998753 3 236888765544
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.37 E-value=3e-11 Score=121.83 Aligned_cols=257 Identities=14% Similarity=0.152 Sum_probs=160.9
Q ss_pred hcCCeeeeCCCccccccccC--CCcccch---hHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC---CChHHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAE--QGKVNYT---VADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN---LTGFQLQSAV 118 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~--~G~~~~~---~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~---~~~~~~~~~~ 118 (362)
-.+|.-++. +.|..++|. +|.+|-+ -.+++++-|+++||+..- || +|- .+|.|+.. +..++..+.+
T Consensus 70 lg~~~yRfs--i~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~v-tL-~H~--~~P~~l~~~ggw~~~~~~~~F 143 (455)
T PF00232_consen 70 LGVNAYRFS--ISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIV-TL-YHF--DLPLWLEDYGGWLNRETVDWF 143 (455)
T ss_dssp HT-SEEEEE----HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEE-EE-ESS----BHHHHHHTGGGSTHHHHHH
T ss_pred hccceeeee--cchhheeecccccccCHhHhhhhHHHHHHHHhhccceee-ee-eec--ccccceeecccccCHHHHHHH
Confidence 369999998 999999999 6999944 468999999999999874 33 332 28999864 2345678899
Q ss_pred HHHHHHHHHHccCceeEEEEeccccccc-------cccccc-C-hH-H---------HHHHHHHHHhhCCCceEEee-cC
Q 036715 119 NSRIQSLMNKYKEEFIHWDVSNEILHFD-------FYEQRL-G-PK-A---------ALHFFQTAHQSDPLATLFMN-EY 178 (362)
Q Consensus 119 ~~~i~~vv~ry~g~v~~WDV~NE~~~~~-------~~~~~l-G-~~-~---------~~~af~~Ar~adP~a~L~~N-dy 178 (362)
.+|++.+++||+++|+.|=..|||.... .+.+.. . .. + -+.|+++.|+..|++++-+. .+
T Consensus 144 ~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~ 223 (455)
T PF00232_consen 144 ARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNF 223 (455)
T ss_dssp HHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEE
T ss_pred HHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccc
Confidence 9999999999999999999999997421 111110 0 11 1 24678899999999998552 22
Q ss_pred CCccCCCccchhH-----HHHHHH-----------------HH-HHHHc--------------CCcccEEEeeccCCC--
Q 036715 179 NVVETCSDVNSMV-----DSYISR-----------------LR-ELRRS--------------GVSTDGIGLQGHFTV-- 219 (362)
Q Consensus 179 ~~~~~~~~~~~~~-----~~y~~~-----------------i~-~l~~~--------------G~~iDgIG~q~H~~~-- 219 (362)
... .|.+..... ..+.++ ++ .+..+ ..++|-||+..+...
T Consensus 224 ~~~-~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v 302 (455)
T PF00232_consen 224 SPF-YPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYV 302 (455)
T ss_dssp EEE-EESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEE
T ss_pred ccc-CCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceee
Confidence 211 111111000 011110 01 11112 236999999876320
Q ss_pred ---C-------------------------------CHHHHHHHHHHH-HhCC-CcEEEeeeecCCCC-------ChHHHH
Q 036715 220 ---P-------------------------------NLPLMRAIIDKM-TTLK-LPIWLTEVDISSKL-------SKEKQA 256 (362)
Q Consensus 220 ---p-------------------------------~~~~~~~~L~~~-a~~g-lpI~iTE~dv~~~~-------~~~~QA 256 (362)
+ .+..|+..|..+ .+.+ +||.|||.++.... .+..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri 382 (455)
T PF00232_consen 303 RADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRI 382 (455)
T ss_dssp EESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHH
T ss_pred ccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhccccCCCcEEEecccccccccccccCcCcHHHH
Confidence 0 156789999998 4667 99999999998642 135566
Q ss_pred HHHHHHH----HHHhcCCCeeEEEEEeeecCCCC-----CcccccCCC------CCcchHHHHHHHHHH
Q 036715 257 VYLEQVL----REGFSHPSVSGIMLWAALHPNGC-----YQMCLTDNN------LQNLPAGDVVDKLLK 310 (362)
Q Consensus 257 ~~~~~~~----~~~~s~p~v~gi~~Wg~~d~~g~-----~~~gL~d~d------~~~KPa~~~~~~li~ 310 (362)
+|+++.+ ++...--.|.|.+.|.+.|.--| ..+||+.-| .+||+++..++++|+
T Consensus 383 ~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~ 451 (455)
T PF00232_consen 383 DYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIR 451 (455)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHH
Confidence 6665544 44433446999999999876432 368888777 679999999999996
No 10
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=99.34 E-value=9e-11 Score=108.49 Aligned_cols=166 Identities=22% Similarity=0.168 Sum_probs=112.3
Q ss_pred cCceeEEEEecccccccccccccCh-HHHHHHHHHHHh-hCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHH---c
Q 036715 130 KEEFIHWDVSNEILHFDFYEQRLGP-KAALHFFQTAHQ-SDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRR---S 204 (362)
Q Consensus 130 ~g~v~~WDV~NE~~~~~~~~~~lG~-~~~~~af~~Ar~-adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~---~ 204 (362)
++.+.++-.+|||+... ..-+.+ ++++.+-+.... .++.++|.--....... +.. ....+ ++++++ .
T Consensus 63 ~~~~~~ll~fNEPD~~~--qsn~~p~~aa~~w~~~~~~~~~~~~~l~sPa~~~~~~-~~~--~g~~W---l~~F~~~~~~ 134 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG--QSNMSPEEAAALWKQYMNPLRSPGVKLGSPAVAFTNG-GTP--GGLDW---LSQFLSACAR 134 (239)
T ss_pred ccCccceeeecCCCCCC--CCCCCHHHHHHHHHHHHhHhhcCCcEEECCeecccCC-CCC--CccHH---HHHHHHhccc
Confidence 66799999999998643 223333 443333332222 14788887554422111 000 01122 333333 4
Q ss_pred CCcccEEEeeccCCCCCHHHHHHHHHHH-HhCCCcEEEeeeecC---CCCChHHHHHHHHHHHHHHhcCCCeeEEEEEee
Q 036715 205 GVSTDGIGLQGHFTVPNLPLMRAIIDKM-TTLKLPIWLTEVDIS---SKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAA 280 (362)
Q Consensus 205 G~~iDgIG~q~H~~~p~~~~~~~~L~~~-a~~glpI~iTE~dv~---~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~ 280 (362)
|..+|.|.+|.+ ..++..+...|+.+ ..+|+||||||++.. ...++++|++++++++..+-+.|.|++..|+++
T Consensus 135 ~~~~D~iavH~Y--~~~~~~~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~~~VeryawF~~ 212 (239)
T PF11790_consen 135 GCRVDFIAVHWY--GGDADDFKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQPYVERYAWFGF 212 (239)
T ss_pred CCCccEEEEecC--CcCHHHHHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEeccc
Confidence 779999999888 33466788888887 678999999999974 234688999999999999989999999999995
Q ss_pred ecCC-C-CCcccccCCCCCcchHHHHH
Q 036715 281 LHPN-G-CYQMCLTDNNLQNLPAGDVV 305 (362)
Q Consensus 281 ~d~~-g-~~~~gL~d~d~~~KPa~~~~ 305 (362)
.... + .....|++.++++.|++..+
T Consensus 213 ~~~~~~~~~~~~L~~~~G~lt~lG~~Y 239 (239)
T PF11790_consen 213 MNDGSGVNPNSALLDADGSLTPLGKAY 239 (239)
T ss_pred ccccCCCccccccccCCCCcChhhhhC
Confidence 4332 2 34577889899999988753
No 11
>PLN02998 beta-glucosidase
Probab=99.33 E-value=4.6e-10 Score=113.71 Aligned_cols=255 Identities=13% Similarity=0.182 Sum_probs=161.7
Q ss_pred cCCeeeeCCCccccccccC-CCcccchh---HHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC----CChHHHHHHHH
Q 036715 48 RFNAAVFENELKWYATEAE-QGKVNYTV---ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN----LTGFQLQSAVN 119 (362)
Q Consensus 48 ~Fn~~t~en~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~----~~~~~~~~~~~ 119 (362)
.+|.-++. +.|..++|+ .|.+|-+. .+++++-|.++||+..- || +|= .+|.|+.. +...+..+.+.
T Consensus 95 G~~~YRfS--IsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~V-TL-~H~--dlP~~L~~~yGGW~n~~~v~~F~ 168 (497)
T PLN02998 95 GLEAYRFS--ISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHV-TL-HHF--DLPQALEDEYGGWLSQEIVRDFT 168 (497)
T ss_pred CCCeEEee--ccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEE-Ee-cCC--CCCHHHHHhhCCcCCchHHHHHH
Confidence 68999988 999999996 56666553 57999999999998763 33 333 28999854 23456788999
Q ss_pred HHHHHHHHHccCceeEEEEecccccccc-------ccccc-----------Ch----HH---------HHHHHHHHHhh-
Q 036715 120 SRIQSLMNKYKEEFIHWDVSNEILHFDF-------YEQRL-----------GP----KA---------ALHFFQTAHQS- 167 (362)
Q Consensus 120 ~~i~~vv~ry~g~v~~WDV~NE~~~~~~-------~~~~l-----------G~----~~---------~~~af~~Ar~a- 167 (362)
+|++.+++||++||+.|=-.|||..... +.+.. |. -| -+.|+++.|+.
T Consensus 169 ~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~ 248 (497)
T PLN02998 169 AYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQY 248 (497)
T ss_pred HHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999974321 11100 00 11 13466777775
Q ss_pred --CCCceE--EeecCCCccCCC-----ccch--hHHHHH-----H---------HHHHHHHc-------------CCccc
Q 036715 168 --DPLATL--FMNEYNVVETCS-----DVNS--MVDSYI-----S---------RLRELRRS-------------GVSTD 209 (362)
Q Consensus 168 --dP~a~L--~~Ndy~~~~~~~-----~~~~--~~~~y~-----~---------~i~~l~~~-------------G~~iD 209 (362)
.|+.++ .+|. ... .|. |..+ ....+. + .+++.+.. ..++|
T Consensus 249 ~~~~~g~IGi~~~~-~~~-~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~D 326 (497)
T PLN02998 249 KYKQHGSVGISVYT-YGA-VPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFD 326 (497)
T ss_pred ccCCCCcEEEEEeC-Cee-ecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCC
Confidence 666555 3332 111 121 1100 000010 0 00111100 12569
Q ss_pred EEEeeccCCC----------C---------------------------CHHHHHHHHHHH-HhCCC-cEEEeeeecCCC-
Q 036715 210 GIGLQGHFTV----------P---------------------------NLPLMRAIIDKM-TTLKL-PIWLTEVDISSK- 249 (362)
Q Consensus 210 gIG~q~H~~~----------p---------------------------~~~~~~~~L~~~-a~~gl-pI~iTE~dv~~~- 249 (362)
=||++-+... + .+..|+..|..+ ...++ ||.|||-++...
T Consensus 327 FlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~ 406 (497)
T PLN02998 327 FVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKETYGNPPVYILENGQMTPH 406 (497)
T ss_pred EEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC
Confidence 8998744210 0 134688888887 46788 699999999753
Q ss_pred ---CChHHHHHHHHHHHHHHh---c-CCCeeEEEEEeeecCC----CC-CcccccCCCCC-------cchHHHHHHHHHH
Q 036715 250 ---LSKEKQAVYLEQVLREGF---S-HPSVSGIMLWAALHPN----GC-YQMCLTDNNLQ-------NLPAGDVVDKLLK 310 (362)
Q Consensus 250 ---~~~~~QA~~~~~~~~~~~---s-~p~v~gi~~Wg~~d~~----g~-~~~gL~d~d~~-------~KPa~~~~~~li~ 310 (362)
..+..+.+|+++.+..+. + -=.|.|.+.|++.|.- |. ..+||+--|+. ||+++..++++|+
T Consensus 407 ~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~ 486 (497)
T PLN02998 407 SSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLK 486 (497)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHh
Confidence 224556667766555433 2 2358999999998753 32 36888755544 8999999999996
No 12
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.30 E-value=1.7e-09 Score=109.21 Aligned_cols=258 Identities=13% Similarity=0.112 Sum_probs=164.2
Q ss_pred hcCCeeeeCCCccccccccC-CCcccch---hHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC---CChHHHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAE-QGKVNYT---VADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN---LTGFQLQSAVN 119 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~-~G~~~~~---~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~---~~~~~~~~~~~ 119 (362)
-.+|+-++. +.|..++|. .|.+|-+ -.+++++-|+++||+..- | ++|- .+|.|+.. +...+..+.+.
T Consensus 66 lG~~~yRfS--IsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~V-T-L~H~--dlP~~L~~~GGW~n~~~v~~F~ 139 (469)
T PRK13511 66 FGVNGIRIS--IAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFV-T-LHHF--DTPEALHSNGDWLNRENIDHFV 139 (469)
T ss_pred hCCCEEEee--ccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-E-ecCC--CCcHHHHHcCCCCCHHHHHHHH
Confidence 379999998 999999997 4556644 367999999999998863 3 3343 38999854 34556788999
Q ss_pred HHHHHHHHHccCceeEEEEeccccccc-------cccccc-Ch--H-H---------HHHHHHHHHhhCCCceEEeecCC
Q 036715 120 SRIQSLMNKYKEEFIHWDVSNEILHFD-------FYEQRL-GP--K-A---------ALHFFQTAHQSDPLATLFMNEYN 179 (362)
Q Consensus 120 ~~i~~vv~ry~g~v~~WDV~NE~~~~~-------~~~~~l-G~--~-~---------~~~af~~Ar~adP~a~L~~Ndy~ 179 (362)
+|++.+++||++ |+.|=-.|||.... .+.+.. +. . | -+.|+++.|+..|+.++-+.-..
T Consensus 140 ~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~ 218 (469)
T PRK13511 140 RYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHAL 218 (469)
T ss_pred HHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999999999999 99999999997432 111110 11 1 1 13577788888888766443211
Q ss_pred CccCCCc---cchhHHH-----H------------------HHHHH-----------------HHHHcC-CcccEEEeec
Q 036715 180 VVETCSD---VNSMVDS-----Y------------------ISRLR-----------------ELRRSG-VSTDGIGLQG 215 (362)
Q Consensus 180 ~~~~~~~---~~~~~~~-----y------------------~~~i~-----------------~l~~~G-~~iDgIG~q~ 215 (362)
..-.|.. ....... + .+.+. +++... .++|=||++-
T Consensus 219 ~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNy 298 (469)
T PRK13511 219 PTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINY 298 (469)
T ss_pred ceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEech
Confidence 1111111 0000000 0 11111 011111 3578888876
Q ss_pred cCCC--------------------------------------C--------CHHHHHHHHHHHH-hCCC--cEEEeeeec
Q 036715 216 HFTV--------------------------------------P--------NLPLMRAIIDKMT-TLKL--PIWLTEVDI 246 (362)
Q Consensus 216 H~~~--------------------------------------p--------~~~~~~~~L~~~a-~~gl--pI~iTE~dv 246 (362)
+... | .+..++..|..+. ..+. ||.|||-++
T Consensus 299 Yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~ 378 (469)
T PRK13511 299 YMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGL 378 (469)
T ss_pred hhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCc
Confidence 5210 0 1345788888774 6675 799999999
Q ss_pred CCC--------CChHHHHHHHHHHHHHHh---c-CCCeeEEEEEeeecCC----CC-CcccccCCCCC-----cchHHHH
Q 036715 247 SSK--------LSKEKQAVYLEQVLREGF---S-HPSVSGIMLWAALHPN----GC-YQMCLTDNNLQ-----NLPAGDV 304 (362)
Q Consensus 247 ~~~--------~~~~~QA~~~~~~~~~~~---s-~p~v~gi~~Wg~~d~~----g~-~~~gL~d~d~~-----~KPa~~~ 304 (362)
... ..+..+.+|+++.+..+. + -=.|.|.+.|.+.|.- |. ..+||+--|+. ||+++..
T Consensus 379 ~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~w 458 (469)
T PRK13511 379 GYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKSAYW 458 (469)
T ss_pred CCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccccccHHHH
Confidence 732 124456667776655433 2 2358999999998763 32 35888755543 8999999
Q ss_pred HHHHHHh
Q 036715 305 VDKLLKE 311 (362)
Q Consensus 305 ~~~li~e 311 (362)
++++|+.
T Consensus 459 y~~~i~~ 465 (469)
T PRK13511 459 YKKLAET 465 (469)
T ss_pred HHHHHHh
Confidence 9999963
No 13
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.23 E-value=3.4e-09 Score=110.65 Aligned_cols=228 Identities=17% Similarity=0.149 Sum_probs=150.9
Q ss_pred hcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeecCCC-----------CCCCccccCCChHHHH
Q 036715 47 KRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENP-----------KYNPTWVRNLTGFQLQ 115 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~-----------~~~P~W~~~~~~~~~~ 115 (362)
-+||+++.. + -| ...++++.|.+.||-|.--+..|... +..|.|-.....++.+
T Consensus 325 ~G~N~vR~s----h---~p--------~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (604)
T PRK10150 325 IGANSFRTS----H---YP--------YSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQ 389 (604)
T ss_pred CCCCEEEec----c---CC--------CCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHH
Confidence 489999873 1 12 23678999999999776443333210 0112222211224567
Q ss_pred HHHHHHHHHHHHHccC--ceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHH
Q 036715 116 SAVNSRIQSLMNKYKE--EFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDS 193 (362)
Q Consensus 116 ~~~~~~i~~vv~ry~g--~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~ 193 (362)
+...+.+++++.|++. .|..|-+-||+.... ....++++.+.+.+|+.||+-.+-+..... ..+. ...
T Consensus 390 ~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~vt~~~~~~-~~~~-----~~~ 459 (604)
T PRK10150 390 QAHLQAIRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTRPVTCVNVMF-ATPD-----TDT 459 (604)
T ss_pred HHHHHHHHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCceEEEeccc-CCcc-----ccc
Confidence 7888999999999985 699999999974321 112367788999999999984443322110 0000 000
Q ss_pred HHHHHHHHHHcCCcccEEEeeccCC----CCCHHH----HHHHHHHHH-hCCCcEEEeeeecCC----------CCChHH
Q 036715 194 YISRLRELRRSGVSTDGIGLQGHFT----VPNLPL----MRAIIDKMT-TLKLPIWLTEVDISS----------KLSKEK 254 (362)
Q Consensus 194 y~~~i~~l~~~G~~iDgIG~q~H~~----~p~~~~----~~~~L~~~a-~~glpI~iTE~dv~~----------~~~~~~ 254 (362)
.....|.+|++.+++ ..+.+. +...|+++. ..++|+.+||++..+ ..+|+.
T Consensus 460 ----------~~~~~Dv~~~N~Y~~wy~~~~~~~~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ee~ 529 (604)
T PRK10150 460 ----------VSDLVDVLCLNRYYGWYVDSGDLETAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWSEEY 529 (604)
T ss_pred ----------ccCcccEEEEcccceecCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCCHHH
Confidence 012489999976653 123322 334444443 348999999998543 246899
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEEeeecCC---C-----CCcccccCCCCCcchHHHHHHHHH
Q 036715 255 QAVYLEQVLREGFSHPSVSGIMLWAALHPN---G-----CYQMCLTDNNLQNLPAGDVVDKLL 309 (362)
Q Consensus 255 QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~---g-----~~~~gL~d~d~~~KPa~~~~~~li 309 (362)
|+.+++..++...++|.+.|-+.|.+.|-. | ....||++.|.+|||++..++++.
T Consensus 530 q~~~~~~~~~~~~~~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~~~k~~~ 592 (604)
T PRK10150 530 QCAFLDMYHRVFDRVPAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPKSAAFLLKKRW 592 (604)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCChHHHHHHHHHh
Confidence 999999999998899999999999998721 1 136799999999999997776654
No 14
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.23 E-value=4.6e-09 Score=105.97 Aligned_cols=258 Identities=13% Similarity=0.110 Sum_probs=165.0
Q ss_pred hcCCeeeeCCCccccccccC--CCccc---chhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC----CChHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAE--QGKVN---YTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN----LTGFQLQSA 117 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~--~G~~~---~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~----~~~~~~~~~ 117 (362)
-.||+.++. +.|..++|. .+.+| .+..|++++.|+++||.+.- || +|- .+|.|+.. +...+..+.
T Consensus 83 lG~~~yR~s--i~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~V-tL-~H~--~~P~~l~~~~GGW~~~~~~~~ 156 (474)
T PRK09852 83 MGFKVFRTS--IAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLV-TL-CHF--DVPMHLVTEYGSWRNRKMVEF 156 (474)
T ss_pred cCCCeEEee--ceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-eCC--CCCHHHHHhcCCCCCHHHHHH
Confidence 379999998 999999996 33344 44578999999999998753 33 332 38999753 345667889
Q ss_pred HHHHHHHHHHHccCceeEEEEeccccccc---cc-cc---ccC----h-HH---------HHHHHHHHHhhCCCceEEee
Q 036715 118 VNSRIQSLMNKYKEEFIHWDVSNEILHFD---FY-EQ---RLG----P-KA---------ALHFFQTAHQSDPLATLFMN 176 (362)
Q Consensus 118 ~~~~i~~vv~ry~g~v~~WDV~NE~~~~~---~~-~~---~lG----~-~~---------~~~af~~Ar~adP~a~L~~N 176 (362)
+.+|.+.+++||+++|+.|=-.|||.... +. .. ..| . -| -+.|+++.|+..|+.++-+.
T Consensus 157 F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~ 236 (474)
T PRK09852 157 FSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCM 236 (474)
T ss_pred HHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999999999997321 11 00 111 1 11 13577888888898776443
Q ss_pred cCCCccCCCccc--hhHHH----H-----HH----------HHHHHHHcC--------------CcccEEEeeccCC---
Q 036715 177 EYNVVETCSDVN--SMVDS----Y-----IS----------RLRELRRSG--------------VSTDGIGLQGHFT--- 218 (362)
Q Consensus 177 dy~~~~~~~~~~--~~~~~----y-----~~----------~i~~l~~~G--------------~~iDgIG~q~H~~--- 218 (362)
-....-.|.... ....+ + ++ +.+.+.+.| .++|=||+.-+..
T Consensus 237 ~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v 316 (474)
T PRK09852 237 LAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCA 316 (474)
T ss_pred EeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeec
Confidence 211111121100 00000 0 00 011111112 2468888764421
Q ss_pred -------------------CC-----------CHHHHHHHHHHH-HhCCCcEEEeeeecCCC--------CChHHHHHHH
Q 036715 219 -------------------VP-----------NLPLMRAIIDKM-TTLKLPIWLTEVDISSK--------LSKEKQAVYL 259 (362)
Q Consensus 219 -------------------~p-----------~~~~~~~~L~~~-a~~glpI~iTE~dv~~~--------~~~~~QA~~~ 259 (362)
.| .+..|+..|..+ .+.++||.|||-++... ..+..+-+|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl 396 (474)
T PRK09852 317 SAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYL 396 (474)
T ss_pred ccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHH
Confidence 01 245688999887 57899999999999742 1234456666
Q ss_pred HHHHHHHhc----CCCeeEEEEEeeecCC----C-C-CcccccCCCCC----------cchHHHHHHHHHH
Q 036715 260 EQVLREGFS----HPSVSGIMLWAALHPN----G-C-YQMCLTDNNLQ----------NLPAGDVVDKLLK 310 (362)
Q Consensus 260 ~~~~~~~~s----~p~v~gi~~Wg~~d~~----g-~-~~~gL~d~d~~----------~KPa~~~~~~li~ 310 (362)
++.+..+.. --.|.|.+.|.+.|.- | . ..+||+--|+. ||+++..++++|+
T Consensus 397 ~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 397 REHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIA 467 (474)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 665554332 2348999999997752 4 2 36888755544 8999999999996
No 15
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.22 E-value=6.2e-09 Score=105.20 Aligned_cols=259 Identities=14% Similarity=0.135 Sum_probs=165.3
Q ss_pred hcCCeeeeCCCccccccccC--CCcccc---hhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC----CChHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAE--QGKVNY---TVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN----LTGFQLQSA 117 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~--~G~~~~---~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~----~~~~~~~~~ 117 (362)
-.||+-++. +.|..++|. .|.+|- +-.+++++.|+++||.+.- || +|- .+|.|+.. +...+..+.
T Consensus 81 lG~~~yRfS--IsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~v-TL-~H~--dlP~~L~~~yGGW~n~~~~~~ 154 (477)
T PRK15014 81 MGFKCFRTS--IAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVI-TL-SHF--EMPLHLVQQYGSWTNRKVVDF 154 (477)
T ss_pred cCCCEEEec--ccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-eCC--CCCHHHHHhcCCCCChHHHHH
Confidence 379999998 999999996 344554 3568999999999998863 33 332 28988853 445578899
Q ss_pred HHHHHHHHHHHccCceeEEEEecccccc--------cccc-c---ccC----h-HH---------HHHHHHHHHhhCCCc
Q 036715 118 VNSRIQSLMNKYKEEFIHWDVSNEILHF--------DFYE-Q---RLG----P-KA---------ALHFFQTAHQSDPLA 171 (362)
Q Consensus 118 ~~~~i~~vv~ry~g~v~~WDV~NE~~~~--------~~~~-~---~lG----~-~~---------~~~af~~Ar~adP~a 171 (362)
+.+|++.+++||+++|+.|=..|||+.. .+.. . ..+ . -| -+.|+++.|+..|+.
T Consensus 155 F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~ 234 (477)
T PRK15014 155 FVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEM 234 (477)
T ss_pred HHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999632 1110 1 011 1 11 135778888889987
Q ss_pred eEEeecCCCccCCCccc--hhHHH-------H--HH----------HHHHHHHcC---------------CcccEEEeec
Q 036715 172 TLFMNEYNVVETCSDVN--SMVDS-------Y--IS----------RLRELRRSG---------------VSTDGIGLQG 215 (362)
Q Consensus 172 ~L~~Ndy~~~~~~~~~~--~~~~~-------y--~~----------~i~~l~~~G---------------~~iDgIG~q~ 215 (362)
++-+.-....-.|.... ....+ + ++ +++.+.+++ .++|=||++-
T Consensus 235 ~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNy 314 (477)
T PRK15014 235 KVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSY 314 (477)
T ss_pred eEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcc
Confidence 76443211111111000 00000 0 00 011111111 2568888765
Q ss_pred cCC---------------------CC-----------CHHHHHHHHHHH-HhCCCcEEEeeeecCCC--------CChHH
Q 036715 216 HFT---------------------VP-----------NLPLMRAIIDKM-TTLKLPIWLTEVDISSK--------LSKEK 254 (362)
Q Consensus 216 H~~---------------------~p-----------~~~~~~~~L~~~-a~~glpI~iTE~dv~~~--------~~~~~ 254 (362)
+.. .| .+..|+..|..+ .+.++||.|||-++... ..+..
T Consensus 315 Yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~ 394 (477)
T PRK15014 315 YMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDY 394 (477)
T ss_pred eeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHH
Confidence 521 01 245688889876 47899999999999742 12345
Q ss_pred HHHHHHHHHHHHh-----cCCCeeEEEEEeeecC----CC-C-CcccccCCC----------CCcchHHHHHHHHHHh
Q 036715 255 QAVYLEQVLREGF-----SHPSVSGIMLWAALHP----NG-C-YQMCLTDNN----------LQNLPAGDVVDKLLKE 311 (362)
Q Consensus 255 QA~~~~~~~~~~~-----s~p~v~gi~~Wg~~d~----~g-~-~~~gL~d~d----------~~~KPa~~~~~~li~e 311 (362)
+.+|+++.+..+. .-=.|.|.+.|++.|. .| . ..+||+--| ..||+++..++++|+.
T Consensus 395 Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ 472 (477)
T PRK15014 395 RIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIAS 472 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccHHHHHHHHHHh
Confidence 6667776655433 2224899999999774 24 2 368887333 3489999999999963
No 16
>PLN02814 beta-glucosidase
Probab=99.21 E-value=4.6e-09 Score=106.65 Aligned_cols=256 Identities=12% Similarity=0.208 Sum_probs=162.4
Q ss_pred cCCeeeeCCCccccccccC-CCcccchh---HHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC----CChHHHHHHHH
Q 036715 48 RFNAAVFENELKWYATEAE-QGKVNYTV---ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN----LTGFQLQSAVN 119 (362)
Q Consensus 48 ~Fn~~t~en~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~----~~~~~~~~~~~ 119 (362)
.+|+-++. +.|..++|+ .|.+|-+. .+++++-|.++||+..- || +|- .+|.|+.. +...+..+.+.
T Consensus 90 G~~ayRfS--IsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~V-TL-~H~--dlP~~L~~~yGGW~n~~~i~~F~ 163 (504)
T PLN02814 90 GLESFRFS--ISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHV-TL-YHY--DLPQSLEDEYGGWINRKIIEDFT 163 (504)
T ss_pred CCCEEEEe--ccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEE-Ee-cCC--CCCHHHHHhcCCcCChhHHHHHH
Confidence 69999998 999999996 57777654 57999999999998863 33 332 28999864 24557888999
Q ss_pred HHHHHHHHHccCceeEEEEecccccccc--cc-c-ccC----------------hH-H---------HHHHHHHHHhh--
Q 036715 120 SRIQSLMNKYKEEFIHWDVSNEILHFDF--YE-Q-RLG----------------PK-A---------ALHFFQTAHQS-- 167 (362)
Q Consensus 120 ~~i~~vv~ry~g~v~~WDV~NE~~~~~~--~~-~-~lG----------------~~-~---------~~~af~~Ar~a-- 167 (362)
+|++.+++||+++|+.|=..|||..... +. . ..| .+ | -+.|+++.|+.
T Consensus 164 ~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~ 243 (504)
T PLN02814 164 AFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYK 243 (504)
T ss_pred HHHHHHHHHhCCcCCEEEeccccchhhhcccccCcCCCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999974311 10 0 010 11 1 13466777764
Q ss_pred -CCCceEEee-cCCCccCCCc-----cchh--HHHHH-----H---------HHHHHHH--------------cCCcccE
Q 036715 168 -DPLATLFMN-EYNVVETCSD-----VNSM--VDSYI-----S---------RLRELRR--------------SGVSTDG 210 (362)
Q Consensus 168 -dP~a~L~~N-dy~~~~~~~~-----~~~~--~~~y~-----~---------~i~~l~~--------------~G~~iDg 210 (362)
.|+.++-+- .+... .|.. ..+. ...+. + .+++.+. +| ++|=
T Consensus 244 ~~~~g~IGi~~~~~~~-~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg-~~DF 321 (504)
T PLN02814 244 SKQRGSIGLSIFAFGL-SPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKG-SSDF 321 (504)
T ss_pred cCCCCeEEEEEeCcee-ecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcC-CCCE
Confidence 777665442 12111 1111 0000 00010 0 0011110 12 4688
Q ss_pred EEeeccCCC-----C---------------------------------CHHHHHHHHHHHH-hCCC-cEEEeeeecCCC-
Q 036715 211 IGLQGHFTV-----P---------------------------------NLPLMRAIIDKMT-TLKL-PIWLTEVDISSK- 249 (362)
Q Consensus 211 IG~q~H~~~-----p---------------------------------~~~~~~~~L~~~a-~~gl-pI~iTE~dv~~~- 249 (362)
||++.+... + .+..++..|..+. ..+. ||.|||.++...
T Consensus 322 iGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~ 401 (504)
T PLN02814 322 VGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKH 401 (504)
T ss_pred EEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 887654210 0 2456888888874 5766 799999999732
Q ss_pred ---CChHHHHHHHHHHHHHHh----cCCCeeEEEEEeeecCC----CC-CcccccCCCCC-------cchHHHHHHHHHH
Q 036715 250 ---LSKEKQAVYLEQVLREGF----SHPSVSGIMLWAALHPN----GC-YQMCLTDNNLQ-------NLPAGDVVDKLLK 310 (362)
Q Consensus 250 ---~~~~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~----g~-~~~gL~d~d~~-------~KPa~~~~~~li~ 310 (362)
..+..+.+|+++.+..+. .-=.|.|.+.|++.|.- |. ..+||+--|+. ||+++..++++|+
T Consensus 402 ~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~ 481 (504)
T PLN02814 402 DSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLN 481 (504)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHh
Confidence 234566777776665433 22358999999998753 32 36788644433 8999999999996
Q ss_pred h
Q 036715 311 E 311 (362)
Q Consensus 311 e 311 (362)
.
T Consensus 482 ~ 482 (504)
T PLN02814 482 G 482 (504)
T ss_pred c
Confidence 3
No 17
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.21 E-value=1e-08 Score=103.70 Aligned_cols=257 Identities=13% Similarity=0.122 Sum_probs=164.8
Q ss_pred hcCCeeeeCCCccccccccC--CCcccchh---HHHHHHHHHhcCcEEEEEEeecCCCCCCCcccc----CCChHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAE--QGKVNYTV---ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVR----NLTGFQLQSA 117 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~--~G~~~~~~---~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~----~~~~~~~~~~ 117 (362)
-.+|+-++. +.|..++|. .|.+|-+. .+++++-|.++||...- || +|- .+|.|+. .+...+..+.
T Consensus 79 lG~~~yRfS--IsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~V-TL-~H~--dlP~~L~~~yGGW~n~~~i~~ 152 (476)
T PRK09589 79 MGFKCFRTS--IAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVV-TL-SHF--EMPYHLVTEYGGWRNRKLIDF 152 (476)
T ss_pred cCCCEEEec--cchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-cCC--CCCHHHHHhcCCcCChHHHHH
Confidence 379999998 999999997 44456443 57999999999998763 33 343 2898884 2445678889
Q ss_pred HHHHHHHHHHHccCceeEEEEeccccccc--------cc-cc---ccCh---H--H---------HHHHHHHHHhhCCCc
Q 036715 118 VNSRIQSLMNKYKEEFIHWDVSNEILHFD--------FY-EQ---RLGP---K--A---------ALHFFQTAHQSDPLA 171 (362)
Q Consensus 118 ~~~~i~~vv~ry~g~v~~WDV~NE~~~~~--------~~-~~---~lG~---~--~---------~~~af~~Ar~adP~a 171 (362)
+.+|++.++++|+++|+.|=-.|||+... +. .. ..|. . | -+.|+++.|+..|+.
T Consensus 153 F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~ 232 (476)
T PRK09589 153 FVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDF 232 (476)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999997431 11 00 1121 1 1 135778888888987
Q ss_pred eEEeecCCCccCCC-----ccchh-H------------------HHHHHHHH-------------HHHHcCCcccEEEee
Q 036715 172 TLFMNEYNVVETCS-----DVNSM-V------------------DSYISRLR-------------ELRRSGVSTDGIGLQ 214 (362)
Q Consensus 172 ~L~~Ndy~~~~~~~-----~~~~~-~------------------~~y~~~i~-------------~l~~~G~~iDgIG~q 214 (362)
++-+.-....-.|. |..+. . ..+.+.+. +++.+| ++|=||++
T Consensus 233 ~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g-~~DFlGiN 311 (476)
T PRK09589 233 QIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEG-CVDYIGFS 311 (476)
T ss_pred cEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcC-CCCEEEEe
Confidence 76432111111111 10000 0 00111111 111122 56888887
Q ss_pred ccCCC----------------------C-----------CHHHHHHHHHHH-HhCCCcEEEeeeecCCC--------CCh
Q 036715 215 GHFTV----------------------P-----------NLPLMRAIIDKM-TTLKLPIWLTEVDISSK--------LSK 252 (362)
Q Consensus 215 ~H~~~----------------------p-----------~~~~~~~~L~~~-a~~glpI~iTE~dv~~~--------~~~ 252 (362)
.+... | .+..|+..|..+ .+.++||.|||-++... ..+
T Consensus 312 yYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D 391 (476)
T PRK09589 312 YYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVND 391 (476)
T ss_pred cccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccC
Confidence 55320 0 145688888887 57899999999999742 123
Q ss_pred HHHHHHHHHHHHHHh----c-CCCeeEEEEEeeecC----CC--CCcccccCCCCC----------cchHHHHHHHHHH
Q 036715 253 EKQAVYLEQVLREGF----S-HPSVSGIMLWAALHP----NG--CYQMCLTDNNLQ----------NLPAGDVVDKLLK 310 (362)
Q Consensus 253 ~~QA~~~~~~~~~~~----s-~p~v~gi~~Wg~~d~----~g--~~~~gL~d~d~~----------~KPa~~~~~~li~ 310 (362)
..+.+|+++.+..+. + -=.|.|.+.|++.|. .| ...+||+--|+. ||+++..++++|+
T Consensus 392 ~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~ 470 (476)
T PRK09589 392 HYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIA 470 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHHHHHHHHH
Confidence 456667766555433 2 224899999999775 24 236888654443 8999999999996
No 18
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.20 E-value=9.4e-09 Score=104.00 Aligned_cols=258 Identities=13% Similarity=0.127 Sum_probs=165.1
Q ss_pred hcCCeeeeCCCccccccccC--CCcccch---hHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC----CChHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAE--QGKVNYT---VADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN----LTGFQLQSA 117 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~--~G~~~~~---~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~----~~~~~~~~~ 117 (362)
-.+|+-++. +.|..++|. .|.+|-+ -.+++++-|.++||...- | ++|- .+|.|+.. +...+..+.
T Consensus 85 lG~~aYRfS--IsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~V-T-L~H~--dlP~~L~~~~GGW~n~~~v~~ 158 (478)
T PRK09593 85 MGFKTYRMS--IAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLV-T-ITHF--DCPMHLIEEYGGWRNRKMVGF 158 (478)
T ss_pred cCCCEEEEe--cchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-E-eccc--CCCHHHHhhcCCCCChHHHHH
Confidence 379999998 999999997 4556644 367999999999998763 3 3343 28999852 345567889
Q ss_pred HHHHHHHHHHHccCceeEEEEeccccccc---cc-cc---ccCh-----HH---------HHHHHHHHHhhCCCceEEee
Q 036715 118 VNSRIQSLMNKYKEEFIHWDVSNEILHFD---FY-EQ---RLGP-----KA---------ALHFFQTAHQSDPLATLFMN 176 (362)
Q Consensus 118 ~~~~i~~vv~ry~g~v~~WDV~NE~~~~~---~~-~~---~lG~-----~~---------~~~af~~Ar~adP~a~L~~N 176 (362)
+.+|++.+++||+++|+.|=-.|||.... ++ .. ..|. -| -+.|+++.|+..|+.++-+.
T Consensus 159 F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~ 238 (478)
T PRK09593 159 YERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCM 238 (478)
T ss_pred HHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999999999997431 11 00 1121 11 13577888888898776443
Q ss_pred cCCCccCCCccc--hhHHH----------------------HHHHHH-------------HHHHcCCcccEEEeeccCCC
Q 036715 177 EYNVVETCSDVN--SMVDS----------------------YISRLR-------------ELRRSGVSTDGIGLQGHFTV 219 (362)
Q Consensus 177 dy~~~~~~~~~~--~~~~~----------------------y~~~i~-------------~l~~~G~~iDgIG~q~H~~~ 219 (362)
-....-.|.... ..... +.+.+. +++.+| ++|-||+.-+...
T Consensus 239 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g-~~DFlGiNyYt~~ 317 (478)
T PRK09593 239 LAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKEN-TVDFISFSYYSSR 317 (478)
T ss_pred EeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcC-CCCEEEEecccCc
Confidence 211111111100 00000 011111 011122 5688887654210
Q ss_pred ----------------------C-----------CHHHHHHHHHHH-HhCCCcEEEeeeecCCC--------CChHHHHH
Q 036715 220 ----------------------P-----------NLPLMRAIIDKM-TTLKLPIWLTEVDISSK--------LSKEKQAV 257 (362)
Q Consensus 220 ----------------------p-----------~~~~~~~~L~~~-a~~glpI~iTE~dv~~~--------~~~~~QA~ 257 (362)
| .+..|+..|..+ .+.++||.|||-++... ..+..+.+
T Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~ 397 (478)
T PRK09593 318 VASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRID 397 (478)
T ss_pred ccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHH
Confidence 1 145688888887 47889999999999742 12344566
Q ss_pred HHHHHHHHHh-----cCCCeeEEEEEeeecCC----C-C-CcccccCCCCC----------cchHHHHHHHHHHh
Q 036715 258 YLEQVLREGF-----SHPSVSGIMLWAALHPN----G-C-YQMCLTDNNLQ----------NLPAGDVVDKLLKE 311 (362)
Q Consensus 258 ~~~~~~~~~~-----s~p~v~gi~~Wg~~d~~----g-~-~~~gL~d~d~~----------~KPa~~~~~~li~e 311 (362)
|++..+..+. .--.|.|.+.|.+.|.- | . ..+||+--|+. ||+++..++++|++
T Consensus 398 yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ 472 (478)
T PRK09593 398 YLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIAS 472 (478)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHHHHHHHHHh
Confidence 7666555433 22348999999997752 3 2 35888755543 89999999999963
No 19
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.20 E-value=1.4e-08 Score=102.60 Aligned_cols=258 Identities=12% Similarity=0.090 Sum_probs=164.3
Q ss_pred hcCCeeeeCCCccccccccC-CCcccchh---HHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC---CChHHHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAE-QGKVNYTV---ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN---LTGFQLQSAVN 119 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~---~~~~~~~~~~~ 119 (362)
-.+|+-++. +.|..++|. .|.+|-+. .+++++-|+++||+..- | ++|- .+|.|+.. +...+..+.+.
T Consensus 65 lG~~~yRfS--IsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~V-T-L~H~--dlP~~L~~~GGW~n~~~v~~F~ 138 (467)
T TIGR01233 65 YGVNGIRIS--IAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFV-T-LHHF--DTPEALHSNGDFLNRENIEHFI 138 (467)
T ss_pred cCCCEEEEe--cchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-e-ccCC--CCcHHHHHcCCCCCHHHHHHHH
Confidence 379999998 999999996 46666553 57999999999998763 3 3343 28999853 34567889999
Q ss_pred HHHHHHHHHccCceeEEEEeccccccc-------cccccc-Ch--H-H---------HHHHHHHHHhhCCCceEEeecCC
Q 036715 120 SRIQSLMNKYKEEFIHWDVSNEILHFD-------FYEQRL-GP--K-A---------ALHFFQTAHQSDPLATLFMNEYN 179 (362)
Q Consensus 120 ~~i~~vv~ry~g~v~~WDV~NE~~~~~-------~~~~~l-G~--~-~---------~~~af~~Ar~adP~a~L~~Ndy~ 179 (362)
+|++.++++|++ |+.|=-.|||.... .+.+.. .. . | -+.|+++.|+..|+.++-+.-..
T Consensus 139 ~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~ 217 (467)
T TIGR01233 139 DYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHAL 217 (467)
T ss_pred HHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999999999997 99999999997531 111110 10 1 1 14578888888998777543222
Q ss_pred CccCCCc-cch--hHHH-----H------------------HHHHH-----------------HHHHc-CCcccEEEeec
Q 036715 180 VVETCSD-VNS--MVDS-----Y------------------ISRLR-----------------ELRRS-GVSTDGIGLQG 215 (362)
Q Consensus 180 ~~~~~~~-~~~--~~~~-----y------------------~~~i~-----------------~l~~~-G~~iDgIG~q~ 215 (362)
..-.|.+ ... ...+ + .+.+. +++.. ..++|=||++.
T Consensus 218 ~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGiny 297 (467)
T TIGR01233 218 PTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINY 297 (467)
T ss_pred ceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEcc
Confidence 1111211 000 0000 1 11110 11110 12457777765
Q ss_pred cCCC--------------------------------------C--------CHHHHHHHHHHH-HhCCC--cEEEeeeec
Q 036715 216 HFTV--------------------------------------P--------NLPLMRAIIDKM-TTLKL--PIWLTEVDI 246 (362)
Q Consensus 216 H~~~--------------------------------------p--------~~~~~~~~L~~~-a~~gl--pI~iTE~dv 246 (362)
+... + .+..|+..|..+ .+.++ ||.|||.++
T Consensus 298 Yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~ 377 (467)
T TIGR01233 298 YMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGL 377 (467)
T ss_pred ccceeeccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCC
Confidence 4210 0 145688888887 46776 699999999
Q ss_pred CCC-------CChHHHHHHHHHHHHHHhc----CCCeeEEEEEeeecCC----CC-CcccccCCCCC-----cchHHHHH
Q 036715 247 SSK-------LSKEKQAVYLEQVLREGFS----HPSVSGIMLWAALHPN----GC-YQMCLTDNNLQ-----NLPAGDVV 305 (362)
Q Consensus 247 ~~~-------~~~~~QA~~~~~~~~~~~s----~p~v~gi~~Wg~~d~~----g~-~~~gL~d~d~~-----~KPa~~~~ 305 (362)
... ..+..+.+|+++.+..+.. -=.|.|.+.|++.|.- |. ..+||+--|+. ||+++..+
T Consensus 378 ~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~wy 457 (467)
T TIGR01233 378 GYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWY 457 (467)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCccccccHHHHH
Confidence 742 1234566777766554432 2358999999998753 32 35788655444 89999999
Q ss_pred HHHHHh
Q 036715 306 DKLLKE 311 (362)
Q Consensus 306 ~~li~e 311 (362)
+++|+.
T Consensus 458 ~~ii~~ 463 (467)
T TIGR01233 458 KKLAET 463 (467)
T ss_pred HHHHHh
Confidence 999963
No 20
>PLN02849 beta-glucosidase
Probab=99.13 E-value=1.8e-08 Score=102.28 Aligned_cols=256 Identities=13% Similarity=0.177 Sum_probs=162.5
Q ss_pred hcCCeeeeCCCccccccccCC-Ccccchh---HHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC----CChHHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAEQ-GKVNYTV---ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN----LTGFQLQSAV 118 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~~-G~~~~~~---~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~----~~~~~~~~~~ 118 (362)
-.+|+-++. +.|..++|.. |.+|-+. .+++++-|.++||+..- || +|= .+|.|+.. +...+..+.+
T Consensus 91 lG~~aYRfS--IsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~V-TL-~H~--dlP~~L~~~yGGW~nr~~v~~F 164 (503)
T PLN02849 91 TGLDAFRFS--ISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHV-TL-FHY--DHPQYLEDDYGGWINRRIIKDF 164 (503)
T ss_pred cCCCeEEEe--ccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE-ee-cCC--CCcHHHHHhcCCcCCchHHHHH
Confidence 369999988 9999999963 6666553 57999999999998874 33 332 28988864 2345678899
Q ss_pred HHHHHHHHHHccCceeEEEEeccccccc-------cccccc----------C---h-HH---------HHHHHHHHHhh-
Q 036715 119 NSRIQSLMNKYKEEFIHWDVSNEILHFD-------FYEQRL----------G---P-KA---------ALHFFQTAHQS- 167 (362)
Q Consensus 119 ~~~i~~vv~ry~g~v~~WDV~NE~~~~~-------~~~~~l----------G---~-~~---------~~~af~~Ar~a- 167 (362)
.+|++.+++||++||+.|=-.|||.... .+.+.. + . -| -+.|+++.|+.
T Consensus 165 ~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~ 244 (503)
T PLN02849 165 TAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKY 244 (503)
T ss_pred HHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997421 111100 1 0 11 13466666764
Q ss_pred --CCCceEEee-cCCCccCCCc-----cchh--HHHH------------------HHHHH-----------HHHHcCCcc
Q 036715 168 --DPLATLFMN-EYNVVETCSD-----VNSM--VDSY------------------ISRLR-----------ELRRSGVST 208 (362)
Q Consensus 168 --dP~a~L~~N-dy~~~~~~~~-----~~~~--~~~y------------------~~~i~-----------~l~~~G~~i 208 (362)
.|++++-+- ..... .|.. ..+. ...+ .+.++ +++ +| ++
T Consensus 245 ~~~~~~~IGi~~~~~~~-~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i-~~-~~ 321 (503)
T PLN02849 245 KDMQGGSIGFSLFALGF-TPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQV-KG-SS 321 (503)
T ss_pred cCCCCCEEEEEEECcee-ecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHh-cC-CC
Confidence 477766442 12111 1211 0000 0001 11010 111 12 56
Q ss_pred cEEEeeccCCC-------------------------C---------CHHHHHHHHHHH-HhCCC-cEEEeeeecCCC---
Q 036715 209 DGIGLQGHFTV-------------------------P---------NLPLMRAIIDKM-TTLKL-PIWLTEVDISSK--- 249 (362)
Q Consensus 209 DgIG~q~H~~~-------------------------p---------~~~~~~~~L~~~-a~~gl-pI~iTE~dv~~~--- 249 (362)
|=||++-+... + .+..|+..|..+ .+.++ ||.|||.++...
T Consensus 322 DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~ 401 (503)
T PLN02849 322 DFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYAVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDL 401 (503)
T ss_pred CEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCeEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCC
Confidence 88888743210 0 245688888876 46788 799999999742
Q ss_pred ---CChHHHHHHHHHHHHHHh---c-CCCeeEEEEEeeecCC----CC-CcccccCCCCC-------cchHHHHHHHHHH
Q 036715 250 ---LSKEKQAVYLEQVLREGF---S-HPSVSGIMLWAALHPN----GC-YQMCLTDNNLQ-------NLPAGDVVDKLLK 310 (362)
Q Consensus 250 ---~~~~~QA~~~~~~~~~~~---s-~p~v~gi~~Wg~~d~~----g~-~~~gL~d~d~~-------~KPa~~~~~~li~ 310 (362)
..+..+.+|+++.+..+. + -=.|.|.+.|++.|.- |. ..+||+--|+. ||+++..++++|+
T Consensus 402 ~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~ 481 (503)
T PLN02849 402 QLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLK 481 (503)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHH
Confidence 124556677777665443 2 2358999999998753 32 36888654443 8999999999997
Q ss_pred h
Q 036715 311 E 311 (362)
Q Consensus 311 e 311 (362)
.
T Consensus 482 ~ 482 (503)
T PLN02849 482 G 482 (503)
T ss_pred h
Confidence 4
No 21
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=8.3e-08 Score=88.73 Aligned_cols=279 Identities=19% Similarity=0.205 Sum_probs=194.3
Q ss_pred EEEeccCCCceEEeecCCC---------C-CChhHH---HHH-HhcCCeeeeCCCccccccccCC------CcccchhHH
Q 036715 17 KIKQVSKDFPLGSAIASTI---------L-GNLPYQ---KWF-VKRFNAAVFENELKWYATEAEQ------GKVNYTVAD 76 (362)
Q Consensus 17 ~v~~~~~~f~fG~a~~~~~---------~-~~~~y~---~~~-~~~Fn~~t~en~~kW~~~Ep~~------G~~~~~~~D 76 (362)
.|+..+.+|.+|+.++.-+ . .+-.-+ +++ ....|+++++ -|..=-.+. |.=|...+-
T Consensus 31 ~v~~~~~dFikGaDis~l~~lE~~Gvkf~d~ng~~qD~~~iLK~~GvNyvRlR---vwndP~dsngn~yggGnnD~~k~i 107 (403)
T COG3867 31 PVENSPNDFIKGADISSLIELENSGVKFFDTNGVRQDALQILKNHGVNYVRLR---VWNDPYDSNGNGYGGGNNDLKKAI 107 (403)
T ss_pred eccCChHHhhccccHHHHHHHHHcCceEEccCChHHHHHHHHHHcCcCeEEEE---EecCCccCCCCccCCCcchHHHHH
Confidence 5677788999999887421 1 111112 233 3579999987 443211222 334566677
Q ss_pred HHHHHHHhcCcEEEE--EE-eecCCCC--CCC-ccccCCChHHHHHHHHHHHHHHHHHcc--C-ceeEEEEecccccccc
Q 036715 77 QMMEFVRANKLIVRG--HN-IFWENPK--YNP-TWVRNLTGFQLQSAVNSRIQSLMNKYK--E-EFIHWDVSNEILHFDF 147 (362)
Q Consensus 77 ~~v~~a~~~gi~v~G--H~-L~W~~~~--~~P-~W~~~~~~~~~~~~~~~~i~~vv~ry~--g-~v~~WDV~NE~~~~~~ 147 (362)
++..-|+.+||+|.. |- =+|.++. ..| .|.. ++-++++.++.+|-+.++...+ | .+..-.|-||....-.
T Consensus 108 eiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~-l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gfl 186 (403)
T COG3867 108 EIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN-LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFL 186 (403)
T ss_pred HHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh-cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCcee
Confidence 888889999999974 32 2344331 123 4654 6888999999999999999887 3 3566699999876555
Q ss_pred cccccCh------HHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC-C
Q 036715 148 YEQRLGP------KAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV-P 220 (362)
Q Consensus 148 ~~~~lG~------~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~-p 220 (362)
|.+.-|. ..+.++++++|+.+|+.++.+-= ..+. ....|.-..+.|.++++++|.||+..+..= .
T Consensus 187 wp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHl----a~g~----~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhg 258 (403)
T COG3867 187 WPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHL----AEGE----NNSLYRWIFDELTKRNVDFDVIGSSYYPYWHG 258 (403)
T ss_pred ccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEe----cCCC----CCchhhHHHHHHHHcCCCceEEeeeccccccC
Confidence 6544332 34667899999999999998873 2221 124566677889999999999999877532 4
Q ss_pred CHHHHHHHHHHHH-hCCCcEEEeeeecCCC---------------------CChHHHHHHHHHHHHHHhcCCC--eeEEE
Q 036715 221 NLPLMRAIIDKMT-TLKLPIWLTEVDISSK---------------------LSKEKQAVYLEQVLREGFSHPS--VSGIM 276 (362)
Q Consensus 221 ~~~~~~~~L~~~a-~~glpI~iTE~dv~~~---------------------~~~~~QA~~~~~~~~~~~s~p~--v~gi~ 276 (362)
++..+...|+..+ +.++.+.+-|....-. .+-+-||.++++++....+.|. -.||+
T Consensus 259 tl~nL~~nl~dia~rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvF 338 (403)
T COG3867 259 TLNNLTTNLNDIASRYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVF 338 (403)
T ss_pred cHHHHHhHHHHHHHHhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEE
Confidence 6778888888876 6799999999877310 0125689999999999998885 47899
Q ss_pred EEee-ec----CCCC-------------------CcccccCCCCCcchHHHHHHH
Q 036715 277 LWAA-LH----PNGC-------------------YQMCLTDNNLQNLPAGDVVDK 307 (362)
Q Consensus 277 ~Wg~-~d----~~g~-------------------~~~gL~d~d~~~KPa~~~~~~ 307 (362)
.|.. |- +.+| .+-.|+|-++.|.|+..++.-
T Consensus 339 YWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNqaLfdf~G~~LPSl~vFn~ 393 (403)
T COG3867 339 YWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQALFDFNGHPLPSLNVFNY 393 (403)
T ss_pred EecccceeccCCCccccchhhccCcccccCCCccchhhhhhccCCcCcchhhhhh
Confidence 9974 21 1111 246789999999999988853
No 22
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=3.4e-07 Score=90.66 Aligned_cols=265 Identities=17% Similarity=0.247 Sum_probs=166.1
Q ss_pred hHHH---HHHh-cCCeeeeCCCccccccccCCCc--ccchh---HHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCC-
Q 036715 40 PYQK---WFVK-RFNAAVFENELKWYATEAEQGK--VNYTV---ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNL- 109 (362)
Q Consensus 40 ~y~~---~~~~-~Fn~~t~en~~kW~~~Ep~~G~--~~~~~---~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~- 109 (362)
+|++ ++++ .||+.++. +.|..+-|..+. .|-.. .|++++-|.++||...--.--|. +|-|+..-
T Consensus 60 rYkeDi~L~~emG~~~~R~S--I~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd----~P~~L~~~y 133 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTS--IEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFD----LPLWLQKPY 133 (460)
T ss_pred hhHHHHHHHHHcCCCEEEee--eeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccC----CcHHHhhcc
Confidence 4554 3433 79999987 999999996655 55443 58999999999998874222233 78777542
Q ss_pred ---ChHHHHHHHHHHHHHHHHHccCceeEEEEeccccccc-------ccccc-cChH-----------HHHHHHHHHHhh
Q 036715 110 ---TGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFD-------FYEQR-LGPK-----------AALHFFQTAHQS 167 (362)
Q Consensus 110 ---~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~-------~~~~~-lG~~-----------~~~~af~~Ar~a 167 (362)
...+...++.+|++.+..||+++|+.|=..|||+... .+... ...+ .-+.|.+..|+.
T Consensus 134 gGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~avk~~~~~ 213 (460)
T COG2723 134 GGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAHALAVKAIKKI 213 (460)
T ss_pred CCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2346788999999999999999999999999997421 11111 1111 123567888899
Q ss_pred CCC--ceEEeec---CCCccCCCccchh-H-HHH-----HH----------HHHHHHHcC---------------CcccE
Q 036715 168 DPL--ATLFMNE---YNVVETCSDVNSM-V-DSY-----IS----------RLRELRRSG---------------VSTDG 210 (362)
Q Consensus 168 dP~--a~L~~Nd---y~~~~~~~~~~~~-~-~~y-----~~----------~i~~l~~~G---------------~~iDg 210 (362)
.|+ .-+.+|- |-....+.+..+. . ..+ ++ +++.|.+.| ..+|=
T Consensus 214 ~~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~Df 293 (460)
T COG2723 214 NPKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDF 293 (460)
T ss_pred CCcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCe
Confidence 986 5555552 1111111110000 0 000 00 112222222 13798
Q ss_pred EEeeccC-CC-----------------------C-----------CHHHHHHHHHHHH-hCCCcEEEeeeecCCC-----
Q 036715 211 IGLQGHF-TV-----------------------P-----------NLPLMRAIIDKMT-TLKLPIWLTEVDISSK----- 249 (362)
Q Consensus 211 IG~q~H~-~~-----------------------p-----------~~~~~~~~L~~~a-~~glpI~iTE~dv~~~----- 249 (362)
||+.-+. +. | .+..++..|.++. +.++|+.|||-++...
T Consensus 294 iG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~l~~~~~rY~~p~fItENG~G~~d~~~~ 373 (460)
T COG2723 294 IGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDILEKLYERYGIPLFITENGLGVKDEVDF 373 (460)
T ss_pred EEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHHHHHHHHHhCCCeEEecCCCCccccccc
Confidence 9987765 10 1 2567899999975 8899999999997642
Q ss_pred --CChHHHHHHHHHHHHHHh---c-CCCeeEEEEEeeecCCCC-----Cccccc--CCC----CCcchHHHHHHHHHH
Q 036715 250 --LSKEKQAVYLEQVLREGF---S-HPSVSGIMLWAALHPNGC-----YQMCLT--DNN----LQNLPAGDVVDKLLK 310 (362)
Q Consensus 250 --~~~~~QA~~~~~~~~~~~---s-~p~v~gi~~Wg~~d~~g~-----~~~gL~--d~d----~~~KPa~~~~~~li~ 310 (362)
..+..+-+|+++-+..+. + --.|.|.+.|++.|.-.| ..+||+ |.+ ..+|+++.++++++.
T Consensus 374 ~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 374 DGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHh
Confidence 123455667766554332 2 235899999999875332 245654 333 357889999999985
No 23
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.69 E-value=9.3e-06 Score=78.24 Aligned_cols=260 Identities=14% Similarity=0.060 Sum_probs=139.1
Q ss_pred CCceEEeecCCCCCChhHHHHH----HhcCCeeeeCCCccccccccCCCcccch---hHHHHHHHHHhcCcEEEEEEeec
Q 036715 24 DFPLGSAIASTILGNLPYQKWF----VKRFNAAVFENELKWYATEAEQGKVNYT---VADQMMEFVRANKLIVRGHNIFW 96 (362)
Q Consensus 24 ~f~fG~a~~~~~~~~~~y~~~~----~~~Fn~~t~en~~kW~~~Ep~~G~~~~~---~~D~~v~~a~~~gi~v~GH~L~W 96 (362)
-+.++..+|...+.-+.+++.+ ...||.+..- +.|...||++|+|||+ ..++.++.|+++||.|. +|
T Consensus 9 ~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~y--v~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi----lr 82 (319)
T PF01301_consen 9 FFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTY--VPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI----LR 82 (319)
T ss_dssp E-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE----HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE----EE
T ss_pred EEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEe--ccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE----ec
Confidence 4678889998777644444433 4689999988 9999999999999999 46799999999999764 33
Q ss_pred CCC--------CCCCccccCC-------ChHHHHHHHHHHHHHHHHHcc-------CceeEEEEecccccccccccccCh
Q 036715 97 ENP--------KYNPTWVRNL-------TGFQLQSAVNSRIQSLMNKYK-------EEFIHWDVSNEILHFDFYEQRLGP 154 (362)
Q Consensus 97 ~~~--------~~~P~W~~~~-------~~~~~~~~~~~~i~~vv~ry~-------g~v~~WDV~NE~~~~~~~~~~lG~ 154 (362)
..+ ...|.|+... +.+..++++.+|.+.++..-+ |-|..-.|=||-- ......
T Consensus 83 pGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg-----~~~~~~ 157 (319)
T PF01301_consen 83 PGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG-----SYGTDR 157 (319)
T ss_dssp EES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG-----CTSS-H
T ss_pred ccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC-----CCcccH
Confidence 222 1389998653 234567778887777666433 6799999999964 112335
Q ss_pred HHHHHHHHHHHhhCCC-ceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHH
Q 036715 155 KAALHFFQTAHQSDPL-ATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMT 233 (362)
Q Consensus 155 ~~~~~af~~Ar~adP~-a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a 233 (362)
+|++..-+.+++.-++ +.++-.|......... . . +..+.-...+++.++. +..+....+..+
T Consensus 158 ~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~------~------~-~~g~~~~~~~~~~~~~---~~~~~~~~~~~~- 220 (319)
T PF01301_consen 158 AYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPD------G------G-LPGADIYATDNFPPGD---NPDEYFGDQRSF- 220 (319)
T ss_dssp HHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCC------C--------TTTGSCEEEEEETTTS---SHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHhhCccceeeccCCCccccccc------C------C-CCcceEEeccccCCCc---hHHHHHhhhhhc-
Confidence 8888888888887777 5555554432100000 0 0 0011134455555542 112211222222
Q ss_pred hCCCcEEEeeeecCC--CCChH---HHHHHHHHHHHHHhcCCCeeEEEEE------eeecC---C-----CCC-cccccC
Q 036715 234 TLKLPIWLTEVDISS--KLSKE---KQAVYLEQVLREGFSHPSVSGIMLW------AALHP---N-----GCY-QMCLTD 293 (362)
Q Consensus 234 ~~glpI~iTE~dv~~--~~~~~---~QA~~~~~~~~~~~s~p~v~gi~~W------g~~d~---~-----g~~-~~gL~d 293 (362)
..+.|..++|+.... .++.+ .-++.+...+...++.....++.|| |++.. . .++ ....++
T Consensus 221 ~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~ 300 (319)
T PF01301_consen 221 QPNQPLMCTEFWGGWFDHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPID 300 (319)
T ss_dssp HTTS--EEEEEESS---BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-
T ss_pred CCCCCeEEEEeccccccccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCCCCCcccCCcCCccC
Confidence 346699999996432 23322 1122233333334443344444443 34432 1 122 345679
Q ss_pred CCCCcchHHHHHHHHHHh
Q 036715 294 NNLQNLPAGDVVDKLLKE 311 (362)
Q Consensus 294 ~d~~~KPa~~~~~~li~e 311 (362)
+++.++|-|..+++|+++
T Consensus 301 E~G~~~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 301 EYGQLTPKYYELRRLHQK 318 (319)
T ss_dssp TTS-B-HHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHhc
Confidence 999999999999999864
No 24
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.54 E-value=9.8e-06 Score=77.27 Aligned_cols=215 Identities=11% Similarity=0.104 Sum_probs=125.9
Q ss_pred HhcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccc---cCCChHHHHHHHHHHH
Q 036715 46 VKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWV---RNLTGFQLQSAVNSRI 122 (362)
Q Consensus 46 ~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~---~~~~~~~~~~~~~~~i 122 (362)
..+||+++.. .+ | ...+.+++|.+.||.|..-...+... ....+- .....++..+.+.+.+
T Consensus 47 ~~G~N~iR~~--h~-----p--------~~~~~~~~cD~~GilV~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (298)
T PF02836_consen 47 EMGFNAIRTH--HY-----P--------PSPRFYDLCDELGILVWQEIPLEGHG-SWQDFGNCNYDADDPEFRENAEQEL 110 (298)
T ss_dssp HTT-SEEEET--TS---------------SHHHHHHHHHHT-EEEEE-S-BSCT-SSSSTSCTSCTTTSGGHHHHHHHHH
T ss_pred hcCcceEEcc--cc-----c--------CcHHHHHHHhhcCCEEEEeccccccC-ccccCCccccCCCCHHHHHHHHHHH
Confidence 4589999974 11 1 23678999999999887544332110 000010 0112445677888899
Q ss_pred HHHHHHccC--ceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHH
Q 036715 123 QSLMNKYKE--EFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRE 200 (362)
Q Consensus 123 ~~vv~ry~g--~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~ 200 (362)
++++.|++. .|..|.+-||+ ....+++...+.+|+.||+-.+..+.... ..
T Consensus 111 ~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~-~~----------------- 163 (298)
T PF02836_consen 111 REMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYASNGW-DP----------------- 163 (298)
T ss_dssp HHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTS-GG-----------------
T ss_pred HHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeeccccc-cc-----------------
Confidence 999999985 79999999998 22466788999999999997665554311 00
Q ss_pred HHHcCCcccEEEeecc--C--CCCCHHHHHHHHHHH-HhCCCcEEEeeeecCCCC---ChHHHHHHHH-----------H
Q 036715 201 LRRSGVSTDGIGLQGH--F--TVPNLPLMRAIIDKM-TTLKLPIWLTEVDISSKL---SKEKQAVYLE-----------Q 261 (362)
Q Consensus 201 l~~~G~~iDgIG~q~H--~--~~p~~~~~~~~L~~~-a~~glpI~iTE~dv~~~~---~~~~QA~~~~-----------~ 261 (362)
.+|.+++..+ . ..+.+..+...++.. ...++|+.+||++..... .......... .
T Consensus 164 ------~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~g~~~~~~~~~~~~~~~q~~~~~~ 237 (298)
T PF02836_consen 164 ------YVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSKGGDSEYWQLWSWYEEYQGAFIWD 237 (298)
T ss_dssp ------STSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-TTHHHHHHHHHHCTTEEEEEESH
T ss_pred ------ccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccCCCccccccccccCchhhhhhhhh
Confidence 1121221111 1 113455666667663 578999999999987632 1111111111 1
Q ss_pred HHHHHh--cCCCeeEEEEEeeecCCC------CCcccccCCCCCcchHHHHHHHHH
Q 036715 262 VLREGF--SHPSVSGIMLWAALHPNG------CYQMCLTDNNLQNLPAGDVVDKLL 309 (362)
Q Consensus 262 ~~~~~~--s~p~v~gi~~Wg~~d~~g------~~~~gL~d~d~~~KPa~~~~~~li 309 (362)
....+. ..+.+.|-++|.+.|=.+ ...-||+|.|.+||+++..+++..
T Consensus 238 ~~~~~~~~~~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~ 293 (298)
T PF02836_consen 238 YQDQAIQRRDPYVAGEFYWTGFDFGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQW 293 (298)
T ss_dssp SBHHHEEEEETTESEEEEEETTTTSCSSBTGGGGSBESBETTSEBBHHHHHHHHHH
T ss_pred hhhhhhccccccccceeeecceEeccCCCCCeeeeccEECCcCCcCHHHHHHHHHh
Confidence 222222 246667777776654221 113499999999999998877654
No 25
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.23 E-value=0.00055 Score=75.66 Aligned_cols=205 Identities=16% Similarity=0.119 Sum_probs=126.1
Q ss_pred HhcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEee-cCCCCCCCccccCCChHHHHHHHHHHHHH
Q 036715 46 VKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIF-WENPKYNPTWVRNLTGFQLQSAVNSRIQS 124 (362)
Q Consensus 46 ~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~-W~~~~~~P~W~~~~~~~~~~~~~~~~i~~ 124 (362)
..+||+++.. + +-...++++.|.+.||-|.--.-+ +|......++-.....++..+++.+.+++
T Consensus 366 ~~g~NavR~s----H-----------yP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~ 430 (1021)
T PRK10340 366 QHNINSVRTA----H-----------YPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVR 430 (1021)
T ss_pred HCCCCEEEec----C-----------CCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHH
Confidence 3589999863 1 112357899999999977642211 11100011100011334556778888999
Q ss_pred HHHHccC--ceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHH
Q 036715 125 LMNKYKE--EFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELR 202 (362)
Q Consensus 125 vv~ry~g--~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~ 202 (362)
++.|++. .|..|-+-||... |.+ .+.+++++|+.||.-.+-+.+ ..
T Consensus 431 mV~RdrNHPSIi~WslGNE~~~--------g~~-~~~~~~~~k~~DptR~v~~~~------~~----------------- 478 (1021)
T PRK10340 431 HIHAQKNHPSIIIWSLGNESGY--------GCN-IRAMYHAAKALDDTRLVHYEE------DR----------------- 478 (1021)
T ss_pred HHHhCCCCCEEEEEECccCccc--------cHH-HHHHHHHHHHhCCCceEEeCC------Cc-----------------
Confidence 9999985 7999999999732 333 378899999999986553321 00
Q ss_pred HcCCcccEEEeeccCCCCCHHHHHHHHHHHHh--CCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEee
Q 036715 203 RSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTT--LKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAA 280 (362)
Q Consensus 203 ~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~--~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~ 280 (362)
.....|.+|. ++ +.+.. +..+++ .++|+.++|+.-..+.+.-. ++++.....+||.+.|-++|.+
T Consensus 479 -~~~~~Dv~~~-~Y---~~~~~----~~~~~~~~~~kP~i~~Ey~hamgn~~g~----~~~yw~~~~~~p~l~GgfiW~~ 545 (1021)
T PRK10340 479 -DAEVVDVIST-MY---TRVEL----MNEFGEYPHPKPRILCEYAHAMGNGPGG----LTEYQNVFYKHDCIQGHYVWEW 545 (1021)
T ss_pred -Cccccceecc-cc---CCHHH----HHHHHhCCCCCcEEEEchHhccCCCCCC----HHHHHHHHHhCCceeEEeeeec
Confidence 0013566663 11 22333 233332 37999999987542211111 2333344567999999999998
Q ss_pred ecC-------CC------------CC------cccccCCCCCcchHHHHHHHHHH
Q 036715 281 LHP-------NG------------CY------QMCLTDNNLQNLPAGDVVDKLLK 310 (362)
Q Consensus 281 ~d~-------~g------------~~------~~gL~d~d~~~KPa~~~~~~li~ 310 (362)
.|- .| .+ .-||++.|.+|||++..++++.+
T Consensus 546 ~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 546 CDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred CcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCCCCCChhHHHHHHhcc
Confidence 762 11 11 12899999999999999988875
No 26
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.99 E-value=0.00059 Score=69.48 Aligned_cols=305 Identities=15% Similarity=0.204 Sum_probs=152.9
Q ss_pred CcCCCCeEEEEec---cCCCceEEeecCC------CCCChh----HHHHHH---hcCCeeeeCC---C--ccccccccCC
Q 036715 9 DILQGAVIKIKQV---SKDFPLGSAIAST------ILGNLP----YQKWFV---KRFNAAVFEN---E--LKWYATEAEQ 67 (362)
Q Consensus 9 ~p~~~a~v~v~~~---~~~f~fG~a~~~~------~~~~~~----y~~~~~---~~Fn~~t~en---~--~kW~~~Ep~~ 67 (362)
.+.+.+.|+|... ..=..||+|+... .+..+. .+++|. -+||..+.+- + ...++....+
T Consensus 58 ~~~~~~~i~id~~~~yQ~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~ 137 (496)
T PF02055_consen 58 DPSSSVTITIDPSTTYQTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVP 137 (496)
T ss_dssp --SSSEEEEEEEEEEEEE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-ST
T ss_pred ccccceeeeecccccceEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCC
Confidence 4455667776433 2346899988532 133222 233332 2466666541 1 2445554445
Q ss_pred Ccc---cch--hHH-----HHHHHHHh--cCcEEEEEEeecCCCCCCCccccC---C------C---hHHHHHHHHHHHH
Q 036715 68 GKV---NYT--VAD-----QMMEFVRA--NKLIVRGHNIFWENPKYNPTWVRN---L------T---GFQLQSAVNSRIQ 123 (362)
Q Consensus 68 G~~---~~~--~~D-----~~v~~a~~--~gi~v~GH~L~W~~~~~~P~W~~~---~------~---~~~~~~~~~~~i~ 123 (362)
+.+ +|+ .-| .+++.|.+ .++++.+-+ |. .|.||+. + . .++..+++.+|.-
T Consensus 138 ~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WS----pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~v 211 (496)
T PF02055_consen 138 GDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WS----PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFV 211 (496)
T ss_dssp THTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S-------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHH
T ss_pred CCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CC----CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHH
Confidence 432 232 223 24554443 246666543 64 6899974 1 1 2356788888988
Q ss_pred HHHHHccC---ceeEEEEeccccccc----ccccc-cC----hHHHHHHHH-HHHhhCC--CceEEeecCCCccCCCccc
Q 036715 124 SLMNKYKE---EFIHWDVSNEILHFD----FYEQR-LG----PKAALHFFQ-TAHQSDP--LATLFMNEYNVVETCSDVN 188 (362)
Q Consensus 124 ~vv~ry~g---~v~~WDV~NE~~~~~----~~~~~-lG----~~~~~~af~-~Ar~adP--~a~L~~Ndy~~~~~~~~~~ 188 (362)
+-+..|+. .|.+--+-|||.... .|... .. .++++..+. +.++..+ +++|++.|-+-..
T Consensus 212 kfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~------ 285 (496)
T PF02055_consen 212 KFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN------ 285 (496)
T ss_dssp HHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG------
T ss_pred HHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc------
Confidence 88888874 477889999998632 23221 11 245555443 5566777 8999998755321
Q ss_pred hhHHHHHHHHHHHHH---cCCcccEEEeeccCCCCCHHHHHHHHHHHHhCCCcEEEeeeecCCCC-------ChHHHHHH
Q 036715 189 SMVDSYISRLRELRR---SGVSTDGIGLQGHFTVPNLPLMRAIIDKMTTLKLPIWLTEVDISSKL-------SKEKQAVY 258 (362)
Q Consensus 189 ~~~~~y~~~i~~l~~---~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~~glpI~iTE~dv~~~~-------~~~~QA~~ 258 (362)
...|.. .+++ +.-.|||||+|.+.+.+....|.+.-++ -.++.|+.||-...... +.-..++.
T Consensus 286 --~~~~~~---~il~d~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~--~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~ 358 (496)
T PF02055_consen 286 --LPDYAD---TILNDPEAAKYVDGIAFHWYGGDPSPQALDQVHNK--FPDKFLLFTEACCGSWNWDTSVDLGSWDRAER 358 (496)
T ss_dssp --TTHHHH---HHHTSHHHHTTEEEEEEEETTCS-HCHHHHHHHHH--STTSEEEEEEEESS-STTS-SS-TTHHHHHHH
T ss_pred --cchhhh---hhhcChhhHhheeEEEEECCCCCchhhHHHHHHHH--CCCcEEEeeccccCCCCcccccccccHHHHHH
Confidence 122322 2222 2237999999999875432223222222 35899999998765421 11234443
Q ss_pred HHHHHHHHhcCCCeeEEEEEeee-cCCC--------CCcccccCCC---CCcchHHHHHHHHHHhhcCCC--ceeeeC-C
Q 036715 259 LEQVLREGFSHPSVSGIMLWAAL-HPNG--------CYQMCLTDNN---LQNLPAGDVVDKLLKECQTGE--VTGHTD-A 323 (362)
Q Consensus 259 ~~~~~~~~~s~p~v~gi~~Wg~~-d~~g--------~~~~gL~d~d---~~~KPa~~~~~~li~ew~t~~--~~~~td-~ 323 (362)
+...+-..+.| .+.|.+.|++. |..| +....++|.+ +...|.|.++..+-+--.... ...+.+ .
T Consensus 359 y~~~ii~~lnn-~~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~ 437 (496)
T PF02055_consen 359 YAHDIIGDLNN-WVSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSS 437 (496)
T ss_dssp HHHHHHHHHHT-TEEEEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSS
T ss_pred HHHHHHHHHHh-hceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcccCCCCEEEEeeccCC
Confidence 33333345655 79999999874 3322 1233445543 456799998887765333211 111222 2
Q ss_pred CcEEEEeeEE
Q 036715 324 HGSYSFYGFL 333 (362)
Q Consensus 324 ~G~~~~~gf~ 333 (362)
++-+....|.
T Consensus 438 ~~~l~~vAF~ 447 (496)
T PF02055_consen 438 DSGLEAVAFL 447 (496)
T ss_dssp TTTEEEEEEE
T ss_pred CCceeEEEEE
Confidence 3357777787
No 27
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.81 E-value=3.1e-05 Score=60.19 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=32.5
Q ss_pred HHHHcc--CceeEEEEecc-ccccc-----ccccccCh---HHHHHHHHHHHhhCCCceEEeec
Q 036715 125 LMNKYK--EEFIHWDVSNE-ILHFD-----FYEQRLGP---KAALHFFQTAHQSDPLATLFMNE 177 (362)
Q Consensus 125 vv~ry~--g~v~~WDV~NE-~~~~~-----~~~~~lG~---~~~~~af~~Ar~adP~a~L~~Nd 177 (362)
+++||+ ++|.+|||+|| |.... .+.+...+ ++++.+++++|++||+..|-.+-
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~ 64 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF 64 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec
Confidence 467776 48999999999 54111 11111112 56889999999999999987763
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=97.76 E-value=0.00045 Score=73.38 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=109.3
Q ss_pred CCceEEeecCCCCCChhHHHHH----HhcCCeeeeCCCccccccccCCCcccchh---HHHHHHHHHhcCcEEEEE---E
Q 036715 24 DFPLGSAIASTILGNLPYQKWF----VKRFNAAVFENELKWYATEAEQGKVNYTV---ADQMMEFVRANKLIVRGH---N 93 (362)
Q Consensus 24 ~f~fG~a~~~~~~~~~~y~~~~----~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~---~D~~v~~a~~~gi~v~GH---~ 93 (362)
-+.+..++|..+..-+.+++.+ ...||.+..= .-|..-||++|+|||+. ..+.++.|++.||-|.-. -
T Consensus 44 ~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tY--V~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPY 121 (840)
T PLN03059 44 RILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPY 121 (840)
T ss_pred EEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEE--ecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcc
Confidence 4577888887666544455444 4589999876 99999999999999974 557899999999876521 1
Q ss_pred e--ecCCCCCCCccccCC-------ChHHHHHHHHHHHHHHHHHc---------cCceeEEEEeccccccccccc--ccC
Q 036715 94 I--FWENPKYNPTWVRNL-------TGFQLQSAVNSRIQSLMNKY---------KEEFIHWDVSNEILHFDFYEQ--RLG 153 (362)
Q Consensus 94 L--~W~~~~~~P~W~~~~-------~~~~~~~~~~~~i~~vv~ry---------~g~v~~WDV~NE~~~~~~~~~--~lG 153 (362)
+ =|.. ...|.|+... +++..++++++|++.++... +|-|....|=||-- ++... .-+
T Consensus 122 IcAEw~~-GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG--s~~~~~~~~d 198 (840)
T PLN03059 122 ICAEWNF-GGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG--PVEWEIGAPG 198 (840)
T ss_pred eeeeecC-CCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc--ceecccCcch
Confidence 1 1433 3689998642 24567888999988888766 36799999999942 22211 223
Q ss_pred hHHHHHHHHHHHhhCCCceEEeec
Q 036715 154 PKAALHFFQTAHQSDPLATLFMNE 177 (362)
Q Consensus 154 ~~~~~~af~~Ar~adP~a~L~~Nd 177 (362)
.+|++..-++|++..-++.|+..+
T Consensus 199 ~~Yl~~l~~~~~~~Gi~VPl~t~d 222 (840)
T PLN03059 199 KAYTKWAADMAVKLGTGVPWVMCK 222 (840)
T ss_pred HHHHHHHHHHHHHcCCCcceEECC
Confidence 579999999999998899999887
No 29
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.00018 Score=75.06 Aligned_cols=117 Identities=19% Similarity=0.295 Sum_probs=86.2
Q ss_pred ccCCCceEEeecCCCCCChh----HHHHHHhcCCeeeeCCCccccccccCCCcccchhHHHH-HHHHHhcCcEEEEEEee
Q 036715 21 VSKDFPLGSAIASTILGNLP----YQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQM-MEFVRANKLIVRGHNIF 95 (362)
Q Consensus 21 ~~~~f~fG~a~~~~~~~~~~----y~~~~~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~-v~~a~~~gi~v~GH~L~ 95 (362)
-+.-+..|.|.++..+.... .+.+-..+||.++. +.|-|+.+||++|+|+|+..|.. ++.|.+.|+.|.--+
T Consensus 12 g~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~i-g~faW~~~eP~eG~fdf~~~D~~~l~~a~~~Gl~vil~t-- 88 (673)
T COG1874 12 GRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRI-GYFAWNLHEPEEGKFDFTWLDEIFLERAYKAGLYVILRT-- 88 (673)
T ss_pred CceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEe-eeEEeeccCccccccCcccchHHHHHHHHhcCceEEEec--
Confidence 34567889999988776543 33344578999999 24999999999999999999999 999999999886433
Q ss_pred cCCC-CCCCccccCC------------------------ChHHHHHHHHHHHHHHHHH-cc--CceeEEEEeccc
Q 036715 96 WENP-KYNPTWVRNL------------------------TGFQLQSAVNSRIQSLMNK-YK--EEFIHWDVSNEI 142 (362)
Q Consensus 96 W~~~-~~~P~W~~~~------------------------~~~~~~~~~~~~i~~vv~r-y~--g~v~~WDV~NE~ 142 (362)
.+ ...|.|+..- +.+-.++.....++.++.| |+ +-|..|.+=||=
T Consensus 89 --~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY 161 (673)
T COG1874 89 --GPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEY 161 (673)
T ss_pred --CCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCcc
Confidence 11 2345555420 1123566677777889999 87 469999999983
No 30
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.60 E-value=0.0041 Score=60.68 Aligned_cols=215 Identities=14% Similarity=0.164 Sum_probs=103.4
Q ss_pred cccCCCcccchhH---HHHHHHHHhcCcEEEEEEeecCCCCCCCccccCC------------ChHHHHHHHHHHHHHHHH
Q 036715 63 TEAEQGKVNYTVA---DQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNL------------TGFQLQSAVNSRIQSLMN 127 (362)
Q Consensus 63 ~Ep~~G~~~~~~~---D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~------------~~~~~~~~~~~~i~~vv~ 127 (362)
..+..|.|||+.- -.+++.|+++|+... +.... -.|-|+..- -.++-.+++.+|+..|+.
T Consensus 91 f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f---~aFSN--SPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~ 165 (384)
T PF14587_consen 91 FLPADGSYDWDADAGQRWFLKAAKERGVNIF---EAFSN--SPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVK 165 (384)
T ss_dssp SB-TTS-B-TTSSHHHHHHHHHHHHTT---E---EEE-S--SS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHH
T ss_pred ccCCCCCcCCCCCHHHHHHHHHHHHcCCCeE---EEeec--CCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHH
Confidence 3467899999852 146888999998753 22221 145566420 012357789999999999
Q ss_pred HccC---ceeEEEEeccccccccccc--ccC--------hHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHH
Q 036715 128 KYKE---EFIHWDVSNEILHFDFYEQ--RLG--------PKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSY 194 (362)
Q Consensus 128 ry~g---~v~~WDV~NE~~~~~~~~~--~lG--------~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y 194 (362)
+|+. .|.+-+.+|||... |.. .-| .+.++...+..++...++++.+.|-+-++.-..........
T Consensus 166 ~~~~~GI~f~~IsP~NEP~~~--W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~r 243 (384)
T PF14587_consen 166 HYKKWGINFDYISPFNEPQWN--WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWGR 243 (384)
T ss_dssp HHHCTT--EEEEE--S-TTS---GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS-
T ss_pred HHHhcCCccceeCCcCCCCCC--CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchhh
Confidence 9963 69999999999742 421 112 13455566677778889999998744332211110000011
Q ss_pred HHHHHHHHHcC-------C--cccEEEeeccCCC-C--CHHHHHHHHHH-HHhC--CCcEEEeeeecCCCC-------Ch
Q 036715 195 ISRLRELRRSG-------V--STDGIGLQGHFTV-P--NLPLMRAIIDK-MTTL--KLPIWLTEVDISSKL-------SK 252 (362)
Q Consensus 195 ~~~i~~l~~~G-------~--~iDgIG~q~H~~~-p--~~~~~~~~L~~-~a~~--glpI~iTE~dv~~~~-------~~ 252 (362)
-..|+.+-... . --..|.-|+++.. | .+..+|+.|.. +.+. ++.+|-||+.+-... +.
T Consensus 244 ~~~i~~ff~~~s~~yi~~l~~v~~~i~~HsYwt~~~~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il~~~~~~~~~~g~ 323 (384)
T PF14587_consen 244 GNQIEAFFNPDSSTYIGDLPNVPNIISGHSYWTDSPWDDLRDIRKQLADKLDKYSPGLKYWQTEYCILGDNYEIIEGGGY 323 (384)
T ss_dssp --HHHHHHSTTSTT--TT-TTEEEEEEE--TT-SSSHHHHHHHHHHHHHHHHTTSS--EEEE----S----TTT-SSS-H
T ss_pred hhhHHhhcCCCchhhhhccccchhheeecccccCCCHHHHHHHHHHHHHHHHhhCcCCceeeeeeeeccCCcccccCCCc
Confidence 12345544422 1 1345777777755 3 23345555544 3445 999999999886421 10
Q ss_pred ----H-HHHHHHHHHHHHHhcCCCeeEEEEEeeecCC
Q 036715 253 ----E-KQAVYLEQVLREGFSHPSVSGIMLWAALHPN 284 (362)
Q Consensus 253 ----~-~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~ 284 (362)
. .-|-|+.+++-.=+-...+.+-.||....+.
T Consensus 324 ~~~~~m~~aLy~arviH~DL~~anassW~wW~a~~~~ 360 (384)
T PF14587_consen 324 DRDLGMDTALYVARVIHNDLTYANASSWQWWTAISPY 360 (384)
T ss_dssp HHHHHH--HHHHHHHHHHHHHTS--SEEEEEESEESS
T ss_pred ccchhHHHHHHHHHHHHhhhhhcccchhHHHHHhccc
Confidence 0 1256777777666666788898888765543
No 31
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=97.55 E-value=0.025 Score=62.79 Aligned_cols=213 Identities=17% Similarity=0.159 Sum_probs=126.6
Q ss_pred HhcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeec-CCCCCCCc-cccCCChHHHHHHHHHHHH
Q 036715 46 VKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFW-ENPKYNPT-WVRNLTGFQLQSAVNSRIQ 123 (362)
Q Consensus 46 ~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W-~~~~~~P~-W~~~~~~~~~~~~~~~~i~ 123 (362)
..+||+++.. . +-..++++++|.+.||-|.--.-++ |. ..|. ++ .+.++..+++.+.++
T Consensus 382 ~~g~NaVR~s--H-------------yP~~p~fydlcDe~GilV~dE~~~e~hg--~~~~~~~--~~dp~~~~~~~~~~~ 442 (1027)
T PRK09525 382 QHNFNAVRCS--H-------------YPNHPLWYELCDRYGLYVVDEANIETHG--MVPMNRL--SDDPRWLPAMSERVT 442 (1027)
T ss_pred HCCCCEEEec--C-------------CCCCHHHHHHHHHcCCEEEEecCccccC--CccccCC--CCCHHHHHHHHHHHH
Confidence 3589999973 1 1123678999999999776432221 11 1121 11 133456778889999
Q ss_pred HHHHHccC--ceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHH
Q 036715 124 SLMNKYKE--EFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLREL 201 (362)
Q Consensus 124 ~vv~ry~g--~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l 201 (362)
+++.|++. .|..|-+-||+-. | .....+++++|+.||.-.+-+.+-.. .. .+.+++-.+
T Consensus 443 ~mV~RdrNHPSIi~WSlgNE~~~--------g-~~~~~l~~~~k~~DptRpV~y~~~~~-~~---------~~~Dv~~~m 503 (1027)
T PRK09525 443 RMVQRDRNHPSIIIWSLGNESGH--------G-ANHDALYRWIKSNDPSRPVQYEGGGA-DT---------AATDIICPM 503 (1027)
T ss_pred HHHHhCCCCCEEEEEeCccCCCc--------C-hhHHHHHHHHHhhCCCCcEEECCCCC-CC---------CccccccCC
Confidence 99999985 6999999999732 2 22467889999999986665542100 00 011111111
Q ss_pred HHcCCcccEEEeeccCCCCCHHHHHHHHHHHHh---CCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEE
Q 036715 202 RRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTT---LKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLW 278 (362)
Q Consensus 202 ~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~---~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~W 278 (362)
.. .+++ .+.....+ ...|+.+.. .++|+.++|+.=..+.+. -.++++.....++|.+.|=+.|
T Consensus 504 y~---~~~~--~~~~~~~~-----~~~~~~~~~~~~~~kP~i~cEY~Hamgn~~----g~l~~yw~~~~~~~~~~GgfIW 569 (1027)
T PRK09525 504 YA---RVDE--DQPFPAVP-----KWSIKKWISLPGETRPLILCEYAHAMGNSL----GGFAKYWQAFRQYPRLQGGFIW 569 (1027)
T ss_pred CC---Cccc--cccccccc-----hHHHHHHHhcCCCCCCEEEEechhcccCcC----ccHHHHHHHHhcCCCeeEEeeE
Confidence 11 0110 00000001 112444433 269999999974432111 1345556666689999999999
Q ss_pred eeecC-------CC---------C---C------cccccCCCCCcchHHHHHHHHHH
Q 036715 279 AALHP-------NG---------C---Y------QMCLTDNNLQNLPAGDVVDKLLK 310 (362)
Q Consensus 279 g~~d~-------~g---------~---~------~~gL~d~d~~~KPa~~~~~~li~ 310 (362)
.+.|- .| + + .-||+..|.+|+|.+..++++++
T Consensus 570 ~w~Dqg~~~~~~~G~~~~~YGGDfgd~p~d~nFc~dGlv~~dR~p~p~~~E~K~v~q 626 (1027)
T PRK09525 570 DWVDQGLTKYDENGNPWWAYGGDFGDTPNDRQFCMNGLVFPDRTPHPALYEAKHAQQ 626 (1027)
T ss_pred eccCcceeeECCCCCEEEEECCcCCCCCCCCCceeceeECCCCCCCccHHHHHhhcC
Confidence 97541 11 1 0 12889999999999999999986
No 32
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.0035 Score=61.12 Aligned_cols=232 Identities=17% Similarity=0.188 Sum_probs=147.8
Q ss_pred cCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCC-ccccCCChH-HHHHHHHHHHHHH
Q 036715 48 RFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNP-TWVRNLTGF-QLQSAVNSRIQSL 125 (362)
Q Consensus 48 ~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P-~W~~~~~~~-~~~~~~~~~i~~v 125 (362)
.||.+..- --|...+. .=-|+|+..|++++-..+.|+++.---|.|+..+..- .|-...+++ ...+.+..+++.+
T Consensus 18 ~v~yi~~~--~v~h~~~q-~~~~~~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~~fl~h~ 94 (428)
T COG3664 18 QVNYIRRH--GVWHVNAQ-KLFYPFTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIAAFLKHV 94 (428)
T ss_pred ceeeehhc--ceeeeeec-cccCChHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHHHHHHHH
Confidence 46666443 33333323 4468899999999999998876544446676532222 465555544 3788888999999
Q ss_pred HHHccC-ceeEE--EEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHH
Q 036715 126 MNKYKE-EFIHW--DVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELR 202 (362)
Q Consensus 126 v~ry~g-~v~~W--DV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~ 202 (362)
+.||+- .|.-| .++|||... .--.+|.+.-+..||+.+|...|-=. .+ ... +..+.
T Consensus 95 ~~~vg~e~v~kw~f~~~~~pn~~-----ad~~eyfk~y~~~a~~~~p~i~vg~~-w~-----------~e~----l~~~~ 153 (428)
T COG3664 95 IRRVGVEFVRKWPFYSPNEPNLL-----ADKQEYFKLYDATARQRAPSIQVGGS-WN-----------TER----LHEFL 153 (428)
T ss_pred HHHhChhheeecceeecCCCCcc-----cchHHHHHHHHhhhhccCcceeeccc-cC-----------cHH----Hhhhh
Confidence 999973 45555 899998642 12247888888999999999887420 11 111 22333
Q ss_pred HcCCcccEEEeeccC------CCCC------------HHHHHHHHHHHH--hCCCcEEEeeeecCCCC-----ChHHHHH
Q 036715 203 RSGVSTDGIGLQGHF------TVPN------------LPLMRAIIDKMT--TLKLPIWLTEVDISSKL-----SKEKQAV 257 (362)
Q Consensus 203 ~~G~~iDgIG~q~H~------~~p~------------~~~~~~~L~~~a--~~glpI~iTE~dv~~~~-----~~~~QA~ 257 (362)
+.+.+||-+-.++.. ..++ +++++...+.+. .+|+|..+||..-.+.. +.-..|.
T Consensus 154 k~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt~~~~~~n~sy~raa 233 (428)
T COG3664 154 KKADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLTGPREPTNGSYVRAA 233 (428)
T ss_pred hccCcccceeecccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHHhccCCCcceeecccccCCCccccCceeehHH
Confidence 456677776666543 2221 334555555554 45779999999887642 2223466
Q ss_pred HHHHHHHHHhcCCCeeEEEEEeeecCC---CC------CcccccCCCCCcchHHHHH
Q 036715 258 YLEQVLREGFSHPSVSGIMLWAALHPN---GC------YQMCLTDNNLQNLPAGDVV 305 (362)
Q Consensus 258 ~~~~~~~~~~s~p~v~gi~~Wg~~d~~---g~------~~~gL~d~d~~~KPa~~~~ 305 (362)
++-+.|+.+ -+-|.++..|+..+.. |. ..++|++.-.-.||||-+.
T Consensus 234 ~i~~~Lr~~--g~~v~a~~yW~~sdl~e~~g~~~~~~~~gfel~~~~~~rrpa~~~~ 288 (428)
T COG3664 234 YIMRLLREA--GSPVDAFGYWTNSDLHEEHGPPEAPFVGGFELFAPYGGRRPAWMAA 288 (428)
T ss_pred HHHHHHHhc--CChhhhhhhhhcccccccCCCcccccccceeeecccccchhHHHHH
Confidence 666666654 3579999999986643 21 2477887777789998664
No 33
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=96.17 E-value=0.023 Score=56.49 Aligned_cols=223 Identities=12% Similarity=0.066 Sum_probs=140.7
Q ss_pred cchhHHHHHHHHHhcCcEEEEEEee-cCCC---CCCCccccCCC------hHHHHHHHHHHHHHHHHHccC--ceeEEEE
Q 036715 71 NYTVADQMMEFVRANKLIVRGHNIF-WENP---KYNPTWVRNLT------GFQLQSAVNSRIQSLMNKYKE--EFIHWDV 138 (362)
Q Consensus 71 ~~~~~D~~v~~a~~~gi~v~GH~L~-W~~~---~~~P~W~~~~~------~~~~~~~~~~~i~~vv~ry~g--~v~~WDV 138 (362)
++..++..++-|...+|++.--.++ |... ++.=.|.-..+ ++..+...++|++.++.-||- -|..|..
T Consensus 65 ~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l 144 (587)
T COG3934 65 NVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWAL 144 (587)
T ss_pred cHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHh
Confidence 3667899999999999998632222 2221 12224553222 234677789999999999984 5889999
Q ss_pred ecccccccccccccC---hHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeec
Q 036715 139 SNEILHFDFYEQRLG---PKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQG 215 (362)
Q Consensus 139 ~NE~~~~~~~~~~lG---~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~ 215 (362)
-|||..... ..+ -++...++..+|..||+-.+-++|-.. |+.. ...| -+ ++ .+|--+.|.
T Consensus 145 ~Ne~lv~~p---~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~s---p~~~---~~py--N~-----r~-~vDya~~hL 207 (587)
T COG3934 145 RNEPLVEAP---ISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPAS---PWPQ---YAPY--NA-----RF-YVDYAANHL 207 (587)
T ss_pred cCCcccccc---CChhHHHHHHHHHHHHhhccCCCCeeecCCcCC---cccc---cCCc--cc-----ce-eeccccchh
Confidence 999775321 112 256788999999999999888887432 1110 0001 00 01 233333333
Q ss_pred c--CCC-C----CHHHHHHHHHHHHhCC-CcEEEeeeecCCCC-ChHHHHHHHHHHHHHHhcCCCeeEEEEEeeecC---
Q 036715 216 H--FTV-P----NLPLMRAIIDKMTTLK-LPIWLTEVDISSKL-SKEKQAVYLEQVLREGFSHPSVSGIMLWAALHP--- 283 (362)
Q Consensus 216 H--~~~-p----~~~~~~~~L~~~a~~g-lpI~iTE~dv~~~~-~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~--- 283 (362)
+ ... | +.......|+-....| +|+-+-|++.++.. .+..||.++-. +.++.. +-.|-.+|.|.+-
T Consensus 208 Y~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~--~lal~~-ggdGaLiwclsdf~~g 284 (587)
T COG3934 208 YRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWI--RLALDT-GGDGALIWCLSDFHLG 284 (587)
T ss_pred hhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhhhh--hhHHhh-cCCceEEEEecCCccC
Confidence 2 211 2 1122334566667789 99999999999853 34556655532 334543 4456788988542
Q ss_pred -----CCC----CcccccCCCCCcchHHHHHHHHHHhhc
Q 036715 284 -----NGC----YQMCLTDNNLQNLPAGDVVDKLLKECQ 313 (362)
Q Consensus 284 -----~g~----~~~gL~d~d~~~KPa~~~~~~li~ew~ 313 (362)
.+| ..+|+++.|..+|-++..+.++.++|.
T Consensus 285 sdd~ey~w~p~el~fgiIradgpek~~a~~~~~fsn~~k 323 (587)
T COG3934 285 SDDSEYTWGPMELEFGIIRADGPEKIDAMTLHIFSNNWK 323 (587)
T ss_pred CCCCCCccccccceeeeecCCCchhhhHHHHHHhccccc
Confidence 123 368999999999999999999988776
No 34
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=95.44 E-value=0.51 Score=45.59 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=105.9
Q ss_pred HHhcCcEEEEEEeecCCCCCCCccccCC---C-------hHHHHHHHHHHHHHHHHHccC---ceeEEEEecccccccc-
Q 036715 82 VRANKLIVRGHNIFWENPKYNPTWVRNL---T-------GFQLQSAVNSRIQSLMNKYKE---EFIHWDVSNEILHFDF- 147 (362)
Q Consensus 82 a~~~gi~v~GH~L~W~~~~~~P~W~~~~---~-------~~~~~~~~~~~i~~vv~ry~g---~v~~WDV~NE~~~~~~- 147 (362)
+..+|+.|-.-+ | ..|.|++.- . ..+-.+.+.+|+.+.+.-|+. .+++--|=|||.-...
T Consensus 111 ~in~g~ivfASP--W----spPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~ 184 (433)
T COG5520 111 AINPGMIVFASP--W----SPPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTY 184 (433)
T ss_pred hcCCCcEEEecC--C----CCchhhhhccCcCCccccccchhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCC
Confidence 345566665433 3 357888641 1 123456778888888887764 5888999999975422
Q ss_pred -cccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHH
Q 036715 148 -YEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMR 226 (362)
Q Consensus 148 -~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~ 226 (362)
|---+.+|..+-+-+.++-..-++++++-|-.- ..+.- .+.. +.+= .+-..+|++|.|.+-+.- .+.-
T Consensus 185 d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~-~~~~~----~dp~---lnDp-~a~a~~~ilg~H~Ygg~v--~~~p 253 (433)
T COG5520 185 DWCWWTPQEELRFMRQYLASINAEMRVIIPESFK-DLPNM----SDPI---LNDP-KALANMDILGTHLYGGQV--SDQP 253 (433)
T ss_pred CcccccHHHHHHHHHHhhhhhccccEEecchhcc-ccccc----cccc---ccCH-hHhcccceeEeeeccccc--ccch
Confidence 222234566666667777777788888866432 11110 0000 0000 011358999997775431 1111
Q ss_pred HHHHHHHhCCCcEEEeeeecCCC--CChHHHHHHHHHHHHHHhcCCCeeEEEEEeeecCC
Q 036715 227 AIIDKMTTLKLPIWLTEVDISSK--LSKEKQAVYLEQVLREGFSHPSVSGIMLWAALHPN 284 (362)
Q Consensus 227 ~~L~~~a~~glpI~iTE~dv~~~--~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~ 284 (362)
..|.+....|+.||.||.-.... .+..+.+-.+..-+-.+.-..++.|+.||.+.-..
T Consensus 254 ~~lak~~~~gKdlwmte~y~~esd~~s~dr~~~~~~~hi~~gm~~gg~~ayv~W~i~~~~ 313 (433)
T COG5520 254 YPLAKQKPAGKDLWMTECYPPESDPNSADREALHVALHIHIGMTEGGFQAYVWWNIRLDY 313 (433)
T ss_pred hhHhhCCCcCCceEEeecccCCCCCCcchHHHHHHHHHHHhhccccCccEEEEEEEeecc
Confidence 23444445699999999877642 11222233333334445445789999999986543
No 35
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=95.44 E-value=0.19 Score=50.21 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=72.7
Q ss_pred HhcCCeeeeCCCccccccccCC----Ccc---cchhHHHHHHHHHhcCcEEE--EEEeecCCCCCCCccccC-CC-hHHH
Q 036715 46 VKRFNAAVFENELKWYATEAEQ----GKV---NYTVADQMMEFVRANKLIVR--GHNIFWENPKYNPTWVRN-LT-GFQL 114 (362)
Q Consensus 46 ~~~Fn~~t~en~~kW~~~Ep~~----G~~---~~~~~D~~v~~a~~~gi~v~--GH~L~W~~~~~~P~W~~~-~~-~~~~ 114 (362)
..+||.++++ +-|-.+++.. ... .....|++|+||++.||.|. -|..-+........|..+ .+ .++.
T Consensus 84 ~~G~n~VRiP--i~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~~~~~ 161 (407)
T COG2730 84 SAGFNAVRIP--IGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDYKEENEN 161 (407)
T ss_pred HcCCcEEEcc--cchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccccccchh
Confidence 4689999999 7755554432 211 12268999999999999886 233322222223344332 11 2344
Q ss_pred HHHHHHHHHHHHHHccC--ceeEEEEeccccc---ccccccccChHHHHHHHHHHH-hhCCCc
Q 036715 115 QSAVNSRIQSLMNKYKE--EFIHWDVSNEILH---FDFYEQRLGPKAALHFFQTAH-QSDPLA 171 (362)
Q Consensus 115 ~~~~~~~i~~vv~ry~g--~v~~WDV~NE~~~---~~~~~~~lG~~~~~~af~~Ar-~adP~a 171 (362)
.++..+..+.+++||+. .|...|++|||.. ...|.... ..|+..+| +....+
T Consensus 162 ~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~-----~~A~~~v~~~i~~~~ 219 (407)
T COG2730 162 VEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGD-----DEAYDVVRNAILSNA 219 (407)
T ss_pred HHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccch-----HHHHHHHHhhhhhcC
Confidence 56777888999999996 4778899999973 23332211 56666663 444444
No 36
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=95.03 E-value=0.083 Score=50.26 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=102.6
Q ss_pred CCceEEeecCC--CCCCh---hHHHHH-HhcCCeeeeCCCcccccc--------cc----CCCccc--------chhHHH
Q 036715 24 DFPLGSAIAST--ILGNL---PYQKWF-VKRFNAAVFENELKWYAT--------EA----EQGKVN--------YTVADQ 77 (362)
Q Consensus 24 ~f~fG~a~~~~--~~~~~---~y~~~~-~~~Fn~~t~en~~kW~~~--------Ep----~~G~~~--------~~~~D~ 77 (362)
=|.+|...=.. .+..+ .|.+.. .+.||.+.+---.+|... .| .++.+| |+.+|+
T Consensus 13 ff~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~ 92 (289)
T PF13204_consen 13 FFWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDR 92 (289)
T ss_dssp --EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHH
T ss_pred EeehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHH
Confidence 48889543211 12222 233333 468998887533444433 11 111233 445899
Q ss_pred HHHHHHhcCcEEEEEEeecCCCCCCC-ccccC---CChHHHHHHHHHHHHHHHHHccCce-eEEEEeccccccccccccc
Q 036715 78 MMEFVRANKLIVRGHNIFWENPKYNP-TWVRN---LTGFQLQSAVNSRIQSLMNKYKEEF-IHWDVSNEILHFDFYEQRL 152 (362)
Q Consensus 78 ~v~~a~~~gi~v~GH~L~W~~~~~~P-~W~~~---~~~~~~~~~~~~~i~~vv~ry~g~v-~~WDV~NE~~~~~~~~~~l 152 (362)
+|+.|.+.||.+- -.++|+.+ +.| .|-.. +++ +..+.|++-|+.||+..- ..|.+-||- +....
T Consensus 93 ~i~~a~~~Gi~~~-lv~~wg~~-~~~~~Wg~~~~~m~~----e~~~~Y~~yv~~Ry~~~~NviW~l~gd~-----~~~~~ 161 (289)
T PF13204_consen 93 RIEKANELGIEAA-LVPFWGCP-YVPGTWGFGPNIMPP----ENAERYGRYVVARYGAYPNVIWILGGDY-----FDTEK 161 (289)
T ss_dssp HHHHHHHTT-EEE-EESS-HHH-HH-------TTSS-H----HHHHHHHHHHHHHHTT-SSEEEEEESSS-------TTS
T ss_pred HHHHHHHCCCeEE-EEEEECCc-cccccccccccCCCH----HHHHHHHHHHHHHHhcCCCCEEEecCcc-----CCCCc
Confidence 9999999999984 67788432 233 47542 223 346789999999999862 569999997 22223
Q ss_pred ChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeec-cCCC-C-CHHHHHHHH
Q 036715 153 GPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQG-HFTV-P-NLPLMRAII 229 (362)
Q Consensus 153 G~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~-H~~~-p-~~~~~~~~L 229 (362)
-.++...+.+.+|+.||...+-+-..+. ......| .+ .--+|-+.+|+ |-.. . ....+-. -
T Consensus 162 ~~~~w~~~~~~i~~~dp~~L~T~H~~~~-------~~~~~~~-------~~-~~Wldf~~~Qsgh~~~~~~~~~~~~~-~ 225 (289)
T PF13204_consen 162 TRADWDAMARGIKENDPYQLITIHPCGR-------TSSPDWF-------HD-EPWLDFNMYQSGHNRYDQDNWYYLPE-E 225 (289)
T ss_dssp SHHHHHHHHHHHHHH--SS-EEEEE-BT-------EBTHHHH-------TT--TT--SEEEB--S--TT--THHHH---H
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEeCCCC-------CCcchhh-------cC-CCcceEEEeecCCCcccchHHHHHhh-h
Confidence 3578889999999999988333322211 0112222 11 12378888886 4322 1 1222201 1
Q ss_pred HHHH-hCCCcEEEeeeecCCC---CCh---HHHH-HHHHHHHHHHhcCCCeeEEEE
Q 036715 230 DKMT-TLKLPIWLTEVDISSK---LSK---EKQA-VYLEQVLREGFSHPSVSGIML 277 (362)
Q Consensus 230 ~~~a-~~glpI~iTE~dv~~~---~~~---~~QA-~~~~~~~~~~~s~p~v~gi~~ 277 (362)
..++ ...+||...|...-.. ... ...+ +.-+++...+|+-. -.|++.
T Consensus 226 ~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa-~aG~tY 280 (289)
T PF13204_consen 226 FDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA-YAGHTY 280 (289)
T ss_dssp HHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT---SEEEE
T ss_pred hhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC-CccccC
Confidence 3333 5689999999876431 111 1222 34445666777633 246554
No 37
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=94.34 E-value=0.032 Score=54.87 Aligned_cols=88 Identities=15% Similarity=0.293 Sum_probs=59.4
Q ss_pred HHHHHhcCCeeeeCCCccccccccC-CCcccchhHHHHHHHHHhcCcEEEEEEeecCCC---------CCCCccccC---
Q 036715 42 QKWFVKRFNAAVFENELKWYATEAE-QGKVNYTVADQMMEFVRANKLIVRGHNIFWENP---------KYNPTWVRN--- 108 (362)
Q Consensus 42 ~~~~~~~Fn~~t~en~~kW~~~Ep~-~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~---------~~~P~W~~~--- 108 (362)
+++-......|..+ .=|+.+|++ |++|||+..+++.+.+++.|++++- +|..|.- -.+|.|+..
T Consensus 23 ~~LK~~GV~GVmvd--vWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~-vmsfH~cGgNvgD~~~IpLP~Wv~~~~~ 99 (402)
T PF01373_consen 23 RALKSAGVDGVMVD--VWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQV-VMSFHQCGGNVGDDCNIPLPSWVWEIGK 99 (402)
T ss_dssp HHHHHTTEEEEEEE--EEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEE-EEE-S-BSSSTTSSSEB-S-HHHHHHHH
T ss_pred HHHHHcCCcEEEEE--eEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEeeecCCCCCCCccCCcCCHHHHhccc
Confidence 34444578888877 999999997 8999999999999999999999984 4555531 037899853
Q ss_pred -----------------CC----hHHHHHHHHHHHHHHHHHccCce
Q 036715 109 -----------------LT----GFQLQSAVNSRIQSLMNKYKEEF 133 (362)
Q Consensus 109 -----------------~~----~~~~~~~~~~~i~~vv~ry~g~v 133 (362)
+| .-. .+...+|+++..++|+..+
T Consensus 100 ~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 100 KDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp HSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHH
T ss_pred cCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHH
Confidence 12 123 6777888888888877543
No 38
>PLN00197 beta-amylase; Provisional
Probab=94.21 E-value=0.43 Score=48.63 Aligned_cols=62 Identities=16% Similarity=0.310 Sum_probs=50.6
Q ss_pred HHHhcCCeeeeCCCcccccccc-CCCcccchhHHHHHHHHHhcCcEEEEEEeecCC------C---CCCCccccC
Q 036715 44 WFVKRFNAAVFENELKWYATEA-EQGKVNYTVADQMMEFVRANKLIVRGHNIFWEN------P---KYNPTWVRN 108 (362)
Q Consensus 44 ~~~~~Fn~~t~en~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~------~---~~~P~W~~~ 108 (362)
+-.....-|..+ .=|+-+|+ .|++|||+...++++.+++.|++++- +|-+|. . -.+|.|+..
T Consensus 136 LK~~GVdGVmvD--vWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~-VmSFHqCGGNVGD~~~IpLP~WV~~ 207 (573)
T PLN00197 136 LKSAGVEGIMMD--VWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQA-VMSFHQCGGNVGDSCTIPLPKWVVE 207 (573)
T ss_pred HHHcCCCEEEEe--eeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHHH
Confidence 334678889888 99999998 89999999999999999999999984 566663 0 028999864
No 39
>PLN02161 beta-amylase
Probab=94.02 E-value=0.43 Score=48.21 Aligned_cols=63 Identities=13% Similarity=0.322 Sum_probs=51.0
Q ss_pred HHHHhcCCeeeeCCCcccccccc-CCCcccchhHHHHHHHHHhcCcEEEEEEeecCC------CC---CCCccccC
Q 036715 43 KWFVKRFNAAVFENELKWYATEA-EQGKVNYTVADQMMEFVRANKLIVRGHNIFWEN------PK---YNPTWVRN 108 (362)
Q Consensus 43 ~~~~~~Fn~~t~en~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~------~~---~~P~W~~~ 108 (362)
.+-......|..+ .=|+-+|+ .|++|||+...++++.+++.|++++- +|-+|. .. .+|.|+..
T Consensus 125 ~LK~~GVdGVmvD--VWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNvGd~~~IpLP~WV~~ 197 (531)
T PLN02161 125 ALKLAGVHGIAVE--VWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHV-ALCFHSNMHLFGGKGGISLPLWIRE 197 (531)
T ss_pred HHHHcCCCEEEEE--eeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCccCccCCHHHHh
Confidence 3334678889988 99999998 89999999999999999999999984 556664 11 28999863
No 40
>PLN02801 beta-amylase
Probab=93.89 E-value=0.23 Score=50.04 Aligned_cols=63 Identities=14% Similarity=0.343 Sum_probs=50.6
Q ss_pred HHHHhcCCeeeeCCCcccccccc-CCCcccchhHHHHHHHHHhcCcEEEEEEeecCC------CC---CCCccccC
Q 036715 43 KWFVKRFNAAVFENELKWYATEA-EQGKVNYTVADQMMEFVRANKLIVRGHNIFWEN------PK---YNPTWVRN 108 (362)
Q Consensus 43 ~~~~~~Fn~~t~en~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~------~~---~~P~W~~~ 108 (362)
++-......|..+ .=|+-+|+ .|++|||+...++++.+++.|++++- +|-+|. .. .+|.|+..
T Consensus 45 ~LK~~GVdGVmvD--VWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~~ 117 (517)
T PLN02801 45 RLKEAGVDGVMVD--VWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQA-IMSFHQCGGNVGDAVNIPIPQWVRD 117 (517)
T ss_pred HHHHcCCCEEEEe--eeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHHH
Confidence 3345678899988 99999998 69999999999999999999999984 556663 00 27999863
No 41
>PLN02803 beta-amylase
Probab=93.55 E-value=0.56 Score=47.65 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=50.9
Q ss_pred HHHHhcCCeeeeCCCcccccccc-CCCcccchhHHHHHHHHHhcCcEEEEEEeecCC-------C--CCCCccccC
Q 036715 43 KWFVKRFNAAVFENELKWYATEA-EQGKVNYTVADQMMEFVRANKLIVRGHNIFWEN-------P--KYNPTWVRN 108 (362)
Q Consensus 43 ~~~~~~Fn~~t~en~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~-------~--~~~P~W~~~ 108 (362)
.+-.....-|.++ .=|+-+|+ .|++|||+...++++.+++.|++++- +|-+|. . -.+|.|+..
T Consensus 115 ~LK~~GVdGVmvD--VWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~e 187 (548)
T PLN02803 115 ALRSAGVEGVMVD--AWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQV-VMSFHQCGGNVGDSCSIPLPPWVLE 187 (548)
T ss_pred HHHHcCCCEEEEE--eeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHHH
Confidence 3334678899988 99999998 59999999999999999999999984 566663 0 027999864
No 42
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.21 E-value=2.9 Score=40.29 Aligned_cols=156 Identities=8% Similarity=-0.016 Sum_probs=88.5
Q ss_pred HHHHHHHhcCcEEEEEEeecCCCCC-----------CCccccC------------CChHHHHHHHHHHHHHHHH-HccC-
Q 036715 77 QMMEFVRANKLIVRGHNIFWENPKY-----------NPTWVRN------------LTGFQLQSAVNSRIQSLMN-KYKE- 131 (362)
Q Consensus 77 ~~v~~a~~~gi~v~GH~L~W~~~~~-----------~P~W~~~------------~~~~~~~~~~~~~i~~vv~-ry~g- 131 (362)
+-++.+++.|..|.+..-+=....+ .|+|+-. +..++.++.+.++++.++. -|.|
T Consensus 85 ~~i~~Lk~~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~kGfDGv 164 (315)
T TIGR01370 85 EEIVRAAAAGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQGFDGV 164 (315)
T ss_pred HHHHHHHhCCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHcCCCeE
Confidence 3466788899888765433111111 2233221 2245577778888877754 4665
Q ss_pred ---ceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEee-cCCCccCCCccchhHHHHHHHHHHHHHcCCc
Q 036715 132 ---EFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMN-EYNVVETCSDVNSMVDSYISRLRELRRSGVS 207 (362)
Q Consensus 132 ---~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~N-dy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~ 207 (362)
.+++|.-+++..........---+++....+.||+..|+++|+.| ++.+++... ..+. ..
T Consensus 165 fLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~~------g~~~----------~~ 228 (315)
T TIGR01370 165 YLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDDH------GGLA----------AT 228 (315)
T ss_pred eeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhccc------cchh----------hh
Confidence 466666555542110000000014667777888999999998866 444332100 0111 14
Q ss_pred ccEEEeeccCCC----CC---HHHHHHHHHHHHhCCCcEEEeeeecCC
Q 036715 208 TDGIGLQGHFTV----PN---LPLMRAIIDKMTTLKLPIWLTEVDISS 248 (362)
Q Consensus 208 iDgIG~q~H~~~----p~---~~~~~~~L~~~a~~glpI~iTE~dv~~ 248 (362)
||||+..+=|.. .+ .......|.++...|+||.+.|+.-+.
T Consensus 229 idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~ 276 (315)
T TIGR01370 229 VSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVLTVDYVDDG 276 (315)
T ss_pred ceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 899988875532 12 234556677777779999999997653
No 43
>PLN02705 beta-amylase
Probab=92.43 E-value=0.96 Score=46.66 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=51.0
Q ss_pred HHHHhcCCeeeeCCCcccccccc-CCCcccchhHHHHHHHHHhcCcEEEEEEeecCC-------CC--CCCccccC
Q 036715 43 KWFVKRFNAAVFENELKWYATEA-EQGKVNYTVADQMMEFVRANKLIVRGHNIFWEN-------PK--YNPTWVRN 108 (362)
Q Consensus 43 ~~~~~~Fn~~t~en~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~-------~~--~~P~W~~~ 108 (362)
.+-.....-|.++ +=|+-+|+ .+++|||+...++++.+++.|++++- +|.+|. .. .+|.|+..
T Consensus 276 aLK~aGVdGVmvD--VWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv-VmSFHqCGGNVGD~~~IPLP~WV~e 348 (681)
T PLN02705 276 HMKSLNVDGVVVD--CWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQV-VMAFHEYGGNASGNVMISLPQWVLE 348 (681)
T ss_pred HHHHcCCCEEEEe--eeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEeeccCCCCCCcccccCCHHHHH
Confidence 3334678899988 99999998 79999999999999999999999984 566663 00 27999863
No 44
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=92.19 E-value=0.47 Score=35.49 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=29.5
Q ss_pred ceeeeCCCcEEEEeeEE-----EEEEeCC-eeeEE-EEEEecCCCeeEEEEeC
Q 036715 317 VTGHTDAHGSYSFYGFL-----VSVKYGN-RTANS-TFSLCRGDETRHVTIRL 362 (362)
Q Consensus 317 ~~~~td~~G~~~~~gf~-----v~v~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 362 (362)
.+..||++|.|.|++-. |+|++++ ....+ .+.|..+..+ .+.|+|
T Consensus 30 ~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~-~~~i~L 81 (82)
T PF13620_consen 30 YTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQTT-TVDITL 81 (82)
T ss_dssp CEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSEE-E--EEE
T ss_pred EEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCEE-EEEEEE
Confidence 57899999999999443 8999988 33443 5888887654 566654
No 45
>PLN02905 beta-amylase
Probab=92.10 E-value=1.1 Score=46.27 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=50.5
Q ss_pred HHHhcCCeeeeCCCcccccccc-CCCcccchhHHHHHHHHHhcCcEEEEEEeecCC------C---CCCCccccC
Q 036715 44 WFVKRFNAAVFENELKWYATEA-EQGKVNYTVADQMMEFVRANKLIVRGHNIFWEN------P---KYNPTWVRN 108 (362)
Q Consensus 44 ~~~~~Fn~~t~en~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~------~---~~~P~W~~~ 108 (362)
+-.....-|.++ .=|+-+|+ .|++|||+...++++.+++.|++++- +|-+|. . -.+|.|+..
T Consensus 295 LK~aGVdGVmvD--VWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqv-VMSFHqCGGNVGD~~~IPLP~WV~e 366 (702)
T PLN02905 295 LKSINVDGVKVD--CWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQV-VMSFHECGGNVGDDVCIPLPHWVAE 366 (702)
T ss_pred HHHcCCCEEEEe--eeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHHH
Confidence 334678889888 99999998 78999999999999999999999984 566663 0 028999864
No 46
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=91.88 E-value=0.75 Score=46.82 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=68.6
Q ss_pred cCCeeeeCCCccccccccCC---Ccccchh---HHHHHHHHHhcCcEEEEEEeecCCCCCCCccccC----CChHHHHHH
Q 036715 48 RFNAAVFENELKWYATEAEQ---GKVNYTV---ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRN----LTGFQLQSA 117 (362)
Q Consensus 48 ~Fn~~t~en~~kW~~~Ep~~---G~~~~~~---~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~----~~~~~~~~~ 117 (362)
++++-++. +.|..+-|.- +..|.+. .-.+++-+.+|||+..- | ++|- .+|.++.. +-.+++.+.
T Consensus 104 gv~afRFS--IsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~V-T-LfHw--DlPq~LeDeYgGwLn~~ived 177 (524)
T KOG0626|consen 104 GVDAFRFS--ISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFV-T-LFHW--DLPQALEDEYGGWLNPEIVED 177 (524)
T ss_pred CCCeEEEE--eehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEE-E-EecC--CCCHHHHHHhccccCHHHHHH
Confidence 56666666 9999999853 3355554 34789999999999864 3 3332 27888764 224557788
Q ss_pred HHHHHHHHHHHccCceeEEEEeccccc
Q 036715 118 VNSRIQSLMNKYKEEFIHWDVSNEILH 144 (362)
Q Consensus 118 ~~~~i~~vv~ry~g~v~~WDV~NE~~~ 144 (362)
+.+|.+-.-++|++||+.|=-.|||..
T Consensus 178 F~~yA~~CF~~fGDrVK~WiT~NEP~v 204 (524)
T KOG0626|consen 178 FRDYADLCFQEFGDRVKHWITFNEPNV 204 (524)
T ss_pred HHHHHHHHHHHhcccceeeEEecccce
Confidence 999999999999999999999999973
No 47
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=91.86 E-value=0.4 Score=46.12 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCcEEEeeeecCCCCC----hHHHHHHHHHHHHHHh----cCCC-eeEEEEEeeecC----CC--CC
Q 036715 223 PLMRAIIDKMTTLKLPIWLTEVDISSKLS----KEKQAVYLEQVLREGF----SHPS-VSGIMLWAALHP----NG--CY 287 (362)
Q Consensus 223 ~~~~~~L~~~a~~glpI~iTE~dv~~~~~----~~~QA~~~~~~~~~~~----s~p~-v~gi~~Wg~~d~----~g--~~ 287 (362)
+.+..+|++++..++||+|||.++++..+ .+..+.+.+++++.+. ..|+ -..+.++.+.|- .. +.
T Consensus 214 da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~ 293 (310)
T PF00332_consen 214 DAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVER 293 (310)
T ss_dssp HHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGG
T ss_pred HHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccc
Confidence 34455555555567899999999998532 3444556666666554 1343 223344444442 11 45
Q ss_pred cccccCCCCCcc
Q 036715 288 QMCLTDNNLQNL 299 (362)
Q Consensus 288 ~~gL~d~d~~~K 299 (362)
++||++.|.++|
T Consensus 294 ~wGlf~~d~~~k 305 (310)
T PF00332_consen 294 HWGLFYPDGTPK 305 (310)
T ss_dssp G--SB-TTSSBS
T ss_pred eeeeECCCCCee
Confidence 899999998766
No 48
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.37 E-value=0.42 Score=49.62 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=80.0
Q ss_pred CCceEEeecCCCCCChhHHHHH----HhcCCeeeeCCCccccccccCCCcccchh-HH--HHHHHHHhcCcEEE--EEEe
Q 036715 24 DFPLGSAIASTILGNLPYQKWF----VKRFNAAVFENELKWYATEAEQGKVNYTV-AD--QMMEFVRANKLIVR--GHNI 94 (362)
Q Consensus 24 ~f~fG~a~~~~~~~~~~y~~~~----~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~-~D--~~v~~a~~~gi~v~--GH~L 94 (362)
...|...+|.-+..-+.+.+++ .-.+|.+..- .-|.-.||++|+|+|+. .| +.+..+.++|+-|. ..+-
T Consensus 34 ~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtY--VfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPy 111 (649)
T KOG0496|consen 34 FILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTY--VFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPY 111 (649)
T ss_pred eEEEEeccccccCChhhhHHHHHHHHhcCCceeeee--eecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCCCe
Confidence 3466677776554433344433 3579998876 99999999999999994 34 55777888998664 2222
Q ss_pred ---ecCCCCCCCccccCC-------ChHHHHHHHHHHHHHHHHHc-------cCceeEEEEecccc
Q 036715 95 ---FWENPKYNPTWVRNL-------TGFQLQSAVNSRIQSLMNKY-------KEEFIHWDVSNEIL 143 (362)
Q Consensus 95 ---~W~~~~~~P~W~~~~-------~~~~~~~~~~~~i~~vv~ry-------~g~v~~WDV~NE~~ 143 (362)
-|.- ...|-|+... +.+..+.+|+++.+.++.+- +|-|..=.|=||=-
T Consensus 112 IcaEw~~-GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 112 ICAEWNF-GGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred EEecccC-CCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 2543 2578666543 34568888888888888743 36788889989853
No 49
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=88.71 E-value=15 Score=31.85 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=83.0
Q ss_pred CCChhHHHHH----HhcCCeeeeCCCcccc-ccccCCC---cc---cchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCc
Q 036715 36 LGNLPYQKWF----VKRFNAAVFENELKWY-ATEAEQG---KV---NYTVADQMMEFVRANKLIVRGHNIFWENPKYNPT 104 (362)
Q Consensus 36 ~~~~~y~~~~----~~~Fn~~t~en~~kW~-~~Ep~~G---~~---~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~ 104 (362)
++...+++.| .-+++.+++...-.-. ..-|+.+ .+ .-+..+.+++.|.+.||+|.-..- ..|.
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~------~~~~ 90 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY------FDPD 90 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC------CCch
Confidence 4445555555 3478888765322222 1234433 11 113578999999999999984332 2345
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHccC--ceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCC
Q 036715 105 WVRNLTGFQLQSAVNSRIQSLMNKYKE--EFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179 (362)
Q Consensus 105 W~~~~~~~~~~~~~~~~i~~vv~ry~g--~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~ 179 (362)
|....+.+...+.-..-++++.++|+. .+..|=+-.|+...+ |.. .+..+..-+.+++..|+..+.|.-|.
T Consensus 91 ~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~-~~~---~~~~~~l~~~lk~~s~~~Pv~ISpf~ 163 (166)
T PF14488_consen 91 YWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN-WNA---PERFALLGKYLKQISPGKPVMISPFI 163 (166)
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc-cch---HHHHHHHHHHHHHhCCCCCeEEecCc
Confidence 555433332222223356778888876 589999999986543 322 46667777888999999888887664
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=88.53 E-value=17 Score=34.89 Aligned_cols=179 Identities=17% Similarity=0.227 Sum_probs=101.7
Q ss_pred HhcCCeeeeC-----CCccccccccC-------CCc-ccchhHHHHHHHHHhcCcEEEEEEeecCCC--------CCCCc
Q 036715 46 VKRFNAAVFE-----NELKWYATEAE-------QGK-VNYTVADQMMEFVRANKLIVRGHNIFWENP--------KYNPT 104 (362)
Q Consensus 46 ~~~Fn~~t~e-----n~~kW~~~Ep~-------~G~-~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~--------~~~P~ 104 (362)
..+||.+-+. ..++-+.++|. +|. ..|+.+..+|+-|.++||+|++=. -.... ...|.
T Consensus 30 ~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~-~~~~~~~~~~~~~~~~p~ 108 (311)
T PF02638_consen 30 SAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWF-RVGFNAPDVSHILKKHPE 108 (311)
T ss_pred HcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEE-EeecCCCchhhhhhcCch
Confidence 3578887664 12233444442 222 348889999999999999997532 11100 12345
Q ss_pred ccc--------C----------CC--hHHHHHHHHHHHHHHHHHcc-CceeEEE-Ee---ccc----ccccccccccC--
Q 036715 105 WVR--------N----------LT--GFQLQSAVNSRIQSLMNKYK-EEFIHWD-VS---NEI----LHFDFYEQRLG-- 153 (362)
Q Consensus 105 W~~--------~----------~~--~~~~~~~~~~~i~~vv~ry~-g~v~~WD-V~---NE~----~~~~~~~~~lG-- 153 (362)
|+. . ++ .++.++.+.+-|++++++|. +=| ++| .. .+. .....|....|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGI-hlDdy~yp~~~~g~~~~~~~~y~~~~g~~ 187 (311)
T PF02638_consen 109 WFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGI-HLDDYFYPPPSFGYDFPDVAAYEKYTGKD 187 (311)
T ss_pred hheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeE-EecccccccccCCCCCccHHHHHHhcCcC
Confidence 532 1 12 26799999999999999996 111 333 11 000 00001221111
Q ss_pred ------------------hHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeec
Q 036715 154 ------------------PKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQG 215 (362)
Q Consensus 154 ------------------~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~ 215 (362)
.++++..++.+|+..|++++-+.-++.... ....+++-....+++| .||-|=.|.
T Consensus 188 ~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~------~y~~~~qD~~~W~~~G-~iD~i~Pq~ 260 (311)
T PF02638_consen 188 PFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNS------AYDDYYQDWRNWLKEG-YIDYIVPQI 260 (311)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhh------hhhheeccHHHHHhcC-CccEEEeee
Confidence 135678899999999999998765443311 1223333344556666 699999999
Q ss_pred cCC-CCC-HHHHHHHHHHHH
Q 036715 216 HFT-VPN-LPLMRAIIDKMT 233 (362)
Q Consensus 216 H~~-~p~-~~~~~~~L~~~a 233 (362)
+.. ... ...+...+...+
T Consensus 261 Y~~~~~~~~~~~~~~~~~w~ 280 (311)
T PF02638_consen 261 YWSDFSHFTAPYEQLAKWWA 280 (311)
T ss_pred cccccchhHHHHHHHHHHHH
Confidence 986 332 234444444443
No 51
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=87.58 E-value=20 Score=37.91 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=75.4
Q ss_pred HHHHHHHhcCcEEEEEEeecCCCCCCCccccCC---C--hHH-HHHHHHHHHHHHHHHccCceeEEEEeccccccccccc
Q 036715 77 QMMEFVRANKLIVRGHNIFWENPKYNPTWVRNL---T--GFQ-LQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFDFYEQ 150 (362)
Q Consensus 77 ~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~---~--~~~-~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~~~~~ 150 (362)
.+++-|++++=.++--.|-|. .|+|+..- + ... ....+.++|......|+=.|+.-.+|||-..+
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~----~PgW~~~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~~----- 186 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWG----FPGWVGNGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGFD----- 186 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-----B-GGGGTTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--------
T ss_pred hhHHHHHhhCCCCeEEEeccC----CCccccCCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCCC-----
Confidence 467778877643443447796 79999752 1 112 22345577777777777688888999996431
Q ss_pred ccChHHHHHHHHHHH-hhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHH
Q 036715 151 RLGPKAALHFFQTAH-QSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAII 229 (362)
Q Consensus 151 ~lG~~~~~~af~~Ar-~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L 229 (362)
.+|++..=+... +..-++||+.+|-. .+. ....++. =.+|.+ .+|.||.|.- ...+... .
T Consensus 187 ---~~~ik~lr~~l~~~gy~~vkiva~D~~-~~~------~~~~m~~-D~~l~~---avdvig~HY~-~~~~~~~---a- 247 (669)
T PF02057_consen 187 ---VNYIKWLRKALNSNGYNKVKIVAADNN-WES------ISDDMLS-DPELRN---AVDVIGYHYP-GTYSSKN---A- 247 (669)
T ss_dssp ---HHHHHHHHHHHHHTT-TT-EEEEEEE--STT------HHHHHHH--HHHHH---H--EEEEES--TT---HH---H-
T ss_pred ---hhHHHHHHHHHhhccccceEEEEeCCC-ccc------hhhhhhc-CHHHHh---cccEeccccC-CCCcHHH---H-
Confidence 355433222222 34556999998833 211 1122211 123333 4899999742 2121111 1
Q ss_pred HHHHhCCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEeeec
Q 036715 230 DKMTTLKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAALH 282 (362)
Q Consensus 230 ~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d 282 (362)
...|+|||-+|-...-. ...-+..+.+.+-.-+-.......+.|.+..
T Consensus 248 ---~~~~K~lW~SE~~s~~~--~~~g~g~~ar~ln~~yv~g~mT~~I~w~lVa 295 (669)
T PF02057_consen 248 ---KLTGKPLWSSEDYSTFN--YNVGAGCWARILNRNYVNGRMTAYINWPLVA 295 (669)
T ss_dssp ---HHHT-EEEEEEEE-S-T--THHHHHHHHHHHHHHHHHH--SEEEEE-SEE
T ss_pred ---HHhCCCeEEcCCccccc--CcCchHHHHHHHHhhhhccceEEEEeehhhh
Confidence 13599999999544321 2222223333332222234577778887643
No 52
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=87.38 E-value=1.2 Score=41.82 Aligned_cols=33 Identities=30% Similarity=0.316 Sum_probs=25.5
Q ss_pred CCcEEEeeeecCCC---------------------------CChHHHHHHHHHHHHHHhc
Q 036715 236 KLPIWLTEVDISSK---------------------------LSKEKQAVYLEQVLREGFS 268 (362)
Q Consensus 236 glpI~iTE~dv~~~---------------------------~~~~~QA~~~~~~~~~~~s 268 (362)
.+|||+||++.++- .++-.|..+|+.++..+-+
T Consensus 206 sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~~ 265 (299)
T PF13547_consen 206 SKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWDD 265 (299)
T ss_pred CcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 68999999999751 1456799999988876554
No 53
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=86.61 E-value=0.64 Score=31.54 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=18.2
Q ss_pred CEEecCCCCcCCCCeEEEEec
Q 036715 1 MHVTNGHGDILQGAVIKIKQV 21 (362)
Q Consensus 1 i~v~d~~g~p~~~a~v~v~~~ 21 (362)
|++.|++|+|++++.+.+..-
T Consensus 19 Vt~kda~G~pv~n~~f~l~r~ 39 (47)
T PF05688_consen 19 VTVKDANGNPVPNAPFTLTRG 39 (47)
T ss_pred EEEECCCCCCcCCceEEEEec
Confidence 579999999999999988643
No 54
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=86.02 E-value=2.1 Score=39.38 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcc-----CceeEEEEeccccc-----cccccccc-ChHHHHHHH---HHHHhhCCCceEEe
Q 036715 117 AVNSRIQSLMNKYK-----EEFIHWDVSNEILH-----FDFYEQRL-GPKAALHFF---QTAHQSDPLATLFM 175 (362)
Q Consensus 117 ~~~~~i~~vv~ry~-----g~v~~WDV~NE~~~-----~~~~~~~l-G~~~~~~af---~~Ar~adP~a~L~~ 175 (362)
.+.++|..++.+|+ +.|+.|.+=|||.. ...-...+ -+|++...+ +++|++||+|+++=
T Consensus 105 y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~G 177 (239)
T PF12891_consen 105 YMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFG 177 (239)
T ss_dssp EHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEee
Confidence 45566777777764 46999999999972 11111112 245655544 56678999999975
No 55
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=84.58 E-value=34 Score=33.63 Aligned_cols=199 Identities=14% Similarity=0.170 Sum_probs=106.9
Q ss_pred cCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCC---------------------CCCccc
Q 036715 48 RFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPK---------------------YNPTWV 106 (362)
Q Consensus 48 ~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~---------------------~~P~W~ 106 (362)
.|...+++ +||. |..|-..+-++++.+-++||.-.=-.--+|... -.|.|.
T Consensus 17 gfG~MRlp--~~~~------~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~ 88 (391)
T COG1453 17 GFGCMRLP--LKEQ------GSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWP 88 (391)
T ss_pred ccceeecc--cccC------CCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCCcc
Confidence 56677776 7775 777777888888888888886542211111110 133333
Q ss_pred cCCChHHHHHHHHHHHHHHHHHccC-ceeEEEEeccccccccccc--ccChHHHHHHHHHHHhhCCCceEEeecCCCccC
Q 036715 107 RNLTGFQLQSAVNSRIQSLMNKYKE-EFIHWDVSNEILHFDFYEQ--RLGPKAALHFFQTAHQSDPLATLFMNEYNVVET 183 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~i~~vv~ry~g-~v~~WDV~NE~~~~~~~~~--~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~ 183 (362)
. +.++.|+++..+-.+|++- .|+.+=+-|= +...|.. .+| +|+.++++--+-++-.=+|+....
T Consensus 89 ~-----~~~edm~r~fneqLekl~~Dy~D~yliH~l--~~e~~~k~~~~g------~~df~~kak~eGkIr~~GFSfHgs 155 (391)
T COG1453 89 V-----KDREDMERIFNEQLEKLGTDYIDYYLIHGL--NTETWEKIERLG------VFDFLEKAKAEGKIRNAGFSFHGS 155 (391)
T ss_pred c-----cCHHHHHHHHHHHHHHhCCchhhhhhhccc--cHHHHHHHHccC------hHHHHHHHHhcCcEEEeeecCCCC
Confidence 2 2355566777777777753 3333322110 0112221 122 345555544455555566776431
Q ss_pred CCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHHhCCCcEEEeeeecCC----CCChHHH----
Q 036715 184 CSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTTLKLPIWLTEVDISS----KLSKEKQ---- 255 (362)
Q Consensus 184 ~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~~glpI~iTE~dv~~----~~~~~~Q---- 255 (362)
.. .++++++.+ +.|-+-+|..+-...-....+.|+.-++.|++|.|-|=-=.. +..+..+
T Consensus 156 -------~e----~~~~iv~a~-~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~ 223 (391)
T COG1453 156 -------TE----VFKEIVDAY-PWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCR 223 (391)
T ss_pred -------HH----HHHHHHhcC-CcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHH
Confidence 22 245556655 689988887764322222256677777889999998732111 0112111
Q ss_pred HH-----HHHHHHHHHhcCCCeeEEEEEee
Q 036715 256 AV-----YLEQVLREGFSHPSVSGIMLWAA 280 (362)
Q Consensus 256 A~-----~~~~~~~~~~s~p~v~gi~~Wg~ 280 (362)
-. -.+-.++-+++||.|.-+ +=|.
T Consensus 224 ~~~~~~sP~~wa~R~~~shp~V~~v-lsGm 252 (391)
T COG1453 224 PASPKRSPAEWALRYLLSHPEVTTV-LSGM 252 (391)
T ss_pred hcCCCCCcHHHHHHHHhcCCCeEEE-ecCC
Confidence 11 134457788999999764 3344
No 56
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=82.45 E-value=1.1 Score=33.42 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=18.9
Q ss_pred EEecCCCCcCCCCeEEEEeccCCCce
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKDFPL 27 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~f~f 27 (362)
+|+|++|+||+||.|.+.........
T Consensus 5 ~V~d~~g~pv~~a~V~l~~~~~~~~~ 30 (82)
T PF13620_consen 5 TVTDATGQPVPGATVTLTDQDGGTVY 30 (82)
T ss_dssp EEEETTSCBHTT-EEEET--TTTECC
T ss_pred EEEcCCCCCcCCEEEEEEEeeCCCEE
Confidence 68999999999999999866555433
No 57
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=79.61 E-value=1.6 Score=33.75 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.7
Q ss_pred CEEecCCCCcCCCCeEEEEeccCC
Q 036715 1 MHVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 1 i~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
++|+|++|+|++|++|++.-...+
T Consensus 24 v~v~D~~Gnpv~~~~V~f~~~~~~ 47 (92)
T smart00634 24 ATVTDANGNPVAGQEVTFTTPSGG 47 (92)
T ss_pred EEEECCCCCCcCCCEEEEEECCCc
Confidence 579999999999999998876555
No 58
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=76.85 E-value=23 Score=34.53 Aligned_cols=92 Identities=11% Similarity=0.167 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcCcEEEEE--EeecCCCCCCCccccCC----------Ch--HH-HHHHHHHHHHHHHHHccCceeEEE
Q 036715 73 TVADQMMEFVRANKLIVRGH--NIFWENPKYNPTWVRNL----------TG--FQ-LQSAVNSRIQSLMNKYKEEFIHWD 137 (362)
Q Consensus 73 ~~~D~~v~~a~~~gi~v~GH--~L~W~~~~~~P~W~~~~----------~~--~~-~~~~~~~~i~~vv~ry~g~v~~WD 137 (362)
+..-++++.|+++||++--+ ..-|+. |.+.... .. ++ ..+.+...++++++||+-.+.-+|
T Consensus 138 Div~El~~A~rk~Glk~G~Y~S~~dw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 138 DIVGELADACRKYGLKFGLYYSPWDWHH----PDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp -HHHHHHHHHHHTT-EEEEEEESSSCCC----TTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEEEecchHhcC----cccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 34668999999999998543 223443 2222111 00 12 345888999999999943344456
Q ss_pred EecccccccccccccChHHHHHHHHHHHhhCCCceEEee
Q 036715 138 VSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMN 176 (362)
Q Consensus 138 V~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~N 176 (362)
..... ....--....++.+|+..|++.+.-+
T Consensus 214 g~~~~--------~~~~~~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 214 GGWPD--------PDEDWDSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp STTSC--------CCTHHHHHHHHHHHHHHSTTSEEECC
T ss_pred CCCCc--------cccccCHHHHHHHHHHhCCeEEEecc
Confidence 65543 11111237889999999998776544
No 59
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=75.53 E-value=13 Score=27.98 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=24.9
Q ss_pred ceeeeCCCcEEEEeeEE----EEEEeCC-eeeEEEEEEecC
Q 036715 317 VTGHTDAHGSYSFYGFL----VSVKYGN-RTANSTFSLCRG 352 (362)
Q Consensus 317 ~~~~td~~G~~~~~gf~----v~v~~~~-~~~~~~~~~~~~ 352 (362)
....||++|.|.+..=. +.+++.| ...+..+.+..+
T Consensus 27 ~~~~Td~~G~F~i~~~~g~~~l~is~~Gy~~~~~~i~~~~~ 67 (88)
T PF13715_consen 27 KGTVTDENGRFSIKLPEGDYTLKISYIGYETKTITISVNSN 67 (88)
T ss_pred ceEEECCCeEEEEEEcCCCeEEEEEEeCEEEEEEEEEecCC
Confidence 46799999999999322 8888887 444545555443
No 60
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=75.21 E-value=14 Score=37.87 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHh-C-CCcEEEeeeecCCCC----------ChHHHHHHHHHHHHHHh-----cCCCeeEEEEEeeecCC
Q 036715 222 LPLMRAIIDKMTT-L-KLPIWLTEVDISSKL----------SKEKQAVYLEQVLREGF-----SHPSVSGIMLWAALHPN 284 (362)
Q Consensus 222 ~~~~~~~L~~~a~-~-glpI~iTE~dv~~~~----------~~~~QA~~~~~~~~~~~-----s~p~v~gi~~Wg~~d~~ 284 (362)
+..|+..|+-... . +.||.|||-++.... .+....+|+...+..+. .--.|.|.+.|.+.|..
T Consensus 391 P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnf 470 (524)
T KOG0626|consen 391 PWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNF 470 (524)
T ss_pred cHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccch
Confidence 3468888888765 4 579999999887631 12334455555544333 22468999999997743
Q ss_pred ----C-CCcccccCC------CCCcchHHHHHHHHHHh
Q 036715 285 ----G-CYQMCLTDN------NLQNLPAGDVVDKLLKE 311 (362)
Q Consensus 285 ----g-~~~~gL~d~------d~~~KPa~~~~~~li~e 311 (362)
| ...+||+-- +..||-....++++|+.
T Consensus 471 Ew~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~ 508 (524)
T KOG0626|consen 471 EWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKG 508 (524)
T ss_pred hhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHcC
Confidence 2 236788754 34578889999999863
No 61
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=72.37 E-value=8.2 Score=37.22 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=13.0
Q ss_pred cchhHHHHHHHHHhcCcEEE
Q 036715 71 NYTVADQMMEFVRANKLIVR 90 (362)
Q Consensus 71 ~~~~~D~~v~~a~~~gi~v~ 90 (362)
.-+.-|++.+||++.|+.+.
T Consensus 107 t~~rwd~l~~F~~~tG~~li 126 (319)
T PF03662_consen 107 TMSRWDELNNFAQKTGLKLI 126 (319)
T ss_dssp -----HHHHHHHHHHT-EEE
T ss_pred chhHHHHHHHHHHHhCCEEE
Confidence 33457999999999999876
No 62
>PRK07534 methionine synthase I; Validated
Probab=66.90 E-value=53 Score=31.96 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhCCC---ceEEeecCCCc----cCCC--ccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHH
Q 036715 155 KAALHFFQTAHQSDPL---ATLFMNEYNVV----ETCS--DVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLM 225 (362)
Q Consensus 155 ~~~~~af~~Ar~adP~---a~L~~Ndy~~~----~~~~--~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~ 225 (362)
++.+.+.+.||++.-+ -.++.++.+.. ...+ +.......|..+++.|.+.| +|.|.+.. .|+..++
T Consensus 85 ~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~~qi~~l~~~g--vD~l~~ET---~p~l~E~ 159 (336)
T PRK07534 85 ELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAFHEQAEGLKAGG--ADVLWVET---ISAPEEI 159 (336)
T ss_pred HHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHHHHHHHHHHhCC--CCEEEEec---cCCHHHH
Confidence 4567788888876422 12344443221 1111 11123456777788887877 68876643 3577888
Q ss_pred HHHHHHHHhCCCcEEEe
Q 036715 226 RAIIDKMTTLKLPIWLT 242 (362)
Q Consensus 226 ~~~L~~~a~~glpI~iT 242 (362)
+.+++.+...++|+|++
T Consensus 160 ~a~~~~~~~~~~Pv~vS 176 (336)
T PRK07534 160 RAAAEAAKLAGMPWCGT 176 (336)
T ss_pred HHHHHHHHHcCCeEEEE
Confidence 88888888889999996
No 63
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=66.64 E-value=58 Score=32.33 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcCcEEEE-E-EeecCCCCCCCccccC-------CChHHHHHHH---HHHHHHHHHHccCceeEEEEec
Q 036715 73 TVADQMMEFVRANKLIVRG-H-NIFWENPKYNPTWVRN-------LTGFQLQSAV---NSRIQSLMNKYKEEFIHWDVSN 140 (362)
Q Consensus 73 ~~~D~~v~~a~~~gi~v~G-H-~L~W~~~~~~P~W~~~-------~~~~~~~~~~---~~~i~~vv~ry~g~v~~WDV~N 140 (362)
+..-++++.|+++||++-- | .+-|+. |.|... ...+...+.+ ...+++++++|+..+.-+|...
T Consensus 128 Div~el~~A~rk~Glk~G~Y~S~~DW~~----p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 128 DLVGELADAVRKRGLKFGLYHSLFDWFN----PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred chHHHHHHHHHHcCCeEEEEcCHHHhCC----CccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 4566889999999998743 2 234543 444211 0112233444 8999999999987666667643
Q ss_pred ccccccccccccChH-HHHHHHHHHHhhCCCc-eEEeec
Q 036715 141 EILHFDFYEQRLGPK-AALHFFQTAHQSDPLA-TLFMNE 177 (362)
Q Consensus 141 E~~~~~~~~~~lG~~-~~~~af~~Ar~adP~a-~L~~Nd 177 (362)
+.. +.. -....++.+|+..|++ .+++|+
T Consensus 204 ~~~---------~~~~~~~~l~~~~~~~qP~~~~vvvn~ 233 (384)
T smart00812 204 EAP---------DDYWRSKEFLAWLYNLSPVKDTVVVND 233 (384)
T ss_pred CCc---------cchhcHHHHHHHHHHhCCCCceEEEEc
Confidence 311 111 1467788899999987 456664
No 64
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=65.69 E-value=1.1e+02 Score=30.74 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHccCceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHH
Q 036715 117 AVNSRIQSLMNKYKEEFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYIS 196 (362)
Q Consensus 117 ~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~ 196 (362)
.++.||+..+..=-+-++-+|-+|-+.+ ++.+.+++|+.--.++..+. |.+ +| ....+.|++
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDAlND~RN------------l~~ai~a~kk~G~h~q~~i~-YT~--sP---vHt~e~yv~ 160 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDALNDVRN------------LKTAIKAAKKHGAHVQGTIS-YTT--SP---VHTLEYYVE 160 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechhccchhH------------HHHHHHHHHhcCceeEEEEE-ecc--CC---cccHHHHHH
Confidence 4667777776665566778888887643 47788899988777777665 443 22 234688999
Q ss_pred HHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHH-hCCCcEEEe
Q 036715 197 RLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMT-TLKLPIWLT 242 (362)
Q Consensus 197 ~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a-~~glpI~iT 242 (362)
++++|.+.|+ |-|.+----+.-++....+.+..+. .+++||.+-
T Consensus 161 ~akel~~~g~--DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lH 205 (472)
T COG5016 161 LAKELLEMGV--DSICIKDMAGLLTPYEAYELVKAIKKELPVPVELH 205 (472)
T ss_pred HHHHHHHcCC--CEEEeecccccCChHHHHHHHHHHHHhcCCeeEEe
Confidence 9999999885 6666543333323333333344432 567887764
No 65
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=65.54 E-value=32 Score=32.72 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHhhCCC---c--eEEeecCCCc-------cCCC----ccchhHHHHHHHHHHHHHcCCcccEEEeeccC
Q 036715 154 PKAALHFFQTAHQSDPL---A--TLFMNEYNVV-------ETCS----DVNSMVDSYISRLRELRRSGVSTDGIGLQGHF 217 (362)
Q Consensus 154 ~~~~~~af~~Ar~adP~---a--~L~~Ndy~~~-------~~~~----~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~ 217 (362)
.++.+.+.+.||++-.. . .++....+.. +..+ ....-.+.|..+++.|.+.| +|.|.+..-.
T Consensus 81 ~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~g--vD~l~~ET~~ 158 (305)
T PF02574_consen 81 EELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYLSGSEYPGDYGLSFEELRDFHREQAEALADAG--VDLLLFETMP 158 (305)
T ss_dssp HHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S--------CTTCTT-HHHHHHHHHHHHHHHHHTT---SEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccchhhhccccccccHHHHHHHHHHHHHHHHhcC--CCEEEEecCc
Confidence 46778888888876444 1 2333322211 1111 11122355667788888887 7999887654
Q ss_pred CCCCHHHHHHHHHHHHh-CCCcEEEe-----eeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEE
Q 036715 218 TVPNLPLMRAIIDKMTT-LKLPIWLT-----EVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIML 277 (362)
Q Consensus 218 ~~p~~~~~~~~L~~~a~-~glpI~iT-----E~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~ 277 (362)
+..+++.+++...+ .++|+||+ ........+...-...+...+..+ .+.+.+|-+
T Consensus 159 ---~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~--~~~~~~iGv 219 (305)
T PF02574_consen 159 ---SLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRAL--PPGPDAIGV 219 (305)
T ss_dssp ----CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHH--CTT-SEEEE
T ss_pred ---HHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCHHHHHHHHHHHHHHh--hhhhheEEc
Confidence 33445555555555 67888865 111212222333355555555555 344544433
No 66
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=63.07 E-value=4.3 Score=32.01 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=11.7
Q ss_pred EEecCCCCcCCCCeEEE
Q 036715 2 HVTNGHGDILQGAVIKI 18 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v 18 (362)
+|+|++|+||+|..|..
T Consensus 30 tV~D~~gnpv~g~~V~f 46 (100)
T PF02369_consen 30 TVTDANGNPVPGQPVTF 46 (100)
T ss_dssp EEEETTSEB-TS-EEEE
T ss_pred EEEcCCCCCCCCCEEEE
Confidence 57788888888888777
No 67
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=63.04 E-value=16 Score=26.41 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=23.4
Q ss_pred eeEE-EEEEeCC-eeeEEEEEEecCCCeeEEEEeC
Q 036715 330 YGFL-VSVKYGN-RTANSTFSLCRGDETRHVTIRL 362 (362)
Q Consensus 330 ~gf~-v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 362 (362)
.|.| |+|+.+| ...++++.+.++... .++++|
T Consensus 34 ~G~~~v~v~~~Gy~~~~~~v~v~~~~~~-~v~~~L 67 (71)
T PF08308_consen 34 PGEHTVTVEKPGYEPYTKTVTVKPGETT-TVNVTL 67 (71)
T ss_pred CccEEEEEEECCCeeEEEEEEECCCCEE-EEEEEE
Confidence 4566 8998888 677888999877654 666654
No 68
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=62.02 E-value=6.8 Score=34.66 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=17.9
Q ss_pred CEEecCCCCcCCCCeEEEEeccC
Q 036715 1 MHVTNGHGDILQGAVIKIKQVSK 23 (362)
Q Consensus 1 i~v~d~~g~p~~~a~v~v~~~~~ 23 (362)
.+|+|.+|+||+||.|+|=|...
T Consensus 34 G~V~D~~g~Pv~~A~veiWqada 56 (183)
T PF00775_consen 34 GRVIDTDGKPVPGALVEIWQADA 56 (183)
T ss_dssp EEEEETTSSB-TTEEEEEEE--T
T ss_pred EEEECCCCCCCCCcEEEEEecCC
Confidence 37999999999999999977754
No 69
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=61.72 E-value=6.7 Score=29.59 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.6
Q ss_pred EEecCC-CCcCCCCeEEEEecc
Q 036715 2 HVTNGH-GDILQGAVIKIKQVS 22 (362)
Q Consensus 2 ~v~d~~-g~p~~~a~v~v~~~~ 22 (362)
+|+|++ |+||++|.|.+....
T Consensus 5 ~V~d~~t~~pl~~a~V~~~~~~ 26 (88)
T PF13715_consen 5 KVVDSDTGEPLPGATVYLKNTK 26 (88)
T ss_pred EEEECCCCCCccCeEEEEeCCc
Confidence 588998 999999999998775
No 70
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=61.50 E-value=1.2e+02 Score=28.38 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCcccEEEee-ccCCCCCHHHHHHHHHHHH-hCCCcEEE
Q 036715 193 SYISRLRELRRSGVSTDGIGLQ-GHFTVPNLPLMRAIIDKMT-TLKLPIWL 241 (362)
Q Consensus 193 ~y~~~i~~l~~~G~~iDgIG~q-~H~~~p~~~~~~~~L~~~a-~~glpI~i 241 (362)
.-+++++...+.| +|++=+. +|+..++..++.+-...++ ..++||.|
T Consensus 84 ~~i~~a~~a~~~G--ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~i 132 (289)
T PF00701_consen 84 EAIELARHAQDAG--ADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIII 132 (289)
T ss_dssp HHHHHHHHHHHTT---SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHHHHHhhcC--ceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEE
Confidence 3444555555554 3555433 3333344444444444443 34566665
No 71
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=60.65 E-value=88 Score=34.26 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=64.3
Q ss_pred hcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEee-cCCCCCCCccccCCChHHHHHHHHHHHHHH
Q 036715 47 KRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIF-WENPKYNPTWVRNLTGFQLQSAVNSRIQSL 125 (362)
Q Consensus 47 ~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~-W~~~~~~P~W~~~~~~~~~~~~~~~~i~~v 125 (362)
.++|+++.- .+. ..+..+++|.+.||-|.=-..+ |+. .| ..++.++.+...|+++
T Consensus 333 ~n~N~vRts--HyP-------------~~~~~ydLcDelGllV~~Ea~~~~~~---~~------~~~~~~k~~~~~i~~m 388 (808)
T COG3250 333 ANMNSVRTS--HYP-------------NSEEFYDLCDELGLLVIDEAMIETHG---MP------DDPEWRKEVSEEVRRM 388 (808)
T ss_pred cCCCEEEec--CCC-------------CCHHHHHHHHHhCcEEEEecchhhcC---CC------CCcchhHHHHHHHHHH
Confidence 589999874 222 2367899999999988643333 222 22 3344567788899999
Q ss_pred HHHccC--ceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeec
Q 036715 126 MNKYKE--EFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNE 177 (362)
Q Consensus 126 v~ry~g--~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Nd 177 (362)
+.|=|. .|..|=+-||..+++. ...+.++.++.+|+-.+.+.+
T Consensus 389 ver~knHPSIiiWs~gNE~~~g~~---------~~~~~~~~k~~d~~r~~~~~~ 433 (808)
T COG3250 389 VERDRNHPSIIIWSLGNESGHGSN---------HWALYRWFKASDPTRPVQYEG 433 (808)
T ss_pred HHhccCCCcEEEEeccccccCccc---------cHHHHHHHhhcCCccceeccC
Confidence 998774 7999999999865321 134455556666665444443
No 72
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=60.56 E-value=9.6 Score=32.29 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||++|.|.|-|....
T Consensus 17 ~V~D~~g~pv~~A~VeiW~~d~~ 39 (146)
T cd00421 17 TVLDGDGCPVPDALVEIWQADAD 39 (146)
T ss_pred EEECCCCCCCCCcEEEEEecCCC
Confidence 79999999999999999888663
No 73
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=60.48 E-value=68 Score=30.61 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHHhC--CCcEEEe
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTTL--KLPIWLT 242 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~~--glpI~iT 242 (362)
...|.++++.|.+.| +|.|-+..- |++.+++.+++..... ++|+|+|
T Consensus 139 ~~~~~~q~~~l~~~g--vD~i~~ET~---~~~~E~~~~~~~~~~~~~~~pv~is 187 (304)
T PRK09485 139 QDFHRPRIEALAEAG--ADLLACETI---PNLDEAEALVELLKEEFPGVPAWLS 187 (304)
T ss_pred HHHHHHHHHHHhhCC--CCEEEEecc---CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 344666777777776 788877543 4667777777777644 8999997
No 74
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=60.15 E-value=9.4 Score=34.09 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|+|=|....
T Consensus 45 ~V~D~~g~Pv~~A~VeiWqad~~ 67 (193)
T TIGR02423 45 RVLDGDGHPVPDALIEIWQADAA 67 (193)
T ss_pred EEECCCCCCCCCCEEEEEccCCC
Confidence 68999999999999999887654
No 75
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=59.86 E-value=9.8 Score=32.82 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|+|=|....
T Consensus 21 ~V~D~~g~Pv~~A~veiWqad~~ 43 (158)
T cd03459 21 RVLDGDGRPVPDALVEIWQADAA 43 (158)
T ss_pred EEECCCCCCCCCCEEEEEccCCC
Confidence 79999999999999999887654
No 76
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=59.67 E-value=9.8 Score=34.69 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|+|=|....
T Consensus 71 ~V~D~~G~PV~~A~VEIWQad~~ 93 (220)
T cd03464 71 RVLDEDGRPVPNTLVEIWQANAA 93 (220)
T ss_pred EEECCCCCCCCCCEEEEEecCCC
Confidence 68999999999999999988655
No 77
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.55 E-value=10 Score=34.76 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|+|=|...+
T Consensus 78 ~VlD~~G~Pv~~A~VEiWQAda~ 100 (226)
T COG3485 78 RVLDGNGRPVPDALVEIWQADAD 100 (226)
T ss_pred EEECCCCCCCCCCEEEEEEcCCC
Confidence 79999999999999999887543
No 78
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=58.91 E-value=30 Score=34.83 Aligned_cols=80 Identities=13% Similarity=-0.063 Sum_probs=51.6
Q ss_pred ceeEEEEecccccccccccccChHHHHHHHHHHH---hhCCCceEEeecCCCccCCCccchhHHHHHHHHHH-HHHcCCc
Q 036715 132 EFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAH---QSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRE-LRRSGVS 207 (362)
Q Consensus 132 ~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar---~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~-l~~~G~~ 207 (362)
.|+.|=+-||+...--+.....++|...|-+.+| =.||..++++.+++.-..+ .+.++-.. |.+..-.
T Consensus 164 nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~~n~--------~~~~W~~~vl~~~~e~ 235 (501)
T COG3534 164 NVKYWGLGNEMDGPWQCGHKTAPEYGRLANEYRKYMKYFDPTIENVVCGSANGANP--------TDPNWEAVVLEEAYER 235 (501)
T ss_pred ccceEEeccccCCCcccccccCHHHHHHHHHHHHHHhhcCccccceEEeecCCCCC--------CchHHHHHHHHHHhhh
Confidence 5999999999854323345566888665554444 3699999999887642111 12222233 3333446
Q ss_pred ccEEEeeccCCC
Q 036715 208 TDGIGLQGHFTV 219 (362)
Q Consensus 208 iDgIG~q~H~~~ 219 (362)
+|+|.+|.++++
T Consensus 236 vD~ISlH~Y~Gn 247 (501)
T COG3534 236 VDYISLHYYKGN 247 (501)
T ss_pred cCeEEEEEecCc
Confidence 999999999875
No 79
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=58.90 E-value=1.5e+02 Score=28.47 Aligned_cols=225 Identities=9% Similarity=0.117 Sum_probs=98.2
Q ss_pred cCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCc-cccCCCh-HHHHHHHHHHHHHH
Q 036715 48 RFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPT-WVRNLTG-FQLQSAVNSRIQSL 125 (362)
Q Consensus 48 ~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~-W~~~~~~-~~~~~~~~~~i~~v 125 (362)
+.|.+++ +.+.|+.. -|+.++.+.+.||-|.--. ..|. -+.+.+| +.--..+.++...+
T Consensus 66 giNtIRV------Y~vdp~~n------Hd~CM~~~~~aGIYvi~Dl-------~~p~~sI~r~~P~~sw~~~l~~~~~~v 126 (314)
T PF03198_consen 66 GINTIRV------YSVDPSKN------HDECMSAFADAGIYVILDL-------NTPNGSINRSDPAPSWNTDLLDRYFAV 126 (314)
T ss_dssp T-SEEEE------S---TTS--------HHHHHHHHHTT-EEEEES--------BTTBS--TTS------HHHHHHHHHH
T ss_pred CCCEEEE------EEeCCCCC------HHHHHHHHHhCCCEEEEec-------CCCCccccCCCCcCCCCHHHHHHHHHH
Confidence 5777776 47777764 4999999999999886421 1331 1222222 12333455666677
Q ss_pred HHHccC--ceeEEEEecccccccccccccChHHHHHHHHHHHh----hCCCceEEeecCCCccCCCccchhHHHHHHHHH
Q 036715 126 MNKYKE--EFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQ----SDPLATLFMNEYNVVETCSDVNSMVDSYISRLR 199 (362)
Q Consensus 126 v~ry~g--~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~----adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~ 199 (362)
+..+++ .+-..=+-||.++...= ....-|++.+.+-.|+ ... -++-++ |+..+.. +. + ..+.+
T Consensus 127 id~fa~Y~N~LgFf~GNEVin~~~~--t~aap~vKAavRD~K~Yi~~~~~-R~IPVG-YsaaD~~-~~---r---~~~a~ 195 (314)
T PF03198_consen 127 IDAFAKYDNTLGFFAGNEVINDASN--TNAAPYVKAAVRDMKAYIKSKGY-RSIPVG-YSAADDA-EI---R---QDLAN 195 (314)
T ss_dssp HHHHTT-TTEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSSS-----EE-EEE---T-TT---H---HHHHH
T ss_pred HHHhccCCceEEEEecceeecCCCC--cccHHHHHHHHHHHHHHHHhcCC-CCCcee-EEccCCh-hH---H---HHHHH
Confidence 766663 58889999998764311 1134566666554443 222 122222 4432211 00 1 12222
Q ss_pred HHH--HcCCcccEEEeeccCC--CCCH--HHHHHHHHHHHhCCCcEEEeeeecCCCC--ChHHHHHHHHHHHHHHhcCCC
Q 036715 200 ELR--RSGVSTDGIGLQGHFT--VPNL--PLMRAIIDKMTTLKLPIWLTEVDISSKL--SKEKQAVYLEQVLREGFSHPS 271 (362)
Q Consensus 200 ~l~--~~G~~iDgIG~q~H~~--~p~~--~~~~~~L~~~a~~glpI~iTE~dv~~~~--~~~~QA~~~~~~~~~~~s~p~ 271 (362)
.|. .....+|-.|+..+-- ..+. ......++.|+.+.+||.++|++-.... .-.++...+..-|+..||
T Consensus 196 Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~~SGy~~l~~~f~~y~vPvffSEyGCn~~~pR~f~ev~aly~~~Mt~v~S--- 272 (314)
T PF03198_consen 196 YLNCGDDDERIDFFGLNSYEWCGDSTFETSGYDRLTKEFSNYSVPVFFSEYGCNTVTPRTFTEVPALYSPEMTDVWS--- 272 (314)
T ss_dssp HTTBTT-----S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEE---
T ss_pred HhcCCCcccccceeeeccceecCCCccccccHHHHHHHhhCCCCCeEEcccCCCCCCCccchHhHHhhCccchhhee---
Confidence 221 1224788888887752 2222 2467778888999999999999997631 112233344444443333
Q ss_pred eeEEEEEeeecCCCCCcccccCCCC--C--cchHHHHHHHHH
Q 036715 272 VSGIMLWAALHPNGCYQMCLTDNNL--Q--NLPAGDVVDKLL 309 (362)
Q Consensus 272 v~gi~~Wg~~d~~g~~~~gL~d~d~--~--~KPa~~~~~~li 309 (362)
|=+.+.+.... .+.||+.-+. . +.+-|..|++-+
T Consensus 273 --GGivYEy~~e~--n~yGlV~~~~~~~~~~~~Df~~L~~~~ 310 (314)
T PF03198_consen 273 --GGIVYEYFQEA--NNYGLVEISGDGSVTTLDDFDNLKSQY 310 (314)
T ss_dssp --EEEES-SB--S--SS--SEEE-TTS-EEE-THHHHHHHHH
T ss_pred --ceEEEEEeccC--CceEEEEEcCCCCeeecHhHHHHHHHH
Confidence 44445443221 2456653332 2 445666665443
No 80
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=58.16 E-value=1.7e+02 Score=29.64 Aligned_cols=105 Identities=12% Similarity=0.231 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHccCceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHH
Q 036715 117 AVNSRIQSLMNKYKEEFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYIS 196 (362)
Q Consensus 117 ~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~ 196 (362)
.+..+|+..+..--+.|...+-.|+.. -+..+.+.||+..-.+.+.+. |.. .+ ....+.|++
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~------------n~~~~v~~ak~~G~~v~~~i~-~t~--~p---~~~~~~~~~ 158 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR------------NLETAVKATKKAGGHAQVAIS-YTT--SP---VHTIDYFVK 158 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH------------HHHHHHHHHHHcCCeEEEEEE-eec--CC---CCCHHHHHH
Confidence 345566666666556677788888762 145567778877655444442 211 11 123566777
Q ss_pred HHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHH-hCCCcEEE
Q 036715 197 RLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMT-TLKLPIWL 241 (362)
Q Consensus 197 ~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a-~~glpI~i 241 (362)
+++.+.+.|+ |.|.+-=-.+.-.+..+.+.+..+. .+++||.+
T Consensus 159 ~a~~l~~~Ga--d~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 159 LAKEMQEMGA--DSICIKDMAGILTPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred HHHHHHHcCC--CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 7778877773 6666654445445666666666653 34666654
No 81
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=58.09 E-value=11 Score=33.51 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|.|=|....
T Consensus 42 ~V~D~~g~Pi~gA~VeiWqad~~ 64 (185)
T cd03463 42 RVYDGDGAPVPDAMLEIWQADAA 64 (185)
T ss_pred EEECCCCCCCCCCEEEEEcCCCC
Confidence 78999999999999999887654
No 82
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=58.04 E-value=11 Score=34.38 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=20.6
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|+|=|....
T Consensus 66 ~V~D~~g~PV~~A~VEIWQada~ 88 (220)
T TIGR02422 66 RVLDEDGRPVPNTLVEVWQANAA 88 (220)
T ss_pred EEECCCCCCCCCCEEEEEecCCC
Confidence 68999999999999999888654
No 83
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=58.00 E-value=2.2e+02 Score=29.06 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHccCceeEEEEeccc
Q 036715 117 AVNSRIQSLMNKYKEEFIHWDVSNEI 142 (362)
Q Consensus 117 ~~~~~i~~vv~ry~g~v~~WDV~NE~ 142 (362)
.++.+|+..+..--+.|...+-+|+.
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~ 121 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDI 121 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHH
Confidence 34556666666655667777777773
No 84
>PF13115 YtkA: YtkA-like
Probab=57.92 E-value=8.6 Score=29.00 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.8
Q ss_pred ecCCCCcCCCCeEEEEeccCC
Q 036715 4 TNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 4 ~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|.+|+||++|.|+++-....
T Consensus 28 ~~~~g~pv~~a~V~~~~~m~~ 48 (86)
T PF13115_consen 28 VDQGGKPVTDADVQFEIWMPD 48 (86)
T ss_pred ECCCCCCCCCCEEEEEEEeCC
Confidence 789999999999988776654
No 85
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=57.82 E-value=1.7e+02 Score=27.70 Aligned_cols=209 Identities=13% Similarity=0.233 Sum_probs=108.5
Q ss_pred CCChhHHHHHHhcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCcEEEEEE---------eecCCC--CCCCc
Q 036715 36 LGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHN---------IFWENP--KYNPT 104 (362)
Q Consensus 36 ~~~~~y~~~~~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~v~GH~---------L~W~~~--~~~P~ 104 (362)
+.|..+.++..+.|..++++ ..+ +.|.-+.+ .-.=+.-.+++|..+.... -.|... ...|+
T Consensus 31 l~d~~~~~i~~~~f~llVVD--ps~--~g~~~~~~----~~eelr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w~~~~p~ 102 (300)
T COG2342 31 LQDAYINEILNSPFDLLVVD--PSY--CGPFNTPW----TIEELRTKADGGVKPIAYLSIGEAESYRFYWDKYWLTGRPD 102 (300)
T ss_pred cccchHHHHhcCCCcEEEEe--ccc--cCCCCCcC----cHHHHHHHhcCCeeEEEEEechhhhhhhhHhhhhhhcCCcc
Confidence 34777888888999999998 333 22222222 2334677788884443221 112211 13688
Q ss_pred cccCCCh------------HHHHHHHHHHHHHHHH-HccCceeEEEEecccccccccc--c-ccCh-------HHHHHHH
Q 036715 105 WVRNLTG------------FQLQSAVNSRIQSLMN-KYKEEFIHWDVSNEILHFDFYE--Q-RLGP-------KAALHFF 161 (362)
Q Consensus 105 W~~~~~~------------~~~~~~~~~~i~~vv~-ry~g~v~~WDV~NE~~~~~~~~--~-~lG~-------~~~~~af 161 (362)
|+-.-+| ++-++.+..+.+++.. -|.|- .-|+|-.- -+|. + ..|. .++.+.-
T Consensus 103 wLg~edP~W~Gny~VkYW~~eWkdii~~~l~rL~d~GfdGv--yLD~VD~y---~Y~~~~~~~~~~~~~k~m~~~i~~i~ 177 (300)
T COG2342 103 WLGEEDPEWPGNYAVKYWEPEWKDIIRSYLDRLIDQGFDGV--YLDVVDAY---WYVEWNDRETGVNAAKKMVKFIAAIA 177 (300)
T ss_pred cccCCCCCCCCCceeeccCHHHHHHHHHHHHHHHHccCceE--EEeeechH---HHHHHhcccccccHHHHHHHHHHHHH
Confidence 8754322 3456666677766654 35552 22443221 1111 1 1221 3455566
Q ss_pred HHHHhhCCCceEEeec-CCCccCCCccchhHHHHHHHHHHHHHcCCccc-EEEeeccCCC---C--CHHHHHHHHHHHHh
Q 036715 162 QTAHQSDPLATLFMNE-YNVVETCSDVNSMVDSYISRLRELRRSGVSTD-GIGLQGHFTV---P--NLPLMRAIIDKMTT 234 (362)
Q Consensus 162 ~~Ar~adP~a~L~~Nd-y~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iD-gIG~q~H~~~---p--~~~~~~~~L~~~a~ 234 (362)
..+|++.|.-.++.|- =.+++..+ ..++.+ .+ |.....-|.. + .....++.|+++.+
T Consensus 178 ~~~ra~~~~~~Vi~qng~~l~d~~~-------------a~l~~~---~~~~~~vE~~~~d~~~~~~~~~~~e~~Lr~l~~ 241 (300)
T COG2342 178 EYARAANPLFRVIPQNGAELFDADG-------------AGLLPR---LGFGVAVETVFYDDERPLESADTFEEYLRKLCR 241 (300)
T ss_pred HHHHhcCCcEEEEecccHhhcCccc-------------cchhhc---cccceEEEEEEecCccCCCchhhHHHHHHHHHh
Confidence 7889999996666652 11222110 011111 11 1112222321 1 23456689999999
Q ss_pred CCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEee
Q 036715 235 LKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAA 280 (362)
Q Consensus 235 ~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~ 280 (362)
+|+||..-|++...+ ++.. .-+++++. ...+.|+.-...
T Consensus 242 ~G~~V~vieY~~d~~-~~~~--~r~~~~~~----ktr~~g~~p~~~ 280 (300)
T COG2342 242 LGKPVYVIEYALDPT-DPRE--SRLEDLFE----KTRAEGVYPYVA 280 (300)
T ss_pred cCCcEEEEEecCCCC-chhh--HHHHHHHH----HhhccceEEeee
Confidence 999999999999874 2222 33444443 334556655544
No 86
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=57.38 E-value=1.6e+02 Score=31.07 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHccCceeEEEEeccccccc---------------c--c--ccccChHHHHHHHHHHHhhCCCceEEeec
Q 036715 117 AVNSRIQSLMNKYKEEFIHWDVSNEILHFD---------------F--Y--EQRLGPKAALHFFQTAHQSDPLATLFMNE 177 (362)
Q Consensus 117 ~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~---------------~--~--~~~lG~~~~~~af~~Ar~adP~a~L~~Nd 177 (362)
.++.|++..+..--+.++..|-+|+..+-- . + ......+|+....+.+.++..+ .|.+-|
T Consensus 97 vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad-~I~IkD 175 (596)
T PRK14042 97 VVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCD-SIAIKD 175 (596)
T ss_pred HHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC-EEEeCC
Confidence 456677777777677888899999975310 0 1 1122347777777777766554 566666
Q ss_pred CCCccCCCccchhHHHHHHHHHHHHHc-CCcccEEEeeccCCC
Q 036715 178 YNVVETCSDVNSMVDSYISRLRELRRS-GVSTDGIGLQGHFTV 219 (362)
Q Consensus 178 y~~~~~~~~~~~~~~~y~~~i~~l~~~-G~~iDgIG~q~H~~~ 219 (362)
-.-+- ++....++++.|++. ++| |++|+|-..
T Consensus 176 taG~l-------~P~~v~~lv~alk~~~~ip---i~~H~Hnt~ 208 (596)
T PRK14042 176 MAGLL-------TPTVTVELYAGLKQATGLP---VHLHSHSTS 208 (596)
T ss_pred cccCC-------CHHHHHHHHHHHHhhcCCE---EEEEeCCCC
Confidence 43321 345666777777664 333 677888644
No 87
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=56.94 E-value=75 Score=29.43 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccc------cCCChHHHHHHHHHHHH---HHHHHccCceeEEEEeccc
Q 036715 72 YTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWV------RNLTGFQLQSAVNSRIQ---SLMNKYKEEFIHWDVSNEI 142 (362)
Q Consensus 72 ~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~------~~~~~~~~~~~~~~~i~---~vv~ry~g~v~~WDV~NE~ 142 (362)
.....+.|++|+++|+.+=.|+= .|+-. -.++++++++.+..-|. .++...+.++.+-- |
T Consensus 41 p~~M~~tv~lA~~~gV~iGAHPs-------yPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~a~~~g~~l~hVK----P 109 (242)
T PF03746_consen 41 PETMRRTVRLAKEHGVAIGAHPS-------YPDREGFGRRSMDISPEELRDSVLYQIGALQAIAAAEGVPLHHVK----P 109 (242)
T ss_dssp HHHHHHHHHHHHHTT-EEEEE----------S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHTT--EEEE------
T ss_pred HHHHHHHHHHHHHcCCEeccCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEec----c
Confidence 35567889999999999999972 45432 13677887776665544 56777877776543 2
Q ss_pred cccccccccc-ChHHHHHHHHHHHhhCCCceEEee
Q 036715 143 LHFDFYEQRL-GPKAALHFFQTAHQSDPLATLFMN 176 (362)
Q Consensus 143 ~~~~~~~~~l-G~~~~~~af~~Ar~adP~a~L~~N 176 (362)
|+-.+-... -+++.....+++++.+|+..|+.-
T Consensus 110 -HGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ 143 (242)
T PF03746_consen 110 -HGALYNMAAKDEELARAIAEAIKAFDPDLPLYGL 143 (242)
T ss_dssp --HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEE
T ss_pred -cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEc
Confidence 332221111 235667778999999999888764
No 88
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=56.76 E-value=9.4 Score=38.10 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.2
Q ss_pred EEecCCCCcCCCCeEEEEeccCCCc
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKDFP 26 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~f~ 26 (362)
.|+|++|+|+++|.|+|+...|.+.
T Consensus 334 ~V~d~~g~~i~~a~i~v~g~~~~v~ 358 (405)
T cd03869 334 VVRDKTGKGIPNAIISVEGINHDIR 358 (405)
T ss_pred EEECCCCCcCCCcEEEEecCcccee
Confidence 4899999999999999999888654
No 89
>PRK09936 hypothetical protein; Provisional
Probab=56.26 E-value=1.9e+02 Score=27.62 Aligned_cols=157 Identities=15% Similarity=0.297 Sum_probs=84.0
Q ss_pred CChhHHHHH----HhcCCeeeeCCCccccccccCCCcccchhHH----HHHHHHHhcCcEEEEEEeecCCCCCCCccccC
Q 036715 37 GNLPYQKWF----VKRFNAAVFENELKWYATEAEQGKVNYTVAD----QMMEFVRANKLIVRGHNIFWENPKYNPTWVRN 108 (362)
Q Consensus 37 ~~~~y~~~~----~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D----~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~ 108 (362)
....+++++ .-.|+.+.+ -|..+ |.-+|...| +.++.|.+.||+|+-.. ..-|+|...
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLiv----QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL------~~Dp~y~q~ 101 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVV----QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVGL------YADPEFFMH 101 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEE----Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEcc------cCChHHHHH
Confidence 344555544 457998885 48666 222666544 67899999999997432 136777765
Q ss_pred C--ChHHHHHHHHHHHHHHH-------HHccCceeEEEEecccccccccccccChHHHHHHHHHHHhhCC--CceEEeec
Q 036715 109 L--TGFQLQSAVNSRIQSLM-------NKYKEEFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDP--LATLFMNE 177 (362)
Q Consensus 109 ~--~~~~~~~~~~~~i~~vv-------~ry~g~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP--~a~L~~Nd 177 (362)
+ +++++.+.+..+..+-. ++..=.+..|=+==|.... -|.+.--.+.+....+.+.+.-| +-.|.|.-
T Consensus 102 ~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~-~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISa 180 (296)
T PRK09936 102 QKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDL-NWRDEARRQPLLTWLNAAQRLIDVSAKPVHISA 180 (296)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchh-cccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEe
Confidence 4 33344444443333322 3333345667766665421 23332112334444444444433 45667776
Q ss_pred CCCccCCCccchhHHHHHHHHHHHHHcCCc---ccEEEee
Q 036715 178 YNVVETCSDVNSMVDSYISRLRELRRSGVS---TDGIGLQ 214 (362)
Q Consensus 178 y~~~~~~~~~~~~~~~y~~~i~~l~~~G~~---iDgIG~q 214 (362)
|..-.. ++..+-..++.|...|+. =||+|+.
T Consensus 181 y~~g~~------sP~~l~~Wl~~l~~~~l~V~~QDGvGv~ 214 (296)
T PRK09936 181 FFAGNM------SPDGYRQWLEQLKATGVNVWVQDGSGVD 214 (296)
T ss_pred ecccCC------ChHHHHHHHHHHhhcCCeEEEEcCCCcc
Confidence 653111 245556666677766653 2555553
No 90
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=56.15 E-value=32 Score=34.04 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=33.7
Q ss_pred ceeeeCCCcEEEEe---eEE-EEEEeCC-eeeEEEEEEecCCCeeEEEEeC
Q 036715 317 VTGHTDAHGSYSFY---GFL-VSVKYGN-RTANSTFSLCRGDETRHVTIRL 362 (362)
Q Consensus 317 ~~~~td~~G~~~~~---gf~-v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 362 (362)
...+||.+|.|... |.+ |+|+..| .+.++++.|..+..+ ++.|.|
T Consensus 324 ~~~~Td~~G~f~~~l~pG~ytl~vs~~GY~~~~~~v~V~~~~~~-~~~~~L 373 (375)
T cd03863 324 HPVTTYKDGDYWRLLVPGTYKVTASARGYDPVTKTVEVDSKGAV-QVNFTL 373 (375)
T ss_pred CceEECCCccEEEccCCeeEEEEEEEcCcccEEEEEEEcCCCcE-EEEEEe
Confidence 45789999999973 556 9999988 566777888877654 666654
No 91
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=55.59 E-value=1.6e+02 Score=33.77 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHccCceeEEEEecccc
Q 036715 116 SAVNSRIQSLMNKYKEEFIHWDVSNEIL 143 (362)
Q Consensus 116 ~~~~~~i~~vv~ry~g~v~~WDV~NE~~ 143 (362)
..++.|++..+.+--+.++..|-+|..-
T Consensus 625 ~vv~~f~~~~~~~GidifrifD~lN~~~ 652 (1143)
T TIGR01235 625 NVVKYFVKQAAQGGIDIFRVFDSLNWVE 652 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcCHH
Confidence 4566677777777777788888888764
No 92
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=55.47 E-value=1.9e+02 Score=27.38 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=64.3
Q ss_pred ceeEEEEecccccccccc-cccChHHHHHHHHHHHhhCCCceEEeec-CCCccCCCccchhHHHHHHHHHHHHHcCCccc
Q 036715 132 EFIHWDVSNEILHFDFYE-QRLGPKAALHFFQTAHQSDPLATLFMNE-YNVVETCSDVNSMVDSYISRLRELRRSGVSTD 209 (362)
Q Consensus 132 ~v~~WDV~NE~~~~~~~~-~~lG~~~~~~af~~Ar~adP~a~L~~Nd-y~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iD 209 (362)
.|..--|-||.+..+.-. ..|+ +|+...=-+.+++.=+.++..-| ++.+... + . |.+ ..|
T Consensus 133 ~v~~v~VGnEal~r~~~tasql~-~~I~~vrsav~~agy~gpV~T~dsw~~~~~n------p-~-------l~~---~SD 194 (305)
T COG5309 133 DVTTVTVGNEALNRNDLTASQLI-EYIDDVRSAVKEAGYDGPVTTVDSWNVVINN------P-E-------LCQ---ASD 194 (305)
T ss_pred ceEEEEechhhhhcCCCCHHHHH-HHHHHHHHHHHhcCCCCceeecccceeeeCC------h-H-------Hhh---hhh
Confidence 688888999998654321 1121 45555544555665555543332 2222110 1 1 111 125
Q ss_pred EEEeecc--CCC-C--CH--HHHHHHHHHHH-h--CCCcEEEeeeecCCC--------CChHHHHHHHHHHHHHHhc
Q 036715 210 GIGLQGH--FTV-P--NL--PLMRAIIDKMT-T--LKLPIWLTEVDISSK--------LSKEKQAVYLEQVLREGFS 268 (362)
Q Consensus 210 gIG~q~H--~~~-p--~~--~~~~~~L~~~a-~--~glpI~iTE~dv~~~--------~~~~~QA~~~~~~~~~~~s 268 (362)
-|+.+.| +.. + +. .-+.+.|+++. . ..+++||||.++++. .+.+.|++++++++-...+
T Consensus 195 fia~N~~aYwd~~~~a~~~~~f~~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~ 271 (305)
T COG5309 195 FIAANAHAYWDGQTVANAAGTFLLEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS 271 (305)
T ss_pred hhhcccchhccccchhhhhhHHHHHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc
Confidence 4555555 332 2 11 11334466653 2 238999999999984 2457899999988765544
No 93
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=55.29 E-value=11 Score=34.86 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|+|=|....
T Consensus 104 ~V~D~~G~Pv~~A~VeiWqad~~ 126 (246)
T TIGR02465 104 TVRDLSGTPVAGAVIDVWHSTPD 126 (246)
T ss_pred EEEcCCCCCcCCcEEEEECCCCC
Confidence 68999999999999999887664
No 94
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=55.17 E-value=12 Score=34.80 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|+|=|....
T Consensus 105 ~V~D~~G~Pv~~A~VeiWqad~~ 127 (247)
T cd03462 105 TVKDLAGAPVAGAVIDVWHSTPD 127 (247)
T ss_pred EEEcCCCCCcCCcEEEEECCCCC
Confidence 78999999999999999887654
No 95
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=55.11 E-value=2.4e+02 Score=29.81 Aligned_cols=56 Identities=7% Similarity=0.034 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC
Q 036715 154 PKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV 219 (362)
Q Consensus 154 ~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~ 219 (362)
.+|+....+.+.++..+ .|.+-|-+-+- .+....++++.+++.- + --||+|+|-..
T Consensus 153 ~~~~~~~a~~l~~~Gad-~I~i~Dt~G~~-------~P~~~~~lv~~lk~~~-~-~pi~~H~Hnt~ 208 (592)
T PRK09282 153 IEKYVELAKELEEMGCD-SICIKDMAGLL-------TPYAAYELVKALKEEV-D-LPVQLHSHCTS 208 (592)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCcCCCc-------CHHHHHHHHHHHHHhC-C-CeEEEEEcCCC
Confidence 35555555555554332 45555543221 2445555666665531 1 12667777544
No 96
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=54.89 E-value=12 Score=34.94 Aligned_cols=23 Identities=30% Similarity=0.487 Sum_probs=20.5
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|.|=|....
T Consensus 110 ~V~D~~G~Pv~~A~VeiWqad~~ 132 (256)
T cd03458 110 TVTDTDGKPLAGATVDVWHADPD 132 (256)
T ss_pred EEEcCCCCCCCCcEEEEEccCCC
Confidence 79999999999999999887654
No 97
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=54.45 E-value=2.6e+02 Score=28.89 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHccCceeEEEEecccc
Q 036715 117 AVNSRIQSLMNKYKEEFIHWDVSNEIL 143 (362)
Q Consensus 117 ~~~~~i~~vv~ry~g~v~~WDV~NE~~ 143 (362)
.++.+|+..+..--+.|+..|-+|+..
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~lndv~ 124 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDALNDPR 124 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCChHH
Confidence 456677777777667788888888863
No 98
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=51.39 E-value=1.5e+02 Score=34.59 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=57.9
Q ss_pred HHHHHHHHHh-cCcEEEEEEeecCCCCCCC-cccc-CCChHHHHHHHHHHHHHHHHHccC-ceeEEEEeccccccccccc
Q 036715 75 ADQMMEFVRA-NKLIVRGHNIFWENPKYNP-TWVR-NLTGFQLQSAVNSRIQSLMNKYKE-EFIHWDVSNEILHFDFYEQ 150 (362)
Q Consensus 75 ~D~~v~~a~~-~gi~v~GH~L~W~~~~~~P-~W~~-~~~~~~~~~~~~~~i~~vv~ry~g-~v~~WDV~NE~~~~~~~~~ 150 (362)
+|.+.+||.. ...-+|=-.++|++- .- .+=. .-+.+.|.+.|.+|++.+++-|.| ||+ |- |..+
T Consensus 451 ~dpl~DfA~~~S~aYLRREvIvWGDc--VKLRYG~~peDsP~LW~~M~~Y~~~~AkiF~G~RiD-----NC--HSTP--- 518 (1464)
T TIGR01531 451 SDPLRDFASPGSRVYLRRELICWGDS--VKLRYGNKPEDSPYLWQHMKEYTEMTARIFDGVRID-----NC--HSTP--- 518 (1464)
T ss_pred CchhhhhcCCCCceeEEEEEeeccce--eeeccCCCCcCCHHHHHHHHHHHHHHHHhhcceeee-----cc--cCCc---
Confidence 6888898853 335567778889852 11 0000 012356899999999999999998 554 42 4222
Q ss_pred ccChHHHHHHHHHHHhhCCC----ceEEee
Q 036715 151 RLGPKAALHFFQTAHQSDPL----ATLFMN 176 (362)
Q Consensus 151 ~lG~~~~~~af~~Ar~adP~----a~L~~N 176 (362)
-...+...+.||++.|+ |.||.+
T Consensus 519 ---lhVaeylLd~AR~vnPnLyV~AELFTG 545 (1464)
T TIGR01531 519 ---IHVAEYLLDAARKYNPNLYVVAELFTG 545 (1464)
T ss_pred ---HHHHHHHHHHHhhcCCCeEEEeeecCC
Confidence 24556788999999999 555555
No 99
>PRK12999 pyruvate carboxylase; Reviewed
Probab=51.38 E-value=1.6e+02 Score=33.63 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHccCceeEEEEeccc
Q 036715 118 VNSRIQSLMNKYKEEFIHWDVSNEI 142 (362)
Q Consensus 118 ~~~~i~~vv~ry~g~v~~WDV~NE~ 142 (362)
+.+||+..+..--+.|+..|-.|+.
T Consensus 629 ~~~~i~~a~~~Gid~~rifd~lnd~ 653 (1146)
T PRK12999 629 VRAFVREAAAAGIDVFRIFDSLNWV 653 (1146)
T ss_pred HHHHHHHHHHcCCCEEEEeccCChH
Confidence 4456666666666667777777763
No 100
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=51.11 E-value=45 Score=32.79 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=32.1
Q ss_pred eeeeCCCcEEEEe---eEE-EEEEeCC-eeeEEEEEEecCCCeeEEEEeC
Q 036715 318 TGHTDAHGSYSFY---GFL-VSVKYGN-RTANSTFSLCRGDETRHVTIRL 362 (362)
Q Consensus 318 ~~~td~~G~~~~~---gf~-v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 362 (362)
..+||.+|.|.+. |-+ |+|+..| .+.++++.|..+..+ ++.+.|
T Consensus 313 ~~~T~~~G~y~~~L~pG~y~v~vs~~Gy~~~~~~V~v~~~~~~-~~~f~L 361 (363)
T cd06245 313 RVYTKEGGYFHVLLAPGQHNINVIAEGYQQEHLPVVVSHDEAS-SVKIVL 361 (363)
T ss_pred ceEeCCCcEEEEecCCceEEEEEEEeCceeEEEEEEEcCCCeE-EEEEEe
Confidence 4579999999985 434 8999888 567778888877654 555543
No 101
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=50.86 E-value=2.2e+02 Score=26.75 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=11.8
Q ss_pred CCcccchhHHHHHHHHHhcCc
Q 036715 67 QGKVNYTVADQMMEFVRANKL 87 (362)
Q Consensus 67 ~G~~~~~~~D~~v~~a~~~gi 87 (362)
.|..|++...++++++.+.|+
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv 36 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGT 36 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCC
Confidence 345555555555666555554
No 102
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=50.77 E-value=15 Score=34.82 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|+|=|....
T Consensus 134 ~V~D~~G~PI~gA~VeIWqad~~ 156 (285)
T TIGR02439 134 QVTDADGKPIAGAKVELWHANTK 156 (285)
T ss_pred EEECCCCCCcCCcEEEEEccCCC
Confidence 79999999999999999888665
No 103
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=50.21 E-value=13 Score=36.75 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=18.4
Q ss_pred EEecCCCCcCCCCeEEEEecc
Q 036715 2 HVTNGHGDILQGAVIKIKQVS 22 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~ 22 (362)
+|+|.+|+||+||.|+|....
T Consensus 300 ~V~D~~g~pi~~A~V~v~g~~ 320 (376)
T cd03866 300 QVFDSNGNPIPNAIVEVKGRK 320 (376)
T ss_pred EEECCCCCccCCeEEEEEcCC
Confidence 589999999999999998754
No 104
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=49.03 E-value=14 Score=36.77 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=17.9
Q ss_pred EEecCCCCcCCCCeEEEEeccC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSK 23 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~ 23 (362)
+|+|++|.||+||.|+|+...+
T Consensus 331 ~V~D~~g~pI~~AtV~V~g~~~ 352 (402)
T cd03865 331 FVKDLQGNPIANATISVEGIDH 352 (402)
T ss_pred EEECCCCCcCCCeEEEEEcCcc
Confidence 4888888999999999886654
No 105
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=49.02 E-value=18 Score=34.26 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|.|=|....
T Consensus 138 ~V~D~~G~Pv~gA~VdiWqada~ 160 (281)
T TIGR02438 138 QVTDLDGNGLAGAKVELWHADDD 160 (281)
T ss_pred EEEcCCCCCcCCCEEEEEecCCC
Confidence 68999999999999999777554
No 106
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=49.01 E-value=2.4e+02 Score=26.83 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=48.3
Q ss_pred CCcccchhHHHHHHHHHhcCcE---EEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEEEecccc
Q 036715 67 QGKVNYTVADQMMEFVRANKLI---VRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEIL 143 (362)
Q Consensus 67 ~G~~~~~~~D~~v~~a~~~gi~---v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~ 143 (362)
.|+.|++...++++++.++|+. +.|++ =... .+ -.+.-.+.++.++..-+||+. |+--..
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~Gst---------GE~~-~L----t~eEr~~v~~~~~~~~~grvp---vi~Gv~ 85 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTF---------GECA-TL----TWEEKQAFVATVVETVAGRVP---VFVGAT 85 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccc---------ccch-hC----CHHHHHHHHHHHHHHhCCCCC---EEEEec
Confidence 5788888888888888887753 23322 1111 11 145666777777777777653 211000
Q ss_pred cccccccccChHHHHHHHHHHHhhCCCceEEeecC
Q 036715 144 HFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEY 178 (362)
Q Consensus 144 ~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy 178 (362)
..+.+-....-+.|+++-.++.+++.=|
T Consensus 86 -------~~~t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 86 -------TLNTRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred -------cCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 1122333344455555666777766543
No 107
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=48.99 E-value=17 Score=34.51 Aligned_cols=23 Identities=22% Similarity=0.396 Sum_probs=20.6
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|.|=|....
T Consensus 130 ~V~D~~G~PI~~A~VeiWqad~~ 152 (282)
T cd03460 130 TVTDTDGKPVPGAKVEVWHANSK 152 (282)
T ss_pred EEECCCCCCcCCcEEEEECCCCC
Confidence 68999999999999999887654
No 108
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=48.92 E-value=2.3e+02 Score=26.55 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=13.0
Q ss_pred CCcccchhHHHHHHHHHhc-Cc
Q 036715 67 QGKVNYTVADQMMEFVRAN-KL 87 (362)
Q Consensus 67 ~G~~~~~~~D~~v~~a~~~-gi 87 (362)
.|+.|++...++++++.+. |+
T Consensus 15 dg~iD~~~~~~~i~~l~~~~Gv 36 (288)
T cd00954 15 NGEINEDVLRAIVDYLIEKQGV 36 (288)
T ss_pred CCCCCHHHHHHHHHHHHhcCCC
Confidence 3566666666666666665 54
No 109
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=48.72 E-value=49 Score=33.06 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=33.3
Q ss_pred eeeeCCCcEEEEe---eEE-EEEEeCC-eeeEEEEEEecCCCeeEEEEeC
Q 036715 318 TGHTDAHGSYSFY---GFL-VSVKYGN-RTANSTFSLCRGDETRHVTIRL 362 (362)
Q Consensus 318 ~~~td~~G~~~~~---gf~-v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 362 (362)
..+||.+|.|.+. |-+ |+|+..| .+.++++.|..+..+ .+.+.|
T Consensus 353 ~~~T~~~G~Y~~~L~pG~Ytv~vsa~Gy~~~~~~V~V~~~~~~-~vdf~L 401 (402)
T cd03865 353 DITSAKDGDYWRLLAPGNYKLTASAPGYLAVVKKVAVPYSPAV-RVDFEL 401 (402)
T ss_pred ccEECCCeeEEECCCCEEEEEEEEecCcccEEEEEEEcCCCcE-EEeEEe
Confidence 4578999999963 555 9999988 566788899888754 666654
No 110
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=48.26 E-value=44 Score=27.82 Aligned_cols=90 Identities=12% Similarity=0.309 Sum_probs=54.5
Q ss_pred hHHHHH-HhcCCeeeeC----CCccccccc--c-CCCcccchhHHHHHHHHHhcCcEEEEE-EeecCCC--CCCCccccC
Q 036715 40 PYQKWF-VKRFNAAVFE----NELKWYATE--A-EQGKVNYTVADQMMEFVRANKLIVRGH-NIFWENP--KYNPTWVRN 108 (362)
Q Consensus 40 ~y~~~~-~~~Fn~~t~e----n~~kW~~~E--p-~~G~~~~~~~D~~v~~a~~~gi~v~GH-~L~W~~~--~~~P~W~~~ 108 (362)
.+.+.+ ..+-|++++- +.+-|+-.+ + .|+- ..+.+-++++.|.++||+|-+. +..|+.. ..-|+|...
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 345555 3578888882 223333222 2 2222 3455678999999999999864 3445432 136888641
Q ss_pred ----C----------------ChHHHHHHHHHHHHHHHHHcc
Q 036715 109 ----L----------------TGFQLQSAVNSRIQSLMNKYK 130 (362)
Q Consensus 109 ----~----------------~~~~~~~~~~~~i~~vv~ry~ 130 (362)
- .....++.+...|+++++||.
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 83 DADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred CCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 0 012355788888999999994
No 111
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=48.04 E-value=49 Score=31.39 Aligned_cols=47 Identities=21% Similarity=0.522 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHHhCCCcEEEeeeecC
Q 036715 195 ISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTTLKLPIWLTEVDIS 247 (362)
Q Consensus 195 ~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~~glpI~iTE~dv~ 247 (362)
...|+.|.++| +|-+|+.. .|++.+.+..++...++++|.||+ +.+.
T Consensus 137 ~~rie~l~~ag--~Dlla~ET---ip~i~Ea~Aiv~l~~~~s~p~wIS-fT~~ 183 (300)
T COG2040 137 RPRIEALNEAG--ADLLACET---LPNITEAEAIVQLVQEFSKPAWIS-FTLN 183 (300)
T ss_pred HHHHHHHHhCC--CcEEeecc---cCChHHHHHHHHHHHHhCCceEEE-EEeC
Confidence 34677788888 78887743 467788888888888889999998 5554
No 112
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=47.79 E-value=15 Score=36.51 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.5
Q ss_pred EEecCCCCcCCCCeEEEEeccC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSK 23 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~ 23 (362)
+|+|.+|+||+||.|.|+...+
T Consensus 321 ~V~D~~g~pi~~A~V~v~g~~~ 342 (392)
T cd03864 321 MVTDENNNGIANAVISVSGISH 342 (392)
T ss_pred EEECCCCCccCCeEEEEECCcc
Confidence 4788888899999888876554
No 113
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=47.59 E-value=17 Score=34.27 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEecCCCCcCCCCeEEEEeccCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKD 24 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~ 24 (362)
+|+|.+|+||+||.|.|=|....
T Consensus 126 ~V~D~~G~Pv~gA~VeiWqad~~ 148 (277)
T cd03461 126 RVTDTDGKPLPGATVDVWQADPN 148 (277)
T ss_pred EEEcCCCCCcCCcEEEEECcCCC
Confidence 69999999999999999887655
No 114
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=47.57 E-value=14 Score=37.32 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.3
Q ss_pred EEecCCCCcCCCCeEEEEeccCCCc
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKDFP 26 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~f~ 26 (362)
.|+|.+|+|+++|.|+|+...|+..
T Consensus 383 ~V~D~~G~~I~NA~IsV~ginHdv~ 407 (500)
T KOG2649|consen 383 LVFDDTGNPIANATISVDGINHDVT 407 (500)
T ss_pred eEEcCCCCccCceEEEEecCcCcee
Confidence 4899999999999999999998743
No 115
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=47.05 E-value=3.7e+02 Score=28.35 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHccCceeEEEEeccc
Q 036715 118 VNSRIQSLMNKYKEEFIHWDVSNEI 142 (362)
Q Consensus 118 ~~~~i~~vv~ry~g~v~~WDV~NE~ 142 (362)
++.+++..+..--+.|...|-.|+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~ 117 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP 117 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH
Confidence 3445555444433456666666664
No 116
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=46.85 E-value=14 Score=34.28 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=17.3
Q ss_pred CEEecCCCCcCCCCeEEEEecc
Q 036715 1 MHVTNGHGDILQGAVIKIKQVS 22 (362)
Q Consensus 1 i~v~d~~g~p~~~a~v~v~~~~ 22 (362)
++|+|. |+||+||+|.++-..
T Consensus 176 ~~vl~~-GkPv~nA~V~v~~~n 196 (264)
T COG5266 176 GKVLDN-GKPVPNATVEVEFDN 196 (264)
T ss_pred EEEEEC-CccCCCcEEEEEEec
Confidence 367877 999999999998554
No 117
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=46.81 E-value=2.2e+02 Score=25.62 Aligned_cols=125 Identities=9% Similarity=0.070 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEEEeccccccccccccc
Q 036715 73 TVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFDFYEQRL 152 (362)
Q Consensus 73 ~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~~~~~~l 152 (362)
...+..++.+.+.|+.... .++--++ .........+.++..+.+.+.++...+ .+..+ . +|=+. . ...
T Consensus 67 ~~i~~~~~~~~~~g~~~i~-i~~~~s~-~~~~~~~~~~~~~~~~~~~~~v~~ak~-~g~~v---~-~~~~~-~----~~~ 134 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIR-IFISVSD-LHIRKNLNKSREEALERIEEAVKYAKE-LGYEV---A-FGCED-A----SRT 134 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEE-EEEETSH-HHHHHHTCSHHHHHHHHHHHHHHHHHH-TTSEE---E-EEETT-T----GGS
T ss_pred HHHHHHHHhhHhccCCEEE-ecCcccH-HHHHHhhcCCHHHHHHHHHHHHHHHHh-cCCce---E-eCccc-c----ccc
Confidence 4456667777778886642 2221110 001112234555666666666655543 33334 1 22111 1 133
Q ss_pred ChHHHHHHHHHHHhhCCCceEEeec-CCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC
Q 036715 153 GPKAALHFFQTAHQSDPLATLFMNE-YNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV 219 (362)
Q Consensus 153 G~~~~~~af~~Ar~adP~a~L~~Nd-y~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~ 219 (362)
.++++...++.+.++.++. +++.| ++.. .+..+.++++.++++--+ -.||+|+|-..
T Consensus 135 ~~~~~~~~~~~~~~~g~~~-i~l~Dt~G~~--------~P~~v~~lv~~~~~~~~~-~~l~~H~Hnd~ 192 (237)
T PF00682_consen 135 DPEELLELAEALAEAGADI-IYLADTVGIM--------TPEDVAELVRALREALPD-IPLGFHAHNDL 192 (237)
T ss_dssp SHHHHHHHHHHHHHHT-SE-EEEEETTS-S---------HHHHHHHHHHHHHHSTT-SEEEEEEBBTT
T ss_pred cHHHHHHHHHHHHHcCCeE-EEeeCccCCc--------CHHHHHHHHHHHHHhccC-CeEEEEecCCc
Confidence 4688889999999987766 45555 3332 356666777777775333 57899999654
No 118
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=46.66 E-value=23 Score=29.72 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.3
Q ss_pred EecCCCCcCCCCeEEEEeccC
Q 036715 3 VTNGHGDILQGAVIKIKQVSK 23 (362)
Q Consensus 3 v~d~~g~p~~~a~v~v~~~~~ 23 (362)
+.|+.|+||+|+.|.++..+.
T Consensus 9 L~dg~G~pv~g~~I~L~A~~t 29 (134)
T PF08400_consen 9 LKDGAGKPVPGCTITLKARRT 29 (134)
T ss_pred EeCCCCCcCCCCEEEEEEccC
Confidence 679999999999999987654
No 119
>PLN02489 homocysteine S-methyltransferase
Probab=46.11 E-value=2e+02 Score=27.86 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHHhC--CCcEEEee
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTTL--KLPIWLTE 243 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~~--glpI~iTE 243 (362)
...|..+++.|.+.| +|.|-+..- |++.+++.+++.+... ++|+|||=
T Consensus 166 ~~~~~~qi~~l~~~g--vD~i~~ET~---~~l~E~~a~~~~~~~~~~~~p~~iS~ 215 (335)
T PLN02489 166 KDFHRRRLQVLAEAG--PDLIAFETI---PNKLEAQAYVELLEEENIKIPAWISF 215 (335)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEecc---CChHHHHHHHHHHHHcCCCCeEEEEE
Confidence 344666777777777 688877542 5677788888877765 59999983
No 120
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=45.57 E-value=1.4e+02 Score=29.07 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHccC---ceeEEEEeccccccccccccc-ChHHHHHH---HHHHHhh--CCCceEEeecCCCccCCC
Q 036715 115 QSAVNSRIQSLMNKYKE---EFIHWDVSNEILHFDFYEQRL-GPKAALHF---FQTAHQS--DPLATLFMNEYNVVETCS 185 (362)
Q Consensus 115 ~~~~~~~i~~vv~ry~g---~v~~WDV~NE~~~~~~~~~~l-G~~~~~~a---f~~Ar~a--dP~a~L~~Ndy~~~~~~~ 185 (362)
..++...|-+.+..|+- -...|--.=|+....||...- ..+|.+.+ ....++. .|.+|+.+.--+..
T Consensus 160 Y~~~~ski~D~~~~~~s~~~vtiy~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~~lk~~yspn~~~---- 235 (355)
T COG4124 160 YDAMMSKIGDALAAYKSNQVVTIYWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLPWLKFMYSPNGGF---- 235 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCCeeEEEEcCCCCc----
Confidence 45566667777777872 356777777877766654433 34564433 3344555 78888877532110
Q ss_pred ccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCC-C--HHHHHH--------HHHHHHhCCCcEEEeeeecCC
Q 036715 186 DVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVP-N--LPLMRA--------IIDKMTTLKLPIWLTEVDISS 248 (362)
Q Consensus 186 ~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p-~--~~~~~~--------~L~~~a~~glpI~iTE~dv~~ 248 (362)
+.++...-....+|.||+..+...| + -...+. .-.+++.+++|++++|++...
T Consensus 236 ----------~~~~~yYPGd~YVDiVGL~~ysd~~~n~~~~~~~~tyaelt~~gy~~~~~~nKPf~faElGp~~ 299 (355)
T COG4124 236 ----------KGLEAYYPGDNYVDIVGLDVYSDDPYNQGDTGRDKTYAELTGPGYNRVAGFNKPFGFAELGPEG 299 (355)
T ss_pred ----------ccchhcCCCCceeeeeeeeccccCccccccccccccHHHHhcCcchhhhhcCCceeeecccccC
Confidence 1111222233468889998887553 1 011111 123556899999999999875
No 121
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=45.22 E-value=4e+02 Score=28.16 Aligned_cols=132 Identities=11% Similarity=0.142 Sum_probs=66.6
Q ss_pred ccCCCcccchhHHHHHHHHHhcCcE--EEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEEEecc
Q 036715 64 EAEQGKVNYTVADQMMEFVRANKLI--VRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNE 141 (362)
Q Consensus 64 Ep~~G~~~~~~~D~~v~~a~~~gi~--v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE 141 (362)
-+--+.-.|+....+.+....-.+. .||.+++ +|-. .++ ..+..+|+..+..--+.|+..|-+|+
T Consensus 56 ~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~v--------g~~~-ypd----dvv~~~v~~a~~~Gid~~rifd~lnd 122 (593)
T PRK14040 56 IRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLL--------GYRH-YAD----DVVERFVERAVKNGMDVFRVFDAMND 122 (593)
T ss_pred ccccCCCHHHHHHHHHHhCCCCeEEEEecCccee--------cccc-CcH----HHHHHHHHHHHhcCCCEEEEeeeCCc
Confidence 3445555677766666654332221 2333322 2322 111 23455666666665566777777777
Q ss_pred cccc----------cc-------c--ccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHH
Q 036715 142 ILHF----------DF-------Y--EQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELR 202 (362)
Q Consensus 142 ~~~~----------~~-------~--~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~ 202 (362)
..+. .. + ...--.+|+....+.+.++.. -.|.+-|-.-+- .+....++++.|+
T Consensus 123 ~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Ga-d~i~i~Dt~G~l-------~P~~~~~lv~~lk 194 (593)
T PRK14040 123 PRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGV-DSLCIKDMAGLL-------KPYAAYELVSRIK 194 (593)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCC-CEEEECCCCCCc-------CHHHHHHHHHHHH
Confidence 5320 00 0 001113666677777766543 356666644322 2455566666666
Q ss_pred Hc-CCcccEEEeeccCCC
Q 036715 203 RS-GVSTDGIGLQGHFTV 219 (362)
Q Consensus 203 ~~-G~~iDgIG~q~H~~~ 219 (362)
+. ++| ||+|+|-..
T Consensus 195 ~~~~~p---i~~H~Hnt~ 209 (593)
T PRK14040 195 KRVDVP---LHLHCHATT 209 (593)
T ss_pred HhcCCe---EEEEECCCC
Confidence 53 233 677777644
No 122
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=45.04 E-value=23 Score=27.08 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=17.9
Q ss_pred EEecCCCCcCCCCeEEEEeccCCC
Q 036715 2 HVTNGHGDILQGAVIKIKQVSKDF 25 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~~~f 25 (362)
+|+ .+|+||+||-|++..-...|
T Consensus 13 ~V~-~~G~Pv~gAyVRLLD~sgEF 35 (85)
T PF07210_consen 13 RVT-RDGEPVGGAYVRLLDSSGEF 35 (85)
T ss_pred EEe-cCCcCCCCeEEEEEcCCCCe
Confidence 456 88999999998887766666
No 123
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=44.99 E-value=2.6e+02 Score=25.93 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=14.9
Q ss_pred CCcccchhHHHHHHHHHhcCc
Q 036715 67 QGKVNYTVADQMMEFVRANKL 87 (362)
Q Consensus 67 ~G~~~~~~~D~~v~~a~~~gi 87 (362)
.|..|++...+.++++.++|+
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv 32 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGV 32 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCC
Confidence 466777777777777777665
No 124
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=44.82 E-value=1e+02 Score=30.63 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCC-CCHHHHHHHHHHHHhCCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcC
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTV-PNLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSH 269 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~-p~~~~~~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~ 269 (362)
..++.+-|+..++.| |||+.+...... .....+..+++.-.+.|..|.|+ +|+... .....+.+..+++....|
T Consensus 16 ~~dw~~di~~A~~~G--IDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~S-fD~~~~--~~~~~~~~~~~i~~y~~~ 90 (386)
T PF03659_consen 16 QEDWEADIRLAQAAG--IDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFS-FDMNSL--GPWSQDELIALIKKYAGH 90 (386)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEE-ecccCC--CCCCHHHHHHHHHHHcCC
Confidence 456666666656665 899888776322 34556666776666778888887 777542 111225566677777777
Q ss_pred CC
Q 036715 270 PS 271 (362)
Q Consensus 270 p~ 271 (362)
|+
T Consensus 91 pa 92 (386)
T PF03659_consen 91 PA 92 (386)
T ss_pred hh
Confidence 75
No 125
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=43.87 E-value=30 Score=33.81 Aligned_cols=62 Identities=16% Similarity=0.411 Sum_probs=47.0
Q ss_pred chhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEEEecc
Q 036715 72 YTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNE 141 (362)
Q Consensus 72 ~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE 141 (362)
+.-.+++++.|+++||++. |+|+. -.|+.-..+...++.+.|...++.+.+++ .+..||. ||
T Consensus 251 ~~F~e~~L~~ake~~I~~v---l~~P~--V~~~~~~~~~~~~~~~~w~~~i~~l~~~~--~~~~~dm-n~ 312 (345)
T PF07611_consen 251 FFFLEKFLKLAKENGIPVV---LWWPK--VSPPYEKLYKELKVYESWWPIIKKLAKEY--GIPFLDM-NE 312 (345)
T ss_pred HHHHHHHHHHHHHcCCcEE---EEEec--cCHHHHHHHHhhchhhHHHHHHHHHHhcC--CceEecc-cC
Confidence 4457899999999999984 67764 35555544445567889999999999988 4778884 77
No 126
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=43.73 E-value=29 Score=27.18 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=20.8
Q ss_pred CCCCcCCCCeEEEEeccCCCceEEeec
Q 036715 6 GHGDILQGAVIKIKQVSKDFPLGSAIA 32 (362)
Q Consensus 6 ~~g~p~~~a~v~v~~~~~~f~fG~a~~ 32 (362)
.+|+||+||+|++-..+.+-.++.+..
T Consensus 23 ~tg~Pv~ga~V~l~~~~~~~~l~~g~T 49 (97)
T PF11974_consen 23 STGKPVAGAEVELYDSRNGQVLASGKT 49 (97)
T ss_pred CCCCccCCCEEEEEECCCCcEeeeeee
Confidence 579999999999976355557776654
No 127
>PRK12569 hypothetical protein; Provisional
Probab=43.55 E-value=2.1e+02 Score=26.61 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccc------cCCChHHHHHHHHHHH---HHHHHHccCceeEEEEeccc
Q 036715 72 YTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWV------RNLTGFQLQSAVNSRI---QSLMNKYKEEFIHWDVSNEI 142 (362)
Q Consensus 72 ~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~------~~~~~~~~~~~~~~~i---~~vv~ry~g~v~~WDV~NE~ 142 (362)
....++.|++|+++|+.|=.|+ ..|+-. -.++++++++.+..-| ..++...+.++.+-- |
T Consensus 46 p~~M~~tv~lA~~~~V~IGAHP-------syPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~~~~~g~~l~hVK----P 114 (245)
T PRK12569 46 PNIMRRTVELAKAHGVGIGAHP-------GFRDLVGFGRRHINASPQELVNDVLYQLGALREFARAHGVRLQHVK----P 114 (245)
T ss_pred HHHHHHHHHHHHHcCCEeccCC-------CCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEec----C
Confidence 3456889999999999999997 245432 2367888777766555 445666666665432 2
Q ss_pred cccccccccc-ChHHHHHHHHHHHhhCCCceEEee
Q 036715 143 LHFDFYEQRL-GPKAALHFFQTAHQSDPLATLFMN 176 (362)
Q Consensus 143 ~~~~~~~~~l-G~~~~~~af~~Ar~adP~a~L~~N 176 (362)
|+-.+-..- .++......+++++.+|+..|+.-
T Consensus 115 -HGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~ 148 (245)
T PRK12569 115 -HGALYMHAARDEALARLLVEALARLDPLLILYCM 148 (245)
T ss_pred -CHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEec
Confidence 322221111 235666777889999999887664
No 128
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=43.00 E-value=21 Score=35.13 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=17.7
Q ss_pred EEecCCCCcCCCCeEEEEecc
Q 036715 2 HVTNGHGDILQGAVIKIKQVS 22 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~ 22 (362)
+|+|++|+||+||.|.|+...
T Consensus 301 ~V~d~~g~pv~~A~V~v~~~~ 321 (372)
T cd03868 301 FVRDASGNPIEDATIMVAGID 321 (372)
T ss_pred EEEcCCCCcCCCcEEEEEecc
Confidence 588999999999999998644
No 129
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=42.92 E-value=2.9e+02 Score=25.87 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=14.5
Q ss_pred CcccchhHHHHHHHHHhcCc
Q 036715 68 GKVNYTVADQMMEFVRANKL 87 (362)
Q Consensus 68 G~~~~~~~D~~v~~a~~~gi 87 (362)
|..|++...++++|+.++|+
T Consensus 15 g~iD~~~~~~li~~l~~~Gv 34 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGI 34 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCC
Confidence 66777777777777777766
No 130
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=42.80 E-value=63 Score=31.50 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=56.0
Q ss_pred HHHHHHHhcCcEEEEEEeecCCCCCCCccccCC-Ch-HHHHHHHHHHHHHHHHHccCceeEEEEecccccc-cccccccC
Q 036715 77 QMMEFVRANKLIVRGHNIFWENPKYNPTWVRNL-TG-FQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHF-DFYEQRLG 153 (362)
Q Consensus 77 ~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~-~~-~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~-~~~~~~lG 153 (362)
..++.|.+||++|.|- ++-.. ...+.|+..+ .. ++.+..+.+-+-+++..|+ ++.|-|-=|.... ....+.+
T Consensus 50 ~~idaAHknGV~Vlgt-i~~e~-~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yG--fDGw~iN~E~~~~~~~~~~~l- 124 (339)
T cd06547 50 DWINAAHRNGVPVLGT-FIFEW-TGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYG--FDGWLINIETELGDAEKAKRL- 124 (339)
T ss_pred HHHHHHHhcCCeEEEE-EEecC-CCchHHHHHHhccCcccchHHHHHHHHHHHHhC--CCceEeeeeccCCcHHHHHHH-
Confidence 4688999999999984 44221 1234565543 22 4455666677777888873 6667776665321 1001111
Q ss_pred hHHHHHHHHHHHhhCCCceEEe
Q 036715 154 PKAALHFFQTAHQSDPLATLFM 175 (362)
Q Consensus 154 ~~~~~~af~~Ar~adP~a~L~~ 175 (362)
.++++...+.+++..|..+++-
T Consensus 125 ~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 125 IAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred HHHHHHHHHHHhhcCCCcEEEE
Confidence 1455666777777788877754
No 131
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=42.79 E-value=2.3e+02 Score=29.97 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhCCCceEEeecCCCcc--CCC---ccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHH
Q 036715 155 KAALHFFQTAHQSDPLATLFMNEYNVVE--TCS---DVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAII 229 (362)
Q Consensus 155 ~~~~~af~~Ar~adP~a~L~~Ndy~~~~--~~~---~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L 229 (362)
++...|.+.||++.-.-.++..+.+... .+. +.......|...++.|.+.| +|.|.+..- |+..+.+..+
T Consensus 83 ~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g--vD~l~~ET~---~~~~Ea~a~~ 157 (612)
T PRK08645 83 EINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFREQIDALLEEG--VDGLLLETF---YDLEELLLAL 157 (612)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCEEEEEcc---CCHHHHHHHH
Confidence 5677888888876522233444333211 111 11222345666777777776 688777543 5677888888
Q ss_pred HHHHhCC-CcEEEe
Q 036715 230 DKMTTLK-LPIWLT 242 (362)
Q Consensus 230 ~~~a~~g-lpI~iT 242 (362)
+.+.+.+ +|+|+|
T Consensus 158 ~a~~~~~~~p~~~S 171 (612)
T PRK08645 158 EAAREKTDLPIIAQ 171 (612)
T ss_pred HHHHHhCCCcEEEE
Confidence 8777665 999987
No 132
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=42.78 E-value=1.7e+02 Score=28.32 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCcccEEEeeccCCCC--CHHH-------HHHHHHHHHhCCCcEEEeeeec
Q 036715 192 DSYISRLRELRRSGVSTDGIGLQGHFTVP--NLPL-------MRAIIDKMTTLKLPIWLTEVDI 246 (362)
Q Consensus 192 ~~y~~~i~~l~~~G~~iDgIG~q~H~~~p--~~~~-------~~~~L~~~a~~glpI~iTE~dv 246 (362)
+...+.++.+.+.+ +.-+|+|.|+++. +.+. +.+..+++.+.|.+ +..+|+
T Consensus 148 ~e~~~~~~~~~~~~--l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~--~~~id~ 207 (368)
T cd06810 148 SEARAALERAKELD--LRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFP--LEMLDL 207 (368)
T ss_pred HHHHHHHHHHHhCC--CcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhcCCC--CCEEEe
Confidence 45556666666655 8889999999763 3333 33444444444554 444554
No 133
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=42.75 E-value=88 Score=30.74 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=31.9
Q ss_pred ceeeeCCCcEEEEe---eEE-EEEEeCC-eeeEEEEEEecCCCeeEEEEeC
Q 036715 317 VTGHTDAHGSYSFY---GFL-VSVKYGN-RTANSTFSLCRGDETRHVTIRL 362 (362)
Q Consensus 317 ~~~~td~~G~~~~~---gf~-v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 362 (362)
....||.+|.|.+. |-+ |+|+..| ...++++.+...+.+..+.+.|
T Consensus 324 ~~~~Td~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~v~v~~~g~~~~~~~~l 374 (374)
T cd03858 324 HDVTTAEDGDYWRLLLPGTYNVTASAPGYEPQTKSVVVPNDNSAVVVDFTL 374 (374)
T ss_pred eeeEECCCceEEEecCCEeEEEEEEEcCcceEEEEEEEecCCceEEEeeEC
Confidence 45789999999874 333 8888877 5567777777733444666654
No 134
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=42.66 E-value=21 Score=35.34 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.7
Q ss_pred EEecC-CCCcCCCCeEEEEeccC
Q 036715 2 HVTNG-HGDILQGAVIKIKQVSK 23 (362)
Q Consensus 2 ~v~d~-~g~p~~~a~v~v~~~~~ 23 (362)
.|+|+ +|+||+||+|+|+...+
T Consensus 302 ~V~D~~~g~pl~~AtV~V~g~~~ 324 (375)
T cd03863 302 FVLDATDGRGILNATISVADINH 324 (375)
T ss_pred EEEeCCCCCCCCCeEEEEecCcC
Confidence 58897 79999999999987654
No 135
>COG2160 AraA L-arabinose isomerase [Carbohydrate transport and metabolism]
Probab=42.57 E-value=77 Score=31.55 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=44.3
Q ss_pred cEEEeeccCCCCCHHHHHH----HHHHHH-hCCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEe
Q 036715 209 DGIGLQGHFTVPNLPLMRA----IIDKMT-TLKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWA 279 (362)
Q Consensus 209 DgIG~q~H~~~p~~~~~~~----~L~~~a-~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg 279 (362)
=+||.|-..+.+....++. ..+.++ ...+|+.|.=.++-++ ++...++.+.+-.-+.|.|++.|-
T Consensus 11 FviGsq~lyg~e~le~v~~~a~~iV~~ln~~~~~P~kiv~k~l~tS------~d~i~~~~~~an~~d~cag~Itwm 80 (497)
T COG2160 11 FVIGSQHLYGEETLEQVEQHAEGIVDQLNEEAKLPYKIVLKPLITS------PDEITAICREANYDDRCAGVITWL 80 (497)
T ss_pred EEecchhhcCHHHHHHHHHHHHHHHHHhhhhcCCCeEEEeccccCC------HHHHHHHHHHhccCccceeEEEEE
Confidence 3678876666665554443 344443 4678998887777663 455566677777778999999995
No 136
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=42.36 E-value=3.9e+02 Score=27.31 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=34.0
Q ss_pred cccchhHHHHHHHHHhcC--cEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEEEecccc
Q 036715 69 KVNYTVADQMMEFVRANK--LIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEIL 143 (362)
Q Consensus 69 ~~~~~~~D~~v~~a~~~g--i~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~ 143 (362)
.-.|+....+-+.+..-. |-.||.+++=.. ..|+ ..++.|++..+.+--+.++..|-+|+..
T Consensus 69 edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~--~ypd-----------dvv~~fv~~a~~~Gidi~Rifd~lnd~~ 132 (468)
T PRK12581 69 EDPWERLRTLKKGLPNTRLQMLLRGQNLLGYR--HYAD-----------DIVDKFISLSAQNGIDVFRIFDALNDPR 132 (468)
T ss_pred CCHHHHHHHHHHhCCCCceeeeeccccccCcc--CCcc-----------hHHHHHHHHHHHCCCCEEEEcccCCCHH
Confidence 334666666655554333 334565543111 1221 2344567777676667778888888764
No 137
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=42.05 E-value=98 Score=31.15 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=54.4
Q ss_pred HHHHHHHHHhc-CcEEEEEEeecCCCCCCC-cccc-CCChHHHHHHHHHHHHHHHHHccC-ceeEEEEeccccccccccc
Q 036715 75 ADQMMEFVRAN-KLIVRGHNIFWENPKYNP-TWVR-NLTGFQLQSAVNSRIQSLMNKYKE-EFIHWDVSNEILHFDFYEQ 150 (362)
Q Consensus 75 ~D~~v~~a~~~-gi~v~GH~L~W~~~~~~P-~W~~-~~~~~~~~~~~~~~i~~vv~ry~g-~v~~WDV~NE~~~~~~~~~ 150 (362)
+|.+.+||... ..-+|=-.++|++- .- .+=. .-+.+.|.+.|.+|++.+|+-|.| ||+ |- |..+
T Consensus 338 ~dpl~dFA~~~S~~YLRREvIvWGDc--VKLRYG~~peDsP~LW~~M~~Yt~~~A~iF~G~RiD-----NC--HSTP--- 405 (423)
T PF14701_consen 338 ADPLVDFASPDSRAYLRREVIVWGDC--VKLRYGSKPEDSPFLWKHMKEYTELMAKIFHGFRID-----NC--HSTP--- 405 (423)
T ss_pred CchhhhhcCCcccceEEEEEEecCce--eeecCCCCCCCCHHHHHHHHHHHHHHHHhcCeeeee-----cC--CCCc---
Confidence 57888888844 35667788899852 11 0000 012356899999999999999999 564 42 3222
Q ss_pred ccChHHHHHHHHHHHhhCCC
Q 036715 151 RLGPKAALHFFQTAHQSDPL 170 (362)
Q Consensus 151 ~lG~~~~~~af~~Ar~adP~ 170 (362)
-...+...++||++.|+
T Consensus 406 ---lhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 406 ---LHVAEYLLDAARKVNPN 422 (423)
T ss_pred ---HHHHHHHHHHHHhhCCC
Confidence 24456678899999997
No 138
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=41.93 E-value=51 Score=32.79 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=31.5
Q ss_pred ceeeeCCCcEEEEe----eEE-EEEEeCC-eeeEEEEEEecCCCeeEEEEeC
Q 036715 317 VTGHTDAHGSYSFY----GFL-VSVKYGN-RTANSTFSLCRGDETRHVTIRL 362 (362)
Q Consensus 317 ~~~~td~~G~~~~~----gf~-v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 362 (362)
...+||.+|.| +| |-+ |+|+..| .+.+++++|..+..+ .++++|
T Consensus 342 ~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~~~t~~v~V~~~~~~-~~df~L 391 (392)
T cd03864 342 HDVTSGTLGDY-FRLLLPGTYTVTASAPGYQPSTVTVTVGPAEAT-LVNFQL 391 (392)
T ss_pred cceEECCCCcE-EecCCCeeEEEEEEEcCceeEEEEEEEcCCCcE-EEeeEe
Confidence 35688999999 66 334 8999888 567778888877554 555543
No 139
>COG3233 Predicted deacetylase [General function prediction only]
Probab=41.34 E-value=2.1e+02 Score=26.21 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhC--CCce-EEe----ecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC----CC--
Q 036715 155 KAALHFFQTAHQSD--PLAT-LFM----NEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV----PN-- 221 (362)
Q Consensus 155 ~~~~~af~~Ar~ad--P~a~-L~~----Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~----p~-- 221 (362)
.++...-+++-+.+ |... |++ |+|.+ ++..+|++++.++.++| |-+++|++-.. |+
T Consensus 18 ~~~~~i~~~ide~~~~~~t~lLViPn~~~~~~l--------~~d~rf~~~l~~r~e~G---del~lHGy~h~d~~~~gEF 86 (233)
T COG3233 18 PTLSNIDAAIDEYGAQNSTVLLVIPNHANDYPL--------SKDPRFVDLLTEREEEG---DELVLHGYDHIDTKRRGEF 86 (233)
T ss_pred hhHHHHHHHHHHhCCCCceEEEEeeccCCCCCc--------ccChHHHHHHHHHHhcC---CEEEEechhhccccCcccc
Confidence 44455555555544 3444 333 45553 13478999999999999 77888886432 11
Q ss_pred ------H--HHHHHHHHHHHhCCCcEEE
Q 036715 222 ------L--PLMRAIIDKMTTLKLPIWL 241 (362)
Q Consensus 222 ------~--~~~~~~L~~~a~~glpI~i 241 (362)
. ..+...++.|...|.|+++
T Consensus 87 ~~l~~~eA~~RL~~a~~~l~~~G~~~~~ 114 (233)
T COG3233 87 ACLRAHEARLRLMAAIEELEALGFPLRG 114 (233)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCccee
Confidence 1 2466777788889999554
No 140
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=41.34 E-value=2.2e+02 Score=26.34 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHhcCcEEEEEEeecCCCCCCCcccc------CCChHHHHHHHHHHHHH---HHHHccCceeEEEEecccc
Q 036715 73 TVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVR------NLTGFQLQSAVNSRIQS---LMNKYKEEFIHWDVSNEIL 143 (362)
Q Consensus 73 ~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~------~~~~~~~~~~~~~~i~~---vv~ry~g~v~~WDV~NE~~ 143 (362)
...++.|++|++||+.+-.|+ ..|+-.- .++++++.+.+.=-|-. ++.-=++++.+-- |
T Consensus 44 ~~M~rtV~lA~e~gV~IGAHP-------gyPDl~gFGRr~m~~~~~e~~a~~lYQiGAL~a~~~a~G~~~~hVK----p- 111 (252)
T COG1540 44 LTMRRTVRLAKENGVAIGAHP-------GYPDLVGFGRREMALSPEELYAQVLYQIGALQAFARAQGGVVQHVK----P- 111 (252)
T ss_pred HHHHHHHHHHHHcCCeeccCC-------CCccccccCccccCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEec----c-
Confidence 457899999999999999997 3565432 35788777655544433 4444445555432 2
Q ss_pred cccccccccCh-HHHHHHHHHHHhhCCCceEEe
Q 036715 144 HFDFYEQRLGP-KAALHFFQTAHQSDPLATLFM 175 (362)
Q Consensus 144 ~~~~~~~~lG~-~~~~~af~~Ar~adP~a~L~~ 175 (362)
|+-.+...-.+ .......+++++.||+..|+.
T Consensus 112 HGALYN~~a~D~~la~av~~av~~~dp~L~l~~ 144 (252)
T COG1540 112 HGALYNQAAKDRALADAVAEAVAAFDPSLILMG 144 (252)
T ss_pred cHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEe
Confidence 33333333333 344455678889999999875
No 141
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=41.30 E-value=2.8e+02 Score=26.24 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=38.3
Q ss_pred CCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEE
Q 036715 66 EQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHW 136 (362)
Q Consensus 66 ~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~W 136 (362)
+.|+.|++...++++|+.++|+.- ++-.. +-+=...++.+|.++.+ +.++.+.+||+.-.
T Consensus 14 ~dg~iD~~~l~~lv~~~~~~Gv~g----i~v~G---stGE~~~Ls~~Er~~l~----~~~~~~~~g~~pvi 73 (294)
T TIGR02313 14 RNGDIDEEALRELIEFQIEGGSHA----ISVGG---TSGEPGSLTLEERKQAI----ENAIDQIAGRIPFA 73 (294)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCE----EEECc---cCcccccCCHHHHHHHH----HHHHHHhCCCCcEE
Confidence 468999999999999999998742 11111 22234457777755444 45555567776443
No 142
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=41.15 E-value=21 Score=35.53 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.1
Q ss_pred EEecCCCCcCCCCeEEEEecc
Q 036715 2 HVTNGHGDILQGAVIKIKQVS 22 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~~ 22 (362)
.|+|++|+||+||.|.|+.+.
T Consensus 323 ~V~D~~g~pi~~A~V~v~g~~ 343 (395)
T cd03867 323 FVKDKDGNPIKGARISVRGIR 343 (395)
T ss_pred EEEcCCCCccCCeEEEEeccc
Confidence 589999999999999998654
No 143
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.94 E-value=49 Score=32.32 Aligned_cols=67 Identities=7% Similarity=0.042 Sum_probs=42.5
Q ss_pred ccCCCcccchhHHHHHHHHHhcCcEEE------EEEeecCCCCCCCccc------------------cCCChHHHHHHHH
Q 036715 64 EAEQGKVNYTVADQMMEFVRANKLIVR------GHNIFWENPKYNPTWV------------------RNLTGFQLQSAVN 119 (362)
Q Consensus 64 Ep~~G~~~~~~~D~~v~~a~~~gi~v~------GH~L~W~~~~~~P~W~------------------~~~~~~~~~~~~~ 119 (362)
.+..|.|.-+....++++|+++||.|. ||+..|-. ..|.-. ...+.++..+.++
T Consensus 77 ~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~--~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~ 154 (357)
T cd06563 77 TPYGGFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALA--AYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLE 154 (357)
T ss_pred CccCceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHH--hCccccCCCCCCccccccCcCCCccCCCChhHHHHHH
Confidence 344567777778899999999999875 88766532 122111 1123345566666
Q ss_pred HHHHHHHHHccCc
Q 036715 120 SRIQSLMNKYKEE 132 (362)
Q Consensus 120 ~~i~~vv~ry~g~ 132 (362)
+-+++++.-|.++
T Consensus 155 ~ll~E~~~lF~~~ 167 (357)
T cd06563 155 DVLDEVAELFPSP 167 (357)
T ss_pred HHHHHHHHhCCCC
Confidence 7777777766543
No 144
>PF02383 Syja_N: SacI homology domain; InterPro: IPR002013 Synaptic vesicles are recycled with remarkable speed and precision in nerve terminals. A major recycling pathway involves clathrin-mediated endocytosis at endocytic zones located around sites of release. Different 'accessory' proteins linked to this pathway have been shown to alter the shape and composition of lipid membranes, to modify membrane-coat protein interactions, and to influence actin polymerisation. These include the GTPase dynamin, the lysophosphatidic acid acyl transferase endophilin, and the phosphoinositide phosphatase synaptojanin []. The recessive suppressor of secretory defect in yeast Golgi and yeast actin function belongs to this family. This protein may be involved in the coordination of the activities of the secretory pathway and the actin cytoskeleton. Human synaptojanin which may be localised on coated endocytic intermediates in nerve terminals also belongs to this family.; GO: 0042578 phosphoric ester hydrolase activity; PDB: 3LWT_X.
Probab=40.39 E-value=86 Score=29.98 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=28.5
Q ss_pred cEEEEE-EeecCCCCCCCccc--c--CC--ChHHHHHHHHHHHHHHHHHccCceeEEEEe
Q 036715 87 LIVRGH-NIFWENPKYNPTWV--R--NL--TGFQLQSAVNSRIQSLMNKYKEEFIHWDVS 139 (362)
Q Consensus 87 i~v~GH-~L~W~~~~~~P~W~--~--~~--~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~ 139 (362)
+.+||- +|+|.. .|+.- . .+ +.++-..++.+|.+.+..+| |.|..-+.+
T Consensus 216 vqiRGSVPl~W~Q---~~~~~~~p~i~i~~~~~~~~~af~kHf~~L~~~Y-~~i~~VNLl 271 (319)
T PF02383_consen 216 VQIRGSVPLFWSQ---PPNLKYKPPIKISRSSEENQPAFKKHFDELLKRY-GPIIIVNLL 271 (319)
T ss_dssp EEEEE---SBS--------SSS----------HHHHHHHHHHHHHHHHHH-SEEEEEEE-
T ss_pred eEecCCCCceeEc---CCCCCCCCCeEEEeccchhHHHHHHHHHHHHHhc-CceEEEEcc
Confidence 457884 566764 23221 1 11 34567889999999999999 778777777
No 145
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=40.06 E-value=2.1e+02 Score=28.28 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=73.9
Q ss_pred ccChHHHHHHHHHHHhhCCCceEEeecCCC-----ccCCCccchhHHHHHHHHHHHHHcCC-cccEEE--eec------c
Q 036715 151 RLGPKAALHFFQTAHQSDPLATLFMNEYNV-----VETCSDVNSMVDSYISRLRELRRSGV-STDGIG--LQG------H 216 (362)
Q Consensus 151 ~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~-----~~~~~~~~~~~~~y~~~i~~l~~~G~-~iDgIG--~q~------H 216 (362)
..+.+|...+|+.+|+..|+.- +..++. +.... ...+.+.++.|+++|. .+-|-| +.. |
T Consensus 119 ~~~~~y~~~~~~~ik~~~p~~~--i~a~s~~ei~~~~~~~-----~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~ 191 (370)
T COG1060 119 ELSLEYYEELFRTIKEEFPDLH--IHALSAGEILFLAREG-----GLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIH 191 (370)
T ss_pred CcchHHHHHHHHHHHHhCcchh--hcccCHHHhHHHHhcc-----CCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhh
Confidence 3445799999999999999633 233322 11111 1234555778888874 122222 211 2
Q ss_pred CCCC--CHHHHHHHHHHHHhCCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEeeec
Q 036715 217 FTVP--NLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAALH 282 (362)
Q Consensus 217 ~~~p--~~~~~~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d 282 (362)
. .+ +.+.-.+++++..++|+|--.|=+=-.. .+.+..++.+..+-.+=-..++...|+.|.|..
T Consensus 192 ~-p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~-E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p 257 (370)
T COG1060 192 C-PPKKSPEEWLEIHERAHRLGIPTTATMLLGHV-ETREDRIDHLEHIRDLQDETGGFQEFIPLRFRP 257 (370)
T ss_pred C-CCCCCHHHHHHHHHHHHHcCCCccceeEEEec-CCHHHHHHHHHHHHHHHHHhCCcEEEEcccccC
Confidence 2 22 5667778899989999997666543332 234555666655544434457799999999863
No 146
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=39.54 E-value=1.2e+02 Score=28.49 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=41.7
Q ss_pred cccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCC
Q 036715 148 YEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFT 218 (362)
Q Consensus 148 ~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~ 218 (362)
|.+..|.+|+..++...++.+=.|++|+++-.+ ..+-++++.+.++|. -||.|++.+
T Consensus 91 FDdg~~~~~t~~iL~iLkk~~vkATFFv~G~~i-----------~~~p~l~k~i~~~Gh---eIGnHT~sH 147 (268)
T TIGR02873 91 INVAWGNEYLPEILQILKKHDVKATFFLEGKWV-----------KENSQLAKMIVEQGH---EIGNHAYNH 147 (268)
T ss_pred EeCCCCcchHHHHHHHHHHCCCCEEEEeehHhh-----------hHCHHHHHHHHHCCC---EEEecCCcC
Confidence 334456689999999999999999999986442 233456788888884 577777544
No 147
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.31 E-value=70 Score=30.65 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCC-------------CCCHHHHHHHHHHHHhCCCcEEEee
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFT-------------VPNLPLMRAIIDKMTTLKLPIWLTE 243 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~-------------~p~~~~~~~~L~~~a~~glpI~iTE 243 (362)
....++.++.++++++|+|+|.+..... ...-++..+++++|.+.|+.+.+..
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i 93 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNI 93 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 3566778888889999999997652210 1012345577777777788776543
No 148
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=38.52 E-value=2.6e+02 Score=25.58 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHh
Q 036715 253 EKQAVYLEQVLREGF 267 (362)
Q Consensus 253 ~~QA~~~~~~~~~~~ 267 (362)
+.|.+.+++.+++|.
T Consensus 107 ~~Q~~vF~~ql~lA~ 121 (255)
T PF01026_consen 107 EVQEEVFERQLELAK 121 (255)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 149
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.49 E-value=38 Score=32.65 Aligned_cols=33 Identities=12% Similarity=0.337 Sum_probs=25.8
Q ss_pred cCCCcccchhHHHHHHHHHhcCcEEE------EEEeecC
Q 036715 65 AEQGKVNYTVADQMMEFVRANKLIVR------GHNIFWE 97 (362)
Q Consensus 65 p~~G~~~~~~~D~~v~~a~~~gi~v~------GH~L~W~ 97 (362)
+..|.|.-+....++++|+++||.|. ||+..|-
T Consensus 74 ~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~ 112 (326)
T cd06564 74 ANDGYYTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFT 112 (326)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHH
Confidence 34566777778899999999999875 7876663
No 150
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=38.42 E-value=66 Score=32.76 Aligned_cols=61 Identities=15% Similarity=0.316 Sum_probs=41.1
Q ss_pred cchhHHHHHHHHHhcCcEEE------EEEeecCCCC---CCCccccC--------CC--hHHHHHHHHHHHHHHHHHccC
Q 036715 71 NYTVADQMMEFVRANKLIVR------GHNIFWENPK---YNPTWVRN--------LT--GFQLQSAVNSRIQSLMNKYKE 131 (362)
Q Consensus 71 ~~~~~D~~v~~a~~~gi~v~------GH~L~W~~~~---~~P~W~~~--------~~--~~~~~~~~~~~i~~vv~ry~g 131 (362)
.-+.+-.+|++|+-+||+|. ||+.-|+... .+|.|-.. ++ .+...+.+.+++++|.+-|.+
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~ 327 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPD 327 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcH
Confidence 33345588999999999987 9999996421 23444321 11 235677888888888887753
No 151
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=38.31 E-value=1.1e+02 Score=29.47 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHHh--CCCcEEEeeee
Q 036715 192 DSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTT--LKLPIWLTEVD 245 (362)
Q Consensus 192 ~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~--~glpI~iTE~d 245 (362)
+-|...++.+.++| +|.+++..= |+..+....++.+.+ ..+|+|||=.-
T Consensus 148 ~~~k~qle~~~~~g--vD~L~fETi---p~~~EA~a~l~~l~~~~~~~p~~is~t~ 198 (317)
T KOG1579|consen 148 DFFKQQLEVFLEAG--VDLLAFETI---PNVAEAKAALELLQELGPSKPFWISFTI 198 (317)
T ss_pred HHHHHHHHHHHhCC--CCEEEEeec---CCHHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 33556777888888 899988753 556677777777766 67899998433
No 152
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=37.62 E-value=1.8e+02 Score=27.94 Aligned_cols=166 Identities=16% Similarity=0.251 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHcc------CceeEEEEecc-ccccc
Q 036715 74 VADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYK------EEFIHWDVSNE-ILHFD 146 (362)
Q Consensus 74 ~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~------g~v~~WDV~NE-~~~~~ 146 (362)
.+..+.+.+++-|+.|..-|=++. ....|.|+...+.+++.+. +|+++..-.. |-|.. +... ++.
T Consensus 66 d~~~l~~is~~tGv~II~~TG~y~-~~~~p~~~~~~s~e~la~~---~i~Ei~~GidgT~ikaG~Ik~--~~~~~~it-- 137 (308)
T PF02126_consen 66 DVEALREISRRTGVNIIASTGFYK-EPFYPEWVREASVEELADL---FIREIEEGIDGTGIKAGIIKE--IGSSNPIT-- 137 (308)
T ss_dssp -HHHHHHHHHHHT-EEEEEEEE-S-GGCSCHHHHTSHHHHHHHH---HHHHHHT-STTSSB-ESEEEE--EEBTTBCE--
T ss_pred CHHHHHHHHHHhCCeEEEeCCCCc-cccCChhhhcCCHHHHHHH---HHHHHHhcCCCCccchhheeE--eeccCCCC--
Confidence 457889999999999987664443 3578999998877765554 4555554333 33332 1111 111
Q ss_pred ccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC-CCHHHH
Q 036715 147 FYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV-PNLPLM 225 (362)
Q Consensus 147 ~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~-p~~~~~ 225 (362)
..+ ...++.|-++.++- .+.+.+-- ..+. ..-++.++-|.+.|++.+-|=+ +|... ++..++
T Consensus 138 ~~E----~k~lrAaa~A~~~T--G~pI~~H~-----~~g~-----~~~~e~~~il~e~Gv~~~rvvi-gH~D~~~D~~y~ 200 (308)
T PF02126_consen 138 PLE----EKVLRAAARAHKET--GAPISTHT-----GRGT-----RMGLEQLDILEEEGVDPSRVVI-GHMDRNPDLDYH 200 (308)
T ss_dssp HHH----HHHHHHHHHHHHHH--T-EEEEEE-----STTG-----TCHHHHHHHHHHTT--GGGEEE-TSGGGST-HHHH
T ss_pred HHH----HHHHHHHHHHHHHh--CCeEEEcC-----CCCC-----cCHHHHHHHHHHcCCChhHeEE-eCCCCCCCHHHH
Confidence 000 12334444444443 35554431 1111 0123456667889999898877 89864 677776
Q ss_pred HHHHHHHHhCCCcEEEeee-----ecCC-----CCChHHHHHHHHHHHHHHhc
Q 036715 226 RAIIDKMTTLKLPIWLTEV-----DISS-----KLSKEKQAVYLEQVLREGFS 268 (362)
Q Consensus 226 ~~~L~~~a~~glpI~iTE~-----dv~~-----~~~~~~QA~~~~~~~~~~~s 268 (362)
++.++ .|.=|-+--+ +... -.+++...+.+..++..-+.
T Consensus 201 ~~la~----~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~ 249 (308)
T PF02126_consen 201 RELAD----RGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIEEGYA 249 (308)
T ss_dssp HHHHH----TT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTG
T ss_pred HHHHh----cCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHHcCCc
Confidence 65554 4544443333 2211 12355566666666654443
No 153
>PRK05926 hypothetical protein; Provisional
Probab=37.59 E-value=1.2e+02 Score=29.85 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=74.4
Q ss_pred cChHHHHHHHHHHHhhCCCceEE-ee--cCCCccCCCccchhHHHHHHHHHHHHHcCC-cccEEEeeccCC------CC-
Q 036715 152 LGPKAALHFFQTAHQSDPLATLF-MN--EYNVVETCSDVNSMVDSYISRLRELRRSGV-STDGIGLQGHFT------VP- 220 (362)
Q Consensus 152 lG~~~~~~af~~Ar~adP~a~L~-~N--dy~~~~~~~~~~~~~~~y~~~i~~l~~~G~-~iDgIG~q~H~~------~p- 220 (362)
+..+|+...++.+|+..|+..+- +. +|..+..... ....+.++.|+++|+ .+-+-|...... .|
T Consensus 128 ~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~-----~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~ 202 (370)
T PRK05926 128 CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDN-----LPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPG 202 (370)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcC-----CCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCC
Confidence 34588899999999999988753 21 1111100000 012345778889987 444444533221 12
Q ss_pred --CHHHHHHHHHHHHhCCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEeeec
Q 036715 221 --NLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAALH 282 (362)
Q Consensus 221 --~~~~~~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d 282 (362)
+..+..+.++...+.|+++--| +=+....+.+..++.+..+-.+--..-+...|+-|.|..
T Consensus 203 ~~t~~e~l~~i~~a~~~Gi~~~sg-mi~G~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~ 265 (370)
T PRK05926 203 RLSSQGFLEIHKTAHSLGIPSNAT-MLCYHRETPEDIVTHMSKLRALQDKTSGFKNFILLKFAS 265 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCcccCc-eEEeCCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCC
Confidence 3455668888888999999888 433333456677776654433322334677788888754
No 154
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=37.42 E-value=70 Score=30.94 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCC--------C-CHHHHHHHHHHHHhCCCcEEEe
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTV--------P-NLPLMRAIIDKMTTLKLPIWLT 242 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~--------p-~~~~~~~~L~~~a~~glpI~iT 242 (362)
.+..++.+++++++|+|+|+|.+...... + .-++..++++.|.+.|+.+.+.
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 23 EEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTI 83 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEE
Confidence 35566778888888999998888744211 0 1233456666666677766543
No 155
>PRK09875 putative hydrolase; Provisional
Probab=36.91 E-value=3.8e+02 Score=25.50 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEEEecccccccccccccC
Q 036715 74 VADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFDFYEQRLG 153 (362)
Q Consensus 74 ~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~~~~~~lG 153 (362)
.+..+.+.+++-|+.|..-|=+| .....|.|+...+.+++.+.+.+=|..=+..- .|+ =-|+-|.-. .+ +.+.
T Consensus 62 d~~~l~~is~~tgv~Iv~~TG~y-~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt--~ik-aGvIGeiG~--~~-~~it 134 (292)
T PRK09875 62 NAQFMLDVMRETGINVVACTGYY-QDAFFPEHVATRSVQELAQEMVDEIEQGIDGT--ELK-AGIIAEIGS--SE-GKIT 134 (292)
T ss_pred CHHHHHHHHHHhCCcEEEcCcCC-CCccCCHHHhcCCHHHHHHHHHHHHHHhhccC--CCc-ccEEEEEec--CC-CCCC
Confidence 46788999999999998766444 44578999998888776555444333322210 010 011333211 11 1111
Q ss_pred hHHHHHHHHHHHhh--CCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC-CCHHHHHHHHH
Q 036715 154 PKAALHFFQTAHQS--DPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV-PNLPLMRAIID 230 (362)
Q Consensus 154 ~~~~~~af~~Ar~a--dP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~-p~~~~~~~~L~ 230 (362)
+.-+..|++|.++ .-.+.+.+-- . .+. . -.+.++-|.+.|++.+-|=+ +|... +++.++++.++
T Consensus 135 -~~E~kvl~Aaa~a~~~TG~pi~~Ht----~-~~~-----~-g~e~l~il~e~Gvd~~rvvi-~H~d~~~d~~~~~~l~~ 201 (292)
T PRK09875 135 -PLEEKVFIAAALAHNQTGRPISTHT----S-FST-----M-GLEQLALLQAHGVDLSRVTV-GHCDLKDNLDNILKMID 201 (292)
T ss_pred -HHHHHHHHHHHHHHHHHCCcEEEcC----C-Ccc-----c-hHHHHHHHHHcCcCcceEEE-eCCCCCCCHHHHHHHHH
Confidence 2233444443333 2234444331 1 110 1 12346667788998776654 68754 56677666654
No 156
>PRK10425 DNase TatD; Provisional
Probab=36.64 E-value=3.5e+02 Score=25.06 Aligned_cols=10 Identities=20% Similarity=0.830 Sum_probs=5.2
Q ss_pred HhCCCcEEEe
Q 036715 233 TTLKLPIWLT 242 (362)
Q Consensus 233 a~~glpI~iT 242 (362)
.++++||-|-
T Consensus 118 ~~~~~Pv~iH 127 (258)
T PRK10425 118 AELNMPVFMH 127 (258)
T ss_pred HHhCCCeEEE
Confidence 4455555544
No 157
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=36.24 E-value=3.2e+02 Score=30.09 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhCC---CceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHH-
Q 036715 157 ALHFFQTAHQSDP---LATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKM- 232 (362)
Q Consensus 157 ~~~af~~Ar~adP---~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~- 232 (362)
++-+.++++++.- .+..|.+|. -.++.+.-..+-|+++.++|.+.|+.|-||==.+-+-.| ...+..+..|
T Consensus 659 M~vaidAV~e~gkv~EatiCYTGDi---ldp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP--~AA~~Li~aLr 733 (1149)
T COG1038 659 MRVAIDAVREAGKVAEATICYTGDI---LDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKP--AAAYRLISALR 733 (1149)
T ss_pred hhhHHHHHHhcCCeEEEEEEecccc---CCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCH--HHHHHHHHHHH
Confidence 4566777776653 244455552 233333234678899999999999866655322222122 2222333333
Q ss_pred HhCCCcEEEeeeecC
Q 036715 233 TTLKLPIWLTEVDIS 247 (362)
Q Consensus 233 a~~glpI~iTE~dv~ 247 (362)
...++|||+---|-+
T Consensus 734 ~~~dlPIHlHTHDTs 748 (1149)
T COG1038 734 ETVDLPIHLHTHDTS 748 (1149)
T ss_pred HhcCCceEEeccCCC
Confidence 257999999766654
No 158
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=36.09 E-value=1.4e+02 Score=26.01 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=38.4
Q ss_pred cccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCC
Q 036715 150 QRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFT 218 (362)
Q Consensus 150 ~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~ 218 (362)
+...+++...+....++.+=.|.+|+++-.. ..+-+.++++.++|. -||.|++-+
T Consensus 14 Dgp~~~~t~~~l~~L~~~~ikaTfFv~g~~~-----------~~~~~~~~~i~~~Gh---eig~Ht~~H 68 (191)
T TIGR02764 14 ISWGNDYTEPILDTLKEYDVKATFFLSGSWA-----------ERHPELVKEIVKDGH---EIGSHGYRH 68 (191)
T ss_pred CCCCcccHHHHHHHHHHcCCCEEEEeccHHH-----------HHCHHHHHHHHhCCC---EEEECCcCC
Confidence 3344567788888888887779999987442 233456788889984 577776543
No 159
>PRK10785 maltodextrin glucosidase; Provisional
Probab=35.54 E-value=2.2e+02 Score=29.95 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHccC---ceeEE--EEecccccccccccccChHHHHHHHHHHHhhCCCceEEeec
Q 036715 112 FQLQSAVNSRIQSLMNKYKE---EFIHW--DVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNE 177 (362)
Q Consensus 112 ~~~~~~~~~~i~~vv~ry~g---~v~~W--DV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Nd 177 (362)
+++++.+.+--.+++.++-. -|+.| ||+++.-..... ....++++...+.+|+..|++-+ ++|
T Consensus 305 p~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~--~~~~~f~~~~~~~vk~~~pd~~l-igE 372 (598)
T PRK10785 305 EEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGA--RNNLQHVAGITQAAKEENPEAYV-LGE 372 (598)
T ss_pred HHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCc--cccHHHHHHHHHHHHhhCCCeEE-EEe
Confidence 34444443222246665532 37766 899885322110 11236788888889999999754 555
No 160
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=35.41 E-value=29 Score=34.19 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.0
Q ss_pred EEecCCCCcCCCCeEEEEec
Q 036715 2 HVTNGHGDILQGAVIKIKQV 21 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~~~ 21 (362)
+|+|.+|+||+||.|.|+..
T Consensus 292 ~V~d~~g~pi~~A~V~v~g~ 311 (363)
T cd06245 292 VVTDKAGKPISGATIVLNGG 311 (363)
T ss_pred EEEcCCCCCccceEEEEeCC
Confidence 58999999999999999864
No 161
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=34.36 E-value=2.5e+02 Score=22.63 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHHhCCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCe
Q 036715 193 SYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSV 272 (362)
Q Consensus 193 ~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v 272 (362)
...+.++.|.+.|...--..++.--...+..+.+.......++|.....-++.-... |.+.++ .+..+=+-|.|
T Consensus 15 ~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~-----~~el~~-~i~~lN~D~~V 88 (117)
T PF00763_consen 15 ELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDIS-----EEELLE-LIEKLNEDPSV 88 (117)
T ss_dssp HHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSS-----HHHHHH-HHHHHHH-TT-
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcC-----HHHHHH-HHHHHhCCCCC
Confidence 344455666666653322223221111234467777777778899888888865442 344443 34444556999
Q ss_pred eEEEEEee
Q 036715 273 SGIMLWAA 280 (362)
Q Consensus 273 ~gi~~Wg~ 280 (362)
.||++--.
T Consensus 89 ~GIlvq~P 96 (117)
T PF00763_consen 89 HGILVQLP 96 (117)
T ss_dssp SEEEEESS
T ss_pred CEEEEcCC
Confidence 99987654
No 162
>PRK05406 LamB/YcsF family protein; Provisional
Probab=34.32 E-value=2.9e+02 Score=25.70 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=60.0
Q ss_pred chhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccc------cCCChHHHHHHHHHHH---HHHHHHccCceeEEEEeccc
Q 036715 72 YTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWV------RNLTGFQLQSAVNSRI---QSLMNKYKEEFIHWDVSNEI 142 (362)
Q Consensus 72 ~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~------~~~~~~~~~~~~~~~i---~~vv~ry~g~v~~WDV~NE~ 142 (362)
....++.++.|+++|+.+=.|+ ..|+-. -.++++++.+.+.--| ..++...+.++.+-- |
T Consensus 43 p~~M~~tv~lA~~~gV~IGAHP-------gypD~~gFGRR~m~~s~~el~~~v~yQigAL~~~a~~~g~~l~hVK----P 111 (246)
T PRK05406 43 PAVMRRTVRLAKENGVAIGAHP-------GYPDLEGFGRRNMDLSPEELYALVLYQIGALQAIARAAGGRVSHVK----P 111 (246)
T ss_pred HHHHHHHHHHHHHcCCeEccCC-------CCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEeC----c
Confidence 3456889999999999999997 245432 1367888776665444 445666666766432 2
Q ss_pred cccccccccc-ChHHHHHHHHHHHhhCCCceEEee
Q 036715 143 LHFDFYEQRL-GPKAALHFFQTAHQSDPLATLFMN 176 (362)
Q Consensus 143 ~~~~~~~~~l-G~~~~~~af~~Ar~adP~a~L~~N 176 (362)
|+-.+-... -++......+++++.+|+..|+..
T Consensus 112 -HGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~ 145 (246)
T PRK05406 112 -HGALYNMAAKDPALADAVAEAVAAVDPSLILVGL 145 (246)
T ss_pred -cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEec
Confidence 332222211 235666778889999999777653
No 163
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=34.09 E-value=77 Score=30.74 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCC--------C-CHHHH--HHHHHHHHhCCCcEEEe
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTV--------P-NLPLM--RAIIDKMTTLKLPIWLT 242 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~--------p-~~~~~--~~~L~~~a~~glpI~iT 242 (362)
.+..++.++.++++++|+|+|.+..+... + .-++. .++++.|.+.|+.+.+.
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~ 85 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPI 85 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEE
Confidence 46678888999999999999998865321 0 11233 66777777788876654
No 164
>PRK08445 hypothetical protein; Provisional
Probab=32.76 E-value=4.7e+02 Score=25.43 Aligned_cols=126 Identities=15% Similarity=0.091 Sum_probs=74.8
Q ss_pred cChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccch-hHHHHHHHHHHHHHcCC-cccEEEeeccCC------CC---
Q 036715 152 LGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNS-MVDSYISRLRELRRSGV-STDGIGLQGHFT------VP--- 220 (362)
Q Consensus 152 lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~-~~~~y~~~i~~l~~~G~-~iDgIG~q~H~~------~p--- 220 (362)
+..+++...++.+|+..|+.++.- |...+-.. ..+ ......+.++.|+++|+ .+-|+|+..--. .|
T Consensus 103 ~~~e~~~~l~~~Ik~~~p~i~~~a--~s~~ei~~-~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~ 179 (348)
T PRK08445 103 LKIEWYENLVSHIAQKYPTITIHG--FSAVEIDY-IAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKL 179 (348)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEE--ccHHHHHH-HHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCC
Confidence 456899999999999999988631 11110000 000 00012456788999997 445777874321 02
Q ss_pred CHHHHHHHHHHHHhCCCcEEEee-eecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEeeec
Q 036715 221 NLPLMRAIIDKMTTLKLPIWLTE-VDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAALH 282 (362)
Q Consensus 221 ~~~~~~~~L~~~a~~glpI~iTE-~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d 282 (362)
+..+..+.++...+.|+++--|= +|.. .+.+..++.+..+-++--...+...+..|-|..
T Consensus 180 t~~~~i~~i~~a~~~Gi~~~sg~i~G~~--Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p 240 (348)
T PRK08445 180 DSDRWLEVHRQAHLIGMKSTATMMFGTV--ENDEEIIEHWERIRDLQDETGGFRAFILWSFQP 240 (348)
T ss_pred CHHHHHHHHHHHHHcCCeeeeEEEecCC--CCHHHHHHHHHHHHHHHHHhCCeeEEeccccCC
Confidence 45566788999999999998873 4543 345566665554433333334566677777643
No 165
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=32.62 E-value=3.5e+02 Score=24.37 Aligned_cols=99 Identities=12% Similarity=-0.029 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCC----CCCHHHHHHHH
Q 036715 154 PKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFT----VPNLPLMRAII 229 (362)
Q Consensus 154 ~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~----~p~~~~~~~~L 229 (362)
.+++...++.+|+..=.+.|-.|+|... ..+.+++ .+. ..+.+|--++-.... ..+.+.+.+.|
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~----------~~~~~l~-~~~-D~~l~DiK~~d~~~~~~~tG~~~~~il~nl 120 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPA----------SKLLPLA-KLC-DEVLFDLKIMDATQARDVVKMNLPRVLENL 120 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCH----------HHHHHHH-Hhc-CEEEEeeccCCHHHHHHHHCCCHHHHHHHH
Confidence 5888999999999877777777877531 2222222 111 134455554422211 12456788899
Q ss_pred HHHHhCCCcEEEeeeecCCCCChHHHHHHHHHHHH
Q 036715 230 DKMTTLKLPIWLTEVDISSKLSKEKQAVYLEQVLR 264 (362)
Q Consensus 230 ~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~ 264 (362)
+.+++.|.+++|+=.=|+.-.+.+...+-+.+++.
T Consensus 121 ~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~ 155 (213)
T PRK10076 121 RLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLI 155 (213)
T ss_pred HHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999987767652233333333444443
No 166
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=32.21 E-value=95 Score=30.51 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHHHHhcCcEEEEEEeecCCCCCCCccccC-----CChHHHHHHHHHHHHHHHHHccCceeEEE
Q 036715 77 QMMEFVRANKLIVRGHNIFWENPKYNPTWVRN-----LTGFQLQSAVNSRIQSLMNKYKEEFIHWD 137 (362)
Q Consensus 77 ~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~-----~~~~~~~~~~~~~i~~vv~ry~g~v~~WD 137 (362)
..|...++||+.+..-.+ +.-|+|.+. +++++....+.+|...+-. +-||..||
T Consensus 157 ~fv~~m~~nGvnlyalSV-----QNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~--~~rV~~pe 215 (433)
T COG5520 157 DFVLEMKNNGVNLYALSV-----QNEPDYAPTYDWCWWTPQEELRFMRQYLASINA--EMRVIIPE 215 (433)
T ss_pred HHHHHHHhCCCceeEEee-----ccCCcccCCCCcccccHHHHHHHHHHhhhhhcc--ccEEecch
Confidence 557778899999987543 346777643 4677878888888777665 34677775
No 167
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.86 E-value=86 Score=29.85 Aligned_cols=108 Identities=10% Similarity=0.086 Sum_probs=62.0
Q ss_pred CCcccchhHHHHHHHHHhcCcEEE------EEEeecCCCC---CCCc-----cccCCChHHHHHHHHHHHHHHHHHccCc
Q 036715 67 QGKVNYTVADQMMEFVRANKLIVR------GHNIFWENPK---YNPT-----WVRNLTGFQLQSAVNSRIQSLMNKYKEE 132 (362)
Q Consensus 67 ~G~~~~~~~D~~v~~a~~~gi~v~------GH~L~W~~~~---~~P~-----W~~~~~~~~~~~~~~~~i~~vv~ry~g~ 132 (362)
+|.|.-+...+++++|+++||.|. ||.-.|-... ...+ .....+.++..+.+++-+++++.-|+++
T Consensus 54 ~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~ 133 (301)
T cd06565 54 RGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSK 133 (301)
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCC
Confidence 677777778899999999999886 7765553210 0111 1112334567788888888888888764
Q ss_pred eeEE---EEeccccccccccc---ccC-----hHHHHHHHHHHHhhCCCceEEeec
Q 036715 133 FIHW---DVSNEILHFDFYEQ---RLG-----PKAALHFFQTAHQSDPLATLFMNE 177 (362)
Q Consensus 133 v~~W---DV~NE~~~~~~~~~---~lG-----~~~~~~af~~Ar~adP~a~L~~Nd 177 (362)
..+- |+.+-.. ..+.+ ..+ .+++....+.+++..+.. ++=||
T Consensus 134 ~~HIG~DE~~~~g~--~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~~~-~~W~D 186 (301)
T cd06565 134 YIHIGMDEAYDLGR--GRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKP-MMWDD 186 (301)
T ss_pred eEEECCCcccccCC--CHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCCEE-EEEhH
Confidence 3322 2221110 00100 111 256777788888877733 33344
No 168
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=31.86 E-value=3.9e+02 Score=25.61 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhC-----CCceEEeecCCCccC---CCc-----cchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCH
Q 036715 156 AALHFFQTAHQSD-----PLATLFMNEYNVVET---CSD-----VNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNL 222 (362)
Q Consensus 156 ~~~~af~~Ar~ad-----P~a~L~~Ndy~~~~~---~~~-----~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~ 222 (362)
..+.+.+.||++. |.-+.+.+..+.... ... -..-...|.+.++.|++.|+ |+|=+..-+..
T Consensus 94 in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~--D~iLiET~~D~--- 168 (311)
T COG0646 94 INQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGA--DLILIETIFDT--- 168 (311)
T ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCC--cEEEEehhccH---
Confidence 4567888888753 345555555444321 111 01134678888899999884 77777666533
Q ss_pred HHHHHHHHH----HHhC--CCcEEEee
Q 036715 223 PLMRAIIDK----MTTL--KLPIWLTE 243 (362)
Q Consensus 223 ~~~~~~L~~----~a~~--glpI~iTE 243 (362)
..+++++.. +.+. .+||+|+=
T Consensus 169 l~~KaA~~a~~~~~~~~~~~LPv~~s~ 195 (311)
T COG0646 169 LNAKAAVFAAREVFEELGVRLPVMISG 195 (311)
T ss_pred HHHHHHHHHHHHHHHhcCCcccEEEEE
Confidence 344444333 3333 38998853
No 169
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=31.46 E-value=47 Score=27.59 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=19.6
Q ss_pred CEEecCCCCcCCCCeEEEEeccC
Q 036715 1 MHVTNGHGDILQGAVIKIKQVSK 23 (362)
Q Consensus 1 i~v~d~~g~p~~~a~v~v~~~~~ 23 (362)
|+++|++|.|+.++.+++...++
T Consensus 73 i~~~d~~g~~~~~~~~~l~l~rp 95 (146)
T PF05751_consen 73 IRLTDPNGAPVSGAKLTLSLYRP 95 (146)
T ss_pred EEEEcCCCCcCcCceEEEEEECC
Confidence 46789999999999999987654
No 170
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=31.14 E-value=4.6e+02 Score=24.92 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=29.0
Q ss_pred HHHHHHHHcCC---cccEEEeeccCC-CCC-HHHHHHHHHHHHhCCCcEEEe
Q 036715 196 SRLRELRRSGV---STDGIGLQGHFT-VPN-LPLMRAIIDKMTTLKLPIWLT 242 (362)
Q Consensus 196 ~~i~~l~~~G~---~iDgIG~q~H~~-~p~-~~~~~~~L~~~a~~glpI~iT 242 (362)
+.++.|.+.|. .+=.|++|+++. .|. +..+.+.|+.+++. -.||++
T Consensus 232 d~fd~l~~eg~~~~~~~~i~lHp~i~G~p~R~~~L~~~l~~i~~~-~~VW~a 282 (297)
T TIGR03212 232 DAFDVLYAEGEGAPKMMSIGLHCRLVGRPGRIAALQRFLDYVQSH-DKVWVA 282 (297)
T ss_pred HHHHHHHHhCCCCCceEEEecCccccCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 34445666664 467788888874 453 44566777777654 348886
No 171
>PLN02417 dihydrodipicolinate synthase
Probab=30.89 E-value=4.5e+02 Score=24.57 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=51.6
Q ss_pred CCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEEEecccccc
Q 036715 66 EQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHF 145 (362)
Q Consensus 66 ~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~ 145 (362)
+.|..|++...++++++.++|+.=. . +-+ +-+=...++.+|.++.+ +.++..-+|++.-.=-+..+
T Consensus 15 ~~g~iD~~~~~~~i~~l~~~Gv~Gi--~-~~G----stGE~~~ls~~Er~~~~----~~~~~~~~~~~pvi~gv~~~--- 80 (280)
T PLN02417 15 PDGRFDLEAYDSLVNMQIENGAEGL--I-VGG----TTGEGQLMSWDEHIMLI----GHTVNCFGGKIKVIGNTGSN--- 80 (280)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEE--E-ECc----cCcchhhCCHHHHHHHH----HHHHHHhCCCCcEEEECCCc---
Confidence 4689999999999999999886321 1 111 11223356777654433 33444445666422111111
Q ss_pred cccccccChHHHHHHHHHHHhhCCCceEEeecCC
Q 036715 146 DFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179 (362)
Q Consensus 146 ~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~ 179 (362)
..+-.....+.|+++..++.+++.=|-
T Consensus 81 -------~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 81 -------STREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred -------cHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 112223344556667778887777543
No 172
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.57 E-value=87 Score=30.09 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHhcCcEEE------EEEeecCCCCCCCc-------------cc-----cCCChHHHHHHHHHHHH
Q 036715 68 GKVNYTVADQMMEFVRANKLIVR------GHNIFWENPKYNPT-------------WV-----RNLTGFQLQSAVNSRIQ 123 (362)
Q Consensus 68 G~~~~~~~D~~v~~a~~~gi~v~------GH~L~W~~~~~~P~-------------W~-----~~~~~~~~~~~~~~~i~ 123 (362)
|.|.-+....++++|+++||.|. ||+..|-.. .|. |- ...+.++..+.+.+-++
T Consensus 63 ~~yT~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~~--ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~ 140 (311)
T cd06570 63 LYYTQEQIREVVAYARDRGIRVVPEIDVPGHASAIAVA--YPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFG 140 (311)
T ss_pred CccCHHHHHHHHHHHHHcCCEEEEeecCccchHHHHHh--CHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHH
Confidence 34655667799999999999875 887666421 111 10 11223455666666666
Q ss_pred HHHHHccC
Q 036715 124 SLMNKYKE 131 (362)
Q Consensus 124 ~vv~ry~g 131 (362)
+++.-|.+
T Consensus 141 E~~~lF~~ 148 (311)
T cd06570 141 EMAELFPD 148 (311)
T ss_pred HHHHhCCC
Confidence 66666654
No 173
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=30.21 E-value=3.4e+02 Score=28.41 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHHhCCCc
Q 036715 196 SRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTTLKLP 238 (362)
Q Consensus 196 ~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~~glp 238 (362)
.+++++++.|.+|||+-+-+-+ |+.++-.+.++.|.+-|+|
T Consensus 112 rLv~kara~G~~I~gvvIsAGI--P~le~A~ElI~~L~~~G~~ 152 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGI--PSLEEAVELIEELGDDGFP 152 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCC--CcHHHHHHHHHHHhhcCce
Confidence 3577888899999998776533 4444444444444444544
No 174
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=29.97 E-value=88 Score=30.04 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeecc---------------C--CCCCHHHHHHHHHHHHhCCCcEEEe
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGH---------------F--TVPNLPLMRAIIDKMTTLKLPIWLT 242 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H---------------~--~~p~~~~~~~~L~~~a~~glpI~iT 242 (362)
.+..++.++.++++|+|+|+|-++-- + ....-++..++++.|.+.|+.+.+.
T Consensus 22 ~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~ 90 (317)
T cd06594 22 TDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTY 90 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEE
Confidence 45677888888999999999977521 0 0101234567777777778765543
No 175
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=29.86 E-value=1.9e+02 Score=26.05 Aligned_cols=51 Identities=8% Similarity=0.117 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCC
Q 036715 154 PKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFT 218 (362)
Q Consensus 154 ~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~ 218 (362)
..+.....+..++.+=.|.+|+++-.+ ..+-+.++++.++|- -||.|++.+
T Consensus 49 ~~~t~~lL~~L~~~~vkATFFv~G~~~-----------~~~p~~ir~i~~~Gh---eIgnHt~~H 99 (224)
T TIGR02884 49 NGYTPKILDVLKEKKVPAAFFVTGHYI-----------KTQPDLIKRMVDEGH---IVGNHSVHH 99 (224)
T ss_pred ccchHHHHHHHHHcCCCeEEEeechhh-----------HHCHHHHHHHHHcCC---EeeecCccC
Confidence 456677888889888889999987443 223456788899994 477777654
No 176
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=29.69 E-value=2e+02 Score=20.20 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=24.3
Q ss_pred eeeeCCCcEEEEeeEE------EEEEeCC----eeeEEEEEEecCCC
Q 036715 318 TGHTDAHGSYSFYGFL------VSVKYGN----RTANSTFSLCRGDE 354 (362)
Q Consensus 318 ~~~td~~G~~~~~gf~------v~v~~~~----~~~~~~~~~~~~~~ 354 (362)
+..||++|.+.|.+-. ..++.|. ......|.+..++.
T Consensus 20 ~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~i~~~~~ 66 (70)
T PF05738_consen 20 TVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFTITEDGD 66 (70)
T ss_dssp EEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEEECTTSC
T ss_pred EEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEEEecCCE
Confidence 4789999999999876 3344453 22344566666655
No 177
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=29.50 E-value=1.1e+02 Score=29.22 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=23.8
Q ss_pred CCCcccchhHHHHHHHHHhcCcEEE------EEEeec
Q 036715 66 EQGKVNYTVADQMMEFVRANKLIVR------GHNIFW 96 (362)
Q Consensus 66 ~~G~~~~~~~D~~v~~a~~~gi~v~------GH~L~W 96 (362)
..|.|.-+...+++++|+++||.|- ||.-.|
T Consensus 65 ~~~~yT~~di~elv~yA~~rgI~viPEiD~PGH~~a~ 101 (303)
T cd02742 65 PGGFYTYAQLKDIIEYAAARGIEVIPEIDMPGHSTAF 101 (303)
T ss_pred CCCeECHHHHHHHHHHHHHcCCEEEEeccchHHHHHH
Confidence 3456777778899999999999875 665444
No 178
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=29.31 E-value=1.1e+02 Score=30.41 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCCC--CHHHH-------HHHHHHHHhCCCcEEEeeeecCC
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTVP--NLPLM-------RAIIDKMTTLKLPIWLTEVDISS 248 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p--~~~~~-------~~~L~~~a~~glpI~iTE~dv~~ 248 (362)
.....+.++.+.+.|..+.-+|+|.|.++. +.+.+ .+.++.+.+.| +.+..+|+..
T Consensus 168 ~~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g--~~l~~iDiGG 232 (409)
T cd06830 168 ASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLG--ANLRYLDIGG 232 (409)
T ss_pred HHHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhC--CCCcEEEcCC
Confidence 345666777777777668899999999874 43333 33344444445 3466666654
No 179
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=29.29 E-value=1.5e+02 Score=29.12 Aligned_cols=41 Identities=12% Similarity=0.317 Sum_probs=29.1
Q ss_pred HHhhC-CCceEEeec-CCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC
Q 036715 164 AHQSD-PLATLFMNE-YNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV 219 (362)
Q Consensus 164 Ar~ad-P~a~L~~Nd-y~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~ 219 (362)
.+++. |+++++... .+ .+.|+.+.+.|+|||+.|+-.++..
T Consensus 273 Ld~~g~~~vkI~aSgGin---------------e~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 273 LDENGGKHVKIIVSSGFD---------------AKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred HhhCCCCCcEEEEeCCCC---------------HHHHHHHHHcCCCccEEecCccccc
Confidence 33444 999987753 22 1235677889999999999988855
No 180
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=28.86 E-value=1e+02 Score=29.66 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=50.3
Q ss_pred HHHHHHHhcCcEEEEEEeecCCCCCCCccccCCC--hHHHHHHHHHHHHHHHHHccCceeEEEEecccccccc-cccccC
Q 036715 77 QMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLT--GFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFDF-YEQRLG 153 (362)
Q Consensus 77 ~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~--~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~~-~~~~lG 153 (362)
..++.|-+||++|.| |++..- .....|+..+- .++-...+.+.+-+++..| .++.|-|.-|...... -...+
T Consensus 46 ~widaAHrnGV~vLG-Tiife~-~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~y--GFDGw~iN~E~~~~~~~~~~~l- 120 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLG-TIIFEW-GGGAEWCEELLEKDEDGSFPYADKLIEIAKYY--GFDGWLINIETPLSGPEDAENL- 120 (311)
T ss_dssp HHHHHHHHTT--EEE-EEEEEE-E--HHHHHHHT---TTS--HHHHHHHHHHHHH--T--EEEEEEEESSTTGGGHHHH-
T ss_pred hhHHHHHhcCceEEE-EEEecC-CchHHHHHHHHcCCcccccHHHHHHHHHHHHc--CCCceEEEecccCCchhHHHHH-
Confidence 468999999999999 555521 12235554432 2222344556667788888 3888988666532210 00111
Q ss_pred hHHHHHHHHHHHhhCCCceEEee
Q 036715 154 PKAALHFFQTAHQSDPLATLFMN 176 (362)
Q Consensus 154 ~~~~~~af~~Ar~adP~a~L~~N 176 (362)
.++++..-+.+++ .|..+|.-=
T Consensus 121 ~~F~~~l~~~~~~-~~~~~v~WY 142 (311)
T PF03644_consen 121 IDFLKYLRKEAHE-NPGSEVIWY 142 (311)
T ss_dssp HHHHHHHHHHHHH-T-T-EEEEE
T ss_pred HHHHHHHHHHhhc-CCCcEEEEe
Confidence 2567778888888 888777543
No 181
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=28.46 E-value=5e+02 Score=24.34 Aligned_cols=89 Identities=10% Similarity=0.134 Sum_probs=51.3
Q ss_pred CCCcccchhHHHHHHHHHhcCcE---EEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEEEeccc
Q 036715 66 EQGKVNYTVADQMMEFVRANKLI---VRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEI 142 (362)
Q Consensus 66 ~~G~~~~~~~D~~v~~a~~~gi~---v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~ 142 (362)
..|+.|++...++++++.++|+. +.|++ . - .+..+ .+.-.+.++.++..-+|++.- +=
T Consensus 14 ~dg~iD~~~l~~l~~~l~~~Gv~gi~v~Gst----G---E-~~~Ls------~eEr~~l~~~~~~~~~~~~pv---i~-- 74 (289)
T cd00951 14 ADGSFDEDAYRAHVEWLLSYGAAALFAAGGT----G---E-FFSLT------PDEYAQVVRAAVEETAGRVPV---LA-- 74 (289)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECcCC----c---C-cccCC------HHHHHHHHHHHHHHhCCCCCE---EE--
Confidence 45788888888999998888763 22322 1 0 11111 466677788888887776642 20
Q ss_pred ccccccccccChHHHHHHHHHHHhhCCCceEEeecCC
Q 036715 143 LHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179 (362)
Q Consensus 143 ~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~ 179 (362)
+-. . +-+-..+..+.|+++.-++.+++.-|-
T Consensus 75 -gv~----~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 75 -GAG----Y-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred -ecC----C-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 100 1 122223345566666777777776553
No 182
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=28.29 E-value=6.9e+02 Score=25.92 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCcEEEEEEeecCCCCCCCcc---ccCCChHHHHHHHHHHHHHHHHHccCceeEEEEeccccccccccc-
Q 036715 75 ADQMMEFVRANKLIVRGHNIFWENPKYNPTW---VRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFDFYEQ- 150 (362)
Q Consensus 75 ~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W---~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~~~~~- 150 (362)
-|+.++.+.+.|.+.. |..+=- .+-. ....+.++.++.+.+-|+...++ +.+|. + .-| ++|..
T Consensus 83 ~d~~~ea~~~~~~~~v-~i~~~~----Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~-g~~V~-~--~~e----~f~D~~ 149 (526)
T TIGR00977 83 EDKMLQALIKAETPVV-TIFGKS----WDLHVLEALQTTLEENLAMIYDTVAYLKRQ-GDEVI-Y--DAE----HFFDGY 149 (526)
T ss_pred hHHHHHHHhcCCCCEE-EEEeCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCeEE-E--Eee----eeeecc
Confidence 3667777887877643 332110 1111 12346666666666666554443 22331 1 112 12211
Q ss_pred ccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCC
Q 036715 151 RLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFT 218 (362)
Q Consensus 151 ~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~ 218 (362)
...++|+...++.|.++-++.. .+-|-.-. ..|..+.++++.++++ ++..-||+|+|-.
T Consensus 150 r~~~~~l~~~~~~a~~aGad~i-~i~DTvG~-------~~P~~v~~li~~l~~~-~~~~~i~vH~HND 208 (526)
T TIGR00977 150 KANPEYALATLATAQQAGADWL-VLCDTNGG-------TLPHEISEITTKVKRS-LKQPQLGIHAHND 208 (526)
T ss_pred cCCHHHHHHHHHHHHhCCCCeE-EEecCCCC-------cCHHHHHHHHHHHHHh-CCCCEEEEEECCC
Confidence 3457999999999988766654 44443221 1357777888888764 3444589999954
No 183
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=28.00 E-value=1.6e+02 Score=28.58 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCcEEE-----EEEee----------------cCCCCCCCccccCCChHHHHHHHHHHHHHHHHHcc-Cc
Q 036715 75 ADQMMEFVRANKLIVR-----GHNIF----------------WENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYK-EE 132 (362)
Q Consensus 75 ~D~~v~~a~~~gi~v~-----GH~L~----------------W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~-g~ 132 (362)
..++++..++-||..- ||+.- |.. -..|.|+.. +.+-..+.-..|+++..+.|+ ..
T Consensus 97 q~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~-f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG~~~ 174 (333)
T PF05089_consen 97 QKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNG-FCRPYFLDP-TDPLFAEIAKLFYEEQIKLYGTDH 174 (333)
T ss_dssp HHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETT-EE--EEE-S-S--HHHHHHHHHHHHHHHHH---S
T ss_pred HHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCC-CCCCceeCC-CCchHHHHHHHHHHHHHHhcCCCc
Confidence 4578889999998753 66531 110 011233322 223345555678888888887 35
Q ss_pred eeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeec
Q 036715 133 FIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNE 177 (362)
Q Consensus 133 v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Nd 177 (362)
+..-|--||....+. .+..=.+..+..++..+++||+|.-++=.
T Consensus 175 ~Y~~D~FnE~~p~~~-~~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 175 IYAADPFNEGGPPSG-DPEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp EEE--TTTTS---TT-S---HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred eeCCCccCCCCCCCC-chHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 778899999753221 11001234456788889999998877655
No 184
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=27.67 E-value=5.5e+02 Score=25.10 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=35.0
Q ss_pred ccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC
Q 036715 151 RLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV 219 (362)
Q Consensus 151 ~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~ 219 (362)
...++++....+.+.++-.+ .+.+-|-.-+- .+....++++.|++. .+..-|++|+|-..
T Consensus 193 r~~~~~l~~~~~~~~~~Gad-~I~l~DT~G~a-------~P~~v~~lv~~l~~~-~~~~~i~~H~Hnd~ 252 (347)
T PLN02746 193 PVPPSKVAYVAKELYDMGCY-EISLGDTIGVG-------TPGTVVPMLEAVMAV-VPVDKLAVHFHDTY 252 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCC-EEEecCCcCCc-------CHHHHHHHHHHHHHh-CCCCeEEEEECCCC
Confidence 34567777777777776544 56666533221 245566666666654 34345788777543
No 185
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=27.53 E-value=61 Score=27.22 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=17.8
Q ss_pred EEecC-CCCcCCCCeEEEEecc
Q 036715 2 HVTNG-HGDILQGAVIKIKQVS 22 (362)
Q Consensus 2 ~v~d~-~g~p~~~a~v~v~~~~ 22 (362)
.|+|. .|+|.+|+.|++....
T Consensus 32 HVLDt~~G~PA~gV~V~L~~~~ 53 (137)
T PRK15036 32 HILNQQTGKPAADVTVTLEKKA 53 (137)
T ss_pred EEEeCCCCcCCCCCEEEEEEcc
Confidence 47776 8999999999998764
No 186
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=27.50 E-value=6.5e+02 Score=25.36 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=58.3
Q ss_pred HHHHhhCCCceEEee---cCCCccCC-Ccc-chhHHHHHHHHHHHHHcCCcccEEEeeccCCC--CC-------HHHHHH
Q 036715 162 QTAHQSDPLATLFMN---EYNVVETC-SDV-NSMVDSYISRLRELRRSGVSTDGIGLQGHFTV--PN-------LPLMRA 227 (362)
Q Consensus 162 ~~Ar~adP~a~L~~N---dy~~~~~~-~~~-~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~--p~-------~~~~~~ 227 (362)
..+++..|+++|++- |++.-..+ +.+ ....++...+++..++.| +..+|+..|.++ .+ +...|.
T Consensus 158 ~kv~~~hP~a~llLrIatdds~a~~~l~~KFG~~~~~~~~lLd~ak~l~--lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~ 235 (448)
T KOG0622|consen 158 EKVAKSHPNANLLLRIATDDSTATCRLNLKFGCSLDNCRHLLDMAKELE--LNVVGVSFHVGSGCTDLQAYRDAISDARN 235 (448)
T ss_pred HHHHHhCCCceEEEEEccCCCcccccccCccCCCHHHHHHHHHHHHHcC--ceEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 346778999999885 33321110 111 111233333344333444 677888889876 33 335566
Q ss_pred HHHHHHhCCCcEEEeeeecCCC--CC------hHHHHHHHHHHHHHHhcC
Q 036715 228 IIDKMTTLKLPIWLTEVDISSK--LS------KEKQAVYLEQVLREGFSH 269 (362)
Q Consensus 228 ~L~~~a~~glpI~iTE~dv~~~--~~------~~~QA~~~~~~~~~~~s~ 269 (362)
..|.-+++|.++.+ +|+... .+ -+.-++.+..++...|..
T Consensus 236 vfd~g~e~Gf~m~~--LdiGGGf~g~~~~~~~fe~i~~~In~ald~~Fp~ 283 (448)
T KOG0622|consen 236 VFDMGAELGFEMDI--LDIGGGFPGDEGHAVVFEEIADVINTALDLYFPS 283 (448)
T ss_pred HHHHHHhcCceEEE--eecCCCCCCccchhhhhhhHHHHHHHHHHHhCCC
Confidence 67776788888555 455432 11 234567777777777754
No 187
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=27.31 E-value=45 Score=32.78 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=16.6
Q ss_pred EEecCCCCcCCCCeEEEE
Q 036715 2 HVTNGHGDILQGAVIKIK 19 (362)
Q Consensus 2 ~v~d~~g~p~~~a~v~v~ 19 (362)
+|+|++|+||++|+|.|.
T Consensus 303 ~V~d~~g~pl~~A~V~i~ 320 (374)
T cd03858 303 FVRDANGNPIANATISVE 320 (374)
T ss_pred EEECCCCCccCCeEEEEe
Confidence 589999999999999995
No 188
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=27.23 E-value=2.9e+02 Score=26.47 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhCC----CceEEeecCCCccCCCc--cchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHH
Q 036715 155 KAALHFFQTAHQSDP----LATLFMNEYNVVETCSD--VNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAI 228 (362)
Q Consensus 155 ~~~~~af~~Ar~adP----~a~L~~Ndy~~~~~~~~--~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~ 228 (362)
.-++.|+.++++..- ...++++..- +..+. ....+.+++..+ ... .+|.+|+.++++. ..|+..
T Consensus 169 l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti--~~sG~tl~Gq~~~a~~~~l---~~~--~~~~vGlNCa~Gp---~~m~~~ 238 (311)
T COG0646 169 LNAKAAVFAAREVFEELGVRLPVMISGTI--TDSGRTLSGQTIEAFLNSL---EHL--GPDAVGLNCALGP---DEMRPH 238 (311)
T ss_pred HHHHHHHHHHHHHHHhcCCcccEEEEEEE--ecCceecCCCcHHHHHHHh---hcc--CCcEEeeccccCH---HHHHHH
Confidence 446778888887653 3455555321 11111 011345565443 333 4899999999865 456666
Q ss_pred HHHHHh-----------CCCcEEEee-eecCCCCChHHHHHHHHHHHHH
Q 036715 229 IDKMTT-----------LKLPIWLTE-VDISSKLSKEKQAVYLEQVLRE 265 (362)
Q Consensus 229 L~~~a~-----------~glpI~iTE-~dv~~~~~~~~QA~~~~~~~~~ 265 (362)
|+.++. .|||...-| +-++. +++.-|+.++.+.+.
T Consensus 239 l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~--~p~~~a~~~~~f~~~ 285 (311)
T COG0646 239 LRELSRIADAFVSVYPNAGLPNAFGERAVYDL--TPEYMAEALAEFAEE 285 (311)
T ss_pred HHHHHhccCceEEEeCCCCCCcccCCccccCC--CHHHHHHHHHHHHHh
Confidence 666643 378877665 22222 244556666555543
No 189
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=27.19 E-value=1.2e+02 Score=29.38 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccC-CC-------C-CHHHHHHHHHHHHhCCCcEEEee
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHF-TV-------P-NLPLMRAIIDKMTTLKLPIWLTE 243 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~-~~-------p-~~~~~~~~L~~~a~~glpI~iTE 243 (362)
.+..++.++.++++|+|+|+|-+.... .. + .-++..++++.|.+.|+.+.+.+
T Consensus 23 ~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 23 QEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 356778888889999999999877642 11 0 12344566677767787766554
No 190
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.38 E-value=5.3e+02 Score=24.00 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=33.2
Q ss_pred CCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCcee
Q 036715 66 EQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFI 134 (362)
Q Consensus 66 ~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~ 134 (362)
..|+.|++...+.++++.+.|+. |-. +.++ +=... .+ -.+.-.+-++.++++.+|++.
T Consensus 12 ~~g~iD~~~~~~~i~~l~~~Gv~--Gi~-~~Gs---tGE~~-~L----s~~Er~~~~~~~~~~~~~~~~ 69 (285)
T TIGR00674 12 EDGSVDFAALEKLIDFQIENGTD--AIV-VVGT---TGESP-TL----SHEEHKKVIEFVVDLVNGRVP 69 (285)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCC--EEE-ECcc---Ccccc-cC----CHHHHHHHHHHHHHHhCCCCe
Confidence 35788888888888888887752 211 1221 11111 11 135556667777777777653
No 191
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=26.26 E-value=4.1e+02 Score=23.93 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHcc-CceeEEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHH
Q 036715 115 QSAVNSRIQSLMNKYK-EEFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDS 193 (362)
Q Consensus 115 ~~~~~~~i~~vv~ry~-g~v~~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~ 193 (362)
+.....||++...... +.|.+||+.+||+- .+..+.+..+++..-..+ ...+ + .....
T Consensus 19 ~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP------~ld~~~~~a~~~~~~~~~----------t~~~----~-~~~~~ 77 (202)
T COG1182 19 RKLADEFIETYKEKHPNDEVIERDLAAEPIP------HLDEELLAAWFKPQAGEG----------TAEE----K-EALAR 77 (202)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeecccCCCc------ccCHHHHhcccCCccCCC----------CHHH----H-HHHHH
Confidence 4445566666655554 48999999999973 333334333332211110 0000 0 01122
Q ss_pred HHHHHHHHHHcCCcccEEEeeccCCC-CCHHHHHHHHHHHHhCCCcEEEeeeecC
Q 036715 194 YISRLRELRRSGVSTDGIGLQGHFTV-PNLPLMRAIIDKMTTLKLPIWLTEVDIS 247 (362)
Q Consensus 194 y~~~i~~l~~~G~~iDgIG~q~H~~~-p~~~~~~~~L~~~a~~glpI~iTE~dv~ 247 (362)
.-+++++|+++. .+=+-.-+.+ .-++.+.+-+|.++..|+-...||-+..
T Consensus 78 sd~l~~ef~aAD----~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~ 128 (202)
T COG1182 78 SDKLLEEFLAAD----KVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPV 128 (202)
T ss_pred HHHHHHHHHhcC----eEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcc
Confidence 233456677653 3323223322 2356899999999999999999998765
No 192
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=25.90 E-value=5.9e+02 Score=24.81 Aligned_cols=104 Identities=20% Similarity=0.222 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC------C----CH
Q 036715 153 GPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV------P----NL 222 (362)
Q Consensus 153 G~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~------p----~~ 222 (362)
.++ ++..|+.+|+..|+..++.|=+.....+. ..+.+.+.++.+ ++ |++- -|++. | +.
T Consensus 104 ~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~----~~~~~~~~~~~~---~a--dal~--l~l~~~qe~~~p~g~~~f 171 (352)
T PRK05437 104 DPE-LADSFSVVRKVAPDGLLFANLGAVQLYGY----GVEEAQRAVEMI---EA--DALQ--IHLNPLQELVQPEGDRDF 171 (352)
T ss_pred Chh-hHHHHHHHHHHCCCceEEeecCccccCCC----CHHHHHHHHHhc---CC--CcEE--EeCccchhhcCCCCcccH
Confidence 356 78999999999999999998544311111 123444433333 22 3333 34422 1 22
Q ss_pred HHHHHHHHHHHh-CCCcEEEeeeecCCCCChHHHHHHHHHHHHHHhcCCCeeEEEEEe
Q 036715 223 PLMRAIIDKMTT-LKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWA 279 (362)
Q Consensus 223 ~~~~~~L~~~a~-~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg 279 (362)
..+.+.|+.+.+ .++||.+-|.+... + ..-|..+. .-+|++|..=|
T Consensus 172 ~~~le~i~~i~~~~~vPVivK~~g~g~--s-~~~a~~l~--------~~Gvd~I~Vsg 218 (352)
T PRK05437 172 RGWLDNIAEIVSALPVPVIVKEVGFGI--S-KETAKRLA--------DAGVKAIDVAG 218 (352)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCC--c-HHHHHHHH--------HcCCCEEEECC
Confidence 334466666643 49999999986432 1 11222221 13788888755
No 193
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=25.82 E-value=1e+02 Score=22.99 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=14.6
Q ss_pred eeeeCCCcEEEEeeEE
Q 036715 318 TGHTDAHGSYSFYGFL 333 (362)
Q Consensus 318 ~~~td~~G~~~~~gf~ 333 (362)
+..||.+|.|++.|..
T Consensus 32 ~~~Td~~G~F~l~G~~ 47 (80)
T PF01060_consen 32 ETKTDSDGNFELSGST 47 (80)
T ss_pred EEEECCCceEEEEEEc
Confidence 5789999999999986
No 194
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=25.62 E-value=1.1e+02 Score=29.67 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=22.9
Q ss_pred CCcccchhHHHHHHHHHhcCcEEE------EEEeec
Q 036715 67 QGKVNYTVADQMMEFVRANKLIVR------GHNIFW 96 (362)
Q Consensus 67 ~G~~~~~~~D~~v~~a~~~gi~v~------GH~L~W 96 (362)
.|.|.-+...+++++|+++||.|. ||...|
T Consensus 69 ~~~YT~~di~elv~yA~~rgI~vIPEiD~PGH~~a~ 104 (329)
T cd06568 69 GGYYTQEDYKDIVAYAAERHITVVPEIDMPGHTNAA 104 (329)
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEecCCcHHHHHH
Confidence 455666677899999999999876 665543
No 195
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.51 E-value=5.5e+02 Score=23.81 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=33.6
Q ss_pred CCCcccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCcee
Q 036715 66 EQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFI 134 (362)
Q Consensus 66 ~~G~~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~ 134 (362)
+.|..|++...+.++++.+.|+.-. . +-++- -=.+..+ .+...+.++.++++.+|++.
T Consensus 14 ~dg~iD~~~~~~~i~~l~~~Gv~gl--~-v~Gst--GE~~~lt------~~Er~~l~~~~~~~~~~~~~ 71 (284)
T cd00950 14 DDGSVDFDALERLIEFQIENGTDGL--V-VCGTT--GESPTLS------DEEHEAVIEAVVEAVNGRVP 71 (284)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEE--E-ECCCC--cchhhCC------HHHHHHHHHHHHHHhCCCCc
Confidence 3577888888888888888776321 1 11110 0011111 45666777777777777653
No 196
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=25.30 E-value=5.7e+02 Score=23.95 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=47.8
Q ss_pred CCCcccchhHHHHHHHHHh-cCcE---EEEEEeecCCCCCCCccccCCChHHHHHHHHHHHHHHHHHccCceeEEEEecc
Q 036715 66 EQGKVNYTVADQMMEFVRA-NKLI---VRGHNIFWENPKYNPTWVRNLTGFQLQSAVNSRIQSLMNKYKEEFIHWDVSNE 141 (362)
Q Consensus 66 ~~G~~~~~~~D~~v~~a~~-~gi~---v~GH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE 141 (362)
..|+.|++...++++++.+ .|+. +.|++ =. ...++ .+.-.+.++.+++.-+|++. |+
T Consensus 17 ~dg~iD~~~~~~li~~l~~~~Gv~gi~v~Gst---------GE-~~~Ls----~eEr~~~~~~~~~~~~~~~~---vi-- 77 (293)
T PRK04147 17 EDGQIDEQGLRRLVRFNIEKQGIDGLYVGGST---------GE-AFLLS----TEEKKQVLEIVAEEAKGKVK---LI-- 77 (293)
T ss_pred CCCCcCHHHHHHHHHHHHhcCCCCEEEECCCc---------cc-cccCC----HHHHHHHHHHHHHHhCCCCC---EE--
Confidence 3577888888888888888 6653 33332 11 11121 35566677777777777653 11
Q ss_pred cccccccccccChHHHHHHHHHHHhhCCCceEEeecCC
Q 036715 142 ILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYN 179 (362)
Q Consensus 142 ~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~ 179 (362)
. +. ....-+-.....+.|+++.-++.+++.-|-
T Consensus 78 --a-gv--g~~~t~~ai~~a~~a~~~Gad~v~v~~P~y 110 (293)
T PRK04147 78 --A-QV--GSVNTAEAQELAKYATELGYDAISAVTPFY 110 (293)
T ss_pred --e-cC--CCCCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 0 00 001112223334455556666777766543
No 197
>PRK00110 hypothetical protein; Validated
Probab=25.09 E-value=2.9e+02 Score=25.61 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEeeeecCCCCC---hHHHHHHHHHHHHHHhcCCCeeEEE
Q 036715 221 NLPLMRAIIDKMTTLKLPIWLTEVDISSKLS---KEKQAVYLEQVLREGFSHPSVSGIM 276 (362)
Q Consensus 221 ~~~~~~~~L~~~a~~glpI~iTE~dv~~~~~---~~~QA~~~~~~~~~~~s~p~v~gi~ 276 (362)
++..+...-+.|...|+++.-+|+.+..... .+.+++-+.+++..+-.|+.|..|.
T Consensus 174 ~p~~~~~v~~~L~~~g~~~~~sei~~~P~~~v~l~~e~~~~~~~li~~Led~dDVq~Vy 232 (245)
T PRK00110 174 APEDFEAVRDALEAAGLEAESAEVTMIPQNTVELDEETAEKLLKLIDALEDLDDVQNVY 232 (245)
T ss_pred CHHHHHHHHHHHHHcCCCeeeeEEEEecCCCcccCHHHHHHHHHHHHHHhcCCCcceEe
Confidence 3455555566666789999999988865311 3467788899999999999999874
No 198
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=25.03 E-value=2.6e+02 Score=25.79 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEeeeecCCCCC---hHHHHHHHHHHHHHHhcCCCeeEEE
Q 036715 222 LPLMRAIIDKMTTLKLPIWLTEVDISSKLS---KEKQAVYLEQVLREGFSHPSVSGIM 276 (362)
Q Consensus 222 ~~~~~~~L~~~a~~glpI~iTE~dv~~~~~---~~~QA~~~~~~~~~~~s~p~v~gi~ 276 (362)
+..+.+.-+.|...|++|.-+|+.+..... .+.|++-+.+++..+-.++.|..|.
T Consensus 177 ~~~~~~v~~~L~~~g~~i~~sei~~~P~~~v~l~~e~~~~~~~li~~Lee~dDVq~Vy 234 (238)
T TIGR01033 177 PEELEKVKEALEAKGFPIESAEITMIPLTTVDLDDEQAEKLLKLIDALEDDDDVQEVY 234 (238)
T ss_pred HHHHHHHHHHHHHcCCCceeeEEEEecCCCcccCHHHHHHHHHHHHHHhcCCCcceee
Confidence 344444445555789999999988865311 3567888999999999999998864
No 199
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=24.80 E-value=6.6e+02 Score=24.51 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=37.6
Q ss_pred cChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHc-CCcccEEEeeccCC
Q 036715 152 LGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRS-GVSTDGIGLQGHFT 218 (362)
Q Consensus 152 lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~-G~~iDgIG~q~H~~ 218 (362)
..++|+...++.+.++.++ .+.+-|-.-. ..+..+.++++.++++ +++ ||+|+|-.
T Consensus 139 ~~~~~l~~~~~~~~~~Ga~-~i~l~DT~G~-------~~P~~v~~lv~~l~~~~~v~---l~~H~HNd 195 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGAD-RFRFADTVGI-------LDPFSTYELVRALRQAVDLP---LEMHAHND 195 (365)
T ss_pred CCHHHHHHHHHHHHHcCcC-EEEEcccCCC-------CCHHHHHHHHHHHHHhcCCe---EEEEecCC
Confidence 3468999999999988766 4556553322 1356677777777664 333 78999954
No 200
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=24.75 E-value=4.7e+02 Score=24.48 Aligned_cols=24 Identities=0% Similarity=0.140 Sum_probs=13.7
Q ss_pred cChHHHHHHHHHHHhhCCCceEEe
Q 036715 152 LGPKAALHFFQTAHQSDPLATLFM 175 (362)
Q Consensus 152 lG~~~~~~af~~Ar~adP~a~L~~ 175 (362)
+.++-+.+.|+.+-++-|+..+++
T Consensus 110 ~~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 110 FSFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEE
Confidence 445566666766666665444444
No 201
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=24.63 E-value=4.4e+02 Score=25.39 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHH-cCCcccEEEeeccCCC
Q 036715 191 VDSYISRLRELRR-SGVSTDGIGLQGHFTV 219 (362)
Q Consensus 191 ~~~y~~~i~~l~~-~G~~iDgIG~q~H~~~ 219 (362)
.....++++.+.+ .| ++-+|+|.|+++
T Consensus 151 ~~e~~~~~~~~~~~~~--l~l~Gi~~H~gs 178 (373)
T cd06828 151 LEQALEAYRRAKELPG--LKLVGLHCHIGS 178 (373)
T ss_pred HHHHHHHHHHHHhCCC--CcEEEEEEecCC
Confidence 3455666666555 34 677899999875
No 202
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=24.51 E-value=1.3e+02 Score=29.25 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=40.2
Q ss_pred CCcccchhHHHHHHHHHhcCcEEE------EEEeecCCCCCCCc--------cc----------cCCChHHHHHHHHHHH
Q 036715 67 QGKVNYTVADQMMEFVRANKLIVR------GHNIFWENPKYNPT--------WV----------RNLTGFQLQSAVNSRI 122 (362)
Q Consensus 67 ~G~~~~~~~D~~v~~a~~~gi~v~------GH~L~W~~~~~~P~--------W~----------~~~~~~~~~~~~~~~i 122 (362)
.|.|.-+....++++|+++||.|. ||...|... .|. |- ...+.++..+.+++-+
T Consensus 64 ~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~--~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl 141 (348)
T cd06562 64 SEVYTPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQG--YPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLF 141 (348)
T ss_pred CceECHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHh--ChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHH
Confidence 345666677899999999999875 888776421 121 11 0112345566666677
Q ss_pred HHHHHHccCc
Q 036715 123 QSLMNKYKEE 132 (362)
Q Consensus 123 ~~vv~ry~g~ 132 (362)
+++++-|.++
T Consensus 142 ~E~~~lF~~~ 151 (348)
T cd06562 142 KEVSELFPDK 151 (348)
T ss_pred HHHHHhcCCc
Confidence 7777766543
No 203
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=24.42 E-value=4.4e+02 Score=22.33 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCcccEEEeeccCCC-CC--HHHHHHHHHHHHh---CCCcEEEeeeecCCCCChHHHHHHHHHHHHH
Q 036715 192 DSYISRLRELRRSGVSTDGIGLQGHFTV-PN--LPLMRAIIDKMTT---LKLPIWLTEVDISSKLSKEKQAVYLEQVLRE 265 (362)
Q Consensus 192 ~~y~~~i~~l~~~G~~iDgIG~q~H~~~-p~--~~~~~~~L~~~a~---~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~ 265 (362)
...++.++...+.| .|+|-+...+.. ++ .+.+.+.+....+ .++|+.+.-.-..+ .+. +.+..+.+.
T Consensus 65 ~~~~~~a~~a~~~G--ad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~----~~~~~~~~~ 137 (201)
T cd00945 65 EVKVAEVEEAIDLG--ADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTA----DEIAKAARI 137 (201)
T ss_pred HHHHHHHHHHHHcC--CCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCH----HHHHHHHHH
Confidence 45566677777877 578777644432 33 4555555555543 48998887653332 112 223333343
Q ss_pred HhcCCCeeEEE
Q 036715 266 GFSHPSVSGIM 276 (362)
Q Consensus 266 ~~s~p~v~gi~ 276 (362)
+ .++++.+|-
T Consensus 138 ~-~~~g~~~iK 147 (201)
T cd00945 138 A-AEAGADFIK 147 (201)
T ss_pred H-HHhCCCEEE
Confidence 3 357888875
No 204
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=24.40 E-value=88 Score=25.30 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=18.4
Q ss_pred EEec-CCCCcCCCCeEEEEeccC
Q 036715 2 HVTN-GHGDILQGAVIKIKQVSK 23 (362)
Q Consensus 2 ~v~d-~~g~p~~~a~v~v~~~~~ 23 (362)
.|+| +.|+|.+|+.|++.....
T Consensus 6 HVLDt~~G~PAagv~V~L~~~~~ 28 (112)
T TIGR02962 6 HVLDTTSGKPAAGVPVTLYRLDG 28 (112)
T ss_pred EEEeCCCCccCCCCEEEEEEecC
Confidence 5778 789999999999987643
No 205
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.17 E-value=1.7e+02 Score=28.05 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccC-C---------C----C-CHHHHHHHHHHHHhCCCcEEEee
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHF-T---------V----P-NLPLMRAIIDKMTTLKLPIWLTE 243 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~-~---------~----p-~~~~~~~~L~~~a~~glpI~iTE 243 (362)
....++.++.++++|+|+|+|-+.... . . + .-++..++++.|.+.|+.+.+..
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v 90 (317)
T cd06598 23 WQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVIT 90 (317)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEE
Confidence 356778888999999999999776432 1 1 0 12345567777777888766654
No 206
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=24.08 E-value=51 Score=29.24 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=18.9
Q ss_pred CEEecC-CCCcCCCCeEEEEeccC
Q 036715 1 MHVTNG-HGDILQGAVIKIKQVSK 23 (362)
Q Consensus 1 i~v~d~-~g~p~~~a~v~v~~~~~ 23 (362)
++|+|. .++||+||.|.|=|...
T Consensus 31 g~V~D~~~c~Pv~~a~VdiWh~da 54 (188)
T cd03457 31 LQVVDVATCCPPPNAAVDIWHCDA 54 (188)
T ss_pred EEEEeCCCCccCCCeEEEEecCCC
Confidence 478996 58999999999977654
No 207
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=23.99 E-value=1.3e+02 Score=28.64 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=36.7
Q ss_pred hhHHHHHHhcCCeeeeCCCccccccccCCCcccchhHHHHHHHHHhcCc-EEEEEE
Q 036715 39 LPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKL-IVRGHN 93 (362)
Q Consensus 39 ~~y~~~~~~~Fn~~t~en~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi-~v~GH~ 93 (362)
..|++++.+.||.++..-.+.. |+.+.-+.+-+.++.|.++|- .+.|--
T Consensus 82 ~~y~rlL~aGiNVv~~g~~l~y------Pw~~~PelaeKpl~lAaraGn~Tl~gtG 131 (350)
T COG3804 82 DEYARLLRAGINVVTPGPVLQY------PWFYPPELAEKPLELAARAGNATLHGTG 131 (350)
T ss_pred HHHHHHHHcCCceeccCccccC------CCcCChHHhhchHHHHHhcCCceEEecc
Confidence 3899999999999998644433 333444567788999999998 777743
No 208
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=23.86 E-value=3.9e+02 Score=25.45 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHH---cCCcccEEEeeccCCC-----CCHH-HHHHHHHHHHhCCCcEEEeeeecCCC
Q 036715 191 VDSYISRLRELRR---SGVSTDGIGLQGHFTV-----PNLP-LMRAIIDKMTTLKLPIWLTEVDISSK 249 (362)
Q Consensus 191 ~~~y~~~i~~l~~---~G~~iDgIG~q~H~~~-----p~~~-~~~~~L~~~a~~glpI~iTE~dv~~~ 249 (362)
.+.|..+..++++ +..|+|||=+-.|=.. ++.+ ++.+.+..+...++||-+| +|...+
T Consensus 77 ~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG~Ll~rvR~~vGp~vpI~~t-lDlHaN 143 (292)
T PF07364_consen 77 REAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEGDLLRRVRAIVGPDVPIAAT-LDLHAN 143 (292)
T ss_dssp HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHHHHHHHHHHHHTTTSEEEEE-E-TT--
T ss_pred HHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchHHHHHHHHHHhCCCCeEEEE-eCCCCC
Confidence 4556555444433 3459999999999532 4554 5777777777788999877 888864
No 209
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=23.75 E-value=4.8e+02 Score=22.52 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCCceEEeecCCCcc-CCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC
Q 036715 157 ALHFFQTAHQSDPLATLFMNEYNVVE-TCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV 219 (362)
Q Consensus 157 ~~~af~~Ar~adP~a~L~~Ndy~~~~-~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~ 219 (362)
+...-+.+++..+..++.+- .++ . ......-..+...+.++.+.+.+ .+.-.|++.|++.
T Consensus 93 l~~l~~~~~~~~~~~~v~lr-v~~-g~~~~R~G~~~~e~~~~~~~i~~~~-~l~l~Gl~~H~~~ 153 (211)
T cd06808 93 LEKLEEAALKAGPPARVLLR-IDT-GDENGKFGVRPEELKALLERAKELP-HLRLVGLHTHFGS 153 (211)
T ss_pred HHHHHHHHHHhCCCceEEEE-EcC-CCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEEEecCC
Confidence 34444555666666666553 111 0 00000012345556666665543 3677788899865
No 210
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=23.61 E-value=1.4e+02 Score=28.69 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCC--------C-CHHHHHHHHHHHHhCCCcEEEee
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTV--------P-NLPLMRAIIDKMTTLKLPIWLTE 243 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~--------p-~~~~~~~~L~~~a~~glpI~iTE 243 (362)
.+...+.++.+.++++|+|.|-+..+... + .-++..++++.+.+.|+.+.+..
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 23 QDKVVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 35667888899999999999988864321 0 12345567777777787765543
No 211
>PRK08508 biotin synthase; Provisional
Probab=23.38 E-value=4.5e+02 Score=24.53 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeec---cCC---C-CCHHHHH
Q 036715 154 PKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQG---HFT---V-PNLPLMR 226 (362)
Q Consensus 154 ~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~---H~~---~-p~~~~~~ 226 (362)
-+|+.+.++.+|+..|+..+..+ .+.+. .+.++.|+++|+.--.+++.. ++. . -+..+..
T Consensus 74 ~e~~~ei~~~ik~~~p~l~i~~s-~G~~~------------~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l 140 (279)
T PRK08508 74 LEYVAEAAKAVKKEVPGLHLIAC-NGTAS------------VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERF 140 (279)
T ss_pred HHHHHHHHHHHHhhCCCcEEEec-CCCCC------------HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHH
Confidence 47888999999988898776433 11110 234567788875222222222 110 1 1345555
Q ss_pred HHHHHHHhCCCcEEE
Q 036715 227 AIIDKMTTLKLPIWL 241 (362)
Q Consensus 227 ~~L~~~a~~glpI~i 241 (362)
+.++...+.|+++.-
T Consensus 141 ~~i~~a~~~Gi~v~s 155 (279)
T PRK08508 141 QTCENAKEAGLGLCS 155 (279)
T ss_pred HHHHHHHHcCCeecc
Confidence 666667777865543
No 212
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=23.21 E-value=1.9e+02 Score=26.83 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCC--------C---CHHHHHHHHHHHHhCCCcEEEeeeecCCCCChHHHHHHH
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTV--------P---NLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAVYL 259 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~--------p---~~~~~~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~ 259 (362)
.+...+.++.++++|+|+|+|-+...... . ..++.++.++.+.+.|+.+-+..- . .-++++
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~-------P-~v~~w~ 94 (265)
T cd06589 23 QDKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID-------P-YIREWW 94 (265)
T ss_pred HHHHHHHHHHHHHcCCCccEEEECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC-------h-hHHHHH
Confidence 35677888999999999999988765321 0 123466778888788887655421 1 115566
Q ss_pred HHHHHHHhcCCCeeE
Q 036715 260 EQVLREGFSHPSVSG 274 (362)
Q Consensus 260 ~~~~~~~~s~p~v~g 274 (362)
.+.++..+..-+|+|
T Consensus 95 ~~~~~~~~~~~Gvdg 109 (265)
T cd06589 95 AEVVKKLLVSLGVDG 109 (265)
T ss_pred HHHHHHhhccCCCCE
Confidence 655554433346666
No 213
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=23.02 E-value=7.3e+02 Score=24.56 Aligned_cols=93 Identities=9% Similarity=0.072 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCcEEEEEEeecCCCCCCCcccc-CC--ChHHHHHHHHHHHHHHH---HHccC-ceeEE--EEecccccc
Q 036715 75 ADQMMEFVRANKLIVRGHNIFWENPKYNPTWVR-NL--TGFQLQSAVNSRIQSLM---NKYKE-EFIHW--DVSNEILHF 145 (362)
Q Consensus 75 ~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~-~~--~~~~~~~~~~~~i~~vv---~ry~g-~v~~W--DV~NE~~~~ 145 (362)
..++.++++++||.+-+-+.-+.+ .|.+-. ++ +++++++..-+|+++.+ ...+. .|..| |=.|-|..
T Consensus 71 ~~~~~~~l~~~GL~v~~i~p~~f~---~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~~DG~~~~g~- 146 (378)
T TIGR02635 71 YEELARYAEELGLKIGAINPNLFQ---DDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLWLADGTNYPGQ- 146 (378)
T ss_pred HHHHHHHHHHcCCceeeeeCCccC---CcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcCcCCcc-
Confidence 578899999999999875543322 132211 23 34567777777766644 45554 34455 32222211
Q ss_pred cccccccC--hHHHHHHHHHHHhhC-CCceEEe
Q 036715 146 DFYEQRLG--PKAALHFFQTAHQSD-PLATLFM 175 (362)
Q Consensus 146 ~~~~~~lG--~~~~~~af~~Ar~ad-P~a~L~~ 175 (362)
.... .+++.++++.+-++. |+.++.+
T Consensus 147 ----~~~~~a~~rl~esL~eI~~~~~~~v~~~i 175 (378)
T TIGR02635 147 ----DDFRSRKDRLEESLAEVYEHLGADMRLLI 175 (378)
T ss_pred ----cCHHHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 1111 255666776555554 6888877
No 214
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=22.97 E-value=2.3e+02 Score=28.19 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=31.3
Q ss_pred ceeeeCCCcEEEEe---eEE-EEEEeCC-eeeEEEEEEecC-CCeeEEEEeC
Q 036715 317 VTGHTDAHGSYSFY---GFL-VSVKYGN-RTANSTFSLCRG-DETRHVTIRL 362 (362)
Q Consensus 317 ~~~~td~~G~~~~~---gf~-v~v~~~~-~~~~~~~~~~~~-~~~~~~~~~~ 362 (362)
...+||.+|.|... |-+ |+|+..| .+.+++++|... +.+..+.++|
T Consensus 344 ~~~~Td~~G~y~~~l~~G~y~l~vs~~Gy~~~~~~v~v~~~~~~~~~~d~~l 395 (395)
T cd03867 344 HDITTAEDGDYWRLLPPGIHIVSAQAPGYTKVMKRVTLPARMKRAGRVDFVL 395 (395)
T ss_pred cceEECCCceEEEecCCCcEEEEEEecCeeeEEEEEEeCCcCCCceEeeeEC
Confidence 45789999999632 212 8888887 567778888653 3445777665
No 215
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.67 E-value=1.8e+02 Score=28.21 Aligned_cols=51 Identities=12% Similarity=0.303 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeecc------------------------CCC---C---CHHHHHHHHHHHHhCCCcEE
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGH------------------------FTV---P---NLPLMRAIIDKMTTLKLPIW 240 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H------------------------~~~---p---~~~~~~~~L~~~a~~glpI~ 240 (362)
.+..++.++.++++|+|+|+|-++.. +.. + .-++..++++.|.+.|+.+-
T Consensus 23 ~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv~ 102 (340)
T cd06597 23 QAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKVL 102 (340)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEEE
Confidence 46678889999999999999988620 111 0 11356778888888888775
Q ss_pred E
Q 036715 241 L 241 (362)
Q Consensus 241 i 241 (362)
+
T Consensus 103 l 103 (340)
T cd06597 103 L 103 (340)
T ss_pred E
Confidence 4
No 216
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=22.59 E-value=2.5e+02 Score=27.52 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=28.8
Q ss_pred eeeeCCCcEEEEe---eEE-EEEEeCC-eeeEEE-EEEecCCCeeEEEEeC
Q 036715 318 TGHTDAHGSYSFY---GFL-VSVKYGN-RTANST-FSLCRGDETRHVTIRL 362 (362)
Q Consensus 318 ~~~td~~G~~~~~---gf~-v~v~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 362 (362)
..+||.+|.|... |-+ |+|+..| .+.+++ +.|..+..+ .+.+.|
T Consensus 323 ~~~td~~G~y~~~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~g~~~-~~~~~L 372 (372)
T cd03868 323 NVTTAKFGDYWRLLLPGTYTITAVAPGYEPSTVTDVVVKEGEAT-SVNFTL 372 (372)
T ss_pred ceEeCCCceEEecCCCEEEEEEEEecCCCceEEeeEEEcCCCeE-EEeeEC
Confidence 4689999999632 444 8999887 343443 457666554 666654
No 217
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=22.58 E-value=1.8e+02 Score=25.92 Aligned_cols=61 Identities=28% Similarity=0.301 Sum_probs=42.5
Q ss_pred ccChHHHHHHHHHHHhhC--CCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccC
Q 036715 151 RLGPKAALHFFQTAHQSD--PLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF 217 (362)
Q Consensus 151 ~lG~~~~~~af~~Ar~ad--P~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~ 217 (362)
.||.-.++..+.+..+.+ |...+++|+=-.+... ....++.++.|.++|+.|-..|.-..+
T Consensus 101 ~LG~~Lm~~f~~~L~e~~~~p~~Ifl~n~gV~l~~~------~~~~~e~Lk~L~~~Gv~I~~CGtCl~~ 163 (194)
T TIGR03527 101 ELGRILMKGFIYTLSELDPLPKRILFVNGGVKLTTE------GSEVLEDLKELEKKGVEILSCGTCLDF 163 (194)
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEEccceeeccC------CchHHHHHHHHHHCCCEEEEeHHHHHh
Confidence 466667888888888877 6788899973322211 134577789999999988887766543
No 218
>PRK09358 adenosine deaminase; Provisional
Probab=22.53 E-value=6.8e+02 Score=23.85 Aligned_cols=45 Identities=16% Similarity=0.072 Sum_probs=24.8
Q ss_pred HHHHHHH--cCCcccEEEeeccCCCCCHHHHHHHHHHHHhCCCcEEE
Q 036715 197 RLRELRR--SGVSTDGIGLQGHFTVPNLPLMRAIIDKMTTLKLPIWL 241 (362)
Q Consensus 197 ~i~~l~~--~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~~glpI~i 241 (362)
.++.++. .+..+-|+|+-+--...+++.+...++...+.|+|+.+
T Consensus 154 ~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~ 200 (340)
T PRK09358 154 ELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTA 200 (340)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEE
Confidence 3444443 34346666664221122446677777777778887655
No 219
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=21.97 E-value=2.1e+02 Score=28.12 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEE
Q 036715 157 ALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGI 211 (362)
Q Consensus 157 ~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgI 211 (362)
...+.+.|++..+++.|+-+|-= +...+.......+.+.++.|...|+||-.|
T Consensus 29 f~~~l~~a~~~~vD~vliAGDlF--d~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I 81 (390)
T COG0420 29 FDELLEIAKEEKVDFVLIAGDLF--DTNNPSPRALKLFLEALRRLKDAGIPVVVI 81 (390)
T ss_pred HHHHHHHHHHccCCEEEEccccc--cCCCCCHHHHHHHHHHHHHhccCCCcEEEe
Confidence 45667788888999999999832 222222234566777788887777776544
No 220
>PRK13753 dihydropteroate synthase; Provisional
Probab=21.95 E-value=1.4e+02 Score=28.26 Aligned_cols=51 Identities=29% Similarity=0.438 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCc-----cc-EEEeeccCCCCCHHHHHHHHHHHHh-CCCcEEE
Q 036715 191 VDSYISRLRELRRSGVS-----TD-GIGLQGHFTVPNLPLMRAIIDKMTT-LKLPIWL 241 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~-----iD-gIG~q~H~~~p~~~~~~~~L~~~a~-~glpI~i 241 (362)
...|.+.++.+++.|++ +| ||||--.-....--++.+.|++|.. +|+||.+
T Consensus 150 ~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLv 207 (279)
T PRK13753 150 VRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLV 207 (279)
T ss_pred HHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHHhCCCceEE
No 221
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=21.74 E-value=1.5e+02 Score=24.42 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHcCCcccEEEeeccCCC-CCHHHHHHHHHHHHhCCCcEEEeeeec
Q 036715 190 MVDSYISRLRELRRSGVSTDGIGLQGHFTV-PNLPLMRAIIDKMTTLKLPIWLTEVDI 246 (362)
Q Consensus 190 ~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~-p~~~~~~~~L~~~a~~glpI~iTE~dv 246 (362)
...++-..++.|+++|+.|.-..+-.+... -.-+.+.+.|++-+.-.|||-+=+=.+
T Consensus 25 eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGei 82 (123)
T PF06953_consen 25 ELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEI 82 (123)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEE
T ss_pred HHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEE
Confidence 345666677888888887777666544322 122467788888888889998754444
No 222
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=21.65 E-value=1.8e+02 Score=26.48 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCcccEEEeeccCCCC--CHH-------HHHHHHHHHH-hCCCc-EEEeeeecCCC--------CChHH
Q 036715 194 YISRLRELRRSGVSTDGIGLQGHFTVP--NLP-------LMRAIIDKMT-TLKLP-IWLTEVDISSK--------LSKEK 254 (362)
Q Consensus 194 y~~~i~~l~~~G~~iDgIG~q~H~~~p--~~~-------~~~~~L~~~a-~~glp-I~iTE~dv~~~--------~~~~~ 254 (362)
..+.++.+.+.+ +.-+|+|.|.++. +.+ .+.+.++++. ++|.+ +.+ +|+..+ .+.+.
T Consensus 143 ~~~~l~~~~~~~--l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~--idiGGG~~~~y~~~~~~~~ 218 (251)
T PF02784_consen 143 AEEALERAKELG--LRLVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFEDLEF--IDIGGGFGVPYDDEYDLEE 218 (251)
T ss_dssp HHHHHHHHHHTT--EEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT-SE--EEEESSB-SSSSSSSCHHH
T ss_pred HHHHHHhhccce--EEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhhccccccccccE--EEeeCCCCCCCcccccchh
Confidence 445566666666 8999999999763 322 2333444443 55655 544 333321 22344
Q ss_pred HHHHHHHHHHHHhc
Q 036715 255 QAVYLEQVLREGFS 268 (362)
Q Consensus 255 QA~~~~~~~~~~~s 268 (362)
-++.+...++..+.
T Consensus 219 ~~~~i~~~~~~~~~ 232 (251)
T PF02784_consen 219 YAEVIREALKEYFE 232 (251)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 56666667766654
No 223
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=21.57 E-value=2e+02 Score=28.68 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCC--------C-CHHHHHHHHHHHHhCCCcEEEee
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTV--------P-NLPLMRAIIDKMTTLKLPIWLTE 243 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~--------p-~~~~~~~~L~~~a~~glpI~iTE 243 (362)
.+.+.+.++.++++++|+|++-+...... + ..++..+.++.+.+.|+.+-+..
T Consensus 42 ~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~ 103 (441)
T PF01055_consen 42 QDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWV 103 (441)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCccceeccccccccccccccccccccchHHHHHhHhhCCcEEEEEe
Confidence 35667777888888888888877654421 0 12355566666667777655443
No 224
>PRK10812 putative DNAse; Provisional
Probab=21.48 E-value=6.6e+02 Score=23.30 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=27.7
Q ss_pred HHHHHHHHHcC--CcccEEEeeccCCCCCH----HHHHHHHHHHHhCCCcEEEeee
Q 036715 195 ISRLRELRRSG--VSTDGIGLQGHFTVPNL----PLMRAIIDKMTTLKLPIWLTEV 244 (362)
Q Consensus 195 ~~~i~~l~~~G--~~iDgIG~q~H~~~p~~----~~~~~~L~~~a~~glpI~iTE~ 244 (362)
++.++.+.... +.|.=||+-.|...... .-+++.|+.-.++|+||.|---
T Consensus 77 ~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r 132 (265)
T PRK10812 77 VEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTR 132 (265)
T ss_pred HHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 34455555433 24666677766432222 2345555555678999888743
No 225
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=21.43 E-value=3.4e+02 Score=23.95 Aligned_cols=75 Identities=23% Similarity=0.189 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhCC-CceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHH
Q 036715 155 KAALHFFQTAHQSDP-LATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMT 233 (362)
Q Consensus 155 ~~~~~af~~Ar~adP-~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a 233 (362)
+......+..|+.-| +.+|-|-..-.. .. +.. .+..|.. .+|.+=+|.|.+..+++...+-|.+++
T Consensus 58 ~~Y~~fL~~LR~~LP~~~~LSIT~L~dW--~~----~~~----~L~~L~~---~VDE~VlQ~yqGl~d~~~~~~yl~~l~ 124 (181)
T PF11340_consen 58 PAYAQFLQQLRQRLPPDYRLSITALPDW--LS----SPD----WLNALPG---VVDELVLQVYQGLFDPPNYARYLPRLA 124 (181)
T ss_pred HHHHHHHHHHHHhCCCCceEeeEEehhh--hc----Cch----hhhhHhh---cCCeeEEEeecCCCCHHHHHHHHHHHh
Confidence 344677888888766 588876542211 11 111 1223322 489999999988888888999999999
Q ss_pred hCCCcEEEe
Q 036715 234 TLKLPIWLT 242 (362)
Q Consensus 234 ~~glpI~iT 242 (362)
...+|..|-
T Consensus 125 ~l~~PFria 133 (181)
T PF11340_consen 125 RLTLPFRIA 133 (181)
T ss_pred cCCCCeEEe
Confidence 998998874
No 226
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=21.19 E-value=6.8e+02 Score=23.92 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=43.4
Q ss_pred CCcccEEEeeccCCCC-----CHHHHHHHHHHHH---hCCCcEEEeeeecCCC----CChHHHHHHHHHHHHHHhc
Q 036715 205 GVSTDGIGLQGHFTVP-----NLPLMRAIIDKMT---TLKLPIWLTEVDISSK----LSKEKQAVYLEQVLREGFS 268 (362)
Q Consensus 205 G~~iDgIG~q~H~~~p-----~~~~~~~~L~~~a---~~glpI~iTE~dv~~~----~~~~~QA~~~~~~~~~~~s 268 (362)
|--+-.+|+|+|+... ......+.|..+. ..+..+-|-|++..-. .+.+.|..++++.++++..
T Consensus 71 ~~v~~t~G~HP~~~~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~ 146 (296)
T KOG3020|consen 71 GSVYPTFGVHPHFSQEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKR 146 (296)
T ss_pred CceeeccCcCCCcccchhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHH
Confidence 5567788999998652 1222334444443 3488999999988753 2467899999998887764
No 227
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=21.02 E-value=6.2e+02 Score=25.22 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCcccEEEeeccCCCCCHH-------HHHHHHHHHHhCCCcEEEeeeecCC
Q 036715 192 DSYISRLRELRRSGVSTDGIGLQGHFTVPNLP-------LMRAIIDKMTTLKLPIWLTEVDISS 248 (362)
Q Consensus 192 ~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~-------~~~~~L~~~a~~glpI~iTE~dv~~ 248 (362)
....++++.+.+..-.++-.|+|.|+++.+.. .+.+.++.+.+.|.+ +..+|+..
T Consensus 151 ~e~~~~~~~i~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~idiGG 212 (423)
T cd06842 151 AEVRTALERLAQLRERVRLVGFHFHLDGYSAAQRVAALQECLPLIDRARALGLA--PRFIDIGG 212 (423)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCC--CCEEEeCC
Confidence 44556666666651237789999999874332 233444455555654 55566544
No 228
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=20.95 E-value=8.6e+02 Score=24.42 Aligned_cols=182 Identities=16% Similarity=0.193 Sum_probs=98.9
Q ss_pred cCcEEEEEEeecCCCCCCCccccCC------------ChHHHHHHHHHHHHHHHHHccC-ceeEEE--Eeccccccc--c
Q 036715 85 NKLIVRGHNIFWENPKYNPTWVRNL------------TGFQLQSAVNSRIQSLMNKYKE-EFIHWD--VSNEILHFD--F 147 (362)
Q Consensus 85 ~gi~v~GH~L~W~~~~~~P~W~~~~------------~~~~~~~~~~~~i~~vv~ry~g-~v~~WD--V~NE~~~~~--~ 147 (362)
.++++..- =|. .|+|++.- ..+...+.+.+|+-...+.|.- .|.-|- .=|||-.+. .
T Consensus 192 ~~lklfAs--PWs----aPgWlKttg~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi~FWglt~qNEPstG~d~~ 265 (518)
T KOG2566|consen 192 GNLKLFAS--PWS----APGWLKTTGRMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGIQFWGLTTQNEPSTGSDKK 265 (518)
T ss_pred CCceEEec--CCC----CCceeeecccccccccccCCCCchhHHHHHHHHHHHHHHHHhcCceEEeecccCCCCcCcccC
Confidence 34555443 354 79999741 1235677888888888888864 477774 469997542 1
Q ss_pred cc-cccC------hHHHHHHHHHHHh---hCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccC
Q 036715 148 YE-QRLG------PKAALHFFQTAHQ---SDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHF 217 (362)
Q Consensus 148 ~~-~~lG------~~~~~~af~~Ar~---adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~ 217 (362)
|. +.+| .|+++.-.-=|-+ .--++||+++|=+-..-|.-. +-. +.+ .++--.++||++|.+.
T Consensus 266 ~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~knvkllilDD~Rg~LP~Wa----dtv---lnD-peAakYv~GIaVHwY~ 337 (518)
T KOG2566|consen 266 WKWQTLGFTAETQRDFIKKDLGPALASSKTTKNVKLLILDDQRGLLPHWA----DTV---LND-PEAAKYVHGIAVHWYQ 337 (518)
T ss_pred CceeecccCHHHHHHHHHHhcchhhhcCCcCCceEEEEecCCccCCCccc----hhh---ccC-hhhhhhccceEEEeec
Confidence 11 2333 3555544333333 344699999985432222100 001 111 1122368999998886
Q ss_pred CCCCHHHHHHHHHHHH--hCCCcEEEeeeecCCC-------CChHHHHHHHHHHHHHHhcCCCeeEEEEEeee-cCCC
Q 036715 218 TVPNLPLMRAIIDKMT--TLKLPIWLTEVDISSK-------LSKEKQAVYLEQVLREGFSHPSVSGIMLWAAL-HPNG 285 (362)
Q Consensus 218 ~~p~~~~~~~~L~~~a--~~glpI~iTE~dv~~~-------~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~-d~~g 285 (362)
.--.++. .|+.-. -.+.=|.-||-..... .+-.+-.+|..+++.-.-- .|.|-+=|++. |+.|
T Consensus 338 df~~pa~---~L~eTh~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn--~vtGWtdwNl~Ld~~G 410 (518)
T KOG2566|consen 338 DFLEPAK---HLDETHRKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNN--HVTGWTDWNLILDAQG 410 (518)
T ss_pred cccChhh---hhhhHHhhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhh--hccceeeeeeEecCcC
Confidence 5322222 233321 2344566688655431 1234455666777766554 49998888874 5544
No 229
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=20.90 E-value=2.8e+02 Score=25.82 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH---cCCcccEEEeeccCCCC-CH----HHHHHHHHHHHhCCCcEEEe
Q 036715 193 SYISRLRELRR---SGVSTDGIGLQGHFTVP-NL----PLMRAIIDKMTTLKLPIWLT 242 (362)
Q Consensus 193 ~y~~~i~~l~~---~G~~iDgIG~q~H~~~p-~~----~~~~~~L~~~a~~glpI~iT 242 (362)
..++.+.++.. .-+.|.=||+-.|+... .. ..+++.|+.-.++++|+-|-
T Consensus 74 ~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH 131 (256)
T COG0084 74 EDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIH 131 (256)
T ss_pred HHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 33444444443 22356667777776442 22 22445555555778887765
No 230
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=20.89 E-value=5.9e+02 Score=29.40 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCcccEEEeeccCCCCCHHHHHHHHHHHHh------CCCcEEEe
Q 036715 191 VDSYISRLRELRRSGVSTDGIGLQGHFTVPNLPLMRAIIDKMTT------LKLPIWLT 242 (362)
Q Consensus 191 ~~~y~~~i~~l~~~G~~iDgIG~q~H~~~p~~~~~~~~L~~~a~------~glpI~iT 242 (362)
...|.++++.|.+.| +|.|-+..-+ +..++++.+....+ .++|+|+|
T Consensus 147 ~~~y~eq~~~L~~~G--vD~iliETi~---d~~EakAal~a~~~~~~~~~~~lPv~vS 199 (1178)
T TIGR02082 147 VDAYTEQAKGLLDGG--VDLLLIETCF---DTLNAKAALFAAETVFEEKGRELPIMIS 199 (1178)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEeccC---CHHHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence 456778888888877 6888776544 55566666665443 47999998
No 231
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.87 E-value=7.3e+02 Score=23.56 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=16.4
Q ss_pred cChHHHHHHHHHHHhhCCCceEEe
Q 036715 152 LGPKAALHFFQTAHQSDPLATLFM 175 (362)
Q Consensus 152 lG~~~~~~af~~Ar~adP~a~L~~ 175 (362)
+.++-+...|+.+-++-|+..+++
T Consensus 117 ~~~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 117 LDVDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEE
Confidence 456777888888877776555544
No 232
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=20.46 E-value=3.4e+02 Score=23.63 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcc
Q 036715 155 KAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVST 208 (362)
Q Consensus 155 ~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~i 208 (362)
+.++.+.+.+++.+|+..|+.+|.- +...........+.+.++.+.+.++|+
T Consensus 28 ~~~~~~~~~~~~~~~d~i~~~GD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v 79 (223)
T cd00840 28 EAFEEIVELAIEEKVDFVLIAGDLF--DSNNPSPEALELLIEALRRLKEAGIPV 79 (223)
T ss_pred HHHHHHHHHHHhcCCCEEEECCccc--CCCCCCHHHHHHHHHHHHHHHHCCCCE
Confidence 3467788888899999999999863 222111112234555555555445553
No 233
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=20.42 E-value=3.5e+02 Score=25.28 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEeeccCCC----CCH----HHHH
Q 036715 155 KAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTV----PNL----PLMR 226 (362)
Q Consensus 155 ~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~q~H~~~----p~~----~~~~ 226 (362)
+.+..+++..++.+=.|+.|+++... ..+-++++++.++|- -||.|++... -+. +++.
T Consensus 28 ~nt~riL~lL~~~gikATFFv~g~~~-----------e~~p~lir~i~~~Gh---EIgsHg~sH~~l~~ls~ee~~~eI~ 93 (265)
T TIGR03006 28 RNTDRILDLLDRHGVKATFFTLGWVA-----------ERYPELVRRIVAAGH---ELASHGYGHERVTTQTPEAFRADIR 93 (265)
T ss_pred HhHHHHHHHHHHcCCcEEEEEeccch-----------hhCHHHHHHHHHcCC---EeeeccccCcCchhCCHHHHHHHHH
Confidence 34677889999999999999987542 234466889999994 5677765432 132 3455
Q ss_pred HHHHHHH-hCCCcE
Q 036715 227 AIIDKMT-TLKLPI 239 (362)
Q Consensus 227 ~~L~~~a-~~glpI 239 (362)
+..+.+. ..|.++
T Consensus 94 ~s~~~Le~itG~~~ 107 (265)
T TIGR03006 94 RSKALLEDLSGQPV 107 (265)
T ss_pred HHHHHHHHHhCCCc
Confidence 5555554 246544
No 234
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=20.26 E-value=3.8e+02 Score=22.23 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=46.5
Q ss_pred ccchhHHHHHHHHHhcCcEEEEEEeecCCCCCCCccccCCC-hHHHHHHHHHHHHHHHHHccCceeEEEEeccccccccc
Q 036715 70 VNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLT-GFQLQSAVNSRIQSLMNKYKEEFIHWDVSNEILHFDFY 148 (362)
Q Consensus 70 ~~~~~~D~~v~~a~~~gi~v~GH~L~W~~~~~~P~W~~~~~-~~~~~~~~~~~i~~vv~ry~g~v~~WDV~NE~~~~~~~ 148 (362)
..|.....+++.|++.|+.+.-- + =+ -.+.|..-.. +.+.++.+.+.|+.++.+++- ...|.-+.....-+.
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfV-i-~P---vNg~wydytG~~~~~r~~~y~kI~~~~~~~gf--~v~D~s~~~y~~yfm 105 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFV-I-QP---VNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGF--NVADFSDDEYEPYFM 105 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEE-E--------HHHHHHTT--HHHHHHHHHHHHHHHHTTT----EEE-TTGTTSTTSB
T ss_pred ccHHHHHHHHHHHHHcCCceEEE-e-cC---CcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--EEEecccCCCCCcee
Confidence 35777788999999999999742 2 11 2456764211 344688899999999999976 556777765443344
Q ss_pred cc
Q 036715 149 EQ 150 (362)
Q Consensus 149 ~~ 150 (362)
.+
T Consensus 106 ~D 107 (130)
T PF04914_consen 106 QD 107 (130)
T ss_dssp SS
T ss_pred ee
Confidence 44
No 235
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.03 E-value=5.1e+02 Score=21.42 Aligned_cols=74 Identities=11% Similarity=-0.051 Sum_probs=31.2
Q ss_pred EEEEecccccccccccccChHHHHHHHHHHHhhCCCceEEeecCCCccCCCccchhHHHHHHHHHHHHHcCCcccEEEe
Q 036715 135 HWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGL 213 (362)
Q Consensus 135 ~WDV~NE~~~~~~~~~~lG~~~~~~af~~Ar~adP~a~L~~Ndy~~~~~~~~~~~~~~~y~~~i~~l~~~G~~iDgIG~ 213 (362)
.++|+|--..+.- -.+.+...-+......|+..++.=+-|-.....+.......+.++++.+++.|+++=-+++
T Consensus 36 ~~~v~n~g~~G~~-----~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 36 DVTVINAGVSGDT-----TAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred CeEEEecCcCCcc-----cHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4688888765321 1122222223334457875444322221111111111233444555555555655444443
Done!