BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036716
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 91 ILEPF--GDGVFAADGNLWKMQRKMIHSVMKH-NKFESALEKTIYQKLENGLIPVLDHAS 147
+++PF G GV A+GN WK+ R+ + M+ + ++E+ I Q+ LI L +
Sbjct: 84 MVDPFFRGYGVIFANGNRWKVLRRFSVTTMRDFGMGKRSVEERI-QEEAQCLIEELRKSK 142
Query: 148 EVGIKVDLQDVFQRFTFDNICMSVLGIDPNYLSFEF 183
G +D +FQ T + IC V G +Y EF
Sbjct: 143 --GALMDPTFLFQSITANIICSIVFGKRFHYQDQEF 176
>pdb|3AUZ|A Chain A, Crystal Structure Of Mre11 With Manganese
Length = 333
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 8 IFIGCLWSFKRSSRTRMLSTLVLNAHQLHEFATRVLQKSRGTLEFKGPWFAKMDFIITSD 67
IFI + K+S R ML L + + ++L +G P+ +D+
Sbjct: 140 IFICGTYYHKKSKREEMLDKLKNFESEAKNYKKKILMLHQGI----NPYIP-LDY----- 189
Query: 68 PMNVHYISSKNFSNYPKGPDLRMILEPFGDGVFAADGNLWKMQRKMIHSVMKHNK 122
+ + FS Y G + ILE F DG+ A G+ + R K K
Sbjct: 190 --ELEHFDLPKFSYYALGHIHKRILERFNDGILAYSGSTEIIYRNEYEDYKKEGK 242
>pdb|3AV0|A Chain A, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 386
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 8 IFIGCLWSFKRSSRTRMLSTLVLNAHQLHEFATRVLQKSRGTLEFKGPWFAKMDFIITSD 67
IFI + K+S R ML L + + ++L +G P+ +D+
Sbjct: 140 IFICGTYYHKKSKREEMLDKLKNFESEAKNYKKKILMLHQGI----NPYIP-LDY----- 189
Query: 68 PMNVHYISSKNFSNYPKGPDLRMILEPFGDGVFAADGNLWKMQRKMIHSVMKHNK 122
+ + FS Y G + ILE F DG+ A G+ + R K K
Sbjct: 190 --ELEHFDLPKFSYYALGHIHKRILERFNDGILAYSGSTEIIYRNEYEDYKKEGK 242
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 94 PFG------DGVFAADGNLWKMQRKMIHSVMKHNKFESALEKTIYQKLENGLIPVLDHAS 147
PFG + A+ WK R ++ K + + I + + L+ L +
Sbjct: 87 PFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMV--PIIAQYGDVLVRNLRREA 144
Query: 148 EVGIKVDLQDVFQRFTFDNICMSVLGIDPNYLS 180
E G V L+DVF ++ D I + G++ + L+
Sbjct: 145 ETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLN 177
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 94 PFG------DGVFAADGNLWKMQRKMIHSVMKHNKFESALEKTIYQKLENGLIPVLDHAS 147
PFG + A+ WK R ++ K + + I + + L+ L +
Sbjct: 86 PFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMV--PIIAQYGDVLVRNLRREA 143
Query: 148 EVGIKVDLQDVFQRFTFDNICMSVLGIDPNYLS 180
E G V L+DVF ++ D I + G++ + L+
Sbjct: 144 ETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLN 176
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 94 PFG------DGVFAADGNLWKMQRKMIHSVMKHNKFESALEKTIYQKLENGLIPVLDHAS 147
PFG + A+ WK R ++ K + + I + + L+ L +
Sbjct: 85 PFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMV--PIIAQYGDVLVRNLRREA 142
Query: 148 EVGIKVDLQDVFQRFTFDNICMSVLGIDPNYLS 180
E G V L+DVF ++ D I + G++ + L+
Sbjct: 143 ETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLN 175
>pdb|2HH9|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans
pdb|2HH9|B Chain B, Thiamin Pyrophosphokinase From Candida Albicans
Length = 339
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 85 GPDLRMILEPFGDGVFAADGNLWKMQRKMIHSVMKH--------NKFESALEKTIYQKLE 136
PD++ E G + + K IH + H N FES E KL
Sbjct: 131 SPDVKTYYESHGSKIIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVDGLAKLW 190
Query: 137 NGLIPVLDHASEVGIKVDL 155
NG L+++S+V + +D+
Sbjct: 191 NG----LNNSSDVVVDIDI 205
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 97 DGVFAADGNLWKMQRKMIHSVMKHNKFESALEKTIYQKLENGLIPVLDHASE 148
DGV ++ N + R++I ++H A E T + KL LI V+ A E
Sbjct: 296 DGVMPSNENRGYVLRRIIRRAVRHGNMLGAKE-TFFYKLVGPLIDVMGSAGE 346
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 97 DGVFAADGNLWKMQRKMIHSVMKHNKFESALEKTIYQKLENGLIPVLDHASE 148
DGV ++ N + R++I ++H A E T + KL LI V+ A E
Sbjct: 296 DGVMPSNENRGYVLRRIIRRAVRHGNMLGAKE-TFFYKLVGPLIDVMGSAGE 346
>pdb|3QC0|A Chain A, Crystal Structure Of A Sugar Isomerase (Smc04130) From
Sinorhizobium Meliloti 1021 At 1.45 A Resolution
Length = 275
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 137 NGLIPVLDHASEVGIKVDLQDVFQRFTFDNICMSVLGIDPNYLSFEFPQVAYA 189
G+ VL HA G+ + ++ + + D C++ LG + P V A
Sbjct: 123 EGIAAVLPHARAAGVPLAIEPLHPXYAADRACVNTLGQALDICETLGPGVGVA 175
>pdb|2G9Z|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans
pdb|2G9Z|B Chain B, Thiamin Pyrophosphokinase From Candida Albicans
Length = 348
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 85 GPDLRMILEPFGDGVFAADGNLWKMQRKMIHSVMKH--------NKFESALEKTIYQKLE 136
PD++ E G + + K IH + H N FES E KL
Sbjct: 131 SPDVKTYYESHGSKIIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVDGLAKLW 190
Query: 137 NGLIPVLDHASEVGIKVDL 155
NG L+++S+V + +D+
Sbjct: 191 NG----LNNSSDVVVDIDI 205
>pdb|3JU2|A Chain A, Crystal Structure Of Protein Smc04130 From Sinorhizobium
Meliloti 1021
Length = 284
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 137 NGLIPVLDHASEVGIKVDLQDVFQRFTFDNICMSVLGIDPNYLSFEFPQVAYA 189
G+ VL HA G+ + ++ + + D C++ LG + P V A
Sbjct: 124 EGIAAVLPHARAAGVPLAIEPLHPMYAADRACVNTLGQALDICETLGPGVGVA 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,864,936
Number of Sequences: 62578
Number of extensions: 229309
Number of successful extensions: 722
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 17
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)